Query         042259
Match_columns 745
No_of_seqs    445 out of 3196
Neff          8.5 
Searched_HMMs 13730
Date          Mon Mar 25 07:19:50 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042259.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042259hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1r6va_ c.41.1.1 (A:) Fervidol 100.0 2.2E-53 1.6E-57  493.5  22.2  360   29-606    28-443 (671)
  2 d1dbia_ c.41.1.1 (A:) Thermost 100.0 3.1E-49 2.3E-53  412.4  22.8  265  127-601    13-279 (280)
  3 d1v6ca_ c.41.1.1 (A:) Alkaline 100.0 2.2E-49 1.6E-53  440.3  19.4  359  134-601    15-426 (435)
  4 d1r0re_ c.41.1.1 (E:) Subtilis 100.0   4E-49 2.9E-53  410.9  19.2  257  132-601    13-274 (274)
  5 d1thma_ c.41.1.1 (A:) Thermita 100.0 8.2E-48   6E-52  402.0  23.8  259  132-601    20-278 (279)
  6 d1gcia_ c.41.1.1 (A:) Subtilis 100.0   1E-47 7.5E-52  398.9  23.8  257  132-601    13-269 (269)
  7 d1to2e_ c.41.1.1 (E:) Subtilis 100.0 1.3E-47 9.2E-52  400.9  22.7  257  132-601    13-275 (281)
  8 d2ixta1 c.41.1.1 (A:1-309) Sph 100.0 2.7E-43 1.9E-47  373.2  25.6  290  126-596     7-309 (309)
  9 d2pwaa1 c.41.1.1 (A:1-279) Pro 100.0 6.6E-43 4.8E-47  364.5  18.2  238  138-596    26-271 (279)
 10 d1wmda2 c.41.1.1 (A:1-318) Alk 100.0 8.8E-42 6.4E-46  362.9  21.1  292  134-601    12-317 (318)
 11 d1p8ja2 c.41.1.1 (A:109-442) F 100.0 1.1E-39 8.1E-44  348.9  18.7  284  132-601    26-328 (334)
 12 d2id4a2 c.41.1.1 (A:122-460) K 100.0 2.8E-39   2E-43  346.6  14.7  283  132-602    35-334 (339)
 13 d1t1ga_ c.41.1.2 (A:) Serine-c 100.0 1.7E-31 1.2E-35  287.4   5.9  313  137-601    18-353 (357)
 14 d1ga6a_ c.41.1.2 (A:) Serine-c  99.9 4.7E-28 3.4E-32  261.7   6.8  161  139-332    21-204 (369)
 15 d1scjb_ d.58.3.2 (B:) Subtilis  98.8 3.6E-09 2.6E-13   83.0   8.3   70   32-118     1-70  (71)
 16 d1v5ib1 d.58.3.2 (B:1-72) Prot  98.6 1.5E-08 1.1E-12   79.7   5.6   67   32-114     2-71  (72)
 17 d1w8oa1 b.1.18.2 (A:403-505) S  96.3   0.018 1.3E-06   47.4  11.2   90  648-741     6-96  (103)
 18 d1de4c2 c.8.4.1 (C:190-382) Tr  96.0  0.0036 2.7E-07   57.4   5.7   70  387-457    58-161 (193)
 19 d3bi1a2 c.8.4.1 (A:118-350) Gl  95.0   0.017 1.2E-06   54.5   6.8   71  387-458    76-194 (233)
 20 d1grwa_ b.1.11.2 (A:) Major sp  68.6     8.6 0.00062   31.6   8.2   51  661-714    24-74  (124)
 21 d1m1sa_ b.1.11.2 (A:) WR4 {Nem  66.3      17  0.0012   28.9   9.4   52  662-716    18-69  (109)
 22 d1rowa_ b.1.11.2 (A:) SSP-19 {  63.3      13 0.00094   29.6   8.0   51  662-715    15-65  (107)
 23 d1ex0a2 b.1.5.1 (A:516-627) Tr  55.0      14   0.001   29.6   6.9   57  659-716    15-78  (112)
 24 d1ejxb_ b.85.3.1 (B:) Urease,   48.4      28   0.002   26.9   7.1   16  660-675    18-33  (101)
 25 d1wica_ b.1.11.2 (A:) MSP doma  47.2      26  0.0019   29.6   7.7   65  661-728    36-102 (152)
 26 d2co7b1 b.1.11.1 (B:8-135) Per  44.0      55   0.004   26.4   9.2   56  661-719    20-80  (128)
 27 d4ubpb_ b.85.3.1 (B:) Urease,   42.5      35  0.0025   27.3   7.1   16  660-675    20-35  (122)
 28 d1g0da2 b.1.5.1 (A:472-583) Tr  41.8      21  0.0016   28.4   5.9   57  659-716    14-77  (112)
 29 d1vjja2 b.1.5.1 (A:479-593) Tr  41.1      31  0.0023   27.5   6.9   57  659-716    17-80  (115)
 30 d1v6ca_ c.41.1.1 (A:) Alkaline  40.2     6.8 0.00049   39.7   3.1   32  476-515   181-212 (435)
 31 d1p5va1 b.1.11.1 (A:7-147) Cha  37.5      76  0.0055   26.0   9.1   56  661-719    21-83  (141)
 32 d2q3za2 b.1.5.1 (A:472-585) Tr  35.6      56  0.0041   25.8   7.6   56  660-716    16-79  (114)
 33 d2vzsa2 b.1.4.1 (A:778-899) Ex  31.8      80  0.0058   25.3   7.9   58  659-717    37-100 (122)
 34 d2j2za1 b.1.11.1 (A:1-124) Pil  31.1      97  0.0071   24.6   8.6   52  661-714    15-73  (124)
 35 d1e9ya1 b.85.3.1 (A:106-238) U  30.0      45  0.0033   27.0   5.8   16  660-675    18-33  (133)
 36 d1exha_ b.2.2.1 (A:) Exo-1,4-b  29.3 1.1E+02   0.008   23.8   8.3   30  661-690    20-50  (110)
 37 d1k78a2 a.4.1.5 (A:82-142) Pax  28.4      30  0.0022   24.1   3.8   33  534-566     9-41  (61)
 38 d3bwuc1 b.1.11.1 (C:1-121) Per  23.1      82   0.006   25.0   6.5   52  661-714    15-71  (121)
 39 d6paxa2 a.4.1.5 (A:69-133) Pax  22.1      45  0.0032   23.5   3.8   33  534-566     7-39  (65)
 40 d1mzga_ d.224.1.1 (A:) SufE (Y  20.7      33  0.0024   28.6   3.5   34  527-561    65-98  (144)
 41 d1wgla_ a.5.2.4 (A:) Toll-inte  20.4      31  0.0023   24.0   2.7   26  542-567    12-37  (59)

No 1  
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}
Probab=100.00  E-value=2.2e-53  Score=493.55  Aligned_cols=360  Identities=23%  Similarity=0.258  Sum_probs=261.5

Q ss_pred             CCCCceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHH----HH--hh
Q 042259           29 ANGLQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEV----KA--ME  102 (745)
Q Consensus        29 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~----~~--L~  102 (745)
                      +..+++|||.||+...         .    ++++++         .+.++++.+. .++.+.++++...+    +.  +.
T Consensus        28 ~~~~~~~iV~~k~~~~---------~----~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   84 (671)
T d1r6va_          28 EYTEGKILVGYNDRSE---------V----DKIVKA---------VNGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKAL   84 (671)
T ss_dssp             SBCTTEEEEEESSHHH---------H----HHHHHH---------HTCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTS
T ss_pred             CcCCCeEEEEECCccC---------H----HHHHHh---------cCCEEEEEec-ccceEEEEcCchhHHHHHHHHHHh
Confidence            3468999999986532         1    222222         2345566655 56667777754322    22  34


Q ss_pred             cCCCeEEEEEccccCCCCC----CC-----------------------CCccCccC--CCCCccCCCCCCccEEEEecCC
Q 042259          103 TKSGFISARVENILEPQTT----HS-----------------------PNFLGLHQ--NSGFWKDSNLGKGVIIGVLDMG  153 (745)
Q Consensus       103 ~~p~V~~v~~~~~~~~~~~----~s-----------------------~~~~g~~~--~~~~~~~~~~G~gv~VaVIDtG  153 (745)
                      .+|+|++|||+...++...    ..                       ...|++++  ..++|....+|+||+|||||||
T Consensus        85 ~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtG  164 (671)
T d1r6va_          85 ALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTG  164 (671)
T ss_dssp             CCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESC
T ss_pred             cCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCC
Confidence            5899999999855443210    00                       01233332  2233334569999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCC-----CCCCCCCCCCChhhhhhhhcccccCCCcccCC
Q 042259          154 ITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLN-----KSEPPIDNDGHGTHTASTAAGNFVNGANLFGQ  228 (745)
Q Consensus       154 id~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~-----~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~  228 (745)
                      ||++||+|.++-                       +..+++..     ...++.|..||||||||||||+..        
T Consensus       165 vd~~Hpdl~~~~-----------------------~~~~~~~~~~~~~~~~~~~d~~gHGT~VAGiiaa~~~--------  213 (671)
T d1r6va_         165 VDGTHPDLEGQV-----------------------IAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD--------  213 (671)
T ss_dssp             CBTTSGGGTTTB-----------------------CCEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCS--------
T ss_pred             cCCCChhhcCCc-----------------------ccCccccccCCCCCCCcCcccCCCCccccceeeeecc--------
Confidence            999999998641                       11222211     113456788999999999998742        


Q ss_pred             CCcceeeeccCceEEeeecccC-----CCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHHHHHHHHhcCCc
Q 042259          229 ANGTAAGMAPLAHLAIYKVCET-----DLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMATAAFTASQKGI  302 (745)
Q Consensus       229 ~~g~~~GvAP~A~l~~~kv~~~-----~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gi  302 (745)
                      +.+ +.||||+|+|+++|+++.     ..+ .....+++||+||+++|++|||||||+..   ....+..++..+.++|+
T Consensus       214 ~~g-~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~---~~~~~~~ai~~a~~~gv  289 (671)
T d1r6va_         214 GKG-IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGV  289 (671)
T ss_dssp             SSS-CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTC
T ss_pred             ccc-eeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc---CChHHHHHHHHHHhccC
Confidence            122 479999999999999972     123 56778999999999999999999999763   22345555668889999


Q ss_pred             EEEEccCCCCCCC-CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecCCCCCCCCccC
Q 042259          303 LVSCSAGNSGPNS-STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPGVKNSSAAFCL  381 (745)
Q Consensus       303 ~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  381 (745)
                      ++|+||||++.+. ..+++..|++|+|||++.+.                                              
T Consensus       290 ~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~----------------------------------------------  323 (671)
T d1r6va_         290 VMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG----------------------------------------------  323 (671)
T ss_dssp             EEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET----------------------------------------------
T ss_pred             cEEEEEecCCCCccccCCccCCceEEEEEecCCC----------------------------------------------
Confidence            9999999998765 46778899999999953111                                              


Q ss_pred             CCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCC
Q 042259          382 PETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSS  461 (745)
Q Consensus       382 ~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~  461 (745)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (671)
T d1r6va_         324 --------------------------------------------------------------------------------  323 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCc---------cCCCcccceeeeccc
Q 042259          462 PTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEE---------NITNTKSTFTMISGT  532 (745)
Q Consensus       462 ~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~---------~~~~~~~~y~~~sGT  532 (745)
                                     ....++.||+|||..        ||+|||++|+++++....         ......+.|..++||
T Consensus       324 ---------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGT  380 (671)
T d1r6va_         324 ---------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGT  380 (671)
T ss_dssp             ---------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESH
T ss_pred             ---------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCH
Confidence                           011678999999986        999999999999875431         112234689999999


Q ss_pred             cchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCCccc
Q 042259          533 SMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKANDPGLVY  606 (745)
Q Consensus       533 SmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~lv~  606 (745)
                      |||||||||++|||+|++|+|++.|||++|++||+++...           ..+..||||+||+.+||+..+..
T Consensus       381 S~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vna~~Av~~~~~~  443 (671)
T d1r6va_         381 SMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGPLPT  443 (671)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHHHHHCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcccChhCHHHHhhCcCCC
Confidence            9999999999999999999999999999999999987543           35678999999999999865443


No 2  
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}
Probab=100.00  E-value=3.1e-49  Score=412.37  Aligned_cols=265  Identities=29%  Similarity=0.423  Sum_probs=215.1

