Query 042260
Match_columns 174
No_of_seqs 120 out of 1278
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0315 G-protein beta subunit 100.0 3E-35 6.5E-40 206.8 18.4 169 4-172 9-178 (311)
2 KOG0272 U4/U6 small nuclear ri 100.0 7.8E-30 1.7E-34 190.3 10.9 165 5-171 231-397 (459)
3 KOG0279 G protein beta subunit 100.0 2.4E-27 5.1E-32 169.2 19.1 164 3-169 73-242 (315)
4 KOG0263 Transcription initiati 100.0 1.7E-27 3.7E-32 188.7 16.9 154 3-158 461-616 (707)
5 KOG0272 U4/U6 small nuclear ri 100.0 3.9E-28 8.3E-33 181.2 12.3 158 3-162 271-431 (459)
6 KOG0285 Pleiotropic regulator 100.0 3.9E-27 8.5E-32 173.2 16.5 167 4-172 162-330 (460)
7 KOG0276 Vesicle coat complex C 99.9 1.6E-26 3.4E-31 180.0 16.2 169 5-174 67-240 (794)
8 KOG0279 G protein beta subunit 99.9 2.7E-25 5.8E-30 158.8 18.7 167 4-172 27-203 (315)
9 KOG0286 G-protein beta subunit 99.9 3.6E-25 7.8E-30 159.1 18.2 153 3-157 65-267 (343)
10 KOG0266 WD40 repeat-containing 99.9 6.7E-25 1.5E-29 173.5 21.1 154 3-158 213-373 (456)
11 KOG0263 Transcription initiati 99.9 6.6E-26 1.4E-30 179.7 14.6 150 3-154 503-654 (707)
12 KOG0286 G-protein beta subunit 99.9 2.5E-24 5.4E-29 154.8 19.0 164 7-172 158-326 (343)
13 KOG0266 WD40 repeat-containing 99.9 2E-24 4.4E-29 170.8 20.3 168 3-172 169-345 (456)
14 KOG0315 G-protein beta subunit 99.9 2.7E-24 5.8E-29 151.8 16.6 155 3-158 93-297 (311)
15 KOG0271 Notchless-like WD40 re 99.9 1.5E-24 3.3E-29 160.8 15.9 158 4-163 126-290 (480)
16 KOG0271 Notchless-like WD40 re 99.9 1.1E-24 2.5E-29 161.5 15.0 160 4-163 216-454 (480)
17 KOG0295 WD40 repeat-containing 99.9 8.8E-24 1.9E-28 155.6 17.7 166 5-172 205-387 (406)
18 KOG0316 Conserved WD40 repeat- 99.9 2.4E-23 5.2E-28 146.1 16.6 168 4-174 70-283 (307)
19 PTZ00421 coronin; Provisional 99.9 1.2E-22 2.5E-27 161.3 22.6 148 4-153 87-249 (493)
20 KOG0319 WD40-repeat-containing 99.9 1.5E-23 3.2E-28 165.7 14.2 152 5-158 424-586 (775)
21 KOG0291 WD40-repeat-containing 99.9 8.9E-23 1.9E-27 161.9 17.2 152 3-154 360-555 (893)
22 PTZ00420 coronin; Provisional 99.9 4E-22 8.7E-27 159.6 21.1 151 10-160 49-208 (568)
23 KOG0319 WD40-repeat-containing 99.9 7.8E-23 1.7E-27 161.7 16.0 147 2-150 472-620 (775)
24 KOG0302 Ribosome Assembly prot 99.9 6.5E-23 1.4E-27 151.8 14.2 166 7-172 226-407 (440)
25 KOG0277 Peroxisomal targeting 99.9 7.1E-23 1.5E-27 145.0 13.5 145 5-151 117-267 (311)
26 KOG0277 Peroxisomal targeting 99.9 3.3E-22 7.1E-27 141.6 15.5 153 3-157 71-230 (311)
27 KOG0284 Polyadenylation factor 99.9 4.2E-23 9E-28 154.0 11.1 149 3-154 191-342 (464)
28 KOG0284 Polyadenylation factor 99.9 1.5E-23 3.3E-28 156.3 8.8 153 3-158 148-303 (464)
29 KOG0281 Beta-TrCP (transducin 99.9 1.5E-23 3.3E-28 154.2 8.5 155 4-163 246-402 (499)
30 KOG0316 Conserved WD40 repeat- 99.9 4.2E-22 9.1E-27 139.9 15.2 150 4-157 28-181 (307)
31 KOG0282 mRNA splicing factor [ 99.9 1.6E-22 3.6E-27 153.4 14.2 168 3-173 268-486 (503)
32 KOG0265 U5 snRNP-specific prot 99.9 5.7E-22 1.2E-26 143.0 16.1 166 4-171 58-226 (338)
33 PTZ00421 coronin; Provisional 99.9 6E-21 1.3E-25 151.6 22.7 153 6-158 33-207 (493)
34 KOG0295 WD40 repeat-containing 99.9 6.8E-22 1.5E-26 145.7 15.5 145 2-148 244-405 (406)
35 KOG0275 Conserved WD40 repeat- 99.9 3.5E-23 7.7E-28 151.3 7.3 154 3-158 223-387 (508)
36 cd00200 WD40 WD40 domain, foun 99.9 1.5E-20 3.3E-25 137.4 21.3 153 4-158 62-216 (289)
37 cd00200 WD40 WD40 domain, foun 99.9 1.9E-20 4.1E-25 136.9 21.9 153 5-159 105-259 (289)
38 PTZ00420 coronin; Provisional 99.9 1.5E-20 3.2E-25 150.7 22.6 150 5-157 87-257 (568)
39 KOG0273 Beta-transducin family 99.9 1.4E-21 3.1E-26 148.0 15.8 143 5-149 371-523 (524)
40 KOG0276 Vesicle coat complex C 99.9 6.4E-22 1.4E-26 154.5 14.2 148 5-154 109-262 (794)
41 KOG0283 WD40 repeat-containing 99.9 7.5E-22 1.6E-26 157.8 13.8 151 3-156 277-488 (712)
42 KOG0274 Cdc4 and related F-box 99.9 2.8E-21 6.1E-26 154.2 17.0 151 4-160 260-412 (537)
43 KOG0273 Beta-transducin family 99.9 7.1E-21 1.5E-25 144.3 18.1 165 4-170 287-462 (524)
44 KOG0278 Serine/threonine kinas 99.9 5.9E-21 1.3E-25 135.2 15.5 143 6-152 156-300 (334)
45 KOG0285 Pleiotropic regulator 99.9 2.8E-21 6E-26 142.6 13.9 156 5-163 205-362 (460)
46 PLN00181 protein SPA1-RELATED; 99.9 4.1E-20 8.9E-25 155.2 22.9 143 5-151 545-692 (793)
47 KOG0267 Microtubule severing p 99.9 1.3E-22 2.7E-27 160.3 7.3 151 5-157 82-234 (825)
48 KOG0282 mRNA splicing factor [ 99.9 5.2E-22 1.1E-26 150.7 10.3 146 4-152 226-375 (503)
49 KOG0264 Nucleosome remodeling 99.9 9.2E-21 2E-25 142.8 16.8 168 3-170 188-369 (422)
50 KOG0308 Conserved WD40 repeat- 99.9 4E-21 8.6E-26 150.5 14.9 156 3-158 83-252 (735)
51 KOG0292 Vesicle coat complex C 99.9 1.2E-20 2.5E-25 152.3 17.7 167 7-173 107-304 (1202)
52 KOG0310 Conserved WD40 repeat- 99.9 1.7E-20 3.7E-25 142.6 17.4 151 2-154 163-314 (487)
53 KOG0645 WD40 repeat protein [G 99.9 3.9E-20 8.4E-25 132.1 17.9 154 5-158 27-192 (312)
54 KOG0265 U5 snRNP-specific prot 99.9 1.7E-20 3.7E-25 135.5 15.9 165 5-172 145-319 (338)
55 KOG0281 Beta-TrCP (transducin 99.9 7.7E-22 1.7E-26 145.3 8.8 145 7-158 209-357 (499)
56 KOG0269 WD40 repeat-containing 99.9 2.3E-21 5E-26 154.2 12.0 147 5-152 146-299 (839)
57 KOG0310 Conserved WD40 repeat- 99.9 4.1E-20 8.8E-25 140.6 18.1 166 2-170 120-289 (487)
58 KOG0640 mRNA cleavage stimulat 99.9 3.3E-21 7.2E-26 140.1 10.8 154 5-158 184-344 (430)
59 KOG0264 Nucleosome remodeling 99.9 3.1E-20 6.6E-25 140.0 15.7 168 1-168 133-323 (422)
60 PLN00181 protein SPA1-RELATED; 99.9 2.5E-19 5.4E-24 150.5 22.7 147 3-152 493-651 (793)
61 KOG0318 WD40 repeat stress pro 99.9 7.4E-20 1.6E-24 140.5 17.7 160 3-162 69-278 (603)
62 KOG0292 Vesicle coat complex C 99.9 9E-21 2E-25 153.0 13.1 144 5-150 21-166 (1202)
63 KOG0274 Cdc4 and related F-box 99.9 2E-20 4.3E-25 149.3 14.9 150 5-160 301-452 (537)
64 KOG0647 mRNA export protein (c 99.9 4.4E-20 9.5E-25 133.5 15.2 146 3-153 38-188 (347)
65 KOG0269 WD40 repeat-containing 99.9 3.7E-21 8E-26 153.0 10.4 146 5-152 100-253 (839)
66 KOG0305 Anaphase promoting com 99.9 2.7E-20 5.8E-25 144.9 14.9 160 3-164 227-391 (484)
67 KOG1407 WD40 repeat protein [F 99.8 1.7E-19 3.6E-24 128.4 16.8 154 4-158 76-270 (313)
68 KOG1446 Histone H3 (Lys4) meth 99.8 3.6E-19 7.9E-24 129.2 18.6 153 5-159 112-272 (311)
69 KOG0291 WD40-repeat-containing 99.8 2.5E-19 5.5E-24 142.5 19.0 154 5-160 277-433 (893)
70 KOG0289 mRNA splicing factor [ 99.8 1.7E-19 3.7E-24 135.8 16.9 149 4-154 314-467 (506)
71 KOG0643 Translation initiation 99.8 3.2E-19 7E-24 127.3 17.2 150 4-154 63-225 (327)
72 KOG0296 Angio-associated migra 99.8 6.6E-19 1.4E-23 130.1 18.8 166 4-172 117-380 (399)
73 KOG0300 WD40 repeat-containing 99.8 9.2E-20 2E-24 133.2 13.9 146 5-152 284-431 (481)
74 KOG4283 Transcription-coupled 99.8 8.6E-20 1.9E-24 132.0 13.0 148 4-154 113-281 (397)
75 KOG1036 Mitotic spindle checkp 99.8 2.9E-19 6.2E-24 129.5 15.5 146 5-156 25-170 (323)
76 KOG0308 Conserved WD40 repeat- 99.8 3.6E-19 7.8E-24 139.6 16.0 148 2-151 127-287 (735)
77 KOG0313 Microtubule binding pr 99.8 5E-19 1.1E-23 131.3 15.7 154 3-159 203-387 (423)
78 KOG0301 Phospholipase A2-activ 99.8 1.8E-19 4E-24 142.0 13.8 147 6-161 113-259 (745)
79 KOG0647 mRNA export protein (c 99.8 2.2E-19 4.7E-24 130.0 13.1 135 33-168 25-164 (347)
80 KOG0289 mRNA splicing factor [ 99.8 6.5E-19 1.4E-23 132.7 16.0 149 5-153 273-423 (506)
81 KOG0641 WD40 repeat protein [G 99.8 3.9E-18 8.5E-23 119.7 18.7 158 3-161 99-273 (350)
82 KOG0283 WD40 repeat-containing 99.8 6E-19 1.3E-23 141.3 15.6 149 5-157 380-540 (712)
83 KOG0646 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 131.3 15.9 161 3-163 91-321 (476)
84 KOG0772 Uncharacterized conser 99.8 5.6E-19 1.2E-23 135.6 13.5 154 5-158 281-454 (641)
85 KOG0296 Angio-associated migra 99.8 6.2E-18 1.4E-22 125.0 18.4 153 4-158 75-229 (399)
86 KOG0640 mRNA cleavage stimulat 99.8 6.8E-19 1.5E-23 128.2 13.1 156 3-158 122-300 (430)
87 KOG0645 WD40 repeat protein [G 99.8 7.2E-18 1.6E-22 120.5 18.0 147 3-149 71-225 (312)
88 KOG0267 Microtubule severing p 99.8 6.3E-20 1.4E-24 145.3 8.1 166 4-171 39-206 (825)
89 KOG0288 WD40 repeat protein Ti 99.8 2.6E-20 5.7E-25 139.3 5.5 157 5-165 187-346 (459)
90 KOG0318 WD40 repeat stress pro 99.8 6.3E-18 1.4E-22 130.0 18.0 148 7-154 162-355 (603)
91 KOG0313 Microtubule binding pr 99.8 2.2E-18 4.8E-23 127.9 14.5 148 4-152 158-333 (423)
92 KOG1446 Histone H3 (Lys4) meth 99.8 9.7E-18 2.1E-22 121.9 16.9 145 4-151 25-172 (311)
93 KOG0772 Uncharacterized conser 99.8 1.5E-18 3.3E-23 133.3 12.5 117 36-152 269-397 (641)
94 KOG0270 WD40 repeat-containing 99.8 9.3E-18 2E-22 126.7 15.8 146 4-151 255-406 (463)
95 KOG0301 Phospholipase A2-activ 99.8 5.8E-18 1.3E-22 133.7 15.2 144 5-156 151-295 (745)
96 KOG0302 Ribosome Assembly prot 99.8 8.3E-18 1.8E-22 124.9 14.6 168 4-171 164-357 (440)
97 KOG0288 WD40 repeat protein Ti 99.8 1.5E-17 3.2E-22 124.8 15.7 157 4-163 230-431 (459)
98 KOG1407 WD40 repeat protein [F 99.8 1E-17 2.2E-22 119.3 13.9 164 4-170 31-241 (313)
99 KOG0294 WD40 repeat-containing 99.8 2.1E-17 4.6E-22 120.3 15.2 106 4-111 52-160 (362)
100 KOG1036 Mitotic spindle checkp 99.8 2.4E-17 5.2E-22 119.6 15.0 150 7-158 108-271 (323)
101 KOG0275 Conserved WD40 repeat- 99.8 1.1E-18 2.3E-23 128.0 7.7 145 4-150 274-424 (508)
102 KOG0305 Anaphase promoting com 99.8 5.3E-17 1.1E-21 126.7 16.5 166 5-172 270-442 (484)
103 KOG4283 Transcription-coupled 99.8 2.5E-17 5.5E-22 119.3 13.6 148 4-154 55-225 (397)
104 KOG0643 Translation initiation 99.8 2.8E-16 6E-21 112.4 18.3 149 3-154 20-182 (327)
105 KOG0268 Sof1-like rRNA process 99.8 3.5E-18 7.6E-23 126.4 8.8 148 5-154 200-350 (433)
106 KOG1332 Vesicle coat complex C 99.8 3.4E-17 7.3E-22 115.8 12.8 150 5-154 23-198 (299)
107 KOG0299 U3 snoRNP-associated p 99.8 2.6E-17 5.7E-22 124.7 13.0 153 3-158 212-365 (479)
108 KOG0306 WD40-repeat-containing 99.8 5.2E-17 1.1E-21 129.5 15.0 150 3-154 518-669 (888)
109 KOG0641 WD40 repeat protein [G 99.7 2.8E-16 6.1E-21 110.4 16.7 143 5-149 194-349 (350)
110 KOG0306 WD40-repeat-containing 99.7 7.7E-17 1.7E-21 128.5 15.1 140 5-148 77-218 (888)
111 KOG0278 Serine/threonine kinas 99.7 3.2E-18 6.9E-23 121.4 6.1 164 3-169 27-193 (334)
112 KOG0973 Histone transcription 99.7 1.1E-16 2.4E-21 131.4 15.8 158 4-161 24-213 (942)
113 KOG0293 WD40 repeat-containing 99.7 1.9E-16 4E-21 119.1 15.3 151 3-154 234-389 (519)
114 KOG0300 WD40 repeat-containing 99.7 2.6E-17 5.5E-22 120.5 9.9 144 7-150 162-345 (481)
115 KOG0293 WD40 repeat-containing 99.7 7E-17 1.5E-21 121.4 11.7 147 2-151 363-515 (519)
116 KOG1188 WD40 repeat protein [G 99.7 2E-16 4.3E-21 116.3 13.1 146 6-151 41-198 (376)
117 KOG0294 WD40 repeat-containing 99.7 6.5E-16 1.4E-20 112.7 14.8 159 7-170 99-259 (362)
118 KOG1539 WD repeat protein [Gen 99.7 2.1E-16 4.5E-21 127.2 13.1 142 5-149 505-648 (910)
119 KOG0299 U3 snoRNP-associated p 99.7 5.9E-16 1.3E-20 117.5 14.7 157 7-167 258-432 (479)
120 KOG0646 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 114.9 17.3 159 6-166 8-223 (476)
121 KOG1274 WD40 repeat protein [G 99.7 1.7E-15 3.6E-20 123.0 18.0 148 3-150 106-263 (933)
122 KOG1332 Vesicle coat complex C 99.7 1.6E-16 3.4E-21 112.4 10.5 153 4-156 69-248 (299)
123 KOG0268 Sof1-like rRNA process 99.7 1.8E-16 3.8E-21 117.5 10.2 146 7-153 81-263 (433)
124 KOG0321 WD40 repeat-containing 99.7 3.5E-16 7.5E-21 122.9 12.2 156 3-158 62-257 (720)
125 KOG0303 Actin-binding protein 99.7 9.5E-16 2.1E-20 114.7 13.5 144 6-152 95-252 (472)
126 KOG2048 WD40 repeat protein [G 99.7 5.6E-15 1.2E-19 116.7 17.7 162 5-167 80-252 (691)
127 KOG0639 Transducin-like enhanc 99.7 2.7E-16 5.8E-21 120.9 9.9 146 3-150 475-623 (705)
128 KOG2919 Guanine nucleotide-bin 99.7 2.5E-15 5.4E-20 110.2 14.3 169 4-173 122-352 (406)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3.1E-14 6.8E-19 106.1 20.6 147 6-156 2-152 (300)
130 KOG2096 WD40 repeat protein [G 99.7 4.4E-15 9.5E-20 108.8 15.3 168 2-171 196-383 (420)
131 KOG0322 G-protein beta subunit 99.7 8.8E-16 1.9E-20 109.7 11.2 144 6-149 166-323 (323)
132 KOG0973 Histone transcription 99.7 3.9E-15 8.5E-20 122.5 15.4 148 4-151 140-357 (942)
133 KOG2048 WD40 repeat protein [G 99.7 2.6E-14 5.7E-19 112.9 19.1 149 5-155 37-190 (691)
134 KOG4328 WD40 protein [Function 99.7 1.8E-15 3.9E-20 114.9 12.1 145 5-149 200-399 (498)
135 KOG0649 WD40 repeat protein [G 99.7 1.5E-14 3.2E-19 102.7 15.9 159 2-162 19-199 (325)
136 KOG0321 WD40 repeat-containing 99.7 4.3E-15 9.3E-20 116.8 14.5 150 3-152 110-304 (720)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 5.5E-14 1.2E-18 104.8 20.1 164 4-168 125-298 (300)
138 KOG4378 Nuclear protein COP1 [ 99.6 4.4E-15 9.6E-20 114.1 13.3 150 3-153 89-284 (673)
139 KOG0270 WD40 repeat-containing 99.6 4.4E-15 9.5E-20 112.4 12.8 162 4-167 191-379 (463)
140 KOG0639 Transducin-like enhanc 99.6 3.8E-15 8.2E-20 114.7 12.7 147 3-149 519-704 (705)
141 KOG0303 Actin-binding protein 99.6 7E-15 1.5E-19 110.2 12.0 128 30-157 76-211 (472)
142 KOG1034 Transcriptional repres 99.6 3.3E-15 7.2E-20 109.6 9.4 143 4-148 104-278 (385)
143 KOG1273 WD40 repeat protein [G 99.6 2.8E-14 6E-19 104.5 14.0 146 4-149 34-226 (405)
144 KOG0771 Prolactin regulatory e 99.6 1.9E-14 4.2E-19 108.2 12.4 169 4-172 155-335 (398)
145 KOG1274 WD40 repeat protein [G 99.6 9.3E-14 2E-18 113.1 16.5 152 3-157 23-176 (933)
146 KOG1408 WD40 repeat protein [F 99.6 3.9E-14 8.5E-19 113.1 14.0 169 3-172 469-694 (1080)
147 KOG2110 Uncharacterized conser 99.6 2.7E-13 5.8E-18 100.9 17.3 143 7-152 99-251 (391)
148 KOG0642 Cell-cycle nuclear pro 99.6 5E-14 1.1E-18 109.5 13.8 155 4-158 305-570 (577)
149 KOG2096 WD40 repeat protein [G 99.6 9.3E-14 2E-18 101.9 14.2 101 47-150 199-309 (420)
150 KOG1009 Chromatin assembly com 99.6 1.3E-14 2.7E-19 108.9 9.6 146 7-152 28-198 (434)
151 KOG1188 WD40 repeat protein [G 99.6 8.1E-14 1.7E-18 102.7 13.1 155 4-158 83-251 (376)
152 KOG2055 WD40 repeat protein [G 99.6 1.7E-13 3.6E-18 104.5 14.9 160 4-163 224-388 (514)
153 KOG0307 Vesicle coat complex C 99.6 1.1E-14 2.5E-19 120.5 9.3 167 6-172 81-265 (1049)
154 PF08662 eIF2A: Eukaryotic tra 99.6 9.3E-13 2E-17 93.3 17.8 135 16-157 38-186 (194)
155 KOG0307 Vesicle coat complex C 99.6 2.4E-14 5.2E-19 118.6 10.3 164 5-170 129-305 (1049)
156 KOG1539 WD repeat protein [Gen 99.6 1.5E-13 3.2E-18 111.1 13.8 168 2-173 457-629 (910)
157 KOG0290 Conserved WD40 repeat- 99.5 1.8E-13 3.9E-18 99.3 12.8 148 5-153 163-322 (364)
158 KOG0649 WD40 repeat protein [G 99.5 8.8E-13 1.9E-17 93.7 16.0 156 7-168 74-254 (325)
159 KOG3881 Uncharacterized conser 99.5 5.4E-13 1.2E-17 99.9 15.0 160 3-163 159-334 (412)
160 KOG1445 Tumor-specific antigen 99.5 4.3E-14 9.3E-19 111.7 9.7 142 6-150 641-799 (1012)
161 KOG1034 Transcriptional repres 99.5 1E-12 2.2E-17 96.7 14.8 147 4-153 54-215 (385)
162 COG2319 FOG: WD40 repeat [Gene 99.5 1.1E-11 2.3E-16 94.7 21.3 151 5-158 167-323 (466)
163 KOG1007 WD repeat protein TSSC 99.5 6.1E-13 1.3E-17 96.5 12.4 141 11-152 140-292 (370)
164 KOG1272 WD40-repeat-containing 99.5 5.5E-14 1.2E-18 107.3 7.3 140 6-149 222-362 (545)
165 KOG1445 Tumor-specific antigen 99.5 1.4E-13 3.1E-18 108.8 9.8 146 11-157 599-759 (1012)
166 KOG2445 Nuclear pore complex c 99.5 7.5E-13 1.6E-17 96.6 12.8 145 5-150 126-319 (361)
167 KOG1517 Guanine nucleotide bin 99.5 1.5E-12 3.2E-17 107.9 15.3 145 6-151 1178-1335(1387)
168 KOG1408 WD40 repeat protein [F 99.5 5.1E-13 1.1E-17 106.9 12.0 113 38-150 599-714 (1080)
169 KOG1524 WD40 repeat-containing 99.5 7.5E-13 1.6E-17 102.9 12.5 124 4-130 115-238 (737)
170 COG2319 FOG: WD40 repeat [Gene 99.5 2.1E-11 4.5E-16 93.1 19.4 144 7-153 125-275 (466)
171 KOG4328 WD40 protein [Function 99.5 2.7E-12 5.7E-17 97.9 13.7 165 7-171 293-474 (498)
172 KOG2394 WD40 protein DMR-N9 [G 99.5 1.3E-12 2.9E-17 101.4 12.1 124 3-128 230-383 (636)
173 KOG2110 Uncharacterized conser 99.5 4.5E-11 9.8E-16 89.2 19.6 163 6-173 57-230 (391)
174 KOG0650 WD40 repeat nucleolar 99.4 5.6E-12 1.2E-16 99.1 14.8 152 4-157 411-603 (733)
175 KOG2111 Uncharacterized conser 99.4 6.3E-11 1.4E-15 87.0 19.0 98 55-152 158-259 (346)
176 KOG2055 WD40 repeat protein [G 99.4 7.4E-12 1.6E-16 95.7 14.6 144 4-150 268-418 (514)
177 KOG1063 RNA polymerase II elon 99.4 3.4E-12 7.3E-17 101.6 12.6 146 4-149 536-699 (764)
178 KOG2445 Nuclear pore complex c 99.4 6.2E-11 1.3E-15 86.8 17.0 149 4-152 24-210 (361)
179 KOG1523 Actin-related protein 99.4 1.2E-11 2.6E-16 90.8 12.9 146 4-149 21-176 (361)
180 KOG1009 Chromatin assembly com 99.4 1E-11 2.2E-16 93.5 12.7 124 34-157 12-161 (434)
181 KOG1007 WD repeat protein TSSC 99.4 2E-11 4.3E-16 88.7 13.0 159 4-163 75-260 (370)
182 KOG2106 Uncharacterized conser 99.4 6.5E-11 1.4E-15 91.6 16.1 144 8-154 260-441 (626)
183 KOG4547 WD40 repeat-containing 99.4 1.5E-10 3.2E-15 90.8 18.0 167 1-169 1-192 (541)
184 KOG0290 Conserved WD40 repeat- 99.4 1.5E-11 3.1E-16 89.5 11.6 140 5-145 209-361 (364)
185 KOG2106 Uncharacterized conser 99.4 9.8E-11 2.1E-15 90.7 16.7 137 4-146 379-518 (626)
186 KOG1273 WD40 repeat protein [G 99.4 1.9E-11 4.2E-16 89.8 11.8 110 38-149 26-137 (405)
187 KOG1310 WD40 repeat protein [G 99.4 3.2E-12 6.9E-17 99.8 8.1 146 4-149 61-231 (758)
188 KOG0644 Uncharacterized conser 99.3 8E-13 1.7E-17 107.2 4.5 141 3-149 200-346 (1113)
189 KOG0642 Cell-cycle nuclear pro 99.3 1.2E-11 2.5E-16 96.5 10.0 123 30-152 289-429 (577)
190 KOG0974 WD-repeat protein WDR6 99.3 4.2E-11 9.1E-16 98.9 13.6 144 4-151 144-290 (967)
191 KOG2139 WD40 repeat protein [G 99.3 1.9E-10 4.2E-15 85.9 14.9 142 8-151 113-270 (445)
192 KOG1272 WD40-repeat-containing 99.3 1.5E-11 3.3E-16 94.1 8.6 162 3-166 139-340 (545)
193 KOG1517 Guanine nucleotide bin 99.3 7.9E-11 1.7E-15 97.9 13.1 147 5-152 1221-1384(1387)
194 KOG4227 WD40 repeat protein [G 99.3 1.9E-10 4.1E-15 87.0 13.9 149 4-152 67-228 (609)
195 KOG2919 Guanine nucleotide-bin 99.3 9.9E-11 2.1E-15 86.3 11.0 135 5-140 220-361 (406)
196 PF08662 eIF2A: Eukaryotic tra 99.3 1E-09 2.2E-14 77.8 16.0 119 39-160 9-144 (194)
197 PRK11028 6-phosphogluconolacto 99.3 2.4E-09 5.2E-14 81.7 19.3 143 7-151 4-158 (330)
198 KOG1240 Protein kinase contain 99.3 4.6E-10 9.9E-15 94.6 16.2 167 5-171 1061-1248(1431)
199 KOG4227 WD40 repeat protein [G 99.3 1.4E-10 3.1E-15 87.6 11.9 122 31-152 52-182 (609)
200 KOG1063 RNA polymerase II elon 99.2 5.9E-11 1.3E-15 94.7 9.9 121 29-151 519-650 (764)
201 KOG2394 WD40 protein DMR-N9 [G 99.2 3.3E-10 7.1E-15 88.4 13.0 162 8-169 188-383 (636)
202 KOG1310 WD40 repeat protein [G 99.2 4.8E-11 1E-15 93.3 8.4 129 28-157 43-187 (758)
203 PRK01742 tolB translocation pr 99.2 4.7E-10 1E-14 88.7 13.5 133 14-150 183-323 (429)
204 KOG4378 Nuclear protein COP1 [ 99.2 1.7E-10 3.8E-15 89.3 10.5 154 16-171 13-174 (673)
205 PRK11028 6-phosphogluconolacto 99.2 3.8E-09 8.1E-14 80.7 17.1 145 6-150 139-305 (330)
206 PRK01742 tolB translocation pr 99.1 3.2E-09 6.9E-14 84.0 15.0 163 4-173 258-427 (429)
207 KOG0280 Uncharacterized conser 99.1 8.1E-09 1.8E-13 75.4 15.5 160 7-166 87-259 (339)
208 KOG0974 WD-repeat protein WDR6 99.1 6.2E-09 1.4E-13 86.4 16.5 142 6-151 100-248 (967)
209 KOG1064 RAVE (regulator of V-A 99.1 8.9E-10 1.9E-14 95.9 11.1 142 6-153 2221-2370(2439)
210 KOG3914 WD repeat protein WDR4 99.1 4.2E-09 9E-14 79.5 13.4 151 4-158 73-232 (390)
211 KOG0771 Prolactin regulatory e 99.1 3.5E-09 7.6E-14 80.2 12.9 149 3-152 196-357 (398)
212 KOG2321 WD40 repeat protein [G 99.1 2.4E-09 5.1E-14 84.3 12.1 146 3-150 185-344 (703)
213 KOG1963 WD40 repeat protein [G 99.1 1.9E-08 4E-13 82.3 17.3 77 76-152 203-284 (792)
214 KOG4497 Uncharacterized conser 99.1 1.7E-08 3.7E-13 75.0 14.8 140 5-147 61-238 (447)
215 KOG1587 Cytoplasmic dynein int 99.1 5E-09 1.1E-13 84.3 13.0 144 6-150 361-517 (555)
216 KOG1538 Uncharacterized conser 99.0 1.1E-09 2.4E-14 87.8 8.6 140 4-150 23-163 (1081)
217 KOG2321 WD40 repeat protein [G 99.0 9.8E-09 2.1E-13 80.9 13.7 149 8-157 148-310 (703)
218 KOG1523 Actin-related protein 99.0 1E-08 2.3E-13 75.6 12.9 118 34-151 9-132 (361)
219 KOG4547 WD40 repeat-containing 99.0 5.1E-08 1.1E-12 76.8 17.2 145 2-150 67-221 (541)
220 KOG1538 Uncharacterized conser 99.0 1.1E-09 2.5E-14 87.7 8.1 109 37-149 14-122 (1081)
221 KOG3881 Uncharacterized conser 99.0 5.3E-09 1.2E-13 78.8 10.6 126 5-131 216-343 (412)
222 KOG1524 WD40 repeat-containing 99.0 3.8E-09 8.3E-14 82.7 9.9 141 5-150 75-217 (737)
223 KOG0644 Uncharacterized conser 99.0 2.2E-10 4.8E-15 93.4 3.2 112 32-149 187-300 (1113)
224 KOG1587 Cytoplasmic dynein int 99.0 1.3E-08 2.8E-13 82.0 12.8 144 8-151 308-474 (555)
225 KOG0650 WD40 repeat nucleolar 99.0 2.7E-09 5.8E-14 84.4 8.3 141 5-147 533-678 (733)
226 PRK03629 tolB translocation pr 99.0 2.2E-07 4.7E-12 73.6 18.5 133 15-151 179-321 (429)
227 PRK05137 tolB translocation pr 98.9 2.4E-07 5.1E-12 73.5 18.5 133 15-151 182-324 (435)
228 KOG4190 Uncharacterized conser 98.9 8.3E-09 1.8E-13 81.4 9.8 151 5-156 747-913 (1034)
229 KOG1963 WD40 repeat protein [G 98.9 1.1E-07 2.4E-12 78.0 16.5 142 10-151 176-324 (792)
230 KOG2139 WD40 repeat protein [G 98.9 2.5E-07 5.4E-12 69.6 16.9 140 6-149 154-309 (445)
231 KOG2695 WD40 repeat protein [G 98.9 1.1E-08 2.4E-13 76.3 9.0 152 9-164 228-391 (425)
232 PRK02889 tolB translocation pr 98.9 3.2E-07 7E-12 72.6 17.6 146 4-153 206-364 (427)
233 KOG1334 WD40 repeat protein [G 98.9 3.1E-09 6.7E-14 82.1 5.9 149 6-154 295-471 (559)
234 PRK05137 tolB translocation pr 98.9 3.7E-07 8E-12 72.4 17.8 144 4-151 212-368 (435)
235 PRK04922 tolB translocation pr 98.9 4.4E-07 9.6E-12 72.0 18.1 146 4-153 214-372 (433)
236 PRK04922 tolB translocation pr 98.9 2.8E-07 6.1E-12 73.1 16.9 148 6-159 261-420 (433)
237 KOG1240 Protein kinase contain 98.9 7.5E-08 1.6E-12 81.7 14.0 157 1-157 1106-1281(1431)
238 KOG1064 RAVE (regulator of V-A 98.9 5.4E-09 1.2E-13 91.2 7.5 140 6-158 2264-2407(2439)
239 TIGR02800 propeller_TolB tol-p 98.9 5.7E-07 1.2E-11 70.7 18.4 145 4-152 200-357 (417)
240 KOG0322 G-protein beta subunit 98.9 8.6E-09 1.9E-13 74.4 6.9 97 9-107 221-322 (323)
241 KOG0280 Uncharacterized conser 98.9 3.8E-08 8.2E-13 72.0 10.0 147 7-154 135-289 (339)
242 PRK03629 tolB translocation pr 98.9 7.3E-07 1.6E-11 70.7 18.1 145 4-152 209-366 (429)
243 KOG2111 Uncharacterized conser 98.8 7.1E-07 1.5E-11 66.0 15.8 100 10-109 154-257 (346)
244 PRK02889 tolB translocation pr 98.8 3.1E-07 6.7E-12 72.7 15.1 131 15-149 176-314 (427)
245 KOG1334 WD40 repeat protein [G 98.8 1.6E-08 3.5E-13 78.3 7.6 149 3-151 152-314 (559)
246 KOG2315 Predicted translation 98.8 7.3E-07 1.6E-11 70.2 16.6 129 16-151 252-392 (566)
247 KOG1409 Uncharacterized conser 98.8 1.1E-07 2.3E-12 71.1 10.9 145 6-152 127-273 (404)
248 PF00400 WD40: WD domain, G-be 98.8 2.2E-08 4.7E-13 52.0 5.4 37 70-106 3-39 (39)
249 PF02239 Cytochrom_D1: Cytochr 98.8 5.8E-06 1.2E-10 64.3 20.9 152 3-157 46-210 (369)
250 KOG4532 WD40-like repeat conta 98.8 1.5E-06 3.2E-11 63.2 16.2 152 8-159 131-292 (344)
251 PLN02919 haloacid dehalogenase 98.8 2E-06 4.4E-11 74.8 19.7 149 4-153 694-892 (1057)
252 KOG4532 WD40-like repeat conta 98.7 3.7E-06 8E-11 61.2 15.9 141 6-151 85-235 (344)
253 PF00400 WD40: WD domain, G-be 98.7 1.1E-07 2.3E-12 49.3 6.2 36 112-147 3-39 (39)
254 PF02239 Cytochrom_D1: Cytochr 98.7 8.7E-06 1.9E-10 63.3 19.1 142 7-151 8-160 (369)
255 KOG2695 WD40 repeat protein [G 98.7 1.6E-07 3.5E-12 70.2 8.7 118 2-120 261-388 (425)
256 PF11768 DUF3312: Protein of u 98.7 3.7E-07 8E-12 72.5 11.2 97 59-156 239-336 (545)
257 TIGR02800 propeller_TolB tol-p 98.7 5.1E-06 1.1E-10 65.4 17.7 135 14-152 169-313 (417)
258 PRK00178 tolB translocation pr 98.6 6.1E-06 1.3E-10 65.4 17.7 133 16-152 180-322 (430)
259 KOG1409 Uncharacterized conser 98.6 1.8E-06 4E-11 64.6 11.6 82 26-108 188-270 (404)
260 PRK00178 tolB translocation pr 98.6 1.1E-05 2.5E-10 63.8 17.0 145 4-152 209-366 (430)
261 KOG4497 Uncharacterized conser 98.5 9.5E-07 2.1E-11 65.9 8.6 132 3-138 18-152 (447)
262 PRK01029 tolB translocation pr 98.5 2.6E-05 5.6E-10 61.9 17.1 115 38-153 283-407 (428)
263 PRK04792 tolB translocation pr 98.5 2.1E-05 4.5E-10 62.8 16.6 145 4-152 228-385 (448)
264 KOG4714 Nucleoporin [Nuclear s 98.5 4.4E-07 9.5E-12 65.6 6.3 141 8-151 104-256 (319)
265 PRK04792 tolB translocation pr 98.5 2.5E-05 5.3E-10 62.4 16.5 133 16-152 199-341 (448)
266 KOG1354 Serine/threonine prote 98.5 2.1E-06 4.6E-11 64.4 9.5 146 5-152 176-362 (433)
267 KOG1354 Serine/threonine prote 98.4 6.7E-06 1.4E-10 61.8 11.5 146 4-150 36-245 (433)
268 KOG1275 PAB-dependent poly(A) 98.4 4.9E-06 1.1E-10 69.3 10.9 144 2-150 184-343 (1118)
269 COG4946 Uncharacterized protei 98.4 0.00017 3.8E-09 56.6 18.6 160 4-169 331-505 (668)
270 KOG0882 Cyclophilin-related pe 98.4 1.5E-05 3.2E-10 61.9 12.6 154 3-157 63-239 (558)
271 KOG4190 Uncharacterized conser 98.4 8.9E-07 1.9E-11 70.3 5.8 128 29-158 729-868 (1034)
272 PF13360 PQQ_2: PQQ-like domai 98.3 5.4E-05 1.2E-09 54.8 13.9 143 13-159 1-150 (238)
273 PF08450 SGL: SMP-30/Gluconola 98.3 0.0003 6.5E-09 51.5 17.7 143 4-151 11-166 (246)
274 KOG2066 Vacuolar assembly/sort 98.3 6.7E-05 1.4E-09 61.9 14.9 139 4-149 82-233 (846)
275 COG5170 CDC55 Serine/threonine 98.2 4.3E-06 9.3E-11 62.2 6.8 122 36-158 173-319 (460)
276 PF10282 Lactonase: Lactonase, 98.2 0.0011 2.5E-08 51.1 20.4 160 8-168 2-199 (345)
277 PF10282 Lactonase: Lactonase, 98.2 0.0011 2.3E-08 51.3 19.7 143 7-149 158-322 (345)
278 KOG4714 Nucleoporin [Nuclear s 98.2 9.8E-06 2.1E-10 58.8 7.7 92 17-109 161-255 (319)
279 COG2706 3-carboxymuconate cycl 98.2 0.00061 1.3E-08 51.6 17.2 138 14-151 63-223 (346)
280 PRK01029 tolB translocation pr 98.2 0.0005 1.1E-08 54.7 17.9 143 10-153 204-363 (428)
281 TIGR03300 assembly_YfgL outer 98.2 0.0003 6.5E-09 54.8 16.5 144 7-157 67-216 (377)
282 KOG1275 PAB-dependent poly(A) 98.2 4.9E-05 1.1E-09 63.6 12.0 141 5-151 147-301 (1118)
283 KOG3914 WD repeat protein WDR4 98.2 1.3E-05 2.8E-10 61.0 8.1 103 11-116 128-231 (390)
284 KOG1645 RING-finger-containing 98.1 2.1E-05 4.5E-10 60.2 8.7 92 17-111 175-269 (463)
285 PF15492 Nbas_N: Neuroblastoma 98.1 0.0015 3.3E-08 48.1 18.0 153 4-157 54-267 (282)
286 TIGR03300 assembly_YfgL outer 98.1 0.00027 5.9E-09 55.0 14.9 146 7-161 192-350 (377)
287 PLN02919 haloacid dehalogenase 98.1 0.00081 1.7E-08 59.1 19.0 147 7-154 638-838 (1057)
288 KOG1832 HIV-1 Vpr-binding prot 98.1 6.1E-06 1.3E-10 68.9 5.7 142 6-157 1114-1299(1516)
289 PF13360 PQQ_2: PQQ-like domai 98.1 0.00052 1.1E-08 49.7 15.4 148 7-158 38-200 (238)
290 KOG1008 Uncharacterized conser 98.1 8.9E-07 1.9E-11 71.1 0.8 142 5-147 70-223 (783)
291 KOG2041 WD40 repeat protein [G 98.1 1.8E-05 3.9E-10 64.8 8.1 146 5-150 26-187 (1189)
292 COG4946 Uncharacterized protei 98.0 0.001 2.2E-08 52.4 16.5 127 7-136 373-505 (668)
293 KOG0309 Conserved WD40 repeat- 98.0 4.6E-05 9.9E-10 62.6 9.3 129 3-132 125-258 (1081)
294 KOG1645 RING-finger-containing 98.0 3.1E-05 6.8E-10 59.3 7.3 80 73-152 188-269 (463)
295 PRK04043 tolB translocation pr 98.0 0.0022 4.8E-08 50.9 17.5 132 14-152 212-360 (419)
296 PF08450 SGL: SMP-30/Gluconola 97.9 0.0051 1.1E-07 45.0 20.4 164 4-172 51-236 (246)
297 PF08553 VID27: VID27 cytoplas 97.8 0.0023 5E-08 54.1 16.0 141 4-149 492-647 (794)
298 KOG0309 Conserved WD40 repeat- 97.8 8.6E-05 1.9E-09 61.1 7.4 142 8-151 85-234 (1081)
299 smart00320 WD40 WD40 repeats. 97.8 8.3E-05 1.8E-09 36.7 4.9 36 71-106 5-40 (40)
300 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.0092 2E-07 46.2 18.4 114 5-120 13-148 (352)
301 COG2706 3-carboxymuconate cycl 97.8 0.0046 1E-07 46.9 15.5 148 4-151 99-276 (346)
302 PF07433 DUF1513: Protein of u 97.8 0.0084 1.8E-07 45.2 16.9 146 13-158 75-256 (305)
303 KOG1912 WD40 repeat protein [G 97.8 0.0019 4.1E-08 53.8 14.1 145 3-150 24-187 (1062)
304 TIGR02658 TTQ_MADH_Hv methylam 97.7 0.012 2.5E-07 45.6 19.8 112 46-157 205-338 (352)
305 PF11768 DUF3312: Protein of u 97.7 0.00058 1.3E-08 54.8 10.8 70 35-108 259-329 (545)
306 KOG4640 Anaphase-promoting com 97.7 0.00024 5.2E-09 57.4 8.5 79 78-157 20-100 (665)
307 PF04762 IKI3: IKI3 family; I 97.7 0.0027 5.8E-08 55.1 15.5 142 3-148 219-378 (928)
308 KOG2395 Protein involved in va 97.7 0.0023 4.9E-08 51.2 13.7 145 2-149 343-500 (644)
309 COG5170 CDC55 Serine/threonine 97.7 0.00031 6.6E-09 52.6 8.4 144 5-149 38-252 (460)
310 PRK04043 tolB translocation pr 97.7 0.0082 1.8E-07 47.7 16.8 137 6-149 246-400 (419)
311 smart00320 WD40 WD40 repeats. 97.6 0.00031 6.7E-09 34.5 5.5 30 118-147 11-40 (40)
312 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0047 1E-07 39.5 11.7 90 6-103 16-109 (111)
313 PF04762 IKI3: IKI3 family; I 97.6 0.011 2.5E-07 51.4 17.1 146 4-150 267-457 (928)
314 KOG1912 WD40 repeat protein [G 97.6 0.00024 5.3E-09 58.8 6.6 106 6-111 438-554 (1062)
315 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0093 2E-07 38.1 13.8 90 47-144 16-109 (111)
316 KOG2041 WD40 repeat protein [G 97.5 0.0022 4.7E-08 53.1 10.8 108 36-143 15-139 (1189)
317 PF04053 Coatomer_WDAD: Coatom 97.5 0.0047 1E-07 49.3 12.5 140 6-153 118-266 (443)
318 KOG2114 Vacuolar assembly/sort 97.4 0.056 1.2E-06 45.8 18.7 146 6-152 78-246 (933)
319 KOG2444 WD40 repeat protein [G 97.4 0.00039 8.5E-09 49.7 5.5 142 7-150 32-178 (238)
320 KOG2066 Vacuolar assembly/sort 97.4 0.011 2.4E-07 49.4 14.3 138 5-157 49-195 (846)
321 PF04841 Vps16_N: Vps16, N-ter 97.4 0.045 9.8E-07 43.4 18.3 48 16-64 62-109 (410)
322 COG5354 Uncharacterized protei 97.4 0.013 2.8E-07 46.7 13.6 132 15-152 255-398 (561)
323 PRK02888 nitrous-oxide reducta 97.3 0.029 6.3E-07 46.3 15.7 94 56-150 296-405 (635)
324 PF08596 Lgl_C: Lethal giant l 97.3 0.0026 5.6E-08 50.1 9.5 136 7-150 15-174 (395)
325 KOG3621 WD40 repeat-containing 97.3 0.0044 9.6E-08 50.9 10.9 104 5-109 45-155 (726)
326 KOG2315 Predicted translation 97.3 0.0053 1.1E-07 49.1 10.9 89 14-109 293-391 (566)
327 KOG2114 Vacuolar assembly/sort 97.3 0.022 4.9E-07 48.0 14.6 147 4-152 34-204 (933)
328 PRK11138 outer membrane biogen 97.3 0.028 6.1E-07 44.1 14.9 147 7-158 71-232 (394)
329 KOG4640 Anaphase-promoting com 97.2 0.0029 6.4E-08 51.4 8.8 90 36-128 21-114 (665)
330 PF04053 Coatomer_WDAD: Coatom 97.2 0.019 4.2E-07 45.9 13.3 132 5-151 44-175 (443)
331 KOG0882 Cyclophilin-related pe 97.2 0.0016 3.5E-08 50.9 6.7 143 6-150 21-175 (558)
332 PRK11138 outer membrane biogen 97.2 0.027 5.9E-07 44.3 13.9 144 8-159 208-363 (394)
333 PF03178 CPSF_A: CPSF A subuni 97.2 0.066 1.4E-06 40.8 17.9 130 15-150 62-203 (321)
334 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0027 5.9E-08 34.1 5.7 37 117-154 9-45 (47)
335 COG5354 Uncharacterized protei 97.1 0.042 9E-07 43.9 14.0 136 11-151 198-350 (561)
336 PF14761 HPS3_N: Hermansky-Pud 97.1 0.04 8.7E-07 39.4 12.6 108 44-153 26-167 (215)
337 KOG3617 WD40 and TPR repeat-co 97.1 0.0021 4.7E-08 54.1 6.8 107 39-149 19-131 (1416)
338 PF03178 CPSF_A: CPSF A subuni 97.0 0.054 1.2E-06 41.3 14.0 128 14-144 106-260 (321)
339 KOG2314 Translation initiation 97.0 0.014 3E-07 47.0 10.5 126 5-136 222-363 (698)
340 KOG1920 IkappaB kinase complex 96.9 0.016 3.5E-07 50.5 11.0 120 40-162 200-335 (1265)
341 KOG1920 IkappaB kinase complex 96.9 0.033 7.2E-07 48.7 12.6 105 3-109 205-323 (1265)
342 KOG1008 Uncharacterized conser 96.9 0.00043 9.2E-09 56.3 1.4 134 13-150 127-276 (783)
343 COG5167 VID27 Protein involved 96.8 0.086 1.9E-06 42.6 13.3 141 5-149 480-632 (776)
344 KOG3617 WD40 and TPR repeat-co 96.8 0.0028 6E-08 53.5 5.3 100 5-108 27-131 (1416)
345 KOG2079 Vacuolar assembly/sort 96.8 0.0056 1.2E-07 52.7 7.0 69 89-157 98-168 (1206)
346 PF07433 DUF1513: Protein of u 96.8 0.16 3.4E-06 38.5 15.0 126 13-140 136-277 (305)
347 KOG3621 WD40 repeat-containing 96.8 0.023 4.9E-07 47.0 10.1 113 37-150 35-155 (726)
348 KOG4441 Proteins containing BT 96.7 0.1 2.2E-06 43.3 14.0 149 5-157 285-460 (571)
349 PHA02713 hypothetical protein; 96.7 0.041 8.8E-07 45.4 11.8 145 4-154 351-538 (557)
350 cd00216 PQQ_DH Dehydrogenases 96.7 0.17 3.7E-06 41.1 15.1 147 8-158 64-273 (488)
351 PF15492 Nbas_N: Neuroblastoma 96.6 0.12 2.6E-06 38.4 12.4 111 8-118 112-269 (282)
352 PF00780 CNH: CNH domain; Int 96.6 0.17 3.7E-06 37.5 16.7 143 4-151 6-167 (275)
353 KOG2314 Translation initiation 96.6 0.037 8E-07 44.8 10.0 112 37-150 447-574 (698)
354 PRK02888 nitrous-oxide reducta 96.6 0.16 3.4E-06 42.2 13.8 95 14-109 295-405 (635)
355 COG0823 TolB Periplasmic compo 96.5 0.1 2.2E-06 41.6 12.4 133 15-152 218-361 (425)
356 KOG1832 HIV-1 Vpr-binding prot 96.5 0.0026 5.7E-08 53.9 3.5 125 27-156 1093-1221(1516)
357 cd00216 PQQ_DH Dehydrogenases 96.4 0.28 6.2E-06 39.8 14.7 139 16-163 257-438 (488)
358 PF14870 PSII_BNR: Photosynthe 96.4 0.27 5.9E-06 37.4 13.9 141 3-146 154-301 (302)
359 PF05694 SBP56: 56kDa selenium 96.3 0.41 8.8E-06 38.1 14.1 149 4-152 140-345 (461)
360 KOG4649 PQQ (pyrrolo-quinoline 96.3 0.3 6.4E-06 36.3 16.0 135 5-143 23-159 (354)
361 PHA02713 hypothetical protein; 96.3 0.27 5.8E-06 40.7 13.9 148 4-154 303-494 (557)
362 KOG2079 Vacuolar assembly/sort 96.3 0.025 5.4E-07 48.9 7.9 96 51-149 104-203 (1206)
363 PHA03098 kelch-like protein; P 96.1 0.43 9.2E-06 39.1 14.1 145 5-154 343-516 (534)
364 PF07569 Hira: TUP1-like enhan 96.0 0.11 2.3E-06 37.6 9.4 66 86-152 18-98 (219)
365 PF00780 CNH: CNH domain; Int 95.9 0.45 9.7E-06 35.3 16.7 142 10-160 109-266 (275)
366 PF12894 Apc4_WD40: Anaphase-p 95.9 0.035 7.6E-07 29.8 4.8 32 78-109 11-42 (47)
367 KOG4441 Proteins containing BT 95.9 0.43 9.3E-06 39.7 13.3 149 4-158 380-555 (571)
368 PHA02790 Kelch-like protein; P 95.9 0.58 1.3E-05 38.0 13.8 143 5-154 272-428 (480)
369 PF10168 Nup88: Nuclear pore c 95.9 0.71 1.5E-05 39.4 14.6 96 37-154 86-184 (717)
370 KOG4649 PQQ (pyrrolo-quinoline 95.9 0.5 1.1E-05 35.1 13.0 105 48-157 24-131 (354)
371 PHA02790 Kelch-like protein; P 95.8 0.62 1.4E-05 37.8 13.9 142 4-153 318-474 (480)
372 PF14781 BBS2_N: Ciliary BBSom 95.7 0.33 7.2E-06 32.2 10.0 79 91-170 11-102 (136)
373 KOG2444 WD40 repeat protein [G 95.7 0.042 9E-07 39.6 5.9 101 7-109 72-178 (238)
374 PHA03098 kelch-like protein; P 95.7 0.76 1.6E-05 37.7 13.9 146 5-154 295-469 (534)
375 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 0.6 1.3E-05 38.4 12.9 65 99-163 440-504 (527)
376 PF08553 VID27: VID27 cytoplas 95.4 0.27 5.8E-06 42.2 10.6 96 9-107 546-646 (794)
377 PF12234 Rav1p_C: RAVE protein 95.4 1.2 2.5E-05 37.4 14.0 105 44-151 38-158 (631)
378 COG3386 Gluconolactonase [Carb 95.3 0.97 2.1E-05 34.5 13.1 112 24-136 151-272 (307)
379 KOG2280 Vacuolar assembly/sort 95.2 1 2.3E-05 38.1 13.0 142 16-158 65-255 (829)
380 PRK13616 lipoprotein LpqB; Pro 95.1 0.67 1.5E-05 38.7 11.8 103 37-145 351-472 (591)
381 COG3391 Uncharacterized conser 95.0 1.3 2.9E-05 34.8 17.5 147 6-156 87-246 (381)
382 PF06433 Me-amine-dh_H: Methyl 95.0 1.2 2.7E-05 34.3 12.4 135 15-154 17-171 (342)
383 COG0823 TolB Periplasmic compo 94.8 0.68 1.5E-05 37.0 10.9 128 5-136 250-386 (425)
384 KOG1900 Nuclear pore complex, 94.8 0.85 1.8E-05 40.8 11.9 136 12-150 96-273 (1311)
385 PF11715 Nup160: Nucleoporin N 94.7 0.21 4.6E-06 41.1 8.0 37 121-157 216-256 (547)
386 PF06977 SdiA-regulated: SdiA- 94.6 0.91 2E-05 33.6 10.4 114 35-150 21-148 (248)
387 PF06433 Me-amine-dh_H: Methyl 94.0 2.2 4.8E-05 33.0 12.4 67 101-167 270-338 (342)
388 PF08728 CRT10: CRT10; InterP 93.6 1.9 4.1E-05 36.7 11.4 105 3-108 112-246 (717)
389 PF06977 SdiA-regulated: SdiA- 93.6 2.2 4.9E-05 31.5 18.6 149 4-154 33-205 (248)
390 PF07569 Hira: TUP1-like enhan 93.5 0.44 9.5E-06 34.5 6.9 63 4-66 21-97 (219)
391 PF05694 SBP56: 56kDa selenium 93.4 3.4 7.5E-05 33.1 12.7 125 12-136 219-390 (461)
392 TIGR03548 mutarot_permut cycli 93.0 3.1 6.8E-05 31.7 14.7 55 57-112 140-198 (323)
393 PF12234 Rav1p_C: RAVE protein 92.8 2.1 4.5E-05 36.0 10.4 62 87-148 38-103 (631)
394 PF14655 RAB3GAP2_N: Rab3 GTPa 92.7 2.7 5.9E-05 33.5 10.6 83 76-158 305-407 (415)
395 KOG4460 Nuclear pore complex, 92.7 1.9 4.2E-05 35.3 9.6 80 80-159 105-208 (741)
396 COG3490 Uncharacterized protei 92.5 3.6 7.9E-05 31.2 12.4 149 23-172 56-232 (366)
397 PF05096 Glu_cyclase_2: Glutam 92.1 3.9 8.4E-05 30.5 17.4 145 4-154 55-208 (264)
398 PF10313 DUF2415: Uncharacteri 91.9 0.78 1.7E-05 24.0 4.6 30 80-109 2-34 (43)
399 PF15390 DUF4613: Domain of un 91.7 6.8 0.00015 32.7 11.8 114 37-151 58-188 (671)
400 KOG2395 Protein involved in va 91.6 2.9 6.3E-05 34.2 9.5 95 10-107 399-499 (644)
401 PF04841 Vps16_N: Vps16, N-ter 91.6 5.9 0.00013 31.6 15.6 54 79-132 217-272 (410)
402 PF10313 DUF2415: Uncharacteri 91.5 1.2 2.6E-05 23.4 5.3 31 121-151 2-35 (43)
403 PF14727 PHTB1_N: PTHB1 N-term 91.5 6.2 0.00013 31.6 16.5 145 4-149 36-204 (418)
404 KOG3630 Nuclear pore complex, 91.2 0.98 2.1E-05 40.1 6.9 126 8-136 117-260 (1405)
405 PF08801 Nucleoporin_N: Nup133 91.0 6.8 0.00015 31.2 12.0 30 121-150 191-220 (422)
406 PRK13616 lipoprotein LpqB; Pro 90.9 8.7 0.00019 32.3 13.5 70 78-149 447-525 (591)
407 PF00930 DPPIV_N: Dipeptidyl p 90.8 0.94 2E-05 35.1 6.2 82 55-140 22-121 (353)
408 PF00930 DPPIV_N: Dipeptidyl p 90.7 0.4 8.7E-06 37.2 4.1 82 14-97 22-119 (353)
409 TIGR02604 Piru_Ver_Nterm putat 90.6 6.9 0.00015 30.6 13.5 101 37-138 73-202 (367)
410 PF11715 Nup160: Nucleoporin N 90.5 2.6 5.7E-05 34.8 8.9 36 80-115 216-255 (547)
411 COG3204 Uncharacterized protei 90.2 6.7 0.00015 29.8 10.8 115 36-151 86-212 (316)
412 PF02897 Peptidase_S9_N: Proly 90.1 8.1 0.00018 30.5 11.4 110 39-151 127-262 (414)
413 PF07250 Glyoxal_oxid_N: Glyox 89.5 4.1 9E-05 30.0 8.3 89 58-148 48-147 (243)
414 COG3386 Gluconolactonase [Carb 89.3 8.2 0.00018 29.6 15.2 142 17-160 87-253 (307)
415 PF07250 Glyoxal_oxid_N: Glyox 89.0 7.6 0.00016 28.7 11.8 122 39-162 70-211 (243)
416 KOG2247 WD40 repeat-containing 88.3 0.053 1.1E-06 43.4 -2.3 128 8-140 49-179 (615)
417 KOG1916 Nuclear protein, conta 87.7 1.2 2.6E-05 38.7 4.9 137 15-154 153-328 (1283)
418 TIGR03074 PQQ_membr_DH membran 87.5 18 0.0004 31.4 12.5 69 90-158 260-353 (764)
419 PF08596 Lgl_C: Lethal giant l 87.5 13 0.00028 29.6 14.6 150 6-156 98-297 (395)
420 PF08728 CRT10: CRT10; InterP 87.4 17 0.00038 31.2 11.4 63 88-150 112-196 (717)
421 PLN02153 epithiospecifier prot 87.1 12 0.00026 28.8 15.8 54 100-154 217-289 (341)
422 TIGR02276 beta_rpt_yvtn 40-res 87.1 2.6 5.6E-05 21.2 5.5 39 89-127 2-41 (42)
423 PLN02193 nitrile-specifier pro 86.8 15 0.00033 29.8 15.6 145 5-154 229-415 (470)
424 COG3391 Uncharacterized conser 86.8 14 0.0003 29.2 19.0 143 13-157 138-291 (381)
425 PF02897 Peptidase_S9_N: Proly 86.7 14 0.0003 29.2 18.5 146 6-152 137-312 (414)
426 PF12768 Rax2: Cortical protei 86.5 12 0.00026 28.3 9.5 94 55-150 15-124 (281)
427 PF03088 Str_synth: Strictosid 85.5 5 0.00011 24.7 5.7 42 96-137 33-74 (89)
428 PLN02153 epithiospecifier prot 85.0 15 0.00034 28.2 15.4 96 57-154 102-230 (341)
429 PF10647 Gmad1: Lipoprotein Lp 84.7 14 0.0003 27.3 13.8 110 37-149 25-144 (253)
430 KOG4499 Ca2+-binding protein R 84.6 14 0.0003 27.4 12.2 91 39-129 161-263 (310)
431 PF14761 HPS3_N: Hermansky-Pud 84.1 11 0.00024 27.3 7.7 41 97-137 35-77 (215)
432 COG5167 VID27 Protein involved 83.9 4.6 0.0001 33.1 6.3 63 2-64 570-632 (776)
433 TIGR02276 beta_rpt_yvtn 40-res 82.4 4.7 0.0001 20.2 6.1 30 5-34 4-33 (42)
434 smart00564 PQQ beta-propeller 82.1 4 8.7E-05 19.3 3.8 24 7-30 8-31 (33)
435 KOG3630 Nuclear pore complex, 82.1 14 0.0003 33.4 8.8 145 7-151 55-230 (1405)
436 COG3490 Uncharacterized protei 81.9 21 0.00045 27.3 12.7 142 15-157 140-318 (366)
437 TIGR03547 muta_rot_YjhT mutatr 79.7 26 0.00056 27.0 12.8 12 15-26 168-179 (346)
438 KOG4499 Ca2+-binding protein R 79.4 8 0.00017 28.6 5.6 43 4-46 222-264 (310)
439 KOG2377 Uncharacterized conser 78.6 35 0.00076 27.9 13.6 111 37-149 24-140 (657)
440 TIGR03118 PEPCTERM_chp_1 conse 78.4 28 0.00062 26.8 12.6 114 38-151 25-172 (336)
441 PF12657 TFIIIC_delta: Transcr 78.3 20 0.00042 24.8 8.1 32 120-151 86-123 (173)
442 TIGR03074 PQQ_membr_DH membran 78.2 46 0.001 29.1 12.1 27 7-33 196-222 (764)
443 TIGR03075 PQQ_enz_alc_DH PQQ-d 77.6 40 0.00086 28.0 10.8 108 46-158 69-198 (527)
444 PF15390 DUF4613: Domain of un 76.6 45 0.00097 28.1 13.4 101 7-108 74-186 (671)
445 PF14583 Pectate_lyase22: Olig 76.2 37 0.00081 27.0 12.3 144 5-150 48-223 (386)
446 PF03022 MRJP: Major royal jel 76.2 31 0.00068 26.1 12.4 135 15-150 34-216 (287)
447 KOG2377 Uncharacterized conser 74.2 47 0.001 27.2 11.8 100 34-135 65-169 (657)
448 PF01011 PQQ: PQQ enzyme repea 73.6 9.6 0.00021 18.9 4.6 27 8-34 3-29 (38)
449 PRK14131 N-acetylneuraminic ac 73.1 43 0.00093 26.2 11.8 12 16-27 190-201 (376)
450 PF01731 Arylesterase: Arylest 72.3 19 0.00042 21.9 6.3 50 99-150 35-85 (86)
451 PF12768 Rax2: Cortical protei 70.9 43 0.00094 25.3 11.1 96 14-109 15-124 (281)
452 KOG1916 Nuclear protein, conta 69.6 2.6 5.7E-05 36.8 1.4 81 81-161 186-282 (1283)
453 PF01436 NHL: NHL repeat; Int 69.6 10 0.00022 17.5 4.0 24 81-104 4-27 (28)
454 PRK13684 Ycf48-like protein; P 69.3 51 0.0011 25.5 15.4 112 35-149 214-331 (334)
455 PF14870 PSII_BNR: Photosynthe 69.3 49 0.0011 25.4 20.2 134 34-172 143-287 (302)
456 KOG3616 Selective LIM binding 68.8 12 0.00027 32.4 5.0 68 78-147 14-81 (1636)
457 TIGR03548 mutarot_permut cycli 66.8 55 0.0012 24.9 14.8 66 89-154 123-199 (323)
458 PF03088 Str_synth: Strictosid 66.5 23 0.0005 21.7 4.8 46 11-57 33-78 (89)
459 PF05096 Glu_cyclase_2: Glutam 66.5 53 0.0011 24.7 15.6 117 37-157 46-165 (264)
460 COG3823 Glutamine cyclotransfe 66.1 49 0.0011 24.2 11.9 101 4-109 55-159 (262)
461 PF14655 RAB3GAP2_N: Rab3 GTPa 65.6 70 0.0015 25.8 9.8 38 90-127 79-116 (415)
462 PLN00033 photosystem II stabil 65.2 70 0.0015 25.6 16.3 108 35-146 280-396 (398)
463 PF12341 DUF3639: Protein of u 64.8 14 0.00029 17.3 3.7 25 121-147 3-27 (27)
464 KOG3616 Selective LIM binding 64.4 17 0.00038 31.5 5.1 35 118-152 13-47 (1636)
465 KOG0918 Selenium-binding prote 63.9 75 0.0016 25.5 9.5 96 57-152 230-345 (476)
466 COG5308 NUP170 Nuclear pore co 62.9 84 0.0018 28.1 8.8 138 12-151 99-277 (1263)
467 COG5276 Uncharacterized conser 62.0 72 0.0016 24.6 19.3 139 8-152 99-244 (370)
468 PF07995 GSDH: Glucose / Sorbo 62.0 72 0.0016 24.6 10.7 101 38-139 4-133 (331)
469 TIGR02604 Piru_Ver_Nterm putat 61.8 75 0.0016 24.8 12.7 100 37-138 15-142 (367)
470 COG4590 ABC-type uncharacteriz 61.3 92 0.002 25.7 8.9 102 49-151 283-388 (733)
471 PLN02193 nitrile-specifier pro 61.1 89 0.0019 25.4 15.4 94 57-154 245-356 (470)
472 KOG1897 Damage-specific DNA bi 60.9 1.3E+02 0.0028 27.2 13.1 101 48-149 501-613 (1096)
473 PF05935 Arylsulfotrans: Aryls 60.8 92 0.002 25.5 15.4 37 122-158 273-310 (477)
474 TIGR03118 PEPCTERM_chp_1 conse 58.5 84 0.0018 24.3 8.2 72 78-149 22-118 (336)
475 COG1520 FOG: WD40-like repeat 58.1 87 0.0019 24.4 14.9 145 8-156 71-224 (370)
476 PF02333 Phytase: Phytase; In 57.5 97 0.0021 24.7 13.0 104 6-110 172-292 (381)
477 KOG1897 Damage-specific DNA bi 56.9 1.5E+02 0.0033 26.8 14.9 100 46-149 839-942 (1096)
478 PF07676 PD40: WD40-like Beta 56.6 23 0.00051 17.3 4.7 29 77-105 7-38 (39)
479 COG4257 Vgb Streptogramin lyas 53.9 98 0.0021 23.7 13.6 133 10-151 78-220 (353)
480 PF13570 PQQ_3: PQQ-like domai 53.5 28 0.00061 17.3 3.3 21 130-150 20-40 (40)
481 TIGR03547 muta_rot_YjhT mutatr 52.9 1E+02 0.0022 23.6 15.0 42 57-99 86-128 (346)
482 KOG2103 Uncharacterized conser 52.3 1.3E+02 0.0027 26.6 8.1 78 79-162 36-116 (910)
483 KOG1898 Splicing factor 3b, su 51.7 1.9E+02 0.0042 26.4 11.9 64 41-106 939-1002(1205)
484 PF14781 BBS2_N: Ciliary BBSom 51.4 72 0.0016 21.4 12.2 100 6-109 11-126 (136)
485 COG3292 Predicted periplasmic 51.1 1.5E+02 0.0033 25.1 10.3 116 38-158 378-500 (671)
486 PF14779 BBS1: Ciliary BBSome 48.3 1.1E+02 0.0024 22.9 6.6 67 79-145 177-254 (257)
487 PF14583 Pectate_lyase22: Olig 48.2 99 0.0022 24.7 6.6 68 85-152 42-113 (386)
488 PRK14131 N-acetylneuraminic ac 47.6 1.4E+02 0.0029 23.5 12.2 13 101-113 190-202 (376)
489 KOG2280 Vacuolar assembly/sort 46.9 2E+02 0.0044 25.2 10.9 53 79-131 217-271 (829)
490 PF10647 Gmad1: Lipoprotein Lp 46.0 1.2E+02 0.0026 22.4 15.1 109 37-145 67-192 (253)
491 PF11635 Med16: Mediator compl 45.8 97 0.0021 27.1 6.8 66 79-144 260-345 (753)
492 PF14269 Arylsulfotran_2: Aryl 45.4 1.4E+02 0.0029 22.9 7.4 68 81-148 146-219 (299)
493 PF10395 Utp8: Utp8 family; I 44.8 2.1E+02 0.0045 24.8 13.1 149 4-158 140-314 (670)
494 PF08954 DUF1900: Domain of un 43.9 86 0.0019 20.9 5.0 37 115-151 6-43 (136)
495 PF14779 BBS1: Ciliary BBSome 41.8 1.4E+02 0.003 22.4 6.2 58 47-104 196-254 (257)
496 KOG1896 mRNA cleavage and poly 40.6 3.1E+02 0.0068 25.6 13.4 112 35-151 1097-1215(1366)
497 TIGR03032 conserved hypothetic 40.3 1.8E+02 0.0038 22.7 9.9 46 5-53 213-258 (335)
498 KOG2109 WD40 repeat protein [G 40.1 32 0.00069 29.3 2.9 47 17-63 297-343 (788)
499 COG3204 Uncharacterized protei 39.5 1.8E+02 0.0038 22.5 13.8 145 5-149 97-263 (316)
500 PF02333 Phytase: Phytase; In 39.1 2E+02 0.0043 23.0 17.3 142 5-150 68-238 (381)
No 1
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3e-35 Score=206.83 Aligned_cols=169 Identities=64% Similarity=1.046 Sum_probs=157.0
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+.-+|+|+|+|-|||+|...+|.|.++++..+++|+.+...|++.++++++...||+||++++++.++.+++.|+++|.+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 45689999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC-cccc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG-LQYG 162 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~ 162 (174)
++|..+|++++||++||++||||+|.+.+...+.+.++|+++..+|+...|++|.++|.|++||+.+..|.+++- -...
