BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042260
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 143 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 101
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 102 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 227
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 228 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 287 VVISTAC-HPTENIIASAALENDKTIKLW 314
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 10 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 143 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 101
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 102 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 227
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 228 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 287 VVISTAC-HPTENIIASAALENDKTIKLW 314
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 10 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 140 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 98
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 99 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 224
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 225 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Query: 120 AAVNTVVLHPNQTELIS 136
++T HP + + S
Sbjct: 284 VVISTAC-HPTENIIAS 299
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
HT V +V F +G W+ S S D +KIW + + ++ V + L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 136 SGDQNGNIRVWDLTANSC 153
S + +++WD+++ C
Sbjct: 85 SASDDKTLKIWDVSSGKC 102
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 140 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 98
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 99 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 224
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 225 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Query: 120 AAVNTVVLHPNQTELIS 136
++T HP + + S
Sbjct: 284 VVISTAC-HPTENIIAS 299
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
HT V +V F +G W+ S S D +KIW + + ++ V + L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 136 SGDQNGNIRVWDLTANSC 153
S + +++WD+++ C
Sbjct: 85 SASDDKTLKIWDVSSGKC 102
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 133 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 222
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 91
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 92 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 151
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 217
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 218 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 276
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 277 VVISTAC-HPTENIIASAALENDKTIKLW 304
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
HT V +V F +G W+ S S D +KIW + + ++ V + L+
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 136 SGDQNGNIRVWDLTANSC 153
S + +++WD+++ C
Sbjct: 78 SASDDKTLKIWDVSSGKC 95
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 140 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA +S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 98
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 99 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 224
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 225 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 283
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 284 VVISTAC-HPTENIIASAALENDKTIKLW 311
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 38 VNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSG 96
V+ ++ +PN +LAA+ + I+++ + +S H + V + D N + S
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVSA 86
Query: 97 SEDGTVKIWDLRAPVCQMEYESRAA-VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
S+D T+KIWD+ + C + + V +P ++SG + ++R+WD+ C
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
HT V +V F +G W+ + S D +KIW + + ++ V + L+
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 136 SGDQNGNIRVWDLTANSC 153
S + +++WD+++ C
Sbjct: 85 SASDDKTLKIWDVSSGKC 102
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 142 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 231
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 100
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 101 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 160
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 226
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 227 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 285
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 286 VVISTAC-HPTENIIASAALENDKTIKLW 313
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 9 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 68
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 104
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 137 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 95
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 96 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 221
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 222 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 281 VVISTAC-HPTENIIASAALENDKTIKLW 308
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 4 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 136 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 225
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 94
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 95 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 154
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 220
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 221 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 279
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 280 VVISTAC-HPTENIIASAALENDKTIKLW 307
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI 135
HT V +V F +G W+ S S D +KIW + + ++ V + L+
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 136 SGDQNGNIRVWDLTANSC 153
S + +++WD+++ C
Sbjct: 81 SASDDKTLKIWDVSSGKC 98
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 154 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 243
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 112
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 113 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 172
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQC 200
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 180 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 238
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 239 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 297
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 298 VVISTAC-HPTENIIASAALENDKTIKLW 325
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 61 FDVNSSSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ 113
F S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 16 FQGTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 75
Query: 114 MEYES-RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 116
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 137 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 95
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 96 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 221
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 222 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 280
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 281 VVISTAC-HPTENIIASAALENDKTIKLW 308
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 4 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 143 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 101
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 102 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 227
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 228 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 286
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 287 VVISTAC-HPTENIIASAALENDKTIKLW 314
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 10 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 138 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 227
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 96
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 97 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 156
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 222
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 223 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 281
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 282 VVISTAC-HPTENIIASAALENDKTIKLW 309
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 5 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 64
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 100
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 161 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 250
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 119
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 120 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 179
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQC 207
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 245
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 246 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 304
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 305 VVISTAC-HPTENIIASAALENDKTIKLW 332
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 28 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 87
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 123
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 140 KTG--MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + ++++WD + C
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKC 229
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 98
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ +C + + V+ V
Sbjct: 99 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY- 224
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 225 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 284 VVISTAC-HPTENIIASAALENDKTIKLW 311
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 7 SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 159 KTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 117
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ C + + V+ V
Sbjct: 118 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 177
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQC 205
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 243
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 244 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 303 VVISTAC-HPTENIIASAALENDKTIKLW 330
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 26 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 85
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 121
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 5/152 (3%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV 63
S +L +AS DKT+K W+ SG+C +T++ + V P + + + + +R++DV
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAA 121
+ + + H++ V AV F DG+ + S S DG +IWD + C + +
Sbjct: 140 KTG--MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
V+ V PN +++ + +++WD + C
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 4/148 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
LA++S DK IK W A G+ +TI ++ + + + + L +A + ++++DV S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--S 98
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTV 125
S + + + H+N V F N + SGS D +V+IWD++ +C + + V+ V
Sbjct: 99 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
Query: 126 VLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + + ++S +G R+WD + C
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNPHIRLFDVN 64
++ ++SYD + W+ SG+C +T+ D+ V+ ++ +PN K+ LAA + ++L+D
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY- 224
Query: 65 SSSPQPVMSYDQHTNN---VMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESR 119
S + + +Y H N + A G W+ SGSED V IW+L+ V +++ +
Sbjct: 225 -SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Query: 120 AAVNTVVLHPNQTELISG--DQNGNIRVW 146
++T HP + + S + + I++W
Sbjct: 284 VVISTAC-HPTENIIASAALENDKTIKLW 311
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 66 SSPQPV-------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
S P PV + HT V +V F +G W+ S S D +KIW +
Sbjct: 7 SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ ++ V + L+S + +++WD+++ C
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 25/186 (13%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNS 65
+LA+ S D TIK W+ + C RT+ D V+ + I PN H ++A+ + I++++V +
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNT 124
V ++ H V V DG + S S D TV++W + C+ E E R V
Sbjct: 224 G--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281
Query: 125 VVLHPNQTE--------------------LISGDQNGNIRVWDLTANSCSCEL-GLQYGL 163
+ P + L+SG ++ I++WD++ C L G +
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341
Query: 164 RTFLFY 169
R LF+
Sbjct: 342 RGVLFH 347
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNS 65
++ +AS D TIK W+ ++G RT++ V + + LA+ + + I+L+D
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNT 124
+ + + H +NV +V +G+ + S S D T+K+W+++ C + R V
Sbjct: 182 F--ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239
Query: 125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
V + + T + S + +RVW + C EL