Q ss_pred             cCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCC
Q 042259          127 LGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDN  204 (745)
Q Consensus       127 ~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~  204 (745)
                      |+++.  ++.+|+.+++|+||+|+|||||||++||+|.++                       ++..+++......+.|.
T Consensus        13 w~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~~~~~d~   69 (280)
T d1dbia_          13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------VIKGYDFVDNDYDPMDL   69 (280)
T ss_dssp             CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-----------------------EEEEEETTTTBSCCCCS
T ss_pred             cChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC-----------------------eeecccccCCCCccccc
Confidence            44443  456999999999999999999999999999853                       55667777665677889


Q ss_pred             CCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 042259          205 DGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP  284 (745)
Q Consensus       205 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~  284 (745)
                      .+|||||||+|+|...+        .+.+.||||+|+|+.+|+++....+...++++||+|++++|++|||+|||.....
T Consensus        70 ~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~~~  141 (280)
T d1dbia_          70 NNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHT  141 (280)
T ss_dssp             SSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCCCC
T ss_pred             cccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccccccccc
Confidence            99999999999987532        2235899999999999999833348889999999999999999999999986422


Q ss_pred             ChhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCc
Q 042259          285 FFADAMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQ  364 (745)
Q Consensus       285 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (745)
                         +....+...+.++|+++|+||||+|......++..+++|+||+.+                                
T Consensus       142 ---~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~--------------------------------  186 (280)
T d1dbia_         142 ---TTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD--------------------------------  186 (280)
T ss_dssp             ---HHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC--------------------------------
T ss_pred             ---hhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec--------------------------------
Confidence               223344457889999999999999988888888999999999942                                


Q ss_pred             eeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEE
Q 042259          365 LPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYV  444 (745)
Q Consensus       365 ~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i  444 (745)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (280)
T d1dbia_         187 --------------------------------------------------------------------------------  186 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCccc
Q 042259          445 SYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKS  524 (745)
Q Consensus       445 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~  524 (745)
                                                      ..+.++.||++||..        |++|||.+|++....         .
T Consensus       187 --------------------------------~~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~---------~  217 (280)
T d1dbia_         187 --------------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITG---------N  217 (280)
T ss_dssp             --------------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETT---------T
T ss_pred             --------------------------------CCCCcCCcCCCCCcc--------cccCCccceeccccC---------c
Confidence                                            123678999999976        999999999999887         7


Q ss_pred             ceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259          525 TFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND  601 (745)
Q Consensus       525 ~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~  601 (745)
                      .|..++|||||||+|||++|||+|.  .+++.+||++|++||+++..             +...||+|+||+++||+
T Consensus       218 ~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~-------------~~~~~G~G~ln~~~Al~  279 (280)
T d1dbia_         218 RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG-------------TGTYFKYGRINSYNAVT  279 (280)
T ss_dssp             EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT-------------BTTTBSSEECCHHHHHT
T ss_pred             ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC-------------CCCcCCCCeEcHHHHcC
Confidence            8999999999999999999999995  55899999999999987632             34579999999999986


No 3  
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Probab=100.00  E-value=2.2e-49  Score=440.27  Aligned_cols=359  Identities=26%  Similarity=0.326  Sum_probs=231.0

Q ss_pred             CCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCC--CCCCCCCCCChhhh
Q 042259          134 GFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNK--SEPPIDNDGHGTHT  211 (745)
Q Consensus       134 ~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~--~~~~~d~~gHGThV  211 (745)
                      .+|.  .+|+||+|+|||||||++||+|.++                       ++..+++...  ...+.|++||||||
T Consensus        15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~-----------------------~~~~~~~~~~~~~~~~~d~~gHGThv   69 (435)
T d1v6ca_          15 VLSD--SQAGNRTICIIDSGYDRSHNDLNAN-----------------------NVTGTNNSGTGNWYQPGNNNAHGTHV   69 (435)
T ss_dssp             GSCC--TTGGGCEEEEEESCCCTTSTTTTTS-----------------------EEEECCCTTSCCTTCCCSSCCHHHHH
T ss_pred             hhhh--cCCCCcEEEEEcCCCCCCChhhccC-----------------------eeeeeccCCCCCCCCCCCCCCcHHHH
Confidence            3554  4899999999999999999999864                       3333444322  24567889999999


Q ss_pred             hhhhcccccCCCcccCCCCcceeeecc--CceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCCChhh
Q 042259          212 ASTAAGNFVNGANLFGQANGTAAGMAP--LAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPSLPFFAD  288 (745)
Q Consensus       212 AGiiag~~~~~~~~~g~~~g~~~GvAP--~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~~~~~  288 (745)
                      ||||||+..+        .+ +.||||  +++|+.+|++.....+...++++||+++++ .+++|||+|||....   ..
T Consensus        70 Agiiag~~~~--------~g-~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~~~~---~~  137 (435)
T d1v6ca_          70 AGTIAAIANN--------EG-VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGS---TT  137 (435)
T ss_dssp             HHHHHCCCSS--------SB-CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSCC---BH
T ss_pred             HHHHhccCCC--------Cc-eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCCCCC---CH
Confidence            9999997422        12 479999  899999999983333677789999999986 599999999998743   23


Q ss_pred             HHHHHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeee--eeeeccCCCC-------
Q 042259          289 AMATAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETY--DGETIFQPKD-------  359 (745)
Q Consensus       289 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------  359 (745)
                      .+..++..+.++|+++|+||||+|....++++.++++|+||+++.+.........+....+  .|..++....       
T Consensus       138 ~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st~~~g~~~~~  217 (435)
T d1v6ca_         138 TERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLA  217 (435)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEECSTTCEEEE
T ss_pred             HHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeeeeecCCCccc
Confidence            3445556788999999999999999999999999999999998765432110000100000  0000000000       


Q ss_pred             ---------CCCCc--eeeEecCCCC---C--------CCCcc--CCCCCCCCcccceEEEEeeCCCc-----chhhhhh
Q 042259          360 ---------FPSKQ--LPLVYPGVKN---S--------SAAFC--LPETLKSIDVKGKVVLCQRGGGT-----QRIRKGK  410 (745)
Q Consensus       360 ---------~~~~~--~~~~~~~~~~---~--------~~~~c--~~~~~~~~~~~g~ivl~~~~g~~-----~~~~~~~  410 (745)
                               +....  ...+......   .        ....|  ....+...++.+++.++ .+...     ....+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  296 (435)
T d1v6ca_         218 DITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLV-ERVGNQGSSYPEINSTK  296 (435)
T ss_dssp             EEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEE-ECCSCSSSSCTHHHHHH
T ss_pred             ccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeecccccccccee-eccCCccccceeeeece
Confidence                     00000  0000000000   0        00000  00112233445555555 33221     1223333


Q ss_pred             hHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCC
Q 042259          411 DVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPN  490 (745)
Q Consensus       411 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~  490 (745)
                      .....++.+++.++                                                            ++.+|.
T Consensus       297 ~~~~~~~~~~~~~~------------------------------------------------------------~~~~~~  316 (435)
T d1v6ca_         297 ACKTAGAKGIIVYS------------------------------------------------------------NSALPG  316 (435)
T ss_dssp             HHHHTTCSEEEEEC------------------------------------------------------------CSSSCS
T ss_pred             eecccCCcceEEec------------------------------------------------------------cCCCCC
Confidence            34444444444333                                                            333333


Q ss_pred             CCC--CCCccCceEeCCccEEeccCCCC--------ccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 042259          491 TAS--PGILKPDIIGPGVSILAAWPFSE--------ENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKS  560 (745)
Q Consensus       491 ~~~--~g~~KPDi~APG~~I~sa~~~~~--------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~  560 (745)
                      ...  .+..|||+.+||..|.++.....        .........|..|+|||||||||||++|||+|+||+|+++|||+
T Consensus       317 ~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~  396 (435)
T d1v6ca_         317 LQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRA  396 (435)
T ss_dssp             CCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred             cCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence            211  24678999999988875532111        01112236799999999999999999999999999999999999


Q ss_pred             HHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259          561 AIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND  601 (745)
Q Consensus       561 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~  601 (745)
                      +||+||+++..           ++++++||+|+||+.+|++
T Consensus       397 ~L~~TA~~~~~-----------~~~~~~~G~G~vn~~~A~~  426 (435)
T d1v6ca_         397 ALNATADDLSV-----------AGRDNQTGYGMINAVAAKA  426 (435)
T ss_dssp             HHHHHSBCCSS-----------SSCBTTTBTCBCCHHHHHH
T ss_pred             HHHhhCcccCC-----------CCCCCCcccceecHHHHHH
Confidence            99999997743           3567899999999999975


No 4  
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}
Probab=100.00  E-value=4e-49  Score=410.85  Aligned_cols=257  Identities=32%  Similarity=0.499  Sum_probs=216.5

Q ss_pred             CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259          132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT  211 (745)
Q Consensus       132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV  211 (745)
                      ...+|..+++|+||+|||||||||++||+|+                         +...++|..+...+.|.++|||||
T Consensus        13 ~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-------------------------~~~~~~~~~~~~~~~d~~gHGT~v   67 (274)
T d1r0re_          13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLN-------------------------VVGGASFVAGEAYNTDGNGHGTHV   67 (274)
T ss_dssp             HHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECSTTCCTTCCSSSHHHHH
T ss_pred             hHHHHHcCCCCCCeEEEEECCCCCCCChhhc-------------------------ccCCccccCCCCCCCCcccccccc
Confidence            4558999999999999999999999999995                         334667776656777889999999


Q ss_pred             hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHH
Q 042259          212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAM  290 (745)
Q Consensus       212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~  290 (745)
                      ||||++....        .+ +.|+||+|+|+.+++++ ..+ ...++++++++++.+++++|+|+|||......   ..
T Consensus        68 Agii~~~~~~--------~~-~~gvap~a~i~~~~~~~-~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~~~~---~~  134 (274)
T d1r0re_          68 AGTVAALDNT--------TG-VLGVAPSVSLYAVKVLN-SSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGST---AM  134 (274)
T ss_dssp             HHHHHCCSSS--------SB-CCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSCCH---HH
T ss_pred             cccccccccc--------cc-ccccCCCcEEEEEEEeC-CCCCcCHHHHHHHHHHHHhcCCceeccccccccchh---hh
Confidence            9999987432        12 37999999999999998 555 67889999999999999999999999874332   23


Q ss_pred             HHHHHHHhcCCcEEEEccCCCCCCC----CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCcee
Q 042259          291 ATAAFTASQKGILVSCSAGNSGPNS----STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLP  366 (745)
Q Consensus       291 ~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (745)
                      .....++.++++++|+||||+|...    ..++...+++|+||+.+.                                 
T Consensus       135 ~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~---------------------------------  181 (274)
T d1r0re_         135 KQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS---------------------------------  181 (274)
T ss_dssp             HHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------------------------------
T ss_pred             hHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC---------------------------------
Confidence            3334478899999999999998653    344567889999998421                                 


Q ss_pred             eEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEch
Q 042259          367 LVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSY  446 (745)
Q Consensus       367 ~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~  446 (745)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (274)
T d1r0re_         182 --------------------------------------------------------------------------------  181 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccce
Q 042259          447 AAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTF  526 (745)
Q Consensus       447 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y  526 (745)
                                                     .+.+++||++||.        |||+|||++|+++.+.         +.|
T Consensus       182 -------------------------------~~~~~~~s~~g~~--------~di~APG~~i~~~~~~---------~~~  213 (274)
T d1r0re_         182 -------------------------------NSNRASFSSVGAE--------LEVMAPGAGVYSTYPT---------NTY  213 (274)
T ss_dssp             -------------------------------TSCBCTTCCCSTT--------EEEEEECSSEEEEETT---------TEE
T ss_pred             -------------------------------CCCcccccCCCCC--------EEEEecCCCcccccCC---------CCe
Confidence                                           1267899999985        4999999999999887         789


Q ss_pred             eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259          527 TMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND  601 (745)
Q Consensus       527 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~  601 (745)
                      ..++|||||||+|||++|||+|++|+|++++||++|++||+++.              +...||+|+||+++|++
T Consensus       214 ~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~ln~~~A~~  274 (274)
T d1r0re_         214 ATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFYYGKGLINVEAAAQ  274 (274)
T ss_dssp             EEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred             EeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCceEcCeecHHHhcC
Confidence            99999999999999999999999999999999999999998752              35689999999999986