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874 3334
Q ss_pred eeEEEEEeec
Q 042260 163 LRTFLFYHQD 172 (174)
Q Consensus 163 ~~~~~~~~~~ 172 (174)
..+.+-.|+|
T Consensus 169 ~i~sl~v~~d 178 (311)
T KOG0315|consen 169 SIQSLTVMPD 178 (311)
T ss_pred ceeeEEEcCC
Confidence 4666666665
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.8e-30 Score=190.26 Aligned_cols=165 Identities=27% Similarity=0.458 Sum_probs=147.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
...||||+.||++++|++.+...+..+.+|...|..++|+|+|.++.++ -|.+-|+||++++.. .+-..+|...|.+
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E--lL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE--LLLQEGHSKGVFS 308 (459)
T ss_pred ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh--hHhhcccccccce
Confidence 3469999999999999999989999999999999999999999998764 688899999998743 3445789999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG 162 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 162 (174)
++|.++|.+++||+.|..-+|||+|+..++..+. |-.+|.++.|+|+|-.||+||+|+++++||++-.++++.++.+.+
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n 388 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN 388 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc
Confidence 9999999999999999999999999999988774 567899999999999999999999999999999999999998877
Q ss_pred eeEEEEEee
Q 042260 163 LRTFLFYHQ 171 (174)
Q Consensus 163 ~~~~~~~~~ 171 (174)
+.+-+=|.|
T Consensus 389 lVS~Vk~~p 397 (459)
T KOG0272|consen 389 LVSQVKYSP 397 (459)
T ss_pred hhhheEecc
Confidence 766555544
No 3
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.4e-27 Score=169.20 Aligned_cols=164 Identities=22% Similarity=0.357 Sum_probs=141.9
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEee--cCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYD--QHTN 79 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~--~~~~ 79 (174)
.++.+.+++|+|+++|+||+.+|+..+.+.+|...|.+++|++++..+++ +-|.+|++|+.... +..+.. .+++
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~---ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV---CKYTIHEDSHRE 149 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc---EEEEEecCCCcC
Confidence 46788999999999999999999999999999999999999998876665 56899999998654 233332 2378
Q ss_pred CEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 80 NVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 80 ~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
-|.++.|+|+ .-.|++++.|++|++||++..+....+ .+...++.++++|+|..+++|+.||.+.+||++.+++.+.
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 8999999997 568999999999999999988766555 4567799999999999999999999999999999999999
Q ss_pred cCcccceeEEEEE
Q 042260 157 LGLQYGLRTFLFY 169 (174)
Q Consensus 157 ~~~~~~~~~~~~~ 169 (174)
+++...+.+..|.
T Consensus 230 l~a~~~v~sl~fs 242 (315)
T KOG0279|consen 230 LEAFDIVNSLCFS 242 (315)
T ss_pred ccCCCeEeeEEec
Confidence 9988888877774
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.7e-27 Score=188.68 Aligned_cols=154 Identities=25% Similarity=0.479 Sum_probs=140.9
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
++..+|+++|.|+++|+|.+.+..++..+++|..+|+.+.|+|.|.+++++ .|++.++|..... .+...+.+|.+.|
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~--~PlRifaghlsDV 538 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN--KPLRIFAGHLSDV 538 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC--Cchhhhccccccc
Confidence 467789999999999999999999999999999999999999999988765 6888999998765 5566678999999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
.|+.|+|+..+++|||.|.+||+||+.++.++..| .|..+|.+++|+|+|.+|++|+.|+.|++||+.+++.+-++.
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred ceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence 99999999999999999999999999999888877 578999999999999999999999999999999988876663
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.9e-28 Score=181.25 Aligned_cols=158 Identities=22% Similarity=0.376 Sum_probs=141.0
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++++|+|++.|.+-++||++++.++.-..+|...|.+++|+++|.++++++ |...|+||++++ .++..+.+|..+|
T Consensus 271 PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg--r~im~L~gH~k~I 348 (459)
T KOG0272|consen 271 PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG--RCIMFLAGHIKEI 348 (459)
T ss_pred CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccC--cEEEEecccccce
Confidence 4789999999999999999999999988899999999999999999988765 667899999998 5677888999999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
.+++|+|+|..++|||.|++++|||++......++. |..-|..+.|.| .+.+|++++.|++++||.-++.++..++-.
T Consensus 349 ~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 349 LSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred eeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence 999999999999999999999999999888877765 456789999999 677899999999999999999988877643
Q ss_pred ccc
Q 042260 160 QYG 162 (174)
Q Consensus 160 ~~~ 162 (174)
+-+
T Consensus 429 He~ 431 (459)
T KOG0272|consen 429 HEG 431 (459)
T ss_pred Ccc
Confidence 333
No 6
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=3.9e-27 Score=173.24 Aligned_cols=167 Identities=22% Similarity=0.420 Sum_probs=147.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
.+..++||+.|++++|||+.+|+...++.+|...|..+++++...++. ++.|+.+++||++.+ +.+..|-+|-..|.
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n--kvIR~YhGHlS~V~ 239 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN--KVIRHYHGHLSGVY 239 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh--hhHHHhccccceeE
Confidence 456899999999999999999999999999988999999999777655 567889999999877 44566789999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
+++..|.-..|+||+.|..+|+||+|+...+..+. |..+|.++.+.|....+++|+-|++|++||+++++-...+.+..
T Consensus 240 ~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk 319 (460)
T KOG0285|consen 240 CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK 319 (460)
T ss_pred EEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccc
Confidence 99999999999999999999999999988887775 78999999999999999999999999999999999888887665
Q ss_pred ceeEEEEEeec
Q 042260 162 GLRTFLFYHQD 172 (174)
Q Consensus 162 ~~~~~~~~~~~ 172 (174)
.-.+-+-.||.
T Consensus 320 ksvral~lhP~ 330 (460)
T KOG0285|consen 320 KSVRALCLHPK 330 (460)
T ss_pred ceeeEEecCCc
Confidence 55566666654
No 7
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=179.96 Aligned_cols=169 Identities=27% Similarity=0.438 Sum_probs=152.8
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+.-+++||.|..||||+.++++.+..+..|...|.+++.+|...++.++ .|-.||+||++. ++.+..++.+|.--|..
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQ 145 (794)
T ss_pred cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEE
Confidence 3458999999999999999999999999999999999999998877665 556899999975 57778889999999999
Q ss_pred EEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEcc--CCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 84 VGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHP--NQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 84 ~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
++|+| +.+.|+++|-|++|++|.+.++.+..+++ |...|+++.+-+ +.+++++|+.|.+|++||..+++|++.++.
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG 225 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG 225 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence 99998 67799999999999999999999988885 567899999986 457999999999999999999999999999
Q ss_pred ccceeEEEEEeecCC
Q 042260 160 QYGLRTFLFYHQDMT 174 (174)
Q Consensus 160 ~~~~~~~~~~~~~~~ 174 (174)
+.+...++++||.++
T Consensus 226 Ht~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 226 HTNNVSFVFFHPELP 240 (794)
T ss_pred ccccceEEEecCCCc
Confidence 999999999999874
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=2.7e-25 Score=158.76 Aligned_cols=167 Identities=25% Similarity=0.382 Sum_probs=137.8
Q ss_pred CcEEEEEeeCCCcEEEEECC-----CCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCCeEEeecC
Q 042260 4 PSVILATASYDKTIKFWEAK-----SGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
+..+++++++|.++.+|++. .|..++.+++|...|..++.++++.+. +++.|+.+|+||+.++ ++...+.+|
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH 104 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGH 104 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEec
Confidence 45689999999999999864 467788999999999999999988765 5568999999999987 445567899
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--cCcEEEEEEccC--CCEEEEeeCCCcEEEEeCCCCcc
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--RAAVNTVVLHPN--QTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
...|++++|+++.+.++||+.|.+|++|++...+.....+. +.-|+++.|+|+ ...+++++.|++|++||+++.+.
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 99999999999999999999999999999986554322222 567999999998 67889999999999999999887
Q ss_pred eeecCcccceeEEEEEeec
Q 042260 154 SCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~ 172 (174)
...+..+.+-..++-++||
T Consensus 185 ~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred hhccccccccEEEEEECCC
Confidence 7776655555555544444
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=3.6e-25 Score=159.08 Aligned_cols=153 Identities=26% Similarity=0.488 Sum_probs=123.5
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC------------------------------------
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN------------------------------------ 46 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------ 46 (174)
.+++.|+|+|.||.+.|||.-+.+.++.++.+..-|-.++|+|+
T Consensus 65 ~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH 144 (343)
T KOG0286|consen 65 TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH 144 (343)
T ss_pred CCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCc
Confidence 46788999999999999998766555555444444444444444
Q ss_pred ------------CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeE
Q 042260 47 ------------KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQ 113 (174)
Q Consensus 47 ------------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~ 113 (174)
+.++.+++|.+.-+||++++ +....+.+|.+.|.++.+.| +++.|++|+-|+..++||+|.+.++
T Consensus 145 tgylScC~f~dD~~ilT~SGD~TCalWDie~g--~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~ 222 (343)
T KOG0286|consen 145 TGYLSCCRFLDDNHILTGSGDMTCALWDIETG--QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV 222 (343)
T ss_pred cceeEEEEEcCCCceEecCCCceEEEEEcccc--eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee
Confidence 44455555666778888776 44556789999999999999 9999999999999999999999998
Q ss_pred Eeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 114 MEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 114 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.+|. |.+.|+++.|+|++.-+++|+.|+++|+||+++.+.+..+
T Consensus 223 qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 223 QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 8885 6788999999999999999999999999999997766443
No 10
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6.7e-25 Score=173.52 Aligned_cols=154 Identities=25% Similarity=0.525 Sum_probs=135.3
Q ss_pred CCcEEEEEeeCCCcEEEEEC-CCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 3 QPSVILATASYDKTIKFWEA-KSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
.++.++++++.|+++|+||+ ..+.++.+++.|...|++++|+|.+.++++ +.|+.||+||++++ .+...+..|...
T Consensus 213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~--~~~~~l~~hs~~ 290 (456)
T KOG0266|consen 213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG--ECVRKLKGHSDG 290 (456)
T ss_pred CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC--eEEEeeeccCCc
Confidence 46779999999999999999 566889999999999999999999876654 57889999999986 566778899999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCe--eEEeecc--cC-cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV--CQMEYES--RA-AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~--~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
+.+++|++++..|++++.|+.|++||+.+.. +...+.. .. ++..+.|+|++.++++++.|+.+++||++...+..
T Consensus 291 is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 291 ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee
Confidence 9999999999999999999999999999888 4444422 22 68999999999999999999999999999999887
Q ss_pred ecC
Q 042260 156 ELG 158 (174)
Q Consensus 156 ~~~ 158 (174)
++.
T Consensus 371 ~~~ 373 (456)
T KOG0266|consen 371 TYT 373 (456)
T ss_pred eec
Confidence 764
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=6.6e-26 Score=179.72 Aligned_cols=150 Identities=28% Similarity=0.489 Sum_probs=135.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+-+-++||+|.|++.++|.......++.+.+|-+.|.++.|+|+..+++++ .|.++|+||..++. .+..+.+|...|
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V 580 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--SVRIFTGHKGPV 580 (707)
T ss_pred CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--EEEEecCCCCce
Confidence 346789999999999999999999999999999999999999999988865 68899999999884 466788999999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
.+++|+|+|+++++|+.||.|++||+..+..+..+ .|...|.++.|+.+++.|++|+.|.+|++||+....+.
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999999999999999999997766555 56788999999999999999999999999999976655
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=2.5e-24 Score=154.76 Aligned_cols=164 Identities=23% Similarity=0.348 Sum_probs=144.8
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC-CCceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
-|+|+|.|.+..+||+++|+....+..|...|.++++.| ++..+ .++-|...++||++.+ .....+.+|...|.++
T Consensus 158 ~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINsv 235 (343)
T KOG0286|consen 158 HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINSV 235 (343)
T ss_pred ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccccccceE
Confidence 377999999999999999999999999999999999999 55544 4556889999999988 5677789999999999
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
.|.|+|.-|+||+.|+++|+||+|..+.+..+.+. .+|++++|+..|++|++|..|.++.+||.-.++.+..+..+.
T Consensus 236 ~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe 315 (343)
T KOG0286|consen 236 RFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE 315 (343)
T ss_pred EEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC
Confidence 99999999999999999999999987766666653 579999999999999999999999999999999998887777
Q ss_pred ceeEEEEEeec
Q 042260 162 GLRTFLFYHQD 172 (174)
Q Consensus 162 ~~~~~~~~~~~ 172 (174)
+.++-+-..||
T Consensus 316 NRvScl~~s~D 326 (343)
T KOG0286|consen 316 NRVSCLGVSPD 326 (343)
T ss_pred CeeEEEEECCC
Confidence 77776666654
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2e-24 Score=170.79 Aligned_cols=168 Identities=28% Similarity=0.519 Sum_probs=141.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
.++..+++++.|+.+++|+..+++ ..+....|...|.+++|+|++.+++++ .|.++|+||+... ...+.++.+|..
T Consensus 169 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~ 247 (456)
T KOG0266|consen 169 PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHST 247 (456)
T ss_pred CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCC
Confidence 356779999999999999997777 666667788899999999999776654 6789999999433 245677889999
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc--ceee
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS--CSCE 156 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~ 156 (174)
.+.+++|+++++++++|+.|++|+|||+++..+...+. |..+|.+++|+++++.|++++.|+.|++||+.++. |...
T Consensus 248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 327 (456)
T KOG0266|consen 248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL 327 (456)
T ss_pred ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence 99999999999999999999999999999988887774 56799999999999999999999999999999999 4444
Q ss_pred c---CcccceeEEEEEeec
Q 042260 157 L---GLQYGLRTFLFYHQD 172 (174)
Q Consensus 157 ~---~~~~~~~~~~~~~~~ 172 (174)
+ +.+. ..+++.+||+
T Consensus 328 ~~~~~~~~-~~~~~~fsp~ 345 (456)
T KOG0266|consen 328 LSGAENSA-PVTSVQFSPN 345 (456)
T ss_pred ccCCCCCC-ceeEEEECCC
Confidence 3 2333 5677777764
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=2.7e-24 Score=151.77 Aligned_cols=155 Identities=24% Similarity=0.410 Sum_probs=124.5
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCC--------------
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSS-------------- 67 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~-------------- 67 (174)
.+++-+.|||.||++||||++.-.+.+.++ +.++|+++..+|+.. ++++-.++.|++||+....
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~ 171 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ 171 (311)
T ss_pred ecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence 357889999999999999999877666665 447899999998654 4444567889999985431
Q ss_pred ---------------------------------CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC-eeE
Q 042260 68 ---------------------------------PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQ 113 (174)
Q Consensus 68 ---------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~ 113 (174)
..++.+++.|...++.+.++|++++|+|+|.|.+++||+.... +..
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle 251 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE 251 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE
Confidence 1233456678899999999999999999999999999999876 333
Q ss_pred Eee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 114 MEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 114 ~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
... .+..-+.+++|+.++.+|++|+.|+.+++||+++++.+.++.
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 333 344568999999999999999999999999999999776653
No 15
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=160.76 Aligned_cols=158 Identities=23% Similarity=0.318 Sum_probs=136.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
.+..|+|||.|.|+|+||+.+.....+.+.|..-|.+++|+|+++.++++ .|+.|++||..+++.. -..+.+|...|.
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~-g~~l~gH~K~It 204 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI-GRALRGHKKWIT 204 (480)
T ss_pred CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc-cccccCccccee
Confidence 56689999999999999999999999999999999999999999988765 6899999999887533 455789999999
Q ss_pred EEEEee-----CCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 83 AVGFQC-----DGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 83 ~~~~~~-----~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
+++|.| ..+++++++.||.++|||+....++... .|..+|.|+.|-. ...+++|+.|++|++|+...+.+...
T Consensus 205 ~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~ 283 (480)
T KOG0271|consen 205 ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRE 283 (480)
T ss_pred EEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHh
Confidence 999976 5678999999999999999998888766 5678999999842 46789999999999999999988877
Q ss_pred cCcccce
Q 042260 157 LGLQYGL 163 (174)
Q Consensus 157 ~~~~~~~ 163 (174)
+..+.+-
T Consensus 284 lkGHahw 290 (480)
T KOG0271|consen 284 LKGHAHW 290 (480)
T ss_pred hcccchh
Confidence 7544443
No 16
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=161.45 Aligned_cols=160 Identities=24% Similarity=0.420 Sum_probs=137.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCC---------------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSP--------------- 68 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--------------- 68 (174)
+...||++|.||+++|||+..+.++..+..|..+|+++.|-.++.+..++.|++||+|+...+..
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence 45579999999999999999999999999999999999998877777777899999998653210
Q ss_pred --------------------------------------------------------------CCeEEeecCCCCEEEEEE
Q 042260 69 --------------------------------------------------------------QPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 69 --------------------------------------------------------------~~~~~~~~~~~~v~~~~~ 86 (174)
+++..+.+|...|..+.|
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF 375 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence 011123467788999999
Q ss_pred eeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC-cccce
Q 042260 87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG-LQYGL 163 (174)
Q Consensus 87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~ 163 (174)
+|++++||++|-|..|++||.++++-..+|. |-.+|..++|+.+.+.|++|+.|.++++||+++++..++++ +...+
T Consensus 376 SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 376 SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence 9999999999999999999999998887776 77899999999999999999999999999999999999987 54444
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.8e-24 Score=155.63 Aligned_cols=166 Identities=25% Similarity=0.436 Sum_probs=146.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+..|+|+++|.+|+.|++.+|-++..+..|..-|.-+..+.+|.++++++ |..+++|-..+.+ +...+..|.-.+.+
T Consensus 205 gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEc 282 (406)
T KOG0295|consen 205 GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ--CKAELREHEHPVEC 282 (406)
T ss_pred CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch--hhhhhhccccceEE
Confidence 56799999999999999999999999999988899999999999988764 6689999998873 34445678888888
Q ss_pred EEEeeC---------------CCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 84 VGFQCD---------------GNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 84 ~~~~~~---------------~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
++|-|. +.++++++.|++|++||+.++.|..++ .|..-|..++|+|.|++|+++..|+++++||
T Consensus 283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 888552 348999999999999999999999888 4678899999999999999999999999999
Q ss_pred CCCCcceeecCcccceeEEEEEeec
Q 042260 148 LTANSCSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
+++.+|.-.++++-+....+=+|.+
T Consensus 363 l~~~~cmk~~~ah~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHEHFVTSLDFHKT 387 (406)
T ss_pred eccceeeeccCCCcceeEEEecCCC
Confidence 9999999999988888888877765
No 18
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.4e-23 Score=146.06 Aligned_cols=168 Identities=23% Similarity=0.393 Sum_probs=134.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.-+++|+.|+.+.+||+++|+..+.+..|.++|+.+.|+.+...++++ -|..+++||.++....|+..+......|.
T Consensus 70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence 34458899999999999999999999999999999999999877766654 58899999999988888877777777888
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE----------------------------------------
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV---------------------------------------- 122 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v---------------------------------------- 122 (174)
++... +..|++|+.||++|.||+|.+....- ....+|
T Consensus 150 Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 150 SIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred EEEec--ccEEEeeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence 87764 45688888888888888875432100 111222
Q ss_pred ----EEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce-eEEEEEeecCC
Q 042260 123 ----NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL-RTFLFYHQDMT 174 (174)
Q Consensus 123 ----~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 174 (174)
.+++++.....+++|++||.|.+||+.......+++.++.+ ++-+-+||+|.
T Consensus 227 ~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 227 MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD 283 (307)
T ss_pred ceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence 34455555567888899999999999999999999999999 89999999873
No 19
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=1.2e-22 Score=161.32 Aligned_cols=148 Identities=21% Similarity=0.285 Sum_probs=119.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCC-------ceeEEeecCCCCeEEEEEcCCC-ceE-EEecCCcEEEEEcCCCCCCCeEEe
Q 042260 4 PSVILATASYDKTIKFWEAKSG-------RCYRTIQYPDSQVNRLEITPNK-HYL-AAAGNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~d~~i~i~d~~~~~~~~~~~~ 74 (174)
++.+|++|+.|++|++||+.++ +.+..+..|...|..++|+|.+ .++ +++.|+.|++||++++ .....+
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg--~~~~~l 164 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG--KAVEVI 164 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--eEEEEE
Confidence 4568999999999999998765 2466777888899999999974 344 4567899999999876 345566
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--CcEEEEEEccCCCEEEEee----CCCcEEEEeC
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--AAVNTVVLHPNQTELISGD----QNGNIRVWDL 148 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~----~d~~i~iwd~ 148 (174)
..|...|.+++|++++..|++++.|+.|++||+++...+..+..+ ..+..+.|.+++..+++++ .|+.|++||+
T Consensus 165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 789999999999999999999999999999999988776665432 2345778888887777644 4789999999
Q ss_pred CCCcc
Q 042260 149 TANSC 153 (174)
Q Consensus 149 ~~~~~ 153 (174)
+....
T Consensus 245 r~~~~ 249 (493)
T PTZ00421 245 RKMAS 249 (493)
T ss_pred CCCCC
Confidence 97543
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1.5e-23 Score=165.71 Aligned_cols=152 Identities=26% Similarity=0.465 Sum_probs=133.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCce---eE------EeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEe
Q 042260 5 SVILATASYDKTIKFWEAKSGRC---YR------TIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~---~~------~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~ 74 (174)
..+|+++|.|.++++|++...++ .. ....|+..|++++++|+..+++++ .|...+||+++. ......+
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~--~~l~~vL 501 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ--LRLLGVL 501 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--ceEEEEe
Confidence 45899999999999999865221 11 223578889999999999999875 688999999984 3567778
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
.+|+..+.++.|++....++|+|.|++|+||.+.+..|..+++ |...|..+.|..++..|+++++||-|++|+++++.|
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 9999999999999999999999999999999999999999997 788999999999999999999999999999999999
Q ss_pred eeecC
Q 042260 154 SCELG 158 (174)
Q Consensus 154 ~~~~~ 158 (174)
.+.+-
T Consensus 582 ~~tlD 586 (775)
T KOG0319|consen 582 EMTLD 586 (775)
T ss_pred hhhhh
Confidence 98764
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=8.9e-23 Score=161.90 Aligned_cols=152 Identities=27% Similarity=0.434 Sum_probs=128.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCC---------CC----
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSS---------SP---- 68 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~---------~~---- 68 (174)
++++++|||+.||.|||||...|-|+.++..|.+.|+.+.|+..+..+ +++-||++|.||+..- .+
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfs 439 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFS 439 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeee
Confidence 578899999999999999999999999999999999999999877654 4567999999997311 00
Q ss_pred -----------------------------CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC-eeEEeecc
Q 042260 69 -----------------------------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYES 118 (174)
Q Consensus 69 -----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~ 118 (174)
+.+-.+.+|.++|.+++|++.+..|+++|.|.+||+||+-.. ..+.++..
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i 519 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI 519 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee
Confidence 112234589999999999999999999999999999998654 34566777
Q ss_pred cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 119 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
...+..++|.|+|..|++++.||.|.+||++..-..
T Consensus 520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 888999999999999999999999999999976444
No 22
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=4e-22 Score=159.60 Aligned_cols=151 Identities=13% Similarity=0.198 Sum_probs=126.3
Q ss_pred EeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEE-EecCCcEEEEEcCCCCC------CCeEEeecCCCCE
Q 042260 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLA-AAGNPHIRLFDVNSSSP------QPVMSYDQHTNNV 81 (174)
Q Consensus 10 s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~-~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~v 81 (174)
+|+.++.+++|+..+...+..+..|...|.+++|+|. +.+++ ++.|+.|++||++++.. .+...+.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 4677889999998877788888899999999999996 45554 56789999999976421 2334567899999
Q ss_pred EEEEEeeCCCE-EEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 82 MAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 82 ~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
.+++|+|++.. +++++.|+.|++||+++......+.+...|.+++|+|++..|++++.|+.|+|||++++....++..+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99999998875 57899999999999998877766666778999999999999999999999999999999888776533
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=7.8e-23 Score=161.66 Aligned_cols=147 Identities=22% Similarity=0.472 Sum_probs=134.1
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
+++..+++|||.|++.|+|+++.......+.+|...++++.|+|...++++ ++|.++|||.+.+. .+..++.+|...
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f--SClkT~eGH~~a 549 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF--SCLKTFEGHTSA 549 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc--eeeeeecCccce
Confidence 445668999999999999999999999999999999999999998777665 58999999999877 678889999999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
|..+.|-.+|+.|++++.||.+++|++++..|..++. |..+|.+++.+|...++++|+.||.|.+|.=-+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999999999999999999999999998885 678999999999999999999999999996443
No 24
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=6.5e-23 Score=151.79 Aligned_cols=166 Identities=25% Similarity=0.470 Sum_probs=132.5
Q ss_pred EEEEeeCCCcEEEEECCCCce---eEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 7 ILATASYDKTIKFWEAKSGRC---YRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.|+||.+-+.|++|...+|.- ...+..|...|.+++|+|. +.+.+++-|+.|+|||++++..+.....+.|...|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 377888999999999887653 2345568888999999995 33444567999999999998666666668999999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCe---eEEee-cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcce--
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPV---CQMEY-ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTANSCS-- 154 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~-- 154 (174)
..+.|+..-.+|++|+.||+++|||+|+.+ ++.+| .|+.+|.++.|+|.. ..|++++.|.+|.|||+......
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 999999887799999999999999998643 34455 468999999999965 56778889999999999965542
Q ss_pred ----eecCcccceeEEEEEeec
Q 042260 155 ----CELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 155 ----~~~~~~~~~~~~~~~~~~ 172 (174)
-...++..+-|++|.||-
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqG 407 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQG 407 (440)
T ss_pred hccccccchhcCCceeEEEecc
Confidence 112366777999999973
No 25
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7.1e-23 Score=144.96 Aligned_cols=145 Identities=26% Similarity=0.469 Sum_probs=120.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
...++++|+|++||+|+...++.+.++++|...|....|+|. +.+.++++|+.+++||++... +.+ ..+.|..+++
T Consensus 117 r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~-~i~ah~~Eil 194 (311)
T KOG0277|consen 117 RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-KFM-SIEAHNSEIL 194 (311)
T ss_pred ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-cee-EEEeccceeE
Confidence 345778899999999999999999999999999999999994 334456789999999998764 223 3678999999
Q ss_pred EEEEee-CCCEEEEecCCCcEEEEeCCCCee-EEe-ecccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCC
Q 042260 83 AVGFQC-DGNWMYSGSEDGTVKIWDLRAPVC-QME-YESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 83 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~-~~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~ 151 (174)
++.|++ +.+.++||+.|+.||+||+|..+. +.. ..|.-.|..+.|+|.. ..|++++.|-++||||.+.+
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 999986 788999999999999999986442 223 3567789999999965 56789999999999999954
No 26
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.3e-22 Score=141.61 Aligned_cols=153 Identities=21% Similarity=0.352 Sum_probs=125.0
Q ss_pred CCcEEEEEeeCCCcEEEEECCC-CceeEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKS-GRCYRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+....+++++.||++++||+.. ..+++.+++|..+|.++.|++.. .++.++.|++||+|+..-+ ..+.++.+|..
T Consensus 71 ~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 71 NHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFNGHNS 148 (311)
T ss_pred CCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeecCCcc
Confidence 4456789999999999999543 45788999999999999999843 4566789999999998654 56778899999
Q ss_pred CEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCc-cee
Q 042260 80 NVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANS-CSC 155 (174)
Q Consensus 80 ~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~-~~~ 155 (174)
.|....|+| .++.++++|.|+.+++||++.+-.-..+. |...|.++.|+. +.+.|++|+.|+.||.||++.-+ -+.
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF 228 (311)
T ss_pred EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccce
Confidence 999999998 68899999999999999998754333344 445899999987 56778999999999999999754 334
Q ss_pred ec
Q 042260 156 EL 157 (174)
Q Consensus 156 ~~ 157 (174)
++
T Consensus 229 eL 230 (311)
T KOG0277|consen 229 EL 230 (311)
T ss_pred ee
Confidence 44
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.90 E-value=4.2e-23 Score=154.03 Aligned_cols=149 Identities=27% Similarity=0.489 Sum_probs=127.1
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++ .++|+|.|++|+|||....++...+.+|...|.+++|+|...+++++ .|..+++||-+++ .++.++..|...|
T Consensus 191 nDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg--~cl~tlh~HKntV 267 (464)
T KOG0284|consen 191 NDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG--SCLATLHGHKNTV 267 (464)
T ss_pred CCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc--chhhhhhhccceE
Confidence 344 37799999999999999998888889999999999999987777665 5678999999988 5566778899999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
+.+.|++++++|+|+|.|..++++|++.-+-..++. |+..+.+++|+| +.+.+.+|+.||.|..|.+....-.
T Consensus 268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc
Confidence 999999999999999999999999999654444454 678899999999 5677889999999999999844333
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.90 E-value=1.5e-23 Score=156.34 Aligned_cols=153 Identities=22% Similarity=0.418 Sum_probs=129.2
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
.++..++||+.+|.||+|+..-.. +..++. |..+|++++|+|. .+++.+++|+.|+|||..-.+...+ +.+|.-.
T Consensus 148 ~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwd 224 (464)
T KOG0284|consen 148 HNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWD 224 (464)
T ss_pred cCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--eccCCCC
Confidence 356789999999999999976543 334443 4478999999985 5567778899999999976644433 4789999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
|.+++|.|...+|++|+.|..|++||.++..|+.++ .|+..|..+.|+|+++.|+++|.|..++++|+++.+.++..+
T Consensus 225 VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r 303 (464)
T KOG0284|consen 225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR 303 (464)
T ss_pred cceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh
Confidence 999999999999999999999999999999988776 467889999999999999999999999999999877776654
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=1.5e-23 Score=154.21 Aligned_cols=155 Identities=20% Similarity=0.361 Sum_probs=127.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCC-CeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-PVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~v~ 82 (174)
+..+|++||.|.||++||+++|+++.++-.|-..|..+.|+ +|.++.++.|..+++||..++... ....+.+|...|.
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 35689999999999999999999998888887789999886 356677778999999999765421 2223558999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
.+.|+ .++|++++.|.++++|++.+..++.++. |+..|-|+.+ .++++++|++|.+||+||++.+.|+.-++..-
T Consensus 325 vVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 325 VVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred eeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 99985 5699999999999999999999888774 5667877776 68999999999999999999999986655444
Q ss_pred ce
Q 042260 162 GL 163 (174)
Q Consensus 162 ~~ 163 (174)
++
T Consensus 401 eL 402 (499)
T KOG0281|consen 401 EL 402 (499)
T ss_pred Hh
Confidence 43
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.2e-22 Score=139.86 Aligned_cols=150 Identities=21% Similarity=0.412 Sum_probs=129.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.+.+|++.|++||+|++..|.+++++..|...|.+++.+.++..++ +++|..+.+||.++++ ....+.+|..+|.
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~aqVN 105 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK--VDRRFRGHLAQVN 105 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe--eeeecccccceee
Confidence 577899999999999999999999999999999999998887766555 5678899999999984 4566889999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCC--eeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.++|+.+...+++|+-|..+++||.|+. +++..+ +....|.++.+ ++..+++|+.||++|.||++.+....+.
T Consensus 106 tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 106 TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhh
Confidence 9999999999999999999999998764 344444 34677888887 5678999999999999999999877664
No 31
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=1.6e-22 Score=153.40 Aligned_cols=168 Identities=23% Similarity=0.452 Sum_probs=140.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
+++.-++|+|.|+.+|+||+++|+++..+... ..+.++.|+|++ .+++++.|+.|+.||+++++ .+..|..|.+.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~ 344 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGA 344 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhh
Confidence 56778999999999999999999999998753 468899999976 35667789999999999984 45568889999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE--------------------------------Ee-------------
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ--------------------------------ME------------- 115 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--------------------------------~~------------- 115 (174)
+..+.|.++|+.+++.+.|+.++||+.+.+..+ ..
T Consensus 345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence 999999999999999999999999997653210 00
Q ss_pred -ec-c--cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEEEeecC
Q 042260 116 -YE-S--RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDM 173 (174)
Q Consensus 116 -~~-~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (174)
|. + .+--..+.|+|+|.+|++|..||.+.+||-++.+....+.....++.-+-+||-.
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 10 0 1124578999999999999999999999999999999998888899999999864
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=5.7e-22 Score=143.03 Aligned_cols=166 Identities=21% Similarity=0.339 Sum_probs=139.8
Q ss_pred CcEEEEEeeCCCcEEEEECCC-CceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 4 PSVILATASYDKTIKFWEAKS-GRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
++.+|||||.|..|.+|++.. -+.....+.|.++|..+.|.+++..+ +++.|..++.||.+++ +....+..|..-+
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG--~~~rk~k~h~~~v 135 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG--KRIRKHKGHTSFV 135 (338)
T ss_pred CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc--eeeehhcccccee
Confidence 677899999999999999543 34567778999999999999987655 4567889999999998 4566677888888
Q ss_pred EEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 82 MAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 82 ~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
.++.-.. ...++.|++.|+++++||+|+..++++++.+.++.++.|..++..+++|+-|+.|++||++...+++.++..
T Consensus 136 Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh 215 (338)
T KOG0265|consen 136 NSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH 215 (338)
T ss_pred eecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecc
Confidence 8887433 345788899999999999999999999988999999999999999999999999999999999999988766
Q ss_pred cceeEEEEEee
Q 042260 161 YGLRTFLFYHQ 171 (174)
Q Consensus 161 ~~~~~~~~~~~ 171 (174)
.+.+.-++..+
T Consensus 216 ~DtIt~lsls~ 226 (338)
T KOG0265|consen 216 ADTITGLSLSR 226 (338)
T ss_pred cCceeeEEecc
Confidence 66666655443
No 33
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=6e-21 Score=151.58 Aligned_cols=153 Identities=12% Similarity=0.195 Sum_probs=123.7
Q ss_pred EEEEEeeCCCcEEEEECCCCcee-------------EEeecCCCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCCC--
Q 042260 6 VILATASYDKTIKFWEAKSGRCY-------------RTIQYPDSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSSP-- 68 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~~-- 68 (174)
..+++++.+.....|+...+..+ ..+..|...|.+++|+| ++.+++ ++.|+.|++||+..+..
T Consensus 33 ~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~ 112 (493)
T PTZ00421 33 SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ 112 (493)
T ss_pred CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc
Confidence 45678888888888876544322 13556788899999999 555554 56789999999976532
Q ss_pred ---CCeEEeecCCCCEEEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcE
Q 042260 69 ---QPVMSYDQHTNNVMAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNI 143 (174)
Q Consensus 69 ---~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i 143 (174)
.++..+.+|...|.+++|+|++ +.|++++.|+.|+|||+++......+. +...|.+++|+|+++.|++++.|++|
T Consensus 113 ~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~I 192 (493)
T PTZ00421 113 NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192 (493)
T ss_pred ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEE
Confidence 3456678899999999999975 699999999999999999887776664 56789999999999999999999999
Q ss_pred EEEeCCCCcceeecC
Q 042260 144 RVWDLTANSCSCELG 158 (174)
Q Consensus 144 ~iwd~~~~~~~~~~~ 158 (174)
++||++++....++.
T Consensus 193 rIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 193 NIIDPRDGTIVSSVE 207 (493)
T ss_pred EEEECCCCcEEEEEe
Confidence 999999988777664
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.8e-22 Score=145.74 Aligned_cols=145 Identities=23% Similarity=0.510 Sum_probs=129.4
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC----------C-----ceE-EEecCCcEEEEEcCC
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN----------K-----HYL-AAAGNPHIRLFDVNS 65 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~~-~~~~d~~i~i~d~~~ 65 (174)
.+++.+++++|.|.+|++|-+.++++...++.|+-+|.+++|.|. + .++ +++.|+.||+||+.+
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 478999999999999999999999999999999889999998753 1 233 445799999999998
Q ss_pred CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISGDQNGNIR 144 (174)
Q Consensus 66 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~ 144 (174)
+ .++.++.+|.+-|..++|+|.|++|+++.+|+++++||++...|.+++.. ..-++++.|+.+..++++|+-|.+++
T Consensus 324 g--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 324 G--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK 401 (406)
T ss_pred C--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence 8 67888999999999999999999999999999999999999999988764 56789999999999999999999999
Q ss_pred EEeC
Q 042260 145 VWDL 148 (174)
Q Consensus 145 iwd~ 148 (174)
+|.-
T Consensus 402 vwEc 405 (406)
T KOG0295|consen 402 VWEC 405 (406)
T ss_pred eeec
Confidence 9964
No 35
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=3.5e-23 Score=151.30 Aligned_cols=154 Identities=23% Similarity=0.444 Sum_probs=135.6
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEee--------cCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQ--------YPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMS 73 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~ 73 (174)
+++++|++||-||.|.+||..+|+....++ .++.+|.++.|+.+..+++++ .|+.|++|.++++ .++..
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG--~ClRr 300 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG--QCLRR 300 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc--hHHHH
Confidence 478899999999999999999887654432 356789999999998888765 6899999999998 45555
Q ss_pred ee-cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 74 YD-QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 74 ~~-~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
++ .|...|+++.|+.++..+.+++.|.++|+.-++++++.+.+. |.+-|+...|.++|..++++++||+|++|+.++.
T Consensus 301 FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 301 FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence 55 799999999999999999999999999999999999988885 5677999999999999999999999999999999
Q ss_pred cceeecC
Q 042260 152 SCSCELG 158 (174)
Q Consensus 152 ~~~~~~~ 158 (174)
.|+..+.
T Consensus 381 eC~~Tfk 387 (508)
T KOG0275|consen 381 ECLSTFK 387 (508)
T ss_pred hhhhhcc
Confidence 9998764
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=1.5e-20 Score=137.42 Aligned_cols=153 Identities=33% Similarity=0.654 Sum_probs=130.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++..+++++.|+.+++||+.+++.+..+..+...+.++.|++++.+++++. ++.+++||+++. .....+..|...+.
T Consensus 62 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~ 139 (289)
T cd00200 62 DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGHTDWVN 139 (289)
T ss_pred CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEeccCCCcEE
Confidence 345789999999999999999888888888887899999999888887776 899999999865 33445567888999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
++.++++++++++++.|+.+++||++.......+. +...+.++.++|+++.+++++.|+.|++||++......++.
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh
Confidence 99999999999999889999999998766655554 44589999999999999999999999999999877776663
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=1.9e-20 Score=136.87 Aligned_cols=153 Identities=35% Similarity=0.641 Sum_probs=131.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+.++++++.|+.+++||+++++....+..+...+.++.|+|++.+++++. ++.+++||++.++ ....+..|...+.+
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~ 182 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNS 182 (289)
T ss_pred CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--cceeEecCccccce
Confidence 46788888899999999998888888887888899999999888888776 8999999998663 34445678889999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
+.|+++++.+++++.|+.+++||++.......+ .+...+.++.++|++..+++++.|+.|++||+..+.....+..
T Consensus 183 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 999999999999999999999999987777666 5667899999999988888888899999999998777766653
No 38
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=1.5e-20 Score=150.67 Aligned_cols=150 Identities=17% Similarity=0.307 Sum_probs=114.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCc--------eeEEeecCCCCeEEEEEcCCCce-EE-EecCCcEEEEEcCCCCCCCeEEe
Q 042260 5 SVILATASYDKTIKFWEAKSGR--------CYRTIQYPDSQVNRLEITPNKHY-LA-AAGNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~d~~i~i~d~~~~~~~~~~~~ 74 (174)
+.+|+|||.|++|++||+.++. .+..+..|...|.+++|+|.+.. ++ ++.|+.|++||+++++. ...+
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i 164 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQI 164 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEE
Confidence 5689999999999999987642 23456678888999999998764 33 45789999999987642 3333
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEE-----EEEEccCCCEEEEeeCCC----cEE
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVN-----TVVLHPNQTELISGDQNG----NIR 144 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~-----~~~~~~~~~~l~s~~~d~----~i~ 144 (174)
. |...+.+++|+++|.+|++++.|+.|+|||+++.....++. |...+. ...|++++..+++++.|+ +|+
T Consensus 165 ~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 165 N-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred e-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 3 55789999999999999999999999999999988776664 333332 233558888999887764 799
Q ss_pred EEeCCC-Ccceeec
Q 042260 145 VWDLTA-NSCSCEL 157 (174)
Q Consensus 145 iwd~~~-~~~~~~~ 157 (174)
|||+++ .......