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
+ +AS DKTIK WE ++G C +T V + + +A+ N +R++ V +
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 67 SPQPVMSYDQHTNNVM-------------AVGFQCD-----GNWMYSGSEDGTVKIWDLR 108
+ + +H + A G + G ++ SGS D T+K+WD+
Sbjct: 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 109 APVCQMEYESRAA-VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFL 167
+C M V V+ H ++S + +RVWD C L T L
Sbjct: 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386
Query: 168 FYHQ 171
+H+
Sbjct: 387 DFHK 390
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEI-TPNKHYLAAAGNPHIRL 60
+P L + S DKTIK W+ +G C T+ D+ V + + K L+ A + +R+
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 61 FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR 108
+D + + + + + H + V ++ F ++ +GS D TVK+W+ R
Sbjct: 365 WDYKNK--RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 24/167 (14%)
Query: 3 QPSVILATASYDKTIKFWEAKSGRC---------------------YRTIQYPDSQVNRL 41
Q ++A+ S D+T++ W + C Y +I +
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 303
Query: 42 EITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT 101
P L+ + + I+++DV S+ +M+ H N V V F G ++ S ++D T
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 102 VKIWDLRAPVCQMEYESRAA-VNTVVLHPNQTELISGDQNGNIRVWD 147
+++WD + C + V ++ H +++G + ++VW+
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 21/113 (18%)
Query: 53 AGNPHIRLFDVNSSSPQPVMSY--DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP 110
+G P + D P+P Y H + V V F + M S SED T+K+WD
Sbjct: 81 SGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD---- 136
Query: 111 VCQMEYESRAAVNTVVLHPNQTELISGDQNGN----------IRVWDLTANSC 153
YE+ T+ H + + IS D +G I++WD C
Sbjct: 137 -----YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 62.4 bits (150), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
+A+AS DKT+K W ++G+ +T+ S V + +P+ +A+A + ++L++ N
Sbjct: 154 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG- 211
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
Q + + H+++V V F DG + S S+D TVK+W+ + Q ++VN V
Sbjct: 212 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVA 269
Query: 127 LHPNQTELISGDQNGNIRVWD 147
P+ + S + +++W+
Sbjct: 270 FRPDGQTIASASDDKTVKLWN 290
Score = 60.1 bits (144), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
+A+AS DKT+K W ++G+ +T+ S V + +P+ +A+A + ++L++ N
Sbjct: 400 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG- 457
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
Q + + H+++V V F DG + S S+D TVK+W+ + Q ++V V
Sbjct: 458 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA 515
Query: 127 LHPNQTELISGDQNGNIRVWD 147
P+ + S + +++W+
Sbjct: 516 FSPDGQTIASASDDKTVKLWN 536
Score = 60.1 bits (144), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
+A+AS DKT+K W ++G+ +T+ S V + +P+ +A+A + ++L++ N
Sbjct: 277 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG- 334
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
Q + + H+++V V F DG + S S+D TVK+W+ + Q ++V V
Sbjct: 335 --QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA 392
Query: 127 LHPNQTELISGDQNGNIRVWD 147
P+ + S + +++W+
Sbjct: 393 FSPDGQTIASASDDKTVKLWN 413
Score = 59.7 bits (143), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
+A+AS DKT+K W ++G+ +T+ S V + +P+ +A+A + ++L++ N
Sbjct: 195 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG- 252
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
Q + + H+++V V F+ DG + S S+D TVK+W+ + Q ++V V
Sbjct: 253 --QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 310
Query: 127 LHPNQTELISGDQNGNIRVWD 147
P+ + S + +++W+
Sbjct: 311 FSPDGQTIASASDDKTVKLWN 331
Score = 59.7 bits (143), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
+A+AS DKT+K W ++G+ +T+ S V + +P+ +A+A + ++L++ N
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG- 498
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
Q + + H+++V V F DG + S S+D TVK+W+ + Q ++V V
Sbjct: 499 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 556
Query: 127 LHPNQTELISGDQNGNIRVWD 147
P+ + S + +++W+
Sbjct: 557 FSPDGQTIASASSDKTVKLWN 577
Score = 59.7 bits (143), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
+A+AS DKT+K W ++G+ +T+ S V + +P+ +A+A + ++L++ N
Sbjct: 72 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG- 129
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
Q + + H+++V V F DG + S S+D TVK+W+ + Q ++V V
Sbjct: 130 --QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 187
Query: 127 LHPNQTELISGDQNGNIRVWD 147
P+ + S + +++W+
Sbjct: 188 FSPDGQTIASASDDKTVKLWN 208
Score = 58.5 bits (140), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
+A+AS DKT+K W ++G+ +T+ S V + +P+ +A+A + ++L++ N
Sbjct: 31 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG- 88
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
Q + + H+++V V F DG + S S+D TVK+W+ + Q ++V V
Sbjct: 89 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 146
Query: 127 LHPNQTELISGDQNGNIRVWD 147
P+ + S + +++W+
Sbjct: 147 FSPDGQTIASASDDKTVKLWN 167
Score = 58.2 bits (139), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSS 66
+A+AS DKT+K W ++G+ +T+ S V + +P+ +A+A + ++L++ N
Sbjct: 318 IASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG- 375
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
Q + + H+++V V F DG + S S+D TVK+W+ + Q ++V V
Sbjct: 376 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 433
Query: 127 LHPNQTELISGDQNGNIRVWD 147
P+ + S + +++W+
Sbjct: 434 FSPDDQTIASASDDKTVKLWN 454
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 36 SQVNRLEITPNKHYLAAAGNPH-IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY 94
S V + +P+ +A+A + ++L++ N Q + + H+++V V F DG +
Sbjct: 17 SSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 95 SGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147
S S+D TVK+W+ + Q ++V V P+ + S + +++W+
Sbjct: 74 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 40.4 bits (93), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL 134
+ H+++V V F DG + S S+D TVK+W+ + Q ++V V P+ +
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI 72
Query: 135 ISGDQNGNIRVWD 147
S + +++W+
Sbjct: 73 ASASDDKTVKLWN 85
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 72/143 (50%), Gaps = 7/143 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS 67
+ + +YD +K W+ ++ C T+Q ++V L+ H ++ + + IR++DV + +
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGN 310
Query: 68 PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEYESRAAVNTV 125
++ Q + G + N + SG+ D TVKIWD++ C ++ ++
Sbjct: 311 CIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 126 VLHPNQTELISGDQNGNIRVWDL 148
L N+ +I+ +G +++WDL
Sbjct: 367 CLQFNKNFVITSSDDGTVKLWDL 389
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
I+ + S D+T+K W A++G C T+ Y + R K ++ + + +R++D+ +
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 229
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
V+ H V V Q DG + SG+ D VK+WD C +
Sbjct: 230 QCLHVLM--GHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYS 284
Query: 127 LHPNQTELISGDQNGNIRVWDLTANSC 153
L + ++SG + +IRVWD+ +C
Sbjct: 285 LQFDGIHVVSGSLDTSIRVWDVETGNC 311
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS 67
+ + S D T+K W A +G+C RT+ V ++ N + +G+ L N+ +
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAET 188
Query: 68 PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVL 127
+ + + HT+ V + + SGS D T+++WD+ C A V
Sbjct: 189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246
Query: 128 HPNQTELISGDQNGNIRVWDLTANSC 153
+ + ++SG + ++VWD +C
Sbjct: 247 YDGR-RVVSGAYDFMVKVWDPETETC 271
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 42/103 (40%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
IL + + D T+K W+ K+G+C +T+Q PNKH A
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQ-----------GPNKHQSAVT------------- 366
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109
Q + N++ + S+DGTVK+WDL+
Sbjct: 367 ------------------CLQFNKNFVITSSDDGTVKLWDLKT 391
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 43/126 (34%)
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-------------- 112
SP+ + +D H + Q GN + SGS+D T+K+W C
Sbjct: 110 SPKVLKGHDDH----VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 165
Query: 113 QME-----------------YESRAAVNTV--------VLHPNQTELISGDQNGNIRVWD 147
QM E+ ++T+ +H ++ ++SG ++ +RVWD
Sbjct: 166 QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 225
Query: 148 LTANSC 153
+ C
Sbjct: 226 IETGQC 231
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN-PHIRLFDVNS 65
I A++S D I+ W+ ++G+ ++I L +P+ YLA + + +F V S
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNT 124
+ S D ++++ + DG ++ SG+ DG + I+D+ E A + +
Sbjct: 154 GKKE--YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS 211
Query: 125 VVLHPNQTELISGDQNGNIRVWDL 148
+ P+ L++ +G I+++D+
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDV 235
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSS 66
LA+ + D I ++ +G+ T++ + L +P+ L A+ + +I+++DV +
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEYESRAAVNTV 125
+ +S H + V+ V F D S S D +VK+WD+ C ++ + V V
Sbjct: 239 NLAGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296
Query: 126 VLHPNQTELISGDQNGNIRVWD 147
+ N ++++S + I ++D
Sbjct: 297 KYNGNGSKIVSVGDDQEIHIYD 318
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEIT-PNKHYLAAAG--NPHIRLFDVN 64
+AT S DK +K W++ +G+ T QVN T + H L A G + ++L+D+N
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 65 SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109
+ M HTN+V F D + S S DGT+++WD+R+
Sbjct: 732 QKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSS 66
+A+ DKT++ ++A++G I+ + +V + + Y+A + + ++++D S+
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD--SA 687
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGN--WMYSGSEDGTVKIWDLRAPVCQ-MEYESRAAVN 123
+ + V +YD+H+ V F N + +GS D +K+WDL C+ + +VN
Sbjct: 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747
Query: 124 TVVLHPNQTELISGDQNGNIRVWDL 148
P+ L S +G +R+WD+
Sbjct: 748 HCRFSPDDELLASCSADGTLRLWDV 772
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 19/160 (11%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA---AAGNPHIRLFDVN 64
L + S+D T+K W +GR R V I+ + + A I FD+
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 65 SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR--------APVCQMEY 116
S P+ H V F DG + +G ++G ++IW++ AP+ E
Sbjct: 1118 S----PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG 1173
Query: 117 ESRAA--VNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154
+ V V P+ L+S G ++ W++ S
Sbjct: 1174 TATHGGWVTDVCFSPDSKTLVSA--GGYLKWWNVATGDSS 1211
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVN 64
++LAT S D +K W+ C T+ + VN +P+ LA+ + + +RL+DV
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 65 SSSPQ 69
S++ +
Sbjct: 774 SANER 778
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-V 122
+ + + ++ H + V+ F D +++ + S D VKIWD Y+ + V
Sbjct: 643 KAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV 702
Query: 123 NTVVL--HPNQTELISGDQNGNIRVWDLTANSC 153
N N L +G + +++WDL C
Sbjct: 703 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 28 YRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86
+ TIQY D +P H A + + + L++++S V H + V V F
Sbjct: 840 HSTIQYCD-------FSPYDHLAVIALSQYCVELWNIDSR--LKVADCRGHLSWVHGVMF 890
Query: 87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW 146
DG+ + S+D T+++W+ + VC+ VV N+T +++ D NIR
Sbjct: 891 SPDGSSFLTASDDQTIRVWETK-KVCKNSAIVLKQEIDVVFQENETMVLAVD---NIRGL 946
Query: 147 DLTA 150
L A
Sbjct: 947 QLIA 950
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 17 IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYD 75
I+ + +G+ + P++QV+ ++P+ Y+A + I++ ++ ++ + S
Sbjct: 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN--RVFSSGV 1000
Query: 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI 135
H V + F DG + S SED +++W+ + + V L + + L+
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD-SRLL 1059
Query: 136 SGDQNGNIRVWDL 148
S +G ++VW++
Sbjct: 1060 SWSFDGTVKVWNV 1072
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEIT-PNKHYLAAAG--NPHIRLFDVN 64
+AT S DK +K W++ +G+ T QVN T + H L A G + ++L+D+N
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 65 SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109
+ M HTN+V F D + S S DGT+++WD+R+
Sbjct: 739 QKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSS 66
+A+ DKT++ ++A++G I+ + +V + + Y+A + + ++++D S+
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD--SA 694
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGN--WMYSGSEDGTVKIWDLRAPVCQ-MEYESRAAVN 123
+ + V +YD+H+ V F N + +GS D +K+WDL C+ + +VN
Sbjct: 695 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 754
Query: 124 TVVLHPNQTELISGDQNGNIRVWDL 148
P+ L S +G +R+WD+
Sbjct: 755 HCRFSPDDELLASCSADGTLRLWDV 779
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 19/160 (11%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA---AAGNPHIRLFDVN 64
L + S+D T+K W +GR R V I+ + + A I FD+
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 65 SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR--------APVCQMEY 116
S P+ H V F DG + +G ++G ++IW++ AP+ E
Sbjct: 1125 S----PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG 1180
Query: 117 ESRAA--VNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154
+ V V P+ L+S G ++ W++ S
Sbjct: 1181 TATHGGWVTDVCFSPDSKTLVSA--GGYLKWWNVATGDSS 1218
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVN 64
++LAT S D +K W+ C T+ + VN +P+ LA+ + + +RL+DV