No 5  
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}
Probab=100.00  E-value=8.2e-48  Score=401.99  Aligned_cols=259  Identities=31%  Similarity=0.475  Sum_probs=221.4

Q ss_pred             CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259          132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT  211 (745)
Q Consensus       132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV  211 (745)
                      ++.+|+.+ +|+||+|+|||||||++||+|.++                       ++..++|.+++..+.|..+|||||
T Consensus        20 a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~-----------------------~~~~~~~~~~~~~~~d~~~HGT~v   75 (279)
T d1thma_          20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-----------------------VVGGWDFVDNDSTPQNGNGHGTHC   75 (279)
T ss_dssp             HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEETTTTBSCCCCSSSHHHHH
T ss_pred             HHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC-----------------------eeccccccccCccccccccccccc
Confidence            45689887 999999999999999999999853                       566778887767788999999999


Q ss_pred             hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHH
Q 042259          212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMA  291 (745)
Q Consensus       212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~  291 (745)
                      ||+|++...+        ...+.|+||+|+|+.+|++.....+...+++++|+++.+.+++|+|+|||.....   ....
T Consensus        76 ag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~~~---~~~~  144 (279)
T d1thma_          76 AGIAAAVTNN--------STGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGN---SGLQ  144 (279)
T ss_dssp             HHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSSCC---HHHH
T ss_pred             ceeeeeccCC--------CccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccccc---hhHH
Confidence            9999988532        2235899999999999999833348888999999999999999999999986432   3334


Q ss_pred             HHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecC
Q 042259          292 TAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPG  371 (745)
Q Consensus       292 ~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (745)
                      .+...+.++|+++|+|+||+|......+...+++|+|||++                                       
T Consensus       145 ~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~---------------------------------------  185 (279)
T d1thma_         145 QAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTD---------------------------------------  185 (279)
T ss_dssp             HHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEEC---------------------------------------
T ss_pred             HHHHHHHhcCceEEEeccccccCCCcccccccccccccccc---------------------------------------
Confidence            45557889999999999999998888888999999999952                                       


Q ss_pred             CCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHH
Q 042259          372 VKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGER  451 (745)
Q Consensus       372 ~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~  451 (745)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (279)
T d1thma_         186 --------------------------------------------------------------------------------  185 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeecc
Q 042259          452 IKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISG  531 (745)
Q Consensus       452 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sG  531 (745)
                                               ..+.++.||++|++.        ||+|||.+|+++.+.         +.|..++|
T Consensus       186 -------------------------~~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~---------~~~~~~sG  223 (279)
T d1thma_         186 -------------------------QNDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT---------STYASLSG  223 (279)
T ss_dssp             -------------------------TTSCBCTTCCCCTTC--------CEEEECSSEEEEETT---------TEEEEECS
T ss_pred             -------------------------CCCCCccccCCCceE--------EEeeeeeccccccCc---------ccccccCC
Confidence                                     123678999999987        999999999999988         78999999


Q ss_pred             ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259          532 TSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND  601 (745)
Q Consensus       532 TSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~  601 (745)
                      ||||||+|||++|||+|.+|  ++.+||++|++||+++.             ..+..||+|+||+.+||+
T Consensus       224 TS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~-------------g~~~~~G~G~vn~~~Av~  278 (279)
T d1thma_         224 TSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS-------------GTGTYWAKGRVNAYKAVQ  278 (279)
T ss_dssp             HHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT-------------TBTTTBSSEECCHHHHHH
T ss_pred             cchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC-------------CCCCcceeeeEcHHHhhC
Confidence            99999999999999999765  79999999999998763             234579999999999975


No 6  
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Probab=100.00  E-value=1e-47  Score=398.90  Aligned_cols=257  Identities=33%  Similarity=0.495  Sum_probs=219.0

Q ss_pred             CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259          132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT  211 (745)
Q Consensus       132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV  211 (745)
                      .+.+|+.+++|+||+|+||||||+ +||+|..                         ...++|..+...+.|.++|||||
T Consensus        13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~-------------------------~~~~~~~~~~~~~~d~~~HGT~v   66 (269)
T d1gcia_          13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNI-------------------------RGGASFVPGEPSTQDGNGHGTHV   66 (269)
T ss_dssp             HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCE-------------------------EEEEECSTTCCSCSCSSSHHHHH
T ss_pred             cHHHHhCCCCCCCeEEEEECCCCC-CCcccCc-------------------------cccccccCCCCCccccchhhhee
Confidence            456999999999999999999998 8999963                         23556776656778899999999


Q ss_pred             hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhHHH
Q 042259          212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADAMA  291 (745)
Q Consensus       212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~  291 (745)
                      ||||++....         ....|+||+|+|+.+|++..........+.++++++..+++++||+|||.....   ....
T Consensus        67 Agii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~~~---~~~~  134 (269)
T d1gcia_          67 AGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPS---ATLE  134 (269)
T ss_dssp             HHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSCC---HHHH
T ss_pred             cccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccccc---chHH
Confidence            9999987422         224799999999999999833347788899999999999999999999976432   2233


Q ss_pred             HHHHHHhcCCcEEEEccCCCCCCCCCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEecC
Q 042259          292 TAAFTASQKGILVSCSAGNSGPNSSTLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVYPG  371 (745)
Q Consensus       292 ~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (745)
                      .+...+.++|+++|+||||+|.....+++..+++|+||+++.                                      
T Consensus       135 ~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------------------  176 (269)
T d1gcia_         135 QAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ--------------------------------------  176 (269)
T ss_dssp             HHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT--------------------------------------
T ss_pred             HHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEcc--------------------------------------
Confidence            444578899999999999999988888999999999999521                                      


Q ss_pred             CCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhHHH
Q 042259          372 VKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAGER  451 (745)
Q Consensus       372 ~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~  451 (745)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (269)
T d1gcia_         177 --------------------------------------------------------------------------------  176 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeeecc
Q 042259          452 IKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMISG  531 (745)
Q Consensus       452 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sG  531 (745)
                                                .+.++.||++||..        ||+|||.++.++.+.         ..|..++|
T Consensus       177 --------------------------~~~~~~~S~~G~~~--------di~Apg~~~~~~~~~---------~~~~~~sG  213 (269)
T d1gcia_         177 --------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPG---------STYASLNG  213 (269)
T ss_dssp             --------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT---------TEEEEECS
T ss_pred             --------------------------CCCcccccCCCCCc--------eEEEeeecceeccCC---------CceEecCC
Confidence                                      12678999999876        999999999999887         78999999


Q ss_pred             ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259          532 TSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND  601 (745)
Q Consensus       532 TSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~  601 (745)
                      ||||||+|||++|||+|++|+|++++||++|++||+++.              ++..||+|+||+++|++
T Consensus       214 TS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g--------------~~~~~G~G~ln~~~Avk  269 (269)
T d1gcia_         214 TSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSGLVNAEAATR  269 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred             cchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccCeEcHHHhcC
Confidence            999999999999999999999999999999999998763              34579999999999985


No 7  
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}
Probab=100.00  E-value=1.3e-47  Score=400.94  Aligned_cols=257  Identities=33%  Similarity=0.514  Sum_probs=214.7

Q ss_pred             CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCC-CCCCCChhh
Q 042259          132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPP-IDNDGHGTH  210 (745)
Q Consensus       132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~-~d~~gHGTh  210 (745)
                      ++.+|+.+++|+||+|+|||||||++||+|+.                         ...+++......+ .+..+||||
T Consensus        13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~-------------------------~~~~~~~~~~~~~~~~~~~HGT~   67 (281)
T d1to2e_          13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-------------------------AGGASMVPSETNPFQDNNSHGTH   67 (281)
T ss_dssp             HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-------------------------EEEEECCTTCCCTTCCSSSHHHH
T ss_pred             cHHHHHCCCCCCCeEEEEECCCCCCCChhhhh-------------------------cCCccccCCCCCCCcCcCCCCce
Confidence            45699999999999999999999999999963                         2344454433333 346799999


Q ss_pred             hhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhH
Q 042259          211 TASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG-CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADA  289 (745)
Q Consensus       211 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~  289 (745)
                      |||||+|.....         ...|+||+|+|+.+|++. ..+ ....+++++|+|+++.+++|+|+|||...   ....
T Consensus        68 vAgiiag~~~~~---------~~~giAp~a~l~~~kv~~-~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~~---~~~~  134 (281)
T d1to2e_          68 VAGTVAALNNSI---------GVLGVAPSASLYAVKVLG-ADGSGQYSWIINGIEWAIANNMDVINMSLGGPS---GSAA  134 (281)
T ss_dssp             HHHHHHCCSSSS---------SBCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHH
T ss_pred             eecccccCCCCC---------CcceeecccEEEEEEEeC-CCCCcCHHHHHHHHHHHHhccccccccccCCCc---chHH
Confidence            999999874221         147999999999999998 555 77889999999999999999999999763   2344


Q ss_pred             HHHHHHHHhcCCcEEEEccCCCCCCC----CCcccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCce
Q 042259          290 MATAAFTASQKGILVSCSAGNSGPNS----STLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQL  365 (745)
Q Consensus       290 ~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (745)
                      +..++..+.++|+++|+||||+|...    ...++..+++|+||+.+.                                
T Consensus       135 ~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------------------------------  182 (281)
T d1to2e_         135 LKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------------------------------  182 (281)
T ss_dssp             HHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT--------------------------------
T ss_pred             HHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC--------------------------------
Confidence            55566688899999999999998753    335677889999998521                                


Q ss_pred             eeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEc
Q 042259          366 PLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVS  445 (745)
Q Consensus       366 ~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~  445 (745)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (281)
T d1to2e_         183 --------------------------------------------------------------------------------  182 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccc
Q 042259          446 YAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKST  525 (745)
Q Consensus       446 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~  525 (745)
                                                      .+.++.||++||..        |++|||.+|+++.+.         +.
T Consensus       183 --------------------------------~~~~~~~S~~G~~~--------d~~apG~~i~s~~~~---------~~  213 (281)
T d1to2e_         183 --------------------------------SNQRASFSSVGPEL--------DVMAPGVSIQSTLPG---------NK  213 (281)
T ss_dssp             --------------------------------TSCBCTTCCCSTTC--------CEEEECSSEEEEETT---------TE
T ss_pred             --------------------------------CCCCCcccCCCCCc--------cccCCCCCceeecCC---------Ce
Confidence                                            12678999999977        999999999999887         78


Q ss_pred             eeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCCCC
Q 042259          526 FTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKAND  601 (745)
Q Consensus       526 y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A~~  601 (745)
                      |..++|||||||+|||++|||+|++|+|++.+||++|++||+++.              +...||+|+||+.+|++
T Consensus       214 ~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~ld~~~A~~  275 (281)
T d1to2e_         214 YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQAAAQ  275 (281)
T ss_dssp             EEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHHHTTCBCCHHHHTS
T ss_pred             eEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccCcccHHHHHh
Confidence            999999999999999999999999999999999999999998763              24579999999999998


No 8  
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}
Probab=100.00  E-value=2.7e-43  Score=373.15  Aligned_cols=290  Identities=28%  Similarity=0.375  Sum_probs=218.4

Q ss_pred             ccCccC--CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC----C
Q 042259          126 FLGLHQ--NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS----E  199 (745)
Q Consensus       126 ~~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~----~  199 (745)
                      .|++++  .+.+|..+++|+||+|+|||||||++||+|.++                       +...++|....    .
T Consensus         7 ~wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~-----------------------~~~~~~~~~~~~~~~~   63 (309)
T d2ixta1           7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------VEQCKDFTGATTPINN   63 (309)
T ss_dssp             CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEESSSSSSCEET
T ss_pred             ChhHhhcCChhhhccCCCCCCeEEEEEccCCCCCChhHhcc-----------------------ccccccccCCCCCCCC
Confidence            356554  677999999999999999999999999999853                       34445555332    3


Q ss_pred             CCCCCCCChhhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCC-----CcEE
Q 042259          200 PPIDNDGHGTHTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEG-----VDVL  274 (745)
Q Consensus       200 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g-----~dVI  274 (745)
                      ...|..+|||||||||+|....+       ...+.||||+|+|+.++++.....+..++++.+++++++.+     ..|+
T Consensus        64 ~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~  136 (309)
T d2ixta1          64 SCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTII  136 (309)
T ss_dssp             CCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             Ccccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccc
Confidence            45678899999999999875322       22347999999999999998333478888999999888753     4699