T Consensus 244 LWDlr~~~~pl~~~ 257 (568)
T PTZ00420 244 LWDLKNTTSALVTM 257 (568)
T ss_pred EEECCCCCCceEEE
Confidence 999996 4444443
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.88 E-value=1.4e-21 Score=148.04 Aligned_cols=143 Identities=24% Similarity=0.435 Sum_probs=130.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC---------c-eEEEecCCcEEEEEcCCCCCCCeEEe
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK---------H-YLAAAGNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---------~-~~~~~~d~~i~i~d~~~~~~~~~~~~ 74 (174)
+.+|+|+|.|+|+|||....+.+.+.+..|...|..+.|+|.+ . ++.++.|..+++||+..+ .++..+
T Consensus 371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f 448 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTL 448 (524)
T ss_pred CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEee
Confidence 6789999999999999999999999999998899999999864 2 345567899999999877 667778
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
..|+.+|.+++|+|+|+++++|+.||.|.+|+++..+..+.+.....|..++|+.+++.|..+-+|+.+++-|++
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 899999999999999999999999999999999999998888888889999999999999988899999999886
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.4e-22 Score=154.48 Aligned_cols=148 Identities=25% Similarity=0.537 Sum_probs=129.1
Q ss_pred cEEEEEeeCCCcEEEEECCC-CceeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASYDKTIKFWEAKS-GRCYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
..+++|+|.|-+||+||.+. ..+.+++.+|...|-.++|+|. +.+.+++-|+++|+|.+.++ .+..++++|...|
T Consensus 109 ~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~--~~nfTl~gHekGV 186 (794)
T KOG0276|consen 109 LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP--HPNFTLEGHEKGV 186 (794)
T ss_pred CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC--CCceeeeccccCc
Confidence 34789999999999999876 4778999999999999999994 45566678999999999655 6677888999999
Q ss_pred EEEEEeeCCC--EEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 82 MAVGFQCDGN--WMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 82 ~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
.++.|.+.|. +++||+.|..++|||..+..|+.+++ |...|+.+.|+|.=+.+++|++||++|||+-.+-+..
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence 9999987543 89999999999999999998888875 6788999999999999999999999999998876543
No 41
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.5e-22 Score=157.75 Aligned_cols=151 Identities=21% Similarity=0.362 Sum_probs=129.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCC--------------------------------C-------------------------
Q 042260 3 QPSVILATASYDKTIKFWEAKS--------------------------------G------------------------- 25 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~--------------------------------~------------------------- 25 (174)
.+|++||+||.|+.||||.+.. .
T Consensus 277 ~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~ 356 (712)
T KOG0283|consen 277 HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFV 356 (712)
T ss_pred CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcccc
Confidence 4789999999999999998644 0
Q ss_pred ---ceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCCCc
Q 042260 26 ---RCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGT 101 (174)
Q Consensus 26 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~ 101 (174)
++++.+.+|.+.|.++.|+.++.+|.++-|.++|+|++... .++..+ .|.+-|+|++|+| |.++|++|+-||.
T Consensus 357 f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~--~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 357 FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK--ECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc--ceeeEE-ecCCeeEEEEecccCCCcEeecccccc
Confidence 12344556667899999999999999999999999999765 555555 4889999999998 7889999999999
Q ss_pred EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 102 VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 102 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
||||++...+++...+.+.-|++++|.|+|+..+.|+-+|.+++|+........+
T Consensus 434 vRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 434 VRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred eEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 9999999988888778888999999999999999999999999999997655433
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=2.8e-21 Score=154.17 Aligned_cols=151 Identities=28% Similarity=0.500 Sum_probs=128.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
.+.++++|+.|+++|+||..+|+|.+++.+|...+.++...+. .++.++.|.++++|+++++ ..+..+.+|...|.+
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~--~~l~l~~~h~~~V~~ 336 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNG--ACLNLLRGHTGPVNC 336 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCc--ceEEEeccccccEEE
Confidence 3668999999999999999999999999999888888876442 2333467999999999876 456666679999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC-cceeecCcc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN-SCSCELGLQ 160 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~ 160 (174)
+..+ +.++++|+.|++|++||+++.++...+. |..+|.++.+.+. +.+++|+.|++|++||++++ .|...+..+
T Consensus 337 v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h 412 (537)
T KOG0274|consen 337 VQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH 412 (537)
T ss_pred EEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC
Confidence 9986 8899999999999999999999988774 6788999988655 89999999999999999999 888776533
No 43
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.88 E-value=7.1e-21 Score=144.34 Aligned_cols=165 Identities=19% Similarity=0.369 Sum_probs=142.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
.+.+|++++.|+++.+||..+|+..+-+..|..+..++.|-.+..+...+.|+.|+++.+... .|..++.+|.++|.+
T Consensus 287 ~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 287 KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNA 364 (524)
T ss_pred CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC--CcceeeecccCceEE
Confidence 466899999999999999999999998988888778899988777777788999999998655 567778899999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCC---------EEEEeeCCCcEEEEeCCCCcc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQT---------ELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~---------~l~s~~~d~~i~iwd~~~~~~ 153 (174)
+.|+|.+.+|+|+|.|++++||.+....+...+. |...|..+.|+|++. .+++++.|++|++||+..+.+
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce
Confidence 9999999999999999999999998877666554 456788888887663 588999999999999999999
Q ss_pred eeec-CcccceeEEEEEe
Q 042260 154 SCEL-GLQYGLRTFLFYH 170 (174)
Q Consensus 154 ~~~~-~~~~~~~~~~~~~ 170 (174)
.+.+ .++..|.+..|.|
T Consensus 445 i~~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 445 IHTLMKHQEPVYSVAFSP 462 (524)
T ss_pred eEeeccCCCceEEEEecC
Confidence 9997 6777777777764
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=5.9e-21 Score=135.21 Aligned_cols=143 Identities=23% Similarity=0.421 Sum_probs=122.6
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
+.|++++.|++||+||.++|..++++... .+|.++.++++|.++..+....|++||..+-+ .+..++ ...+|.+..
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~--~lKs~k-~P~nV~SAS 231 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG--LLKSYK-MPCNVESAS 231 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecCceeEEecccccc--ceeecc-Ccccccccc
Confidence 34667799999999999999999999765 57999999999999999988899999997653 333333 357788989
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
..|+...+++|++|+.++.||..+..-+..+ .+..+|.|+.|+|+|...++|++||+||||.+..++
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999999999999999999887655443 577899999999999999999999999999998654
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.87 E-value=2.8e-21 Score=142.61 Aligned_cols=156 Identities=27% Similarity=0.430 Sum_probs=135.1
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
..++++++.|+.||.||++.++.++.+.+|-+.|.+++.+|.-..+++ +.|..+|+||+++. ..+..+.+|+..|..
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~ 282 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVAS 282 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc--ceEEEecCCCCccee
Confidence 357999999999999999999999999999999999999997665554 56888999999987 557778899999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG 162 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 162 (174)
+.+.+-.-.++|||.|++|++||++..+...+. .++..+.+++.+|..+.+++++.| .|+-|++-.+.....+..+..
T Consensus 283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA 361 (460)
T ss_pred EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc
Confidence 999987778999999999999999998887766 456789999999999999999988 599999998887766554443
Q ss_pred e
Q 042260 163 L 163 (174)
Q Consensus 163 ~ 163 (174)
.
T Consensus 362 i 362 (460)
T KOG0285|consen 362 I 362 (460)
T ss_pred e
Confidence 3
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=4.1e-20 Score=155.16 Aligned_cols=143 Identities=18% Similarity=0.398 Sum_probs=117.1
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+..|++++.|++|++||+.+++.+..+..|...|.+++|+| ++.+++ ++.|+.+++||++++. ....+.. ...+.
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~-~~~v~ 621 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTIKT-KANIC 621 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEEec-CCCeE
Confidence 45799999999999999999999999989999999999997 555554 5578899999998763 3444443 36788
Q ss_pred EEEEe-eCCCEEEEecCCCcEEEEeCCCCe-eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 83 AVGFQ-CDGNWMYSGSEDGTVKIWDLRAPV-CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 83 ~~~~~-~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
++.|. +++..+++|+.||.|++||++... ....+ .+...|.++.|. ++..+++++.|++|++||++..
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 99985 479999999999999999998754 23333 466789999997 6788999999999999999853
No 47
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.3e-22 Score=160.34 Aligned_cols=151 Identities=27% Similarity=0.510 Sum_probs=135.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+.+|++|+.+|+||+||+++++.++.+.+|...+..+.|+|-+.+++++ .|..+++||.+-. .+...+..|...+..
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~--Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK--GCSHTYKSHTRVVDV 159 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc--CceeeecCCcceeEE
Confidence 4578999999999999999999999999999999999999999888654 5788999999855 456677889999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
+.|+|+|++++.|++|..++|||...++...+|. +...+..+.|+|..-.+++|+.|++|++||+++.....+.
T Consensus 160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence 9999999999999999999999999999888887 6788999999999999999999999999999987655444
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.87 E-value=5.2e-22 Score=150.68 Aligned_cols=146 Identities=20% Similarity=0.414 Sum_probs=126.3
Q ss_pred CcEEEEEeeCCCcEEEEECCC-CceeEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 4 PSVILATASYDKTIKFWEAKS-GRCYRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.+++|+++|.|+.|+||++.. +++++++.+|..+|.++.|++++. +++++-|+.+++||.++++. ...+. ....+
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~--~~~f~-~~~~~ 302 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV--LSRFH-LDKVP 302 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE--EEEEe-cCCCc
Confidence 578999999999999999876 899999999999999999999876 45567799999999999843 33332 23557
Q ss_pred EEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 82 MAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 82 ~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
.++.|.|++ +.|+.|+.|+.|+-||+|+++.+.++.+ -+.|+++.|-+++..+++.+.|++++||+.+.+.
T Consensus 303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v 375 (503)
T KOG0282|consen 303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV 375 (503)
T ss_pred eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence 788899987 8999999999999999999998877754 4789999999999999999999999999999764
No 49
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=9.2e-21 Score=142.80 Aligned_cols=168 Identities=24% Similarity=0.359 Sum_probs=126.9
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCce-------eEEeecCCCCeEEEEEcCCCc-eE-EEecCCcEEEEEcCCCCCCCeEE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRC-------YRTIQYPDSQVNRLEITPNKH-YL-AAAGNPHIRLFDVNSSSPQPVMS 73 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~~~ 73 (174)
+....|++|+.|++|.+||+..... ...+..|...|..++|++... ++ +.+.|+.+.|||.|++..++...
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~ 267 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS 267 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccc
Confidence 3456789999999999999865432 344567888999999998543 33 44567789999999654455566
Q ss_pred eecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe-eEEee-cccCcEEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 042260 74 YDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV-CQMEY-ESRAAVNTVVLHPN-QTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 74 ~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~ 149 (174)
..+|...+.+++|+| ++..|||||.|++|++||+|... +..++ .|+..|..+.|+|. .+.|++++.|+.+.+||+.
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 678999999999998 56678999999999999999754 33444 56788999999995 5678899999999999999
Q ss_pred CCcceee-cCcccceeEEEEEe
Q 042260 150 ANSCSCE-LGLQYGLRTFLFYH 170 (174)
Q Consensus 150 ~~~~~~~-~~~~~~~~~~~~~~ 170 (174)
.-...+. .....++--++|-|
T Consensus 348 ~ig~eq~~eda~dgppEllF~H 369 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIH 369 (422)
T ss_pred ccccccChhhhccCCcceeEEe
Confidence 6433322 23444445555555
No 50
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4e-21 Score=150.45 Aligned_cols=156 Identities=25% Similarity=0.444 Sum_probs=129.3
Q ss_pred CCcEEEEEeeCCCcEEEEECCCC--ceeEEeecCCCCeEEEEE-cCCCceEEEe-cCCcEEEEEcCCCCCCCeE------
Q 042260 3 QPSVILATASYDKTIKFWEAKSG--RCYRTIQYPDSQVNRLEI-TPNKHYLAAA-GNPHIRLFDVNSSSPQPVM------ 72 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~------ 72 (174)
..+..|+|+|.|-+|++|+...+ -|...+..|...|.+++. .+++.+++++ -|+.|.+||++++......
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 34567999999999999998776 567778889899999999 6666666654 5899999999865221111
Q ss_pred --Ee-ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 73 --SY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 73 --~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
.+ .+++..+-+++.++.|..|++|+.++.+++||.++.+.+..+ .|...|.++..+++|+.++++|+||+|++||+
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 11 267888999999999999999999999999999987655444 67789999999999999999999999999999
Q ss_pred CCCcceeecC
Q 042260 149 TANSCSCELG 158 (174)
Q Consensus 149 ~~~~~~~~~~ 158 (174)
...+|...+.
T Consensus 243 gqQrCl~T~~ 252 (735)
T KOG0308|consen 243 GQQRCLATYI 252 (735)
T ss_pred cccceeeeEE
Confidence 9999997754
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.2e-20 Score=152.33 Aligned_cols=167 Identities=22% Similarity=0.380 Sum_probs=135.0
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCC---CC--------------
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSS---SP-------------- 68 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~---~~-------------- 68 (174)
-|+|+|.|.|||||+..+++++....+|...|-+..|+|...+++ ++-|.+||+||+..- ..
T Consensus 107 WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~ 186 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG 186 (1202)
T ss_pred eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence 488999999999999999999999999999999999999666555 567999999997311 00
Q ss_pred --------CC--eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE---EeecccCcEEEEEEccCCCEEE
Q 042260 69 --------QP--VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ---MEYESRAAVNTVVLHPNQTELI 135 (174)
Q Consensus 69 --------~~--~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~ 135 (174)
.. ...+++|...|..++|.|.--.|++|+.|+.|++|.+...+.- .-..|..+|.++.|+|..+.++
T Consensus 187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred chhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence 11 1235689999999999998899999999999999998754321 1125678899999999999999
Q ss_pred EeeCCCcEEEEeCCCCcceeecCcccceeEEEEEeecC
Q 042260 136 SGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDM 173 (174)
Q Consensus 136 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (174)
+.|+|++||+||++...+++.++.-.+.-=++-.||.|
T Consensus 267 SnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l 304 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL 304 (1202)
T ss_pred ecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc
Confidence 99999999999999999998886444444445556554
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.7e-20 Score=142.61 Aligned_cols=151 Identities=19% Similarity=0.346 Sum_probs=128.4
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCC-ceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 2 AQPSVILATASYDKTIKFWEAKSG-RCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
....++++|||+||+||+||.+.. ..+.++. |+.+|..+.+-|.|.++++++...+|+||+-++.... ..+..|...
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll-~~~~~H~Kt 240 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL-TSMFNHNKT 240 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh-hhhhcccce
Confidence 345679999999999999999887 5566664 7788999999999999999988999999998664332 223348899
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
|+|+++..++..|++|+-|+.|++||+...+.+..+..+++|.+++++|++..++.|..||.+.+=+...++..
T Consensus 241 VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred EEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999998777655544433
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.9e-20 Score=132.07 Aligned_cols=154 Identities=26% Similarity=0.493 Sum_probs=127.8
Q ss_pred cEEEEEeeCCCcEEEEECCCC---ceeEEee-cCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 5 SVILATASYDKTIKFWEAKSG---RCYRTIQ-YPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~---~~~~~~~-~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+.+|+|||.|+.||+|+...+ .+...+. .|...|..++|+|.+.+++++ -|.++-||.-..++..+..++++|.+
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN 106 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence 458999999999999998753 3333332 467789999999999988765 58899999988888888999999999
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCC---eeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC-CC--c
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP---VCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT-AN--S 152 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~---~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~ 152 (174)
.|.+++|+++|++|||+++|..|=||.+... .|...+ .|.+.|..+.|||....|++++.|.+|++|.-. .. .
T Consensus 107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~ 186 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWE 186 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCee
Confidence 9999999999999999999999999998732 333333 567789999999999999999999999999998 44 3
Q ss_pred ceeecC
Q 042260 153 CSCELG 158 (174)
Q Consensus 153 ~~~~~~ 158 (174)
|.+++.
T Consensus 187 c~~tl~ 192 (312)
T KOG0645|consen 187 CVQTLD 192 (312)
T ss_pred EEEEec
Confidence 455543
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=1.7e-20 Score=135.49 Aligned_cols=165 Identities=19% Similarity=0.427 Sum_probs=138.2
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCce-EEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
..++.||+.|+++|+||.+..+.+..+. ...+++++.|...+.. ++++-|+.|++||++.+ .....+.+|...|+.
T Consensus 145 ~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~--d~~~~lsGh~DtIt~ 221 (338)
T KOG0265|consen 145 PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN--DGLYTLSGHADTITG 221 (338)
T ss_pred CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccC--cceEEeecccCceee
Confidence 4578999999999999999988887775 3467999999987654 55567899999999876 556778899999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCC----CeeEEeecc-----cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRA----PVCQMEYES-----RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
+..++.|.++.+-+-|..+++||++. ..++..+.. .-.-..++|+|+++.+.+|+.|+.+.+||.....++
T Consensus 222 lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 222 LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL 301 (338)
T ss_pred EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEE
Confidence 99999999999999999999999975 233443422 223567899999999999999999999999999999
Q ss_pred eecCcccceeEEEEEeec
Q 042260 155 CELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~ 172 (174)
+.++..+.-.-=+.|||+
T Consensus 302 yklpGh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 302 YKLPGHYGSVNEVDFHPT 319 (338)
T ss_pred EEcCCcceeEEEeeecCC
Confidence 999988877777777775
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.86 E-value=7.7e-22 Score=145.30 Aligned_cols=145 Identities=23% Similarity=0.461 Sum_probs=123.0
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 86 (174)
.+++|..|.||++||.++-.+...+.+|.+.|.++.+... .+++++.|.++++||+++++ ++.++-+|...|..+.|
T Consensus 209 kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge--~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLRF 285 (499)
T ss_pred hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCc--hhhHHhhhcceeEEEEE
Confidence 5889999999999999999999999999999999998643 44555678899999999984 45566689999999999
Q ss_pred eeCCCEEEEecCCCcEEEEeCCCCeeE----EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 87 QCDGNWMYSGSEDGTVKIWDLRAPVCQ----MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
+ ..+++|++.|.++++||+..+.-+ ....|...|+.+.| +++++++++.|.+|++|++.+.+|+..+.
T Consensus 286 ~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~ 357 (499)
T KOG0281|consen 286 S--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLN 357 (499)
T ss_pred e--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhh
Confidence 6 578999999999999999887522 11256788999998 55799999999999999999999998764
No 56
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.3e-21 Score=154.16 Aligned_cols=147 Identities=20% Similarity=0.424 Sum_probs=121.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
..+|+|||.||+||+||++..+...++......|.++.|+|. +..+ ++..+|.+.+||++... .+...+.+|++.|.
T Consensus 146 p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 146 PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-RCEKKLTAHNGPVL 224 (839)
T ss_pred ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-hHHHHhhcccCceE
Confidence 458999999999999999998888888877778999999984 3344 44567789999998764 45566789999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCC--eeEEeecccCcEEEEEEccCCCE-EEEee--CCCcEEEEeCCCCc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTE-LISGD--QNGNIRVWDLTANS 152 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~s~~--~d~~i~iwd~~~~~ 152 (174)
++.|+|++.+||||+.|++|+|||+..+ ....+++...++.++.|-|..+. |++++ .|-.|++||++.+=
T Consensus 225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 9999999999999999999999999754 34566777899999999997665 56544 46789999999863
No 57
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.1e-20 Score=140.55 Aligned_cols=166 Identities=20% Similarity=0.305 Sum_probs=138.0
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEE-EecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
++++.++++|+.|+.+++||+.+......+..|...|.+.+++|.+. +++ ++.|+.||+||.++.. ..+..+ .|..
T Consensus 120 ~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~el-nhg~ 197 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL-NHGC 197 (487)
T ss_pred ccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEe-cCCC
Confidence 46788999999999999999999887668888999999999999654 444 4579999999999875 445555 4788
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
+|..+.+-|.|..|++++.. .|++||+-++.. .... .|.-.|+|+.+.-++..|++|+-|+.|++||+.+-+..+.+
T Consensus 198 pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 198 PVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred ceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 99999999999999998754 899999975433 2223 47778999999999999999999999999999999999888
Q ss_pred CcccceeEEEEEe
Q 042260 158 GLQYGLRTFLFYH 170 (174)
Q Consensus 158 ~~~~~~~~~~~~~ 170 (174)
..+..+......+
T Consensus 277 ~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 277 KYPGPVLSIAVSP 289 (487)
T ss_pred ecccceeeEEecC
Confidence 8777777766655
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=3.3e-21 Score=140.12 Aligned_cols=154 Identities=22% Similarity=0.424 Sum_probs=125.5
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCCCceEEEecCC-cEEEEEcCCCCCCC-eEEeecCCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNSSSPQP-VMSYDQHTNN 80 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~-~~~~~~~~~~ 80 (174)
..+|++|++|++||+||.......+.++ ....+|.++.|+|.|.++..+.|. .+|+||+++-+.-. ...-+.|...
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 5689999999999999976543332222 233579999999999998877654 68999998753211 1123568899
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
|+++.+++.+++.+|++.||.|++||=-+.+|+.++. .+..|.+..|..+++++++.+.|..+++|.+.+++++...
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999999999988888887764 3578999999999999999999999999999999999775
Q ss_pred C
Q 042260 158 G 158 (174)
Q Consensus 158 ~ 158 (174)
+
T Consensus 344 t 344 (430)
T KOG0640|consen 344 T 344 (430)
T ss_pred e
Confidence 4
No 59
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=3.1e-20 Score=140.00 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=128.8
Q ss_pred CCCCcEEEEEeeCCCcEEEEECCCCcee----------EEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCC-
Q 042260 1 MAQPSVILATASYDKTIKFWEAKSGRCY----------RTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSS- 67 (174)
Q Consensus 1 ~~~~~~~l~s~s~D~~v~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~- 67 (174)
|+|...+++|.+..+.+.|||....... ..+.+|...-.+++|++. +.+++++.|..+++||+....
T Consensus 133 mPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 133 MPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecccccc
Confidence 8899999999999999999997543221 245667666778999985 556777788899999997543
Q ss_pred ----CCCeEEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCC--CeeEEee-cccCcEEEEEEcc-CCCEEEEee
Q 042260 68 ----PQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRA--PVCQMEY-ESRAAVNTVVLHP-NQTELISGD 138 (174)
Q Consensus 68 ----~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~--~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~ 138 (174)
..+...+.+|...|..++|.+ +...|++++.|+.+.|||+|+ .++.... .|..++++++|+| ++..||+||
T Consensus 213 ~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S 292 (422)
T KOG0264|consen 213 EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS 292 (422)
T ss_pred CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc
Confidence 234556789999999999997 566899999999999999995 3333333 4578899999999 566788999
Q ss_pred CCCcEEEEeCCCC-cceeecCcccceeEEEE
Q 042260 139 QNGNIRVWDLTAN-SCSCELGLQYGLRTFLF 168 (174)
Q Consensus 139 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~ 168 (174)
.|++|++||+|+- .+...++.+...+--+.
T Consensus 293 ~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 293 ADKTVALWDLRNLNKPLHTFEGHEDEVFQVE 323 (422)
T ss_pred CCCcEEEeechhcccCceeccCCCcceEEEE
Confidence 9999999999984 46666654444433333
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.86 E-value=2.5e-19 Score=150.49 Aligned_cols=147 Identities=24% Similarity=0.363 Sum_probs=118.2
Q ss_pred CCcEEEEEeeCCCcEEEEECCCC----c----eeEEeecCCCCeEEEEEcCC-CceEE-EecCCcEEEEEcCCCCCCCeE
Q 042260 3 QPSVILATASYDKTIKFWEAKSG----R----CYRTIQYPDSQVNRLEITPN-KHYLA-AAGNPHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~~~-~~~d~~i~i~d~~~~~~~~~~ 72 (174)
.++.+|+||+.|++|++||.+.. . ....+. +...+.+++|++. +..++ ++.|+.+++||+.++ ..+.
T Consensus 493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--~~~~ 569 (793)
T PLN00181 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS--QLVT 569 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC--eEEE
Confidence 35678999999999999997531 1 122222 3456889999874 44454 456899999999876 3455
Q ss_pred EeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEc-cCCCEEEEeeCCCcEEEEeCCC
Q 042260 73 SYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLH-PNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.+..|...|.+++|++ ++.+|++|+.|+.|++||+++..+...+.....+.++.|+ +++..+++|+.|+.|++||+++
T Consensus 570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 6778999999999996 7899999999999999999988877777777789999995 5688999999999999999997
Q ss_pred Cc
Q 042260 151 NS 152 (174)
Q Consensus 151 ~~ 152 (174)
..
T Consensus 650 ~~ 651 (793)
T PLN00181 650 PK 651 (793)
T ss_pred CC
Confidence 65
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.86 E-value=7.4e-20 Score=140.50 Aligned_cols=160 Identities=18% Similarity=0.341 Sum_probs=122.1
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCce--eEEeecCCCCeEEEEEcCCCceEEEecCC-----cEEEEEcCCC---------
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRC--YRTIQYPDSQVNRLEITPNKHYLAAAGNP-----HIRLFDVNSS--------- 66 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~--------- 66 (174)
+.+-++++|...|+|||||....+. ..+++.-.++|.+++|+.+++.+++.+++ .+.+||--+.
T Consensus 69 PsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr 148 (603)
T KOG0318|consen 69 PSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSR 148 (603)
T ss_pred CCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccce
Confidence 4577899999999999999765333 23333345677788888777766655432 2455653210
Q ss_pred ----------C--------------------CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260 67 ----------S--------------------PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY 116 (174)
Q Consensus 67 ----------~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~ 116 (174)
+ .+.......|..-|.++.|+|+|.+|+|.+.||.+.+||=.+...+..+
T Consensus 149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l 228 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGEL 228 (603)
T ss_pred eEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEe
Confidence 0 0112233467788999999999999999999999999999998888777
Q ss_pred c----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260 117 E----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG 162 (174)
Q Consensus 117 ~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 162 (174)
+ |...|.++.|+|++..+++++.|++++|||+.+.++..++++...
T Consensus 229 ~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 229 EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred cCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 5 567899999999999999999999999999999999888765544
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=9e-21 Score=152.97 Aligned_cols=144 Identities=20% Similarity=0.453 Sum_probs=130.4
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecC-CcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN-PHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
...++++-..|.|.+||.+-+.++..|..|+++|.+++|+|++.++++++| ..|++|...+. .++.++.+|..-|..
T Consensus 21 rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rclftL~GHlDYVRt 98 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCLFTLLGHLDYVRT 98 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc--eehhhhccccceeEE
Confidence 346889999999999999999999999999999999999999998887765 56999999766 566778899999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
+.|++.-=+|+++|.|.+|+||+..+..|+... .|..-|-|..|+|.+..++++|-|.+||+||+.-
T Consensus 99 ~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 99 VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence 999988889999999999999999999888766 4667899999999999999999999999999984
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=2e-20 Score=149.33 Aligned_cols=150 Identities=24% Similarity=0.497 Sum_probs=129.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
...+++||.|.+|++|+++++.++..+..|..+|.++..+ .+.+++++.|+.|++||+.+. +++..+.+|...|.++
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~--~cl~sl~gH~~~V~sl 377 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTG--KCLKSLSGHTGRVYSL 377 (537)
T ss_pred CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhc--eeeeeecCCcceEEEE
Confidence 4567889999999999999999999999899999999998 456667778999999999866 6778888999999999
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCC-eeEEeecccC-cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYESRA-AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
.+... ..+++|+.|+.|++||+++. .|+.++.++. .+..+. ..++.|++++.|++|++||.+++.|.+.+..+
T Consensus 378 ~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 378 IVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred EecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccCceeeeeccC
Confidence 87654 89999999999999999999 8888876554 444444 47899999999999999999999999888653
No 64
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=4.4e-20 Score=133.52 Aligned_cols=146 Identities=21% Similarity=0.285 Sum_probs=119.5
Q ss_pred CCcEEEEEeeCCCcEEEEECCC-CceeE-EeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKS-GRCYR-TIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+...+++.||+|++||+|+++. |..+. ....++++|.+++|+.++..++ ++.|+.+++||+.+++.. ....|..
T Consensus 38 ~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~---~v~~Hd~ 114 (347)
T KOG0647|consen 38 QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS---QVAAHDA 114 (347)
T ss_pred ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee---eeeeccc
Confidence 3456788999999999999987 44443 3345788999999999886654 557899999999988533 3457999
Q ss_pred CEEEEEEeeCCC--EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 80 NVMAVGFQCDGN--WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 80 ~v~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
.|..+.|.+... .|+|||.|.++++||+|.+..+.+...+.++.++.. -...++.+..++.|.+|+++++.-
T Consensus 115 pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 115 PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred ceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcc
Confidence 999999988666 899999999999999999999998888888887665 456777888899999999987643
No 65
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.7e-21 Score=152.99 Aligned_cols=146 Identities=21% Similarity=0.472 Sum_probs=121.8
Q ss_pred cEEEEEeeCCCcEEEEECCC---CceeEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 5 SVILATASYDKTIKFWEAKS---GRCYRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+.+|||++..|.|.+||+.. .+.+..+..|...++.++|++.. .+++++.|+.||+||++.... ..++.+...
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~nSE 177 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSNSE 177 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--cccccccch
Confidence 45899999999999999876 56677888999999999999854 345566799999999988743 334455677
Q ss_pred CEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe-eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 80 NVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV-CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 80 ~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
.|..+.|+| .+..|+++.+.|.+.+||+|.+. +...+ -|.++|.++-|+|++..||+||.|+.|+|||+..++
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 899999997 57789999999999999999865 33333 467899999999999999999999999999999653
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.7e-20 Score=144.95 Aligned_cols=160 Identities=23% Similarity=0.330 Sum_probs=132.0
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+.+..|+.|-.+|.|.|||.++.+.++.+.. |...|.+++|+ ...+..++.++.|..+|++..+.... .+.+|...|
T Consensus 227 ~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeV 304 (484)
T KOG0305|consen 227 PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEV 304 (484)
T ss_pred CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhh-hhhccccee
Confidence 4678999999999999999999999999988 88899999998 33445556789999999988754333 477899999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccC-CCEEEEe--eCCCcEEEEeCCCCcceeec
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPN-QTELISG--DQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~s~--~~d~~i~iwd~~~~~~~~~~ 157 (174)
+.+.|+++++++|+|+.|+.+.|||...+.....+ +|..+|.+++|+|. .+.||+| +.|+.|++||..++.+....
T Consensus 305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v 384 (484)
T KOG0305|consen 305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV 384 (484)
T ss_pred eeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence 99999999999999999999999999777666655 67889999999995 5677775 46999999999998766544
Q ss_pred Cccccee
Q 042260 158 GLQYGLR 164 (174)
Q Consensus 158 ~~~~~~~ 164 (174)
-..+-++
T Consensus 385 dtgsQVc 391 (484)
T KOG0305|consen 385 DTGSQVC 391 (484)
T ss_pred ccCCcee
Confidence 3333333
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=1.7e-19 Score=128.35 Aligned_cols=154 Identities=27% Similarity=0.494 Sum_probs=120.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCC----------------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSS---------------- 66 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~---------------- 66 (174)
.+.++++++.|++|++||.+.+++...+......+. +.|+|++..++.+ .|+.|.+.|.+..
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~ 154 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEIS 154 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeee
Confidence 356799999999999999999998877765443333 3455555544433 3444444443311
Q ss_pred -----------------------CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcE
Q 042260 67 -----------------------SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAV 122 (174)
Q Consensus 67 -----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v 122 (174)
.++++...++|...+.++.|+|+|++||+|+.|..+-+||+....|...+. ...+|
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV 234 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPV 234 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCce
Confidence 234555667899999999999999999999999999999999888887774 57899
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
..+.|+.++++||+|++|-.|-|=+++++....+++
T Consensus 235 RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 235 RTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred EEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 999999999999999999999998888888776643
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.6e-19 Score=129.23 Aligned_cols=153 Identities=18% Similarity=0.368 Sum_probs=123.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEee---cCCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYD---QHTNN 80 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~---~~~~~ 80 (174)
+..++|+|.|++||+||++..++..-+.....++ .+|.|+|.+++.+. ...|++||++.-...|..++. ....+
T Consensus 112 ~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~e 189 (311)
T KOG1446|consen 112 DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAE 189 (311)
T ss_pred CCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccc
Confidence 4578999999999999999888877776554444 77999999988764 448999999876545544443 33678
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCc----EEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA----VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
...+.|+++|+.+.-+...+.+++.|--.+....++..... ..+.+|.|++++|++|+.||+|.+|+++++..+..
T Consensus 190 w~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 190 WTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred eeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 89999999999999999999999999888777766654322 25889999999999999999999999999988766
Q ss_pred cCc
Q 042260 157 LGL 159 (174)
Q Consensus 157 ~~~ 159 (174)
++.
T Consensus 270 ~~~ 272 (311)
T KOG1446|consen 270 LRG 272 (311)
T ss_pred ecC
Confidence 543
No 69
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=2.5e-19 Score=142.51 Aligned_cols=154 Identities=17% Similarity=0.380 Sum_probs=137.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecC--CcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN--PHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
..+|++|=..|...+|++-.-..++.+...+.+|..++|+..|..++-+.. +++-+|++.++ ..+.+.++|-..+.
T Consensus 277 t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~~~i~ 354 (893)
T KOG0291|consen 277 TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHSDRIT 354 (893)
T ss_pred ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeecccccccee
Confidence 467889999999999999999999999888889999999999998876644 58999999887 45667789999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
+++++|||.+++||++||.|+|||..++-|..+|. |.+.|..+.|+..++.+++.+-||+||.||+.+.++-..++.|
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P 433 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP 433 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC
Confidence 99999999999999999999999999999999994 6788999999999999999999999999999998877666544
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=135.81 Aligned_cols=149 Identities=22% Similarity=0.375 Sum_probs=126.8
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
.+.+|++++.|++..+.|.++|..+..+.. .+-.+++.+|+|+|.++.++ .|+.++|||+.++. ....+++|.++
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~ 391 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGP 391 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCc
Confidence 467899999999999999999998776654 23457899999999988765 68899999997763 56678899999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
|..++|+.+|.+++++++|+.|++||+|..+...++. ...+++++.|.+.|.+++.+++|=+|.+++-.+.+..
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT 467 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence 9999999999999999999999999999877665554 3457999999999999999999888888887766544
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.84 E-value=3.2e-19 Score=127.32 Aligned_cols=150 Identities=21% Similarity=0.373 Sum_probs=126.7
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecC------CcEEEEEcCCCC-----CCCeE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN------PHIRLFDVNSSS-----PQPVM 72 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~-----~~~~~ 72 (174)
++..++||+.|.++++||+++|+++..++.. .+|..+.|++.+.++..+.| +.+.++|++... ..|.+
T Consensus 63 ~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 63 DSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred CcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 4567999999999999999999999999855 57999999999887766543 457899997332 34566
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe--ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME--YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
....+.+++..+.|.+.+++|++|.+||.|..||.++...... ..|...|+++.++|+..++++++.|.+.++||+++
T Consensus 142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 6777889999999999999999999999999999998643322 24667999999999999999999999999999998
Q ss_pred Ccce
Q 042260 151 NSCS 154 (174)
Q Consensus 151 ~~~~ 154 (174)
-.+.
T Consensus 222 l~v~ 225 (327)
T KOG0643|consen 222 LEVL 225 (327)
T ss_pred eeeE
Confidence 7655
No 72
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.84 E-value=6.6e-19 Score=130.12 Aligned_cols=166 Identities=19% Similarity=0.335 Sum_probs=139.0
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.+||||+.+|.|+||+..++.....+......+.-+.|+|.+.++++ +.|+.+-+|.+..+ .....+.+|..++.
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~--~~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ--ALCKVMSGHNSPCT 194 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--ceeeEecCCCCCcc
Confidence 5789999999999999999999998888766677999999998887655 47888999999875 33455788999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCee--------------------------------------------------
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-------------------------------------------------- 112 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-------------------------------------------------- 112 (174)
+-.|.|+|+.++++..||+|++||.++..+
T Consensus 195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred cccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence 999999999999999999999999765321
Q ss_pred ----------------------------------------------EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260 113 ----------------------------------------------QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW 146 (174)
Q Consensus 113 ----------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 146 (174)
.+.+.+..+|..+.|.+ ..+|++++.||.|++|
T Consensus 275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQW 353 (399)
T ss_pred CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEee
Confidence 00123456688889988 7889999999999999
Q ss_pred eCCCCcceeec-CcccceeEEEEEeec
Q 042260 147 DLTANSCSCEL-GLQYGLRTFLFYHQD 172 (174)
Q Consensus 147 d~~~~~~~~~~-~~~~~~~~~~~~~~~ 172 (174)
|.++++++... .+++.+..|++.||.
T Consensus 354 DaRtG~l~~~y~GH~~~Il~f~ls~~~ 380 (399)
T KOG0296|consen 354 DARTGQLKFTYTGHQMGILDFALSPQK 380 (399)
T ss_pred eccccceEEEEecCchheeEEEEcCCC
Confidence 99999999997 588888899888764
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.2e-20 Score=133.18 Aligned_cols=146 Identities=27% Similarity=0.486 Sum_probs=127.2
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
++-++|+|+|++..+||+++|+.+..+.+|+...+.++-+|...+++++ .|.+.|+||.+ +....+..+++|+..|++
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-eaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-EAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch-hhcceeeeecccccceeE
Confidence 5568999999999999999999999999999999999999988887765 57789999998 445667779999999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCC-eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
..|.-+ ..+++|+.|.+|++||++.- ....++...++++.++++..++.++.-..+..||+||++-.+
T Consensus 363 ~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 363 VVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred EEEecC-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 999864 46899999999999999763 345667778899999999988889988899999999998654
No 74
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=8.6e-20 Score=131.97 Aligned_cols=148 Identities=23% Similarity=0.446 Sum_probs=120.0
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC---CceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN---KHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+..++.++|.|.++|+||.++-+....++.+ ..|.+.+++|- ..+++++ .+.++++.|+.++. ....+.+|+.
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--~sH~LsGHr~ 189 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--FSHTLSGHRD 189 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--ceeeeccccC
Confidence 4457899999999999999999999888865 46999899984 3455555 35679999999884 4566789999
Q ss_pred CEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCe-eEEe---------------ecccCcEEEEEEccCCCEEEEeeCCCc
Q 042260 80 NVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPV-CQME---------------YESRAAVNTVVLHPNQTELISGDQNGN 142 (174)
Q Consensus 80 ~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~-~~~~---------------~~~~~~v~~~~~~~~~~~l~s~~~d~~ 142 (174)
.|.++.|+|... .++||+.||.||+||+|... |-.. ..+...++.++|.-++..+++.+.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 999999998766 58899999999999998641 1111 123456899999999999999999999
Q ss_pred EEEEeCCCCcce
Q 042260 143 IRVWDLTANSCS 154 (174)
Q Consensus 143 i~iwd~~~~~~~ 154 (174)
+++|++.+++-.
T Consensus 270 ~r~wn~~~G~nt 281 (397)
T KOG4283|consen 270 IRVWNMESGRNT 281 (397)
T ss_pred eEEeecccCccc
Confidence 999999988644
No 75
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.9e-19 Score=129.46 Aligned_cols=146 Identities=16% Similarity=0.316 Sum_probs=124.1
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
+..|+.+++||++++||+...+....++ +..++.+++|.+....++++.|+.|+.+|+.++... ....|...+.++
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~---~igth~~~i~ci 100 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED---QIGTHDEGIRCI 100 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCcce---eeccCCCceEEE
Confidence 4457778899999999998886666665 667899999999888888889999999999886432 345689999999
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
.+.+-...+++|+.|++|++||.|...+..++.....|.++.. .++.|+.|+.|..+.+||+++.....|
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q 170 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQ 170 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhh
Confidence 9998888999999999999999998777777777778888776 678899999999999999998766553
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.6e-19 Score=139.62 Aligned_cols=148 Identities=26% Similarity=0.494 Sum_probs=126.7
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCc--eeEEe--------e-cCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCC
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGR--CYRTI--------Q-YPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQ 69 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~--~~~~~--------~-~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~ 69 (174)
|+...++||||-|+.|++||++++. .+.++ . ++...|.+++.++.+.++++++ .+.+++||.++. .
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~--~ 204 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--K 204 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc--c
Confidence 5677889999999999999999872 33332 1 4556799999999998877664 567999999887 4
Q ss_pred CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 70 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
.+..+.+|+.+|..+-.+++|+.++++|+||+|++||++.++|+.++. |...|.++..+|+=..|.+|+.||.|..=|+
T Consensus 205 kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 205 KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 566678999999999999999999999999999999999999998875 4566999999998889999999999999999
Q ss_pred CCC
Q 042260 149 TAN 151 (174)
Q Consensus 149 ~~~ 151 (174)
++.
T Consensus 285 ~n~ 287 (735)
T KOG0308|consen 285 RNP 287 (735)
T ss_pred CCc
Confidence 984
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.83 E-value=5e-19 Score=131.33 Aligned_cols=154 Identities=15% Similarity=0.347 Sum_probs=122.9
Q ss_pred CCcEEEEEeeCCCcEEEEECCC-------------------------CceeEEeecCCCCeEEEEEcCCCceEEEecCCc
Q 042260 3 QPSVILATASYDKTIKFWEAKS-------------------------GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH 57 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~ 57 (174)
.++..+++||+|.+|++|+.++ +.++-.+.+|..+|..+.|.+....+.++.|.+
T Consensus 203 ~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHT 282 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHT 282 (423)
T ss_pred CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccce
Confidence 4567899999999999999321 123455667888999999999877888889999
Q ss_pred EEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe---eEEee-cccCcEEEEEEccCCC-
Q 042260 58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV---CQMEY-ESRAAVNTVVLHPNQT- 132 (174)
Q Consensus 58 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~- 132 (174)
|+.||+.+++....+ . -...+.++.+.+..++|++|+.|..+++||.|.+. +..++ .|..-|.++.++|...
T Consensus 283 Ik~WDletg~~~~~~--~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~ 359 (423)
T KOG0313|consen 283 IKVWDLETGGLKSTL--T-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF 359 (423)
T ss_pred EEEEEeecccceeee--e-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce
Confidence 999999988543332 2 34678999999999999999999999999998753 23333 5677899999999655
Q ss_pred EEEEeeCCCcEEEEeCCCCc-ceeecCc
Q 042260 133 ELISGDQNGNIRVWDLTANS-CSCELGL 159 (174)
Q Consensus 133 ~l~s~~~d~~i~iwd~~~~~-~~~~~~~ 159 (174)
.|++|+.|+++++||+++.. -.|++..
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcceeecc
Confidence 57899999999999999876 6676643
No 78
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.83 E-value=1.8e-19 Score=141.99 Aligned_cols=147 Identities=21% Similarity=0.397 Sum_probs=125.7
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
..++|||+|.|+++| +.+++..+...|...|+.+..-|.+.++.++.|..||+|... ..+.++.+|+.-|.+++
T Consensus 113 ~~~iSgSWD~TakvW--~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~----~~l~tf~gHtD~VRgL~ 186 (745)
T KOG0301|consen 113 GTLISGSWDSTAKVW--RIGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG----TLLKTFSGHTDCVRGLA 186 (745)
T ss_pred CceEecccccceEEe--cchhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCC----chhhhhccchhheeeeE
Confidence 348999999999999 456777788999999999999999999999999999999873 34566789999999999
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
+-++ ..|+++++||.|++|++........+.|..-|.++...+++..++++++|++++||+.. .|.+.+++|.
T Consensus 187 vl~~-~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt 259 (745)
T KOG0301|consen 187 VLDD-SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT 259 (745)
T ss_pred EecC-CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc
Confidence 8765 35899999999999999665555555677889999988899999999999999999998 7887777665
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2.2e-19 Score=129.96 Aligned_cols=135 Identities=23% Similarity=0.402 Sum_probs=111.4
Q ss_pred cCCCCeEEEEEcCC-CceE-EEecCCcEEEEEcCCC-CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260 33 YPDSQVNRLEITPN-KHYL-AAAGNPHIRLFDVNSS-SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 33 ~~~~~v~~~~~~~~-~~~~-~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~ 109 (174)
.++..|..++|+|. ..++ +++.|+++|+|+++.. ...+ .....|.+++++++|+.+|..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 35667999999994 4455 5678999999999764 3333 44557899999999999999999999999999999999
Q ss_pred CeeEEeecccCcEEEEEEccCCC--EEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEE
Q 042260 110 PVCQMEYESRAAVNTVVLHPNQT--ELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLF 168 (174)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 168 (174)
......--|..+|.++.|-+..+ .|++||.|++|++||.+...-..++.+|..+-++=.
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv 164 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV 164 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc
Confidence 87766667888999999987665 899999999999999999888888777776654433
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.83 E-value=6.5e-19 Score=132.74 Aligned_cols=149 Identities=24% Similarity=0.399 Sum_probs=124.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
...+++++.|..|++|......+......|+.+|+.+..+|.|.++.++ .|+..-+.|++++.......-+...-.+++
T Consensus 273 ~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts 352 (506)
T KOG0289|consen 273 LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTS 352 (506)
T ss_pred hhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEE
Confidence 4467899999999999988888888888999999999999999887655 567788888888754333322223345889
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
.+|+|||..|++|..|+.++|||+.++.....| .|..+|..+.|+.||=.+++++.|+.|++||++.-+-
T Consensus 353 ~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 353 AAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred eeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc
Confidence 999999999999999999999999988876666 4678999999999999999999999999999997553
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.9e-18 Score=119.66 Aligned_cols=158 Identities=24% Similarity=0.410 Sum_probs=123.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCce-----eEEeecCCCCeEEEEEcCC----CceEEEecCCcEEEEEcCCCCCCCeEE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRC-----YRTIQYPDSQVNRLEITPN----KHYLAAAGNPHIRLFDVNSSSPQPVMS 73 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~ 73 (174)
.++.+|+|||+|++|++-..+...+ -..+..|++-|..++|-.+ +.++++++.+..+||--.-+.-++...
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 4788999999999999987654332 2456678889999999642 456666554444554443333366777
Q ss_pred eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--------cCcEEEEEEccCCCEEEEeeCCCcEEE
Q 042260 74 YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--------RAAVNTVVLHPNQTELISGDQNGNIRV 145 (174)
Q Consensus 74 ~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~s~~~d~~i~i 145 (174)
+.+|++.+.++ ++-++-+|++|+.|.+||+||++-..++.++.. .+.|.++++.|.++.|++|-.|....+
T Consensus 179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 88999999886 455789999999999999999999888877632 257999999999999999999999999
Q ss_pred EeCCCCcceeecCccc
Q 042260 146 WDLTANSCSCELGLQY 161 (174)
Q Consensus 146 wd~~~~~~~~~~~~~~ 161 (174)
||++-++..+.+-...
T Consensus 258 ydirg~r~iq~f~phs 273 (350)
T KOG0641|consen 258 YDIRGGRMIQRFHPHS 273 (350)
T ss_pred EEeeCCceeeeeCCCc
Confidence 9999999888764333
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=6e-19 Score=141.32 Aligned_cols=149 Identities=16% Similarity=0.394 Sum_probs=121.1
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+.+|+|+|.|+|||+|++...+|+..|. |...|++++|+|. ..++.++-|+.+|||++...+ +..+..-..-|+
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lIT 455 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWNDLRDLIT 455 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeehhhhhhhe
Confidence 4589999999999999999999999997 6678999999993 445666789999999997653 333444458899
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec---------ccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCCCc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---------SRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~ 152 (174)
+++|.|+|+..+.|+-+|.+++|+.+..+.+..++ ....|+.+.|.|... .|++.+.|..|||+|.+...
T Consensus 456 Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~ 535 (712)
T KOG0283|consen 456 AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD 535 (712)
T ss_pred eEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence 99999999999999999999999998766543321 123799999998655 48888999999999997766
Q ss_pred ceeec
Q 042260 153 CSCEL 157 (174)
Q Consensus 153 ~~~~~ 157 (174)
.++++
T Consensus 536 lv~Kf 540 (712)
T KOG0283|consen 536 LVHKF 540 (712)
T ss_pred hhhhh
Confidence 55554
No 83
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=131.30 Aligned_cols=161 Identities=21% Similarity=0.416 Sum_probs=129.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEc-------CCCCCCCeEEe
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDV-------NSSSPQPVMSY 74 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~-------~~~~~~~~~~~ 74 (174)
+++.+|+.|.--|.+++|.+.+|..+..+..|-..|+++.|+.++..+++ +.|+.+.+|++ ++....+...+
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 46777777779999999999999999888888888999999998877655 56889999986 23355777888
Q ss_pred ecCCCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCeeEE--------------------------------------
Q 042260 75 DQHTNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVCQM-------------------------------------- 114 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~-------------------------------------- 114 (174)
..|.-.|+++...+. ..+++|.|.|.++++||+.......
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 999999999987654 4579999999999999975422100
Q ss_pred -------------------e-eccc--CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260 115 -------------------E-YESR--AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL 163 (174)
Q Consensus 115 -------------------~-~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 163 (174)
. ..+. .+|.|++++.+++.|++|+.||+|++||+...+|...+....++
T Consensus 251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp 321 (476)
T KOG0646|consen 251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP 321 (476)
T ss_pred cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccc
Confidence 0 0122 37999999999999999999999999999999998776633333
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.81 E-value=5.6e-19 Score=135.63 Aligned_cols=154 Identities=22% Similarity=0.401 Sum_probs=117.5
Q ss_pred cEEEEEeeCCCcEEEEECCCCce-eEEeec-----CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEE-eec
Q 042260 5 SVILATASYDKTIKFWEAKSGRC-YRTIQY-----PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMS-YDQ 76 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~-~~~~~~-----~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~-~~~ 76 (174)
...++|+|.||++|+||+++.+. ...++. ....++.+.|++++++++++ .||.|.+||.......+... -++
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A 360 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA 360 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence 44688999999999999887653 333332 23357899999999988765 79999999986544333332 356
Q ss_pred CCC--CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe-eEEee---cccCcEEEEEEccCCCEEEEeeC------CCcEE
Q 042260 77 HTN--NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV-CQMEY---ESRAAVNTVVLHPNQTELISGDQ------NGNIR 144 (174)
Q Consensus 77 ~~~--~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~---~~~~~v~~~~~~~~~~~l~s~~~------d~~i~ 144 (174)
|.. .++++.|+.+|++|++-+.|+++++||++..+ +...+ ...-+-..++|+|+...|++|++ .|++.
T Consensus 361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEE
Confidence 776 89999999999999999999999999999754 22222 22345678999999999998753 35699
Q ss_pred EEeCCCCcceeecC
Q 042260 145 VWDLTANSCSCELG 158 (174)
Q Consensus 145 iwd~~~~~~~~~~~ 158 (174)
+||..+-..++++.
T Consensus 441 f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 441 FFDRMTLDTVYKID 454 (641)
T ss_pred EEeccceeeEEEec
Confidence 99988887777754
No 85
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.81 E-value=6.2e-18 Score=125.00 Aligned_cols=153 Identities=17% Similarity=0.348 Sum_probs=132.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
...+++|||.|-...+|+..+|+.+..+.+|...|.++.|+.++.++++++ ++.+++|+..++..... +...-..+.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~--~~~e~~die 152 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK--LDQEVEDIE 152 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE--eecccCceE
Confidence 567899999999999999999999999999999999999999999999874 88999999988754333 334557788
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCC-eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
-+.|+|.+..|++|+.||.+-+|.+.+. .+..-..+..++++=.|.|+|+.++++..||+|++||..+++-.+++.
T Consensus 153 Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 153 WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred EEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence 9999999999999999999999999884 444444678899999999999999999999999999999987665543
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.81 E-value=6.8e-19 Score=128.17 Aligned_cols=156 Identities=22% Similarity=0.452 Sum_probs=127.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCC------------------CceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEc
Q 042260 3 QPSVILATASYDKTIKFWEAKS------------------GRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDV 63 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~ 63 (174)
.++.+++|||.|.+|||.|++. ...++++..|..+|+.+.|+|...++++ +.|+.+++||.
T Consensus 122 ~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDf 201 (430)
T KOG0640|consen 122 PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDF 201 (430)
T ss_pred CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEec
Confidence 4688999999999999999861 1346777778889999999998777665 46889999999
Q ss_pred CCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee----cccCcEEEEEEccCCCEEEEeeC
Q 042260 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 64 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~ 139 (174)
.....+...+.-.....+.++.|.|.|.+++.|..-..+++||+++.+|-..- ++...|+++.++++++.-++|+.
T Consensus 202 sK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 202 SKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred ccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence 65433332222234578999999999999999999999999999987664332 35678999999999999999999
Q ss_pred CCcEEEEeCCCCcceeecC
Q 042260 140 NGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 140 d~~i~iwd~~~~~~~~~~~ 158 (174)
||.|+|||=-..+|+..+.
T Consensus 282 DG~IklwDGVS~rCv~t~~ 300 (430)
T KOG0640|consen 282 DGAIKLWDGVSNRCVRTIG 300 (430)
T ss_pred CCcEEeeccccHHHHHHHH
Confidence 9999999999999997763
No 87
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.2e-18 Score=120.55 Aligned_cols=147 Identities=20% Similarity=0.397 Sum_probs=126.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCC--CceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCC-CCCCCeEEeecCC
Q 042260 3 QPSVILATASYDKTIKFWEAKS--GRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNS-SSPQPVMSYDQHT 78 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~ 78 (174)
+.+++|++||.|.++-||.-.. .+++..+.+|+..|.+++|+++|.+|+++ -|..+=||.+.. .+..+...++.|.
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 4678999999999999997554 36788899999999999999999999875 577899998863 4556677788999
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCC-C--CeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLR-A--PVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-~--~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
..|..+.|+|...+|+++|.|.+|++|+-. . -.++.++. +...|.+++|+|.|..+++++.|++|+||-..
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 999999999999999999999999999876 2 34555664 45689999999999999999999999999966
No 88
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.3e-20 Score=145.25 Aligned_cols=166 Identities=27% Similarity=0.476 Sum_probs=141.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
.+..+++|+.|..+.+|.......+-++.+|+.+|.++.|+....+++++ .++.||+||+... +.+.++.+|..++.
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--k~vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--KIVRTLTGHLLNIT 116 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--hhhhhhhccccCcc
Confidence 35678999999999999988888888899999999999999987777665 6789999999866 44567789999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
.+.|+|-+.++++|+.|..+++||++.--|.+.+. +...+..+.|.|+|..+++|++|.++++||...++..-++....