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 65 SSSPQ 69
S++ +
Sbjct: 781 SANER 785
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-V 122
+ + + ++ H + V+ F D +++ + S D VKIWD Y+ + V
Sbjct: 650 KAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV 709
Query: 123 NTVVL--HPNQTELISGDQNGNIRVWDLTANSC 153
N N L +G + +++WDL C
Sbjct: 710 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 742
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 28 YRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86
+ TIQY D +P H A + + + L++++S V H + V V F
Sbjct: 847 HSTIQYCD-------FSPYDHLAVIALSQYCVELWNIDSR--LKVADCRGHLSWVHGVMF 897
Query: 87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW 146
DG+ + S+D T+++W+ + VC+ VV N+T +++ D NIR
Sbjct: 898 SPDGSSFLTASDDQTIRVWETK-KVCKNSAIVLKQEIDVVFQENETMVLAVD---NIRGL 953
Query: 147 DLTA 150
L A
Sbjct: 954 QLIA 957
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 17 IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYD 75
I+ + +G+ + P++QV+ ++P+ Y+A + I++ ++ ++ + S
Sbjct: 950 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN--RVFSSGV 1007
Query: 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI 135
H V + F DG + S SED +++W+ + + V L + + L+
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD-SRLL 1066
Query: 136 SGDQNGNIRVWDL 148
S +G ++VW++
Sbjct: 1067 SWSFDGTVKVWNV 1079
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 43 ITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT 101
+P+ +LA A + IR++D+ + + VM H ++ ++ + G+ + SGS D T
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 102 VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWD 147
V+IWDLR C + V TV + P + I +G + +RVWD
Sbjct: 189 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 21/160 (13%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFDVNS 65
L + S D+T++ W+ ++G+C T+ D V + ++P AAG + +R++D +
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 66 SSPQPVMSYDQ-----HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR------------ 108
+ + H ++V +V F DG + SGS D +VK+W+L+
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 109 APVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147
+ C++ Y + V +V N ++SG ++ + WD
Sbjct: 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 41 LEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN----------------VMAV 84
++ + + YLA N +++ V+ S +S D N + +V
Sbjct: 70 VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 129
Query: 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNTVVLHPNQTELISGDQNGNI 143
F DG ++ +G+ED ++IWD+ M + + ++ P+ +L+SG + +
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 144 RVWDLTANSCSCELGLQYGLRT 165
R+WDL CS L ++ G+ T
Sbjct: 190 RIWDLRTGQCSLTLSIEDGVTT 211
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNS 65
LAT + D+ I+ W+ ++ + +Q + + L+ P+ L + +G+ +R++D+ +
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES------- 118
+S + V DG ++ +GS D V++WD +S
Sbjct: 197 GQCSLTLSIEDGVTTVAVS--PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254
Query: 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDL----------TANSCSCEL 157
+ +V +VV + ++SG + ++++W+L T NS +CE+
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/164 (17%), Positives = 71/164 (43%), Gaps = 25/164 (15%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQ--------YPDSQVNRLEITPNKHYLAAAGNPHIR 59
+A S D+ ++ W++++G + + DS + + + ++ + + ++
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 60 LFDV-----NSSSPQP-----VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109
L+++ S S P ++Y H + V++V + ++ SGS+D V WD ++
Sbjct: 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341
Query: 110 --PVCQMEYESRAAVNTVV-----LHPNQTELISGDQNGNIRVW 146
P+ ++ + ++ V L P +G + R+W
Sbjct: 342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA---GNPHIRLFDV 63
+AT S DK +K W + +G T QVN T + H+L A + ++L+D+
Sbjct: 677 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD 106
N + M HTN+V F D + S S DGT+K+WD
Sbjct: 737 NQKECRNTMF--GHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSS 66
+A+ DKT++ ++A++G I+ + +V + + ++A + ++++ NS
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW--NSM 693
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGN--WMYSGSEDGTVKIWDLRAPVCQ-MEYESRAAVN 123
+ + V +YD+H+ V F + + +GS D +K+WDL C+ + +VN
Sbjct: 694 TGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVN 753
Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTA 150
P+ L S +G +++WD T+
Sbjct: 754 HCRFSPDDKLLASCSADGTLKLWDATS 780
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS 67
L ++S D I+ W + +C + ++ V + N L+ + + ++++++ + +
Sbjct: 1024 LISSSDDAEIQVWNWQLDKCIFLRGHQET-VKDFRLLKNSRLLSWSFDGTVKVWNIITGN 1082
Query: 68 PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW--DLRAPVCQMEYESRAAVNTV 125
+ + H V++ D S S D T KIW DL P+ ++ + V
Sbjct: 1083 KEK--DFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHN-GCVRCS 1139
Query: 126 VLHPNQTELISGDQNGNIRVWDLT 149
+ T L +GD NG IR+W+++
Sbjct: 1140 AFSVDSTLLATGDDNGEIRIWNVS 1163
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 17 IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYD 75
I+ + +GR + ++QV+ ++P+ Y+A N I + ++ ++ + S
Sbjct: 949 IRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNN--RIFQSRF 1006
Query: 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI 135
QH V + F D + S S+D +++W+ + C + V L N + L+
Sbjct: 1007 QHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKN-SRLL 1065
Query: 136 SGDQNGNIRVWDL 148
S +G ++VW++
Sbjct: 1066 SWSFDGTVKVWNI 1078
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 50/164 (30%)
Query: 28 YRTIQYPDSQVNRLEITPNKHYLAAAGNPH-IRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86
+ TIQY D +P H A + + + L++ +S S V H + V V F
Sbjct: 846 HSTIQYCD-------FSPQNHLAVVALSQYCVELWNTDSRSK--VADCRGHLSWVHGVMF 896
Query: 87 QCDGNWMYSGSEDGTVKIWDLRAPVC---------------------------------- 112
DG+ + S+D T+++W+ + VC
Sbjct: 897 SPDGSSFLTSSDDQTIRLWETK-KVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLI 955
Query: 113 -----QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151
Q++Y + A V+ L P+ + GD+NG I + +L N
Sbjct: 956 NGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNN 999
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVN 64
++LAT S D +K W+ C T+ + VN +P+ LA+ + + ++L+D
Sbjct: 720 LLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Query: 65 SSSPQPVMSYDQHTNNV 81
S++ + ++ Q N+
Sbjct: 780 SANERKSINVKQFFLNL 796
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD-VNSSSP 68
T+S D+TI+ WE K C + +V+ + ++ + HIR +N +
Sbjct: 905 TSSDDQTIRLWETKK-VCKNSAVMLKQEVD---VVFQENEVMVLAVDHIRRLQLINGRTG 960
Query: 69 Q-PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVV 126
Q ++ Q + ++ Q ++ G E+G ++I +L + Q ++ + V +
Sbjct: 961 QIDYLTEAQVSCCCLSPHLQ----YIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQ 1016
Query: 127 LHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTF 166
++ LIS + I+VW+ + C G Q ++ F
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDF 1056
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 55.1 bits (131), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 11/152 (7%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTI----QYPDSQVNRLEITPNK---HYLAAAGNPHIRL 60
+ +AS D+TIK W G C TI + V+ + +PN ++A+ + +++
Sbjct: 487 IVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 61 FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
+++++ + ++ HT V V DG+ SG +DG V +WDL E+ +
Sbjct: 546 WNLSNCKLRSTLA--GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603
Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152
++ + PN+ L + ++G I++WDL + S
Sbjct: 604 VIHALCFSPNRYWLCAATEHG-IKIWDLESKS 634
Score = 47.0 bits (110), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 7 ILATASYDKTIKFWE-AKSGRCY----RTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRL 60
I+ +AS DK+I W+ K + Y R + V + ++ + + L+ + + +RL
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 61 FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW----DLRAPVCQMEY 116
+D+ ++ + HT +V++V F D + S S D T+K+W + + + +
Sbjct: 457 WDL--AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE 514
Query: 117 ESRAAVNTVVLHPN--QTELISGDQNGNIRVWDLT 149
R V+ V PN Q ++S + ++VW+L+
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Score = 40.0 bits (92), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
+ A+ D + W+ G+ +++ +S ++ L +PN+++L AA I+++D+ S
Sbjct: 575 LCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESK 633
Query: 67 SPQPVMSYD-----QHTNN------------VMAVGFQCDGNWMYSGSEDGTVKIWDL 107
S + D + +N ++ + DG+ ++SG DG +++W +
Sbjct: 634 SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 32.0 bits (71), Expect = 0.17, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 77 HTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAP-----VCQMEYESRAA-VNTVVLHP 129
HT+ V A+ D + + S S D ++ +W L V Q + V VVL
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 130 NQTELISGDQNGNIRVWDLTA 150
+ +SG +G +R+WDL A
Sbjct: 441 DGQFALSGSWDGELRLWDLAA 461
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 7 ILATASYDKTIKFWEAKSGR---CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDV 63
++ T S D++I W+ S R + + VN ++ +K+ ++A+G+ I+++
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVW-- 281
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN 123
N+S+ + V + + H + + ++ + SGS D T+++WD+ C E +
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 339
Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTA 150
+ N+ ++SG +G I+VWDL A
Sbjct: 340 RCIRFDNK-RIVSGAYDGKIKVWDLVA 365
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS 67
+ +AS D+TIK W + RT+ + L+ ++ ++ + + IRL+D+ +
Sbjct: 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGA 327
Query: 68 PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVL 127
V+ + H V + F D + SG+ DG +K+WDL A + + T+V
Sbjct: 328 CLRVL--EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 383
Query: 128 HP--------NQTELISGDQNGNIRVWDL 148
H ++ +++S + I +WD
Sbjct: 384 HSGRVFRLQFDEFQIVSSSHDDTILIWDF 412
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS 67
+ + D TIK W+ + C R + V L+ + + + + +R++DVN+
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTG- 203
Query: 68 PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP----VCQMEYESRAAVN 123
+ + + H V+ + F + M + S+D ++ +WD+ +P + ++ RAAVN
Sbjct: 204 -EMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260
Query: 124 TVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
V SGD+ I+VW N+ +CE
Sbjct: 261 VVDFDDKYIVSASGDR--TIKVW----NTSTCEF 288
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD-VNS 65
++ + S D TI+ W+ + G C R ++ + V + NK ++ A + I+++D V +
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAA 366
Query: 66 SSPQP------VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQME 115
P+ + + +H+ V + F D + S S D T+ IWD L P Q E
Sbjct: 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE 421
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 7/149 (4%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
++ T S D T++ W+ +G T+ + V L N + + + I ++D+ S
Sbjct: 185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASP 243
Query: 67 SPQPVMS-YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTV 125
+ + H V V F D ++ S S D T+K+W+ C+ +
Sbjct: 244 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN--TSTCEFVRTLNGHKRGI 299
Query: 126 V-LHPNQTELISGDQNGNIRVWDLTANSC 153
L ++SG + IR+WD+ +C
Sbjct: 300 ACLQYRDRLVVSGSSDNTIRLWDIECGAC 328
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRV 145
Q D + SG D T+KIWD C+ + + L ++ +I+G + +RV
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQYDERVIITGSSDSTVRV 197
Query: 146 WDL 148
WD+
Sbjct: 198 WDV 200
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 1 MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYLAAAGNPHIR 59
++Q + ++S+DKT++ W+ ++G Y+ S+V + +P N+ L+A I+
Sbjct: 84 LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK 143
Query: 60 LFDVNSSSPQPVMSYDQHTNNVMAVGF----------QCDGNWMYSGSEDGTVKIWDLRA 109
L+++ + H++ V V + Q + S DG +K+W+
Sbjct: 144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF 203
Query: 110 PVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTF 166
+ + VN + + PN + +G ++ + +WD+ L L Y R F
Sbjct: 204 QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI--------LNLTYPQREF 252
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLH 128
P + H + V + + + S S D T+++WDLR + ++ V +V
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 129 PNQTELISGDQNGNIRVWDL 148
P+ +++S I++W++
Sbjct: 128 PDNRQILSAGAEREIKLWNI 147
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 8/151 (5%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH---YLAAAGNPHIRLFDVN 64
+ TAS D T W+ +SG+ ++ + V L++ P++ +++ + ++D+
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 65 SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV-- 122
S Q V +++ H ++V +V + G+ SGS+D T +++DLRA Y + +
Sbjct: 229 SG--QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 123 -NTVVLHPNQTELISGDQNGNIRVWDLTANS 152
++V + L +G + I VWD+ S
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 8/154 (5%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----NPHIRLFD 62
+ ++S D + W++ + + P + V P+ +A G + + FD
Sbjct: 79 IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138
Query: 63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA- 121
N + S HTN + A F + + S DGT +WD+ + + A
Sbjct: 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198
Query: 122 VNTVVLHPNQT--ELISGDQNGNIRVWDLTANSC 153
V + L P++T +SG + VWD+ + C