Q ss_pred             EEccCCCCCCChhhHHHHHHHHHhcCCcEEEEccCCCCCCCC--CcccCCCceEEEeecccccceEEEEEeCCCeeeeee
Q 042259          275 SISLGSPSLPFFADAMATAAFTASQKGILVSCSAGNSGPNSS--TLANEAPWMLTVGASTIDRSIVALTQLGNQETYDGE  352 (745)
Q Consensus       275 n~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~  352 (745)
                      |+||+....   ......+...+.++|+++|+||||++....  .+++..+++++|++........              
T Consensus       137 ~~s~~~~~~---~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~--------------  199 (309)
T d2ixta1         137 SMSLGSSAN---NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNG--------------  199 (309)
T ss_dssp             EECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETT--------------
T ss_pred             ccccccccc---ccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccc--------------
Confidence            999997642   223334445778899999999999987654  3456678888888753211000              


Q ss_pred             eccCCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc
Q 042259          353 TIFQPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT  432 (745)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~  432 (745)
                                                              ...                                     
T Consensus       200 ----------------------------------------~~~-------------------------------------  202 (309)
T d2ixta1         200 ----------------------------------------TYR-------------------------------------  202 (309)
T ss_dssp             ----------------------------------------EEE-------------------------------------
T ss_pred             ----------------------------------------ccc-------------------------------------
Confidence                                                    000                                     


Q ss_pred             cccCccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEecc
Q 042259          433 VADNHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAW  512 (745)
Q Consensus       433 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~  512 (745)
                                                                .........++++|+..  ....||||+|||.+|+++.
T Consensus       203 ------------------------------------------~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~  238 (309)
T d2ixta1         203 ------------------------------------------VADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTW  238 (309)
T ss_dssp             ------------------------------------------ECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEEC
T ss_pred             ------------------------------------------ccccccccccccccccc--cCCCcceeecCCCceeeec
Confidence                                                      00111344667777776  4568999999999999998


Q ss_pred             CCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCC
Q 042259          513 PFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAG  592 (745)
Q Consensus       513 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G  592 (745)
                      +.         ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++++..+..    .....+++.+|||
T Consensus       239 ~~---------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~----g~~~~~~~~~g~G  305 (309)
T d2ixta1         239 YN---------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY----GAAIGDDYASGFG  305 (309)
T ss_dssp             TT---------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST----TCCSSSBTTTBTC
T ss_pred             CC---------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc----CCccCCCcccCCC
Confidence            87         7899999999999999999999999999999999999999999987654321    1234567788999


Q ss_pred             CCCc
Q 042259          593 HVNP  596 (745)
Q Consensus       593 ~vn~  596 (745)
                      ++|+
T Consensus       306 ~~~v  309 (309)
T d2ixta1         306 FARV  309 (309)
T ss_dssp             BCCC
T ss_pred             EecC
Confidence            9874


No 9  
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}
Probab=100.00  E-value=6.6e-43  Score=364.49  Aligned_cols=238  Identities=32%  Similarity=0.437  Sum_probs=192.7

Q ss_pred             CCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhcc
Q 042259          138 DSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAAG  217 (745)
Q Consensus       138 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiiag  217 (745)
                      ...+|+||+|+|||||||++||+|.++                       +.....+.   ..+.|.++|||||||||+|
T Consensus        26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~-----------------------~~~~~~~~---~~~~d~~gHGT~VAgiia~   79 (279)
T d2pwaa1          26 DESAGQGSCVYVIDTGIEASHPEFEGR-----------------------AQMVKTYY---YSSRDGNGHGTHCAGTVGS   79 (279)
T ss_dssp             CTTTTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEESS---SCSSCSSSHHHHHHHHHHC
T ss_pred             cCCCCCCeEEEEECcCCCCCChhhcCC-----------------------ceeccCCC---CCcccccCccccccccccc
Confidence            445999999999999999999999864                       11122222   3456789999999999998


Q ss_pred             cccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhC-------CCcEEEEccCCCCCCChhhHH
Q 042259          218 NFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEE-------GVDVLSISLGSPSLPFFADAM  290 (745)
Q Consensus       218 ~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~-------g~dVIn~S~G~~~~~~~~~~~  290 (745)
                      ..              .|+||+|+|+.+|++........+.+..+++++...       +++|+|+|||....    +.+
T Consensus        80 ~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~~~----~~~  141 (279)
T d2pwaa1          80 RT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYS----SSV  141 (279)
T ss_dssp             TT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEECC----HHH
T ss_pred             cc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCccc----ccc
Confidence            63              699999999999999834447788889999988764       34599999997543    344


Q ss_pred             HHHHHHHhcCCcEEEEccCCCCCCCCC-cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceeeEe
Q 042259          291 ATAAFTASQKGILVSCSAGNSGPNSST-LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPLVY  369 (745)
Q Consensus       291 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (745)
                      ..++..+.++|+++|+||||++.+... .+...|++|+|||.+                                     
T Consensus       142 ~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~-------------------------------------  184 (279)
T d2pwaa1         142 NSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD-------------------------------------  184 (279)
T ss_dssp             HHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC-------------------------------------
T ss_pred             chhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEe-------------------------------------
Confidence            455557889999999999999876543 567789999999842                                     


Q ss_pred             cCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchHhH
Q 042259          370 PGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYAAG  449 (745)
Q Consensus       370 ~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g  449 (745)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (279)
T d2pwaa1         185 --------------------------------------------------------------------------------  184 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCccCCCcccceeee
Q 042259          450 ERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEENITNTKSTFTMI  529 (745)
Q Consensus       450 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~  529 (745)
                                                 ..+.++.||++||..        ||+|||.+|+++++.         +.|..+
T Consensus       185 ---------------------------~~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~---------~~~~~~  220 (279)
T d2pwaa1         185 ---------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIG---------GSTRSI  220 (279)
T ss_dssp             ---------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETT---------TEEEEE
T ss_pred             ---------------------------ecCCCccccCCCCcc--------ccccccccccccccC---------CcccCC
Confidence                                       123678999999976        999999999999987         789999


Q ss_pred             ccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCc
Q 042259          530 SGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNP  596 (745)
Q Consensus       530 sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~  596 (745)
                      +|||||||+|||++|||+|++|.++++++|. |++||++.               .....|+|++|+
T Consensus       221 sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~---------------~~~~~g~g~~n~  271 (279)
T d2pwaa1         221 SGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG---------------DLSNIPFGTVNL  271 (279)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES---------------CCBSCCTTSCCE
T ss_pred             CcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC---------------CCCCCCCCChhh
Confidence            9999999999999999999999999888775 67788753               234689999986


No 10 
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}
Probab=100.00  E-value=8.8e-42  Score=362.87  Aligned_cols=292  Identities=27%  Similarity=0.349  Sum_probs=218.9

Q ss_pred             CCccC-CCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhh
Q 042259          134 GFWKD-SNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTA  212 (745)
Q Consensus       134 ~~~~~-~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVA  212 (745)
                      .+|.. |+||+||+|||||||||++||+|....      .           ...++...+.+... .++.|..|||||||
T Consensus        12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~-----------~~~~~~~~~~~~~~-~~~~d~~gHGT~vA   73 (318)
T d1wmda2          12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------A-----------FRGKITALYALGRT-NNANDTNGHGTHVA   73 (318)
T ss_dssp             HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------T-----------TTTCEEEEEETTTT-TCCCCSSSHHHHHH
T ss_pred             hHHHccCccccCeEEEEEcCCcCCCCcccccCc------c-----------cCCcEEeecCCCCC-CCCCCCCCCCccce
Confidence            36775 999999999999999999999997531      0           22345555555433 56678899999999


Q ss_pred             hhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCC---CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCChhhH
Q 042259          213 STAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLG---CPESIVNAAIDAAVEEGVDVLSISLGSPSLPFFADA  289 (745)
Q Consensus       213 Giiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~  289 (745)
                      |||+|+...           ..||||+|+|+.+|++. ..+   .....+..+++++...+++|+|+|||..........
T Consensus        74 giiag~~~~-----------~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~~~~~~~  141 (318)
T d1wmda2          74 GSVLGNGST-----------NKGMAPQANLVFQSIMD-SGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTD  141 (318)
T ss_dssp             HHHHCCSSS-----------SCCSSTTSEEEEEECCC-TTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTCCCHH
T ss_pred             eeccccccc-----------cchhhhcccceeeeeee-ecccccccchhhHHHHHHHHhcCCceeecccccccccccchh
Confidence            999987422           26999999999999998 443   344557889999999999999999998754444444


Q ss_pred             HHHHHHHHhcCCcEEEEccCCCCCCCCCcc--cCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCCCceee
Q 042259          290 MATAAFTASQKGILVSCSAGNSGPNSSTLA--NEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPSKQLPL  367 (745)
Q Consensus       290 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (745)
                      ...+...+.++++++|+|+||.|.......  ...++++++.+........                             
T Consensus       142 ~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----------------------------  192 (318)
T d1wmda2         142 SRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF-----------------------------  192 (318)
T ss_dssp             HHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-----------------------------
T ss_pred             HHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc-----------------------------
Confidence            555555677899999999999998765543  3566777776642111000                             


Q ss_pred             EecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEEEEchH
Q 042259          368 VYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAVYVSYA  447 (745)
Q Consensus       368 ~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~  447 (745)
                                  .                                                                   
T Consensus       193 ------------~-------------------------------------------------------------------  193 (318)
T d1wmda2         193 ------------G-------------------------------------------------------------------  193 (318)
T ss_dssp             ------------C-------------------------------------------------------------------
T ss_pred             ------------c-------------------------------------------------------------------
Confidence                        0                                                                   


Q ss_pred             hHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCCCc---cCCCccc
Q 042259          448 AGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFSEE---NITNTKS  524 (745)
Q Consensus       448 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~~~---~~~~~~~  524 (745)
                                               ........+..||++||..  ....|||++|||.+|+++......   .......
T Consensus       194 -------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~  246 (318)
T d1wmda2         194 -------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS  246 (318)
T ss_dssp             -------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGSSEEEET
T ss_pred             -------------------------cccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCccccCCCc
Confidence                                     0011223667899999987  567899999999999998776441   1122235


Q ss_pred             ceeeeccccchhHHHHHHHHHHHhhCC-----CCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCCCCCccCC
Q 042259          525 TFTMISGTSMSCPHLSGIAALLKSAHP-----DWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAGHVNPSKA  599 (745)
Q Consensus       525 ~y~~~sGTSmAaP~VAG~aALl~q~~p-----~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~A  599 (745)
                      .|..++|||||||+|||++|||+|++|     .+++.+||++|++||+++..           +.++..||||+||+.+|
T Consensus       247 ~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~-----------~~~~~~~G~G~ld~~~A  315 (318)
T d1wmda2         247 KYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPNGNQGWGRVTLDKS  315 (318)
T ss_dssp             TEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSCTTTTTCBCCHHHH
T ss_pred             ceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-----------CCCCCCeeeceecHHHH
Confidence            678899999999999999999999754     67899999999999997643           34567899999999999


Q ss_pred             CC
Q 042259          600 ND  601 (745)
Q Consensus       600 ~~  601 (745)
                      |+
T Consensus       316 l~  317 (318)
T d1wmda2         316 LN  317 (318)
T ss_dssp             HT
T ss_pred             hC
Confidence            86


No 11 
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=1.1e-39  Score=348.94  Aligned_cols=284  Identities=17%  Similarity=0.221  Sum_probs=192.1

Q ss_pred             CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhh
Q 042259          132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHT  211 (745)
Q Consensus       132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThV  211 (745)
                      ...+|..+++|+||+|||||||||++||+|.++....  ..|.  +.           .............|..+|||||
T Consensus        26 ~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~~~--~~~~--~~-----------~~~~~~~~~~~~~~~~gHGT~v   90 (334)
T d1p8ja2          26 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPG--ASFD--VN-----------DQDPDPQPRYTQMNDNRHGTRC   90 (334)
T ss_dssp             CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCGG--GCEE--TT-----------TTBSCCCCCCCTTCTTCHHHHH
T ss_pred             HHHHHhcCCCCCCeEEEEEccCCCCCChhHhhccccC--CCcc--cc-----------CCCCccccccccccCccchhhh
Confidence            3459999999999999999999999999998642110  0000  00           0000011113345688999999