T Consensus 117 sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e 196 (825)
T KOG0267|consen 117 SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE 196 (825)
T ss_pred eeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc
Confidence 99999999999999999999999999666666665 55678999999999999999999999999999998887766555
Q ss_pred ceeEEEEEee
Q 042260 162 GLRTFLFYHQ 171 (174)
Q Consensus 162 ~~~~~~~~~~ 171 (174)
.....+=+|+
T Consensus 197 ~~v~sle~hp 206 (825)
T KOG0267|consen 197 GKVQSLEFHP 206 (825)
T ss_pred ccccccccCc
Confidence 5555554554
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.81 E-value=2.6e-20 Score=139.31 Aligned_cols=157 Identities=25% Similarity=0.445 Sum_probs=133.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCce-EEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+..|++|+.|..|++|++..++ .+.++.+..+.++.+.|.+++.. ++++.|+.+++|++... ....++.+|..+|
T Consensus 187 sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~--r~~~TLsGHtdkV 264 (459)
T KOG0288|consen 187 SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL--RLRHTLSGHTDKV 264 (459)
T ss_pred cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch--hhhhhhcccccce
Confidence 4579999999999999987766 45666677788999999988765 55567888999999766 4455677899999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
+++.|......+++|+.|.++++||+.+..|..+....+.+++|+.. ...+++|..|++||+||++...+.++.+++.
T Consensus 265 t~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg 342 (459)
T KOG0288|consen 265 TAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG 342 (459)
T ss_pred eeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc
Confidence 99999877767999999999999999999999988888889999986 5778999999999999999999999988777
Q ss_pred ceeE
Q 042260 162 GLRT 165 (174)
Q Consensus 162 ~~~~ 165 (174)
.+-+
T Consensus 343 ~vtS 346 (459)
T KOG0288|consen 343 RVTS 346 (459)
T ss_pred ceee
Confidence 5433
No 90
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.81 E-value=6.3e-18 Score=130.04 Aligned_cols=148 Identities=21% Similarity=0.383 Sum_probs=122.7
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEE-eecCCCCEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMS-YDQHTNNVMAV 84 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~-~~~~~~~v~~~ 84 (174)
.++|||.|.+|.+|+--.-+-..++..|...|+++.|+|+|.++++ +.|+++.+||-.+++....+. ..+|.+.|-++
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfal 241 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFAL 241 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEE
Confidence 4899999999999986666667778888889999999999987765 579999999998875332222 34899999999
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCeeEEe--------------------------------------------ecccC
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQME--------------------------------------------YESRA 120 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~--------------------------------------------~~~~~ 120 (174)
.|+|+++.|+|++.|.++||||+.+.+++.+ ..|..
T Consensus 242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK 321 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK 321 (603)
T ss_pred EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc
Confidence 9999999999999999999999865432111 12445
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 121 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
.|+++..+|++..|++|+.||.|.-||+..+.+.
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 7999999999999999999999999999987654
No 91
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.80 E-value=2.2e-18 Score=127.94 Aligned_cols=148 Identities=22% Similarity=0.432 Sum_probs=124.8
Q ss_pred CcEEEEEeeCCCcEEEEECCCCcee----EEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCC------------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCY----RTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSS------------ 66 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~------------ 66 (174)
..+.++++|.|.++++|..+.++.. ..-++|...|.+++..+++..++ ++.|..++||+....
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 3457999999999999998877643 22347888999999988877655 568999999993211
Q ss_pred -----------CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE
Q 042260 67 -----------SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI 135 (174)
Q Consensus 67 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 135 (174)
...++..+.+|+..|.++.|.+ ...+++++.|++|+.||+.+.....++..+...+++..+|....|+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA 316 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence 1245667889999999999987 7789999999999999999998888888889999999999999999
Q ss_pred EeeCCCcEEEEeCCCCc
Q 042260 136 SGDQNGNIRVWDLTANS 152 (174)
Q Consensus 136 s~~~d~~i~iwd~~~~~ 152 (174)
+|+.|..||+||.+++.
T Consensus 317 ~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGD 333 (423)
T ss_pred ecCCCCceeecCCCCCC
Confidence 99999999999999863
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.7e-18 Score=121.86 Aligned_cols=145 Identities=20% Similarity=0.337 Sum_probs=122.8
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEEe--cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAA--GNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++..|++++.|-++++||..+|+.+.++..+...+..+.|... ...+.++ .|..||..++.++ +.+.-+.+|...
T Consensus 25 ~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kylRYF~GH~~~ 102 (311)
T KOG1446|consen 25 DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYLRYFPGHKKR 102 (311)
T ss_pred CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC--ceEEEcCCCCce
Confidence 5678899999999999999999999999988777888888754 4445444 4788999999887 557778999999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
|..++.+|-+..+++++.|++|++||+|...|+..+....+ ..++|.|+|=.+|++...+.|+|||++.-
T Consensus 103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 99999999999999999999999999998888776654433 45689999998888887779999999964
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.79 E-value=1.5e-18 Score=133.28 Aligned_cols=117 Identities=20% Similarity=0.394 Sum_probs=89.3
Q ss_pred CCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEE----eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260 36 SQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMS----YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 36 ~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~ 109 (174)
..+++-+|+|.+ .++.++.|+++||||++..+.+.... ..+-+-.+..++|+++|++||+|+.||.|.+||.++
T Consensus 269 a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~ 348 (641)
T KOG0772|consen 269 AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS 348 (641)
T ss_pred eeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence 356677788853 46777889999999997654332221 123345788999999999999999999999999865
Q ss_pred CeeE--Eee----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 110 PVCQ--MEY----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 110 ~~~~--~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
..+. ..+ .....|.++.|+++|++|++=+.|.++++||++...
T Consensus 349 ~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 349 RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 3321 111 123579999999999999999999999999999753
No 94
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=9.3e-18 Score=126.68 Aligned_cols=146 Identities=21% Similarity=0.370 Sum_probs=118.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc--eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH--YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
-..+|||||.|.||++||+.+|++..++..|..+|.++.|+|... ++.++.|+++++.|.+...... ..+. -.+.|
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~-~~wk-~~g~V 332 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG-KEWK-FDGEV 332 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC-ceEE-eccce
Confidence 356899999999999999999999999998999999999999643 4556679999999998532211 2222 35789
Q ss_pred EEEEEeeC-CCEEEEecCCCcEEEEeCCCC-eeEEeec-ccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCC
Q 042260 82 MAVGFQCD-GNWMYSGSEDGTVKIWDLRAP-VCQMEYE-SRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 82 ~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~ 151 (174)
..++|.+. ...++.+..||.|+-+|+|.+ +++.+.. |..+|.++++++.- .++++++.|+.|++|++...
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 99999985 446777889999999999986 6666664 56789999999854 56788999999999999853
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.79 E-value=5.8e-18 Score=133.66 Aligned_cols=144 Identities=24% Similarity=0.446 Sum_probs=123.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
+..++|||.|++||+|. .++.+.++.+|..-|+++++-+++.+++++.|+.|++|++. + ..+..+.+|++-+-++
T Consensus 151 e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-g--e~l~~~~ghtn~vYsi 225 (745)
T KOG0301|consen 151 ENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-G--EVLLEMHGHTNFVYSI 225 (745)
T ss_pred CCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-C--ceeeeeeccceEEEEE
Confidence 34789999999999995 47889999999999999999999999999999999999994 3 4567788999999999
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccC-cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
....++..|+++++|++++||+.. .|...+.++. .|.++.+-+++. +++|++||.||+|-.+..+...+
T Consensus 226 s~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~As~ 295 (745)
T KOG0301|consen 226 SMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKASD 295 (745)
T ss_pred EecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccccCCH
Confidence 988889999999999999999988 5555666554 789999988877 77888999999999986665543
No 96
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=8.3e-18 Score=124.94 Aligned_cols=168 Identities=20% Similarity=0.303 Sum_probs=125.2
Q ss_pred CcEEEEEeeCCCcEEEEECCC----------------CceeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCC
Q 042260 4 PSVILATASYDKTIKFWEAKS----------------GRCYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNS 65 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~ 65 (174)
++.++++-+..|.|+|||+.. .+++.++..|...=.+++|+|. |.++.+---..|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 567889999999999999742 2356777777777789999994 3333222234689999877
Q ss_pred CCCCC-eEEeecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCC---eeEEeecccCcEEEEEEccCCCEEEEeeCC
Q 042260 66 SSPQP-VMSYDQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAP---VCQMEYESRAAVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 66 ~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 140 (174)
+.+.. ...+..|+..|..++|+|. ...|++||-||+|+|||+|.. .++.+-.+..-|+.|.|+...++|++|+.|
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 65432 1224569999999999984 568999999999999999976 455555677889999999988899999999
Q ss_pred CcEEEEeCCCCcc---eeecCcccceeEEEEEee
Q 042260 141 GNIRVWDLTANSC---SCELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 141 ~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~ 171 (174)
|+++|||++..+. +.++..+-..++.+=.||
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence 9999999996433 234444444555555553
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=124.76 Aligned_cols=157 Identities=20% Similarity=0.355 Sum_probs=121.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEec----------------------------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAG---------------------------- 54 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~---------------------------- 54 (174)
++..++++++|+.+++|++...+..+++.+|...|+++.|..... .+.++.
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~ 309 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIV 309 (459)
T ss_pred CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceE
Confidence 566788999999999999999998888888888888777654332 222233
Q ss_pred -----------CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-----
Q 042260 55 -----------NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES----- 118 (174)
Q Consensus 55 -----------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~----- 118 (174)
|+.||+||+++.. +....+. .+.|.++..+.++..+.+++.|..+.+.|+++..+..++..
T Consensus 310 ~~~~~~~SgH~DkkvRfwD~Rs~~--~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 310 CSISDVISGHFDKKVRFWDIRSAD--KTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred ecceeeeecccccceEEEeccCCc--eeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 4455555555442 2222223 35899999999999999999999999999999887776643
Q ss_pred cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260 119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL 163 (174)
Q Consensus 119 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 163 (174)
....+.+.|+|++.++++||.||.|+||++.++++...+..+...
T Consensus 387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~ 431 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN 431 (459)
T ss_pred ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence 345889999999999999999999999999999998877544433
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=1e-17 Score=119.33 Aligned_cols=164 Identities=20% Similarity=0.418 Sum_probs=125.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEe--ecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTI--QYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
++.-|++|+.|+++++|+++.+...... +.|...|..++|+|. ..+.++++|..+++||++.++. .... ..+.
T Consensus 31 ~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~--~~~i-~~~~ 107 (313)
T KOG1407|consen 31 DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC--TARI-ETKG 107 (313)
T ss_pred cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE--EEEe-eccC
Confidence 4667999999999999999877543332 456667888889874 3455667899999999998743 3322 2345
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-----------------------------------------Eee-c
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-----------------------------------------MEY-E 117 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-----------------------------------------~~~-~ 117 (174)
.-..+.|+|+|++++.+..|..|.+.|.++.+.. ..+ -
T Consensus 108 eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A 187 (313)
T KOG1407|consen 108 ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA 187 (313)
T ss_pred cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccccc
Confidence 5667789999999999999999999998753221 111 1
Q ss_pred ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec-CcccceeEEEEEe
Q 042260 118 SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL-GLQYGLRTFLFYH 170 (174)
Q Consensus 118 ~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~ 170 (174)
|+..+.||.|+|+|+++|+|+.|-.+.+||++.--|..-+ ++-..+++..|.|
T Consensus 188 H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 188 HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH 241 (313)
T ss_pred CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence 3456789999999999999999999999999998888776 4666677777766
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=2.1e-17 Score=120.33 Aligned_cols=106 Identities=20% Similarity=0.328 Sum_probs=94.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC---ceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK---HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.++||||.|.+|+|||.+....+..+..|.+.|+++.|.+.- .+++++.|+.|.+|+... +..+..+..|..+
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--WELLKSLKAHKGQ 129 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC--eEEeeeecccccc
Confidence 57789999999999999999999999998899999999999764 788889999999999854 4667778899999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCe
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV 111 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~ 111 (174)
|+.+++.|.+++-.+-+.|+.+++||+-+++
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999999999999999999985543
No 100
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2.4e-17 Score=119.56 Aligned_cols=150 Identities=18% Similarity=0.335 Sum_probs=115.0
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 86 (174)
.+++||+|++|++||.++...+..+... ..|.++....+ .++++..+..+.+||++.........-..-..++.+++.
T Consensus 108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~ 185 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL 185 (323)
T ss_pred eEEEcccCccEEEEeccccccccccccC-ceEEEEeccCC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE
Confidence 5789999999999999976556555544 37888877643 567777899999999987643322222233567899999
Q ss_pred eeCCCEEEEecCCCcEEEEeCCCC----eeEEeecc----------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 87 QCDGNWMYSGSEDGTVKIWDLRAP----VCQMEYES----------RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 87 ~~~~~~l~t~~~dg~v~iwd~~~~----~~~~~~~~----------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
.|++.=++.++-||+|.+=.+... .....|.- -.+|++++|+|-...+++|+.||.|.+||+.+.+
T Consensus 186 ~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 186 VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence 998888999999999988777654 22222221 2479999999999999999999999999999998
Q ss_pred ceeecC
Q 042260 153 CSCELG 158 (174)
Q Consensus 153 ~~~~~~ 158 (174)
..+++.
T Consensus 266 rl~q~~ 271 (323)
T KOG1036|consen 266 RLKQLA 271 (323)
T ss_pred hhhhcc
Confidence 887763
No 101
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.1e-18 Score=128.03 Aligned_cols=145 Identities=26% Similarity=0.496 Sum_probs=124.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEee-cCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQ-YPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
++.++++|+.||.|++|.+++|.|++.+. .|...|+++.|+.++. +++++-|..+|+.-+.++ +.+..+.+|.+-|
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG--K~LKEfrGHsSyv 351 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG--KCLKEFRGHSSYV 351 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc--hhHHHhcCccccc
Confidence 45678999999999999999999999987 6777899999998765 556667889999999887 5567788999999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCC
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~ 150 (174)
....|.++|..+++++.||+|++|+.++..|..+|.. ..+|+++...|.. +.++.+-...+|.|.++.-
T Consensus 352 n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 9999999999999999999999999999998888754 4679999998854 4567776777888888864
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.3e-17 Score=126.70 Aligned_cols=166 Identities=21% Similarity=0.327 Sum_probs=134.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEE-eecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRT-IQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+..+.+|+.|+.|.++|++..+.... ...|...|.++.|++++..+++++ |+.+.|||.... .++..+..|...|.
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~--~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP--EPKFTFTEHTAAVK 347 (484)
T ss_pred CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc--cccEEEeccceeee
Confidence 55789999999999999998877555 777888999999999999998765 678999999554 56677889999999
Q ss_pred EEEEee-CCCEEEEe--cCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEE--eeCCCcEEEEeCCCCcceeec
Q 042260 83 AVGFQC-DGNWMYSG--SEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELIS--GDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 83 ~~~~~~-~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~ 157 (174)
+++|+| ....||+| +.|+.|++||..+...+........|.++.|++..+.+++ |-.+..|.||+..+......+
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l 427 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL 427 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee
Confidence 999998 56678885 5699999999999998888888999999999998877765 345678999999987777666
Q ss_pred CcccceeEEEEEeec
Q 042260 158 GLQYGLRTFLFYHQD 172 (174)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (174)
..+..+.=++-..||
T Consensus 428 ~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 428 LGHTSRVLYLALSPD 442 (484)
T ss_pred cCCcceeEEEEECCC
Confidence 533333333333333
No 103
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=2.5e-17 Score=119.30 Aligned_cols=148 Identities=16% Similarity=0.306 Sum_probs=112.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc------------eeEEe---ecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGR------------CYRTI---QYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSS 66 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~------------~~~~~---~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~ 66 (174)
.++++++|+.||.+.+||+++-. |+... ..|...|..+.|-|- |.+..++-|.++|+||.++-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 36789999999999999987643 11111 235567889999883 44444556999999999775
Q ss_pred CCCCeEEeecCCCCEEEEEEee---CCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCE-EEEeeCCC
Q 042260 67 SPQPVMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTE-LISGDQNG 141 (174)
Q Consensus 67 ~~~~~~~~~~~~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~-l~s~~~d~ 141 (174)
+ ....++ ..+.|-.-+++| ...++++|..|-.|++.|+.++.+.+++ .|+..|.++.|+|.... |++|+.||
T Consensus 135 Q--~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg 211 (397)
T KOG4283|consen 135 Q--EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG 211 (397)
T ss_pred e--eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence 3 333343 245677777776 3558999999999999999999988877 57789999999997775 67899999
Q ss_pred cEEEEeCCCC-cce
Q 042260 142 NIRVWDLTAN-SCS 154 (174)
Q Consensus 142 ~i~iwd~~~~-~~~ 154 (174)
.||+||++.. .|.
T Consensus 212 ~irlWDiRrasgcf 225 (397)
T KOG4283|consen 212 AIRLWDIRRASGCF 225 (397)
T ss_pred eEEEEEeeccccee
Confidence 9999999975 344
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.76 E-value=2.8e-16 Score=112.44 Aligned_cols=149 Identities=17% Similarity=0.329 Sum_probs=121.9
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.++.+|.|++.|.++.+|-..+|+.+.++.+|.+.|++++.+.+.. ++.++.|..+++||..+++ .+..++ -...|
T Consensus 20 ~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk--~la~~k-~~~~V 96 (327)
T KOG0643|consen 20 REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK--QLATWK-TNSPV 96 (327)
T ss_pred CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc--EEEEee-cCCee
Confidence 3678999999999999999889999999999999999999987655 4556688999999999984 344443 45789
Q ss_pred EEEEEeeCCCEEEEecC-----CCcEEEEeCCCC-------eeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 82 MAVGFQCDGNWMYSGSE-----DGTVKIWDLRAP-------VCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~-----dg~v~iwd~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
..+.|+.+|++++.... -+.|.++|++.. .+...+ .....++...|.|-+..+++|.+||.|.+||.
T Consensus 97 k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da 176 (327)
T KOG0643|consen 97 KRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDA 176 (327)
T ss_pred EEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEc
Confidence 99999999998777654 467999999843 222222 34578999999999999999999999999999
Q ss_pred CCCcce
Q 042260 149 TANSCS 154 (174)
Q Consensus 149 ~~~~~~ 154 (174)
+++...
T Consensus 177 ~~g~~~ 182 (327)
T KOG0643|consen 177 RTGKEL 182 (327)
T ss_pred ccCcee
Confidence 997433
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=3.5e-18 Score=126.40 Aligned_cols=148 Identities=22% Similarity=0.382 Sum_probs=121.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
..+|++|+.|++|.+||.+++..+..+... -.-+.++|+|.+..+++ ..|..+..||.+.-. .++..+..|.+.|.+
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsAV~d 277 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSAVMD 277 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhc-ccchhhcccceeEEE
Confidence 347899999999999999999998877643 35678999996655554 467889999987643 455667789999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
+.|+|.|+.|++||.|.+|+||..+.....-.+. ..+.|.++.|+.+..++++||.|+.||+|.-++.+.+
T Consensus 278 VdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 278 VDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred eccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 9999999999999999999999998765443333 3467999999999999999999999999998875433
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.4e-17 Score=115.78 Aligned_cols=150 Identities=19% Similarity=0.302 Sum_probs=123.1
Q ss_pred cEEEEEeeCCCcEEEEECCCC---ceeEEeecCCCCeEEEEEcC--CCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 5 SVILATASYDKTIKFWEAKSG---RCYRTIQYPDSQVNRLEITP--NKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
++.|+|++.|++||||.++++ +.+.++.+|.++|+.++|.. -|.+|++ +.|+++-||.-..+.......+..|.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS 102 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence 457999999999999998764 45788899999999999875 5777775 47999999999888777777788899
Q ss_pred CCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCC-e---eEEeecccCcEEEEEEccC---C-----------CEEEEee
Q 042260 79 NNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAP-V---CQMEYESRAAVNTVVLHPN---Q-----------TELISGD 138 (174)
Q Consensus 79 ~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~-~---~~~~~~~~~~v~~~~~~~~---~-----------~~l~s~~ 138 (174)
..|.+++|-|+ |-.|+.++.||.|.+.+.+.. . ....+-|...|+++++.|. + ..|++|+
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 99999999986 557999999999999998764 1 1122346678999999986 3 3599999
Q ss_pred CCCcEEEEeCCCCcce
Q 042260 139 QNGNIRVWDLTANSCS 154 (174)
Q Consensus 139 ~d~~i~iwd~~~~~~~ 154 (174)
.|..|+||+..+.+..
T Consensus 183 cDn~VkiW~~~~~~w~ 198 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWK 198 (299)
T ss_pred CccceeeeecCCcchh
Confidence 9999999999987433
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=2.6e-17 Score=124.72 Aligned_cols=153 Identities=17% Similarity=0.344 Sum_probs=125.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++++|++|+.|..|.|||.++.+.+..++.|...|.+++|-.. ..+++++.|+.+++|+++... .+.++=+|+..|
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v 289 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS--YVETLYGHQDGV 289 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH--HHHHHhCCccce
Confidence 47889999999999999999999999999999999999999864 457778889999999997653 333445799999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
.++....-++.+-.|+.|+++++|++..........+...+.|++|. +...+++|+.||.|.+|++-.++-++...
T Consensus 290 ~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred eeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEee
Confidence 99998888887777889999999999543333323445688999886 56779999999999999999887665543
No 108
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=5.2e-17 Score=129.48 Aligned_cols=150 Identities=19% Similarity=0.342 Sum_probs=131.6
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++.+|+.+--|.+++||-+.+-+-..++.+|.-+|.++..+|++.+++++ .|..+++|-++=+. +-..+-+|...|
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD--CHKS~fAHdDSv 595 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD--CHKSFFAHDDSV 595 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch--hhhhhhcccCce
Confidence 468899999999999999999999999999999999999999998887764 68899999998774 333445799999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
.++.|.|...++.|++.|+.|+-||-.....+.++ .|...|.+++..|+|.+++++|.|.+||+|........
T Consensus 596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred eEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence 99999999999999999999999998877666555 56788999999999999999999999999998875433
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.8e-16 Score=110.42 Aligned_cols=143 Identities=22% Similarity=0.464 Sum_probs=120.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeec--C-----CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeec
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQY--P-----DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
+-++++||.|.+||+||++-..++..+.. + .+.|..++..|.|.+++++ .|...-+||++.+ ..+..+..
T Consensus 194 ~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--r~iq~f~p 271 (350)
T KOG0641|consen 194 GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--RMIQRFHP 271 (350)
T ss_pred CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC--ceeeeeCC
Confidence 45789999999999999998888877642 2 2568899999999999887 5667899999987 44556778
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe-----eEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV-----CQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
|...|.++.|+|...++.||+.|..|++-|+.... .+..-+++..+-.+.|+|++-.+++.+.|+++.+|-++
T Consensus 272 hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 272 HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999999999999999999987532 23334677888889999999999999999999999764
No 110
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=7.7e-17 Score=128.53 Aligned_cols=140 Identities=20% Similarity=0.382 Sum_probs=123.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
...||.|-.||.|++|+..++.....+.+|..+|+.+.|...|..++++ .|+.|-+||+-.. .....+.+|+..++.
T Consensus 77 ~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E--~Gl~rL~GHkd~iT~ 154 (888)
T KOG0306|consen 77 ILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE--EGLFRLRGHKDSITQ 154 (888)
T ss_pred cceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc--eeeEEeecchHHHhH
Confidence 4457999999999999999998899999999999999999998877765 6888999999654 345668899999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
.-|....+++++.|.|+.|++||+.++.|..+. .++..|..+++++ +.+++++.|+.+++|++
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWEL 218 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEe
Confidence 999888899999999999999999998887665 6788999999977 77888999999999999
No 111
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.74 E-value=3.2e-18 Score=121.43 Aligned_cols=164 Identities=19% Similarity=0.317 Sum_probs=138.2
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
..+-+|++++.|+.-.+-+-++|.-+.++.+|.+.|+....+.+....++ +.|-+.++||.-++.. +..+ .|.--|
T Consensus 27 p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde--lhsf-~hkhiv 103 (334)
T KOG0278|consen 27 PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE--LHSF-EHKHIV 103 (334)
T ss_pred CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh--hhhh-hhhhee
Confidence 46778999999999999999999999999999999999988877555443 4577889999987732 3333 477789
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-Eee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
.+++|+.+.++|+||+.+..+||+|++++... .++ .+...|..+.|...++.+++.+.|++||+||.+++..+..+..
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~ 183 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF 183 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec
Confidence 99999999999999999999999999987643 223 4677899999999999999999999999999999999999998
Q ss_pred ccceeEEEEE
Q 042260 160 QYGLRTFLFY 169 (174)
Q Consensus 160 ~~~~~~~~~~ 169 (174)
++.+.++=+.
T Consensus 184 ~s~VtSlEvs 193 (334)
T KOG0278|consen 184 NSPVTSLEVS 193 (334)
T ss_pred CCCCcceeec
Confidence 8888765443
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.74 E-value=1.1e-16 Score=131.42 Aligned_cols=158 Identities=20% Similarity=0.315 Sum_probs=128.3
Q ss_pred CcEEEEEee--CCCcEEEEECCC------------CceeEEeecCCCCeEEEEEcCCCceEEEecCC-cEEEEEcCC---
Q 042260 4 PSVILATAS--YDKTIKFWEAKS------------GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNS--- 65 (174)
Q Consensus 4 ~~~~l~s~s--~D~~v~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~-~i~i~d~~~--- 65 (174)
++..++||| .|+.+++|+.+. .+.+.....|.+.|+++.|+|+|.++++|+|+ .+-+|....
T Consensus 24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~ 103 (942)
T KOG0973|consen 24 DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS 103 (942)
T ss_pred CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC
Confidence 566799999 999999998531 22345556688899999999999999987654 578998762
Q ss_pred -------------CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCC
Q 042260 66 -------------SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQ 131 (174)
Q Consensus 66 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~ 131 (174)
..++....+.+|...|..++|+|++.++++++.|++|.+|+.++......+ .|...|-.+.|.|-|
T Consensus 104 ~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G 183 (942)
T KOG0973|consen 104 GTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG 183 (942)
T ss_pred cccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc
Confidence 012345667889999999999999999999999999999999988776666 467789999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 132 TELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 132 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
+++|+-+.|++|++|+..+-.+.-.++-+.
T Consensus 184 ky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 184 KYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred CeeeeecCCceEEEEEcccceeeEeeccch
Confidence 999999999999999988765554444333
No 113
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.9e-16 Score=119.14 Aligned_cols=151 Identities=20% Similarity=0.256 Sum_probs=121.3
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCc---eeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGR---CYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
++|++|||++.|.|..+|++-.-. ...+...|..+|.-+.|+|+..+++++ -+..+++||..++....... .++.
T Consensus 234 ~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~ 312 (519)
T KOG0293|consen 234 HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLG 312 (519)
T ss_pred CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcC
Confidence 578999999999999999865433 366677888899999999988776654 56679999999885443332 2356
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
..+.+++|.|+|..+++|+.|+.+..||+.......... ....|.++++.++|..+++.+.|..|++++.++..+.
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 789999999999999999999999999998654322222 2356999999999999999999999999999976544
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=2.6e-17 Score=120.50 Aligned_cols=144 Identities=24% Similarity=0.419 Sum_probs=123.8
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcC----CCC--------------
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVN----SSS-------------- 67 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~----~~~-------------- 67 (174)
++.++|.|.+.+||.+++|.|+..+.+|.+.|+++.|++++.++.+ ++|+...||... .++
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 7899999999999999999999999999999999999999887654 578889999621 000
Q ss_pred --------------------CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEE
Q 042260 68 --------------------PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVV 126 (174)
Q Consensus 68 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~ 126 (174)
..++..+.+|...|.+..|-..|+.++|++.|.+-.+||++++..+..+ .|....+-++
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs 321 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS 321 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence 0133446678899999999999999999999999999999999887666 4667788889
Q ss_pred EccCCCEEEEeeCCCcEEEEeCCC
Q 042260 127 LHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
-+|+.+.+++.+.|.+.|+||++.
T Consensus 322 tHptQrLVvTsSrDtTFRLWDFRe 345 (481)
T KOG0300|consen 322 THPTQRLVVTSSRDTTFRLWDFRE 345 (481)
T ss_pred cCCcceEEEEeccCceeEeccchh
Confidence 999999999999999999999994
No 115
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=7e-17 Score=121.40 Aligned_cols=147 Identities=20% Similarity=0.353 Sum_probs=116.1
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
..+++.+++...|..+++++.++..+...+.. +.+|++...+.+++++... .+..+++||++.. ..+..|.+|+..
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~--~lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEEN--KLVRKYFGHKQG 439 (519)
T ss_pred cCCCcEEEEEecccceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecchh--hHHHHhhccccc
Confidence 45677888888999999999887666655544 4579999999999886654 6788999999844 555667777654
Q ss_pred --EEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCCC
Q 042260 81 --VMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 81 --v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~ 151 (174)
+..-+|-. +..++++||+|+.|+||+..+.+.+.++. |...|++++++|..+ ++|+||.||+||||.....
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 33334543 55799999999999999999998887774 567899999999664 6899999999999998754
No 116
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2e-16 Score=116.34 Aligned_cols=146 Identities=19% Similarity=0.462 Sum_probs=118.3
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC--Cc-eEEEecCCcEEEEEcCCCCCCCeEEeecCC-CCE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN--KH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHT-NNV 81 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~v 81 (174)
..+|++-..|+|++||..+++.++.++.++..++.+.|... .. +++++.||.||+||++.........+..+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 46888888999999999999999999999888888888763 33 445667999999999987766666666665 567
Q ss_pred EEEEEeeCCCEEEEecC----CCcEEEEeCCCCee-EEee--cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCC
Q 042260 82 MAVGFQCDGNWMYSGSE----DGTVKIWDLRAPVC-QMEY--ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~----dg~v~iwd~~~~~~-~~~~--~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~ 151 (174)
.+++.++.++.+++|.. |-.|.+||+|.... +..+ .|..-|+++.|+|+. +.|++||.||-|.++|++..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 77787778888888854 77899999997654 3322 467889999999965 56889999999999999965
No 117
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=6.5e-16 Score=112.68 Aligned_cols=159 Identities=18% Similarity=0.294 Sum_probs=127.9
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
-|++|+.||.|.+|+....+++.+++.|..+|+.++.+|.+++. +.++|..+++|++-.++...+..+. .....+.
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~---~~at~v~ 175 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK---NKATLVS 175 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC---CcceeeE
Confidence 47899999999999999999999999999999999999999874 4567889999999776544444332 3344489
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec-Cccccee
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL-GLQYGLR 164 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~ 164 (174)
|++.|.+|+-++.+ .|-+|.+...........+.++.++.|. +++.|++|+.|+.|++||-....+.+.+ -+...+.
T Consensus 176 w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 176 WSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK 253 (362)
T ss_pred EcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhhee
Confidence 99999988888777 5899999876655555555566776664 5788999999999999999998888886 4667777
Q ss_pred EEEEEe
Q 042260 165 TFLFYH 170 (174)
Q Consensus 165 ~~~~~~ 170 (174)
.+.+|.
T Consensus 254 ~i~~~~ 259 (362)
T KOG0294|consen 254 DIASYT 259 (362)
T ss_pred eeEEEe
Confidence 777664
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.71 E-value=2.1e-16 Score=127.18 Aligned_cols=142 Identities=23% Similarity=0.391 Sum_probs=121.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
++.++|++.||.+++||.++...+..++.. ..+..+..+....+++. .+|-.|+++|..+. ..+..+.+|.+++++
T Consensus 505 n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~--kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 505 NRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLAIALDDFSIRVVDVVTR--KVVREFWGHGNRITD 581 (910)
T ss_pred CceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhhhhcCceeEEEEEchhh--hhhHHhhccccceee
Confidence 567999999999999999998888777754 45777878876666554 46678999999765 345567899999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC-CcEEEEeCC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN-GNIRVWDLT 149 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~i~iwd~~ 149 (174)
++|+|+|+++++++.|++||+||+.+..++-.+....++.++.|+|++.+||++..| ..|.+|-=.
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999999999999999999988888888999999999999999999988 569999644
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=5.9e-16 Score=117.45 Aligned_cols=157 Identities=17% Similarity=0.313 Sum_probs=123.2
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
-|.+++.|+++++|+++....+.++.+|+..|.++....-...++.+ -|.++++|++... ..+.+.++.+.+-+++
T Consensus 258 ~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee---sqlifrg~~~sidcv~ 334 (479)
T KOG0299|consen 258 ELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE---SQLIFRGGEGSIDCVA 334 (479)
T ss_pred ceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc---ceeeeeCCCCCeeeEE
Confidence 47899999999999999888888888999999998776666666555 6999999999443 3445678888899999
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--c-----------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--S-----------RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~-----------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
|-. ...|++|+.+|.|.+|++-+.+++.+.. | +.-|++++..|....+++|+.+|.||+|.++.+.
T Consensus 335 ~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 335 FIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred Eec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 864 5679999999999999997766555432 1 1158899999999999999999999999999883
Q ss_pred c----eeecCcccceeEEE
Q 042260 153 C----SCELGLQYGLRTFL 167 (174)
Q Consensus 153 ~----~~~~~~~~~~~~~~ 167 (174)
. .+++++..-++..-
T Consensus 414 r~i~~l~~ls~~GfVNsl~ 432 (479)
T KOG0299|consen 414 RAINLLYSLSLVGFVNSLA 432 (479)
T ss_pred cccceeeecccccEEEEEE
Confidence 3 34455444444433
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.9e-15 Score=114.90 Aligned_cols=159 Identities=16% Similarity=0.348 Sum_probs=123.2
Q ss_pred EEEEEeeCCCc-EEEEECCCCceeEEeecC-------------------------------------------CCCeEEE
Q 042260 6 VILATASYDKT-IKFWEAKSGRCYRTIQYP-------------------------------------------DSQVNRL 41 (174)
Q Consensus 6 ~~l~s~s~D~~-v~vwd~~~~~~~~~~~~~-------------------------------------------~~~v~~~ 41 (174)
.++.+++.|.. +.+||+++|.....++.. ++++.++
T Consensus 8 ~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 8 TVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred EEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 34555666766 899999887655444332 1357788
Q ss_pred EEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC---------Ce
Q 042260 42 EITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA---------PV 111 (174)
Q Consensus 42 ~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---------~~ 111 (174)
+-+|.|.+++++ ..+.+++|.+.++.. +..+.+|=..++++.|+.||.+|+||+.||.|++|++-. .+
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~L--L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGIL--LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccH--HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 888999998887 788999999999854 444578888999999999999999999999999999632 33
Q ss_pred eEEee-cccCcEEEEEEccCC--CEEEEeeCCCcEEEEeCCCCcceeecCcccceeEE
Q 042260 112 CQMEY-ESRAAVNTVVLHPNQ--TELISGDQNGNIRVWDLTANSCSCELGLQYGLRTF 166 (174)
Q Consensus 112 ~~~~~-~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 166 (174)
....| .|.-+|.++.+.+.+ ..|+++|.|.++++||+..+..+.....++...+.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av 223 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAV 223 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeE
Confidence 34444 456789999887753 57999999999999999999888776666655444
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.7e-15 Score=123.03 Aligned_cols=148 Identities=16% Similarity=0.301 Sum_probs=123.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEE-----eec
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMS-----YDQ 76 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~-----~~~ 76 (174)
.++..+|.||.|-.||+-+..+......++.|+++|.++.++|.+.+++++ .||.+++||+.++....... ...
T Consensus 106 g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~ 185 (933)
T KOG1274|consen 106 GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF 185 (933)
T ss_pred cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc
Confidence 356789999999999999999998899999999999999999999988765 79999999998764321111 111
Q ss_pred C-CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 77 H-TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 77 ~-~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
. ...+..++|+|++..++..+.|+.|++++.........+. ..+.+.++.|+|+|.+||+++-||.|.+||+++
T Consensus 186 ~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 186 ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 2 3456788999999999999999999999999887766653 244599999999999999999999999999994
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.6e-16 Score=112.43 Aligned_cols=153 Identities=23% Similarity=0.356 Sum_probs=119.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCce--eEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCC-CCCCeEEeecC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRC--YRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSS-SPQPVMSYDQH 77 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~-~~~~~~~~~~~ 77 (174)
.+.+||++++||.|.||.-++|+- ......|+..|++++|.|. +.+|+ ++.|+.|.+.+.++. .........+|
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 477999999999999999877742 4445568889999999986 44444 568999999998765 45555556789
Q ss_pred CCCEEEEEEeeC---C-----------CEEEEecCCCcEEEEeCCCCeeEE--ee-cccCcEEEEEEccCC----CEEEE
Q 042260 78 TNNVMAVGFQCD---G-----------NWMYSGSEDGTVKIWDLRAPVCQM--EY-ESRAAVNTVVLHPNQ----TELIS 136 (174)
Q Consensus 78 ~~~v~~~~~~~~---~-----------~~l~t~~~dg~v~iwd~~~~~~~~--~~-~~~~~v~~~~~~~~~----~~l~s 136 (174)
.-.|.+++|.|- | +.|++|+.|..|+||+......+. ++ .|..-|.++++.|.- ..+++
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 999999999874 4 679999999999999998753221 12 456779999999964 46899
Q ss_pred eeCCCcEEEEeCCCCcceee
Q 042260 137 GDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 137 ~~~d~~i~iwd~~~~~~~~~ 156 (174)
+++||++.||-.+.....++
T Consensus 229 ~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 229 CSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred ecCCCcEEEEEecCccCccc
Confidence 99999999999885434443
No 123
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=1.8e-16 Score=117.49 Aligned_cols=146 Identities=18% Similarity=0.358 Sum_probs=115.2
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCC-------------------
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS------------------- 67 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------------- 67 (174)
.++||+.||.|++||+.+-++...++.|.+.|.++++.. +.++.++.|.+++.|-+...-
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN 159 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence 479999999999999999999999999999999999987 567777778888888643210
Q ss_pred -----------------CCCeEEeecCCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc
Q 042260 68 -----------------PQPVMSYDQHTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP 129 (174)
Q Consensus 68 -----------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 129 (174)
..|+..+.--...+.++.|+|... .|++|++|+.|.++|+|+..+.........-+.|+|+|
T Consensus 160 ~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP 239 (433)
T KOG0268|consen 160 SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP 239 (433)
T ss_pred ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc
Confidence 011111222235677888888544 57778899999999999988877777777889999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 130 NQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 130 ~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
..-.+.+|.+|-.+..+|++.-..
T Consensus 240 eafnF~~a~ED~nlY~~DmR~l~~ 263 (433)
T KOG0268|consen 240 EAFNFVAANEDHNLYTYDMRNLSR 263 (433)
T ss_pred cccceeeccccccceehhhhhhcc
Confidence 777788899999999999997543
No 124
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.69 E-value=3.5e-16 Score=122.88 Aligned_cols=156 Identities=24% Similarity=0.351 Sum_probs=116.2
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCce------eEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEee
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRC------YRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~ 75 (174)
+.+++|+.+..||.|.++|.+.-+. +.....|...|-++.|-|... ++.+++|.++|+||+.+.+......+-
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 4578999999999999999765322 344556888899999999444 445568899999999988766665577
Q ss_pred cCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCee-------------EEe--------------e-cccCcEEE--
Q 042260 76 QHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVC-------------QME--------------Y-ESRAAVNT-- 124 (174)
Q Consensus 76 ~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~-------------~~~--------------~-~~~~~v~~-- 124 (174)
+|...+.+++|.+ +...|++|+.||.+.|||++-... ..+ . -+...|.+
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv 221 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV 221 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence 8999999999998 566899999999999999863210 000 0 01112333
Q ss_pred -EEEccCCCEEEEeeC-CCcEEEEeCCCCcceeecC
Q 042260 125 -VVLHPNQTELISGDQ-NGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 125 -~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~ 158 (174)
+.+..|+..||+++. |+.|++||++...+.+.++
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e 257 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE 257 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeecccccccccC
Confidence 444456777888776 9999999999998887754
No 125
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=9.5e-16 Score=114.74 Aligned_cols=144 Identities=17% Similarity=0.335 Sum_probs=114.6
Q ss_pred EEEEEeeCCCcEEEEECCCC-------ceeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeec
Q 042260 6 VILATASYDKTIKFWEAKSG-------RCYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
+.|||||.|.+|+||++-.+ +.+..+.+|...|..+.|+|. +.+++++.|..+.+|++.+++ ....+.
T Consensus 95 ~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~- 171 (472)
T KOG0303|consen 95 CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD- 171 (472)
T ss_pred ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-
Confidence 47999999999999996433 346667788889999999995 456777889999999998884 344455
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEe---eCCCcEEEEeCCCC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISG---DQNGNIRVWDLTAN 151 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~ 151 (174)
|...|.++.|+.+|.+++|++.|..|||||.++...+..- +.+.......|..++..+.+| .++.++-+||-.+-
T Consensus 172 hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 172 HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccc
Confidence 9999999999999999999999999999999998876554 223445666777788844444 35778999998864
Q ss_pred c
Q 042260 152 S 152 (174)
Q Consensus 152 ~ 152 (174)
+
T Consensus 252 ~ 252 (472)
T KOG0303|consen 252 E 252 (472)
T ss_pred c
Confidence 4
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.6e-15 Score=116.69 Aligned_cols=162 Identities=17% Similarity=0.271 Sum_probs=128.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+.-|.|.+.+|+|.-||+.+++.........+.|++++.+|.+..++.+ .|+.+..++...+.......+...++.+.+
T Consensus 80 ~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 80 GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 4468899999999999999999999998888899999999988776655 777777777777665555566667899999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-----c----cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-----S----RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-----~----~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
+.|++++..+++|+.||.|++||..++...+... . ..=|.++.+. ....+++|.+.|+|++||...+...
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchh
Confidence 9999999999999999999999998876655211 1 1125677776 4567999999999999999998877
Q ss_pred eecC-cccceeEEE
Q 042260 155 CELG-LQYGLRTFL 167 (174)
Q Consensus 155 ~~~~-~~~~~~~~~ 167 (174)
+.+. ++.++.+++
T Consensus 239 qS~~~h~adVl~La 252 (691)
T KOG2048|consen 239 QSHSCHDADVLALA 252 (691)
T ss_pred hhhhhhhcceeEEE
Confidence 6653 555555544
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.68 E-value=2.7e-16 Score=120.94 Aligned_cols=146 Identities=18% Similarity=0.338 Sum_probs=121.9
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCcee--EEeecCCCCeEEEEEcCCCce-EEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCY--RTIQYPDSQVNRLEITPNKHY-LAAAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
.+++.|++|+.-.++-|||+...... ..+......+..++.+|+.++ |++..|+.|.|||++.. ..+..+++|+.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--~~VrqfqGhtD 552 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTD 552 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--eeeecccCCCC
Confidence 46778999999999999998765442 223333345778999998765 55568999999999876 55677899999
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.+.++.++++|..|.||+-|.+||.||+|...........+.|.++.++|++.-|+.|-+++.+-+--.+.
T Consensus 553 GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 99999999999999999999999999999887766667788999999999999999999999887766553
No 128
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.68 E-value=2.5e-15 Score=110.15 Aligned_cols=169 Identities=25% Similarity=0.414 Sum_probs=125.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCC-----CCeEEEEEcCCCceEEEecCCcEEEEEc-CCCCC---------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPD-----SQVNRLEITPNKHYLAAAGNPHIRLFDV-NSSSP--------- 68 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~d~~i~i~d~-~~~~~--------- 68 (174)
+..++++.+.|.-|++||..+|+...++..-+ ....+++|+|+|..+.++....||+||. +.+..
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence 34578899999999999999999988876422 2356899999999999999999999998 33211
Q ss_pred ---------------------------------------CCeEEeecCCCCEEEEEEeeCCCEEEEecC-CCcEEEEeCC
Q 042260 69 ---------------------------------------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLR 108 (174)
Q Consensus 69 ---------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~ 108 (174)
.++..+.+|.+.|+.+.|.++|+.|++|+. |..|..||+|
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 112223367889999999999999999876 6789999998
Q ss_pred CCee-EEeec-----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC-CcceeecCcccceeEEEEEeecC
Q 042260 109 APVC-QMEYE-----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA-NSCSCELGLQYGLRTFLFYHQDM 173 (174)
Q Consensus 109 ~~~~-~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 173 (174)
...- +..+. ..++|. ....|+++.|++|+.||.|++||++. +..+.-+.++++-.--+..||-|
T Consensus 282 ~~~~pv~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM 352 (406)
T ss_pred hccchhhhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc
Confidence 6432 22221 122332 23458899999999999999999997 66666666666665566666655
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=3.1e-14 Score=106.08 Aligned_cols=147 Identities=11% Similarity=0.176 Sum_probs=111.7
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
.+++|++.|+.+++||+.+++.+..+..+. .+..++|+|++..+ ++ ..++.+++||..+++. ...+..+ ..+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSG-PDPEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCC-CCccE
Confidence 478899999999999999999888887554 46789999998754 33 3567899999987643 2223333 33567
Q ss_pred EEEeeCCCEEEE-ecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCC-cEEEEeCCCCcceee
Q 042260 84 VGFQCDGNWMYS-GSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNG-NIRVWDLTANSCSCE 156 (174)
Q Consensus 84 ~~~~~~~~~l~t-~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~ 156 (174)
++++++++.++. ++.|+.+++||+++......+.....+.+++++|++..+++++.++ .+..||.++.+....
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 789999987654 5668999999999877666666555678899999999998887765 467789987766543
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=4.4e-15 Score=108.78 Aligned_cols=168 Identities=21% Similarity=0.367 Sum_probs=125.8
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEc---CCC---CCCCeEEe
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDV---NSS---SPQPVMSY 74 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~---~~~---~~~~~~~~ 74 (174)
|+.+.+|+|++.|-+|.+|+++ |+.+..+......-...+.+|+|.++++++ ...+++|.. ..+ +......+
T Consensus 196 A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 196 AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 5678899999999999999999 999999887666667889999999988764 667999986 222 23445667
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC-------CeeEEee-----cccCcEEEEEEccCCCEEEEeeCCCc
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA-------PVCQMEY-----ESRAAVNTVVLHPNQTELISGDQNGN 142 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-------~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~ 142 (174)
.+|...|...+|+++.+.++|.|.||.+|+||+.- ++...+. ........+.++|++..|+.. ...+
T Consensus 275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~ 353 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSD 353 (420)
T ss_pred ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCc
Confidence 89999999999999999999999999999999753 2222222 123445699999999987755 3457
Q ss_pred EEEEeCCCCcceeec-CcccceeEEEEEee
Q 042260 143 IRVWDLTANSCSCEL-GLQYGLRTFLFYHQ 171 (174)
Q Consensus 143 i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~ 171 (174)
++++.-+++...-++ .....-++-+.|.+
T Consensus 354 l~~~~se~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 354 LKVFASEDGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred eEEEEcccCccchhHHHhhcCceeeEEecC
Confidence 999999987654333 23333344444433
No 131
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=8.8e-16 Score=109.73 Aligned_cols=144 Identities=16% Similarity=0.260 Sum_probs=108.5
Q ss_pred EEEEEeeCCCcEEEEECCCCc----------eeEEeecCCCCeEEEEEcCCC-ceEEEecCCcEEEEEcCCC--CCCCeE
Q 042260 6 VILATASYDKTIKFWEAKSGR----------CYRTIQYPDSQVNRLEITPNK-HYLAAAGNPHIRLFDVNSS--SPQPVM 72 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~--~~~~~~ 72 (174)
.+++.|-.+|.+.+||+.++. .+.....|..+|.++.+.+.. .=+.++.+..+-.|.++-. ..+.-.
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 457788889999999998873 333344567789999887642 2244555667778877533 222222
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
...-.+..+..+.+-+|++.+||++.|+++|+|.-++......+ .|...|++++|+|+.+.+|+++.|+.|.+|++.
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 22334566888899999999999999999999999886655433 456889999999999999999999999999974
No 132
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.66 E-value=3.9e-15 Score=122.49 Aligned_cols=148 Identities=16% Similarity=0.294 Sum_probs=122.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCC--------------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSP-------------- 68 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~-------------- 68 (174)
+..+|+++|.|++|.+|+..+.+.+..++.|.+.|-++.|.|.|+++++ ++|+.+++|...+-+.
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 5679999999999999999999999999999999999999999999987 5678999998532110
Q ss_pred ------------------------------------CCeEEeecCCCCEEEEEEee-----CCC------------EEEE
Q 042260 69 ------------------------------------QPVMSYDQHTNNVMAVGFQC-----DGN------------WMYS 95 (174)
Q Consensus 69 ------------------------------------~~~~~~~~~~~~v~~~~~~~-----~~~------------~l~t 95 (174)
..-..+-+|...+.+++|+| +.+ .+|+
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 00112337889999999987 122 5788
Q ss_pred ecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 96 GSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 96 ~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
|+.|+++-||....+++..... ....|.++.|+|+|..|+++|.||+|.+..++..
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9999999999998777665443 3678999999999999999999999999999864
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.6e-14 Score=112.93 Aligned_cols=149 Identities=17% Similarity=0.327 Sum_probs=125.8
Q ss_pred cEEEEEeeCCCcEEEEECCCCce-eEEeecC-CCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRC-YRTIQYP-DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+..||.+-.||.|-+|++..+=. ...+.++ +..|.+++|.+.+.+++++.++.|.-||+.+. ++...++...+.+.
T Consensus 37 S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l--k~~~~~d~~gg~IW 114 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL--KQKYNIDSNGGAIW 114 (691)
T ss_pred CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC--ceeEEecCCCccee
Confidence 34589999999999999987644 3344443 56799999999999999999999999999876 45666777889999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
+++.+|.+..++-|+.||.+.+.+....+..... ...++|.++.|+|++..++.|+.||.|++||...+..+.
T Consensus 115 siai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 115 SIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred EEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence 9999999999999999998888888877665433 235789999999999999999999999999999988776
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.66 E-value=1.8e-15 Score=114.88 Aligned_cols=145 Identities=21% Similarity=0.329 Sum_probs=112.4
Q ss_pred cEEEEEeeCCCcEEEEECCCCc----eeEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCC--------
Q 042260 5 SVILATASYDKTIKFWEAKSGR----CYRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQP-------- 70 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~-------- 70 (174)
..++|+|..-|+|-+||+.+.+ .+..+..|..+|.++.|+|.+ .+++++.||.||+-|++......
T Consensus 200 ~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~ 279 (498)
T KOG4328|consen 200 RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN 279 (498)
T ss_pred ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence 4689999999999999995322 355666788899999999964 56777788888888775321100
Q ss_pred --------------e---------------------EEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe---
Q 042260 71 --------------V---------------------MSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV--- 111 (174)
Q Consensus 71 --------------~---------------------~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~--- 111 (174)
+ ..+.-|..+|..++++| +..+++|++.|++.+|||+|+..
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred eeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 0 01123567899999998 56689999999999999998522
Q ss_pred --eEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 112 --CQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 112 --~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.+.++.|+..|++..|+|.+-.|++.+.|..||+||..
T Consensus 360 sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 24566788999999999988889999999999999995
No 135
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.5e-14 Score=102.65 Aligned_cols=159 Identities=19% Similarity=0.239 Sum_probs=119.1
Q ss_pred CCCcEEEEEeeCCCcEEEEECCC---------Cc-eeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCC---
Q 042260 2 AQPSVILATASYDKTIKFWEAKS---------GR-CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSP--- 68 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--- 68 (174)
++++++|+.|+.+|+|.++.++. |+ .+...+.|+.+++.++|+. .++.+++|+.++-|.++....
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gdG~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGDGLVYGWEWNEEEESLA 96 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeeccCceEEEeeehhhhhhcc
Confidence 46789999999999999998753 22 2445577899999999983 456667789999998854321
Q ss_pred -CCeE--EeecC-----CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeC
Q 042260 69 -QPVM--SYDQH-----TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 69 -~~~~--~~~~~-----~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~ 139 (174)
+++. ..+.| -..|.++-..|..+-+++++.|+.++-||+++++...++. |..-+.+++--.....+++|++
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E 176 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE 176 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC
Confidence 1110 11112 2456777778777777777899999999999999998885 5566788777555667999999
Q ss_pred CCcEEEEeCCCCcceeecCcccc
Q 042260 140 NGNIRVWDLTANSCSCELGLQYG 162 (174)
Q Consensus 140 d~~i~iwd~~~~~~~~~~~~~~~ 162 (174)
||++|+||.++.+|+.-++...+
T Consensus 177 DGtvRvWd~kt~k~v~~ie~yk~ 199 (325)
T KOG0649|consen 177 DGTVRVWDTKTQKHVSMIEPYKN 199 (325)
T ss_pred CccEEEEeccccceeEEeccccC
Confidence 99999999999999977664433
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.66 E-value=4.3e-15 Score=116.83 Aligned_cols=150 Identities=21% Similarity=0.328 Sum_probs=110.5
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEE--eecCCCCeEEEEEcCCCce-E-EEecCCcEEEEEcCCCCCC---------
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRT--IQYPDSQVNRLEITPNKHY-L-AAAGNPHIRLFDVNSSSPQ--------- 69 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-~-~~~~d~~i~i~d~~~~~~~--------- 69 (174)
+....|++++.|.++|+||++++++... ..+|...+.+++|.+.+.. | .++.|+.+.|||.+.....
T Consensus 110 pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 110 PGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred CCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 3456789999999999999999988766 7789889999999996543 3 3456899999998754311
Q ss_pred ---------C-------eEEeecCCCCEEE---EEEeeCCCEEEEecC-CCcEEEEeCCCCeeEEeec---------c--
Q 042260 70 ---------P-------VMSYDQHTNNVMA---VGFQCDGNWMYSGSE-DGTVKIWDLRAPVCQMEYE---------S-- 118 (174)
Q Consensus 70 ---------~-------~~~~~~~~~~v~~---~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~---------~-- 118 (174)
+ ......+...+.+ +.+..|...||+++. |+.|++||+++..+....+ +
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~sk 269 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSK 269 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccc
Confidence 0 1111223344444 455667888999887 9999999999866543221 1
Q ss_pred -cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 119 -~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
...+.++...-.|++|++.+.|+.|.+||+....
T Consensus 270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence 2347788888888999888889999999999754
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.66 E-value=5.5e-14 Score=104.77 Aligned_cols=164 Identities=12% Similarity=0.122 Sum_probs=116.2
Q ss_pred CcEEEEEeeCCC-cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-cCCcEEEEEcCCCCCCCeEEeec---C
Q 042260 4 PSVILATASYDK-TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-GNPHIRLFDVNSSSPQPVMSYDQ---H 77 (174)
Q Consensus 4 ~~~~l~s~s~D~-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~d~~i~i~d~~~~~~~~~~~~~~---~ 77 (174)
++.++++++.++ .+.+||.++++........ .....+.|++++..++ ++ .++.+++||+++++......+.. +
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 203 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH 203 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc
Confidence 466777777765 4677899888776655433 3457789999988664 43 47889999998764322221111 1
Q ss_pred --CCCEEEEEEeeCCCEEE-EecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCCCcc
Q 042260 78 --TNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG-DQNGNIRVWDLTANSC 153 (174)
Q Consensus 78 --~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~ 153 (174)
......++|++++++++ +.+.++.+.+||+++.+..........+.+++|+|++..|+++ +.++.|++||+++.++
T Consensus 204 ~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 11234678899999754 4455678999999887766555555678999999999998876 4689999999999999
Q ss_pred eeecCcccceeEEEE
Q 042260 154 SCELGLQYGLRTFLF 168 (174)
Q Consensus 154 ~~~~~~~~~~~~~~~ 168 (174)
...++....+-..+|
T Consensus 284 ~~~~~~~~~~~~~~~ 298 (300)
T TIGR03866 284 IKSIKVGRLPWGVVV 298 (300)
T ss_pred EEEEEcccccceeEe
Confidence 888776665555544
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.65 E-value=4.4e-15 Score=114.14 Aligned_cols=150 Identities=20% Similarity=0.354 Sum_probs=113.5
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCC-------------------------------------------eE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-------------------------------------------VN 39 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~-------------------------------------------v~ 39 (174)
..+.++++||..+.|+|||++...+.+..+.|... |.