Sbjct: 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1 MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIR 59
+A + + + + D + K W+ + G C +T +S +N + PN + A + + R
Sbjct: 203 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Query: 60 LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQMEYES 118
LFD+ + S+D + +V F G + +G +D +WD L+A +
Sbjct: 263 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 322
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
V+ + + + + +G + +++W+
Sbjct: 323 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSS 66
+ T+S D T W+ ++G+ T V L + P+ + +++ A + +L+DV
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVN 123
+ ++ H +++ A+ F +GN +GS+D T +++DLRA M Y +
Sbjct: 228 MCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 285
Query: 124 TVVLHPNQTELISGDQNGNIRVWD 147
+V + L++G + N VWD
Sbjct: 286 SVSFSKSGRLLLAGYDDFNCNVWD 309
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ + ++G+ L+D+ + + HT +VM++ D SG+ D + K+W
Sbjct: 165 DNQIVTSSGDTTCALWDIETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
Query: 106 DLRAPVCQMEYESRAA-VNTVVLHPNQTELISGDQNGNIRVWDLTAN 151
D+R +C+ + + +N + PN +G + R++DL A+
Sbjct: 223 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1 MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIR 59
+A + + + + D + K W+ + G C +T +S +N + PN + A + + R
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 60 LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQMEYES 118
LFD+ + S+D + +V F G + +G +D +WD L+A +
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
V+ + + + + +G + +++W+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSS 66
+ T+S D T W+ ++G+ T V L + P+ + +++ A + +L+DV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVN 123
+ ++ H +++ A+ F +GN +GS+D T +++DLRA M Y +
Sbjct: 217 MCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 124 TVVLHPNQTELISGDQNGNIRVWD 147
+V + L++G + N VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ + ++G+ L+D+ + + HT +VM++ D SG+ D + K+W
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 106 DLRAPVCQMEYESRAA-VNTVVLHPNQTELISGDQNGNIRVWDLTAN 151
D+R +C+ + + +N + PN +G + R++DL A+
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1 MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIR 59
+A + + + + D + K W+ + G C +T +S +N + PN + A + + R
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 60 LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQMEYES 118
LFD+ + S+D + +V F G + +G +D +WD L+A +
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
V+ + + + + +G + +++W+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSS 66
+ T+S D T W+ ++G+ T V L + P+ + +++ A + +L+DV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVN 123
+ ++ H +++ A+ F +GN +GS+D T +++DLRA M Y +
Sbjct: 217 MCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 124 TVVLHPNQTELISGDQNGNIRVWD 147
+V + L++G + N VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ + ++G+ L+D+ + + HT +VM++ D SG+ D + K+W
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 106 DLRAPVCQMEYESRAA-VNTVVLHPNQTELISGDQNGNIRVWDLTAN 151
D+R +C+ + + +N + PN +G + R++DL A+
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1 MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIR 59
+A + + + + D + K W+ + G C +T +S +N + PN + A + + R
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 60 LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQMEYES 118
LFD+ + S+D + +V F G + +G +D +WD L+A +
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
V+ + + + + +G + +++W+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSS 66
+ T+S D T W+ ++G+ T V L + P+ + +++ A + +L+DV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVN 123
+ ++ H +++ A+ F +GN +GS+D T +++DLRA M Y +
Sbjct: 217 MCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 124 TVVLHPNQTELISGDQNGNIRVWD 147
+V + L++G + N VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ + ++G+ L+D+ + + HT +VM++ D SG+ D + K+W
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 106 DLRAPVCQMEYESRAA-VNTVVLHPNQTELISGDQNGNIRVWDLTAN 151
D+R +C+ + + +N + PN +G + R++DL A+
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Query: 1 MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIR 59
+A + + + + D + K W+ + G C +T +S +N + PN + A + + R
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 60 LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVCQMEYES 118
LFD+ + S+D + +V F G + +G +D +WD L+A +
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWD 147
V+ + + + + +G + +++W+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSS 66
+ T+S D T W+ ++G+ T V L + P+ + +++ A + +L+DV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVN 123
+ ++ H +++ A+ F +GN +GS+D T +++DLRA M Y +
Sbjct: 217 MCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 124 TVVLHPNQTELISGDQNGNIRVWD 147
+V + L++G + N VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ + ++G+ L+D+ + + HT +VM++ D SG+ D + K+W
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFT--GHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 106 DLRAPVCQMEYESRAA-VNTVVLHPNQTELISGDQNGNIRVWDLTAN 151
D+R +C+ + + +N + PN +G + R++DL A+
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 15/156 (9%)
Query: 4 PSVILATASYDKTIKFW-----EAKSGRCYRTIQYPDSQVNRLEITPNKHY-LAAAGNPH 57
P +IL+ AS DKTI W E G R ++ V+ + I+ + + L+ + +
Sbjct: 51 PDMILS-ASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109
Query: 58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ--ME 115
+RL+D+ + + + HT +V++V F D + SGS D T+K+W+ VC+ ++
Sbjct: 110 LRLWDLTTGTT--TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTVQ 166
Query: 116 YESRAA-VNTVVLHPNQTE--LISGDQNGNIRVWDL 148
ES + V+ V PN + ++S + ++VW+L
Sbjct: 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQ--VNRLEITPNKHYLAAAGNPHI------R 59
+ + S DKTIK W G C T+Q V+ + +PN + NP I +
Sbjct: 143 IVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPN------SSNPIIVSCGWDK 195
Query: 60 LFDV-NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
L V N ++ + ++ HT + V DG+ SG +DG +WDL +
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
+N + PN+ L + +I++WDL EL
Sbjct: 256 GDIINALCFSPNRYWLCAA-TGPSIKIWDLEGKIIVDEL 293
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
+ A+ D W+ G+ T+ D +N L +PN+++L AA P I+++D+
Sbjct: 229 LCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGPSIKIWDLEGK 287
Query: 67 S-----PQPVMSYDQHTN--NVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
Q V+S ++ + DG +++G D V++W +
Sbjct: 288 IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 15/157 (9%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNS 65
I+ + +DK +K W + + +N + ++P+ A+ G + L+D+N
Sbjct: 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTV 125
+ N A+ F + W+ + + ++KIWDL + E + +
Sbjct: 247 GKHLYTLDGGDIIN---ALCFSPNRYWLCAATGP-SIKIWDLEGKIIVDELKQEVISTSS 302
Query: 126 VLHPNQT----------ELISGDQNGNIRVWDLTANS 152
P Q L +G + +RVW +T +
Sbjct: 303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 93 MYSGSEDGTVKIWDLRAPVCQMEYESRAA------VNTVVLHPNQTELISGDQNGNIRVW 146
+ S S D T+ +W L RA V+ VV+ + +SG +G +R+W
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 147 DLTANSCS 154
DLT + +
Sbjct: 114 DLTTGTTT 121
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 15/156 (9%)
Query: 4 PSVILATASYDKTIKFW-----EAKSGRCYRTIQYPDSQVNRLEITPNKHY-LAAAGNPH 57
P +IL+ AS DKTI W E G R ++ V+ + I+ + + L+ + +
Sbjct: 28 PDMILS-ASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 86
Query: 58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ--ME 115
+RL+D+ + + + HT +V++V F D + SGS D T+K+W+ VC+ ++
Sbjct: 87 LRLWDLTTGTT--TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTVQ 143
Query: 116 YESRAA-VNTVVLHPNQTE--LISGDQNGNIRVWDL 148
ES + V+ V PN + ++S + ++VW+L
Sbjct: 144 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQ--VNRLEITPNKHYLAAAGNPHI------R 59
+ + S DKTIK W G C T+Q V+ + +PN + NP I +
Sbjct: 120 IVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPN------SSNPIIVSCGWDK 172
Query: 60 LFDV-NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
L V N ++ + ++ HT + V DG+ SG +DG +WDL +
Sbjct: 173 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157
+N + PN+ L + +I++WDL EL
Sbjct: 233 GDIINALCFSPNRYWLCAA-TGPSIKIWDLEGKIIVDEL 270
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
+ A+ D W+ G+ T+ D +N L +PN+++L AA P I+++D+
Sbjct: 206 LCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGPSIKIWDLEGK 264
Query: 67 S-----PQPVMSYDQHTN--NVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
Q V+S ++ + DG +++G D V++W +
Sbjct: 265 IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 15/157 (9%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNS 65
I+ + +DK +K W + + +N + ++P+ A+ G + L+D+N
Sbjct: 164 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTV 125
+ N A+ F + W+ + + ++KIWDL + E + +
Sbjct: 224 GKHLYTLDGGDIIN---ALCFSPNRYWLCAATGP-SIKIWDLEGKIIVDELKQEVISTSS 279
Query: 126 VLHPNQT----------ELISGDQNGNIRVWDLTANS 152
P Q L +G + +RVW +T +
Sbjct: 280 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 316
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 93 MYSGSEDGTVKIWDLRAPVCQMEYESRAA------VNTVVLHPNQTELISGDQNGNIRVW 146
+ S S D T+ +W L RA V+ VV+ + +SG +G +R+W
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 147 DLTANSCS 154
DLT + +
Sbjct: 91 DLTTGTTT 98
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGN 55
+ + ++ + S DKTIK W K G+C T+ + V+++ + PN+ ++A +
Sbjct: 117 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 56 PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
++ +++N Q + H +N+ + DG + S +DG + +W+L A
Sbjct: 176 KMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
++ V ++ PN+ L + G I+V+ L
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATG-IKVFSL 265
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 5/164 (3%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSP 68
+AS+DKT++ W+ +G Y+ S V ++I + + + + I+++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 69 QPVMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNT 124
++ ++ + V V + D + S D VK W+L + ++ + +NT
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLF 168
+ P+ T + S ++G I +W+L A L Q + + F
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD---- 62
++A+A D I W + + T+ D +V L +PN+++LAAA I++F
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 63 --VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
V+ P+ + +++ + DG +++G D +++W
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
PV S+ H++ V DG + S S D T+++WD+ Q ++ V +V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
+ +ISG ++ I+VW + + LG
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLG 146
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGN 55
+ + ++ + S DKTIK W K G+C T+ + V+++ + PN+ ++A +
Sbjct: 117 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 56 PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
++ +++N Q + H +N+ + DG + S +DG + +W+L A
Sbjct: 176 KMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
++ V ++ PN+ L + G I+V+ L
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATG-IKVFSL 265
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 5/164 (3%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSP 68
+AS+DKT++ W+ +G Y+ S V ++I + + + + I+++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 69 QPVMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNT 124
++ ++ + V V + D + S D VK W+L + ++ + +NT
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLF 168
+ P+ T + S ++G I +W+L A L Q + + F
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD---- 62
++A+A D I W + + T+ D +V L +PN+++LAAA I++F
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 63 --VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
V+ P+ + +++ + DG +++G D +++W
Sbjct: 269 YLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
PV S+ H++ V DG + S S D T+++WD+ Q ++ V +V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
+ +ISG ++ I+VW + + LG
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLG 146
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGN 55
+ + ++ + S DKTIK W K G+C T+ + V+++ + PN+ ++A +
Sbjct: 117 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 56 PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
++ +++N Q + H +N+ + DG + S +DG + +W+L A
Sbjct: 176 KMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
++ V ++ PN+ L + G I+V+ L
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATG-IKVFSL 265
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 5/164 (3%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSP 68
+AS+DKT++ W+ +G Y+ S V ++I + + + + I+++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 69 QPVMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNT 124
++ ++ + V V + D + S D VK W+L + ++ + +NT
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLF 168
+ P+ T + S ++G I +W+L A L Q + + F
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD---- 62
++A+A D I W + + T+ D +V L +PN+++LAAA I++F
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 63 --VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
V+ P+ + +++ + DG +++G D +++W
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
PV S+ H++ V DG + S S D T+++WD+ Q ++ V +V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
+ +ISG ++ I+VW + + LG
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLG 146
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGN 55
+ + ++ + S DKTIK W K G+C T+ + V+++ + PN+ ++A +
Sbjct: 117 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 56 PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