Q ss_pred             hhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCC-C----
Q 042259          212 ASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPSLP-F----  285 (745)
Q Consensus       212 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~-~----  285 (745)
                      ||||+|...++.        ...|+||+++++.+|+.. .   ...+.+.++.++++ ++++++|+|||..... .    
T Consensus        91 Agiia~~~~n~~--------~~~g~a~~a~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~~~~~~~  158 (334)
T d1p8ja2          91 AGEVAAVANNGV--------CGVGVAYNARIGGVRMLD-G---EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGP  158 (334)
T ss_dssp             HHHHHCCSSSSS--------SCCCTTTTSEEEEEECSS-S---CCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCBCC
T ss_pred             hhhhhhcccccc--------ccccccccccccchhhcc-c---cccchHHHHHHHhhhcCCcEEeCCCCCCCcCcccCCc
Confidence            999998853321        136999999999999987 2   33455667777765 6799999999975311 0    


Q ss_pred             ----hhhHHHHHHHHHhcCCcEEEEccCCCCCCCCCcc----cCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCC
Q 042259          286 ----FADAMATAAFTASQKGILVSCSAGNSGPNSSTLA----NEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQP  357 (745)
Q Consensus       286 ----~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (745)
                          ...........+..+|+++|+||||++.......    ...+.+++|++.+                         
T Consensus       159 ~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------  213 (334)
T d1p8ja2         159 ARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT-------------------------  213 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC-------------------------
T ss_pred             cchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccc-------------------------
Confidence                1122333334556799999999999876543322    1334455555532                         


Q ss_pred             CCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCc
Q 042259          358 KDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNH  437 (745)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~  437 (745)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (334)
T d1p8ja2         214 --------------------------------------------------------------------------------  213 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCc-----cEEecc
Q 042259          438 VLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGV-----SILAAW  512 (745)
Q Consensus       438 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~-----~I~sa~  512 (745)
                                                             ..+....||++|+...      .+..+||.     .+.+..
T Consensus       214 ---------------------------------------~~g~~~~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~  248 (334)
T d1p8ja2         214 ---------------------------------------QFGNVPWYSEACSSTL------ATTYSSGNQNEKQIVTTDL  248 (334)
T ss_dssp             ---------------------------------------TTSCCCTTCCBCTTCC------EEEECCCSTTSCCEEEEET
T ss_pred             ---------------------------------------cCCceeeecccCCccc------ccccccccccccccccccc
Confidence                                                   1124455566665441      13444442     233333


Q ss_pred             CCCCccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCcccCCCCCCCCCcccCCC
Q 042259          513 PFSEENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKPIMNHHLLPADLFAVGAG  592 (745)
Q Consensus       513 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G  592 (745)
                      ..         ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++.......+.........+..||||
T Consensus       249 ~~---------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G  319 (334)
T d1p8ja2         249 RQ---------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYG  319 (334)
T ss_dssp             TT---------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBTC
T ss_pred             CC---------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccCCCcccCCCCcce
Confidence            33         678899999999999999999999999999999999999999998765544443333333445689999


Q ss_pred             CCCccCCCC
Q 042259          593 HVNPSKAND  601 (745)
Q Consensus       593 ~vn~~~A~~  601 (745)
                      +||+++||+
T Consensus       320 ~lna~~Av~  328 (334)
T d1p8ja2         320 LLDAGAMVA  328 (334)
T ss_dssp             BCCHHHHHH
T ss_pred             EeCHHHHHH
Confidence            999999987


No 12 
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=2.8e-39  Score=346.63  Aligned_cols=283  Identities=18%  Similarity=0.214  Sum_probs=201.8

Q ss_pred             CCCCccCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCC---CCCCCCCCCh
Q 042259          132 NSGFWKDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKS---EPPIDNDGHG  208 (745)
Q Consensus       132 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~---~~~~d~~gHG  208 (745)
                      ...+|..+++|+||+|+|||||||++||+|.++...                     .+.++|.+..   ....++.+||
T Consensus        35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~HG   93 (339)
T d2id4a2          35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA---------------------EGSWDFNDNTNLPKPRLSDDYHG   93 (339)
T ss_dssp             CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG---------------------GGCEETTTTBSCCCCCSTTTTHH
T ss_pred             HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc---------------------ccccccccCCCccCCCccccccc
Confidence            456899999999999999999999999999864111                     0123343321   3345678999


Q ss_pred             hhhhhhhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCC----
Q 042259          209 THTASTAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVEEGVDVLSISLGSPSLP----  284 (745)
Q Consensus       209 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~----  284 (745)
                      |||||+|+|....+        ..+.||||+|+|+.+++.. . .....++..++.++++. .+|+|+|||.....    
T Consensus        94 T~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~~~~  162 (339)
T d2id4a2          94 TRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILS-G-DITTEDEAASLIYGLDV-NDIYSCSWGPADDGRHLQ  162 (339)
T ss_dssp             HHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTT-S-CCCHHHHHHHTTTTTTT-CSEEEECEESCCSSSCCB
T ss_pred             ceeeeccccccccc--------ccccccccccccceEEEee-c-cccchHHHHHHHHHHhh-CCEEeccCCCCCCccccc
Confidence            99999999875322        1247999999999999876 2 35666777888777665 48999999875311    


Q ss_pred             ----ChhhHH-HHHHHHHhcCCcEEEEccCCCCCCCCCc--cc--CCCceEEEeecccccceEEEEEeCCCeeeeeeecc
Q 042259          285 ----FFADAM-ATAAFTASQKGILVSCSAGNSGPNSSTL--AN--EAPWMLTVGASTIDRSIVALTQLGNQETYDGETIF  355 (745)
Q Consensus       285 ----~~~~~~-~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~  355 (745)
                          .....+ ..+...+..+|+++|+||||++......  +.  ..+.+++|+++                        
T Consensus       163 ~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  218 (339)
T d2id4a2         163 GPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI------------------------  218 (339)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE------------------------
T ss_pred             CccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc------------------------
Confidence                111222 2233355579999999999987654322  11  22334444442                        


Q ss_pred             CCCCCCCCceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCcccccc
Q 042259          356 QPKDFPSKQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVAD  435 (745)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~  435 (745)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (339)
T d2id4a2         219 --------------------------------------------------------------------------------  218 (339)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccEEEEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCC
Q 042259          436 NHVLPAVYVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFS  515 (745)
Q Consensus       436 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~  515 (745)
                                                              ...+..+.||++|+..    ...++..+||..+.++....
T Consensus       219 ----------------------------------------~~~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~~~  254 (339)
T d2id4a2         219 ----------------------------------------DHKDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDING  254 (339)
T ss_dssp             ----------------------------------------CTTSCCCTTCCCCTTE----EEEEECSBTTBCEEEECSTT
T ss_pred             ----------------------------------------cccccccccccccCcc----ceeeeeeccccccceeccCC
Confidence                                                    1223556777777654    34567888999998876552


Q ss_pred             CccCCCcccceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHhcccccccCCCCc-ccCCCCCCCCCcccCCCCC
Q 042259          516 EENITNTKSTFTMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADIVNLEGKP-IMNHHLLPADLFAVGAGHV  594 (745)
Q Consensus       516 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~-~~~~~~~~~~~~~~G~G~v  594 (745)
                              ..|..++|||||||||||++|||+|++|+|++.|||.+|++||+.++..... +.+....+..+..||||+|
T Consensus       255 --------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~l  326 (339)
T d2id4a2         255 --------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKI  326 (339)
T ss_dssp             --------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBC
T ss_pred             --------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCCccchhh
Confidence                    5688999999999999999999999999999999999999999987644322 2222233445667999999


Q ss_pred             CccCCCCC
Q 042259          595 NPSKANDP  602 (745)
Q Consensus       595 n~~~A~~~  602 (745)
                      |+.+||+.
T Consensus       327 n~~~Av~~  334 (339)
T d2id4a2         327 DAHKLIEM  334 (339)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999983


No 13 
>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}
Probab=99.96  E-value=1.7e-31  Score=287.41  Aligned_cols=313  Identities=19%  Similarity=0.211  Sum_probs=185.9

Q ss_pred             cCCCCCCccEEEEecCCCCCCCCCCCCCCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhhhhc
Q 042259          137 KDSNLGKGVIIGVLDMGITPGHPSFSDEGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTASTAA  216 (745)
Q Consensus       137 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAGiia  216 (745)
                      .++++|+||+|||||||||++||+|.+.        |+..                .+......+.+..+|+|||+|+++
T Consensus        18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~----------------~~~~~~~~~~~~~g~~~~~~g~~~   73 (357)
T d1t1ga_          18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FASL----------------GVSAPQVVSVSVDGATNQPTGDPN   73 (357)
T ss_dssp             CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHT----------------TCCCCCEEEEESTTCCCCCCSCTT
T ss_pred             CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhhc----------------CCCCCCCceeCCCCCCCCCCCccc
Confidence            3689999999999999999999999742        1100                000000122346678888888776


Q ss_pred             ccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHH---hCCCcEEEEccCCCCC---CChhhHH
Q 042259          217 GNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAV---EEGVDVLSISLGSPSL---PFFADAM  290 (745)
Q Consensus       217 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~---~~g~dVIn~S~G~~~~---~~~~~~~  290 (745)
                      +......    .....+.||||+|+|+.+|+.. .    ...++.++++++   +++++|||+|||....   ......+
T Consensus        74 ~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~-~----~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~  144 (357)
T d1t1ga_          74 GPDGEVE----LDIEVAGALAPGAKIAVYFAPN-T----DAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAM  144 (357)
T ss_dssp             STHHHHH----HHHHHHHHHSTTSEEEEEECCS-S----HHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHHH
T ss_pred             ccccccc----CCcccceeecccCeEEEEeccc-C----CCchHHHHHHHHHhhhcCCeEEecccccCcCccccchHHHH
Confidence            5432110    0011247999999999999987 2    334455555554   4689999999997532   2233455


Q ss_pred             HHHHHHHhcCCcEEEEccCCCCCCCCC--------cccCCCceEEEeecccccceEEEEEeCCCeeeeeeeccCCCCCCC
Q 042259          291 ATAAFTASQKGILVSCSAGNSGPNSST--------LANEAPWMLTVGASTIDRSIVALTQLGNQETYDGETIFQPKDFPS  362 (745)
Q Consensus       291 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (745)
                      ......+..+|+++|+|+||+|.....        .+...+++++|++.......        +. ....+.+....   
T Consensus       145 ~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~-~~~~~~~~~~~---  212 (357)
T d1t1ga_         145 NRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASA--------GR-IERETVWNDGP---  212 (357)
T ss_dssp             HHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECS--------SC-EEEEEECBCHH---
T ss_pred             HHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCC--------Cc-cccceeccccc---
Confidence            566667778999999999999854322        23466888998885322110        00 00000000000   


Q ss_pred             CceeeEecCCCCCCCCccCCCCCCCCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccccccCccccEE
Q 042259          363 KQLPLVYPGVKNSSAAFCLPETLKSIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGTVADNHVLPAV  442 (745)
Q Consensus       363 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~  442 (745)
                         . ...                            ..+                 +.                      
T Consensus       213 ---~-~~~----------------------------~~~-----------------g~----------------------  221 (357)
T d1t1ga_         213 ---D-GGS----------------------------TGG-----------------GV----------------------  221 (357)
T ss_dssp             ---H-HCB----------------------------CCC-----------------EE----------------------
T ss_pred             ---c-ccc----------------------------ccC-----------------Cc----------------------
Confidence               0 000                            000                 00                      


Q ss_pred             EEchHhHHHHHHHHhcCCCCeEEEEecceEecCCCCCceecccCCCCCCCCCCCccCceEeCCccE--EeccCCCCccCC
Q 042259          443 YVSYAAGERIKAYINSTSSPTASIVFKGTVIGKKSAPEVAVFSSRGPNTASPGILKPDIIGPGVSI--LAAWPFSEENIT  520 (745)
Q Consensus       443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I--~sa~~~~~~~~~  520 (745)
                                            +..+   ............+++.+++.  .++.|||+.+++...  .+....      
T Consensus       222 ----------------------s~~~---~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~~------  268 (357)
T d1t1ga_         222 ----------------------SRIF---PLPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVID------  268 (357)
T ss_dssp             ----------------------CSSS---CCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEET------
T ss_pred             ----------------------cccc---ccCcccccccccccccCCCC--CCceecceecccCCCCceEEecC------
Confidence                                  0000   00001123556777777776  789999999987654  444444      