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 34568999999999999998744333333333332 33
Q ss_pred EEEEcCCCceE-E-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260 40 RLEITPNKHYL-A-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY 116 (174)
Q Consensus 40 ~~~~~~~~~~~-~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~ 116 (174)
-+.+++....+ . ++.+|.+.+||.....+. ......|..+...++|+| +...|++.+.|..|.+||++..+....+
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~-~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI-FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcc-cchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 45566654433 2 345677899998654322 223457899999999998 5668999999999999999988877777
Q ss_pred cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 117 ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 117 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
....+...++|.++|.+|++|...|.|..||++..+-
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 7778899999999999999999999999999996543
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=4.4e-15 Score=112.39 Aligned_cols=162 Identities=20% Similarity=0.291 Sum_probs=121.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCce---------------------eEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRC---------------------YRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRL 60 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i 60 (174)
.+.++|.|..|..|.|||+.--.. -..-..|...|..+.|+... .+.+++.|.++++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 466899999999999999742110 00012355566778787643 3344457899999
Q ss_pred EEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCee-EEeecccCcEEEEEEccCCCE-EEEe
Q 042260 61 FDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVC-QMEYESRAAVNTVVLHPNQTE-LISG 137 (174)
Q Consensus 61 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~-l~s~ 137 (174)
||+.+++ +...+..|..+|.++.|++ .+..+++|+.|++|++.|.|.+.. ...+...+.|-.++|+|.... ++++
T Consensus 271 WD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 9999884 4555668999999999987 578999999999999999996433 345667788999999997655 6678
Q ss_pred eCCCcEEEEeCCCC-cceeecCcccceeEEE
Q 042260 138 DQNGNIRVWDLTAN-SCSCELGLQYGLRTFL 167 (174)
Q Consensus 138 ~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~ 167 (174)
+.||+|+-+|+|+. .+++++..+..-++-+
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl 379 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGL 379 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceE
Confidence 89999999999976 7888876555554433
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.65 E-value=3.8e-15 Score=114.69 Aligned_cols=147 Identities=14% Similarity=0.287 Sum_probs=124.8
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCC-----------
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQP----------- 70 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~----------- 70 (174)
.+.++++++-.||.|.|||+.+...++.+++|...+.+++++++|..+ .++-|..+|.||++.+....
T Consensus 519 pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSL 598 (705)
T KOG0639|consen 519 PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSL 598 (705)
T ss_pred CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheec
Confidence 467788999999999999999999999999999999999999988655 55679999999997553100
Q ss_pred ---------------------------eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEE
Q 042260 71 ---------------------------VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN 123 (174)
Q Consensus 71 ---------------------------~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~ 123 (174)
...+..|..-|+++.|.+.|+++++.+.|..+..|.+.-+..+......+.|.
T Consensus 599 g~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVl 678 (705)
T KOG0639|consen 599 GYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 678 (705)
T ss_pred ccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcce
Confidence 01122456789999999999999999999999999998888887777788999
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 124 TVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
++.++-+.+++++|+.|+...+|.+.
T Consensus 679 sCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 679 SCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred eeeeccCceEEEecCCCcceEEEEEe
Confidence 99999999999999999999888763
No 141
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.63 E-value=7e-15 Score=110.15 Aligned_cols=128 Identities=16% Similarity=0.269 Sum_probs=109.7
Q ss_pred EeecCCCCeEEEEEcCCCce-EEE-ecCCcEEEEEcCCCC-----CCCeEEeecCCCCEEEEEEeeC-CCEEEEecCCCc
Q 042260 30 TIQYPDSQVNRLEITPNKHY-LAA-AGNPHIRLFDVNSSS-----PQPVMSYDQHTNNVMAVGFQCD-GNWMYSGSEDGT 101 (174)
Q Consensus 30 ~~~~~~~~v~~~~~~~~~~~-~~~-~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~dg~ 101 (174)
.+.+|.++|..++|+|-+.. +++ +.|.++.+|++..+. ..++..+.+|...|--++|+|. .+.|+|++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 34567889999999996544 444 357789999997553 2456778899999999999985 557899999999
Q ss_pred EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 102 VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 102 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
|.+|++.+.....++.|...|.++.|+-+|+.+++.+.|+.||+||.+++..+.+.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 99999999998888899999999999999999999999999999999999988876
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.62 E-value=3.3e-15 Score=109.58 Aligned_cols=143 Identities=22% Similarity=0.421 Sum_probs=112.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeE-EeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVM-SYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~ 80 (174)
...++|.||.-|.|||.|+..+++...+..|...|+.+.++|.. .+++++.|..+|+|++++.....+. .+.+|+..
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 35689999999999999999999999999999999999999976 4566778999999999887332222 25689999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCee------EEee-----------------------cccCcEEEEEEccCC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC------QMEY-----------------------ESRAAVNTVVLHPNQ 131 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~------~~~~-----------------------~~~~~v~~~~~~~~~ 131 (174)
|+++.|+.+|.+|++++-|.++++|++..+.. ..++ -|+..|.|+.| -+
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FG 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hh
Confidence 99999999999999999999999999984321 1000 12233445555 24
Q ss_pred CEEEEeeCCCcEEEEeC
Q 042260 132 TELISGDQNGNIRVWDL 148 (174)
Q Consensus 132 ~~l~s~~~d~~i~iwd~ 148 (174)
+++++=|.++.|..|..
T Consensus 262 d~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKP 278 (385)
T ss_pred hheeecccCceEEEEec
Confidence 77888777889999988
No 143
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.8e-14 Score=104.47 Aligned_cols=146 Identities=16% Similarity=0.292 Sum_probs=115.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEee-------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYD------- 75 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~------- 75 (174)
.|.+||.|..||.|.+||..|....+.+..|-.+|.+++|+++|.++.+ +.|..+++||+..+.+.....++
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q 113 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQ 113 (405)
T ss_pred CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceee
Confidence 5678999999999999999998877788888889999999999887654 57889999999877532111110
Q ss_pred cCC-------------------------------------CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc
Q 042260 76 QHT-------------------------------------NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118 (174)
Q Consensus 76 ~~~-------------------------------------~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 118 (174)
-|. ....+..|.+.|++|++|...|.+.++|..+.+++..+.-
T Consensus 114 ~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri 193 (405)
T KOG1273|consen 114 WHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI 193 (405)
T ss_pred eccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee
Confidence 000 0011112566799999999999999999999888866643
Q ss_pred --cCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 119 --RAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 119 --~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.+.|..+.++..+++++.-++|+.||.|+++
T Consensus 194 ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 194 TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred chheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 3689999999999999999999999999998
No 144
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.9e-14 Score=108.21 Aligned_cols=169 Identities=18% Similarity=0.239 Sum_probs=119.0
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
++..|++|+.||++|+|+..+-..+.....|...|.++.|+|+++++++-+....++|+.+++......+...-......
T Consensus 155 ~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~ 234 (398)
T KOG0771|consen 155 DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSS 234 (398)
T ss_pred CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhh
Confidence 55789999999999999977777766666788899999999999988876555999999988722111111122344556
Q ss_pred EEEeeCC-----CEEEEecCCCcEEEEeCCCCee---E---EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 84 VGFQCDG-----NWMYSGSEDGTVKIWDLRAPVC---Q---MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 84 ~~~~~~~-----~~l~t~~~dg~v~iwd~~~~~~---~---~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
+.|..++ +.++.-...+.|+.||+..... . ........|.+++++++|++++.|+-||.|.+++...-+
T Consensus 235 cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq 314 (398)
T KOG0771|consen 235 CRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ 314 (398)
T ss_pred ceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee
Confidence 6677665 3334445567788887643221 1 111224579999999999999999999999999999988
Q ss_pred ceeec-CcccceeEEEEEeec
Q 042260 153 CSCEL-GLQYGLRTFLFYHQD 172 (174)
Q Consensus 153 ~~~~~-~~~~~~~~~~~~~~~ 172 (174)
+.+-. +.+...++=+-|.|+
T Consensus 315 ~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 315 RLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred eeEeehhhheeeeeeEEEcCC
Confidence 77554 344445555555544
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9.3e-14 Score=113.08 Aligned_cols=152 Identities=19% Similarity=0.324 Sum_probs=123.1
Q ss_pred CCcEEEEEeeCCCcEEEEECCCC-ceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSG-RCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.++.+|.+++.||.|++|+...- +....+..+...|.+++... +.+++++.++.+..|....+....++ ..-.-++
T Consensus 23 ~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL--~Rftlp~ 99 (933)
T KOG1274|consen 23 PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTIL--ARFTLPI 99 (933)
T ss_pred CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCcccee--eeeeccc
Confidence 45668999999999999997665 44444443556677776653 47777888999999999887655433 3456789
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
..++++.+|++++.||.|-.|++-++........+ .+..+|.++.++|++++||+.+.||+|++||+.++.+...+
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl 176 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL 176 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc
Confidence 99999999999999999999999998765554444 67899999999999999999999999999999999887554
No 146
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.59 E-value=3.9e-14 Score=113.14 Aligned_cols=169 Identities=14% Similarity=0.235 Sum_probs=132.8
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC---CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN---KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
++++.||+|.+-|++||||+.+-+....+..|++.|.++.++.. .+++++ +.|+-|.+||...+ ..++-++.+|.
T Consensus 469 p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-y~l~qtld~HS 547 (1080)
T KOG1408|consen 469 PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-YDLVQTLDGHS 547 (1080)
T ss_pred CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-cchhhhhcccc
Confidence 46778999999999999999998888888899999999999853 456655 45778999997532 22233333444
Q ss_pred CCEE-------------------------------------------------EEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260 79 NNVM-------------------------------------------------AVGFQCDGNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 79 ~~v~-------------------------------------------------~~~~~~~~~~l~t~~~dg~v~iwd~~~ 109 (174)
..|+ .++..|.-+++++++.|+.|+|||+.+
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 3344 444455667899999999999999999
Q ss_pred CeeEEeecc----cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260 110 PVCQMEYES----RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 110 ~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
.+..+.|.. ....-.+...|.+.+|++...|+++.++|+.+++|+.++..++.+.+=+.|..|
T Consensus 628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 998888853 345677889999999999999999999999999999998877777766665544
No 147
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=2.7e-13 Score=100.88 Aligned_cols=143 Identities=20% Similarity=0.345 Sum_probs=115.1
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecC---CCCeEEEEEcCCCceEEEe---cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYP---DSQVNRLEITPNKHYLAAA---GNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
.|+.+-.+ .|.|||+++-+.++++... ...+..++.++.+.+++-- ..|.+.+||..+- ++....++|.+.
T Consensus 99 RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~aH~~~ 175 (391)
T KOG2110|consen 99 RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTINAHKGP 175 (391)
T ss_pred eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEEecCCc
Confidence 35555555 4999999999988887643 3335566666666777653 3578999998654 566677899999
Q ss_pred EEEEEEeeCCCEEEEecCCCc-EEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 81 VMAVGFQCDGNWMYSGSEDGT-VKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
+.+++|+++|.++||+|+.|+ ||++.+..+....+|..+ ..|.+++|+|++.+|++.|..++|.++.++...
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999999999999999986 799999988888777654 458899999999999999999999999998643
No 148
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=5e-14 Score=109.46 Aligned_cols=155 Identities=23% Similarity=0.391 Sum_probs=119.9
Q ss_pred CcEEEEEeeCCCcEEEEECCC--------CceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCC------
Q 042260 4 PSVILATASYDKTIKFWEAKS--------GRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSP------ 68 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~------ 68 (174)
....|++++.|+++++|+++. -+.+.+++.|.++|.++++.+.+..+. ++-|+.|++|.+..+..
T Consensus 305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence 345689999999999999832 245788999999999999999877655 55699999997753210
Q ss_pred --CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee----------------------------------
Q 042260 69 --QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC---------------------------------- 112 (174)
Q Consensus 69 --~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~---------------------------------- 112 (174)
...-.+.+|...+..+++++....|++++.||++++|+......
T Consensus 385 p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~ 464 (577)
T KOG0642|consen 385 PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYT 464 (577)
T ss_pred cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccc
Confidence 11234568999999999999999999999999999999532100
Q ss_pred -------------------------------E------Eee-----------------------cccCcEEEEEEccCCC
Q 042260 113 -------------------------------Q------MEY-----------------------ESRAAVNTVVLHPNQT 132 (174)
Q Consensus 113 -------------------------------~------~~~-----------------------~~~~~v~~~~~~~~~~ 132 (174)
+ .++ .+...+.++++.|++.
T Consensus 465 ~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~ 544 (577)
T KOG0642|consen 465 SIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGP 544 (577)
T ss_pred cchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCc
Confidence 0 000 1123478999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 133 ELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 133 ~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
+|++++.|+.+++|.+..+.|+.+..
T Consensus 545 ~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 545 YLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eEEeecCCceeehhhccchheeeccc
Confidence 99999999999999999999887765
No 149
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=9.3e-14 Score=101.93 Aligned_cols=101 Identities=19% Similarity=0.358 Sum_probs=76.0
Q ss_pred CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC---C---eeE--Eee-
Q 042260 47 KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA---P---VCQ--MEY- 116 (174)
Q Consensus 47 ~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---~---~~~--~~~- 116 (174)
++++.+ +.|..|.+|++. + +.+...+.........+.+|+|+++++++-.-.|++|.+-. + ... ..+
T Consensus 199 ~k~imsas~dt~i~lw~lk-G--q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLK-G--QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred ceEEEEecCCCcEEEEecC-C--ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 344443 457789999997 3 22333344556667778999999999999999999999632 1 111 222
Q ss_pred cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 117 ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 117 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.|.+.|..++|+|+.+..++++.||++|+||..-
T Consensus 276 GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 276 GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred cchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 4678899999999999999999999999999874
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.58 E-value=1.3e-14 Score=108.94 Aligned_cols=146 Identities=21% Similarity=0.334 Sum_probs=118.2
Q ss_pred EEEEeeCCCcEEEEECCCCce---------eEEeecCCCCeEEEEEcCCCceEEEecC-CcEEEEEcC--------C---
Q 042260 7 ILATASYDKTIKFWEAKSGRC---------YRTIQYPDSQVNRLEITPNKHYLAAAGN-PHIRLFDVN--------S--- 65 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~d-~~i~i~d~~--------~--- 65 (174)
.++||+.|..||+|.++.++. +..+..|...|+.+.|+|++.++++++| +.+.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 799999999999998765432 2334567888999999999999998765 568999765 1
Q ss_pred ---CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCC
Q 042260 66 ---SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNG 141 (174)
Q Consensus 66 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~ 141 (174)
+.+........|...+-.++|+++++++++++-|..+++||++.+.....+ .+..-++-++|.|-..++++-+.|.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 112333456678999999999999999999999999999999998876655 5677899999999999999999998
Q ss_pred cEEEEeCCCCc
Q 042260 142 NIRVWDLTANS 152 (174)
Q Consensus 142 ~i~iwd~~~~~ 152 (174)
..+.+.+...+
T Consensus 188 ~~~~~~~~~~~ 198 (434)
T KOG1009|consen 188 HPEGFSAKLKQ 198 (434)
T ss_pred ccceeeeeeee
Confidence 77777766544
No 151
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=8.1e-14 Score=102.75 Aligned_cols=155 Identities=18% Similarity=0.289 Sum_probs=114.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec--CC-CCeEEEEEcCCCceEEEe-----cCCcEEEEEcCCCCCCCeEEee
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PD-SQVNRLEITPNKHYLAAA-----GNPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~ 75 (174)
..+.+.+|+.||+||+||++.......+.. +. .+..+++.+-.+.+++.+ .+..+.+||++..+...-.-.+
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 356788999999999999998766555543 22 345566555345555554 2567899999876431111235
Q ss_pred cCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe----eEEeecccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCC
Q 042260 76 QHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV----CQMEYESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLT 149 (174)
Q Consensus 76 ~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~ 149 (174)
.|...|+.+.|.| +.+.++|||-||.|.++|++... ...++.+...|..+.|+-++ ..|.+-+..++..+|+++
T Consensus 163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 6899999999998 68899999999999999998652 23445667889999998765 458888889999999999
Q ss_pred CCcceeecC
Q 042260 150 ANSCSCELG 158 (174)
Q Consensus 150 ~~~~~~~~~ 158 (174)
.+.+.-.++
T Consensus 243 ~~~~~~~~~ 251 (376)
T KOG1188|consen 243 DGSEETWLE 251 (376)
T ss_pred CCChhhccc
Confidence 988664444
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.7e-13 Score=104.51 Aligned_cols=160 Identities=15% Similarity=0.317 Sum_probs=130.6
Q ss_pred CcEEEEEeeCCCcEEEEECC--CCceeEEeecCCCCeEEEEEcCCCc-eEEEec-CCcEEEEEcCCCCCCCeEEeecCC-
Q 042260 4 PSVILATASYDKTIKFWEAK--SGRCYRTIQYPDSQVNRLEITPNKH-YLAAAG-NPHIRLFDVNSSSPQPVMSYDQHT- 78 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~- 78 (174)
...++++++.|++++||.+. ++..++++.....+|..+.|.|+|. .+++++ -..+..||+.+.+...+..+.++.
T Consensus 224 ~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~ 303 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE 303 (514)
T ss_pred CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCccc
Confidence 35689999999999999764 4556788888888999999999988 454444 456899999887766554443433
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
..+.....++++++|+..+..|.|.+--..+...+..+.....|.+++|+-++..|++.+.+|.|.+||++..+|...+.
T Consensus 304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV 383 (514)
T ss_pred chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence 34666778899999999999999999988888888888888999999999999999999899999999999999987765
Q ss_pred cccce
Q 042260 159 LQYGL 163 (174)
Q Consensus 159 ~~~~~ 163 (174)
-+..+
T Consensus 384 D~G~v 388 (514)
T KOG2055|consen 384 DDGSV 388 (514)
T ss_pred ecCcc
Confidence 44444
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.1e-14 Score=120.50 Aligned_cols=167 Identities=23% Similarity=0.378 Sum_probs=119.2
Q ss_pred EEEEEeeCCCcEEEEECCC---Cc---eeEEeecCCCCeEEEEEcCCCc-eEEEe-cCCcEEEEEcCCCCCCCeEEeecC
Q 042260 6 VILATASYDKTIKFWEAKS---GR---CYRTIQYPDSQVNRLEITPNKH-YLAAA-GNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
.+|+.|..||.|.+||... +. .+.....|.+.|.+++|++.+. +++++ .++.|.|||+...+..........
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 4799999999999999654 22 3455667889999999999654 66655 578899999976432222212335
Q ss_pred CCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCC-CEEEEeeCCC---cEEEEeCC
Q 042260 78 TNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQ-TELISGDQNG---NIRVWDLT 149 (174)
Q Consensus 78 ~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~-~~l~s~~~d~---~i~iwd~~ 149 (174)
.+.|.+++|+.. ...|++++.+|.+-|||+|..+.+..+.. +..+..++|||+. ..|++++.|. .|.+||+|
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 678999999863 55689999999999999998766655533 2458999999975 4577666554 59999999
Q ss_pred CCcceee-c-CcccceeEEEEEeec
Q 042260 150 ANSCSCE-L-GLQYGLRTFLFYHQD 172 (174)
Q Consensus 150 ~~~~~~~-~-~~~~~~~~~~~~~~~ 172 (174)
......+ + .++.++.++---++|
T Consensus 241 ~assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 241 FASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred ccCCchhhhcccccceeeeccCCCC
Confidence 6544433 2 466666665544443
No 154
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=9.3e-13 Score=93.28 Aligned_cols=135 Identities=15% Similarity=0.346 Sum_probs=97.1
Q ss_pred cEEEEECCC-CceeEEeec-CCCCeEEEEEcCCCceEEEe---cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260 16 TIKFWEAKS-GRCYRTIQY-PDSQVNRLEITPNKHYLAAA---GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG 90 (174)
Q Consensus 16 ~v~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 90 (174)
...+|.++. +..+..+.. ...+|.+++|+|++..++.. .+..+.+||++. ..+..+ +...+..+.|+|+|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~~--~~~~~n~i~wsP~G 112 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFSF--GTQPRNTISWSPDG 112 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEee--cCCCceEEEECCCC
Confidence 355555522 334444443 24469999999988765432 345799999962 333333 35667789999999
Q ss_pred CEEEEecCC---CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC------CCcEEEEeCCCCcceeec
Q 042260 91 NWMYSGSED---GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ------NGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 91 ~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~ 157 (174)
+++++++.+ |.|.+||++..+.+.+.++. .+..++|+|+|++|++++. |..++||++. ++.+++.
T Consensus 113 ~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 113 RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 999998754 66999999988887776654 4789999999999998754 6789999985 5555554
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.4e-14 Score=118.62 Aligned_cols=164 Identities=18% Similarity=0.285 Sum_probs=119.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEe--ecCCCCeEEEEEcCC-CceEEEe-cCCcEEEEEcCCCCCCCeEEeecC--C
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTI--QYPDSQVNRLEITPN-KHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQH--T 78 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~--~ 78 (174)
+.+||+|+.||.|.|||+++-+..... ......|.+++|+.. ..+++++ .++.+-|||++..+. +..+..+ +
T Consensus 129 ~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii~ls~~~~~ 206 (1049)
T KOG0307|consen 129 GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP--IIKLSDTPGR 206 (1049)
T ss_pred CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc--ccccccCCCc
Confidence 458999999999999999875443322 123457999999874 4455554 566899999998743 4443333 3
Q ss_pred CCEEEEEEeeCCC-EEEEecCCC---cEEEEeCCCCe-eEEee-cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCC
Q 042260 79 NNVMAVGFQCDGN-WMYSGSEDG---TVKIWDLRAPV-CQMEY-ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 79 ~~v~~~~~~~~~~-~l~t~~~dg---~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~ 151 (174)
..+..++|+|+.- .+++++.|. .|.+||+|... ....+ .|...|.++.|++.+ .+|++++.|+.|.+||.+++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 5688999998644 455555543 69999998643 23344 567889999999977 67889999999999999999
Q ss_pred cceeecCcccceeEEEEEe
Q 042260 152 SCSCELGLQYGLRTFLFYH 170 (174)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~ 170 (174)
+.+.+++.+.+-+.=+.+-
T Consensus 287 Evl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred eEeeecCCCCcceeeeeec
Confidence 9999988766665544443
No 156
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.55 E-value=1.5e-13 Score=111.06 Aligned_cols=168 Identities=15% Similarity=0.200 Sum_probs=135.0
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEe---ecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCCeEEeecC
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTI---QYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
-.||.+.+.|+..|+|-+|+.+.|-...++ ..|+.+|.+++....+..+ +++.+|.++.||..... ++..+. -
T Consensus 457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~--l~~~l~-l 533 (910)
T KOG1539|consen 457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV--LKKSLR-L 533 (910)
T ss_pred eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc--eeeeec-c
Confidence 357888899999999999999999888887 4688899999998877655 45678999999997653 222222 2
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
...+.++.++.....++.+..|-.|+++|+.+.+.+..|. |...|++++|+|+|+-|++++-|++||+||+-++.+.--
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 3567777888888889999999999999999988888775 788999999999999999999999999999999877654
Q ss_pred cCcccceeEEEEEeecC
Q 042260 157 LGLQYGLRTFLFYHQDM 173 (174)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ 173 (174)
+.. ..++..+.+.|++
T Consensus 614 ~~v-d~~~~sls~SPng 629 (910)
T KOG1539|consen 614 LLV-DSPCTSLSFSPNG 629 (910)
T ss_pred Eec-CCcceeeEECCCC
Confidence 432 3445555555554
No 157
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.55 E-value=1.8e-13 Score=99.27 Aligned_cols=148 Identities=20% Similarity=0.419 Sum_probs=111.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCce--eEE-eecCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEeecC--
Q 042260 5 SVILATASYDKTIKFWEAKSGRC--YRT-IQYPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSYDQH-- 77 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~--~~~-~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-- 77 (174)
..+|.++|-|-|..|||+++|.. +.+ +-.|+.+|.+++|...+ .+.+.+.||.+|+||++..+- ....|+..
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~ 241 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSP 241 (364)
T ss_pred cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-ceEEecCCCC
Confidence 45799999999999999999743 222 23588899999999844 344456899999999987542 22334332
Q ss_pred CCCEEEEEEee-CCCEEEEecCC-CcEEEEeCCCCeeE-Ee-ecccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCCc
Q 042260 78 TNNVMAVGFQC-DGNWMYSGSED-GTVKIWDLRAPVCQ-ME-YESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 78 ~~~v~~~~~~~-~~~~l~t~~~d-g~v~iwd~~~~~~~-~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~ 152 (174)
..+...++|++ +.+++||-..| ..|.|-|+|.++.. .. ..|...|+.++|.|.. ..+.+++.|.++.|||+....
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 45678888886 67788875554 46999999987643 22 3578899999999965 568899999999999998654
Q ss_pred c
Q 042260 153 C 153 (174)
Q Consensus 153 ~ 153 (174)
.
T Consensus 322 ~ 322 (364)
T KOG0290|consen 322 R 322 (364)
T ss_pred c
Confidence 3
No 158
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=8.8e-13 Score=93.72 Aligned_cols=156 Identities=21% Similarity=0.360 Sum_probs=110.9
Q ss_pred EEEEeeCCCcEEEEECCCCce------eEEee-------cCCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCCCCCeE
Q 042260 7 ILATASYDKTIKFWEAKSGRC------YRTIQ-------YPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~------~~~~~-------~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~ 72 (174)
+|++|+ ||.|+-|..+.... +-..+ ..-..|+.+...|. +.++.+++|+.+..||+++++ ...
T Consensus 74 ~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~--i~r 150 (325)
T KOG0649|consen 74 FLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR--IQR 150 (325)
T ss_pred heeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE--EEE
Confidence 466666 59999998654321 11111 11235889999974 567777899999999999984 456
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc-----------CcEEEEEEccCCCEEEEeeCCC
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-----------AAVNTVVLHPNQTELISGDQNG 141 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~~~d~ 141 (174)
.+.+|++-+.++.--.....+.+|++||++|+||.++.+++..++.. .-|-+++. ++.-+++| ...
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCG-gGp 227 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCG-GGP 227 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEec-CCC
Confidence 78899999999986444557899999999999999998887665421 12445444 45556655 456
Q ss_pred cEEEEeCCCCcceeecCcccceeEEEE
Q 042260 142 NIRVWDLTANSCSCELGLQYGLRTFLF 168 (174)
Q Consensus 142 ~i~iwd~~~~~~~~~~~~~~~~~~~~~ 168 (174)
.+.+|.+++..|++-++-+.++.--.|
T Consensus 228 ~lslwhLrsse~t~vfpipa~v~~v~F 254 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPARVHLVDF 254 (325)
T ss_pred ceeEEeccCCCceEEEecccceeEeee
Confidence 799999999998888776666644333
No 159
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=5.4e-13 Score=99.91 Aligned_cols=160 Identities=18% Similarity=0.357 Sum_probs=123.4
Q ss_pred CCcEEEEEeeCC--CcEEEEECCCCceeEEeecCC-------CCe--EEEEEcCC--C-ceEEEecCCcEEEEEcCCCCC
Q 042260 3 QPSVILATASYD--KTIKFWEAKSGRCYRTIQYPD-------SQV--NRLEITPN--K-HYLAAAGNPHIRLFDVNSSSP 68 (174)
Q Consensus 3 ~~~~~l~s~s~D--~~v~vwd~~~~~~~~~~~~~~-------~~v--~~~~~~~~--~-~~~~~~~d~~i~i~d~~~~~~ 68 (174)
+...++++||.. .-+++||+++.+.+.+-+... -+| +++.|-+. . .++.+..-+++|+||.+. +.
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~-qR 237 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH-QR 237 (412)
T ss_pred CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcc-cC
Confidence 456688899999 889999999875544433211 133 35666554 3 444455678899999985 45
Q ss_pred CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-e-cccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260 69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-Y-ESRAAVNTVVLHPNQTELISGDQNGNIRVW 146 (174)
Q Consensus 69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 146 (174)
.|+..+.-....++++...|.+++|++|..-+.+..+|+++.+.... + .....|.++..+|+.++++++|-|+.+||+
T Consensus 238 RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 238 RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH 317 (412)
T ss_pred cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence 77888887888999999999999999999999999999999876654 3 346789999999999999999999999999
Q ss_pred eCCCCcceeecCcccce
Q 042260 147 DLTANSCSCELGLQYGL 163 (174)
Q Consensus 147 d~~~~~~~~~~~~~~~~ 163 (174)
|+.+.....+-=.+..+
T Consensus 318 D~ktrkll~kvYvKs~l 334 (412)
T KOG3881|consen 318 DIKTRKLLHKVYVKSRL 334 (412)
T ss_pred ecccchhhhhhhhhccc
Confidence 99996655554333333
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.54 E-value=4.3e-14 Score=111.72 Aligned_cols=142 Identities=17% Similarity=0.313 Sum_probs=109.1
Q ss_pred EEEEEeeCCCcEEEEECCCCc-------eeEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCCCeEEeec
Q 042260 6 VILATASYDKTIKFWEAKSGR-------CYRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
+.|+.+..||.|++|.+..+. ....+..|...|+.+.|+|- +.+.+++.|-+|++||+++.... ..+.+
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~--~~l~g 718 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY--SRLVG 718 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh--heecc
Confidence 358999999999999976542 23445677788999999993 44556678999999999987543 34679
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc----CcEEEEEEccCCCEEEEeeCCC----cEEEEeC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR----AAVNTVVLHPNQTELISGDQNG----NIRVWDL 148 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~d~----~i~iwd~ 148 (174)
|+++|.+++|+++|+.++|.+.||++++|..++...-. ++.+ .+--.+.|.-+++++++.+-|+ +|.+||-
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv-~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV-YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc-ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 99999999999999999999999999999988754322 1222 2335677888999988776654 5788877
Q ss_pred CC
Q 042260 149 TA 150 (174)
Q Consensus 149 ~~ 150 (174)
++
T Consensus 798 q~ 799 (1012)
T KOG1445|consen 798 QT 799 (1012)
T ss_pred hh
Confidence 64
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.52 E-value=1e-12 Score=96.74 Aligned_cols=147 Identities=22% Similarity=0.401 Sum_probs=112.3
Q ss_pred CcEEEEEeeCCCcEEEEECCC-C--ceeEEeec--CCCCeEEEEEcC----CCceEEEec-CCcEEEEEcCCCCCCCeEE
Q 042260 4 PSVILATASYDKTIKFWEAKS-G--RCYRTIQY--PDSQVNRLEITP----NKHYLAAAG-NPHIRLFDVNSSSPQPVMS 73 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~-~--~~~~~~~~--~~~~v~~~~~~~----~~~~~~~~~-d~~i~i~d~~~~~~~~~~~ 73 (174)
..++++|+|.+ .+.+|.... + ..++++.. ++.....++|.- .+.++++++ -|.||+.|+.++ +....
T Consensus 54 e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~ 130 (385)
T KOG1034|consen 54 EPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKN 130 (385)
T ss_pred CCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccc
Confidence 44578888866 588888543 3 23444432 334455566652 245665544 567899999776 44556
Q ss_pred eecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeec----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 74 YDQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE----SRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 74 ~~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
+.+|...|..+.+.|. .++++++|.|..||+|++++..|+..+. |+..|.++.|++++..+++++-|-++++|++
T Consensus 131 ~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l 210 (385)
T KOG1034|consen 131 YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRL 210 (385)
T ss_pred eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEec
Confidence 7789999999999984 6799999999999999999999987773 6788999999999999999999999999999
Q ss_pred CCCcc
Q 042260 149 TANSC 153 (174)
Q Consensus 149 ~~~~~ 153 (174)
..++.
T Consensus 211 ~~~~f 215 (385)
T KOG1034|consen 211 NVKEF 215 (385)
T ss_pred ChhHH
Confidence 96543
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.52 E-value=1.1e-11 Score=94.66 Aligned_cols=151 Identities=30% Similarity=0.577 Sum_probs=118.8
Q ss_pred cEEEEEeeC-CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEE-ecCCcEEEEEcCCCCCCCeE-EeecCCCC
Q 042260 5 SVILATASY-DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAA-AGNPHIRLFDVNSSSPQPVM-SYDQHTNN 80 (174)
Q Consensus 5 ~~~l~s~s~-D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~~~~~~~~~~-~~~~~~~~ 80 (174)
+..+++++. |+.+++|+..++..+..+..|...+..+.++|.+. ++++ +.|+.+++||...+ .... .+..|...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~ 244 (466)
T COG2319 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG--KLLRSTLSGHSDS 244 (466)
T ss_pred CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC--cEEeeecCCCCcc
Confidence 336777775 99999999999888888888888999999998886 5555 57889999988743 2233 45667666
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
. ...|++++.++++++.|+.+++||++.... .... .+...+.++.+.|++..+++++.|+.+++||++.........
T Consensus 245 ~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 245 V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 5 447889888999999999999999986553 3222 456789999999988888888889889999999877655543
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.50 E-value=6.1e-13 Score=96.51 Aligned_cols=141 Identities=17% Similarity=0.293 Sum_probs=107.1
Q ss_pred eeCCCcEEEEECCCCce-eEEeecC-----CCCeEEEEEcC--CCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 11 ASYDKTIKFWEAKSGRC-YRTIQYP-----DSQVNRLEITP--NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 11 ~s~D~~v~vwd~~~~~~-~~~~~~~-----~~~v~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+..|..|.+|++..+.. +..+... .....+-.|+| ++..+++.+|+.+..||+++.... ....+.|...+.
T Consensus 140 sm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~-~sI~dAHgq~vr 218 (370)
T KOG1007|consen 140 SMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN-NSIEDAHGQRVR 218 (370)
T ss_pred EeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh-cchhhhhcceee
Confidence 44488999999988766 4444322 23355667887 677888889999999999975422 222457888899
Q ss_pred EEEEeeCCC-EEEEecCCCcEEEEeCCCCee-EEee-cccCcEEEEEEccC-CCEEEEeeCCCcEEEEeCCCCc
Q 042260 83 AVGFQCDGN-WMYSGSEDGTVKIWDLRAPVC-QMEY-ESRAAVNTVVLHPN-QTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 83 ~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
.+.|+|+.. .|+||+.||.|+|||.|..+. +.++ .|..-|.++.|+|. +..+++|++|..|.+|....-+
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 999999755 689999999999999987543 3333 45667999999995 5667899999999999988654
No 164
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=5.5e-14 Score=107.30 Aligned_cols=140 Identities=20% Similarity=0.362 Sum_probs=114.6
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
-+|++++..|.++.-|+.+|+.+..+....+.+..+..+|-+..+-. ..+|.+.+|..... .++..+-+|.+.|.++
T Consensus 222 fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk--ePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 222 FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK--EPLVKILCHRGPVSSI 299 (545)
T ss_pred heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--chHHHHHhcCCCcceE
Confidence 46889999999999999999999999877778888999997766544 47889999998765 5566677999999999
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
++.++|++++|.+.|..++|||+|......++..+.+...++++..+ +++.+....|.||.=.
T Consensus 300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDA 362 (545)
T ss_pred EECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhh
Confidence 99999999999999999999999987766666666777888886543 4444455579999533
No 165
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.50 E-value=1.4e-13 Score=108.84 Aligned_cols=146 Identities=16% Similarity=0.262 Sum_probs=111.8
Q ss_pred eeCCCcEEEEECCCCc-e----eEEeecCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCC-----CCCeEEeecCC
Q 042260 11 ASYDKTIKFWEAKSGR-C----YRTIQYPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSS-----PQPVMSYDQHT 78 (174)
Q Consensus 11 ~s~D~~v~vwd~~~~~-~----~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~ 78 (174)
+|--|.|-||+++... . +..+ .....|.++.|+|- ..+.+++.|+.|++|-+.++. ..+...+..|.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence 4557889999987532 2 2222 23457899999983 345556788899999987653 24445567899
Q ss_pred CCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-cee
Q 042260 79 NNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS-CSC 155 (174)
Q Consensus 79 ~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~ 155 (174)
.+|..+.|+|- ...+++++.|.+|++||++.......+ .|...|..++|+|+|+.+++.+.||+|++|+.+... -++
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence 99999999984 567899999999999999876543333 677899999999999999999999999999999754 444
Q ss_pred ec
Q 042260 156 EL 157 (174)
Q Consensus 156 ~~ 157 (174)
+.
T Consensus 758 Eg 759 (1012)
T KOG1445|consen 758 EG 759 (1012)
T ss_pred cC
Confidence 43
No 166
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=7.5e-13 Score=96.63 Aligned_cols=145 Identities=19% Similarity=0.310 Sum_probs=108.0
Q ss_pred cEEEEEeeCCCcEEEEECCCC------ceeEEee-------cCCCCeEEEEEcCC---CceEEEecCC------cEEEEE
Q 042260 5 SVILATASYDKTIKFWEAKSG------RCYRTIQ-------YPDSQVNRLEITPN---KHYLAAAGNP------HIRLFD 62 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~------~~~~~~~-------~~~~~v~~~~~~~~---~~~~~~~~d~------~i~i~d 62 (174)
+..||+++.||.+|||+.-.. ...+.++ .+..+..++.|+|. ..+++.+.+. .++||.
T Consensus 126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 457999999999999985432 2223332 13445778899874 3567666555 788998
Q ss_pred cCCC--CCCCeEEeecCCCCEEEEEEeeC----CCEEEEecCCCcEEEEeCCCCe--------------------eEEee
Q 042260 63 VNSS--SPQPVMSYDQHTNNVMAVGFQCD----GNWMYSGSEDGTVKIWDLRAPV--------------------CQMEY 116 (174)
Q Consensus 63 ~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~~~~--------------------~~~~~ 116 (174)
...+ +...+..+..|...|.+++|.|+ -..||+++.|| |+||.++..+ .+..+
T Consensus 206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL 284 (361)
T ss_pred ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence 7554 34455567789999999999985 23699999999 9999987311 11223
Q ss_pred -cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 117 -ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 117 -~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.|+.+|..+.|+-.|..|++.|.||.||+|..+.
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 3567899999999999999999999999999874
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.5e-12 Score=107.89 Aligned_cols=145 Identities=22% Similarity=0.422 Sum_probs=107.5
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCCC-CCeEEeecCCCC-
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSSP-QPVMSYDQHTNN- 80 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~- 80 (174)
..|+++|.-+.|||||.......+.+... +..++.+.-+. .+.+++ +..||.+|+||.+.... ..+..+..|+..
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 34555555889999999998888887643 44566664443 345554 45899999999976543 234556778777
Q ss_pred -EEEEEEeeCCCE-EEEecCCCcEEEEeCCCCeeE------EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 81 -VMAVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQ------MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 81 -v~~~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
|..+.+.++|-. +++|+.||.|++||+|..... .+.+.++..+++..|+....+|+|+. +.|+||++.-.
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 899999886664 999999999999999984221 11122345899999999999999998 89999998754
No 168
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.49 E-value=5.1e-13 Score=106.91 Aligned_cols=113 Identities=21% Similarity=0.371 Sum_probs=91.3
Q ss_pred eEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeE-EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe
Q 042260 38 VNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVM-SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115 (174)
Q Consensus 38 v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~ 115 (174)
+.+++..|..++++ ++.|..|||||+.+++..... ....|.+....+...|.|.++++.+.|.++.++|.-+.+|+.+
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 34555666655554 456889999999887543322 2334667788899999999999999999999999999888765
Q ss_pred e-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 116 Y-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 116 ~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
. .|...|+.+.|.++.+.|++++.||.|.+|.+.-
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 4 6677899999999999999999999999999874
No 169
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.49 E-value=7.5e-13 Score=102.93 Aligned_cols=124 Identities=23% Similarity=0.374 Sum_probs=90.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
++.-|+|+|.||.||+|. ++|....++.....+|.+++|.|+..-++-...+++.|=.+..+ ..+..+..|.+-|.+
T Consensus 115 dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n--~k~i~WkAHDGiiL~ 191 (737)
T KOG1524|consen 115 DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAAN--SKIIRWRAHDGLVLS 191 (737)
T ss_pred CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccc--cceeEEeccCcEEEE
Confidence 456689999999999996 56665555555567899999999766555555567777666554 345678899999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPN 130 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 130 (174)
+.|++..+.+++|++|-..++||-.....-....+..+|++++|+|+
T Consensus 192 ~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 192 LSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred eecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc
Confidence 99999999999999999999999754221111123344444444444
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.47 E-value=2.1e-11 Score=93.08 Aligned_cols=144 Identities=32% Similarity=0.621 Sum_probs=113.0
Q ss_pred EEEE-eeCCCcEEEEECCC-CceeEEeecCCCCeEEEEEcCCCceEEEec--CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 7 ILAT-ASYDKTIKFWEAKS-GRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 7 ~l~s-~s~D~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+++. +..|+.+++||... ......+..|...+..+.|+|.+..++.+. ++.+++|+.... .....+..|...+.
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~ 202 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAGHTDPVS 202 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeeccCCCceE
Confidence 3444 45599999999998 777888888888899999999987655543 889999999764 34555667899999
Q ss_pred EEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEE-eec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 83 AVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQM-EYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 83 ~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
+++|.+++. .+++++.|+.+++||.+...... .+. +.... ...|+|++..+++++.|+.+++||++....
T Consensus 203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 999999887 56666999999999988655554 333 33332 227999998888999999999999997654
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.46 E-value=2.7e-12 Score=97.93 Aligned_cols=165 Identities=13% Similarity=0.223 Sum_probs=121.6
Q ss_pred EEEEeeCCCcEEEEECCCCce-eEEeecCCCCeEEEEEcCCCc-eEE-EecCCcEEEEEcCCCCCCC--eEEeecCCCCE
Q 042260 7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKH-YLA-AAGNPHIRLFDVNSSSPQP--VMSYDQHTNNV 81 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~v 81 (174)
.++.+..=|...+||.+++.. ..-+..|+..|++++++|... +++ ++.|++++|||++.-..+. .+..-.|+..|
T Consensus 293 ~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV 372 (498)
T KOG4328|consen 293 SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV 372 (498)
T ss_pred cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee
Confidence 455666666899999988654 555666777999999999754 344 4568899999997643332 34344689999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCC----CCeeEEeeccc------CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLR----APVCQMEYESR------AAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~----~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.+..|+|.+..|+|.+.|..|+|||.. ......++.|. -.....+|.|+.+++++|-.-..|-++|-+.+
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 999999988889999999999999983 33333333332 12456789999999999988888999999999
Q ss_pred cceeec--CcccceeEEEEEee
Q 042260 152 SCSCEL--GLQYGLRTFLFYHQ 171 (174)
Q Consensus 152 ~~~~~~--~~~~~~~~~~~~~~ 171 (174)
+.++++ +.+..+....-+||
T Consensus 453 q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 453 QMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred EEeeeccCccccccccceeecc
Confidence 977774 44445555555565
No 172
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.46 E-value=1.3e-12 Score=101.40 Aligned_cols=124 Identities=18% Similarity=0.384 Sum_probs=91.3
Q ss_pred CCcEEEEEeeCCCcEEEEECCC--------------C--------------ceeEEeecCCCCeEEEEEcCCCceEEE-e
Q 042260 3 QPSVILATASYDKTIKFWEAKS--------------G--------------RCYRTIQYPDSQVNRLEITPNKHYLAA-A 53 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~--------------~--------------~~~~~~~~~~~~v~~~~~~~~~~~~~~-~ 53 (174)
.+..+++.+=.+|.+.+||.+- + ..+..+......|+..+|+|++.+++. +
T Consensus 230 g~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS 309 (636)
T KOG2394|consen 230 GSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVS 309 (636)
T ss_pred CCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEe
Confidence 3455677788899999997531 1 111222223346788899999998875 5
Q ss_pred cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-ecccCcEEEEEEc
Q 042260 54 GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-YESRAAVNTVVLH 128 (174)
Q Consensus 54 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~ 128 (174)
.|+.+||||..+.++..+. .---+..++++|+|||++|++|++|..|.||.+...+++.. ..|++-|..++|.
T Consensus 310 qDGfLRvF~fdt~eLlg~m--kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 310 QDGFLRIFDFDTQELLGVM--KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cCceEEEeeccHHHHHHHH--HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 7999999999876433222 22346799999999999999999999999999988776643 4577888888887
No 173
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=4.5e-11 Score=89.20 Aligned_cols=163 Identities=13% Similarity=0.206 Sum_probs=118.9
Q ss_pred EEEEEeeCCCc--EEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee---cCCCC
Q 042260 6 VILATASYDKT--IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---QHTNN 80 (174)
Q Consensus 6 ~~l~s~s~D~~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~ 80 (174)
.++|-.+.+.. +++.+.+.+..+..+..+ ..|.++.++.+. +++ .-...|.|||+++.++ +.+.+ .+...
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp-t~IL~VrmNr~R-LvV-~Lee~IyIydI~~Mkl--LhTI~t~~~n~~g 131 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFP-TSILAVRMNRKR-LVV-CLEESIYIYDIKDMKL--LHTIETTPPNPKG 131 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEecC-CceEEEEEccce-EEE-EEcccEEEEeccccee--ehhhhccCCCccc
Confidence 34544444444 999999999999888765 469999887653 333 3345599999987643 32222 33445
Q ss_pred EEEEEEeeCCCEEEEec--CCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCc-EEEEeCCCCcceee
Q 042260 81 VMAVGFQCDGNWMYSGS--EDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGN-IRVWDLTANSCSCE 156 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~ 156 (174)
+.++..+..+.+++--+ .-|.|.+||..+...+.++. |+.++.+++|+++|..+|+++..|+ ||++.+.+++.+++
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 66766666666766532 35899999999888777775 6789999999999999999999887 89999999999999
Q ss_pred cCcccce--eEEEEEeecC
Q 042260 157 LGLQYGL--RTFLFYHQDM 173 (174)
Q Consensus 157 ~~~~~~~--~~~~~~~~~~ 173 (174)
++-.... +-.+.||+++
T Consensus 212 FRRG~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDS 230 (391)
T ss_pred eeCCceeeEEEEEEECCCC
Confidence 8633222 4556667665
No 174
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=5.6e-12 Score=99.09 Aligned_cols=152 Identities=25% Similarity=0.415 Sum_probs=110.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc--eEEEecCCcEEEEEcCCC---------------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH--YLAAAGNPHIRLFDVNSS--------------- 66 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~--------------- 66 (174)
.+..|++||.||+||||.+.+|.|+..+... +.|.+++|+|.+. +++++-+..+.|.+---+
T Consensus 411 ~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~ 489 (733)
T KOG0650|consen 411 SGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASA 489 (733)
T ss_pred CcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcC
Confidence 4567999999999999999999999999865 4799999999643 444443222322221000
Q ss_pred ----C----------------CCCeEEeecCCCCEEEEEEeeCCCEEEEecCC---CcEEEEeCCCCeeEEee-cccCcE
Q 042260 67 ----S----------------PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED---GTVKIWDLRAPVCQMEY-ESRAAV 122 (174)
Q Consensus 67 ----~----------------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~-~~~~~v 122 (174)
. ...+...-.|...+..+.|+..|.+|++...+ ..|.|.++.....+..| ..+.-|
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v 569 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV 569 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence 0 00011122467889999999999999997664 57999999887777666 346779
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
+++.|+|...+++.+++. .|||||+.....+-++
T Consensus 570 q~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL 603 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKL 603 (733)
T ss_pred eEEEecCCCceEEEEecc-ceEEEehhHHHHHHHH
Confidence 999999999999988764 7999999986655444
No 175
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=6.3e-11 Score=86.98 Aligned_cols=98 Identities=19% Similarity=0.421 Sum_probs=82.3
Q ss_pred CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCc-EEEEeCCCCeeEEeecc---cCcEEEEEEccC
Q 042260 55 NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT-VKIWDLRAPVCQMEYES---RAAVNTVVLHPN 130 (174)
Q Consensus 55 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~ 130 (174)
-|++.|-|+......+....++|...+.+++.+.+|..+||+|..|+ |||||..++....++.. +..|.+++|+|+
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 46677777766544334556789999999999999999999999886 89999999888777754 467999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCc
Q 042260 131 QTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
...|+++|.-|++.++.++...
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecCC
Confidence 9999999999999999998643
No 176
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=7.4e-12 Score=95.67 Aligned_cols=144 Identities=18% Similarity=0.373 Sum_probs=112.0
Q ss_pred CcE-EEEEeeCCCcEEEEECCCCceeEEe--ecC-CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 4 PSV-ILATASYDKTIKFWEAKSGRCYRTI--QYP-DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 4 ~~~-~l~s~s~D~~v~vwd~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
+++ .++++|.-+-+..||+++.+....- ... ...+....+++++.+++.. -.+.|.+.-..+++... .+. ..
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~--s~K-ie 344 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT--SFK-IE 344 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh--eee-ec
Confidence 344 8899999999999999887653221 111 2346677888988877654 56778887766664433 232 35
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE--EEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV--NTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
+.+..+.|+++++.|+..+.+|.|.+||+++..|+..+.....| .+++.++++.+||+|+..|.|.|||.++
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 78999999999999999999999999999999999888655554 6778889999999999999999999774
No 177
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.43 E-value=3.4e-12 Score=101.59 Aligned_cols=146 Identities=19% Similarity=0.346 Sum_probs=113.6
Q ss_pred CcEEEEEeeCCCc-----EEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCC--CCeEEee
Q 042260 4 PSVILATASYDKT-----IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSP--QPVMSYD 75 (174)
Q Consensus 4 ~~~~l~s~s~D~~-----v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~--~~~~~~~ 75 (174)
.+.++||+..... |++|+..+...+..+..|.--|+.++|+|+++++. .+-|+++.+|....... ......+
T Consensus 536 ~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k 615 (764)
T KOG1063|consen 536 TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLK 615 (764)
T ss_pred CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccc
Confidence 4667777766443 89999999888888889998999999999998765 46799999998743211 1122356
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC--eeEEe---ecccCcEEEEEEccC-CC----EEEEeeCCCcEEE
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQME---YESRAAVNTVVLHPN-QT----ELISGDQNGNIRV 145 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~---~~~~~~v~~~~~~~~-~~----~l~s~~~d~~i~i 145 (174)
.|+.-|.++.|+|++.+|+|+|.|..|++|..... +.+.. .....+|+.+++.|- .+ .|+.|-+.|.|.+
T Consensus 616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l 695 (764)
T KOG1063|consen 616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL 695 (764)
T ss_pred ccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence 79999999999999999999999999999998765 33322 345678888888763 22 5778889999999
Q ss_pred EeCC
Q 042260 146 WDLT 149 (174)
Q Consensus 146 wd~~ 149 (174)
|...
T Consensus 696 ~~~~ 699 (764)
T KOG1063|consen 696 WRRK 699 (764)
T ss_pred Eecc
Confidence 9966
No 178
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6.2e-11 Score=86.78 Aligned_cols=149 Identities=18% Similarity=0.311 Sum_probs=108.5
Q ss_pred CcEEEEEeeCCCcEEEEECCC----CceeEEeecCCCCeEEEEEcCC--CceEEE-ecCCcEEEEEcCC-------CCCC
Q 042260 4 PSVILATASYDKTIKFWEAKS----GRCYRTIQYPDSQVNRLEITPN--KHYLAA-AGNPHIRLFDVNS-------SSPQ 69 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~--~~~~~~-~~d~~i~i~d~~~-------~~~~ 69 (174)
-|+.+||||.|++|+|||.+. ..+-...+.|++.|..+.|.+. |..+++ +.|++++||.-.. .++.
T Consensus 24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv 103 (361)
T KOG2445|consen 24 YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWV 103 (361)
T ss_pred cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeE
Confidence 366799999999999999543 3456777889999999988753 566664 5799999997521 1223
Q ss_pred CeEEeecCCCCEEEEEEee--CCCEEEEecCCCcEEEEeCCCCe------eEEeec--------ccCcEEEEEEccCC--
Q 042260 70 PVMSYDQHTNNVMAVGFQC--DGNWMYSGSEDGTVKIWDLRAPV------CQMEYE--------SRAAVNTVVLHPNQ-- 131 (174)
Q Consensus 70 ~~~~~~~~~~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~------~~~~~~--------~~~~v~~~~~~~~~-- 131 (174)
...++...+..|+.+.|.| .|-.+++++.||.+|||+.-.+. .+.++. ...+..|+.|+|..
T Consensus 104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~ 183 (361)
T KOG2445|consen 104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH 183 (361)
T ss_pred EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence 3445666788999999998 57789999999999999965432 122222 35678899999754
Q ss_pred -CEEEEeeCC-----CcEEEEeCCCCc
Q 042260 132 -TELISGDQN-----GNIRVWDLTANS 152 (174)
Q Consensus 132 -~~l~s~~~d-----~~i~iwd~~~~~ 152 (174)
+.++.|+.+ +.+.||......
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~ 210 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNENG 210 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCCc
Confidence 345555544 379999988655
No 179
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.40 E-value=1.2e-11 Score=90.80 Aligned_cols=146 Identities=14% Similarity=0.204 Sum_probs=119.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc---eeEEeecCCCCeEEEEEcCCC-ceEEEecCCcEEEEEc-CCCCCCCeEEeecCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGR---CYRTIQYPDSQVNRLEITPNK-HYLAAAGNPHIRLFDV-NSSSPQPVMSYDQHT 78 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~ 78 (174)
+...+|.+-....|.||.....+ ..++++.|+..|++++|+|.. .++.++.|+..++|.. ..+.+++.+.+-.++
T Consensus 21 drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN 100 (361)
T KOG1523|consen 21 DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN 100 (361)
T ss_pred CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEec
Confidence 45568888888899999876544 578888899999999999965 5556677889999998 556677777777899
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE---E--eecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ---M--EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~--~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
..++++.|+|..+.|+.|+..+.|-+|-++...-- + ....++.|.++.|+|+.-.|++|+.|+..|++...