++ +++N Q + H +N+ + DG + S +DG + +W+L A
Sbjct: 176 KMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
++ V ++ PN+ L + G I+V+ L
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATG-IKVFSL 265
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 5/164 (3%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSP 68
+AS+DKT++ W+ +G Y+ S V ++I + + + + I+++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 69 QPVMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNT 124
++ ++ + V V + D + S D VK W+L + ++ + +NT
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLF 168
+ P+ T + S ++G I +W+L A L Q + + F
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 245
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD---- 62
++A+A D I W + + T+ D +V L +PN+++LAAA I++F
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 63 --VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
V+ P+ + +++ + DG +++G D +++W
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
PV S+ H++ V DG + S S D T+++WD+ Q ++ V +V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
+ +ISG ++ I+VW + + LG
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLG 146
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGN 55
+ + ++ + S DKTIK W K G+C T+ + V+++ + PN+ ++A +
Sbjct: 111 KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 169
Query: 56 PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
++ +++N Q + H +N+ + DG + S +DG + +W+L A
Sbjct: 170 KMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
++ V ++ PN+ L + G I+V+ L
Sbjct: 228 LSAQDEVFSLAFSPNRYWLAAATATG-IKVFSL 259
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 5/164 (3%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSP 68
+AS+DKT++ W+ +G Y+ S V ++I + + + + I+++ +
Sbjct: 76 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 135
Query: 69 QPVMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNT 124
++ ++ + V V + D + S D VK W+L + ++ + +NT
Sbjct: 136 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 195
Query: 125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLF 168
+ P+ T + S ++G I +W+L A L Q + + F
Sbjct: 196 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF 239
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD---- 62
++A+A D I W + + T+ D +V L +PN+++LAAA I++F
Sbjct: 204 LIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQ 262
Query: 63 --VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
V+ P+ + +++ + DG +++G D +++W
Sbjct: 263 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
PV S+ H++ V DG + S S D T+++WD+ Q ++ V +V +
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
+ +ISG ++ I+VW + + LG
Sbjct: 111 KKASMIISGSRDKTIKVWTIKGQCLATLLG 140
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-------YLAAAGNPHIRL 60
+ + S DKTIK W K G+C T+ + V+++ + PN+ ++A + ++
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 61 FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
+++N Q + H +N+ + DG + S +DG + +W+L A ++
Sbjct: 181 WNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD 238
Query: 121 AVNTVVLHPNQTELISGDQNGNIRVWDL 148
V ++ PN+ L + G I+V+ L
Sbjct: 239 EVFSLAFSPNRYWLAAATATG-IKVFSL 265
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 5/164 (3%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSP 68
+AS+DKT++ W+ +G Y+ S V ++I ++ + + I+++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCL 141
Query: 69 QPVMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-AAVNT 124
++ ++ + V V + D + S D VK W+L + ++ + +NT
Sbjct: 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINT 201
Query: 125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLF 168
+ P+ T + S ++G I +W+L A L Q + + F
Sbjct: 202 LTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAF 245
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFD---- 62
++A+A D I W + + T+ D +V L +PN+++LAAA I++F
Sbjct: 210 LIASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268
Query: 63 --VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
V+ P+ + +++ + DG +++G D +++W
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL-RAPVCQMEYESRAAVNTVVLH 128
PV S+ H++ V DG + S S D T+++WD+ Q ++ V +V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158
+ +ISG ++ I+VW + + LG
Sbjct: 117 KKASXIISGSRDKTIKVWTIKGQCLATLLG 146
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 18/156 (11%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTI--QYPDSQ-VNRLEITPNK----HYLAAAGNPHIRL 60
L T S D+T W+ +G+ ++P + L ++ N +++ + + +RL
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 61 FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120
+D+ +S + V +Y H ++ +V F DG +GS+DGT +++D+R Q++ +R
Sbjct: 233 WDLRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-QLQVYNRE 290
Query: 121 ---------AVNTVVLHPNQTELISGDQNGNIRVWD 147
V +V + L +G NG+ VWD
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 27 CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86
C RT+Q +V L+ TP K+++ +A RL N+ + Q + H VM F
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDG-RLIVWNALTSQKTHAIKLHCPWVMECAF 116
Query: 87 QCDGNWMYSGSEDGTVKIWDLRA--------PVCQMEYESRAAVNTVVLHPNQ-TELISG 137
+G + G D I++L + PV ++ + ++ P+Q T LI+G
Sbjct: 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG 176
Query: 138 DQNGNIRVWDLT 149
+ +WD+T
Sbjct: 177 SGDQTCVLWDVT 188
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTI-QYPDSQVNRLEITPNKHY-----LAAAGNPHIRLF 61
T S D T + ++ ++G + + PD N L I + + L AG + +
Sbjct: 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323
Query: 62 DVNSSSPQPVMSY----DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
++ + V++ + H + +G DG+ + +GS D +KIW
Sbjct: 324 VWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 6 VILATASYDKTIKFW--EAKSGRCYRTIQYPDSQ-VNRLEITPNKHYLAAAG-NPHIRLF 61
+LA+ D+ I+ W E S C + + V ++ +P +YLA+A + ++
Sbjct: 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 62 DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA 121
N + V + + H N V +V + GN + + S D +V +W++ + EYE +
Sbjct: 89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE---EDEYECVSV 145
Query: 122 VNT-------VVLHPNQTELISGDQNGNIRV 145
+N+ VV HP+Q L S + +++
Sbjct: 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ---VNRLEITPNKHYLAAAG-NPHIRLFD 62
+LAT S DK++ WE Y + +S V + P++ LA+A + ++L+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ + H + V ++ F G + S S+D TV+IW
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCY-RTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFDVN 64
+ + S D T+K W ++ +T + + V + P A+G + ++++ +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 65 SSSPQPVMSYDQHTN-NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-V 122
S+P ++ Q N + D +M + S+D T+KIWD + C E + V
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR 164
+ V HP +ISG ++G +++W+ +++ E L GL
Sbjct: 232 SFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLE 271
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNSS 66
+ T Y ++ W ++ R+IQ ++ V + K+++ + IR+F+ N+
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYESRA-AVNT 124
+ V+ ++ H + + ++ ++ SGS+D TVK+W+ + +E V
Sbjct: 88 --EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145
Query: 125 VVLHP-NQTELISGDQNGNIRVWDL 148
V +P + + SG + ++VW L
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 7/172 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRLFDVNSS 66
+ S D I+ + +G + + + + P K Y L+ + + ++L++ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 67 SPQPVMSYDQHTNNVMAVGFQ-CDGNWMYSGSEDGTVKIWDL--RAPVCQMEYESRAAVN 123
+++ H + VM V F D + SG D TVK+W L P + VN
Sbjct: 130 WALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 124 TVVLHP--NQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDM 173
V +P ++ +I+ + I++WD SC L +F +H +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCY-RTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFDVN 64
+ + S D T+K W ++ +T + + V + P A+G + ++++ +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 65 SSSPQPVMSYDQHTN-NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-V 122
S+P ++ Q N + D +M + S+D T+KIWD + C E + V
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR 164
+ V HP +ISG ++G +++W+ +++ E L GL
Sbjct: 232 SFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLE 271
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNSS 66
+ T Y ++ W ++ R+IQ ++ V + K+++ + IR+F+ N+
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYESRA-AVNT 124
+ V+ ++ H + + ++ ++ SGS+D TVK+W+ + +E V
Sbjct: 88 --EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145
Query: 125 VVLHP-NQTELISGDQNGNIRVWDL 148
V +P + + SG + ++VW L
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 7/172 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRLFDVNSS 66
+ S D I+ + +G + + + + P K Y L+ + + ++L++ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 67 SPQPVMSYDQHTNNVMAVGFQ-CDGNWMYSGSEDGTVKIWDL--RAPVCQMEYESRAAVN 123
+++ H + VM V F D + SG D TVK+W L P + VN
Sbjct: 130 WALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 124 TVVLHP--NQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDM 173
V +P ++ +I+ + I++WD SC L +F +H +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKH---YLAAAGNPHIRLFD 62
+ + D ++ W K G C T+ V+ + +P+ ++ + ++++D
Sbjct: 124 IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
+ ++ + V HTN V +V DG+ S +DG ++WDL E + A +
Sbjct: 183 L--ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161
N + PN+ + + + G IR++DL EL ++
Sbjct: 241 NQICFSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEH 278
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 8 LATASYDKTIKFW---------EAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH- 57
+ + S DKT+ W E G R ++ + V+ + ++ N ++ +A H
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE 117
+RL+++ + Q + HT +V++V F D + SG D +++W+++ M
Sbjct: 91 LRLWNLQNGQCQ--YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC--MHTL 146
Query: 118 SRAA----VNTVVLHP--NQTELISGDQNGNIRVWDLTANSCSCEL 157
SR A V+ V P + ++SG + ++VWDL +L
Sbjct: 147 SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL 192
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66
+ A++ D + W+ G + + +N++ +PN++++ AA IR+FD+ +
Sbjct: 210 LCASSDKDGVARLWDLTKGEALSEMA-AGAPINQICFSPNRYWMCAATEKGIRIFDLENK 268
Query: 67 SPQPVMSYDQHTNN-----VMAVGFQCDGNWMYSGSEDGTVKIWDL 107
++ + + +++ + DG+ +YSG D +++W +
Sbjct: 269 DIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHI-RLFDVNS 65
++ + +D +K W+ +GR ++ + V + ++P+ A++ + RL+D+
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR--------APVCQMEYE 117
M+ N + F + WM + +E G ++I+DL AP Q +
Sbjct: 228 GEALSEMAAGAPINQIC---FSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSKK 283
Query: 118 SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152
++ + + L SG + IRVW ++ N+
Sbjct: 284 IVPECVSIAWSADGSTLYSGYTDNVIRVWGVSENA 318
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 3 QPSVILATASYDKTIKFWEAKSGRCY-RTIQYPDSQVNRLEITPNKHYLAAAG--NPHIR 59
+P V+ + S D T+K W ++ +T + + V + P A+G + ++
Sbjct: 109 KPYVL--SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 60 LFDVNSSSPQPVMSYDQHTN-NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
++ + S+P ++ Q N + D +M + S+D T+KIWD + C E
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 119 RAA-VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR 164
+ V+ V HP +ISG ++G +++W+ +++ E L GL
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLE 271
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNSS 66
+ T Y ++ W ++ R+IQ ++ V + K+++ + IR+F+ N+
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYESRA-AVNT 124
+ V+ ++ H + + ++ ++ SGS+D TVK+W+ + +E V
Sbjct: 88 --EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145
Query: 125 VVLHP-NQTELISGDQNGNIRVWDL 148
V +P + + SG + ++VW L
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 7/169 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRLFDVNSS 66
+ S D I+ + +G + + + + P K Y L+ + + ++L++ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 67 SPQPVMSYDQHTNNVMAVGFQ-CDGNWMYSGSEDGTVKIWDL--RAPVCQMEYESRAAVN 123
+++ H + VM V F D + SG D TVK+W L P + VN
Sbjct: 130 WALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 124 TVVLHP--NQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYH 170
V +P ++ +I+ + I++WD SC L +F +H
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 3 QPSVILATASYDKTIKFWEAKSGRCY-RTIQYPDSQVNRLEITPNKHYLAAAG--NPHIR 59
+P V+ + S D T+K W ++ +T + + V + P A+G + ++
Sbjct: 109 KPYVL--SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 60 LFDVNSSSPQPVMSYDQHTN-NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118
++ + S+P ++ Q N + D +M + S+D T+KIWD + C E
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 119 RAA-VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR 164
+ V+ V HP +ISG ++G +++W+ +++ E L GL
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLE 271
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNSSSP 68
T Y ++ W ++ R+IQ ++ V + K+++ + IR+F+ N+
Sbjct: 30 TTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-- 87
Query: 69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYESRA-AVNTVV 126
+ V+ ++ H + + ++ ++ SGS+D TVK+W+ + +E V V
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 127 LHPNQ-TELISGDQNGNIRVWDL 148
+P + SG + ++VW L
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSL 170
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 7/169 (4%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRLFDVNSS 66
+ S D I+ + +G + + + + P K Y L+ + + ++L++ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 67 SPQPVMSYDQHTNNVMAVGFQ-CDGNWMYSGSEDGTVKIWDL--RAPVCQMEYESRAAVN 123