Q ss_pred             CcccceeeeccccchhHHHHHHHHHHHhhCCC---CCHHHHHHHHhcccccccCCCCcccCC----CCCCCCCcccCCCC
Q 042259          521 NTKSTFTMISGTSMSCPHLSGIAALLKSAHPD---WSPAAIKSAIMTTADIVNLEGKPIMNH----HLLPADLFAVGAGH  593 (745)
Q Consensus       521 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---~s~~~ik~~L~~TA~~~~~~g~~~~~~----~~~~~~~~~~G~G~  593 (745)
                         +.|..++|||||||||||++|||+|+++.   +...+++.+...+.+++..........    ...+.++..+|||+
T Consensus       269 ---~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~~tG~G~  345 (357)
T d1t1ga_         269 ---GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCTGLGS  345 (357)
T ss_dssp             ---TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBTTTBTCE
T ss_pred             ---CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCCCccCch
Confidence               78999999999999999999999998753   233444443333333321110000000    13455677899999


Q ss_pred             CCccCCCC
Q 042259          594 VNPSKAND  601 (745)
Q Consensus       594 vn~~~A~~  601 (745)
                      +|+.++++
T Consensus       346 ~n~~~~~~  353 (357)
T d1t1ga_         346 PIGIRLLQ  353 (357)
T ss_dssp             ECHHHHHH
T ss_pred             hhHHHHHH
Confidence            99887765


No 14 
>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}
Probab=99.94  E-value=4.7e-28  Score=261.74  Aligned_cols=161  Identities=17%  Similarity=0.209  Sum_probs=114.9

Q ss_pred             CCCCCccEEEEecCCCCCC-CCCCCC----CCCCCCCCccccccccCCcccCcceeeeeeCCCCCCCCCCCCCChhhhhh
Q 042259          139 SNLGKGVIIGVLDMGITPG-HPSFSD----EGMPPPPAKWKGKCELEGANCNNKIIGARNFLNKSEPPIDNDGHGTHTAS  213 (745)
Q Consensus       139 ~~~G~gv~VaVIDtGid~~-Hp~f~~----~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~d~~gHGThVAG  213 (745)
                      ..+|+||+|||||+|.++. |+||..    .+++.               ++     ....    ....+..+||||+++
T Consensus        21 ~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~---------------~~-----~~~~----~~~~~~~~~~~~~~~   76 (369)
T d1ga6a_          21 APTAANTTVGIITIGGVSQTLQDLQQFTSANGLAS---------------VN-----TQTI----QTGSSNGDYSDDQQG   76 (369)
T ss_dssp             SCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCC---------------CC-----EEEE----ECSCTTSCCCBCHHH
T ss_pred             CCCCCCcEEEEEecCCcccCHHHHHHHHHhcCCCC---------------CC-----CCee----cCCCCCCCCCCCCCc
Confidence            4589999999999998754 666751    11110               00     0000    122346789999999


Q ss_pred             hhcccccCCCcccCCCCcceeeeccCceEEeeecccCCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCC----CCChhh
Q 042259          214 TAAGNFVNGANLFGQANGTAAGMAPLAHLAIYKVCETDLGCPESIVNAAIDAAVE-EGVDVLSISLGSPS----LPFFAD  288 (745)
Q Consensus       214 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~----~~~~~~  288 (745)
                      ++++....         ..+.||||+|+|+.++++.........+++++|+||++ ++++|||+|||...    .....+
T Consensus        77 ~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~  147 (369)
T d1ga6a_          77 QGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQ  147 (369)
T ss_dssp             HHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHH
T ss_pred             ceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHH
Confidence            98765311         12479999999999999983333777889999999986 57999999999753    234455


Q ss_pred             HHHHHHHHHhcCCcEEEEccCCCCCCCC-------------CcccCCCceEEEeecc
Q 042259          289 AMATAAFTASQKGILVSCSAGNSGPNSS-------------TLANEAPWMLTVGAST  332 (745)
Q Consensus       289 ~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~p~vitVga~~  332 (745)
                      .+..++.++..+|++||+||||+|....             ..+...+++++|+++.
T Consensus       148 ~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~  204 (369)
T d1ga6a_         148 AEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT  204 (369)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence            6667777888999999999999986432             2335678999999854


No 15 
>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}
Probab=98.85  E-value=3.6e-09  Score=82.97  Aligned_cols=70  Identities=13%  Similarity=0.209  Sum_probs=55.6

Q ss_pred             CceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEE
Q 042259           32 LQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYRNVISGFAARLTAEEVKAMETKSGFISAR  111 (745)
Q Consensus        32 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~  111 (745)
                      +++|||.||++.....   ...+..++.             ..+.++.+.|+ .++||+++|++++++.|+++|+|.+||
T Consensus         1 e~~YIV~fK~~~~~~~---~~~~~~~v~-------------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE   63 (71)
T d1scjb_           1 EKKYIVGFKQTMSAMS---SAKKKDVIS-------------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVE   63 (71)
T ss_dssp             CEEEEEEECSSSSCCS---HHHHHHHHH-------------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEE
T ss_pred             CCcEEEEECCCCChHH---HHHHHHHHH-------------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEe
Confidence            4799999999976444   222222222             24779999998 799999999999999999999999999


Q ss_pred             EccccCC
Q 042259          112 VENILEP  118 (745)
Q Consensus       112 ~~~~~~~  118 (745)
                      +++.++.
T Consensus        64 ~D~v~~a   70 (71)
T d1scjb_          64 EDHIAHE   70 (71)
T ss_dssp             ECCEEEE
T ss_pred             CCcEEEc
Confidence            9987653


No 16 
>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}
Probab=98.63  E-value=1.5e-08  Score=79.65  Aligned_cols=67  Identities=16%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             CceEEEEeCCCCCCCCccccccHHHHHHhhcccccccccccccccceEEEec-ceeeEEEEEeCHHHHHHhhcCCC--eE
Q 042259           32 LQTYIVHVRKPKQEGNFSIKLDLDNWYRTFLPDNISKSIDAHHRSRMVYGYR-NVISGFAARLTAEEVKAMETKSG--FI  108 (745)
Q Consensus        32 ~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~y~-~~~~g~s~~l~~~~~~~L~~~p~--V~  108 (745)
                      .|+|||.||++.....   ...+..++..             .+..+.+.|. +.|+||+++++++.+++|+++|+  |.
T Consensus         2 aG~YIVvlK~~~~~~~---~~~~~~~~~~-------------~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~   65 (72)
T d1v5ib1           2 AGKFIVIFKNDVSEDK---IRETKDEVIA-------------EGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLID   65 (72)
T ss_dssp             CEEEEEEECTTCCHHH---HHHHHHHHHH-------------HTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEE
T ss_pred             CccEEEEECCCCCHHH---HHHHHHHHHh-------------cCCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCc
Confidence            4899999999875322   2333333332             2456667777 68999999999999999999665  99


Q ss_pred             EEEEcc
Q 042259          109 SARVEN  114 (745)
Q Consensus       109 ~v~~~~  114 (745)
                      +||++.
T Consensus        66 yVE~D~   71 (72)
T d1v5ib1          66 SIEEDH   71 (72)
T ss_dssp             EEEECC
T ss_pred             eECCCC
Confidence            999986


No 17 
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=96.31  E-value=0.018  Score=47.38  Aligned_cols=90  Identities=10%  Similarity=0.035  Sum_probs=61.3

Q ss_pred             cCCCceeeecCCccEEEEEEEEecCCCCee-EEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCCCCeEEEE
Q 042259          648 LNYPSFSVKLGSSPQTYNRTVTNVGQDNSF-YTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSNASSVQGY  726 (745)
Q Consensus       648 ln~ps~~~~~~~~~~~~~~tv~n~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~  726 (745)
                      +..|++.+.-+ ...+++.+|+|.|+...+ -++.+..|.|-+++..  ...+.+ ||+++++++++++.......|.=.
T Consensus         6 ~t~p~~~v~pG-~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~--~~~L~p-G~s~~~~~~Vt~p~~a~~G~Y~i~   81 (103)
T d1w8oa1           6 FTIPDVALEPG-QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGS--VEPLMP-GRQAKGQVTITVPAGTTPGRYRVG   81 (103)
T ss_dssp             EECCCEEECTT-CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEE--ECCBCT-TCEEEEEEEEECCTTCCCEEEEEE
T ss_pred             ccCcceeeCCC-CeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCc--ceeeCC-CCcEEEEEEEECCCCCCCceEEEE
Confidence            34466555433 369999999999987644 4678889999877544  445666 999999999999876442344444


Q ss_pred             EEEEcCceEEEeeEE
Q 042259          727 LSWVSATHTVRSPIA  741 (745)
Q Consensus       727 ~~~~~~~~~v~~P~~  741 (745)
                      +..+++.......+-
T Consensus        82 ~~a~~~~~~~s~t~t   96 (103)
T d1w8oa1          82 ATLRTSAGNASTTFT   96 (103)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEEeCCcceEEEEE
Confidence            666665554444443


No 18 
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.98  E-value=0.0036  Score=57.38  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=55.4

Q ss_pred             CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCCCccc-------------cc-------------------
Q 042259          387 SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELFDYGT-------------VA-------------------  434 (745)
Q Consensus       387 ~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-------------~~-------------------  434 (745)
                      ..+++|||+|+ ++|.+.+.+|..+++..||.|+|+|.+.......             .+                   
T Consensus        58 ~~~v~GkI~l~-r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~  136 (193)
T d1de4c2          58 YTPVNGSIVIV-RAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSR  136 (193)
T ss_dssp             SSCCTTSEEEE-ESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCC
T ss_pred             ccccCceEEEE-eCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccc
Confidence            35789999999 9999999999999999999999999764321000             00                   


Q ss_pred             --cCccccEEEEchHhHHHHHHHHh
Q 042259          435 --DNHVLPAVYVSYAAGERIKAYIN  457 (745)
Q Consensus       435 --~~~~~p~~~i~~~~g~~l~~~~~  457 (745)
                        ....||+.-|+..|++.|+..+.
T Consensus       137 ~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         137 SSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             CTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             cCCCCcCCeeeCCHHHHHHHHHHcC
Confidence              12347999999999999998774


No 19 
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.04  E-value=0.017  Score=54.53  Aligned_cols=71  Identities=23%  Similarity=0.292  Sum_probs=55.9

Q ss_pred             CCcccceEEEEeeCCCcchhhhhhhHhhcCceEEEEecCCCC-------------------------------Ccccc--
Q 042259          387 SIDVKGKVVLCQRGGGTQRIRKGKDVKDAGGAAMILMNDELF-------------------------------DYGTV--  433 (745)
Q Consensus       387 ~~~~~g~ivl~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-------------------------------~~~~~--  433 (745)
                      .-+++|||+|+ ++|.+.+.+|..+++..||+|+|+|++...                               |....  
T Consensus        76 gi~~~gkIvl~-ryG~~~~~~Kv~~A~~~GA~GviiysDP~d~~~~g~~~yP~~~~~p~~~vqrgsv~~~~~~GDplTPg  154 (233)
T d3bi1a2          76 KINCSGKIVIA-RYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPG  154 (233)
T ss_dssp             CCCCTTCEEEE-ECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTSSSBCCTTCCCCEECCCCTTCCSTTCTT
T ss_pred             CCcccceEEEE-eCCCCchhHHHHHHHHcCceEEEEecChHHccCcccccccCCccCCCCceeEeeeeecCCCCCCCCCC
Confidence            45789999999 999999999999999999999999986310                               00000  


Q ss_pred             ---------------ccCccccEEEEchHhHHHHHHHHhc
Q 042259          434 ---------------ADNHVLPAVYVSYAAGERIKAYINS  458 (745)
Q Consensus       434 ---------------~~~~~~p~~~i~~~~g~~l~~~~~~  458 (745)
                                     .....||+.-|+..|+..|+..|..
T Consensus       155 ~ps~~~~~r~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~G  194 (233)
T d3bi1a2         155 YPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMGG  194 (233)
T ss_dssp             SCCCTTCCCCCGGGCSSCCSSCEEEECHHHHHHHHTTBCB
T ss_pred             CCCCCCCcccChhHhcCCCCCceeccCHHHHHHHHHHcCC
Confidence                           0124779999999999999988753


No 20 
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=68.58  E-value=8.6  Score=31.56  Aligned_cols=51  Identities=16%  Similarity=0.113  Sum_probs=43.6