T Consensus 101 rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 101 RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 99999999999999999999999999988764321 1 12346779999999999999999999998887654
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.39 E-value=1e-11 Score=93.54 Aligned_cols=124 Identities=29% Similarity=0.495 Sum_probs=96.7
Q ss_pred CCCCeEEEEEcCCCc-eEE-EecCCcEEEEEcCCCCC-------CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEE
Q 042260 34 PDSQVNRLEITPNKH-YLA-AAGNPHIRLFDVNSSSP-------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKI 104 (174)
Q Consensus 34 ~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~i 104 (174)
...++..+.|.++.. .++ +++|..||||-++.... .....+..|...|..+.|+++|..+++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 345788899988654 555 45788999999864432 223346689999999999999999999999999999
Q ss_pred EeCC--------C------C--eeEEe-ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 105 WDLR--------A------P--VCQME-YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 105 wd~~--------~------~--~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
|... + + ...+. ..|...|..++|+|+++++++++-|..+++||+..+.....+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence 9876 2 1 11111 235678999999999999999999999999999998766543
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.38 E-value=2e-11 Score=88.74 Aligned_cols=159 Identities=23% Similarity=0.373 Sum_probs=111.0
Q ss_pred CcEEEEEeeCC-------CcEEEEECCCC---------ceeEEee-cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC
Q 042260 4 PSVILATASYD-------KTIKFWEAKSG---------RCYRTIQ-YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66 (174)
Q Consensus 4 ~~~~l~s~s~D-------~~v~vwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 66 (174)
+..+|+|+-.| -.+.||.+... +++..+. .+.+.|.++.|.|++..+++-.+..|.+|++...
T Consensus 75 d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~es 154 (370)
T KOG1007|consen 75 DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDES 154 (370)
T ss_pred CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccC
Confidence 34566666553 23678876432 2333333 2345789999999988888888999999999765
Q ss_pred CCCCe----EEeecCCCCEEEEEEee--CCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCE-EEEe
Q 042260 67 SPQPV----MSYDQHTNNVMAVGFQC--DGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTE-LISG 137 (174)
Q Consensus 67 ~~~~~----~~~~~~~~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~-l~s~ 137 (174)
..... .....++....+-+|+| +++.+++. .|+++..||+|+..+...++ |...|.++.|+|+... |+++
T Consensus 155 s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~ 233 (370)
T KOG1007|consen 155 SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTC 233 (370)
T ss_pred cchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEc
Confidence 43111 11123566788889998 45565554 67899999999877655553 5678999999998765 6789
Q ss_pred eCCCcEEEEeCCCCcc-eeecCcccce
Q 042260 138 DQNGNIRVWDLTANSC-SCELGLQYGL 163 (174)
Q Consensus 138 ~~d~~i~iwd~~~~~~-~~~~~~~~~~ 163 (174)
+.||.|+|||.+..+. +.+++...+-
T Consensus 234 gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 234 GDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred CCCccEEEEeccCCCccccccCCCceE
Confidence 9999999999997654 4555555554
No 182
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.37 E-value=6.5e-11 Score=91.63 Aligned_cols=144 Identities=16% Similarity=0.246 Sum_probs=116.1
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCC-------------------
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSP------------------- 68 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~------------------- 68 (174)
++||..+|.|.||+..+.+.......|+..|.++..-.+|.+++++.|+.|-.||-+-.+.
T Consensus 260 viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~ 339 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK 339 (626)
T ss_pred EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCC
Confidence 6799999999999998877776666899999999999999999977899999998421100
Q ss_pred -C------------------CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc
Q 042260 69 -Q------------------PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP 129 (174)
Q Consensus 69 -~------------------~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 129 (174)
. ......+|......++..|+...++|++.|+.+++|+ ..+...+.....++.++.|+|
T Consensus 340 ~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp 417 (626)
T KOG2106|consen 340 GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP 417 (626)
T ss_pred CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC
Confidence 0 0011235677888899999999999999999999999 444555556678899999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 130 NQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 130 ~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
.+ .||.|+..|.-.+.|.++...+
T Consensus 418 sg-~va~Gt~~G~w~V~d~e~~~lv 441 (626)
T KOG2106|consen 418 SG-VVAVGTATGRWFVLDTETQDLV 441 (626)
T ss_pred cc-eEEEeeccceEEEEecccceeE
Confidence 99 8999999999999999985433
No 183
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.5e-10 Score=90.82 Aligned_cols=167 Identities=14% Similarity=0.168 Sum_probs=126.3
Q ss_pred CCCCcEEEEEeeCCCcEEEEECCCCceeEEeecC---CCCeEEEEEc------C--------------CCceE-EEecCC
Q 042260 1 MAQPSVILATASYDKTIKFWEAKSGRCYRTIQYP---DSQVNRLEIT------P--------------NKHYL-AAAGNP 56 (174)
Q Consensus 1 ~~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~------~--------------~~~~~-~~~~d~ 56 (174)
|.++..++|....||.+|+||...++....+... .+....+.|. | +...+ .+...+
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4566778999999999999999988876666431 1223333331 1 11122 233567
Q ss_pred cEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEE
Q 042260 57 HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELI 135 (174)
Q Consensus 57 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 135 (174)
.+-+|+...++......-.+|-+.|.++-+..+-..|.|++.|..+..|+.........+. ....+.+++++|++..++
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 8899999888766555556899999999998888899999999999999999877665554 456789999999999999
Q ss_pred EeeCCCcEEEEeCCCCcceeecCcccceeEEEEE
Q 042260 136 SGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFY 169 (174)
Q Consensus 136 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 169 (174)
+++ ++|++||+++++....++.+..+.+.+.|
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 886 57999999999999998766666544444
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.37 E-value=1.5e-11 Score=89.49 Aligned_cols=140 Identities=17% Similarity=0.327 Sum_probs=102.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEee---cCCCCeEEEEEcCCCc-eEEEe--cCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQ---YPDSQVNRLEITPNKH-YLAAA--GNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
-.++||.|.||+||+||++.-+.---+. .+..+...++|+++.. ++++- ....+.|.|++... .++..+.+|.
T Consensus 209 ~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~ 287 (364)
T KOG0290|consen 209 RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQ 287 (364)
T ss_pred cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCc
Confidence 4689999999999999998755432222 2245678899998654 44432 45679999998764 5577788999
Q ss_pred CCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCe------eEEeecccCcEEEEEEccCCCEEEEeeCCCcEEE
Q 042260 79 NNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPV------CQMEYESRAAVNTVVLHPNQTELISGDQNGNIRV 145 (174)
Q Consensus 79 ~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i 145 (174)
..|.+++|.|+ ...|+|++.|..+.+||+.+.- .+..+.....|+.+.|++..+-=++...++++.|
T Consensus 288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeE
Confidence 99999999985 5689999999999999997532 2233456788999999987665444444544443
No 185
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.36 E-value=9.8e-11 Score=90.66 Aligned_cols=137 Identities=15% Similarity=0.270 Sum_probs=105.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+...++|++.|+++++|+ ..+.+-+... ..++.+++|+|.|.+.++...+...+.|.++.. .......+.++..
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~-~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~---lv~~~~d~~~ls~ 452 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DHKLEWTKII-EDPAECADFHPSGVVAVGTATGRWFVLDTETQD---LVTIHTDNEQLSV 452 (626)
T ss_pred ChhheeeccCcceEEEcc--CCceeEEEEe-cCceeEeeccCcceEEEeeccceEEEEecccce---eEEEEecCCceEE
Confidence 345689999999999998 4555544443 356899999999955555567777777876642 2223333789999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCee---EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVC---QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW 146 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 146 (174)
++|+|+|.+||-|+.|+.|.||-+....- .....+.++|..+.|++++++|.+.+-|=.|..|
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 99999999999999999999998754221 1122334899999999999999999999999999
No 186
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.9e-11 Score=89.78 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=88.6
Q ss_pred eEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260 38 VNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY 116 (174)
Q Consensus 38 v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~ 116 (174)
..++.|++-|.+++.+ .||.+-|||+.+... ...+.+|..+|.+++|+++|+.++|+|.|..|++||+..+.+.+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 7789999999888765 789999999988753 3346689999999999999999999999999999999999999989
Q ss_pred cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCC
Q 042260 117 ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLT 149 (174)
Q Consensus 117 ~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~ 149 (174)
...++|..+.|+|-. +.+++.--+..-.+-++.
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s 137 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS 137 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEec
Confidence 999999999999944 433333233333444444
No 187
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=3.2e-12 Score=99.76 Aligned_cols=146 Identities=23% Similarity=0.407 Sum_probs=112.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEee-cCCCCeEEEEEcCC--CceE-EEecCCcEEEEEcCCC--------CCCCe
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQ-YPDSQVNRLEITPN--KHYL-AAAGNPHIRLFDVNSS--------SPQPV 71 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~~-~~~~d~~i~i~d~~~~--------~~~~~ 71 (174)
++.+|++||.|-.+.|||.-..+.++.+. +|...|-++.|-|. +.++ .+++|..|+++|+... .....
T Consensus 61 dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~ 140 (758)
T KOG1310|consen 61 DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETT 140 (758)
T ss_pred CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchh
Confidence 57789999999999999998888888886 57778999999883 3444 4557889999999742 12334
Q ss_pred EEeecCCCCEEEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEE-ee----------cccCcEEEEEEccCCC-EEEEee
Q 042260 72 MSYDQHTNNVMAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQM-EY----------ESRAAVNTVVLHPNQT-ELISGD 138 (174)
Q Consensus 72 ~~~~~~~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~-~~----------~~~~~v~~~~~~~~~~-~l~s~~ 138 (174)
..+.+|...|..++--|++ ..|.++++||+++=+|+|.+..-. .. ..--...++.++|..+ +|+.|+
T Consensus 141 ~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGg 220 (758)
T KOG1310|consen 141 RCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGG 220 (758)
T ss_pred hhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecC
Confidence 4567899999999988776 899999999999999998743211 00 0112457999999765 578899
Q ss_pred CCCcEEEEeCC
Q 042260 139 QNGNIRVWDLT 149 (174)
Q Consensus 139 ~d~~i~iwd~~ 149 (174)
.|-..++||.+
T Consensus 221 sdpfarLYD~R 231 (758)
T KOG1310|consen 221 SDPFARLYDRR 231 (758)
T ss_pred CCchhhhhhhh
Confidence 99999999954
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.35 E-value=8e-13 Score=107.17 Aligned_cols=141 Identities=25% Similarity=0.515 Sum_probs=107.0
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+.+..++||+.|.-+|||..+++.++.+..+|.+.++.++.+..+.+++++ .|.-|++|-++.+. ++..+.+|++.|
T Consensus 200 rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgav 277 (1113)
T KOG0644|consen 200 RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAV 277 (1113)
T ss_pred cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc--hHHHHhccccce
Confidence 456789999999999999999999999999999999999999888877765 46679999999884 455567999999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE-----eecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM-----EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
++++|+|-. +.+.||++++||.+-.-... .+..+.-+.++.|..++..+++|+.|+..+.|.+.
T Consensus 278 taiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~ 346 (1113)
T KOG0644|consen 278 TAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFE 346 (1113)
T ss_pred eeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhh
Confidence 999999843 78999999999988211111 11223445555665566666666666665555544
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.2e-11 Score=96.51 Aligned_cols=123 Identities=24% Similarity=0.532 Sum_probs=97.5
Q ss_pred EeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCC------CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcE
Q 042260 30 TIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNS------SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV 102 (174)
Q Consensus 30 ~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v 102 (174)
+...|...+..+.|++... ++.++.++.+++|.+.. ....++.++.+|.++|.++++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 3344556678888988654 55567899999999932 2356788899999999999999999999999999999
Q ss_pred EEEeCCC---------CeeE--EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 103 KIWDLRA---------PVCQ--MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 103 ~iwd~~~---------~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
+.|++.. +... ....+...+..++++.....|++++.||++|+|+.....
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcC
Confidence 9997641 1111 123566788999999999999999999999999998643
No 190
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=4.2e-11 Score=98.94 Aligned_cols=144 Identities=17% Similarity=0.344 Sum_probs=116.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
.+..+++|+--+.|.+|+....+......+|++.+-.+.++-++.++++ +.|+.+|+|++++.+......+ +|...+.
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f-gHsaRvw 222 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF-GHSARVW 222 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc-cccceeE
Confidence 4567899999999999998743333357789999999999999888765 5788999999988765443333 6899999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.+++.++ .++|++.|-+.++|+.+..... .+ +....+..++..++...+++++.|+.+++||+...
T Consensus 223 ~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 223 ACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999987 9999999999999977654433 23 23567999999999999999999999999999853
No 191
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.9e-10 Score=85.92 Aligned_cols=142 Identities=18% Similarity=0.293 Sum_probs=106.3
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCC----C--------CCeEE
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSS----P--------QPVMS 73 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~----~--------~~~~~ 73 (174)
++++..|-+|++||-.. .+...++. ....|.+++|.|. +..++.+-...|.+|...... . ..+..
T Consensus 113 fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~ 191 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQ 191 (445)
T ss_pred hhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhee
Confidence 67889999999999665 55555543 2456999999995 345555556679999864211 0 11223
Q ss_pred eecCCCCEEEEEEeeCCCEEEEecC-CCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 74 YDQHTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 74 ~~~~~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.++| ..|+++.|+++|..+++++. |..|.|||..++..+... .....+.-+.|+|++..+++++-|+..++|+-...
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~ 270 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS 270 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence 3445 67999999999999999886 567999999887765443 44567889999999999999999999999976654
No 192
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.29 E-value=1.5e-11 Score=94.15 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=110.3
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCC--------------------------------------CCeEEEEEc
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPD--------------------------------------SQVNRLEIT 44 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~--------------------------------------~~v~~~~~~ 44 (174)
.++..|+-|+.-|.|-.+|..+++....+...+ ..|..+.|-
T Consensus 139 rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLeFL 218 (545)
T KOG1272|consen 139 RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARLEFL 218 (545)
T ss_pred CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhhccc
Confidence 456677888888888888887776655543221 123344444
Q ss_pred CCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE-eecccCcE
Q 042260 45 PNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM-EYESRAAV 122 (174)
Q Consensus 45 ~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-~~~~~~~v 122 (174)
|--.+++++ ..+.++--|+.+++. +..+..-.+.+..++-+|-+-.+.+|-..|+|.+|...+..... -+.|.++|
T Consensus 219 PyHfLL~~~~~~G~L~Y~DVS~Gkl--Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V 296 (545)
T KOG1272|consen 219 PYHFLLVAASEAGFLKYQDVSTGKL--VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV 296 (545)
T ss_pred chhheeeecccCCceEEEeechhhh--hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence 444444443 334455556655532 22222334556666667777789999999999999988766543 34688999
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeEE
Q 042260 123 NTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTF 166 (174)
Q Consensus 123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 166 (174)
.++++.++|.++++.+.|..++|||++....+.....+..+...
T Consensus 297 ~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~l 340 (545)
T KOG1272|consen 297 SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNL 340 (545)
T ss_pred ceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccc
Confidence 99999999999999999999999999987766555444444433
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=7.9e-11 Score=97.94 Aligned_cols=147 Identities=15% Similarity=0.288 Sum_probs=111.4
Q ss_pred cEEEEEeeCCCcEEEEECCCCc---eeEEeecCCCC--eEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEeecC
Q 042260 5 SVILATASYDKTIKFWEAKSGR---CYRTIQYPDSQ--VNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~---~~~~~~~~~~~--v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
+.+++.|-.||+||+||.+... .+...+.|... |..+.+.++| .+++++.+|.|++||++............|
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 4689999999999999977543 35666677665 8888888754 567778899999999987433333333333
Q ss_pred C--C-CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-----e--cccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 78 T--N-NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-----Y--ESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 78 ~--~-~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-----~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
. + ..+++..+++...+|+|+. +.|+||++........ | .....+.+++|||....+++|..|.+|.||.
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 3 3 4889999999999999998 9999999875432211 1 1234579999999999999999999999998
Q ss_pred CCCCc
Q 042260 148 LTANS 152 (174)
Q Consensus 148 ~~~~~ 152 (174)
-..++
T Consensus 1380 ~~k~~ 1384 (1387)
T KOG1517|consen 1380 CEKPR 1384 (1387)
T ss_pred cCCcC
Confidence 87654
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.9e-10 Score=86.95 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=113.8
Q ss_pred CcEEEEEeeCCCcEEEEECC------CCceeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEee
Q 042260 4 PSVILATASYDKTIKFWEAK------SGRCYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~------~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~ 75 (174)
++++|++|+.|..+++|.++ +.+.+..... |.+.|-+++|+..+.++.++ .++++...|+++.+...+...+
T Consensus 67 N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~ 146 (609)
T KOG4227|consen 67 NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN 146 (609)
T ss_pred CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc
Confidence 47899999999999999864 3455554443 44779999999888877766 4678888999887554444434
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe----eEEeecccCcEEEEEEccCCCE-EEEeeCCCcEEEEeCCC
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV----CQMEYESRAAVNTVVLHPNQTE-LISGDQNGNIRVWDLTA 150 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~iwd~~~ 150 (174)
..++.|-.+..+|..+.|++.+.++.|.+||.+... .......+....++.|+|..+. |++.++.+.+.+||++.
T Consensus 147 ~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 147 NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence 455689999999999999999999999999998643 1222234566789999997765 56778888899999996
Q ss_pred Cc
Q 042260 151 NS 152 (174)
Q Consensus 151 ~~ 152 (174)
+.
T Consensus 227 ~~ 228 (609)
T KOG4227|consen 227 QA 228 (609)
T ss_pred cc
Confidence 54
No 195
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.26 E-value=9.9e-11 Score=86.34 Aligned_cols=135 Identities=22% Similarity=0.364 Sum_probs=103.5
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCCeEEeecCCC---
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQPVMSYDQHTN--- 79 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~--- 79 (174)
+.+++.|++-.++-||.-.....+..+-+|.+.|+.+.|.++|..+.++ .+..|..||++... .++..+..|..
T Consensus 220 ~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-~pv~~L~rhv~~TN 298 (406)
T KOG2919|consen 220 SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-DPVYALERHVGDTN 298 (406)
T ss_pred CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-chhhhhhhhccCcc
Confidence 4578999999999999888888888888899999999999987766554 47789999998653 44555556644
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCC-e-eEEeecccCcEEEEEEccCCCEEEEeeCC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-V-CQMEYESRAAVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 140 (174)
+-.-....|.+++|++|+.||.|++||++.. . +.....+..-++.++++|--+.+++++..
T Consensus 299 QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 299 QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 3334445688999999999999999999873 2 22333456679999999997777776544
No 196
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.26 E-value=1e-09 Score=77.78 Aligned_cols=119 Identities=20% Similarity=0.344 Sum_probs=80.6
Q ss_pred EEEEEcCCCceEEEe-c----------CCcEEEEEcCCCCCCCeEEee-cCCCCEEEEEEeeCCCEEEE--ecCCCcEEE
Q 042260 39 NRLEITPNKHYLAAA-G----------NPHIRLFDVNSSSPQPVMSYD-QHTNNVMAVGFQCDGNWMYS--GSEDGTVKI 104 (174)
Q Consensus 39 ~~~~~~~~~~~~~~~-~----------d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~t--~~~dg~v~i 104 (174)
..+.|+++|..++.- . -+...+|.++..+.. ..... ...+.|.+++|+|+|+.|+. |..++.+.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 456788877654332 1 123456666443222 22222 23456999999999998654 456779999
Q ss_pred EeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC---CCcEEEEeCCCCcceeecCcc
Q 042260 105 WDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ---NGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 105 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~ 160 (174)
||++ ...+..+. ...++.+.|+|+|++|++++. .|.|.+||+++..+..+.++.
T Consensus 88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~ 144 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS 144 (194)
T ss_pred EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC
Confidence 9997 44455554 467899999999999998764 467999999988777666544
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.26 E-value=2.4e-09 Score=81.73 Aligned_cols=143 Identities=14% Similarity=0.246 Sum_probs=97.1
Q ss_pred EEEEeeCCCcEEEEECCC-Cc--eeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCC-CCCCCeEEeecCCCC
Q 042260 7 ILATASYDKTIKFWEAKS-GR--CYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNS-SSPQPVMSYDQHTNN 80 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~-~~~~~~~~~~~~~~~ 80 (174)
+.++...|++|++||+.+ ++ .+..+.. ......+.++|++.++.++ .++.+.+|++.. +........ .....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~ 81 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGS 81 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCC
Confidence 456668899999999964 33 3444443 3456778999998876543 467789999963 222212111 12345
Q ss_pred EEEEEEeeCCCEEEEecC-CCcEEEEeCCCC----eeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCCC
Q 042260 81 VMAVGFQCDGNWMYSGSE-DGTVKIWDLRAP----VCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTAN 151 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~ 151 (174)
...++++++++++++++. ++.|.+||+... ...........+..++++|+++.++++. .++.|.+||+++.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 678999999998887764 889999998632 1222223334567788999999886554 5689999999863
No 198
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.26 E-value=4.6e-10 Score=94.62 Aligned_cols=167 Identities=16% Similarity=0.255 Sum_probs=109.7
Q ss_pred cEEEEEeeCCCcEEEEECCCC-------ceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCC-----e
Q 042260 5 SVILATASYDKTIKFWEAKSG-------RCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQP-----V 71 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~-----~ 71 (174)
+.+++|||.||+||+||.+.- ....++....+.+..+.+-+.+..++ ++.||.|++.++....... .
T Consensus 1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ 1140 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV 1140 (1431)
T ss_pred CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee
Confidence 368999999999999996531 12333333456787777777666554 5678999999886521111 1
Q ss_pred EEeecC-CCCEEEE-EEee-CCC-EEEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260 72 MSYDQH-TNNVMAV-GFQC-DGN-WMYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIR 144 (174)
Q Consensus 72 ~~~~~~-~~~v~~~-~~~~-~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~ 144 (174)
...+.+ .+.+..+ +|.. .+. .++-+..-+.+..||++........+ .++.|.+++.+|.++-++.|+..|.+-
T Consensus 1141 ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1141 RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE
Confidence 111111 2233333 2332 233 56677778899999999765443332 356799999999999999999999999
Q ss_pred EEeCCCCcceeecCcccce-eEEEEEee
Q 042260 145 VWDLTANSCSCELGLQYGL-RTFLFYHQ 171 (174)
Q Consensus 145 iwd~~~~~~~~~~~~~~~~-~~~~~~~~ 171 (174)
+||++=+...++|.++.+. ++-+-.||
T Consensus 1221 lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1221 LWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred EEEeecCceeecccCcccCCcceEEeec
Confidence 9999976666666554443 44444444
No 199
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.4e-10 Score=87.63 Aligned_cols=122 Identities=22% Similarity=0.400 Sum_probs=99.6
Q ss_pred eecCCCCeEEEEEcCCCceEEEecC-CcEEEEEcCC----CCCCCeEEe-ecCCCCEEEEEEeeCCCEEEEecCCCcEEE
Q 042260 31 IQYPDSQVNRLEITPNKHYLAAAGN-PHIRLFDVNS----SSPQPVMSY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVKI 104 (174)
Q Consensus 31 ~~~~~~~v~~~~~~~~~~~~~~~~d-~~i~i~d~~~----~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~i 104 (174)
+..|-+-|+.+.|+.++.++++++| ..+++|.... ..++++-.. ..|+..|.+++|+...+++++|..+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 3456677899999999998887754 5799998742 112333222 346799999999999999999999999999
Q ss_pred EeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 105 WDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 105 wd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
.|+.+...+..+.+. ..|..+..+|..+.+++.+.+|.|.+||++...
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 999998888777654 489999999999999999999999999999755
No 200
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.24 E-value=5.9e-11 Score=94.65 Aligned_cols=121 Identities=19% Similarity=0.349 Sum_probs=95.6
Q ss_pred EEeecCCCCeEEEEEcCCCceEEEec------CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcE
Q 042260 29 RTIQYPDSQVNRLEITPNKHYLAAAG------NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV 102 (174)
Q Consensus 29 ~~~~~~~~~v~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v 102 (174)
+++.+|...|.+++.+|++.+++++- ...|++|...+- .....+..|.-.|+.++|+|+|++|++.|.|+++
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W--~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW--LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch--hhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence 44456777899999999999988752 234788886544 3344567899999999999999999999999999
Q ss_pred EEEeCCCCee-EE----eecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 103 KIWDLRAPVC-QM----EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 103 ~iwd~~~~~~-~~----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.+|....... .. ...|..=|.++.|+|++..++++|.|++|++|...+.
T Consensus 597 sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999743221 11 1124445789999999999999999999999999987
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.23 E-value=3.3e-10 Score=88.37 Aligned_cols=162 Identities=16% Similarity=0.276 Sum_probs=111.2
Q ss_pred EEEeeCCCcEEEEECCCCceeEEee----cCCCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCC------C-------
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQ----YPDSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSS------P------- 68 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~------~------- 68 (174)
++.|=.-|.|.+.|....+...-+. .....|+++.|-|. +.++++-.++.+.+||.+-.. .
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~ 267 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD 267 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence 4445555666776655422111111 12467899999874 456666678888888753110 0
Q ss_pred -------------CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEE
Q 042260 69 -------------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTEL 134 (174)
Q Consensus 69 -------------~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 134 (174)
.++..+.-....+...+|+++|+++|+.+.||.+||+|..+.+....... -....|++|+||+++|
T Consensus 268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred eeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE
Confidence 11122222345678889999999999999999999999987655433322 2468999999999999
Q ss_pred EEeeCCCcEEEEeCCCCcceeec-CcccceeEEEEE
Q 042260 135 ISGDQNGNIRVWDLTANSCSCEL-GLQYGLRTFLFY 169 (174)
Q Consensus 135 ~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~ 169 (174)
++|++|--|.+|.+...+.+... .+++=|+.-.|=
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 99999999999999999988764 555655555443
No 202
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=4.8e-11 Score=93.34 Aligned_cols=129 Identities=21% Similarity=0.293 Sum_probs=98.0
Q ss_pred eEEeecCCCCeEEEEEcCCCceEEEecCC-cEEEEEcCCCCCCCeEEeecCCCCEEEEEEee--CCCEEEEecCCCcEEE
Q 042260 28 YRTIQYPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC--DGNWMYSGSEDGTVKI 104 (174)
Q Consensus 28 ~~~~~~~~~~v~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~t~~~dg~v~i 104 (174)
...+.+|.+-|+++.|+.+|.++++++|+ .+.|||.-..++. .....+|..+|.++.|.| +.+.++||..|..|++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll-hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL-HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee-eeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34556788899999999999998887655 5899998643222 223468999999999998 5678999999999999
Q ss_pred EeCCCCee----------EEee-cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCC-cceeec
Q 042260 105 WDLRAPVC----------QMEY-ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTAN-SCSCEL 157 (174)
Q Consensus 105 wd~~~~~~----------~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~-~~~~~~ 157 (174)
+|+...+- ...+ -|..+|..++..|++ +.+-++++||+||-+|++.+ .|..+.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence 99975321 1111 244678889999998 56779999999999999964 455443
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=4.7e-10 Score=88.70 Aligned_cols=133 Identities=15% Similarity=0.193 Sum_probs=91.4
Q ss_pred CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-c---CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC
Q 042260 14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-G---NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD 89 (174)
Q Consensus 14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 89 (174)
+..|++||..... .+.+..+...+....|+|++..++.. . +..|++||+.+++...+..+.++ ....+|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 5789999986544 45555666678999999999876543 2 23699999987654333333333 346799999
Q ss_pred CCEEEEec-CCCcEEEE--eCCCCeeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCC
Q 042260 90 GNWMYSGS-EDGTVKIW--DLRAPVCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTA 150 (174)
Q Consensus 90 ~~~l~t~~-~dg~v~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~ 150 (174)
|+.|+.++ .+|.+.|| |+..........+...+....|+|+++.++.++ .++..+||++..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 99888764 67876665 665544333223344577899999999776554 578888988764
No 204
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.21 E-value=1.7e-10 Score=89.28 Aligned_cols=154 Identities=17% Similarity=0.237 Sum_probs=107.5
Q ss_pred cEEEEECCCCceeEEeecC--CCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCC--CCCCeEEeecCCCCEEEEEEeeC
Q 042260 16 TIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSS--SPQPVMSYDQHTNNVMAVGFQCD 89 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~ 89 (174)
++++||...-+....+..+ ...+..+.|+..+.+++++ +|..+++|.-... +....... ....-.|++..+.
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~--~gd~~~Cv~~~s~ 90 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKL--TGDNAFCVACASQ 90 (673)
T ss_pred ceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecc--ccchHHHHhhhhc
Confidence 5899997654444333322 2338888898877665543 6777898865332 22222222 2234555555566
Q ss_pred CCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc-eeEEE
Q 042260 90 GNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG-LRTFL 167 (174)
Q Consensus 90 ~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~ 167 (174)
..++++|+..+.|+|||++...+...+ .|...|.++.++-++.+||+++..|.|.|..+.++...-.+..+++ ..|.+
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL 170 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence 789999999999999999965554433 5678899999999999999999999999999999888766665533 34566
Q ss_pred EEee
Q 042260 168 FYHQ 171 (174)
Q Consensus 168 ~~~~ 171 (174)
=||+
T Consensus 171 ~ys~ 174 (673)
T KOG4378|consen 171 RYSP 174 (673)
T ss_pred eccc
Confidence 6654
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.19 E-value=3.8e-09 Score=80.67 Aligned_cols=145 Identities=11% Similarity=0.218 Sum_probs=95.0
Q ss_pred EEEEEeeCCCcEEEEECCCCceeE-----Eee-cCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCC--CCCCeEEee
Q 042260 6 VILATASYDKTIKFWEAKSGRCYR-----TIQ-YPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSS--SPQPVMSYD 75 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~--~~~~~~~~~ 75 (174)
.++++...+++|.+||+++...+. .+. ........+.|+|++.+++.+ .++.+.+|+++.. .........
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 445677778999999997633221 111 123346789999998877554 3788999999742 222222221
Q ss_pred cC------CCCEEEEEEeeCCCEEEEecC-CCcEEEEeCCCCe----eEEeecccCcEEEEEEccCCCEEEEeeC-CCcE
Q 042260 76 QH------TNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLRAPV----CQMEYESRAAVNTVVLHPNQTELISGDQ-NGNI 143 (174)
Q Consensus 76 ~~------~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i 143 (174)
.. ......+.++|++++++++.. ++.|.+|++.... .............+.++|+++.|+++.. +++|
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcE
Confidence 11 112345789999999888754 7899999985432 2222222334567899999999987765 8899
Q ss_pred EEEeCCC
Q 042260 144 RVWDLTA 150 (174)
Q Consensus 144 ~iwd~~~ 150 (174)
.+|+++.
T Consensus 299 ~v~~~~~ 305 (330)
T PRK11028 299 SVYEIDG 305 (330)
T ss_pred EEEEEcC
Confidence 9998863
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=3.2e-09 Score=83.98 Aligned_cols=163 Identities=14% Similarity=0.151 Sum_probs=102.9
Q ss_pred CcEEEEE-eeCCCcEEEE--ECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-cCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 4 PSVILAT-ASYDKTIKFW--EAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-GNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 4 ~~~~l~s-~s~D~~v~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
++..|+. .+.++.+.|| |+.+++. ..+..+...+....|+|++..++ ++ .++..+||+++........ . .+.
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-l-~~~ 334 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-V-GGR 334 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e-cCC
Confidence 4444544 5578876665 6665553 44444555677899999988654 33 3566788877543222111 1 222
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC--CCcceee
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT--ANSCSCE 156 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~ 156 (174)
. ....|+|+|+.|+..+.++ +.+||+.+......... .......|+|+++.|+.++.++.+.+|++. ++++..+
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 2 3467999999998887765 55699987654322111 223567899999999999999999888874 4666676
Q ss_pred cCcccceeEEEEEeecC
Q 042260 157 LGLQYGLRTFLFYHQDM 173 (174)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ 173 (174)
+..+.......-+||-|
T Consensus 411 l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 411 LPGSDGQVKFPAWSPYL 427 (429)
T ss_pred ccCCCCCCCCcccCCCC
Confidence 65444444444445443
No 207
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=8.1e-09 Score=75.44 Aligned_cols=160 Identities=17% Similarity=0.239 Sum_probs=107.7
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEee---cC---CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQ---YP---DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~---~~---~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
.++-+-.+|.|.+|....-+....++ .. .....++.|++.+.-++.+ .++.+.+-+......+....++.|..
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 34555667777777644322222222 11 1124567888877666555 45667755554443444446788999
Q ss_pred CEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe-eEE--eecccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCC-Ccc
Q 042260 80 NVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV-CQM--EYESRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTA-NSC 153 (174)
Q Consensus 80 ~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~-~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~-~~~ 153 (174)
++.-+.|+. +.+.+++|+.|+.+..||+|.+. .+. ...|...|.+|.-+| ....+++|+.|..|++||.++ ++-
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 999999885 67899999999999999999554 221 123567788888887 456899999999999999996 445
Q ss_pred eeecCcccceeEE
Q 042260 154 SCELGLQYGLRTF 166 (174)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (174)
+.+...+.++=|+
T Consensus 247 l~~~~v~GGVWRi 259 (339)
T KOG0280|consen 247 LFKAKVGGGVWRI 259 (339)
T ss_pred cccCccccceEEE
Confidence 5666666666544
No 208
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=6.2e-09 Score=86.44 Aligned_cols=142 Identities=16% Similarity=0.331 Sum_probs=107.4
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCe----EEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQV----NRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
..++.+..+..+-+||...+..+..+...+... .....+++...++++ .-+.+.+|+....+ .+. ...+|.+.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~p~-~l~GHeG~ 177 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-KPI-RLKGHEGS 177 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-Ccc-eecccCCc
Confidence 356667777789999998887776665443211 122344454555543 46789999987332 223 35689999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE--EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ--MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
+..+.++.+|+++++.|.|.++|+|++.+.+.. ..|.|..+|..++|+|+ .++++++|-+.++|+.+-.
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccc
Confidence 999999999999999999999999999886543 35788899999999998 8999999999999966543
No 209
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=8.9e-10 Score=95.90 Aligned_cols=142 Identities=18% Similarity=0.350 Sum_probs=112.2
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
.+-+||+.||++++|....++.+..++. ..+.|+.+.|+.+|.-+.. -+|+.+.+|... +++...+++|......
T Consensus 2221 ~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~---pk~~~s~qchnk~~~D 2297 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS---PKPYTSWQCHNKALSD 2297 (2439)
T ss_pred ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC---CcceeccccCCccccc
Confidence 3568999999999999999998887764 2367888889887665544 478999999986 4677788999998888
Q ss_pred EEEeeCCCEEEEec---CCCcEEEEeCCCC---eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 84 VGFQCDGNWMYSGS---EDGTVKIWDLRAP---VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 84 ~~~~~~~~~l~t~~---~dg~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
..|-. ..+++++ .++.+.+||...+ .++. --|...++++++.|....+++||.+|.|++||++..+.
T Consensus 2298 f~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2298 FRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred eeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 88865 5556643 4688999996432 2233 34567889999999999999999999999999997543
No 210
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=4.2e-09 Score=79.53 Aligned_cols=151 Identities=15% Similarity=0.267 Sum_probs=97.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCce---eEEeecCCCCeEEEEEcCC-CceEEEe--cC-CcEEEEEcCCCCCCCeEEeec
Q 042260 4 PSVILATASYDKTIKFWEAKSGRC---YRTIQYPDSQVNRLEITPN-KHYLAAA--GN-PHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~~~~~--~d-~~i~i~d~~~~~~~~~~~~~~ 76 (174)
.+.++|.+-.++...+++...... ......-....+.+.+... ...+++- +| ..+.+|....+... ..-+
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~---~~lG 149 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE---PILG 149 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc---hhhh
Confidence 456777777777766777554332 1111111122333433332 2222222 22 23455554433222 2347
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
|.+-++.+++++|+++|+|+..|..||+=.....-.+..| .|..-|..+++-++.. |++||.|+++++||+++++++
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecccCCcc
Confidence 9999999999999999999999999999665544444333 5777899999877654 899999999999999999988
Q ss_pred eecC
Q 042260 155 CELG 158 (174)
Q Consensus 155 ~~~~ 158 (174)
....
T Consensus 229 ~t~d 232 (390)
T KOG3914|consen 229 DTCD 232 (390)
T ss_pred cccc
Confidence 5544
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3.5e-09 Score=80.23 Aligned_cols=149 Identities=18% Similarity=0.254 Sum_probs=107.0
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCC---c-eEEEec--CCcEEEEEcCCCCC---CCe
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNK---H-YLAAAG--NPHIRLFDVNSSSP---QPV 71 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~---~-~~~~~~--d~~i~i~d~~~~~~---~~~ 71 (174)
.++++|++-+.| ..+||++++|..+..... .+.....+.|..++ . ++++.. .+.++.||+..... .+.
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~ 274 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL 274 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch
Confidence 478899999999 899999999977665542 22334566776654 2 333332 34566666533221 111
Q ss_pred EEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 72 MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 72 ~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.+.......+++++.+.+|++++-|+.||.|.|++..+.++..... |...|+.+.|+|+.+.+++.+.|..+.+-.+.
T Consensus 275 ~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 275 RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 1122234579999999999999999999999999998876655443 45689999999999999999999888888887
Q ss_pred CCc
Q 042260 150 ANS 152 (174)
Q Consensus 150 ~~~ 152 (174)
-..
T Consensus 355 vd~ 357 (398)
T KOG0771|consen 355 VDK 357 (398)
T ss_pred ecc
Confidence 633
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=2.4e-09 Score=84.32 Aligned_cols=146 Identities=16% Similarity=0.273 Sum_probs=108.8
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeec------CC-----CCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQY------PD-----SQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQP 70 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~------~~-----~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~ 70 (174)
....+|+.|+.||.|-+||.++...+..+.. +. ..|+++.|+.+|.-++.+ .+|.+.|||+++.++..
T Consensus 185 ~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 185 EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred CccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence 3466889999999999999987665544432 21 238899999887766654 68899999999875443
Q ss_pred eEEeecCCCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 71 VMSYDQHTNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
+. -.....++..+.|.+. ++.++|. ....++|||-.+++.....+....++++++-|++.+++++-.++.+..|-+
T Consensus 265 ~k-dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 265 VK-DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ec-ccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 32 2223456777788664 4456654 456899999999888777777778999999999999999988887777766
Q ss_pred CC
Q 042260 149 TA 150 (174)
Q Consensus 149 ~~ 150 (174)
..
T Consensus 343 P~ 344 (703)
T KOG2321|consen 343 PS 344 (703)
T ss_pred cc
Confidence 53
No 213
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.9e-08 Score=82.34 Aligned_cols=77 Identities=21% Similarity=0.443 Sum_probs=63.0
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC---CeeE-Eeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA---PVCQ-MEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---~~~~-~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.|...+.+.+++|+++++++|..||+|.+|.=-. ..-. ..++ |..+|++++|+++|..|++||..|.+-+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3566688999999999999999999999997322 1111 1122 457899999999999999999999999999999
Q ss_pred Cc
Q 042260 151 NS 152 (174)
Q Consensus 151 ~~ 152 (174)
++
T Consensus 283 ~~ 284 (792)
T KOG1963|consen 283 GK 284 (792)
T ss_pred CC
Confidence 87
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.06 E-value=1.7e-08 Score=75.01 Aligned_cols=140 Identities=19% Similarity=0.278 Sum_probs=102.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
-.+|-....|+.|.+|++...+--.++.+..+.+....|+|+|. ++.++ -+-.|.+|.+.+.+.. -.+..+..+.
T Consensus 61 ~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~---~~~~pK~~~k 137 (447)
T KOG4497|consen 61 CHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY---LLPHPKTNVK 137 (447)
T ss_pred eeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE---EecccccCce
Confidence 44566788899999999999988899988888899999999984 55554 3667899999875321 1223345567
Q ss_pred EEEEeeCCCEEEEecC------------------------------------CCcEEEEeCCCCeeEEeecccCcEEEEE
Q 042260 83 AVGFQCDGNWMYSGSE------------------------------------DGTVKIWDLRAPVCQMEYESRAAVNTVV 126 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~------------------------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~ 126 (174)
..+|+++|++.+..++ +..+.+||---...+..++.+-.+..++
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~ 217 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVE 217 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEE
Confidence 8888888887665542 2345556543333344455567789999
Q ss_pred EccCCCEEEEeeCCCcEEEEe
Q 042260 127 LHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 127 ~~~~~~~l~s~~~d~~i~iwd 147 (174)
++|.+++++.|+.|+.+|+-|
T Consensus 218 wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 218 WSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eccccceEEeeccchhhhhhc
Confidence 999999999999999988743
No 215
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.06 E-value=5e-09 Score=84.29 Aligned_cols=144 Identities=18% Similarity=0.225 Sum_probs=104.1
Q ss_pred EEEEEeeCCCcEEEEE---CCCCc-----eeEEeecCCCCeEEEEEcCCC-ceEEEecCCcEEEEEcCCCCCCCeEEeec
Q 042260 6 VILATASYDKTIKFWE---AKSGR-----CYRTIQYPDSQVNRLEITPNK-HYLAAAGNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd---~~~~~-----~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
..++.|..+|.|.-=+ .+... .......|.+.|..+.++|-. +++.+++|..++||.-... ..++..+..
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~-~~Pl~~~~~ 439 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI-ASPLLSLDS 439 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC-CCcchhhhh
Confidence 3477899999876622 22111 122344577889999999854 4566667999999997632 245555667
Q ss_pred CCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCe--eEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 77 HTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV--CQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 77 ~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
+...+.+++|+| ....|+++..||.+.+||+.... .+.... .....+.+.+++++..|+.|...|++.+|++..
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 777799999998 46689999999999999986532 222221 134557778888899999999999999999964
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.04 E-value=1.1e-09 Score=87.76 Aligned_cols=140 Identities=12% Similarity=0.205 Sum_probs=109.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.-|+.+..| .+.+||...|..+.+++.|..-|.+++|+.+|+.++++ .|..+-+|.-.- ...+.+. |...+-
T Consensus 23 DGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYS-H~D~IQ 97 (1081)
T KOG1538|consen 23 DGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYS-HNDAIQ 97 (1081)
T ss_pred CCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeec-cCCeee
Confidence 44444444433 59999999999999999999999999999999998876 566788998633 3455554 789999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
++.|+|-...++|++-. ..-+|......++ ......+|.+++|..+|.+++.|-.||+|.|=+-..
T Consensus 98 CMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 98 CMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred EeecCchHHHhhhcchh-hccccChhhhhHH-hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 99999988888988765 4677877654332 234457899999999999999999999998876543
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=9.8e-09 Score=80.94 Aligned_cols=149 Identities=18% Similarity=0.300 Sum_probs=110.8
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEe----ecCC----
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSY----DQHT---- 78 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~----~~~~---- 78 (174)
|..++....|.=++++.|.-+..+....+.++.+..++...++++++ ++.+..||.+..+....+.. +.|.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 33444445678888999998888887778899999999888887765 88999999987643222221 1222
Q ss_pred -CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--cCcEEEEEEccC--CCEEEEeeCCCcEEEEeCCCCcc
Q 042260 79 -NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--RAAVNTVVLHPN--QTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 79 -~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
..|+++.|..+|-.++.|..+|.+.|||+|.......-.| ..+|..+.|.+. ++.|++. ....++|||-.+++-
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence 3499999999999999999999999999998776655544 468999999876 4456654 335799999998764
Q ss_pred eeec
Q 042260 154 SCEL 157 (174)
Q Consensus 154 ~~~~ 157 (174)
--.+
T Consensus 307 ~asi 310 (703)
T KOG2321|consen 307 MASI 310 (703)
T ss_pred eeec
Confidence 4333
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.04 E-value=1e-08 Score=75.62 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=99.3
Q ss_pred CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCC-CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC-C
Q 042260 34 PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSS-PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA-P 110 (174)
Q Consensus 34 ~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~ 110 (174)
-..+|++.+|+++...++.+ .+..+.||.....+ +.+..++..|...++++.|.+..+.|++|+.|..-++|.... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 34679999999998888776 45689999988776 778888899999999999999999999999999999999843 2
Q ss_pred ee---EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 111 VC---QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 111 ~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.. ...+..+..+.++.|+|+++.+++|+..+.|.+|-++..
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence 22 122356778999999999999999999999999988754
No 219
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.03 E-value=5.1e-08 Score=76.81 Aligned_cols=145 Identities=11% Similarity=0.190 Sum_probs=115.6
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
.++-.+++=|...|.|-+|++..|+.-..+. .|.+.|..+.++.+ +.+-++++|..+..|+.... ..+..+.+.+
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--~~~~~~~~~~ 144 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--VIIRIWKEQK 144 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc--eeeeeeccCC
Confidence 4556678889999999999999998877775 47788998888775 44445567888899998766 3445567788
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccC-----CCEEEE-eeCCCcEEEEeCCC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPN-----QTELIS-GDQNGNIRVWDLTA 150 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-----~~~l~s-~~~d~~i~iwd~~~ 150 (174)
..+.+++++++++.+++++ +.|++||+++.+.+.+|. |.++|+++.|-.+ |.+|++ ...+..+.+|-++.
T Consensus 145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 8999999999999999887 789999999999999885 5788999999776 555554 44566788898875
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.03 E-value=1.1e-09 Score=87.66 Aligned_cols=109 Identities=21% Similarity=0.428 Sum_probs=88.4
Q ss_pred CeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260 37 QVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY 116 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~ 116 (174)
.|..++|.|+|..++.+.+..+.+||.+.+. ...++.+|...|.+++|+.+|+.+++|+.|..|.+|.-+- +-...+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee
Confidence 5889999999987766667789999998874 3556779999999999999999999999999999998653 334557
Q ss_pred cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 117 ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 117 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.|...|+|+.|+|-...|++++-+ ..-+|...
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~ 122 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPE 122 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChh
Confidence 889999999999988888877543 24455443
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=5.3e-09 Score=78.80 Aligned_cols=126 Identities=11% Similarity=0.200 Sum_probs=102.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCc-eeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGR-CYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
...|||+..-+.+|+||.+.+. ++..+...+.++.++...|.+.++.++ .-+.+..||++.+... ...+.+-.+.+.
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~-g~~~kg~tGsir 294 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL-GCGLKGITGSIR 294 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee-ccccCCccCCcc
Confidence 4568999999999999998654 577777778899999999999988776 4567999999887432 233667788999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCC
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ 131 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (174)
++...|.+.++++++-|+.+||+|+.+........-++.++.+.+.++-
T Consensus 295 sih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 295 SIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred eEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence 9999999999999999999999999986655555556777888886543
No 222
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.00 E-value=3.8e-09 Score=82.71 Aligned_cols=141 Identities=17% Similarity=0.232 Sum_probs=104.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+..++.++.||.+.+-+ +.++...++..|.+.+.+-.|+|+|. ++.++.||.|++|.-. +..... .......|.+
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRSt--l~Q~~~~v~c 150 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRST--VVQNEESIRC 150 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHH--HhhcCceeEE
Confidence 45678888999988886 56777788888888899999999986 5566789999999863 322222 2234577999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
++|.|+.+.++-+.. +.+.|=-+........+ .|..-|.++.|+|..+.+++|++|-.-++||-.-
T Consensus 151 ~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred EEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence 999998776655543 34555445433333333 4566789999999999999999999999999764
No 223
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.00 E-value=2.2e-10 Score=93.38 Aligned_cols=112 Identities=14% Similarity=0.346 Sum_probs=94.7
Q ss_pred ecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC
Q 042260 32 QYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP 110 (174)
Q Consensus 32 ~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~ 110 (174)
.+|-.+|.++.|...+..++++. |..+|||..++. .+.....+|...++.++.+.+..+++++|.|..|++|-+...
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 45666799999999998887764 567899997766 556667899999999999999999999999999999999987
Q ss_pred eeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 111 VCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 111 ~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
..+..+ .+.+.|++++|+|- .+.+.||++++||.+
T Consensus 265 ~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDAR 300 (1113)
T ss_pred chHHHHhccccceeeeccCcc----ccCCCCCceEecccc
Confidence 766444 67789999999993 377889999999998
No 224
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.99 E-value=1.3e-08 Score=81.98 Aligned_cols=144 Identities=19% Similarity=0.270 Sum_probs=95.8
Q ss_pred EEEeeCCCcEEEEECCCCce------eEEee------cCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCC--C---
Q 042260 8 LATASYDKTIKFWEAKSGRC------YRTIQ------YPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSS--P--- 68 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~------~~~~~------~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~--~--- 68 (174)
++++|.||.|..|+++.-.. ..... .....++.+.|.+.. .+++++..|.|.--...... .
T Consensus 308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~ 387 (555)
T KOG1587|consen 308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS 387 (555)
T ss_pred eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc
Confidence 67888899999998754221 11111 122357888898753 46777777766432222111 1
Q ss_pred -CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCC-CCeeEEeecc-cCcEEEEEEccCCCEE-EEeeCCCcEE
Q 042260 69 -QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR-APVCQMEYES-RAAVNTVVLHPNQTEL-ISGDQNGNIR 144 (174)
Q Consensus 69 -~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l-~s~~~d~~i~ 144 (174)
+....+..|.+.+..+.++|=+..+++.+.|-.++||+.. ...+...+.. ...+.+++|+|....| +++..||.|.
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 2244566789999999999855444444449999999987 4444444433 4459999999998765 5666799999
Q ss_pred EEeCCCC
Q 042260 145 VWDLTAN 151 (174)
Q Consensus 145 iwd~~~~ 151 (174)
+||+...
T Consensus 468 iWDLl~~ 474 (555)
T KOG1587|consen 468 IWDLLQD 474 (555)
T ss_pred hhhhhcc
Confidence 9999964
No 225
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2.7e-09 Score=84.37 Aligned_cols=141 Identities=20% Similarity=0.285 Sum_probs=107.9
Q ss_pred cEEEEEeeC---CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASY---DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~---D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
|.+|+|... ...|.|+++........++...+.+..+.|+|...+++.+....++|||+... ..+.++...-..+
T Consensus 533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq--elvKkL~tg~kwi 610 (733)
T KOG0650|consen 533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ--ELVKKLLTGSKWI 610 (733)
T ss_pred CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH--HHHHHHhcCCeee
Confidence 556666554 34588888877666555655567799999999988887777889999999654 2233333344668
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCe-eEE-eecccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPV-CQM-EYESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~-~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
..++.++.|..++.|+.|+.+..+|+.... ... ...|...+.+++||+.-+.+++|+.||++.++-
T Consensus 611 S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 611 SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 899999999999999999999999987542 222 235677899999999999999999999988764
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=2.2e-07 Score=73.62 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=88.3
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-e---cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-A---GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG 90 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 90 (174)
..|.++|...++. +.+..+...+....|+|++..++. + ++..+.+|++.+++...+..+. .......|+|+|
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeEECCCC
Confidence 3688888775543 334445567889999999986653 2 2346899999876543333232 334567899999
Q ss_pred CEEEEe-cCCC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CCcEEEE--eCCCC
Q 042260 91 NWMYSG-SEDG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NGNIRVW--DLTAN 151 (174)
Q Consensus 91 ~~l~t~-~~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~iw--d~~~~ 151 (174)
+.|+.. +.+| .|.+||+.+............+....|+|+++.|+..+. ++...+| |+..+
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence 988754 4444 588899987665443344456788999999998876664 3444555 65544
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=2.4e-07 Score=73.54 Aligned_cols=133 Identities=20% Similarity=0.291 Sum_probs=91.0
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe----cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA----GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG 90 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 90 (174)
..|.++|.. |.....+..+...+....|+|++..++.. ++..|.+||+.++.... +..+...+....|+|+|
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEECCCC
Confidence 378888875 44455565666789999999998866543 24579999998764332 23345567788999999
Q ss_pred CEEE-EecCCCc--EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCC
Q 042260 91 NWMY-SGSEDGT--VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTAN 151 (174)
Q Consensus 91 ~~l~-t~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~ 151 (174)
+.|+ +.+.++. |.+||+.+.................|+|+++.|+..+. +| .|.+||+..+
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 9765 5555555 77778877654432233344567899999998876653 33 5888887654
No 228
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=8.3e-09 Score=81.44 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=104.2
Q ss_pred cEEEEEeeCCCcEEEEECCC-------CceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee--
Q 042260 5 SVILATASYDKTIKFWEAKS-------GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD-- 75 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-- 75 (174)
..-++++|.|++||+|.++. ..|..+++.|..+|.++.|-.+...+++ -|+.+.+||.-.+.+.......
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S-cD~giHlWDPFigr~Laq~~dapk 825 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS-CDGGIHLWDPFIGRLLAQMEDAPK 825 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee-ccCcceeecccccchhHhhhcCcc
Confidence 34578999999999998753 2355566678888999988776655554 4788999996444322211111
Q ss_pred -cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec---c---cCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 76 -QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---S---RAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 76 -~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
+....+.++......-.++-++...+|+++|.|.......+. . ..-+.++++.|.|+.++++-++|.|-+-|-
T Consensus 826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence 112334444332233345555889999999999866554432 1 244789999999999999999999999999
Q ss_pred CCCcceee
Q 042260 149 TANSCSCE 156 (174)
Q Consensus 149 ~~~~~~~~ 156 (174)
+++...-+
T Consensus 906 R~G~vINs 913 (1034)
T KOG4190|consen 906 RNGKVINS 913 (1034)
T ss_pred CCCceecc
Confidence 99875543
No 229
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=1.1e-07 Score=77.96 Aligned_cols=142 Identities=17% Similarity=0.262 Sum_probs=105.9
Q ss_pred EeeCCCcEEEEECCCCcee---EEe-ecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCC--CCCCCeEEeecCCCCEE
Q 042260 10 TASYDKTIKFWEAKSGRCY---RTI-QYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNS--SSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 10 s~s~D~~v~vwd~~~~~~~---~~~-~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~--~~~~~~~~~~~~~~~v~ 82 (174)
..-.+..+.+|+...+... +.. ..|...+++.+++|.+.+++++ .||.|.+|.--. ........+.=|...|.
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 3334556788887664411 111 1244447889999999988877 578899996422 11112223444778999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
+++|+++|.++++|+.++.+-+|.+.++..+......++|..+.++|++...+...+|..|.+-...+.
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 999999999999999999999999999886655567899999999999999999999999888877543
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=2.5e-07 Score=69.62 Aligned_cols=140 Identities=18% Similarity=0.319 Sum_probs=97.4
Q ss_pred EEEEEeeCCCcEEEEECCC----Cc--------eeEEeec-CCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCC
Q 042260 6 VILATASYDKTIKFWEAKS----GR--------CYRTIQY-PDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQP 70 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~----~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~ 70 (174)
.-|+.|...| |.+|.... +. +...++. ...+|+.+.|++++..++++ ++..|.|||..++...+
T Consensus 154 selavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 154 SELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred ceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc
Confidence 3465665554 89997432 11 1112222 13579999999999887765 57789999999887666
Q ss_pred eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 71 VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
+.. ...+.+.-+.|+|++.+|.++.-|+.-++|+...... ....-....|+..+|+|.|++|+-+.. |.=++|.+.