+++ H + VM V F D + SG D TVK+W L P + VN
Sbjct: 130 WALE-QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 124 TVVLHP--NQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYH 170
V +P ++ +I+ + I++WD SC L +F +H
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 45 PNKHYLAAAGNPHIRLFDVN---SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT 101
P +H + G ++++D++ + SP + N + + DG + G E T
Sbjct: 62 PTRH-VYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120
Query: 102 VKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148
+ IWDL AP +++ E S A + + P+ S +GNI VWDL
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 27 CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86
CY PDS+V + + +I ++D+++ + V + HT+ +
Sbjct: 144 CYALAISPDSKV----------CFSCCSDGNIAVWDLHNQTL--VRQFQGHTDGASCIDI 191
Query: 87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRV 145
DG +++G D TV+ WDLR +++ + + ++ P L G ++ N+ V
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 62/144 (43%), Gaps = 9/144 (6%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSS 66
L T D T++ W+ + GR + + SQ+ L P +LA + ++ + VN
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDF-TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--AAVNT 124
H + V+++ F G W S +D + W R P ++S+ ++V +
Sbjct: 257 DK---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW--RTPYGASIFQSKESSSVLS 311
Query: 125 VVLHPNQTELISGDQNGNIRVWDL 148
+ + +++G + V+++
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYEV 335
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ + + A + IR++D S + + ++ H V A+ + G + SGS D TV++W
Sbjct: 132 DNYVITGADDKXIRVYD--SINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVW 188
Query: 106 DLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161
D++ C +E S +V + N +++G ++ + VW L S + G ++
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ 69
+AS D TI+ W+ ++G T+Q + V L ++ +K ++AA + IR +D N S +
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRK 385
Query: 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109
SY HTN F N + SGSE+ I++LR+
Sbjct: 386 --FSY-HHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRS 421
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 23/165 (13%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEIT--PNKHYLAAAGNP---HIRLF 61
IL + S D+T++ W+ K G C + +S V L+I N Y+ H+
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 62 DVNSSSPQPVMSYDQ----HT--NNVMAVG-----------FQCDGNWMYSGSEDGTVKI 104
SS P +D HT N VG GN + SGS D T+ +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 105 WDLRAPVCQMEYESRA-AVNTVVLHPNQTELISGDQNGNIRVWDL 148
WD+ C + + + + IS + IR+WDL
Sbjct: 295 WDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 5/135 (3%)
Query: 7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
I+ + SYD T+ W+ +C Y + D + + K ++A+ + IR++D+ +
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTV 125
+ Y + + + ++ S + DG+++ WD + Y
Sbjct: 342 GE----LXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 397
Query: 126 VLHPNQTELISGDQN 140
+ + L+SG +N
Sbjct: 398 TFYVSDNILVSGSEN 412
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/69 (18%), Positives = 33/69 (47%)
Query: 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRV 145
Q + N++ +G++D ++++D ++ + + + L+SG + +RV
Sbjct: 128 LQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 187
Query: 146 WDLTANSCS 154
WD+ C+
Sbjct: 188 WDIKKGCCT 196
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ + + A + IR++D S + + ++ H V A+ + G + SGS D TV++W
Sbjct: 132 DNYVITGADDKMIRVYD--SINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVW 188
Query: 106 DLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161
D++ C +E S +V + N +++G ++ + VW L S + G ++
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ 69
+AS D TI+ W+ ++G T+Q + V L ++ +K ++AA + IR +D N S +
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRK 385
Query: 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109
SY HTN F N + SGSE+ I++LR+
Sbjct: 386 --FSY-HHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRS 421
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 23/165 (13%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEIT--PNKHYLAAAGNP---HIRLF 61
IL + S D+T++ W+ K G C + +S V L+I N Y+ H+
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 62 DVNSSSPQPVMSYDQ----HT--NNVMAVG-----------FQCDGNWMYSGSEDGTVKI 104
SS P +D HT N VG GN + SGS D T+ +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 105 WDLRAPVCQMEYESRA-AVNTVVLHPNQTELISGDQNGNIRVWDL 148
WD+ C + + + + IS + IR+WDL
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 5/135 (3%)
Query: 7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS 65
I+ + SYD T+ W+ +C Y + D + + K ++A+ + IR++D+ +
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTV 125
+ Y + + + ++ S + DG+++ WD + Y
Sbjct: 342 GE----LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 397
Query: 126 VLHPNQTELISGDQN 140
+ + L+SG +N
Sbjct: 398 TFYVSDNILVSGSEN 412
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/69 (18%), Positives = 33/69 (47%)
Query: 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRV 145
Q + N++ +G++D ++++D ++ + + + L+SG + +RV
Sbjct: 128 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 187
Query: 146 WDLTANSCS 154
WD+ C+
Sbjct: 188 WDIKKGCCT 196
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 77 HTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQ 131
H V V +W + + S D TVKIWDLR + + R VN P+
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 132 TELISGDQNGNIRVWDLTANSCSCELGL 159
L++ DQ IRV+ +A+ C LGL
Sbjct: 309 ARLLTTDQKSEIRVY--SASQWDCPLGL 334
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQY 33
LATAS D+T+K W+ + R + Y
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLY 291
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 77 HTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQ 131
H V V +W + + S D TVKIWDLR + + R VN P+
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 132 TELISGDQNGNIRVWDLTANSCSCELGL 159
L++ DQ IRV+ +A+ C LGL
Sbjct: 309 ARLLTTDQKSEIRVY--SASQWDCPLGL 334
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQY 33
LATAS D+T+K W+ + R + Y
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLY 291
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 77 HTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQ 131
H V V +W + + S D TVKIWDLR + + R VN P+
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 132 TELISGDQNGNIRVWDLTANSCSCELGL 159
L++ DQ IRV+ +A+ C LGL
Sbjct: 310 ARLLTTDQKSEIRVY--SASQWDCPLGL 335
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQY 33
LATAS D+T+K W+ + R + Y
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLY 292
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 34 PDSQVNRLEITP----NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD 89
PD + L +P +A + +R ++V S + HT V+ V + D
Sbjct: 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD 97
Query: 90 GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTV--VLHPNQTELISGDQNGNIRVWD 147
G+ +++ S D T K+WDL + + A V T+ + PN + +++G + ++ WD
Sbjct: 98 GSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 18/163 (11%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS 67
+ T S+DKT+KFW+ +S +Q P+ I P A + + S
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 68 PQPVMSYDQHTNNVMAV--GFQCDGNWMYSGSEDGTVKIWDLRAP---------VCQMEY 116
+ + S +H + +A+ Q GS +G V I + P C
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 117 ESRA-------AVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152
+ AVN + HP L + +G WD A +
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHY---LAAAGNPHIRLFDVNSS 66
TAS DKT K W+ S + + Q+ D+ V + +Y + + + ++ +D SS
Sbjct: 103 TASCDKTAKMWDLSSNQAIQIAQH-DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161
Query: 67 SPQPVM 72
+P V+
Sbjct: 162 NPMMVL 167
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 33/173 (19%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYL-AAAGNPHIRL---- 60
ILAT S D+ IK +++Y D + ++ L+ T +K + + A PH L
Sbjct: 26 ILATGSTDRKIKL---------VSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG 76
Query: 61 -FDVNSSSPQPVMSYDQ------------HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
FD S S D+ H N V V + DG ++ + S D +V IW+
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136
Query: 108 RAPVCQME-----YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155
+ E E V V+ HP++ L S + +R+W + C
Sbjct: 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC 189
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 8 LATASYDKTIKFWEA-KSGR---CYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFD 62
LAT S DK++ WE +SG C +Q V + P++ LA++ + +R++
Sbjct: 122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181
Query: 63 VNSSSPQPVMSYDQHTNNVMAVGF-QCDGNW-MYSGSEDGTVKIW 105
+ V + H V + F + +G + + SGS+D TV++W
Sbjct: 182 DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 30 TIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-----PVMSYDQHTNNVMAV 84
T+ +V L P+ +LA+ GN + L +V S+P P+ ++ QH V AV
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDN--LVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 85 GF---QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG 137
+ Q + G+ D ++IW++ + C ++ + V +++ P+ ELISG
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 258
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN--PHIRLFDVNS 65
LA + ++ W+ + + R + ++V L Y+ ++G+ HI DV
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRV 138
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP------VCQMEYESR 119
+ V + H+ V + + DG + SG D V +W AP Q + +
Sbjct: 139 AEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP-SAPGEGGWVPLQTFTQHQ 196
Query: 120 AAVNTVVLHPNQTELIS---GDQNGNIRVWDLTANSC 153
AV V P Q+ +++ G + +IR+W++ + +C
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 5 SVILATA--SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLF 61
S +LAT + D+ I+ W SG C + SQV + +P+ K ++ G +L
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLV 267
Query: 62 DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ V HT+ V+++ DG + S + D T+++W
Sbjct: 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 50 LAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109
LA A + + L+ +S ++ +Q + +V + +GN++ G+ V++WD++
Sbjct: 39 LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 98
Query: 110 PVCQMEYESRAAVNTVVLHPNQTELISGDQNGNI 143
S +A L N L SG ++G+I
Sbjct: 99 QKRLRNMTSHSA-RVGSLSWNSYILSSGSRSGHI 131
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP--NKHYLAAAG--NPHIRLFD 62
+ ++S+DKT+K W+ + + + ++ V ++P KH L A G P ++L D
Sbjct: 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEET-VYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172
Query: 63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLR 108
+ S S ++ H ++AV + ++ + + S D VK+WD+R
Sbjct: 173 LKSGSCSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 89 DGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA--------------AVNTVVLHPNQTEL 134
+G +M SG DG + ++DL Q Y +A +V TV +P+ T +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 135 ISGDQ-NGNIRVWD 147
+ + ++VWD
Sbjct: 115 FTSSSFDKTLKVWD 128
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 29/165 (17%)
Query: 7 ILATASYDKTIKFWEAK------------SGRCYRTIQYPDS----QVNRLEITPNK-HY 49
ILATAS D +K W+ + +G+ + ++ ++ +VN L T + H
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 50 LAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV-----MAVGFQCDGNWMYS--GSEDGTV 102
L + +RL++ +S+ +++Y + NN V C +++ GS T+
Sbjct: 261 LTVGTDNRMRLWN-SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS---TI 316
Query: 103 KIWDL-RAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW 146
++ + M V+ V N EL SG ++ NI W
Sbjct: 317 AVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 30 TIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-----PVMSYDQHTNNVMAV 84
T+ +V L P+ +LA+ GN + L +V S+P P+ ++ QH V AV
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDN--LVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 85 GF---QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG 137
+ Q + G+ D ++IW++ + C ++ + V +++ P+ ELISG
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 338
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN--PHIRLFDVNS 65
LA + ++ W+ + + R + ++V L Y+ ++G+ HI DV
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRV 218
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP------VCQMEYESR 119
+ V + H+ V + + DG + SG D V +W AP Q + +
Sbjct: 219 AEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP-SAPGEGGWVPLQTFTQHQ 276
Query: 120 AAVNTVVLHPNQTELIS---GDQNGNIRVWDLTANSC 153
AV V P Q+ +++ G + +IR+W++ + +C
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 313
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 5 SVILATA--SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLF 61
S +LAT + D+ I+ W SG C + SQV + +P+ K ++ G +L
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLV 347
Query: 62 DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA--PVCQMEYESR 119
+ V HT+ V+++ DG + S + D T+++W P + E E
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKA 407
Query: 120 AAVNTVVLH 128
+A + ++H
Sbjct: 408 SAAKSSLIH 416
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 21 EAKSGRCYRTIQYPDSQVNRLEITP---NKHYL-----------AAAGNPHIRLFDVNSS 66
+A G +T +Y S +R+ P N +YL A A + + L+ +S
Sbjct: 76 KATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSG 135
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