Q ss_pred             cEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEe
Q 042259          661 PQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIR  714 (745)
Q Consensus       661 ~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~  714 (745)
                      .++..++|+|.++....|++....|.-+.  |.|..=.+.+ +++..++|++.+
T Consensus        24 ~~~~~l~l~N~s~~~vafKvktt~p~~y~--v~P~~G~i~p-~~~~~i~V~~~~   74 (124)
T d1grwa_          24 KHTYHIKVINSSARRIGYGIKTTNMKRLG--VDPPCGVLDP-KEAVLLAVSCDA   74 (124)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEESCTTTEE--EESSEEEECT-TCEEEEEEEECC
T ss_pred             EEEEEEEEECCCCCeEEEEEEeCCCceEE--EECCCCEECC-CCEEEEEEEEec
Confidence            57778999999999999999999887654  5788777777 999999999976


No 21 
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=66.33  E-value=17  Score=28.87  Aligned_cols=52  Identities=10%  Similarity=0.077  Sum_probs=42.0

Q ss_pred             EEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEecc
Q 042259          662 QTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQ  716 (745)
Q Consensus       662 ~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~  716 (745)
                      .+-+.+++|.++....|++....|.-+.  |.|..-.+.+ +++..+.|+..+..
T Consensus        18 g~~~~~l~N~s~~~vafKiktt~~~~y~--V~P~~G~I~P-~~~~~i~I~~~~~~   69 (109)
T d1m1sa_          18 GNSTHNITSESDSRLAFKVKSSNNEHYR--VRPVYGFVDA-KGKSKLDINRLPGP   69 (109)
T ss_dssp             EEEEEEEEECSSSEEEEEEEESCTTTEE--EECSEEEECT-TCEEEEEEEECSCC
T ss_pred             CcEEEEEECCCCCcEEEEEEcCCCCeEE--EeCCeeEECC-CCeEEEEEEeCCCC
Confidence            3456899999999999999998887654  5788777777 99999999886544


No 22 
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=63.26  E-value=13  Score=29.57  Aligned_cols=51  Identities=8%  Similarity=0.002  Sum_probs=41.1

Q ss_pred             EEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEec
Q 042259          662 QTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRD  715 (745)
Q Consensus       662 ~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~  715 (745)
                      .+-+.+|+|.++....|++....|.-+  .|.|..-.+.+ |++.++.|+..+.
T Consensus        15 g~~~~~l~N~s~~~vafKvKtt~~~~y--~V~P~~G~i~P-~~~~~I~I~~~~~   65 (107)
T d1rowa_          15 VSSTHKLVNGGAEKIVFKIKSSNNNEY--RIAPVFGFVDP-SGSKDVVITRTAG   65 (107)
T ss_dssp             EEEEEEEEECSSSCEEEEEEESCSSSE--EEECSEEEECT-TEEEEEEEEECSC
T ss_pred             CeEEEEEEcCCCCeEEEEEEcCCCCeE--EEECCEEEECC-CCEEEEEEEeCCC
Confidence            455689999999999999999888755  45788877777 9999988876553


No 23 
>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=55.00  E-value=14  Score=29.55  Aligned_cols=57  Identities=7%  Similarity=-0.045  Sum_probs=40.4

Q ss_pred             CccEEEEEEEEecCCCCeeEEEEEEC-------CCCeEEEEEcCeEEEeeCCceEEEEEEEEecc
Q 042259          659 SSPQTYNRTVTNVGQDNSFYTHHIIV-------PEGVKIIVQPDKISFTEKNQKATFSVTFIRDQ  716 (745)
Q Consensus       659 ~~~~~~~~tv~n~~~~~~ty~~~~~~-------~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~  716 (745)
                      +....++.+++|.+....+-++...+       -.+..+.-.--.+++.| ++++++.++++...
T Consensus        15 G~df~v~i~~~N~s~~~~~v~l~l~a~~v~YtG~~~~~~~~~~~~v~L~p-~~~~~v~~~v~~~~   78 (112)
T d1ex0a2          15 GKDFKLSITFRNNSHNRYTITAYLSANITFYTGVPKAEFKKETFDVTLEP-LSFKKEAVLIQAGE   78 (112)
T ss_dssp             TCCEEEEEEEEECSSSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECT-TEEEEEEEEECHHH
T ss_pred             CCCEEEEEEEEECCCCCEEEEEEEEEEEEEeCCcCchheEEeeEEEEECC-CCEEEEEEEEcHHH
Confidence            44788999999999877666655442       12344455555677777 99999999998854


No 24 
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=48.38  E-value=28  Score=26.94  Aligned_cols=16  Identities=25%  Similarity=0.231  Sum_probs=13.2

Q ss_pred             ccEEEEEEEEecCCCC
Q 042259          660 SPQTYNRTVTNVGQDN  675 (745)
Q Consensus       660 ~~~~~~~tv~n~~~~~  675 (745)
                      +..+++++|+|.|+.+
T Consensus        18 gr~~~~l~V~NtGDRp   33 (101)
T d1ejxb_          18 GRATCRVVVENHGDRP   33 (101)
T ss_dssp             TCCEEEEEEEECSSSC
T ss_pred             CCcEEEEEEEeCCCcc
Confidence            4568889999999976


No 25 
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=47.20  E-value=26  Score=29.59  Aligned_cols=65  Identities=14%  Similarity=0.076  Sum_probs=47.2

Q ss_pred             cEEEEEEEEecCCCCeeEEEEEECCCCeEEEEEcCeEEEeeCCceEEEEEEEEeccCC--CCCeEEEEEE
Q 042259          661 PQTYNRTVTNVGQDNSFYTHHIIVPEGVKIIVQPDKISFTEKNQKATFSVTFIRDQNS--NASSVQGYLS  728 (745)
Q Consensus       661 ~~~~~~tv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~--~~~~~~G~~~  728 (745)
                      .++-.++|+|.+.....|++....|.-+.  |.|..=.+.+ +++..+.|++......  .+.+..-.+.
T Consensus        36 ~~~~~l~l~N~s~~~vaFKiktt~p~~y~--V~P~~G~i~p-~~~~~I~v~~~~~~~~~~kdKFli~~~~  102 (152)
T d1wica_          36 EKKTLIVLTNVTKNIVAFKVRTTAPEKYR--VKPSNSSCDP-GASIDIIVSPHGGLTVSAQDRFLIMAAE  102 (152)
T ss_dssp             CCCEEEEEEBCSSSCEEEEEEESCTTTEE--EESSEEEECT-TCEEEEEEEECSSSCCCSSCCEEEEEEE
T ss_pred             eEEEEEEEECCCCCeEEEEEEcCCCccEE--EECCceEECC-CCEEEEEEEECCCCcccCCCcEEEEEEE
Confidence            35556899999999999999999998765  4688877877 9998888887554322  2345444443


No 26 
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}
Probab=43.98  E-value=55  Score=26.37  Aligned_cols=56  Identities=11%  Similarity=0.061  Sum_probs=37.3

Q ss_pred             cEEEEEEEEecCCCCeeEEEEE--EC-C--CCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCC
Q 042259          661 PQTYNRTVTNVGQDNSFYTHHI--IV-P--EGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSN  719 (745)
Q Consensus       661 ~~~~~~tv~n~~~~~~ty~~~~--~~-~--~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~  719 (745)
                      ....+++|+|.++.  .|.+++  .. +  ....+-++|..+++.+ |+++.+.|.-.....+.
T Consensus        20 ~~~~sv~l~N~~~~--p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p-~~~q~vRI~~~~~~lp~   80 (128)
T d2co7b1          20 TAGATLSVSNPQNY--PILVQSSVKAADKSSPAPFLVMPPLFRLEA-NQQSQLRIVRTGGDMPT   80 (128)
T ss_dssp             SSCEEEEEECCSSS--CEEEEEEEEETTSSSBCSEEEESSEEEECT-TCEEEEEEEECCCCCCS
T ss_pred             CCEEEEEEEeCCCC--cEEEEEEEEcCCCCccCCEEEeCceeEECC-CCceEEEEEecCCCCCC
Confidence            45666889997765  455443  21 1  2234668999999988 99998887765544443


No 27 
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=42.50  E-value=35  Score=27.33  Aligned_cols=16  Identities=19%  Similarity=0.258  Sum_probs=13.1

Q ss_pred             ccEEEEEEEEecCCCC
Q 042259          660 SPQTYNRTVTNVGQDN  675 (745)
Q Consensus       660 ~~~~~~~tv~n~~~~~  675 (745)
                      +..+.+++|+|.|+.+
T Consensus        20 gr~~~~l~V~NtGDRp   35 (122)
T d4ubpb_          20 GREKTTIRVSNTGDRP   35 (122)
T ss_dssp             TSCEEEEEEEECSSSC
T ss_pred             CCCEEEEEEEeCCCcc
Confidence            4568889999999976


No 28 
>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=41.83  E-value=21  Score=28.38  Aligned_cols=57  Identities=7%  Similarity=0.014  Sum_probs=38.3

Q ss_pred             CccEEEEEEEEecCCCCeeEEEEEEC-------CCCeEEEEEcCeEEEeeCCceEEEEEEEEecc
Q 042259          659 SSPQTYNRTVTNVGQDNSFYTHHIIV-------PEGVKIIVQPDKISFTEKNQKATFSVTFIRDQ  716 (745)
Q Consensus       659 ~~~~~~~~tv~n~~~~~~ty~~~~~~-------~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~  716 (745)
                      +....+..+++|.++...+-++...+       -.+..+.-..-.+++.| ++++++.+++...+
T Consensus        14 G~Df~v~i~~~N~s~~~~~v~l~l~a~~v~YtG~~~~~~~~~~~~v~L~p-~~~~~v~~~i~y~~   77 (112)
T d1g0da2          14 GTDFDVIVEVKNEGGRDAHAQLTMLAMAVTYNSLRRGECQRKTISVTVPA-HKAHKEVMRLHYDD   77 (112)
T ss_dssp             TCCEEEEEEEEECSSSCEEEEEEEEEEEECTTCBCCCCCCEEEEEEEECT-TEEEEEEEEECHHH
T ss_pred             CCCEEEEEEEEECCCCCEEEEEEEEEEEEEeCCcCccceeEeeEEEEECC-CCeEEEEEEEcHHH
Confidence            44688999999999877666554432       12222333334577777 99999999998854


No 29 
>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=41.11  E-value=31  Score=27.46  Aligned_cols=57  Identities=12%  Similarity=0.156  Sum_probs=38.7

Q ss_pred             CccEEEEEEEEecCCCCeeEEEEEECC----CC---eEEEEEcCeEEEeeCCceEEEEEEEEecc
Q 042259          659 SSPQTYNRTVTNVGQDNSFYTHHIIVP----EG---VKIIVQPDKISFTEKNQKATFSVTFIRDQ  716 (745)
Q Consensus       659 ~~~~~~~~tv~n~~~~~~ty~~~~~~~----~g---~~v~v~p~~~~~~~~g~~~~~~v~~~~~~  716 (745)
                      +....+..+++|.++...+-++...+-    .|   ..+.-..-.+++.+ ++++++.+++....
T Consensus        17 G~Df~v~l~~~N~s~~~~~v~l~l~a~av~YtG~~~~~~~~~~~~v~L~p-~~~~~v~~~v~y~~   80 (115)
T d1vjja2          17 GKEVNLVLLLKNLSRDTKTVTVNMTAWTIIYNGTLVHEVWKDSATMSLDP-EEEAEHPIKISYAQ   80 (115)
T ss_dssp             TSCEEEEEEEEECSSSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEECT-TCEEEEEEEECHHH
T ss_pred             CCCEEEEEEEEECCCCCEEEEEEEEEEEEEeCCcCchheEEeeEEEEECC-CCeEEEEEEECHHH
Confidence            346889999999998776655544321    22   33444445577777 99999999998854


No 30 
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Probab=40.25  E-value=6.8  Score=39.65  Aligned_cols=32  Identities=31%  Similarity=0.443  Sum_probs=27.1

Q ss_pred             CCCCceecccCCCCCCCCCCCccCceEeCCccEEeccCCC
Q 042259          476 KSAPEVAVFSSRGPNTASPGILKPDIIGPGVSILAAWPFS  515 (745)
Q Consensus       476 ~~~~~~a~fSS~GP~~~~~g~~KPDi~APG~~I~sa~~~~  515 (745)
                      .....++.||++|+..        ||.|||.+|+++.+..
T Consensus       181 ~~~~~~~~~s~~g~~v--------dv~apG~~i~st~~~g  212 (435)
T d1v6ca_         181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG  212 (435)
T ss_dssp             CTTCCBCTTSCCCSSE--------EEEEECSSEEEECSTT
T ss_pred             cCCCCcccccCCCCce--------EEeecccceeeeeecC
Confidence            3456788999999987        9999999999988763