T Consensus 233 L~~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 233 LIP--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred ccc--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 552 3457788999999999999999999999997654332 222334558999999999998764433 234555555
No 231
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.1e-08 Score=76.31 Aligned_cols=152 Identities=18% Similarity=0.328 Sum_probs=108.8
Q ss_pred EEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCC----CCCCeEEeecCCCCEEE
Q 042260 9 ATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSS----SPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 9 ~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~v~~ 83 (174)
++.|.+..+-+-|+++|.. +++. ..+.|.++.|...+.++ .+.-++.|...|++.. ....... -|...+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhh
Confidence 4556677788888887643 2333 34567788888765555 4557889999999865 2222222 47788998
Q ss_pred EEEee-CCCEEEEecCCCcEEEEeCCCCee---EEeeccc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 84 VGFQC-DGNWMYSGSEDGTVKIWDLRAPVC---QMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 84 ~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~---~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
+..-. ++.++.+.+-+|.|++||.|--++ +.+++.+ ..-.-+.+++....+++++.|-..|||.+..+...++
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 88766 678888899999999999987666 5555322 2233445667778899999999999999999999988
Q ss_pred cCccccee
Q 042260 157 LGLQYGLR 164 (174)
Q Consensus 157 ~~~~~~~~ 164 (174)
++-++.+.
T Consensus 384 ipf~~s~~ 391 (425)
T KOG2695|consen 384 IPFPYSAS 391 (425)
T ss_pred cCCCCccc
Confidence 87666553
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=3.2e-07 Score=72.62 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=89.3
Q ss_pred CcEEEEEeeCC---CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-E-ecCCcEEEEEc--CCCCCCCeEEeec
Q 042260 4 PSVILATASYD---KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-A-AGNPHIRLFDV--NSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s~D---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~d~~i~i~d~--~~~~~~~~~~~~~ 76 (174)
+++.|+..+.+ ..|.+||+.+++.... ...........|+|++..++ + ..++...||.+ ..+. ...+..
T Consensus 206 DG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~ 281 (427)
T PRK02889 206 DGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQ 281 (427)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCC
Confidence 45556555432 3599999998876433 22233456789999987654 3 34555566654 4332 222333
Q ss_pred CCCCEEEEEEeeCCCEEEEecC-CCcEEEEeC--CCCeeEEeecccCcEEEEEEccCCCEEEEeeCCC---cEEEEeCCC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTELISGDQNG---NIRVWDLTA 150 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~iwd~~~ 150 (174)
+........|+++|+.|+..+. ++...+|.+ ...................|+|+++.|+..+.++ .|.+||+.+
T Consensus 282 ~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 282 SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 4444566789999998876554 566677765 3333222112222334578999999988766543 599999987
Q ss_pred Ccc
Q 042260 151 NSC 153 (174)
Q Consensus 151 ~~~ 153 (174)
+..
T Consensus 362 g~~ 364 (427)
T PRK02889 362 GQV 364 (427)
T ss_pred CCe
Confidence 653
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=3.1e-09 Score=82.15 Aligned_cols=149 Identities=21% Similarity=0.320 Sum_probs=104.9
Q ss_pred EEEEEeeCCCcEEEEECCCCce------eEEee------cCCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCC---C-
Q 042260 6 VILATASYDKTIKFWEAKSGRC------YRTIQ------YPDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSS---P- 68 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~------~~~~~------~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~---~- 68 (174)
..+++|+.|.-+++||.+.-.. +..+- .....|++++++.+ +.++++-.|..|.++.-.-+. +
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 3688999999999999653211 12221 12345899999954 556666678888888432110 0
Q ss_pred ------CC-eEEeecCCCC--EEEEEE-eeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEEEe
Q 042260 69 ------QP-VMSYDQHTNN--VMAVGF-QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 69 ------~~-~~~~~~~~~~--v~~~~~-~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 137 (174)
.. ...|++|++. |..+-| -|...++++||..|.|.||+-.+.+.+..... +..|+|+.-||.-+.||+.
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 11 1226788764 455554 47889999999999999999988776654432 3479999999999999999
Q ss_pred eCCCcEEEEeCCCCcce
Q 042260 138 DQNGNIRVWDLTANSCS 154 (174)
Q Consensus 138 ~~d~~i~iwd~~~~~~~ 154 (174)
+-|..|+||-....+..
T Consensus 455 Gid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 455 GIDHDVKIWTPLTAERA 471 (559)
T ss_pred CCccceeeecCCccccc
Confidence 99999999998554443
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=3.7e-07 Score=72.45 Aligned_cols=144 Identities=12% Similarity=0.097 Sum_probs=93.2
Q ss_pred CcEEEEEeeC---CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-E-ecCC--cEEEEEcCCCCCCCeEEeec
Q 042260 4 PSVILATASY---DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-A-AGNP--HIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s~---D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~d~--~i~i~d~~~~~~~~~~~~~~ 76 (174)
+++.|+-.+. +..|.+||+.+++... +......+....|+|++..++ + ..++ .|.+||+.++... .+..
T Consensus 212 DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~Lt~ 287 (435)
T PRK05137 212 NRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---RLTD 287 (435)
T ss_pred CCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE---EccC
Confidence 4455555443 4689999998886543 333444567789999987554 3 2333 4777788765432 2334
Q ss_pred CCCCEEEEEEeeCCCEEEEecC-CC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCCC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLTA 150 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~ 150 (174)
+........|+|+|+.|+..+. +| .|.++|+..............+....|+|+++.|+..+.+ ..|.+||+..
T Consensus 288 ~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 288 SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 4455667899999998887664 33 6888888765443322234456678899999998865543 3588888754
Q ss_pred C
Q 042260 151 N 151 (174)
Q Consensus 151 ~ 151 (174)
+
T Consensus 368 ~ 368 (435)
T PRK05137 368 S 368 (435)
T ss_pred C
Confidence 3
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=4.4e-07 Score=71.96 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=92.0
Q ss_pred CcEEEEEeeC---CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-E-ecC--CcEEEEEcCCCCCCCeEEeec
Q 042260 4 PSVILATASY---DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-A-AGN--PHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s~---D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~d--~~i~i~d~~~~~~~~~~~~~~ 76 (174)
++..|+..+. +..|.+||+.+++..... ..........|+|++..++ + ..+ ..|.+||+.+++.. .+..
T Consensus 214 Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~---~lt~ 289 (433)
T PRK04922 214 DGKKLAYVSFERGRSAIYVQDLATGQRELVA-SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT---RLTN 289 (433)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCCEEEec-cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE---ECcc
Confidence 4555665553 346999999887654322 2233345678999987554 3 333 35899999776432 2333
Q ss_pred CCCCEEEEEEeeCCCEEEEecC-CCc--EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCC---cEEEEeCCC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSE-DGT--VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNG---NIRVWDLTA 150 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~-dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~iwd~~~ 150 (174)
+........|+++|+.++..+. +|. +.++|+..................+|+|+++.|+..+.++ .|.+||+.+
T Consensus 290 ~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 290 HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 4444567899999998887664 444 6666766554332212223345689999999987654332 599999977
Q ss_pred Ccc
Q 042260 151 NSC 153 (174)
Q Consensus 151 ~~~ 153 (174)
+..
T Consensus 370 g~~ 372 (433)
T PRK04922 370 GSV 372 (433)
T ss_pred CCe
Confidence 653
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=2.8e-07 Score=73.07 Aligned_cols=148 Identities=12% Similarity=0.103 Sum_probs=91.0
Q ss_pred EEEEEeeCCC--cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec--CC--cEEEEEcCCCCCCCeEEeecCCC
Q 042260 6 VILATASYDK--TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NP--HIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 6 ~~l~s~s~D~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
.++++.+.++ .|++||+.+++.. .+..+........|+|++..++... ++ .+.++|+.+++...+ .. +..
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~--~g~ 336 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TF--QGN 336 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ec--CCC
Confidence 4555666666 5999999887653 3333333345689999988665433 22 366667665543322 22 223
Q ss_pred CEEEEEEeeCCCEEEEecCCC---cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCCCCcc
Q 042260 80 NVMAVGFQCDGNWMYSGSEDG---TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLTANSC 153 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg---~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~ 153 (174)
.....+|+|+|+.|+..+.++ .|.+||+.+.... .+..........|+|+++.|+..+.+ +.|.++|+.. ..
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~ 414 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RV 414 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-Cc
Confidence 344678999999988765432 6999999776543 23333234567899999988765543 3477777743 33
Q ss_pred eeecCc
Q 042260 154 SCELGL 159 (174)
Q Consensus 154 ~~~~~~ 159 (174)
...++.
T Consensus 415 ~~~l~~ 420 (433)
T PRK04922 415 RQRLVS 420 (433)
T ss_pred eEEccc
Confidence 444443
No 237
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.88 E-value=7.5e-08 Score=81.72 Aligned_cols=157 Identities=20% Similarity=0.303 Sum_probs=105.0
Q ss_pred CCCCcEEEEEeeCCCcEEEEECCCC--c-----eeEEeecC-CCCeEEE-EEcC--CCceE-EEecCCcEEEEEcCCCCC
Q 042260 1 MAQPSVILATASYDKTIKFWEAKSG--R-----CYRTIQYP-DSQVNRL-EITP--NKHYL-AAAGNPHIRLFDVNSSSP 68 (174)
Q Consensus 1 ~~~~~~~l~s~s~D~~v~vwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~--~~~~~-~~~~d~~i~i~d~~~~~~ 68 (174)
|.+.++.+|.|+.||.|++.++... + ..+..+.+ ++.+.++ ++.. ....+ ++...+.+..||.+....
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 4566778999999999999998652 1 11111111 2334443 3332 22233 444556789999976432
Q ss_pred CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--cCcEEEEEEccCCC---EEE-Eee-CCC
Q 042260 69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--RAAVNTVVLHPNQT---ELI-SGD-QNG 141 (174)
Q Consensus 69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~---~l~-s~~-~d~ 141 (174)
.-....+...+.|++++.++.+.+++.|...|.+.+||+|-...+..+++ ..++..+..+|..+ ..+ +++ ..+
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 22222333458899999999999999999999999999998776665544 56777777777543 334 444 467
Q ss_pred cEEEEeCCCCcceeec
Q 042260 142 NIRVWDLTANSCSCEL 157 (174)
Q Consensus 142 ~i~iwd~~~~~~~~~~ 157 (174)
.|.+|+++++.|.+-+
T Consensus 1266 evs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVL 1281 (1431)
T ss_pred ceeeeecccCcceEEE
Confidence 8999999999776543
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=5.4e-09 Score=91.24 Aligned_cols=140 Identities=18% Similarity=0.371 Sum_probs=105.4
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe----cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA----GNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.-+..+..||.+-+|... .+..-+.++|+....+..|-. .+++++ .++.+.+||-.-....... ..+|...+
T Consensus 2264 nk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~ga 2339 (2439)
T KOG1064|consen 2264 NKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGA 2339 (2439)
T ss_pred CceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-eeecCCCc
Confidence 345667778999999866 566667777877777777755 333332 3567999996543322222 37999999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
+++++-|....|++|+.+|.|++||++..+..+++.. ++ ....+.+|+..|.|+||++........++
T Consensus 2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999999999999999999998776555543 44 66788999999999999999876665544
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.88 E-value=5.7e-07 Score=70.72 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=93.3
Q ss_pred CcEEEEEeeCC---CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-c--CCcEEEEEcCCCCCCCeEEeec
Q 042260 4 PSVILATASYD---KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-G--NPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s~D---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~--d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
+++.|+.++.+ ..|++||+.+++..... .....+....|+|++..++ +. . +..|.+||+.++.... +..
T Consensus 200 dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~---l~~ 275 (417)
T TIGR02800 200 DGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR---LTN 275 (417)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE---CCC
Confidence 34455554433 47999999988654332 2334456688999987554 32 2 2358888887654322 223
Q ss_pred CCCCEEEEEEeeCCCEEEEecC-CC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCC---cEEEEeCCC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNG---NIRVWDLTA 150 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~iwd~~~ 150 (174)
+........|+++|+.|+..+. ++ .|.++|+..............+....|+|+++.++.++.++ .|.+||+.+
T Consensus 276 ~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 276 GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 3344456689999998876654 33 57778887655433323345567788999999988877665 789999887
Q ss_pred Cc
Q 042260 151 NS 152 (174)
Q Consensus 151 ~~ 152 (174)
+.
T Consensus 356 ~~ 357 (417)
T TIGR02800 356 GG 357 (417)
T ss_pred CC
Confidence 53
No 240
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.86 E-value=8.6e-09 Score=74.36 Aligned_cols=97 Identities=24% Similarity=0.439 Sum_probs=76.7
Q ss_pred EEeeCCCcEEEEECCC--Cce-eE-EeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 9 ATASYDKTIKFWEAKS--GRC-YR-TIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 9 ~s~s~D~~v~vwd~~~--~~~-~~-~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
++|+.+..+..|.++. +.+ ++ ........+..+...|+++++++ ++|+.||+|..++. .++..+..|...|.+
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl--~pLAVLkyHsagvn~ 298 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL--NPLAVLKYHSAGVNA 298 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC--CchhhhhhhhcceeE
Confidence 5677888899998753 332 11 12223345888899999999886 57999999999887 445556679999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDL 107 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~ 107 (174)
++|+|+...+|+++.|++|-+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999986
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.85 E-value=3.8e-08 Score=72.00 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=97.6
Q ss_pred EEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCC-ceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 7 ILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNK-HYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
-++++..+|.+.+-+..... .++.++.|+.+++.+.|+... .++.+ +.|+.+..||++.++.-.....+.|...|.
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~ 214 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV 214 (339)
T ss_pred eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceE
Confidence 36677778888744433332 244677888899999998643 34444 467789999999544222222446788888
Q ss_pred EEEEee-CCCEEEEecCCCcEEEEeCCC-CeeEEeecccCcEEEEEEccCCC--EEEEeeCCCcEEEEeCCCCcce
Q 042260 83 AVGFQC-DGNWMYSGSEDGTVKIWDLRA-PVCQMEYESRAAVNTVVLHPNQT--ELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 83 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
++..++ .+.+|+||+.|-.|++||.|. .++...-.-...|..+..+|... .++++-.+ ..++-+++.+...
T Consensus 215 SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 215 SIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLE 289 (339)
T ss_pred EEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc-CceEEEecccccc
Confidence 888764 678999999999999999984 44444334457789999998544 23333333 3666666655433
No 242
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=7.3e-07 Score=70.67 Aligned_cols=145 Identities=12% Similarity=0.091 Sum_probs=90.2
Q ss_pred CcEEEEEee---CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cC--CcEEEEEcCCCCCCCeEEeec
Q 042260 4 PSVILATAS---YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GN--PHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s---~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d--~~i~i~d~~~~~~~~~~~~~~ 76 (174)
+++.|+-.+ .+..+.+||+.+|+...... .........|+|++..++.. .+ ..|.+||+.++.... +..
T Consensus 209 DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~---lt~ 284 (429)
T PRK03629 209 DGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ---VTD 284 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---ccC
Confidence 444454332 24569999998876433222 22234568899999866532 23 358889987764322 223
Q ss_pred CCCCEEEEEEeeCCCEEEEecCC-CcEEEE--eCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCCC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSED-GTVKIW--DLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLTA 150 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~d-g~v~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~ 150 (174)
+...+....|+|+|+.|+..+.+ +...+| |+...................|+|+++.|+..+.+ ..|.+||+..
T Consensus 285 ~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 285 GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 34567788999999988776654 444555 66554432222223345678899999988765543 3588899987
Q ss_pred Cc
Q 042260 151 NS 152 (174)
Q Consensus 151 ~~ 152 (174)
+.
T Consensus 365 g~ 366 (429)
T PRK03629 365 GG 366 (429)
T ss_pred CC
Confidence 65
No 243
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.82 E-value=7.1e-07 Score=66.05 Aligned_cols=100 Identities=18% Similarity=0.328 Sum_probs=79.0
Q ss_pred EeeCCCcEEEEECCCCce--eEEeecCCCCeEEEEEcCCCceEEEec-CCc-EEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 10 TASYDKTIKFWEAKSGRC--YRTIQYPDSQVNRLEITPNKHYLAAAG-NPH-IRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 10 s~s~D~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~-i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
-|-.-|.|.|-|+...+. ...+..|++.|.+++.+.+|.++++++ .|+ |||||..+++......-......+-+++
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 366678889988765444 356778999999999999999998765 444 8999999885433322223456799999
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCC
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~ 109 (174)
|+|+..+++..|..|+++|+.++.
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999999865
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=3.1e-07 Score=72.73 Aligned_cols=131 Identities=14% Similarity=0.209 Sum_probs=83.8
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG 90 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 90 (174)
..|.++|.. |...+.+..+...+...+|+|++..++... ...|.+||+.+++...+. .........+|+|+|
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCC
Confidence 457777764 444445545556788899999987665432 235899999877533322 233456688999999
Q ss_pred CEEE-EecCCCcEEEEeC--CCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CCcEEEEeCC
Q 042260 91 NWMY-SGSEDGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NGNIRVWDLT 149 (174)
Q Consensus 91 ~~l~-t~~~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~ 149 (174)
+.|+ +.+.++...||.+ ..........+........|+|+++.|+..+. ++...+|.+.
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 9876 5677887777764 33332221122333456789999998876553 4566676654
No 245
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.6e-08 Score=78.27 Aligned_cols=149 Identities=19% Similarity=0.270 Sum_probs=108.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEee-cCCCCeEEEEEcC---CCceEEEecCCcEEEEEcCC-CCCCCeEEeecC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQ-YPDSQVNRLEITP---NKHYLAAAGNPHIRLFDVNS-SSPQPVMSYDQH 77 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~---~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~ 77 (174)
+-+..|+|||.|..|.+||+..++....+. +|...|-...|-| +..++..+.|++++.=.+.. +.......+..|
T Consensus 152 ~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h 231 (559)
T KOG1334|consen 152 QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH 231 (559)
T ss_pred ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccc
Confidence 346789999999999999999888776665 3443444444555 34566667899998777643 333334445678
Q ss_pred CCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEee---cc--c--CcEEEEEEccC-CCEEEEeeCCCcEEEEeC
Q 042260 78 TNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY---ES--R--AAVNTVVLHPN-QTELISGDQNGNIRVWDL 148 (174)
Q Consensus 78 ~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~---~~--~--~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~ 148 (174)
.+.+..++..| ..+-|.|++.|+.+.=.|++.......+ .. + -...+++.+|- ...+++|+.|..+|+||.
T Consensus 232 ~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~ 311 (559)
T KOG1334|consen 232 EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQ 311 (559)
T ss_pred cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcc
Confidence 99999999887 4567999999999999999875433222 11 2 24679999995 457899999999999999
Q ss_pred CCC
Q 042260 149 TAN 151 (174)
Q Consensus 149 ~~~ 151 (174)
+.-
T Consensus 312 R~~ 314 (559)
T KOG1334|consen 312 RRI 314 (559)
T ss_pred cch
Confidence 863
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=7.3e-07 Score=70.25 Aligned_cols=129 Identities=14% Similarity=0.338 Sum_probs=92.6
Q ss_pred cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec---CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCE
Q 042260 16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG---NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNW 92 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 92 (174)
++++.+.++..+...+ ...++|.++.|++++.-++... -..+.|||++.. ++ ++-..+.-..+-|+|.|++
T Consensus 252 ~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v--~df~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PV--FDFPEGPRNTAFFNPHGNI 325 (566)
T ss_pred eEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---Ee--EeCCCCCccceEECCCCCE
Confidence 4777776633333322 2467899999999987665442 246889998653 23 3445567778889999999
Q ss_pred EEEecCC---CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC------CCcEEEEeCCCC
Q 042260 93 MYSGSED---GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ------NGNIRVWDLTAN 151 (174)
Q Consensus 93 l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~ 151 (174)
++.++-+ |.|.+||+...+++..+.... ..-+.|+|+|+++++++. |..++||++.-.
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 8887754 789999999877776665543 355689999999987653 577999998743
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.80 E-value=1.1e-07 Score=71.10 Aligned_cols=145 Identities=17% Similarity=0.333 Sum_probs=98.1
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
..+++.+.|..+..--.+.++.+...... ....++.+.-. .-+++-..+++.+..+......++..+.+|...+.++.
T Consensus 127 e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~ 204 (404)
T KOG1409|consen 127 EWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK 204 (404)
T ss_pred eeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEE
Confidence 34667777766554445555443322211 01111111111 11222234556666565566677888999999999999
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCC--eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
|.+..+.+.+|..|..+.+||+... .....+.+...|..+...+.-+.+++++.||.|.+||++..+
T Consensus 205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred EcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 9999999999999999999998543 333334567788888888888899999999999999999764
No 248
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=2.2e-08 Score=52.00 Aligned_cols=37 Identities=35% Similarity=0.825 Sum_probs=34.5
Q ss_pred CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEe
Q 042260 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD 106 (174)
Q Consensus 70 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd 106 (174)
++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567889999999999999999999999999999997
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.79 E-value=5.8e-06 Score=64.29 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=101.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCCeEEeec----
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQPVMSYDQ---- 76 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~---- 76 (174)
.+++.+.+++.|+.|.++|+.+++.+.+++... ...+++++++|.+++++ ..+.+.++|.++.+. +.....
T Consensus 46 ~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~--v~~I~~~~~~ 122 (369)
T PF02239_consen 46 PDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP--VKTIPTGGMP 122 (369)
T ss_dssp T-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E--EEEEE--EE-
T ss_pred CCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc--eeeccccccc
Confidence 456677778899999999999999999998654 47889999999987765 578899999877643 322221
Q ss_pred ---CCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCe--eEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCC
Q 042260 77 ---HTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPV--CQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLT 149 (174)
Q Consensus 77 ---~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~ 149 (174)
....+.++..++... ++++--+.+.|-+-|..... ....+.......+..|.|++++++.+. .+..|-++|.+
T Consensus 123 ~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 123 VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence 234677777777666 44555555788887876543 223445566778999999999877653 45689999999
Q ss_pred CCcceeec
Q 042260 150 ANSCSCEL 157 (174)
Q Consensus 150 ~~~~~~~~ 157 (174)
++.....+
T Consensus 203 ~~k~v~~i 210 (369)
T PF02239_consen 203 TGKLVALI 210 (369)
T ss_dssp TTEEEEEE
T ss_pred cceEEEEe
Confidence 88766543
No 250
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.79 E-value=1.5e-06 Score=63.25 Aligned_cols=152 Identities=15% Similarity=0.127 Sum_probs=103.6
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeec-CCCCEEEEE
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQ-HTNNVMAVG 85 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~ 85 (174)
+.-++.|.++++.++..+.....+....-.+.++++++++.+.++.+ ...+-.|.+..........+.. ....-.+..
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 55688899999998775543322222222378899999999887655 4678888887654433332322 234456677
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCCeeEEe------ecccCcEEEEEEccCCCE--EEEeeCCCcEEEEeCCCCcceeec
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQME------YESRAAVNTVVLHPNQTE--LISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
|+.....+|.+..||++.|||+|....... -.+.+.+..+.|+|.+.. |+-.-.-+.+.+-|+++....+-+
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 888888999999999999999987543222 235678999999987653 333323457999999987765544
Q ss_pred Cc
Q 042260 158 GL 159 (174)
Q Consensus 158 ~~ 159 (174)
..
T Consensus 291 ~i 292 (344)
T KOG4532|consen 291 VI 292 (344)
T ss_pred ec
Confidence 43
No 251
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.77 E-value=2e-06 Score=74.83 Aligned_cols=149 Identities=13% Similarity=0.154 Sum_probs=101.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecC---------------CCCeEEEEEcCCCc-eEE-EecCCcEEEEEcCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP---------------DSQVNRLEITPNKH-YLA-AAGNPHIRLFDVNSS 66 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~~ 66 (174)
.+.++++.+.++.|++||..++... .+... -....+++++|++. +++ -..++.|++||+.++
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 3566778888889999998776432 11110 01345788999876 333 346778999998765
Q ss_pred CCCCeE-----------Eeec--------CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------
Q 042260 67 SPQPVM-----------SYDQ--------HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-------- 119 (174)
Q Consensus 67 ~~~~~~-----------~~~~--------~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------- 119 (174)
...... .+.. .-....+++++++|+.+++...++.|++||..+..........
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK 852 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence 321111 0000 0112457888999999999999999999999876554322111
Q ss_pred ------CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 120 ------AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 120 ------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
.....++++++++.+++-+.++.|++||++++..
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 2467899999999888888899999999998754
No 252
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.70 E-value=3.7e-06 Score=61.23 Aligned_cols=141 Identities=11% Similarity=0.092 Sum_probs=95.8
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEe-ecCCCCeEEEEEcC-----CCceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTI-QYPDSQVNRLEITP-----NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~-----~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
.+|+.||.-|...+|...+.+....+ ..+ .+++.... .-.++.++.|.++++.++.-.......-.. .-
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~s---nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~--~~ 159 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVS---NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ--NL 159 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeeccc---ccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc--cc
Confidence 36889999999999998876543222 112 22222221 124566677889999998655433332111 13
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCC--eeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
...++++++++++.++.+....|..|.+... ...... .....-.+..|+.+...+|++.+||++.|||++..
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 3788899999999999999999999998643 222212 22233456678888889999999999999999965
No 253
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=1.1e-07 Score=49.29 Aligned_cols=36 Identities=33% Similarity=0.772 Sum_probs=31.4
Q ss_pred eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 112 CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 112 ~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
++.++ .+..+|.+++|+|+++.|++++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34444 4678999999999999999999999999998
No 254
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.69 E-value=8.7e-06 Score=63.29 Aligned_cols=142 Identities=18% Similarity=0.301 Sum_probs=96.0
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
++++-..+++|.+.|..+.+.+..+......-..+.++|++.++ +++.|+.+.++|+.+.+ .+..... .....+++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKV-GGNPRGIA 84 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE--SSEEEEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEec-CCCcceEE
Confidence 44677789999999999999999998654433457789988754 44568899999998874 3444433 35578899
Q ss_pred EeeCCCEEEEec-CCCcEEEEeCCCCeeEEeecc--------cCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCCC
Q 042260 86 FQCDGNWMYSGS-EDGTVKIWDLRAPVCQMEYES--------RAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTAN 151 (174)
Q Consensus 86 ~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~ 151 (174)
++++|++++.+. .++.+.++|.++.+.+..+.. ..++..+..+|....++ +.-..+.|-+-|....
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 999999888665 689999999999877766532 24677888888887554 4444577877787764
No 255
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.6e-07 Score=70.25 Aligned_cols=118 Identities=19% Similarity=0.317 Sum_probs=84.7
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCC-----ceeEEeecCCCCeEEEEEcC-CC-ceEEEecCCcEEEEEcCCCCC-CCeEE
Q 042260 2 AQPSVILATASYDKTIKFWEAKSG-----RCYRTIQYPDSQVNRLEITP-NK-HYLAAAGNPHIRLFDVNSSSP-QPVMS 73 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~d~~i~i~d~~~~~~-~~~~~ 73 (174)
++...++..|.++|.|...|++.+ .+.+.+ .|++.|+++..-+ ++ .+++++-+++|++||++..+. ..+..
T Consensus 261 ~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q 339 (425)
T KOG2695|consen 261 AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ 339 (425)
T ss_pred cccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceee
Confidence 445668999999999999998754 344444 4777888775544 33 455666789999999986532 33677
Q ss_pred eecCCCCEEEE--EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccC
Q 042260 74 YDQHTNNVMAV--GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA 120 (174)
Q Consensus 74 ~~~~~~~v~~~--~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~ 120 (174)
|++|-+.-.-+ ...+....+++++.|-..|||.++......+...+.
T Consensus 340 YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 340 YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 88886543333 345567789999999999999999887776665543
No 256
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.67 E-value=3.7e-07 Score=72.48 Aligned_cols=97 Identities=14% Similarity=0.306 Sum_probs=75.2
Q ss_pred EEEEcCCCCCCCeEE-eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe
Q 042260 59 RLFDVNSSSPQPVMS-YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 59 ~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 137 (174)
.+|++..++.+++.. .-....++.+++++++...++.|+.||.|.+||...+..... ...-.++.++|||+|..+++|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEE
Confidence 566665444433322 123567899999999999999999999999999987755443 444567899999999999999
Q ss_pred eCCCcEEEEeCCCCcceee
Q 042260 138 DQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 138 ~~d~~i~iwd~~~~~~~~~ 156 (174)
+..|.+.+||+--.....+
T Consensus 318 s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 318 SEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred cCCceEEEEEeecCcccee
Confidence 9999999999987665544
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.67 E-value=5.1e-06 Score=65.36 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=86.6
Q ss_pred CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC
Q 042260 14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD 89 (174)
Q Consensus 14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 89 (174)
...|.++|...+ ....+..+...+....|+|++..++... ...+++||+.++.... ...+...+...+|+++
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPD 244 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCC
Confidence 345778887543 3444444555688889999998766432 2468999998764322 2234455667889999
Q ss_pred CCEEE-EecCCC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCc
Q 042260 90 GNWMY-SGSEDG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTANS 152 (174)
Q Consensus 90 ~~~l~-t~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~ 152 (174)
|+.|+ +.+.++ .|.+||+.+.................|+|+++.|+..+. ++ .|.++|+..+.
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 98765 445444 588899887654332233333446689999998876543 33 57778877554
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=6.1e-06 Score=65.36 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=85.6
Q ss_pred cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ec---CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC
Q 042260 16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AG---NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN 91 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~---d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 91 (174)
.|.++|...++ ...+..+...+....|+|++..++. +. ...|.+||+.+++...+. ..........|+|+|+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCCCC
Confidence 47777876544 4444445567888999999886654 32 235888899876543332 2233445688999999
Q ss_pred EEE-EecCCC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCc
Q 042260 92 WMY-SGSEDG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTANS 152 (174)
Q Consensus 92 ~l~-t~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~ 152 (174)
.++ +.+.++ .|.+||+.+.................|+|+++.++..+. ++ .|.++|+..+.
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 876 444555 588889987654432233334556789999998765543 33 57777876654
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.56 E-value=1.8e-06 Score=64.62 Aligned_cols=82 Identities=18% Similarity=0.377 Sum_probs=66.1
Q ss_pred ceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEE
Q 042260 26 RCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKI 104 (174)
Q Consensus 26 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~i 104 (174)
..+..+..|...+.++.|.+.+.++. +..|..+-+||+-... .....+.+|..+|..+.+-+.-+.+.+++.||.|.+
T Consensus 188 ~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 188 QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 45677778888999999999766554 5578889999996443 223446688999999998888899999999999999
Q ss_pred EeCC
Q 042260 105 WDLR 108 (174)
Q Consensus 105 wd~~ 108 (174)
||++
T Consensus 267 w~mn 270 (404)
T KOG1409|consen 267 WNMN 270 (404)
T ss_pred Eecc
Confidence 9975
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=1.1e-05 Score=63.83 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=88.1
Q ss_pred CcEEEEEeeCC---CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-cCC--cEEEEEcCCCCCCCeEEeec
Q 042260 4 PSVILATASYD---KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-GNP--HIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s~D---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~d~--~i~i~d~~~~~~~~~~~~~~ 76 (174)
++..|+..+.+ ..|.+||+.+++.... ...........|+|++..++ +. .++ .|.++|+.++.... +..
T Consensus 209 DG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---lt~ 284 (430)
T PRK00178 209 DGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR---VTN 284 (430)
T ss_pred CCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE---ccc
Confidence 44455444433 3588899988765432 22223345688999987655 32 233 57888987764332 223
Q ss_pred CCCCEEEEEEeeCCCEEEEecC-CC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTA 150 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~ 150 (174)
+........|+++|+.++..+. ++ .|.++|+...................|+|+++.|+..+. ++ .|.+||+.+
T Consensus 285 ~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 285 HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 4444566789999998766553 33 577777766554322112222345689999998876554 33 488899887
Q ss_pred Cc
Q 042260 151 NS 152 (174)
Q Consensus 151 ~~ 152 (174)
+.
T Consensus 365 g~ 366 (430)
T PRK00178 365 GS 366 (430)
T ss_pred CC
Confidence 54
No 261
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.50 E-value=9.5e-07 Score=65.94 Aligned_cols=132 Identities=10% Similarity=0.130 Sum_probs=98.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE--ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA--AGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
.+++.+|+.+.- .+.|-|.++-+..+-+.. -.+|.-+.|..+...+.. ..++.+.+|++...+..+. .++....
T Consensus 18 p~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck--Ideg~ag 93 (447)
T KOG4497|consen 18 PCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK--IDEGQAG 93 (447)
T ss_pred CCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE--eccCCCc
Confidence 367788888755 788888888766555543 235777788877665543 3577899999987765443 3456788
Q ss_pred EEEEEEeeCCCEEEEe-cCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee
Q 042260 81 VMAVGFQCDGNWMYSG-SEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 138 (174)
+.++.|+|+|+.|... .-+-+|.+|.+.+.++......+..+..++|+|++++.+..+
T Consensus 94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred ceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeee
Confidence 9999999999876654 558899999999988776656677789999999999876553
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=2.6e-05 Score=61.89 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=72.0
Q ss_pred eEEEEEcCCCceEEE-e-cCCcEEEE--EcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC---CcEEEEeCCCC
Q 042260 38 VNRLEITPNKHYLAA-A-GNPHIRLF--DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED---GTVKIWDLRAP 110 (174)
Q Consensus 38 v~~~~~~~~~~~~~~-~-~d~~i~i~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~ 110 (174)
.....|+|+|..++. + .++...+| ++..... ....+..+...+....|+|+|+.|+..+.+ ..|.+||+.+.
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECccccc-ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 456789999886553 3 24444555 4432211 122223334556778899999988766543 46999999877
Q ss_pred eeEEeecccCcEEEEEEccCCCEEEEee-C--CCcEEEEeCCCCcc
Q 042260 111 VCQMEYESRAAVNTVVLHPNQTELISGD-Q--NGNIRVWDLTANSC 153 (174)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~--d~~i~iwd~~~~~~ 153 (174)
...........+....|+|+++.|+..+ . ...|.++|+..+..
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 6543323334567789999999876433 2 34688889886643
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=2.1e-05 Score=62.82 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=84.3
Q ss_pred CcEEEEEee-CCC--cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE--ecCC--cEEEEEcCCCCCCCeEEeec
Q 042260 4 PSVILATAS-YDK--TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA--AGNP--HIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s-~D~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~d~--~i~i~d~~~~~~~~~~~~~~ 76 (174)
++..|+-.+ .++ .|.+||+.+++...... .........|+|++..++. ..++ .|.++|+.+++... +..
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~---lt~ 303 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR---ITR 303 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE---Ccc
Confidence 344444433 333 48888988876532222 1223346789999886543 2344 47777887654322 223
Q ss_pred CCCCEEEEEEeeCCCEEEEecC-CC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTA 150 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~ 150 (174)
+........|+++|+.++..+. ++ .+.++|+.+................+|+|+++.|+..+. ++ .|.++|+..
T Consensus 304 ~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 304 HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence 4445667789999998766553 34 466667765543322112222345689999998876544 34 355577776
Q ss_pred Cc
Q 042260 151 NS 152 (174)
Q Consensus 151 ~~ 152 (174)
+.
T Consensus 384 g~ 385 (448)
T PRK04792 384 GA 385 (448)
T ss_pred CC
Confidence 54
No 264
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.48 E-value=4.4e-07 Score=65.63 Aligned_cols=141 Identities=15% Similarity=0.264 Sum_probs=87.1
Q ss_pred EEEeeCCCcEEEEECCCCcee-EEeec-CCCCeEEEEEcCCCceEEEec------CCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 8 LATASYDKTIKFWEAKSGRCY-RTIQY-PDSQVNRLEITPNKHYLAAAG------NPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
++++..||.+-+++.+.--.+ +.+.. +.+ -.+...-..+.++.+.+ -+..+.|+++..+...... ....
T Consensus 104 V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~ 180 (319)
T KOG4714|consen 104 VCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALD 180 (319)
T ss_pred eEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccc
Confidence 778999999999987651100 00100 000 00111112233443332 3456778876543222111 1223
Q ss_pred CEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeE-Ee-ecccCcEEEEEEccC-CCEEEEeeCCCcEEEEeCCCC
Q 042260 80 NVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQ-ME-YESRAAVNTVVLHPN-QTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 80 ~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~-~~-~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.+.+++-.|. ...++.|+.||.+-+||.|...-. .. .-++.++..+.|||. ...|+++++||.+--||-.+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 4888887774 456788899999999999875321 11 246788999999995 567999999999999998853
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=2.5e-05 Score=62.38 Aligned_cols=133 Identities=19% Similarity=0.184 Sum_probs=83.6
Q ss_pred cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cC--CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC
Q 042260 16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GN--PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN 91 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 91 (174)
.+.++|....+ .+.+......+....|+|++..++.. .+ ..|.++|+.+++...+... ........|+|+|+
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECCCCC
Confidence 56777765443 34444455678889999998866543 22 2588889877643332222 22334678999999
Q ss_pred EEEE-ecCCCc--EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCc
Q 042260 92 WMYS-GSEDGT--VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTANS 152 (174)
Q Consensus 92 ~l~t-~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~ 152 (174)
.|+. .+.++. |.++|+.+.................|+|+++.++..+. ++ .|.++|+..++
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 7764 455664 77778877654332233344567889999998765543 34 46667776554
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.46 E-value=2.1e-06 Score=64.38 Aligned_cols=146 Identities=21% Similarity=0.338 Sum_probs=96.3
Q ss_pred cEEEEEeeCCCcEEEEECCCC-ce--eEEeecC-----CCCeEEEEEcCC--CceEEEecCCcEEEEEcCCCCCC-----
Q 042260 5 SVILATASYDKTIKFWEAKSG-RC--YRTIQYP-----DSQVNRLEITPN--KHYLAAAGNPHIRLFDVNSSSPQ----- 69 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~-~~--~~~~~~~-----~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~----- 69 (174)
...++++. |-.|.+|+++-- +. +..++.+ ...|++..|+|. +.++.+++.|.||+.|++...+.
T Consensus 176 ~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 176 KETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 34455554 667999997632 22 3444433 134788899995 34556677899999999843210
Q ss_pred ---------CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC-CeeEEeecc-------------cCcE---E
Q 042260 70 ---------PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA-PVCQMEYES-------------RAAV---N 123 (174)
Q Consensus 70 ---------~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~-------------~~~v---~ 123 (174)
....+......|..+.|+.+|+++.+-+.- +|++||++. .+++.++.. ...| .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence 011122334678899999999999976554 899999953 222222211 1222 4
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 124 TVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
.++|+.++..+++|+.+...++++...++
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEEcCCcceEecccccceEEEecCCCCc
Confidence 67888888999999999999999976654
No 267
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.43 E-value=6.7e-06 Score=61.79 Aligned_cols=146 Identities=16% Similarity=0.321 Sum_probs=97.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc-----eeEEeecCC------------CCeEEEEEcCCC---ceEEEecCCcEEEEEc
Q 042260 4 PSVILATASYDKTIKFWEAKSGR-----CYRTIQYPD------------SQVNRLEITPNK---HYLAAAGNPHIRLFDV 63 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~---~~~~~~~d~~i~i~d~ 63 (174)
.|..|+||..+|.|.+|.-.... ....++.|+ ..|+.+.|.+++ .++.+..|.++++|-+
T Consensus 36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi 115 (433)
T KOG1354|consen 36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKI 115 (433)
T ss_pred ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeee
Confidence 46689999999999999643221 111222222 256777787654 4667778899999987
Q ss_pred CCCCCCC--------------------e-------------EE-eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260 64 NSSSPQP--------------------V-------------MS-YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 64 ~~~~~~~--------------------~-------------~~-~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~ 109 (174)
.....+. + .. -++|...+.++.+++++..+.++ .|=.|.+|.+.-
T Consensus 116 ~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei 194 (433)
T KOG1354|consen 116 RERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEI 194 (433)
T ss_pred eccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccc
Confidence 5322111 0 00 13577889999999998887765 577899999863
Q ss_pred Cee---EEeec-c-----cCcEEEEEEccC-CCEEEEeeCCCcEEEEeCCC
Q 042260 110 PVC---QMEYE-S-----RAAVNTVVLHPN-QTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 110 ~~~---~~~~~-~-----~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~ 150 (174)
... +.-+. + ...|++..|||. .+.++-.++.|+|+|.|++.
T Consensus 195 ~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 195 IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 221 11111 1 245899999995 56667778899999999994
No 268
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=4.9e-06 Score=69.31 Aligned_cols=144 Identities=14% Similarity=0.241 Sum_probs=100.9
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----------CCcEEEEEcCCCCCCCe
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----------NPHIRLFDVNSSSPQPV 71 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~ 71 (174)
-++++++..|...|+|.+-|.++.+.++++..|.+.+.+++. .|.++++++ |.-+++||++.-+....
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P 261 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP 261 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence 356788999999999999999999999999999998988766 444554433 66789999986533222
Q ss_pred EEeecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEe---CCCCe-eEEeecc-cCcEEEEEEccCCCEEEEeeCCCcEEE
Q 042260 72 MSYDQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWD---LRAPV-CQMEYES-RAAVNTVVLHPNQTELISGDQNGNIRV 145 (174)
Q Consensus 72 ~~~~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd---~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~i 145 (174)
.. .+.++ .-+.|.|. ...++-++..|...+-| +..+. -+..+.. .+.+....+++++..++.|..+|.|.+
T Consensus 262 I~--~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 262 IQ--FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred cc--cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 22 12121 22334442 33456667778888888 44442 2222333 345999999999999999999999999
Q ss_pred EeCCC
Q 042260 146 WDLTA 150 (174)
Q Consensus 146 wd~~~ 150 (174)
|--+.
T Consensus 339 wa~~~ 343 (1118)
T KOG1275|consen 339 WADRP 343 (1118)
T ss_pred ecCCC
Confidence 98443
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.38 E-value=0.00017 Score=56.59 Aligned_cols=160 Identities=12% Similarity=0.184 Sum_probs=108.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC-ceEEEecCC-cEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK-HYLAAAGNP-HIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
++.+++..|+ |...+.+...+-.++. .+...|.-..+.-++ ..+.+..|+ .+-++|.++++.+ ......+.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---r~e~~lg~I 404 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---RIEKDLGNI 404 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---EeeCCccce
Confidence 4667777775 4567776665544432 233446544444332 344444455 7899999887533 344567899
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCC----cEEEEeCCCCcce--
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNG----NIRVWDLTANSCS-- 154 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~-- 154 (174)
.+++.+++|++++.+-....+-+.|+.+......- ....-|....|||+++.+|-+=-+| .|+++|+..++..
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 99999999999999999999999999887755432 3345699999999999998764444 5999999985432
Q ss_pred -----eecCcccce-eEEEEE
Q 042260 155 -----CELGLQYGL-RTFLFY 169 (174)
Q Consensus 155 -----~~~~~~~~~-~~~~~~ 169 (174)
+++....++ .++++|
T Consensus 485 TT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 485 TTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred cCCcccccCcccCCCCcEEEE
Confidence 445455555 455554
No 270
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.5e-05 Score=61.87 Aligned_cols=154 Identities=12% Similarity=0.187 Sum_probs=109.2
Q ss_pred CCcEEEEEeeC-CCcEEEEECCCCceeEEeecC--CCCeEEEEEcCCCc--eEEEe--cCCcEEEEEcCCCCCCCeEEee
Q 042260 3 QPSVILATASY-DKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKH--YLAAA--GNPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 3 ~~~~~l~s~s~-D~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~--~~~~~--~d~~i~i~d~~~~~~~~~~~~~ 75 (174)
.++-++.|.+. |..+|++|+++-.-+..++.. +..+. ...++... .++.+ .++.+.++|-.....+....-.
T Consensus 63 ~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 63 YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred ccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 45677888777 999999999876554333322 22222 22233211 33333 4678999998766544444455
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC----CeeEEee------------cccCcEEEEEEccCCCEEEEeeC
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA----PVCQMEY------------ESRAAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~------------~~~~~v~~~~~~~~~~~l~s~~~ 139 (174)
-|..+|..+.+++-+..+++....|.|..|.... ++....+ ..+....++.|+|++..+.+-+.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 6899999999999999999999999999999873 2211111 22456789999999999999889
Q ss_pred CCcEEEEeCCCCcceeec
Q 042260 140 NGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 140 d~~i~iwd~~~~~~~~~~ 157 (174)
|..||+++.+++...+.+
T Consensus 222 DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 222 DRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccEEEEEEeccchhhhhh
Confidence 999999999998766543
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=8.9e-07 Score=70.26 Aligned_cols=128 Identities=17% Similarity=0.361 Sum_probs=89.4
Q ss_pred EEeecCCCCeEEE-EEcCCCceEEEecCCcEEEEEcCCCC-----CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcE
Q 042260 29 RTIQYPDSQVNRL-EITPNKHYLAAAGNPHIRLFDVNSSS-----PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV 102 (174)
Q Consensus 29 ~~~~~~~~~v~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v 102 (174)
..+.+|...|..+ +.+..+.++.++.|.++++|.++... ..+..+|..|+..+.++.|-.+.+.++++ ||-+
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 4445565566554 44556778888999999999997543 23677889999999999999988888854 6889
Q ss_pred EEEeCCCCeeEE--ee-cccCcEEEEEEcc--CCCEEEEe-eCCCcEEEEeCCCCcceeecC
Q 042260 103 KIWDLRAPVCQM--EY-ESRAAVNTVVLHP--NQTELISG-DQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 103 ~iwd~~~~~~~~--~~-~~~~~v~~~~~~~--~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~ 158 (174)
++||.--..... .. ..++.+..+...| +...+++| +...+|+++|-+....++++.
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 999965433221 11 1123334444444 34556666 678899999999998888764
No 272
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.31 E-value=5.4e-05 Score=54.83 Aligned_cols=143 Identities=12% Similarity=0.160 Sum_probs=89.8
Q ss_pred CCCcEEEEECCCCceeEEeecCC--CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260 13 YDKTIKFWEAKSGRCYRTIQYPD--SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG 90 (174)
Q Consensus 13 ~D~~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 90 (174)
.+++|..||.++|+.+-...... ...........+.++++..++.+..||..+++..-........... - ...+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~-~~~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---P-VVDG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---E-EEET
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---e-eecc
Confidence 37899999999999988776522 1122113334566666668889999999887432222221111111 1 2234
Q ss_pred CEEEEecCCCcEEEEeCCCCeeEEee-ccc----CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 91 NWMYSGSEDGTVKIWDLRAPVCQMEY-ESR----AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 91 ~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~----~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
..++.++.++.+..+|.++.+..... ... ...........+..++.+..++.|..+|+++++...+.+.
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 55566667889999999988877663 221 1112222333477788888899999999999998877644
No 273
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.29 E-value=0.0003 Score=51.54 Aligned_cols=143 Identities=19% Similarity=0.214 Sum_probs=97.8
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEc-CCCceEEEecCCcEEEEEcCCCCCCCeEEee--c-CCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEIT-PNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD--Q-HTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~-~~~ 79 (174)
.+.++.+--..+.|.-|+..+++.. .+..+. ..++.+. +++.++++.. +.+.++|..+++...+.... . ...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~ 86 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFN 86 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccCCCcccC
Confidence 5778888888899999998876543 233332 6677777 6766666654 55677798887655554442 1 345
Q ss_pred CEEEEEEeeCCCEEEEecCC--------CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260 80 NVMAVGFQCDGNWMYSGSED--------GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA 150 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~d--------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~ 150 (174)
....+++.++|++.++.... |.+..++.. .........-...+.++|+|+++.|. +-+..+.|..+++..
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccc
Confidence 67789999999988876544 557777777 44444444455679999999998775 556678899999874
Q ss_pred C
Q 042260 151 N 151 (174)
Q Consensus 151 ~ 151 (174)
.
T Consensus 166 ~ 166 (246)
T PF08450_consen 166 D 166 (246)
T ss_dssp T
T ss_pred c
Confidence 3
No 274
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=6.7e-05 Score=61.92 Aligned_cols=139 Identities=12% Similarity=0.204 Sum_probs=94.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-----CceEEEecCCcEEEEEcCC-CCCCCeEEeecC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-----KHYLAAAGNPHIRLFDVNS-SSPQPVMSYDQH 77 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~ 77 (174)
.|..++|||.||+|.|-.+.+.+....+..+ .++.+++++|+ .+.+++++...+-++.-+= +....+ .+...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v-~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV-VLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce-eeecC
Confidence 4678999999999999999988887777654 46889999986 3345555444465554321 111222 23445
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc-------CcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-------AAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.+.|.++.|. |++||=++.+| |+++|+...+.......+ .-...+.|.++.+.|+ |...+|+|..++
T Consensus 160 eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred ccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 6889999984 78888887775 999999876655443221 1134677777665554 455689999998
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.24 E-value=4.3e-06 Score=62.18 Aligned_cols=122 Identities=17% Similarity=0.314 Sum_probs=79.5
Q ss_pred CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCC-CeEEeecC-----CCCEEEEEEeeCCC-EEEEecCCCcEEEEeCC
Q 042260 36 SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-PVMSYDQH-----TNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLR 108 (174)
Q Consensus 36 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~-----~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~ 108 (174)
.-++++.++.+...+.++.+-.|.+|.+....-. .+.....| ..-+++..|+|... .+.-.++.|.|++-|+|
T Consensus 173 yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 173 YHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 3467888888888888888888999988543211 11112223 24467777887543 34445677899999998
Q ss_pred CCee----EEeec-------------ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC-CcceeecC
Q 042260 109 APVC----QMEYE-------------SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA-NSCSCELG 158 (174)
Q Consensus 109 ~~~~----~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~ 158 (174)
+... ...+. .-+.|.++.|+|+++++++-..- +|+|||++. +.+...++
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeec
Confidence 5321 01110 12568999999999999877654 799999994 44554443
No 276
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.23 E-value=0.0011 Score=51.07 Aligned_cols=160 Identities=16% Similarity=0.272 Sum_probs=100.1
Q ss_pred EEEeeCC----CcEEEEEC--CCCcee--EEeecCCCCeEEEEEcCCCceEEEe-c----CCcEEEEEcCCC--CCCCeE
Q 042260 8 LATASYD----KTIKFWEA--KSGRCY--RTIQYPDSQVNRLEITPNKHYLAAA-G----NPHIRLFDVNSS--SPQPVM 72 (174)
Q Consensus 8 l~s~s~D----~~v~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~-~----d~~i~i~d~~~~--~~~~~~ 72 (174)
+..|++. +.|..|++ ++++.. ..+. .......++++|++.++.+. . ++.|..|.+... ++..+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556666 68999987 445432 2222 23345668889988877664 2 457888887653 333333
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEec-CCCcEEEEeCCCC-eeEE---eec-----------ccCcEEEEEEccCCCEEEE
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGS-EDGTVKIWDLRAP-VCQM---EYE-----------SRAAVNTVVLHPNQTELIS 136 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~~-~~~~---~~~-----------~~~~v~~~~~~~~~~~l~s 136 (174)
.........+.+++++++++++.+. .+|.+.++++... .... .+. ....+.++.++|++++|++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 3332345677889999999887775 5899999999762 2211 111 1245789999999998877
Q ss_pred eeC-CCcEEEEeCCCCc--ce----eecCcccceeEEEE
Q 042260 137 GDQ-NGNIRVWDLTANS--CS----CELGLQYGLRTFLF 168 (174)
Q Consensus 137 ~~~-d~~i~iwd~~~~~--~~----~~~~~~~~~~~~~~ 168 (174)
... ...|.+|++.... .. .+.+...+++.++|
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 532 3369999998765 21 24556666666554
No 277
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.20 E-value=0.0011 Score=51.27 Aligned_cols=143 Identities=14% Similarity=0.290 Sum_probs=88.8
Q ss_pred EEEEeeCCCcEEEEECCCCc--e--eEEeec-CCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCC--CCCCCeEEeec-
Q 042260 7 ILATASYDKTIKFWEAKSGR--C--YRTIQY-PDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNS--SSPQPVMSYDQ- 76 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~--~--~~~~~~-~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~--~~~~~~~~~~~- 76 (174)
++++--....|.+|++.... . ...+.. ....-..+.|+|+++++... .++.|.++++.. +..........
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 44444445579999887654 3 223332 34557899999998876544 467799998873 22111111111
Q ss_pred -----CCCCEEEEEEeeCCCEEEEec-CCCcEEEEeCCC--C--eeEEeecc-cCcEEEEEEccCCCEEEEeeC-CCcEE
Q 042260 77 -----HTNNVMAVGFQCDGNWMYSGS-EDGTVKIWDLRA--P--VCQMEYES-RAAVNTVVLHPNQTELISGDQ-NGNIR 144 (174)
Q Consensus 77 -----~~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~--~--~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-d~~i~ 144 (174)
.......++++++|++++.+. .+..|.++++.. . ..+..+.. ......++++|+++.|+++.+ ++.|.
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 112688899999999876654 567899999942 2 22223332 445799999999999988775 56899
Q ss_pred EEeCC
Q 042260 145 VWDLT 149 (174)
Q Consensus 145 iwd~~ 149 (174)
+|++.
T Consensus 318 vf~~d 322 (345)
T PF10282_consen 318 VFDID 322 (345)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98875
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.20 E-value=9.8e-06 Score=58.79 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=65.3
Q ss_pred EEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEE
Q 042260 17 IKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWM 93 (174)
Q Consensus 17 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 93 (174)
.+.|+++.-+.+..-......|..++-+|. ..+++ +++++.+-+||.+... .+...+..|...+..+.|.| ++..+
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchhe
Confidence 455555543333222223344888888884 34444 4567789999998763 34445678999999999997 78899
Q ss_pred EEecCCCcEEEEeCCC
Q 042260 94 YSGSEDGTVKIWDLRA 109 (174)
Q Consensus 94 ~t~~~dg~v~iwd~~~ 109 (174)
+++++||.+-.||-.+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999874
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=0.00061 Score=51.57 Aligned_cols=138 Identities=18% Similarity=0.317 Sum_probs=93.8
Q ss_pred CCcEEEEECCC--Cce--eEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCC-CCCCCeEEeecCCCC------
Q 042260 14 DKTIKFWEAKS--GRC--YRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNS-SSPQPVMSYDQHTNN------ 80 (174)
Q Consensus 14 D~~v~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~-~~~~~~~~~~~~~~~------ 80 (174)
+|.|--|.+.. |+. +-.......+-+.+++++++.++.++ ..+.+.++.++. +.+........|.+.
T Consensus 63 ~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ 142 (346)
T COG2706 63 EGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ 142 (346)
T ss_pred cCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence 46677776553 433 22222233344778899999877665 467899999865 434433333344444
Q ss_pred ----EEEEEEeeCCCEEEEecC-CCcEEEEeCCCCeeE----EeecccCcEEEEEEccCCCEEEEeeC-CCcEEEEeCCC
Q 042260 81 ----VMAVGFQCDGNWMYSGSE-DGTVKIWDLRAPVCQ----MEYESRAAVNTVVLHPNQTELISGDQ-NGNIRVWDLTA 150 (174)
Q Consensus 81 ----v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~~ 150 (174)
+....+.|+++++++.+- ...|.+|++...... ..+..+....-|+|||++++.....+ +++|.+|+++.
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred cCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 888889999999888753 247999998754432 22344567899999999999877665 89999999998
Q ss_pred C
Q 042260 151 N 151 (174)
Q Consensus 151 ~ 151 (174)
.