++ +Q + +V + +GN++ G+ V++WD++ S +A
Sbjct: 136 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA-RVGS 194
Query: 127 LHPNQTELISGDQNGNI 143
L N L SG ++G+I
Sbjct: 195 LSWNSYILSSGSRSGHI 211
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 30 TIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-----PVMSYDQHTNNVMAV 84
T+ +V L P+ +LA+ GN + L +V S+P P+ ++ QH V AV
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDN--LVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 85 GF---QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG 137
+ Q + G+ D ++IW++ + C ++ + V +++ P+ ELISG
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 349
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN--PHIRLFDVNS 65
LA + ++ W+ + + R + ++V L Y+ ++G+ HI DV
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRV 229
Query: 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP------VCQMEYESR 119
+ V + H+ V + + DG + SG D V +W AP Q + +
Sbjct: 230 AEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP-SAPGEGGWVPLQTFTQHQ 287
Query: 120 AAVNTVVLHPNQTELIS---GDQNGNIRVWDLTANSC 153
AV V P Q+ +++ G + +IR+W++ + +C
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 324
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 5 SVILATA--SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLF 61
S +LAT + D+ I+ W SG C + SQV + +P+ K ++ G +L
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLV 358
Query: 62 DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA--PVCQMEYESR 119
+ V HT+ V+++ DG + S + D T+++W P + E E
Sbjct: 359 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKA 418
Query: 120 AAVNTVVLH 128
+A + ++H
Sbjct: 419 SAAKSSLIH 427
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 21 EAKSGRCYRTIQYPDSQVNRLEITP---NKHYL-----------AAAGNPHIRLFDVNSS 66
+A G +T +Y S +R+ P N +YL A A + + L+ +S
Sbjct: 87 KATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSG 146
Query: 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126
++ +Q + +V + +GN++ G+ V++WD++ S +A
Sbjct: 147 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA-RVGS 205
Query: 127 LHPNQTELISGDQNGNI 143
L N L SG ++G+I
Sbjct: 206 LSWNSYILSSGSRSGHI 222
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNR-LEITPNKHYLAAAGNPHIRLFDVNSSSP 68
TAS DKTIK W+ + + +T + V R L + + H+++ + + I+L D ++
Sbjct: 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTG-- 215
Query: 69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ +Y+ H + V + +G+ + S ED TV+IW
Sbjct: 216 DVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPNKHYLAAAGNP----HIRLFD 62
+A+ S D T++ W +K + T+ Y +N + K L G + LF
Sbjct: 32 VASVSRDGTVRLW-SKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLF- 89
Query: 63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
+S P+ + H NV ++ FQ DG + SGS D T K+W + V ++ + +
Sbjct: 90 -ATSGEDPLYTLIGHQGNVCSLSFQ-DGV-VISGSWDKTAKVWKEGSLVYNLQAHNASVW 146
Query: 123 NTVVLHPNQTELISGDQNGNIRVW 146
+ V+ ++ + ++ + I++W
Sbjct: 147 DAKVVSFSENKFLTASADKTIKLW 170
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQV---NRLEITPNKHYLAAAGNPHIRLFDV 63
++ + S+DKT K W K G +Q ++ V + + NK +L A+ + I+L+
Sbjct: 116 VVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENK-FLTASADKTIKLW-- 170
Query: 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-V 122
+ + + ++ N+V+ D S S DG +K+ D YE + V
Sbjct: 171 --QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFV 228
Query: 123 NTVVLHPNQTELISGDQNGNIRVW 146
+ L PN +++S ++ +R+W
Sbjct: 229 YCIKLLPNG-DIVSCGEDRTVRIW 251
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/58 (17%), Positives = 27/58 (46%)
Query: 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLF 61
P+ + + D+T++ W ++G + I P + ++ N + + + +R+F
Sbjct: 235 PNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIF 292
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 93 MYSGSEDGTVKIWDLRA---PVCQME---YESRAAVNTVVLHP--NQTELI--SGDQNGN 142
+ +GS DGTVK+WD R PV ME E++ TV NQ E + +G NG+
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 143 IRVWDLTANSCSCELGLQYGLRTFLFYHQDMT 174
I+++DL + E ++ G+ + F +D++
Sbjct: 192 IKLFDLRNMALRWETNIKNGVCSLEFDRKDIS 223
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 77 HTNNVMAVGFQC-DGNWMYSGSEDGTVKIWD---------LRAPVCQMEYESRAAVNTVV 126
HT V+ + + + N + SGSED TV +W+ LR PV +E ++ V V
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK-RVGIVA 138
Query: 127 LHPN-QTELISGDQNGNIRVWDLTANSCSCELG 158
HP Q L+S + I VWD+ + LG
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLG 171
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYP----DSQVNRLEI-----TPNKHYLAAAGNPH 57
++A+ S D T+ WE G ++ P + R+ I T L+A +
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR 108
I ++DV + + + D H + + +V + DG + + D V++ + R
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.9 bits (89), Expect = 0.001, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA----PVCQMEYESRAAVNTVVLH 128
S+ HT V V + D + +GS D +V +W++ P+ + ++VN+V+
Sbjct: 531 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590
Query: 129 PNQTELISGDQNGNIRVWDL 148
N+T ++S Q+ NI+ W++
Sbjct: 591 -NETTIVSAGQDSNIKFWNV 609
Score = 34.3 bits (77), Expect = 0.040, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTI----QYPDSQVNRLEITPNKHYLAAAGNPHIRLFDV 63
+A+AS DKTIK W + + +TI + D Q+ + ++A G +
Sbjct: 254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF-------I 306
Query: 64 NSSSPQPVMSYDQ----HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
N +P+ + S DQ H + A+ DG ++S +G + WD+
Sbjct: 307 NFVNPE-LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSS 66
+ + S D T+ +E + T V+ + P+ A+ G+ I L++
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 67 SPQPVMSYDQ-----HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
+ V D H+ +V + + DG + S S D T+KIW++
Sbjct: 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 136 SGDQNGNIRVWDLTANS 152
SGD +GN+R+WD T +
Sbjct: 76 SGDVHGNVRIWDTTQTT 92
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 7/152 (4%)
Query: 25 GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD--QHTNNVM 82
G C +Q ++ V L + L A+ + + L++++ + V + +H + V
Sbjct: 73 GFCSAGVQT-EAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS 131
Query: 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNTVVLHPNQ-TELISGDQN 140
V G SGS+D +K+WDL V Y + AA V V P++ + +S ++
Sbjct: 132 TVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED 191
Query: 141 GNIRVWDLTANSCSCELGLQYG--LRTFLFYH 170
I +WD + ++G L T L +H
Sbjct: 192 NRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 73 SYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRAPVCQMEYESRAA---VNTVVLH 128
SY H V V + ++ S SED + +WD R P + A ++ H
Sbjct: 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223
Query: 129 PNQTEL-ISGDQNGNIRVWDLTANSC 153
P Q+E+ + GD+NG + + D + SC
Sbjct: 224 PQQSEVFVFGDENGTVSLVDTKSTSC 249
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 27 CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD--QHTNNVMAV 84
C +Q ++ V + K L A+ + + L+++ V + +H + V +
Sbjct: 87 CTAGVQ-TEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL 145
Query: 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA-VNTVVLHPNQ-TELISGDQNGN 142
DG SG +D +VK+WDL Y + ++ VN V P + T +S ++G
Sbjct: 146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205
Query: 143 IRVWD 147
I +WD
Sbjct: 206 ILLWD 210
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN--WMYSGSEDGTVKIWDLR--APVCQ 113
++++D+ S + SY+ H++ V V C G S EDG + +WD R P +
Sbjct: 163 VKVWDL--SQKAVLKSYNAHSSEVNCVA-ACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219
Query: 114 MEYESRAAVNT-VVLHPNQTELIS-GDQNGNIRV 145
+++ + + T V HP + + + GD+ GN+ +
Sbjct: 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 97 SEDGTVKIWDLRAPVCQM-----EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149
S+ G V++W++ + +YE V T+ + + T+ +SG ++ +++VWDL+
Sbjct: 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 46 NKHYLAAAGNP-HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKI 104
N+H L++ I DV ++ Q + + H++ V + ++ DG + SG D V+I
Sbjct: 185 NRHVLSSGSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI 243
Query: 105 WDLRAPVCQM-EYESRAAVNTVVLHPNQTELIS---GDQNGNIRVWD 147
WD R+ + + + AAV V P Q+ L++ G + I W+
Sbjct: 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 5 SVILATA--SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYLAAAGNP--HIR 59
S +LAT + DK I FW A +G T+ SQV L +P +K ++ G P ++
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330
Query: 60 LFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
++ +SS + H V+ DG + + + D +K W
Sbjct: 331 IWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 77 HTNNVMAVGFQC--DGNWMYSGSEDGTVKIWD---------LRAPVCQMEYESRAAVNTV 125
HT V+ + + C + N + SGSED TV +W+ LR PV +E ++ V V
Sbjct: 80 HTAPVLDIAW-CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK-RVGIV 137
Query: 126 VLHPN-QTELISGDQNGNIRVWDLTANSCSCELG 158
HP Q L+S + I VWD+ + LG
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYP----DSQVNRLEI-----TPNKHYLAAAGNPH 57
++A+ S D T+ WE G ++ P + R+ I T L+A +
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR 108
I ++DV + + + D H + + +V + DG + + D V++ + R
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 8 LATASYDKTIKFWEAKSG-RCYRTIQYPDSQVNRLEITPNK--HYL------AAAGNPHI 58
L +AS D TI W+ + + +R I + + + H L + A + +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 59 RLFDV-NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRAPVCQME- 115
++D N+++ +P + D HT V + F ++ +GS D TV +WDLR ++
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 116 YES-RAAVNTVVLHP-NQTELISGDQNGNIRVWDLT 149
+ES + + V P N+T L S + + VWDL+
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLF---- 61
ILAT S DKT+ W+ ++ + + + ++ +++ +P+ + A+ RL
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 62 ----------DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDL 107
D P+ + + HT + + + W+ S SED +++W +
Sbjct: 354 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 8 LATASYDKTIKFWEAKSG-RCYRTIQYPDSQVNRLEITPNK--HYL------AAAGNPHI 58
L +AS D TI W+ + + +R I + + + H L + A + +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 59 RLFDV-NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRAPVCQME- 115
++D N+++ +P + D HT V + F ++ +GS D TV +WDLR ++
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 116 YES-RAAVNTVVLHP-NQTELISGDQNGNIRVWDLT 149
+ES + + V P N+T L S + + VWDL+
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLF---- 61
ILAT S DKT+ W+ ++ + + + ++ +++ +P+ + A+ RL
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 62 ----------DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDL 107
D P+ + + HT + + + W+ S SED +++W +
Sbjct: 352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 8 LATASYDKTIKFWEAKSG-RCYRTIQYPDSQVNRLEITPNK--HYL------AAAGNPHI 58
L +AS D TI W+ + + +R I + + + H L + A + +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 59 RLFDV-NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRAPVCQME- 115
++D N+++ +P + D HT V + F ++ +GS D TV +WDLR ++
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 116 YES-RAAVNTVVLHP-NQTELISGDQNGNIRVWDLT 149
+ES + + V P N+T L S + + VWDL+
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLF---- 61
ILAT S DKT+ W+ ++ + + + ++ +++ +P+ + A+ RL
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 62 ----------DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRAP 110
D P+ + + HT + + + W+ S SED +++W +
Sbjct: 356 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415
Query: 111 V 111
V
Sbjct: 416 V 416
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-----AGNP-HIRLFDV 63
T S D +IK W+ +G+C T + P V R+E +P +Y A NP I ++++
Sbjct: 91 TGSADYSIKLWDVSNGQCVATWKSP-VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI 149
Query: 64 NSSSP---------QPVMSYDQHT--NNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107
S +P+ H + G+ G ++ +G +DG + +D+
Sbjct: 150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDV 204
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL 134
D HT + ++ C + +GS D ++K+WD+ C ++S V V P
Sbjct: 71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF 130
Query: 135 ISGDQN-----GNIRVWDLTANSCSCEL 157
++ N G+I ++++ +S + EL
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHEL 158
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 44 TPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVK 103
T K+ +A + I +DV S++ + V S D H ++ + F D + + S D
Sbjct: 185 TKGKYIIAGHKDGKISKYDV-SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSF 243
Query: 104 IWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ D+ +YE+ +NT V+ P + +I G G D+T S
Sbjct: 244 LVDVSTLQVLKKYETDCPLNTAVITPLKEFIILG---GGQEAKDVTTTSA 290
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 77 HTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLR------APVCQMEYESRAAVNTVVLHP 129
H V F +W M + S D TVK+WDLR + + +M +E VN +P
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEK--PVNAAYFNP 259
Query: 130 -NQTELISGDQNGNIRVW 146
+ T+L++ DQ IRV+
Sbjct: 260 TDSTKLLTTDQRNEIRVY 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 77 HTNNVMAVGFQCDGNW-MYSGSEDGTVKIWDLR------APVCQMEYESRAAVNTVVLHP 129
H V F +W M + S D TVK+WDLR + + +M +E VN +P
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEK--PVNAAYFNP 260
Query: 130 -NQTELISGDQNGNIRVW 146
+ T+L++ DQ IRV+
Sbjct: 261 TDSTKLLTTDQRNEIRVY 278
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 49 YLAAAGNPHIRLFDVNSS-SPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWD 106
+ + A + + ++D S+ + +P S D HT V + F ++ +GS D TV +WD