No 31 
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}
Probab=37.48  E-value=76  Score=26.00  Aligned_cols=56  Identities=9%  Similarity=0.026  Sum_probs=36.5

Q ss_pred             cEEEEEEEEecCCCCeeEEEEE--ECC-----CCeEEEEEcCeEEEeeCCceEEEEEEEEeccCCC
Q 042259          661 PQTYNRTVTNVGQDNSFYTHHI--IVP-----EGVKIIVQPDKISFTEKNQKATFSVTFIRDQNSN  719 (745)
Q Consensus       661 ~~~~~~tv~n~~~~~~ty~~~~--~~~-----~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~  719 (745)
                      ....+++|+|.++.+  |.++.  ...     ....+-|+|..+++.+ |+++.+.|.-.....+.
T Consensus        21 ~~~~s~~v~N~~~~p--~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p-~~~~~lRI~~~~~~lP~   83 (141)
T d1p5va1          21 AAGVMVSVKNTQDYP--VLIQSRIYDENKEKESEDPFVVTPPLFRLDA-KQQNSLRIAQAGGVFPR   83 (141)
T ss_dssp             CSCEEEEEEECSSSC--EEEEEEECC---------CEEEESSEEEECT-TCEEEEEEEECSCCCCS
T ss_pred             CcEEEEEEEeCCCCC--EEEEEEEEcCCCCcCCCCCeEEcCCeEEECC-CCceEEEEEecCCCCCC
Confidence            456678999988654  55543  321     1122568999999988 99999888655444443


No 32 
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=35.61  E-value=56  Score=25.77  Aligned_cols=56  Identities=7%  Similarity=0.020  Sum_probs=37.6

Q ss_pred             ccEEEEEEEEecCCCCeeEEEEEEC----CCCeEE-EE---EcCeEEEeeCCceEEEEEEEEecc
Q 042259          660 SPQTYNRTVTNVGQDNSFYTHHIIV----PEGVKI-IV---QPDKISFTEKNQKATFSVTFIRDQ  716 (745)
Q Consensus       660 ~~~~~~~tv~n~~~~~~ty~~~~~~----~~g~~v-~v---~p~~~~~~~~g~~~~~~v~~~~~~  716 (745)
                      ....+..+++|.++...+-++...+    =.|+.. .+   ....+++.| ++++++.+++....
T Consensus        16 ~Df~v~~~~~N~s~~~~~v~l~l~a~~v~YtG~~~~~~~~k~~~~v~L~p-~~~~~v~~~v~y~~   79 (114)
T d2q3za2          16 SDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLTLEP-FSEKSVPLCILYEK   79 (114)
T ss_dssp             CCEEEEEEEEECSSSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECT-TEEEEEEEEECHHH
T ss_pred             CCEEEEEEEEeCCCCCEEEEEEEEEEEEEeCCcCcceeEEecceEEEECC-CCEEEEEEEEcHHH
Confidence            4688899999999876665554432    134322 22   223567777 99999999998854


No 33 
>d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=31.81  E-value=80  Score=25.25  Aligned_cols=58  Identities=14%  Similarity=0.250  Sum_probs=37.3

Q ss_pred             CccEEEEEEEEecCCC--CeeE-EEEEECCCCeEE---EEEcCeEEEeeCCceEEEEEEEEeccC
Q 042259          659 SSPQTYNRTVTNVGQD--NSFY-THHIIVPEGVKI---IVQPDKISFTEKNQKATFSVTFIRDQN  717 (745)
Q Consensus       659 ~~~~~~~~tv~n~~~~--~~ty-~~~~~~~~g~~v---~v~p~~~~~~~~g~~~~~~v~~~~~~~  717 (745)
                      ++..+++.+|+|.++.  ..-+ ++++....|-.|   .-+-+=|++=| ||+++++|++.....
T Consensus        37 dg~~~v~vtl~N~s~~~~pAff~rL~l~d~~g~~IlPv~~sDNY~sL~P-GE~~~v~i~~~~~~~  100 (122)
T d2vzsa2          37 DGTTTTTVTLKNTSGGRLPAFYVDSKVVDSAGKPVLPVEWNDNAVSLWP-GETTTLTAKYRTADL  100 (122)
T ss_dssp             TSEEEEEEEEEECCSSSCCEEEEEEEEECTTSCBCSSCEESSCSEEECT-TCEEEEEEEEEGGGG
T ss_pred             CCcEEEEEEEEcCCCCccEEEEEEEEeEcCCCCEecceEeeCCeEEEcC-CCeEEEEEEeccccc
Confidence            3467889999999874  2333 455554444322   12233456667 999999999997653


No 34 
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}
Probab=31.07  E-value=97  Score=24.59  Aligned_cols=52  Identities=10%  Similarity=0.097  Sum_probs=36.0

Q ss_pred             cEEEEEEEEecCCCCeeEEEEE--ECCCC-----eEEEEEcCeEEEeeCCceEEEEEEEEe
Q 042259          661 PQTYNRTVTNVGQDNSFYTHHI--IVPEG-----VKIIVQPDKISFTEKNQKATFSVTFIR  714 (745)
Q Consensus       661 ~~~~~~tv~n~~~~~~ty~~~~--~~~~g-----~~v~v~p~~~~~~~~g~~~~~~v~~~~  714 (745)
                      ....+++|+|.|+. ..|-++.  ....+     ..+-++|..+.+.+ |+++.+.|....
T Consensus        15 ~~~~~i~v~N~~~~-~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p-~~~~~vRI~~~~   73 (124)
T d2j2za1          15 EKSMTLDISNDNKQ-LPYLAQAWIENENQEKIITGPVIATPPVQRLEP-GAKSMVRLSTTP   73 (124)
T ss_dssp             SSEEEEEEEECCSS-SCEEEEEEEECTTSCEESSSSEEEECSEEEECT-TCEEEEEEEECG
T ss_pred             CCEEEEEEEeCCCC-ccEEEEEEEecCCCCccccCCeEECCCeEEECC-CCcceEEEEEcC
Confidence            45677999997753 2465543  32211     22678999999988 999998888774


No 35 
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}
Probab=30.04  E-value=45  Score=27.04  Aligned_cols=16  Identities=25%  Similarity=0.351  Sum_probs=12.3

Q ss_pred             ccEEEEEEEEecCCCC
Q 042259          660 SPQTYNRTVTNVGQDN  675 (745)
Q Consensus       660 ~~~~~~~tv~n~~~~~  675 (745)
                      +..+.+++|+|.|+.+
T Consensus        18 gr~~~~l~V~NtGDRp   33 (133)
T d1e9ya1          18 GKKAVSVKVKNVGDRP   33 (133)
T ss_dssp             TCCCCEEEEEECSSSC
T ss_pred             CCcEEEEEEEeCCCcc
Confidence            3456778999999875


No 36 
>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]}
Probab=29.33  E-value=1.1e+02  Score=23.82  Aligned_cols=30  Identities=27%  Similarity=0.247  Sum_probs=24.1

Q ss_pred             cEEEEEEEEecCCCCe-eEEEEEECCCCeEE
Q 042259          661 PQTYNRTVTNVGQDNS-FYTHHIIVPEGVKI  690 (745)
Q Consensus       661 ~~~~~~tv~n~~~~~~-ty~~~~~~~~g~~v  690 (745)
                      -.+.+++|+|.+.... -|++++..|.+.+|
T Consensus        20 Gf~~~vtVtN~~~~~~~gW~v~~~~p~g~~i   50 (110)
T d1exha_          20 GFTANVTVKNTSSAPVDGWTLTFSFPSGQQV   50 (110)
T ss_dssp             CEEEEEEEEECSSSCEESEEEEEECSSCCEE
T ss_pred             CcEEEEEEEeCCCCcccCcEEEEECCCCCEE
Confidence            3566799999998764 59999999987766


No 37 
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.36  E-value=30  Score=24.12  Aligned_cols=33  Identities=15%  Similarity=0.241  Sum_probs=29.8

Q ss_pred             chhHHHHHHHHHHHhhCCCCCHHHHHHHHhccc
Q 042259          534 MSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTA  566 (745)
Q Consensus       534 mAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA  566 (745)
                      .|+|-|-.-.+-+++.+|.+-.-|||+.|..-.
T Consensus         9 vaTP~V~~kI~~yK~enP~iFaWEIRd~Li~eg   41 (61)
T d1k78a2           9 VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAER   41 (61)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHhcCCcccHHHHHHHHHHcC
Confidence            479999999999999999999999999998743


No 38 
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}
Probab=23.09  E-value=82  Score=24.97  Aligned_cols=52  Identities=17%  Similarity=0.174  Sum_probs=34.8

Q ss_pred             cEEEEEEEEecCCCCeeEEEEE--EC---CCCeEEEEEcCeEEEeeCCceEEEEEEEEe
Q 042259          661 PQTYNRTVTNVGQDNSFYTHHI--IV---PEGVKIIVQPDKISFTEKNQKATFSVTFIR  714 (745)
Q Consensus       661 ~~~~~~tv~n~~~~~~ty~~~~--~~---~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~  714 (745)
                      .....++|+|.++. ..|-++.  ..   .....+-++|..+.+.+ ++++.+.|....
T Consensus        15 ~~~~~~~i~N~~~~-~~~lvq~wv~~~d~~~~~~fivtPPl~rl~p-~~~q~vRI~~~~   71 (121)
T d3bwuc1          15 QKQEQLAVTNNDEN-STYLIQSWVENADGVKDGRFIVTPPLFAMKG-KKENTLRILDAT   71 (121)
T ss_dssp             CSEEEEEEEECCTT-CEEEEEEEEEETTSCCCSSEEEESSEEEEES-SEEEEEEEEECS
T ss_pred             CceEEEEEEECCCC-ccEEEEEEEEcCCCCcCCCeeECCCcEEeCC-CCeeEEEEEecC
Confidence            45667888887753 2455443  21   12234678999999988 999998886543


No 39 
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.11  E-value=45  Score=23.48  Aligned_cols=33  Identities=15%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             chhHHHHHHHHHHHhhCCCCCHHHHHHHHhccc
Q 042259          534 MSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTA  566 (745)
Q Consensus       534 mAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA  566 (745)
                      .|+|.|-.-++-+++.+|.+=.-|||+.|..-.
T Consensus         7 vaTP~V~~kI~~yK~enP~iFaWEIRd~Li~eg   39 (65)
T d6paxa2           7 VATPEVVSKIAQYKQECPSIFAWEIRDRLLSEG   39 (65)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHhCCccchHHHHHHHHHcC
Confidence            479999999999999999999999999998753


No 40 
>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
Probab=20.67  E-value=33  Score=28.57  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=27.8

Q ss_pred             eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 042259          527 TMISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSA  561 (745)
Q Consensus       527 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~  561 (745)
                      ..+.|.| =|+.|.|++||+...+-..+|++|.++
T Consensus        65 ~~f~~dS-da~IvkGl~ail~~~~~g~t~~eI~~~   98 (144)
T d1mzga_          65 IELQGDS-DAAIVKGLIAVVFILYDQMTPQDIVNF   98 (144)
T ss_dssp             EEEEEEE-SSHHHHHHHHHHHHHTTTCCHHHHHHC
T ss_pred             eEEEeeC-chHHHHHHHHHHHHHHCCCCHHHHHhc
Confidence            4455666 358999999999999999999998764


No 41 
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.43  E-value=31  Score=23.97  Aligned_cols=26  Identities=12%  Similarity=0.213  Sum_probs=21.5

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHhcccc
Q 042259          542 IAALLKSAHPDWSPAAIKSAIMTTAD  567 (745)
Q Consensus       542 ~aALl~q~~p~~s~~~ik~~L~~TA~  567 (745)
                      ...-|++.||++...-|+..|...--
T Consensus        12 ~i~~LkeMFP~~D~~vI~~VL~a~~G   37 (59)
T d1wgla_          12 DLKAIQDMFPNMDQEVIRSVLEAQRG   37 (59)
T ss_dssp             HHHHHHHHCSSSCHHHHHHHHTTTTT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHcCC
Confidence            35568899999999999999987543


Done!