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 107 LRAPVCQME-YES-RAAVNTVVLHP-NQTELISGDQNGNIRVWDLT 149
LR ++ +ES + + V P N+T L S + + VWDL+
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL----- 60
ILAT S DKT+ W+ ++ + + + ++ +++ +P+ + A+ RL
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 61 ---------FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDL 107
D P+ + + HT + + + W+ S SED +++W +
Sbjct: 348 SKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 49 YLAAAGNPHIRLFDVNS-SSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWD 106
+ + A + + ++D S ++ +P D HT V + F ++ +GS D TV +WD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 107 LRAPVCQME-YES-RAAVNTVVLHP-NQTELISGDQNGNIRVWDLT 149
LR ++ +ES + + V P N+T L S + + VWDL+
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL----- 60
ILAT S DKT+ W+ ++ + T + ++ ++ +P+ + A+ RL
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 61 ---------FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIW 105
D P+ + + HT + + + W+ S SED +IW
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 49 YLAAAGNPHIRLFDVNS-SSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWD 106
+ + A + + ++D S ++ +P D HT V + F ++ +GS D TV +WD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 107 LRAPVCQME-YES-RAAVNTVVLHP-NQTELISGDQNGNIRVWDLT 149
LR ++ +ES + + V P N+T L S + + VWDL+
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL----- 60
ILAT S DKT+ W+ ++ + T + ++ ++ +P+ + A+ RL
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 61 ---------FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDL 107
D P+ + + HT + + + W+ S SED ++IW +
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.021, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 68 PQPV--------MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR 119
PQP +SYD TN A+ + C + +DG K+ PV Q
Sbjct: 12 PQPSTQRNFTTHLSYDPTTN---AIAYPCGKSAFVRCLDDGDSKV----PPVVQFTGHGS 64
Query: 120 AAVNTVVLHP--NQTELISGDQNGNIRVWDLT 149
+ V TV P L SGD++G + VW T
Sbjct: 65 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 96
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
V +SP +S Q N +AVG + +GN + +DL+ P+ RA
Sbjct: 443 VRLNSPGSAVSLSQ---NYVAVGLE-EGNTIQVFKLSDLEVSFDLKTPL-------RAKP 491
Query: 123 NTVVLHPNQTELISGDQNGNIRVWDLTA 150
+ + + P++T + +GD G I ++DL +
Sbjct: 492 SYISISPSETYIAAGDVXGKILLYDLQS 519
Score = 26.9 bits (58), Expect = 5.8, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS 67
AT D TI+ W+ + +C + Q+ ++ + A GN I ++ +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG-----VVATGNGRIISLSLDGTL 321
Query: 68 PQPVMSYDQ-------HTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ +D+ H + A+ N + SGS DG + W
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIXEW 362
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 31/133 (23%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPD------------------------SQVNRLEI 43
+ +AS D TI+ WE +G T + S+ N LE
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 44 -TPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT---NNVMAVGFQCDGNWMYSGSED 99
T K+ +A + I + +V S Q + + T N++ G + N++Y+G E+
Sbjct: 253 GTYGKYVIAGHVSGVITVHNV-FSKEQTIQLPSKFTCSCNSLTVDG--NNANYIYAGYEN 309
Query: 100 GTVKIWDLRAPVC 112
G + WDLR+P C
Sbjct: 310 GMLAQWDLRSPEC 322
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 47 KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ-HTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ ++ I++ D N + + + DQ H + + + F G + S S+D +KIW
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREI---DQAHVSEITKLKFFPSGEALISSSQDMQLKIW 163
Query: 106 DLRA---PVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147
++ P + + RA V + + ++S +G IR+W+
Sbjct: 164 SVKDGSNPRTLIGH--RATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 31/133 (23%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPD------------------------SQVNRLEI 43
+ +AS D TI+ WE +G T + S+ N LE
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 44 -TPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT---NNVMAVGFQCDGNWMYSGSED 99
T K+ +A + I + +V S Q + + T N++ G + N++Y+G E+
Sbjct: 256 GTYGKYVIAGHVSGVITVHNV-FSKEQTIQLPSKFTCSCNSLTVDG--NNANYIYAGYEN 312
Query: 100 GTVKIWDLRAPVC 112
G + WDLR+P C
Sbjct: 313 GMLAQWDLRSPEC 325
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 47 KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ-HTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ ++ I++ D N + + + DQ H + + + F G + S S+D +KIW
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREI---DQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166
Query: 106 DLRA---PVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147
++ P + + RA V + + ++S +G IR+W+
Sbjct: 167 SVKDGSNPRTLIGH--RATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT 132
S + TN V + + DGN + +G E+G +++W+ + + RA + +V + + T
Sbjct: 103 SSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGT 162
Query: 133 ELISGDQNGNIRVWDLTANSC 153
+IS D +W++ + +
Sbjct: 163 HIISMDVENVTILWNVISGTV 183
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 37/98 (37%)
Query: 56 PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115
P +F + P H + + F + S S+DGT++IW Q
Sbjct: 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC 284
Query: 116 YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153
+ + ++IS +G++R+W L N+
Sbjct: 285 FYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTL 322
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 69/185 (37%), Gaps = 29/185 (15%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQ----VNRLEITPNKHYLAAAGNPHIRLFDV 63
+ T D I + A RTI DS V L TP + + G I F
Sbjct: 163 IVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLR-TPEILTVNSIGQLKIWDFRQ 221
Query: 64 NSSSPQPVMSY----------DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR---AP 110
+ P ++S D+H N V +G +DG + IWD+R P
Sbjct: 222 QGNEPSQILSLTGDRVPLHCVDRHPNQQHVVA---------TGGQDGMLSIWDVRQGTMP 272
Query: 111 VCQMEYESRAAVNTVVLHPNQTE-LISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFY 169
V ++ A + V HP+ E L + ++G++ WD + + G R+ F
Sbjct: 273 VSLLKAH-EAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFL 331
Query: 170 HQDMT 174
++
Sbjct: 332 SHSIS 336
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 72 MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ 131
+SYD TN A+ + C + +DG K+ PV Q + V TV P +
Sbjct: 24 LSYDPTTN---AIAYPCGKSAFVRCLDDGDSKV----PPVVQFTGHGSSVVTTVKFSPIK 76
Query: 132 TE--LISGDQNGNIRVWDLT 149
L SGD++G + VW T
Sbjct: 77 GSQYLCSGDESGKVIVWGWT 96
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
V +SP +S Q N +AVG + +GN + +DL+ P+ RA
Sbjct: 443 VRLNSPGSAVSLSQ---NYVAVGLE-EGNTIQVFKLSDLEVSFDLKTPL-------RAKP 491
Query: 123 NTVVLHPNQTELISGDQNGNIRVWDL 148
+ + + P++T + +GD G I ++DL
Sbjct: 492 SYISISPSETYIAAGDVMGKILLYDL 517
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS 67
AT D TI+ W+ + +C + Q+ ++ + A GN I ++ +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG-----VVATGNGRIISLSLDGTL 321
Query: 68 PQPVMSYDQ-------HTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+ +D+ H + A+ N + SGS DG + W
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEW 362
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 12 SYDKTIKFWEAKSGRCYRTIQYPDSQVNRL 41
S ++ I WEAKSG ++ + PD Q+ RL
Sbjct: 223 SQNELISLWEAKSGLSFKKVHMPDEQLVRL 252
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 93 MYSGSEDGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150
+ S +D T+ IW L P+ S ++ N +LI G++NGNIR++D T
Sbjct: 160 IASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 219
Query: 151 N 151
N
Sbjct: 220 N 220
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 93 MYSGSEDGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150
+ S +D T+ IW L P+ S ++ N +LI G++NGNIR++D T
Sbjct: 159 IASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 218
Query: 151 N 151
N
Sbjct: 219 N 219
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 92 WMYSGSEDGTVKIWDLRAPVC------QMEYESRAAVNTVVLHPNQTELISGDQNGNIRV 145
++ +GS+ G +KIW+L+ + + Y+ + V + + PN ++G I V
Sbjct: 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIV 137
Query: 146 WDL 148
+
Sbjct: 138 LKV 140
>pdb|2VTW|A Chain A, Structure Of The C-Terminal Head Domain Of The Fowl
Adenovirus Type 1 Short Fibre
pdb|2VTW|B Chain B, Structure Of The C-Terminal Head Domain Of The Fowl
Adenovirus Type 1 Short Fibre
pdb|2VTW|C Chain C, Structure Of The C-Terminal Head Domain Of The Fowl
Adenovirus Type 1 Short Fibre
pdb|2VTW|D Chain D, Structure Of The C-Terminal Head Domain Of The Fowl
Adenovirus Type 1 Short Fibre
pdb|2VTW|E Chain E, Structure Of The C-Terminal Head Domain Of The Fowl
Adenovirus Type 1 Short Fibre
pdb|2VTW|F Chain F, Structure Of The C-Terminal Head Domain Of The Fowl
Adenovirus Type 1 Short Fibre
Length = 205
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
PV++ + T N++A FQC +++ + +GTV I PV +RA V
Sbjct: 155 PVLATNNTTYNLIAFTFQCASAGLFNPTVNGTVAI----GPVVHTCPAARAPV 203
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 7 ILATASYDKTIKFWE 21
I+A+ASYDKT+K WE
Sbjct: 71 IIASASYDKTVKLWE 85
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 47 KHYLAAAGNPHIRLF--DVNSSSPQPVMSYDQHTNNVMAVGFQCD--GNWMYSGSEDGTV 102
+H + + HI++F D ++S+ + S+ H ++++A+ + G + S S D TV
Sbjct: 22 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 81
Query: 103 KIWD 106
K+W+
Sbjct: 82 KLWE 85
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 74 YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+D H V +V + G + S +DG V++W
Sbjct: 300 HDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 7 ILATASYDKTIKFWE 21
I+A+ASYDKT+K WE
Sbjct: 73 IIASASYDKTVKLWE 87
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 47 KHYLAAAGNPHIRLF--DVNSSSPQPVMSYDQHTNNVMAVGFQCD--GNWMYSGSEDGTV 102
+H + + HI++F D ++S+ + S+ H ++++A+ + G + S S D TV
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83
Query: 103 KIWD 106
K+W+
Sbjct: 84 KLWE 87
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 74 YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+D H V +V + G + S +DG V++W
Sbjct: 302 HDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 7 ILATASYDKTIKFWE 21
I+A+ASYDKT+K WE
Sbjct: 73 IIASASYDKTVKLWE 87
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 47 KHYLAAAGNPHIRLF--DVNSSSPQPVMSYDQHTNNVMAVGFQCD--GNWMYSGSEDGTV 102
+H + + HI++F D ++S+ + S+ H ++++A+ + G + S S D TV
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83
Query: 103 KIWD 106
K+W+
Sbjct: 84 KLWE 87
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 74 YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIW 105
+D H V +V + G + S +DG V++W
Sbjct: 302 HDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
V + S Q + H++ VM++ F G + S DG ++ WD++ ++ +
Sbjct: 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK---------TKERI 326
Query: 123 NTVVLHPNQTE----LISGDQNGN 142
T+ +H + E +++ D++G+
Sbjct: 327 TTLNMHCDDIEIEEDILAVDEHGD 350
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 63 VNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV 122
V + S Q + H++ VM++ F G + S DG ++ WD++ ++ +
Sbjct: 286 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK---------TKERI 336
Query: 123 NTVVLHPNQTE----LISGDQNGN 142
T+ +H + E +++ D++G+
Sbjct: 337 TTLNMHCDDIEIEEDILAVDEHGD 360
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKHYLAAA 53
ILA+ SYD+ + W ++G ++ ++ DS VN + P+ + L A
Sbjct: 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILA 121
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKH---YLAAAGNPHIRLF 61
ILA+ SYD + W+ ++GR + + + VN ++ P+++ L A+ + + +
Sbjct: 69 ILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVV 128
Query: 62 DVNSSSPQPVMSYDQHTNNVMAVGF-----QCDGNW--------MYSGSEDGTVKIW 105
+ + + D H V + + + DG +G D VKIW
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKH---YLAAAGNPHIRLF 61
ILA+ SYD + W+ ++GR + + + VN ++ P+++ L A+ + + +
Sbjct: 69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV 128
Query: 62 DVNSSSPQPVMSYDQHTNNVMAVGF-----QCDGNW--------MYSGSEDGTVKIW 105
+ + + D H V + + + DG +G D VKIW
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKH---YLAAAGNPHIRLF 61
ILA+ SYD + W+ ++GR + + + VN ++ P+++ L A+ + + +
Sbjct: 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 130
Query: 62 DVNSSSPQPVMSYDQHTNNVMAVGF-----QCDGNW--------MYSGSEDGTVKIW 105
+ + + D H V + + + DG +G D VKIW
Sbjct: 131 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKH---YLAAAGNPHIRLF 61
ILA+ SYD + W+ ++GR + + + VN ++ P+++ L A+ + + +
Sbjct: 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 128
Query: 62 DVNSSSPQPVMSYDQHTNNVMAVGF-----QCDGNW--------MYSGSEDGTVKIW 105
+ + + D H V + + + DG +G D VKIW
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 7 ILATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKH---YLAAAGNPHIRLF 61
ILA+ SYD + W+ ++GR + + + VN ++ P+++ L A+ + + +
Sbjct: 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 128
Query: 62 DVNSSSPQPVMSYDQHTNNVMAVGF-----QCDGNW--------MYSGSEDGTVKIW 105
+ + + D H V + + + DG +G D VKIW
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|1VPR|A Chain A, Crystal Structure Of A Luciferase Domain From The
Dinoflagellate Lingulodinium Polyedrum
Length = 374
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 5 SVILATASYDKTIKFWEAKSGRCYR 29
V + Y K FWE +SGRC+R
Sbjct: 250 GVWVLPEEYRKIGFFWEXESGRCFR 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,371,786
Number of Sequences: 62578
Number of extensions: 205578
Number of successful extensions: 1178
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 398
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)