T Consensus 223 ~ 223 (346)
T COG2706 223 A 223 (346)
T ss_pred C
Confidence 4
No 280
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.0005 Score=54.67 Aligned_cols=143 Identities=13% Similarity=0.113 Sum_probs=80.5
Q ss_pred EeeCCC--cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec--CC--cE--EEEEcCCCCC-CCeEEeecCCCC
Q 042260 10 TASYDK--TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NP--HI--RLFDVNSSSP-QPVMSYDQHTNN 80 (174)
Q Consensus 10 s~s~D~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~--~i--~i~d~~~~~~-~~~~~~~~~~~~ 80 (174)
++..++ .|.+.++.+|+...... .........|+|+|..++... ++ .+ ..|++..+.. ............
T Consensus 204 ~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~ 282 (428)
T PRK01029 204 VSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGT 282 (428)
T ss_pred EEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCC
Confidence 444444 46666887776433332 223344578999997665432 12 33 4466654311 111111222233
Q ss_pred EEEEEEeeCCCEEEEec-CCCcEEEEe--CCC-CeeEEee-cccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCCCCc
Q 042260 81 VMAVGFQCDGNWMYSGS-EDGTVKIWD--LRA-PVCQMEY-ESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLTANS 152 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~-~dg~v~iwd--~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~ 152 (174)
.....|+|+|+.|+..+ .+|...+|. +.. ......+ .....+....|+|+++.|+..+.+ ..|.+||+..+.
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 45678999999877655 466666664 321 1111212 223456788999999988765432 369999998775
Q ss_pred c
Q 042260 153 C 153 (174)
Q Consensus 153 ~ 153 (174)
.
T Consensus 363 ~ 363 (428)
T PRK01029 363 D 363 (428)
T ss_pred e
Confidence 4
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.18 E-value=0.0003 Score=54.77 Aligned_cols=144 Identities=12% Similarity=0.145 Sum_probs=90.2
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 86 (174)
.+..++.++.|..+|..+|+.+-............... ++.+++++.++.+..+|..+++.. -.... ...+.+.-.
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~--W~~~~-~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKEL--WRAKL-SSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEe--eeecc-CceeecCCE
Confidence 46778889999999999999876665443212222222 455666667888999998777432 11111 111211111
Q ss_pred eeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEE------EEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN------TVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
. .+..++.++.++.+..||.++.+.+..+....+.. +... .+..++.+..++.+.-+|.++++..++.
T Consensus 143 v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 143 V-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred E-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 1 24566677889999999999888766554432211 1111 1246777888899999999998877654
No 282
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.16 E-value=4.9e-05 Score=63.63 Aligned_cols=141 Identities=21% Similarity=0.272 Sum_probs=103.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+..++-|+....+..+|+++++..+......+.|.-+.. ++.++.++ ..|.|.+-|.++. ..+.++.+|.+.+.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC--ceeeeeeccccceee
Confidence 345677888888999999999888777766656766665 44555544 5788999898765 567788999998887
Q ss_pred EEEeeCCCEEEEecC---------CCcEEEEeCCCCeeEEeecccCcEEEEEEccC-CCEEEEeeCCCcEEEEe---CCC
Q 042260 84 VGFQCDGNWMYSGSE---------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPN-QTELISGDQNGNIRVWD---LTA 150 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd---~~~ 150 (174)
... +|+.++|++. |..|++||+|.-+....+..+....-+.|+|. ...++..++.|+..+-| +.+
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 665 6889999874 67799999997665544444444466678885 45677788888888888 555
Q ss_pred C
Q 042260 151 N 151 (174)
Q Consensus 151 ~ 151 (174)
+
T Consensus 301 P 301 (1118)
T KOG1275|consen 301 P 301 (1118)
T ss_pred C
Confidence 4
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.16 E-value=1.3e-05 Score=61.02 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=68.3
Q ss_pred eeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC
Q 042260 11 ASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD 89 (174)
Q Consensus 11 ~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 89 (174)
++....+.+|....+.+. .+-+|.+-+..++++|++.++.++ -|..||+--....-..... .-+|+.-|..++..+
T Consensus 128 agD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~~- 204 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLTD- 204 (390)
T ss_pred cCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeecc-
Confidence 344444445544433222 223566678899999999888777 4777887655433211111 236889999998765
Q ss_pred CCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260 90 GNWMYSGSEDGTVKIWDLRAPVCQMEY 116 (174)
Q Consensus 90 ~~~l~t~~~dg~v~iwd~~~~~~~~~~ 116 (174)
+..|.++|.|+++++||++++++..++
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CceeeecCCCCcEEEEecccCCccccc
Confidence 455899999999999999987765444
No 284
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.1e-05 Score=60.24 Aligned_cols=92 Identities=22% Similarity=0.360 Sum_probs=65.5
Q ss_pred EEEEECCCCceeEEeecCCCCeEEEEEcCCCc--eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC-CCEE
Q 042260 17 IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH--YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD-GNWM 93 (174)
Q Consensus 17 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 93 (174)
+++.+.-+-+...-+..+...|.+++|+|.+. +..++-+..|+|.|+++.. ....+..+ ..+++++|..+ ..+|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCccee
Confidence 33443333333333334556789999999654 4556678899999998863 34445566 78999999865 5579
Q ss_pred EEecCCCcEEEEeCCCCe
Q 042260 94 YSGSEDGTVKIWDLRAPV 111 (174)
Q Consensus 94 ~t~~~dg~v~iwd~~~~~ 111 (174)
++|...|.|.++|+|.+.
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 999999999999999765
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.13 E-value=0.0015 Score=48.11 Aligned_cols=153 Identities=13% Similarity=0.202 Sum_probs=95.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecC-------CCCeEEEEEcCC-------CceEEEecCCcEEEEEcCCC---
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP-------DSQVNRLEITPN-------KHYLAAAGNPHIRLFDVNSS--- 66 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~-------~~~~~~~~d~~i~i~d~~~~--- 66 (174)
++.+||-+...|+|++||+... .+..+... ..+|.++.|-+. ..+++....+.++-|-+..+
T Consensus 54 D~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q 132 (282)
T PF15492_consen 54 DCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ 132 (282)
T ss_pred CCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC
Confidence 5678999999999999998753 33333321 234666666532 24666666777777765332
Q ss_pred CCCCeEEe---ecCCCCEEEEEEeeCCCEEEEec-CCC----------cEEEEeCCCCe--e------------------
Q 042260 67 SPQPVMSY---DQHTNNVMAVGFQCDGNWMYSGS-EDG----------TVKIWDLRAPV--C------------------ 112 (174)
Q Consensus 67 ~~~~~~~~---~~~~~~v~~~~~~~~~~~l~t~~-~dg----------~v~iwd~~~~~--~------------------ 112 (174)
+......+ ......|.++.|.+..++|+-|+ ... -+.-|.+-... .
T Consensus 133 ~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~ 212 (282)
T PF15492_consen 133 GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRG 212 (282)
T ss_pred cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccc
Confidence 22222221 22467899999999877655543 322 24445531100 0
Q ss_pred ---EE---ee----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 113 ---QM---EY----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 113 ---~~---~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.. .+ .....|..+..+|+++.|++...+|.|.+|++-+-+...++
T Consensus 213 ~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 213 LLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred eeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 00 01 12356889999999999999999999999999876555443
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.11 E-value=0.00027 Score=54.99 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=90.8
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCC----CC------eE-EEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPD----SQ------VN-RLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~----~~------v~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 75 (174)
.++.+..++.+..+|.++|+.+....... .. +. ...+ .++.+++++.++.+..+|..+++. .-..+
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~--~W~~~ 268 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRV--LWKRD 268 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcE--EEeec
Confidence 45677888999999999998764432110 00 00 0111 134555666788899999987642 22111
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccC-cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRA-AVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
........ ..+..++.++.||.+..+|..+.+...... ... ...+... .+..|++++.+|.|.++|.++++.
T Consensus 269 --~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 269 --ASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred --cCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 11111111 246678888899999999998877654442 111 1222222 456888899999999999999998
Q ss_pred eeecCccc
Q 042260 154 SCELGLQY 161 (174)
Q Consensus 154 ~~~~~~~~ 161 (174)
..++....
T Consensus 343 ~~~~~~~~ 350 (377)
T TIGR03300 343 VARLKTDG 350 (377)
T ss_pred EEEEEcCC
Confidence 87765433
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.10 E-value=0.00081 Score=59.10 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=90.2
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecC-----------------CCCeEEEEEcC-CCceEEE-ecCCcEEEEEcCCCC
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYP-----------------DSQVNRLEITP-NKHYLAA-AGNPHIRLFDVNSSS 67 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~~~~-~~d~~i~i~d~~~~~ 67 (174)
+.++-.....|+.+|..++. +..+... -..-.+++++| ++.++++ .+++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 44444455678888876653 3222110 01235788998 4444444 467789999986542
Q ss_pred CCCeE------Eeec------CCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEee-------------cc---
Q 042260 68 PQPVM------SYDQ------HTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEY-------------ES--- 118 (174)
Q Consensus 68 ~~~~~------~~~~------~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~-------------~~--- 118 (174)
..... ...+ .-.....++++++++ .+++.+.++.|++||+.+....... ..
T Consensus 717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 21100 0000 113456789999987 5667777899999998764322110 00
Q ss_pred ------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 119 ------RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 119 ------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
-.....++++++++.+++-+.++.|++||..++.+.
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 012468899999998888888999999999876544
No 288
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=6.1e-06 Score=68.88 Aligned_cols=142 Identities=20% Similarity=0.309 Sum_probs=89.5
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--c-----------------------------
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--G----------------------------- 54 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~----------------------------- 54 (174)
..|+.|+..|.|++|++.+|.....+.+|.++++.+.=+.+|.+..++ .
T Consensus 1114 ~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFs 1193 (1516)
T KOG1832|consen 1114 NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFS 1193 (1516)
T ss_pred ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccccceeehh
Confidence 358899999999999999999999999998888766544444332221 1
Q ss_pred -----------CCcEEEEEcCCCCCCCe-EE-eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCc
Q 042260 55 -----------NPHIRLFDVNSSSPQPV-MS-YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA 121 (174)
Q Consensus 55 -----------d~~i~i~d~~~~~~~~~-~~-~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~ 121 (174)
.+.+.+||+.+...... .+ -......-....|+|+.+++. +|| .+||+|.+..++.|..-.-
T Consensus 1194 n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~ 1268 (1516)
T KOG1832|consen 1194 NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD 1268 (1516)
T ss_pred hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee
Confidence 12234555544321100 00 001122234556777776655 455 4699998877766653222
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 122 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
-..=.|||+++.++.-+ .|||+++.+.+..-
T Consensus 1269 ~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1269 YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred cccccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence 23447999999988765 58999998766554
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.10 E-value=0.00052 Score=49.66 Aligned_cols=148 Identities=14% Similarity=0.202 Sum_probs=90.3
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC--C-CCEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH--T-NNVMA 83 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~-~~v~~ 83 (174)
.+++++.++.+..||..+|+.+..+.... .+.......++.+++...++.+..+|..+++..-.. .... . .....
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~ 115 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI-YLTSSPPAGVRSS 115 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE-EE-SSCTCSTB--
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeeecccccccccceeeeEecccCCcceeeee-ccccccccccccc
Confidence 45666899999999999999887777532 221112233556666667778999998887532221 1111 0 11222
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccC-c----------EEEEEEccCCCEEEEeeCCCc-EEEEeCCCC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-A----------VNTVVLHPNQTELISGDQNGN-IRVWDLTAN 151 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-~----------v~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~ 151 (174)
......+..++.+..++.+..+|+++++......... + +..-....++ .++.++.++. +.+ |+.++
T Consensus 116 ~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg 193 (238)
T PF13360_consen 116 SSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATG 193 (238)
T ss_dssp SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTT
T ss_pred cCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCC
Confidence 2233347888888889999999999988766553321 1 1222222344 6666666665 555 99998
Q ss_pred cceeecC
Q 042260 152 SCSCELG 158 (174)
Q Consensus 152 ~~~~~~~ 158 (174)
+..++..
T Consensus 194 ~~~w~~~ 200 (238)
T PF13360_consen 194 EKLWSKP 200 (238)
T ss_dssp EEEEEEC
T ss_pred CEEEEec
Confidence 8665433
No 290
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=8.9e-07 Score=71.09 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=97.4
Q ss_pred cEEEEEeeCCCcEEEEECCCCce--eEEeecCCCCeEEEEEcCC-CceEEEec-----CCcEEEEEcCCCCCCCeE--Ee
Q 042260 5 SVILATASYDKTIKFWEAKSGRC--YRTIQYPDSQVNRLEITPN-KHYLAAAG-----NPHIRLFDVNSSSPQPVM--SY 74 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~~~~~-----d~~i~i~d~~~~~~~~~~--~~ 74 (174)
.++++.|..+|.|-+-..+.... ...+..+..++++++|++- ...++++- +-.++|||+.+.-..|.. .+
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 46788999999999988765443 2333445667899999984 33455553 446899999765222211 11
Q ss_pred ec-CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc-CCCEEEEeeCCCcEEEEe
Q 042260 75 DQ-HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP-NQTELISGDQNGNIRVWD 147 (174)
Q Consensus 75 ~~-~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd 147 (174)
.. -.....+++|..+.+.+.+|...+.++++|+|........-....++.+.+.| ..+++++-. ||.|.+||
T Consensus 150 s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 150 SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence 11 22345578888899999999999999999999654433322334567788888 667676654 99999999
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=1.8e-05 Score=64.75 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=108.3
Q ss_pred cEEEEEeeCCCcEEEEECCCCce---------------eEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRC---------------YRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSP 68 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~ 68 (174)
+.+++.||.||-+|+-.+.+... -+++.+|...|..+.|+.+...+.++ .+|-|-+|-+-.+++
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW 105 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW 105 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccH
Confidence 45899999999999998764211 13345677889999999877777776 467789999877766
Q ss_pred CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
......+...+-|.+++|+.+|..|+..-.||.|.+=.+...+.-..--.......+.|+++.+.++.+-.+|.+.+||.
T Consensus 106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 106 CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecc
Confidence 55555556677899999999999999999999998766654332111111223446778998888888888999999998
Q ss_pred CC
Q 042260 149 TA 150 (174)
Q Consensus 149 ~~ 150 (174)
+.
T Consensus 186 qg 187 (1189)
T KOG2041|consen 186 QG 187 (1189)
T ss_pred cc
Confidence 74
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.05 E-value=0.001 Score=52.44 Aligned_cols=127 Identities=10% Similarity=0.221 Sum_probs=89.7
Q ss_pred EEEEeeCCC-cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCC-cEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 7 ILATASYDK-TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNP-HIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 7 ~l~s~s~D~-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
-++.|-+|| .+-++|.++++.. .+...-+.|.++..+++|+.++.+.+. .+-+.|+.++..+.+- .-.-+-++..
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id--kS~~~lItdf 449 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID--KSEYGLITDF 449 (668)
T ss_pred ceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec--ccccceeEEE
Confidence 467788888 8999998877644 344455679999999999988777554 4666688777544332 2334679999
Q ss_pred EEeeCCCEEEEecCCC----cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEE
Q 042260 85 GFQCDGNWMYSGSEDG----TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELIS 136 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 136 (174)
.|++++++||=+-.+| .|+++|+...+....-.....=.+-+|.|+++.|.-
T Consensus 450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 9999999999887766 689999988764322111122234578899987653
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.03 E-value=4.6e-05 Score=62.62 Aligned_cols=129 Identities=22% Similarity=0.319 Sum_probs=91.9
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCc-eeEEeecCCCCeEEEEEcC-CCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGR-CYRTIQYPDSQVNRLEITP-NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
|...++++++.|-.+..||++... .+.++.........+.|+- ++..++++-...+++||++-+. .++...++|...
T Consensus 125 q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-~pl~s~K~~vs~ 203 (1081)
T KOG0309|consen 125 QHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-TPLCSLKGHVSS 203 (1081)
T ss_pred CCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC-cceEEeccccee
Confidence 456789999999999999998754 4555555556677788885 4455666666779999998765 455667778888
Q ss_pred EEEEEEee-CCCEEEEecCCCcEEEEeCCCCe--eEEeecccCcEEEEEEccCCC
Q 042260 81 VMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPV--CQMEYESRAAVNTVVLHPNQT 132 (174)
Q Consensus 81 v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~ 132 (174)
+..++|+. ....+.+++.||+|+.||-.... ...+.....+|..-.+.|-+.
T Consensus 204 vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 204 VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred eehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 88888875 45568899999999999976432 223333445555555555443
No 294
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.1e-05 Score=59.27 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=69.1
Q ss_pred EeecCCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCC
Q 042260 73 SYDQHTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~ 150 (174)
.+..+...|.+++|+|..+ ++..++.+..|+|.|+++..++..+....++.+++|.-++. .+.+|-.+|.|.+||++.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 3456778899999999766 78889999999999999999988888889999999987654 566888999999999997
Q ss_pred Cc
Q 042260 151 NS 152 (174)
Q Consensus 151 ~~ 152 (174)
++
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 54
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0022 Score=50.87 Aligned_cols=132 Identities=11% Similarity=0.168 Sum_probs=80.7
Q ss_pred CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-e---cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC
Q 042260 14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-A---GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD 89 (174)
Q Consensus 14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 89 (174)
+..|.++|+.+|+...-.. .........|+|++..++- . ++..|.++|+.++....+. .+........|+|+
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT---~~~~~d~~p~~SPD 287 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT---NYPGIDVNGNFVED 287 (419)
T ss_pred CCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc---cCCCccCccEECCC
Confidence 3568888998876544333 3344556789999865443 2 2346778888766433322 22222344579999
Q ss_pred CCEEEEecC-CC--cEEEEeCCCCeeEE-eecccCcEEEEEEccCCCEEEEeeCC---------CcEEEEeCCCCc
Q 042260 90 GNWMYSGSE-DG--TVKIWDLRAPVCQM-EYESRAAVNTVVLHPNQTELISGDQN---------GNIRVWDLTANS 152 (174)
Q Consensus 90 ~~~l~t~~~-dg--~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~ 152 (174)
|+.|+-.+. .+ .|.+.|+.+..... ++.... ...|+|+++.++..+.. ..|.+.|+..+.
T Consensus 288 G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 288 DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 997776654 23 57777887665432 222111 24899999988755432 257888887654
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.86 E-value=0.0051 Score=45.01 Aligned_cols=164 Identities=14% Similarity=0.185 Sum_probs=99.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec-----CCCCeEEEEEcCCCceEEEecCC-----c--EEEEEcCCCCCCCe
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY-----PDSQVNRLEITPNKHYLAAAGNP-----H--IRLFDVNSSSPQPV 71 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~d~-----~--i~i~d~~~~~~~~~ 71 (174)
++.++ .+..++ +.++|..+++...-... .....+++++.++|.+.++.... . -++|-+.... . .
T Consensus 51 ~g~l~-v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~-~ 126 (246)
T PF08450_consen 51 DGRLY-VADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-K-V 126 (246)
T ss_dssp TSEEE-EEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-E-E
T ss_pred CCEEE-EEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-e-E
Confidence 35444 444444 56669888865433332 23457899999999877664211 1 2444443331 1 1
Q ss_pred EEeecCCCCEEEEEEeeCCCEE-EEecCCCcEEEEeCCCCee-------EEeeccc-CcEEEEEEccCCCEEEEeeCCCc
Q 042260 72 MSYDQHTNNVMAVGFQCDGNWM-YSGSEDGTVKIWDLRAPVC-------QMEYESR-AAVNTVVLHPNQTELISGDQNGN 142 (174)
Q Consensus 72 ~~~~~~~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~-------~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~ 142 (174)
............++|+++++.+ ++-+..+.|..+++..... ...+... ...-.+++..+++..++.-..+.
T Consensus 127 ~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 127 TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR 206 (246)
T ss_dssp EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence 1122234567899999999865 5778888999999853211 1112222 24788999999998777777889
Q ss_pred EEEEeCCCCcceeecCcc-cceeEEEEEeec
Q 042260 143 IRVWDLTANSCSCELGLQ-YGLRTFLFYHQD 172 (174)
Q Consensus 143 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~ 172 (174)
|..+|.+ ++....++++ ..+....|.-++
T Consensus 207 I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 207 IVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred EEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 9999998 7777777666 556666665444
No 297
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.82 E-value=0.0023 Score=54.14 Aligned_cols=141 Identities=12% Similarity=0.186 Sum_probs=93.6
Q ss_pred CcEEEE-EeeCCCcEEEEECCCCceeEEeecCCCC-eEEEEEcCC--------CceEEEecCCcEEEEEcCCCCCCCeE-
Q 042260 4 PSVILA-TASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN--------KHYLAAAGNPHIRLFDVNSSSPQPVM- 72 (174)
Q Consensus 4 ~~~~l~-s~s~D~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~--------~~~~~~~~d~~i~i~d~~~~~~~~~~- 72 (174)
+..+|+ .......|+--|+++|+.+..+..+... |..+ .|+ ...+++-.+..+..||.|..+.+.+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 344444 4456677888999999999999877533 4443 332 23455556777888999865422221
Q ss_pred ---EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 73 ---SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 73 ---~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
.| .......+++-..+| +||.|+.+|.||+||--.......+ ..+.+|..+..+.+|+.|++.+ +..+.|++.
T Consensus 570 ~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 570 QSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 11 124556676655554 6899999999999994322222223 3478999999999999877654 557888886
Q ss_pred C
Q 042260 149 T 149 (174)
Q Consensus 149 ~ 149 (174)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 5
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.81 E-value=8.6e-05 Score=61.07 Aligned_cols=142 Identities=15% Similarity=0.349 Sum_probs=94.9
Q ss_pred EEEeeCCCcEEEEECCCC--ce-eEEeecCCCCeEEEEEcCCCceE-EE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 8 LATASYDKTIKFWEAKSG--RC-YRTIQYPDSQVNRLEITPNKHYL-AA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~~-~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+++.+.-+ ..+|++... +. .....+|...++++-|+|+..-+ ++ +.|-.+..||.++.. .++....-......
T Consensus 85 iVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~s~as 162 (1081)
T KOG0309|consen 85 IVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWRSAAS 162 (1081)
T ss_pred EEecCcch-hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeecccccCc
Confidence 44444443 467875432 22 23344677789999999976543 33 457789999998864 33444444556778
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEee-cccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCC
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEY-ESRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.++|+-..-.+.+.+....|++||.+.+.. .... .+-..|+.+.|+- ....+.+.+.|++|++||....
T Consensus 163 qVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred eeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 888885444455567778899999986432 2222 2456788888865 3456788899999999999864
No 299
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.80 E-value=8.3e-05 Score=36.68 Aligned_cols=36 Identities=42% Similarity=0.810 Sum_probs=31.3
Q ss_pred eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEe
Q 042260 71 VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD 106 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd 106 (174)
...+..|...+.++.|.+.+..+++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344567888899999999889999999999999996
No 300
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.80 E-value=0.0092 Score=46.18 Aligned_cols=114 Identities=9% Similarity=0.067 Sum_probs=76.9
Q ss_pred cEEEEEeeC----CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE--e---------cCCcEEEEEcCCCCCC
Q 042260 5 SVILATASY----DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA--A---------GNPHIRLFDVNSSSPQ 69 (174)
Q Consensus 5 ~~~l~s~s~----D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~---------~d~~i~i~d~~~~~~~ 69 (174)
..++++-.. .++|.+.|..+++.+..+..... -..+ ++|+++.+.. + .++.|.+||..+.+..
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~-P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFL-PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCC-Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 344555444 38999999999998888875433 2334 8998876544 3 3578999999887443
Q ss_pred CeEEeecC-----CCCEEEEEEeeCCCEEEEec--CCCcEEEEeCCCCeeEEeecccC
Q 042260 70 PVMSYDQH-----TNNVMAVGFQCDGNWMYSGS--EDGTVKIWDLRAPVCQMEYESRA 120 (174)
Q Consensus 70 ~~~~~~~~-----~~~v~~~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~ 120 (174)
.......- .......+++++|++++... .+..|-+.|+.+.+.+.++.-+.
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence 22222110 12233678899999888654 37899999999988877665543
No 301
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.0046 Score=46.94 Aligned_cols=148 Identities=16% Similarity=0.333 Sum_probs=96.5
Q ss_pred CcEEEEEeeC-CCcEEEEECCC-CceeEEe--ecCCCC----------eEEEEEcCCCceEEEe--cCCcEEEEEcCCCC
Q 042260 4 PSVILATASY-DKTIKFWEAKS-GRCYRTI--QYPDSQ----------VNRLEITPNKHYLAAA--GNPHIRLFDVNSSS 67 (174)
Q Consensus 4 ~~~~l~s~s~-D~~v~vwd~~~-~~~~~~~--~~~~~~----------v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~ 67 (174)
++++++++.+ -|.|.++.++. |.....+ ..|..+ +....+.|++.++++. +.+.+.+|++..+.
T Consensus 99 ~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~ 178 (346)
T COG2706 99 DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK 178 (346)
T ss_pred CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence 3445555554 56799998865 4332221 122222 7778899999887765 45679999998775
Q ss_pred CCCeEEee-cCCCCEEEEEEeeCCCEEEEecC-CCcEEEEeCCCC--ee--EE-------eecccCcEEEEEEccCCCEE
Q 042260 68 PQPVMSYD-QHTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLRAP--VC--QM-------EYESRAAVNTVVLHPNQTEL 134 (174)
Q Consensus 68 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~--~~--~~-------~~~~~~~v~~~~~~~~~~~l 134 (174)
+.+..... .....-..+.|+|++++.+...+ +++|.+|..... +. +. .|......-+|.++|+|++|
T Consensus 179 L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 179 LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE
Confidence 54433221 23456778999999998877665 889999998763 11 11 12334567899999999998
Q ss_pred EEeeC-CCcEEEEeCCCC
Q 042260 135 ISGDQ-NGNIRVWDLTAN 151 (174)
Q Consensus 135 ~s~~~-d~~i~iwd~~~~ 151 (174)
.+.-. ...|-++-+...
T Consensus 259 YasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 259 YASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEecCCCCeEEEEEEcCC
Confidence 76532 235777766643
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.77 E-value=0.0084 Score=45.23 Aligned_cols=146 Identities=14% Similarity=0.216 Sum_probs=92.4
Q ss_pred CCCcEEEEECC-CCceeEEeecCCCCeEEEEEcCCCceEEEe--c-----------------CCcEEEEEcCCCCCCCeE
Q 042260 13 YDKTIKFWEAK-SGRCYRTIQYPDSQVNRLEITPNKHYLAAA--G-----------------NPHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 13 ~D~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~-----------------d~~i~i~d~~~~~~~~~~ 72 (174)
..|.|-|||.. +-+.+.++..+.-.-..+.+.|++..++.+ + +..+-..|..+++.....
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 35679999988 445566666554445667889998554443 2 122233344555433333
Q ss_pred Ee--ecCCCCEEEEEEeeCCCEEEEecCCCc-------EEEEeCCCCeeEEee------cccCcEEEEEEccCCCEEEEe
Q 042260 73 SY--DQHTNNVMAVGFQCDGNWMYSGSEDGT-------VKIWDLRAPVCQMEY------ESRAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 73 ~~--~~~~~~v~~~~~~~~~~~l~t~~~dg~-------v~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~ 137 (174)
.+ ..|+..+..+++..+|..++.....|. +-+++.......... ....-+-++++++++..+++.
T Consensus 155 ~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t 234 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT 234 (305)
T ss_pred ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence 34 347778999999999887777655442 444444332111111 123568999999999888655
Q ss_pred e-CCCcEEEEeCCCCcceeecC
Q 042260 138 D-QNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 138 ~-~d~~i~iwd~~~~~~~~~~~ 158 (174)
+ ..+.+.+||..+++..-...
T Consensus 235 sPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 235 SPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CCCCCEEEEEECCCCCEeeccc
Confidence 5 57789999999998876544
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.0019 Score=53.81 Aligned_cols=145 Identities=15% Similarity=0.199 Sum_probs=102.8
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC-----------ceEEEec--CCcEEEEEcCCCCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK-----------HYLAAAG--NPHIRLFDVNSSSPQ 69 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~--d~~i~i~d~~~~~~~ 69 (174)
+++.+||=|+.. .|.+-|..+-+.++++..|...|+.+.|.|.. .++.+++ .|.|-+||.......
T Consensus 24 ~~~GLiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~ 102 (1062)
T KOG1912|consen 24 SPSGLIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI 102 (1062)
T ss_pred CccceEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh
Confidence 355677777755 68999999999999999999999999998632 2333443 477999999776433
Q ss_pred CeEEeecCCCCEEEEEEee---CC-CEEEEecCCCcEEEEeCCCCeeEEeecccCcE-EEEEEcc-CCCEEEEeeCCCcE
Q 042260 70 PVMSYDQHTNNVMAVGFQC---DG-NWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV-NTVVLHP-NQTELISGDQNGNI 143 (174)
Q Consensus 70 ~~~~~~~~~~~v~~~~~~~---~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v-~~~~~~~-~~~~l~s~~~d~~i 143 (174)
..++.|...+..++|.+ +. .+++.-..-..+-+|+..++.....+.....+ .|+.+.| +.+.+..-+..|.+
T Consensus 103 --~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 103 --NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred --hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence 33557788888898876 23 35666666779999999888766655544444 5688888 44556655666777
Q ss_pred EEEeCCC
Q 042260 144 RVWDLTA 150 (174)
Q Consensus 144 ~iwd~~~ 150 (174)
.+-+.-.
T Consensus 181 l~~~~l~ 187 (1062)
T KOG1912|consen 181 LSCKDLG 187 (1062)
T ss_pred EEEeccC
Confidence 7766553
No 304
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.74 E-value=0.012 Score=45.62 Aligned_cols=112 Identities=8% Similarity=0.090 Sum_probs=78.5
Q ss_pred CCceEEEecCCcEEEEEcCCCCCCCeEEeec----------CCCCEEEEEEeeCCCEEEEe----------cCCCcEEEE
Q 042260 46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ----------HTNNVMAVGFQCDGNWMYSG----------SEDGTVKIW 105 (174)
Q Consensus 46 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~t~----------~~dg~v~iw 105 (174)
++..+..+..+.+.+-|+..........+.. .......++++++++.++-. ...+.|.++
T Consensus 205 dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 205 SGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred CCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence 5666555555888888864432221111110 12233348899888876653 223589999
Q ss_pred eCCCCeeEEeecccCcEEEEEEccCCC-EEEEee-CCCcEEEEeCCCCcceeec
Q 042260 106 DLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGD-QNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 106 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~ 157 (174)
|..+.+.+..+.....+..++++|+++ .|.+.. .++.|.+.|..+.+..-+.
T Consensus 285 D~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 285 DAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999999998888888999999999999 776555 5788999999998877776
No 305
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.74 E-value=0.00058 Score=54.77 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=55.9
Q ss_pred CCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCC
Q 042260 35 DSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR 108 (174)
Q Consensus 35 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~ 108 (174)
.+.+.+++++|+.. ++.+..|+.+.+||...+. .......-....++|+|+|..++.|+.-|.+.+||+.
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCe----eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 56788999999754 5667799999999987652 2222344567888999999999999999999999975
No 306
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00024 Score=57.40 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=66.2
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEE-EEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVN-TVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
...+.-+.|+|....||++..+|.+.+..++.++ +.++. ++.++. +++|.|+|+.++.|=.||+|++.|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR-lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR-LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccce-eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3567788899999999999999999999888443 55555 555566 99999999999999999999999999988776
Q ss_pred ec
Q 042260 156 EL 157 (174)
Q Consensus 156 ~~ 157 (174)
+.
T Consensus 99 ~~ 100 (665)
T KOG4640|consen 99 SF 100 (665)
T ss_pred cc
Confidence 63
No 307
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.73 E-value=0.0027 Score=55.11 Aligned_cols=142 Identities=19% Similarity=0.355 Sum_probs=86.5
Q ss_pred CCcEEEEEeeC------CCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCceEEEecC----CcEEEEEcCCCCCCCe
Q 042260 3 QPSVILATASY------DKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHYLAAAGN----PHIRLFDVNSSSPQPV 71 (174)
Q Consensus 3 ~~~~~l~s~s~------D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~ 71 (174)
+++.++|..+. -+.+|||+-+ |+ +.+...+ ++--..++|.|+|.++++... ..|-+|.-+ +.....
T Consensus 219 GDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhge 295 (928)
T PF04762_consen 219 GDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGE 295 (928)
T ss_pred CCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeee
Confidence 36677777664 2579999865 54 3333332 222346899999999988642 335555532 211112
Q ss_pred EEe--ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee----EEeecccCcEEEEEEccCCC-EEEEeeCCCcEE
Q 042260 72 MSY--DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC----QMEYESRAAVNTVVLHPNQT-ELISGDQNGNIR 144 (174)
Q Consensus 72 ~~~--~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~ 144 (174)
..+ ......+..+.|++++..|+.--.|. |.+|-+..... ...+.....+..+.|+|... .|...+.+|.+.
T Consensus 296 F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~ 374 (928)
T PF04762_consen 296 FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYE 374 (928)
T ss_pred EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEE
Confidence 222 23456799999999999999877665 99998876432 22223334455588888544 366666656665
Q ss_pred EEeC
Q 042260 145 VWDL 148 (174)
Q Consensus 145 iwd~ 148 (174)
.++.
T Consensus 375 ~~~~ 378 (928)
T PF04762_consen 375 IYDF 378 (928)
T ss_pred EEEE
Confidence 5443
No 308
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0023 Score=51.20 Aligned_cols=145 Identities=14% Similarity=0.220 Sum_probs=94.8
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc--------eEEEecCCcEEEEEcCCCCCCCeEE
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH--------YLAAAGNPHIRLFDVNSSSPQPVMS 73 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~d~~i~i~d~~~~~~~~~~~ 73 (174)
+..+-++.+++....++--|+++|+.+..++.++. |+-+.+.|+.+ .+++-.+..+.-||.+......+..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 33444566677777788889999999999988765 66666776532 3455567788889988654322222
Q ss_pred eecC----CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 74 YDQH----TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 74 ~~~~----~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
-+.| ..+..|.+-..+ .+||.||.+|.||+||.-.......+ ..+.+|.-+....+|..|++.+ +..+.+-|.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2222 233445444433 47899999999999996222111112 4477899888888998776543 557777666
Q ss_pred C
Q 042260 149 T 149 (174)
Q Consensus 149 ~ 149 (174)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 5
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.72 E-value=0.00031 Score=52.57 Aligned_cols=144 Identities=19% Similarity=0.433 Sum_probs=94.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCc-ee----EEeecCC------------CCeEEEEEcCC---CceEEEecCCcEEEEEcC
Q 042260 5 SVILATASYDKTIKFWEAKSGR-CY----RTIQYPD------------SQVNRLEITPN---KHYLAAAGNPHIRLFDVN 64 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~-~~----~~~~~~~------------~~v~~~~~~~~---~~~~~~~~d~~i~i~d~~ 64 (174)
+.++++|...|.|.+|..+... |. -.++.|+ ..|..+.|-.. +.++.++.|.+|++|.+.
T Consensus 38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy 117 (460)
T COG5170 38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY 117 (460)
T ss_pred cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence 5689999999999999754322 11 1223332 24566666543 457888889999999875
Q ss_pred CCCC----------------------------------------CCeEEe-ecCCCCEEEEEEeeCCCEEEEecCCCcEE
Q 042260 65 SSSP----------------------------------------QPVMSY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVK 103 (174)
Q Consensus 65 ~~~~----------------------------------------~~~~~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~ 103 (174)
.... .+...+ +.|...+.++.++.+...+.++ .|=.|.
T Consensus 118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrIN 196 (460)
T COG5170 118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRIN 196 (460)
T ss_pred cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceeee
Confidence 3310 001111 3567778888888887776654 567899
Q ss_pred EEeCCCCeeEE---eec-c-----cCcEEEEEEccCC-CEEEEeeCCCcEEEEeCC
Q 042260 104 IWDLRAPVCQM---EYE-S-----RAAVNTVVLHPNQ-TELISGDQNGNIRVWDLT 149 (174)
Q Consensus 104 iwd~~~~~~~~---~~~-~-----~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~ 149 (174)
+|++.-..-.. .+. + ...|++..|+|.. +.+.-.++.|.|++-|++
T Consensus 197 LWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 197 LWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 99986533211 111 1 2358899999964 556667788999999999
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.70 E-value=0.0082 Score=47.70 Aligned_cols=137 Identities=10% Similarity=0.113 Sum_probs=78.2
Q ss_pred EEEEEeeCC--CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Eec---CCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 6 VILATASYD--KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAG---NPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 6 ~~l~s~s~D--~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~---d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
.++++.+.+ ..|.++|+.+++..+ +.........-.|+|++..++ .+. ...|.+.|+.+++...+. ..+. .
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~-~ 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGK-N 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCC-c
Confidence 455555544 457777887776433 332322233457999987544 332 125778888766543322 2221 1
Q ss_pred CEEEEEEeeCCCEEEEecCC---------CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CCc--EEEEe
Q 042260 80 NVMAVGFQCDGNWMYSGSED---------GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NGN--IRVWD 147 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~d---------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~--i~iwd 147 (174)
...|+|+|+.++..+.. ..|.+.|+....... +..........|+|+++.|+..+. .+. +.+.+
T Consensus 323 ---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 ---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred ---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 23899999988776543 267777887655332 222223345789999998765443 333 44555
Q ss_pred CC
Q 042260 148 LT 149 (174)
Q Consensus 148 ~~ 149 (174)
+.
T Consensus 399 l~ 400 (419)
T PRK04043 399 LN 400 (419)
T ss_pred cC
Confidence 53
No 311
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.63 E-value=0.00031 Score=34.47 Aligned_cols=30 Identities=30% Similarity=0.681 Sum_probs=27.2
Q ss_pred ccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 118 SRAAVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 118 ~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
+...|.++.++|+++.+++++.|+.+++||
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456799999999999999999999999996
No 312
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.63 E-value=0.0047 Score=39.47 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=61.1
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
.-|+.||.|..||+|+ ..+.+..+...+ .|..+.-...+.+..+..+++|-+|+-....+. .+ ...++.++.
T Consensus 16 ~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~-~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWR----iK-SK~~~~~~~ 87 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFK--GDEIVAEITETD-KVTSLCSLGGGRFAYALANGTVGVYDRSQRLWR----IK-SKNQVTSMA 87 (111)
T ss_pred ceEEEecCCcEEEEEe--CCcEEEEEeccc-ceEEEEEcCCCEEEEEecCCEEEEEeCcceeee----ec-cCCCeEEEE
Confidence 3588999999999996 446777777654 577777666677777778999988886432221 11 234466666
Q ss_pred EeeC---CC-EEEEecCCCcEE
Q 042260 86 FQCD---GN-WMYSGSEDGTVK 103 (174)
Q Consensus 86 ~~~~---~~-~l~t~~~dg~v~ 103 (174)
+..- |. .|++|-++|.|-
T Consensus 88 ~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 88 FYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEcCCCCCceEEEEEecCCeEE
Confidence 5432 22 688888888774
No 313
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.57 E-value=0.011 Score=51.39 Aligned_cols=146 Identities=16% Similarity=0.254 Sum_probs=87.2
Q ss_pred CcEEEEEeeC---CCcEEEEECCCCceeEEeec----CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec
Q 042260 4 PSVILATASY---DKTIKFWEAKSGRCYRTIQY----PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s~---D~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
+|.+||+.-. ...|.+|. ++|-....|.. .+..|..+.|+.++.+++....+.|.+|....--+-....+..
T Consensus 267 sG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~ 345 (928)
T PF04762_consen 267 SGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRF 345 (928)
T ss_pred CCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEc
Confidence 4566777665 34577776 44544444433 3457899999999999887765569999864322211111111
Q ss_pred C-CCCEEEEEEee-CCCEEEEecCCCcEEEEeC-------------------------------CC-----CeeEEeecc
Q 042260 77 H-TNNVMAVGFQC-DGNWMYSGSEDGTVKIWDL-------------------------------RA-----PVCQMEYES 118 (174)
Q Consensus 77 ~-~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~-------------------------------~~-----~~~~~~~~~ 118 (174)
. ...+..+.|++ +...+...+.+|.+..+++ +. |-+...+..
T Consensus 346 ~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~ 425 (928)
T PF04762_consen 346 SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL 425 (928)
T ss_pred cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence 1 12233356665 2333444444344433332 11 112233455
Q ss_pred cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 119 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
..+|++++|+++...+++-..||.|.+|....
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 67899999999988899999999999998543
No 314
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.00024 Score=58.80 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=84.5
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----------CCcEEEEEcCCCCCCCeEEee
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----------NPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~ 75 (174)
.++|.|-..|+|-++|+.++....++..|...|.++.|-....++..+. -+.+.+-|++++..+.....+
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~ 517 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQ 517 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCC
Confidence 4689999999999999999999888888989999999977655554332 123567889988666555433
Q ss_pred -cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe
Q 042260 76 -QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV 111 (174)
Q Consensus 76 -~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~ 111 (174)
....+|..+..+..+++++-.-.|.-+.+||+++..
T Consensus 518 ~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 518 KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred CCCcCcceeeeecccCceEEEEecccchHHHhhccch
Confidence 345789999999999999999999999999997643
No 315
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.50 E-value=0.0093 Score=38.12 Aligned_cols=90 Identities=22% Similarity=0.315 Sum_probs=61.2
Q ss_pred CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEE
Q 042260 47 KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVV 126 (174)
Q Consensus 47 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~ 126 (174)
+.+++++.|..||+|+-.. .+... .....+..+..... ..|+-+..+|+|-+|+-.... .....+..+.+++
T Consensus 16 ~eLlvGs~D~~IRvf~~~e----~~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--WRiKSK~~~~~~~ 87 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE----IVAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--WRIKSKNQVTSMA 87 (111)
T ss_pred ceEEEecCCcEEEEEeCCc----EEEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee--eeeccCCCeEEEE
Confidence 4578888999999998642 23322 34577888886655 568889999999999875432 2334455566666
Q ss_pred Ecc-CC---CEEEEeeCCCcEE
Q 042260 127 LHP-NQ---TELISGDQNGNIR 144 (174)
Q Consensus 127 ~~~-~~---~~l~s~~~d~~i~ 144 (174)
+.. ++ ..|++|=++|.|-
T Consensus 88 ~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 88 FYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEcCCCCCceEEEEEecCCeEE
Confidence 543 32 3688888888764
No 316
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.0022 Score=53.11 Aligned_cols=108 Identities=13% Similarity=0.273 Sum_probs=78.7
Q ss_pred CCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCC----C---------eEEeecCCCCEEEEEEeeCCCEEEEecCCCc
Q 042260 36 SQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQ----P---------VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT 101 (174)
Q Consensus 36 ~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~----~---------~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~ 101 (174)
....++.|+....+++. +.||.+++..+.+.... . -.++.+|...|.-+.|+.+...+-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 45788999987777765 46888898877543211 1 1135689999999999999889999999999
Q ss_pred EEEEeCCCCeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcE
Q 042260 102 VKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNI 143 (174)
Q Consensus 102 v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i 143 (174)
|.+|-+-.+...... ..++.|.+++|+.+|..+...-+||.|
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 999998765432211 235678899999888877666566554
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.46 E-value=0.0047 Score=49.29 Aligned_cols=140 Identities=16% Similarity=0.221 Sum_probs=76.5
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC--------CCC-CeEEeec
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS--------SPQ-PVMSYDQ 76 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~--------~~~-~~~~~~~ 76 (174)
.+|...+.+ .|.+||+++++.++.+... +|..+.|++++.+++...+..+.+++.... +.. .......
T Consensus 118 ~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E 194 (443)
T PF04053_consen 118 NLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHE 194 (443)
T ss_dssp SSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEE
T ss_pred cEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEE
Confidence 345555544 8999999999999999754 388999999999888777778888775432 111 1222222
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
....|.+..|..+ -+++|... .++. +-.+..........++.=+...|..+.|.....|+.|..+.+.....
T Consensus 195 ~~~~IkSg~W~~d-~fiYtT~~--~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~ 266 (443)
T PF04053_consen 195 ISERIKSGCWVED-CFIYTTSN--HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSEL 266 (443)
T ss_dssp E-S--SEEEEETT-EEEEE-TT--EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHH
T ss_pred ecceeEEEEEEcC-EEEEEcCC--eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHH
Confidence 2567888888765 55565554 6666 33333332223345666667777777888888888888877765433
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.056 Score=45.79 Aligned_cols=146 Identities=12% Similarity=0.205 Sum_probs=90.5
Q ss_pred EEEEEeeCCCc-----EEEEECCC------Ccee--EEee---cC--CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCC
Q 042260 6 VILATASYDKT-----IKFWEAKS------GRCY--RTIQ---YP--DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSS 66 (174)
Q Consensus 6 ~~l~s~s~D~~-----v~vwd~~~------~~~~--~~~~---~~--~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~ 66 (174)
.+|++-+.|+. +++||++. .++. +.+. .+ ..++..++++.+-..++.| .+|.|.++..+..
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 46777766655 99999753 2333 1221 12 4567788888776666655 6777777754321
Q ss_pred CC--CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEee-cccCcEEEEEEccCCCEEEEeeCCCc
Q 042260 67 SP--QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEY-ESRAAVNTVVLHPNQTELISGDQNGN 142 (174)
Q Consensus 67 ~~--~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~ 142 (174)
.. ....-......+|+++++..+++.++-......|.+|.+....+ .... .++...+|-.+++....+++++.. .
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~ 236 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-F 236 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-e
Confidence 11 11121223467899999998888633333445788888864332 2223 456678999999877766666544 6
Q ss_pred EEEEeCCCCc
Q 042260 143 IRVWDLTANS 152 (174)
Q Consensus 143 i~iwd~~~~~ 152 (174)
+.+||.....
T Consensus 237 l~fY~sd~~~ 246 (933)
T KOG2114|consen 237 LYFYDSDGRG 246 (933)
T ss_pred EEEEcCCCcc
Confidence 9999988543
No 319
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.00039 Score=49.72 Aligned_cols=142 Identities=10% Similarity=0.176 Sum_probs=77.1
Q ss_pred EEEEeeCCCcEEEEECCCCce-eEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
++..-|.|+.|+=++++..+. .+....+...-..+ .-...+++++.++.+.+|.+.......-........-.+.+.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~--~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV--TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeec--ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 344556677777777654332 11111111111111 124456777789999998876321111111001111122222
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-cc-CcEEEEEEccCCCEEEEe--eCCCcEEEEeCCC
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SR-AAVNTVVLHPNQTELISG--DQNGNIRVWDLTA 150 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~l~s~--~~d~~i~iwd~~~ 150 (174)
.-.++.+.++++.||.||.|++...+...... +. .++........++++..+ |.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 23356688999999999999998766554333 22 445555555566666666 6677777777764
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.011 Score=49.35 Aligned_cols=138 Identities=9% Similarity=0.161 Sum_probs=90.8
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
.++++=|..+|.|++++.... . .....|... .-.|.+++++ .||.+-|-.+-+.+......+ ...+.+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiks 117 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKS 117 (846)
T ss_pred cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec---CCccee
Confidence 457888999999999986543 2 222222221 4467777665 567788877766543333332 356778
Q ss_pred EEEeeC-----CCEEEEecCCCcEEEEeCC---CCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 84 VGFQCD-----GNWMYSGSEDGTVKIWDLR---APVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 84 ~~~~~~-----~~~l~t~~~dg~v~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
++++|+ .+.+++|+.-| +.++.-+ ....+......++|.++.| .|+++|=+..+| |++||+...+..-
T Consensus 118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 118 IALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLT 193 (846)
T ss_pred EEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceee
Confidence 888886 66799999998 7666532 2222333355788999999 567777776555 9999999887664
Q ss_pred ec
Q 042260 156 EL 157 (174)
Q Consensus 156 ~~ 157 (174)
..
T Consensus 194 ~i 195 (846)
T KOG2066|consen 194 NI 195 (846)
T ss_pred cc
Confidence 43
No 321
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.39 E-value=0.045 Score=43.40 Aligned_cols=48 Identities=13% Similarity=0.407 Sum_probs=39.5
Q ss_pred cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcC
Q 042260 16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVN 64 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~ 64 (174)
.|++|+.. |+.+.++.-..+.+-.+.|+.+..+++...||.+++||+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 48888744 6677777655578999999998888888899999999985
No 322
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.38 E-value=0.013 Score=46.67 Aligned_cols=132 Identities=11% Similarity=0.153 Sum_probs=86.0
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee--cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA--GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN 91 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 91 (174)
..+.+++++... +.....-.++|....|.|.+.-++ .+ -...+.++|++.+ +. +......-..+-|+|+++
T Consensus 255 snLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----l~-~~~Pe~~rNT~~fsp~~r 328 (561)
T COG5354 255 SNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----LR-FYFPEQKRNTIFFSPHER 328 (561)
T ss_pred ceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc----eE-EecCCcccccccccCccc
Confidence 346677666332 222223356899999998655433 33 2456789999875 11 223334455667899999
Q ss_pred EEEEecCC---CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee------CCCcEEEEeCCCCc
Q 042260 92 WMYSGSED---GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD------QNGNIRVWDLTANS 152 (174)
Q Consensus 92 ~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~ 152 (174)
+++.++-| |.+.+||......+..-.......-+.|+|++.++.+.. .|..|+|||+.-..
T Consensus 329 ~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 329 YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 99987765 679999987665444222234456778999999877542 36779999998544
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.33 E-value=0.029 Score=46.34 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=64.6
Q ss_pred CcEEEEEcCCC---CCCCeEEeecCCCCEEEEEEeeCCCEEEEe-cCCCcEEEEeCCCCe------------eEEeeccc
Q 042260 56 PHIRLFDVNSS---SPQPVMSYDQHTNNVMAVGFQCDGNWMYSG-SEDGTVKIWDLRAPV------------CQMEYESR 119 (174)
Q Consensus 56 ~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~~------------~~~~~~~~ 119 (174)
+.+.+.|.++. ... +..+-.-......+.++|+|++++.+ ..+.+|.+.|+.+.+ ...+....
T Consensus 296 n~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 296 SKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 45677776651 111 22222234667889999999986655 558899999997743 23333444
Q ss_pred CcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 120 AAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 120 ~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
......+|.++++...+---|..|-.||+..
T Consensus 375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 5556778999988777777899999999987
No 324
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.33 E-value=0.0026 Score=50.06 Aligned_cols=136 Identities=17% Similarity=0.235 Sum_probs=73.6
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCC---C----CCCCeEEeecCCC
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS---S----SPQPVMSYDQHTN 79 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~---~----~~~~~~~~~~~~~ 79 (174)
=|+.|...|.|.||....++... ......-....+.+- ...+..-.+-|+.. . +..+...++...+
T Consensus 15 Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g 87 (395)
T PF08596_consen 15 ELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF-----SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQG 87 (395)
T ss_dssp EEEEEETTS-EEEEEEEE--------------------S-------GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-
T ss_pred eEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc-----cccCCCcceEEehhhCCcccccccCchhheeccCC
Confidence 47888889999999876644332 000011111111111 01112223333321 1 1234444556689
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---------cCcEEEEEEc-----cCC---CEEEEeeCCCc
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---------RAAVNTVVLH-----PNQ---TELISGDQNGN 142 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---------~~~v~~~~~~-----~~~---~~l~s~~~d~~ 142 (174)
+|++++.+ +=.+++.|..+|.+.|.|+|.+.++....- ...+.++.|. .++ ..+++|+..|.
T Consensus 88 ~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 88 PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 99999986 455899999999999999999998765321 2346677775 122 46788999999
Q ss_pred EEEEeCCC
Q 042260 143 IRVWDLTA 150 (174)
Q Consensus 143 i~iwd~~~ 150 (174)
+.+|.+..
T Consensus 167 v~~fkIlp 174 (395)
T PF08596_consen 167 VLTFKILP 174 (395)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99998863
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0044 Score=50.92 Aligned_cols=104 Identities=19% Similarity=0.326 Sum_probs=75.2
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEe----ecC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSY----DQH 77 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~----~~~ 77 (174)
..+++-|+.-|.+.+|+..+++ .+..+. ....+..+..++...+++++. .+.|.++.+....+...... ..|
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 4578889999999999866554 333332 344566678888877777654 55678888766433322211 236
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~ 109 (174)
...|++++|+++++.+++|..-|.|.+-.+..
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 78899999999999999999999998887765
No 326
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0053 Score=49.15 Aligned_cols=89 Identities=17% Similarity=0.439 Sum_probs=60.0
Q ss_pred CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC
Q 042260 14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD 89 (174)
Q Consensus 14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 89 (174)
-.++-|||++ +..+.. ..+++=+++-|+|.|.+++.++ .|.+-+||..+. +.+..+.+ ...+-..|+|+
T Consensus 293 PAkvtifnlr-~~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~--K~i~~~~a--~~tt~~eW~Pd 365 (566)
T KOG2315|consen 293 PAKVTIFNLR-GKPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR--KLIAKFKA--ANTTVFEWSPD 365 (566)
T ss_pred cceEEEEcCC-CCEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch--hhcccccc--CCceEEEEcCC
Confidence 3445556544 233332 3445667888999988765443 477999999764 44444333 45666789999
Q ss_pred CCEEEEecC------CCcEEEEeCCC
Q 042260 90 GNWMYSGSE------DGTVKIWDLRA 109 (174)
Q Consensus 90 ~~~l~t~~~------dg~v~iwd~~~ 109 (174)
|.+|+|+.. |+.++||+...
T Consensus 366 Ge~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CcEEEEEeccccEEecCCeEEEEecC
Confidence 999999864 78899999754
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.022 Score=48.04 Aligned_cols=147 Identities=12% Similarity=0.203 Sum_probs=92.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCC-eEEEEEcCC-CceEEEecCC-----cEEEEEcCCC---C-CCCe-
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPN-KHYLAAAGNP-----HIRLFDVNSS---S-PQPV- 71 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~-~~~~~~~~d~-----~i~i~d~~~~---~-~~~~- 71 (174)
++..++-|+.||.|.+.+ +.-+.++.++.++.. +..+..... ..+++.+.|+ .+++|+++.- . +.+.
T Consensus 34 ~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 345688899999887775 233445677665544 444433333 2344445433 4799998532 1 2222
Q ss_pred --EEe----ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeC---CC--CeeEEeecccCcEEEEEEccCCCE-EEEeeC
Q 042260 72 --MSY----DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL---RA--PVCQMEYESRAAVNTVVLHPNQTE-LISGDQ 139 (174)
Q Consensus 72 --~~~----~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~---~~--~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~ 139 (174)
..+ +....+++.++.+.+-+.+|.|-.+|.|..+.= |. .+.......+.+|+.+++..++.. +++++
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T- 191 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT- 191 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe-
Confidence 111 123567888999888999999999999988752 11 122233345789999999888776 33343
Q ss_pred CCcEEEEeCCCCc
Q 042260 140 NGNIRVWDLTANS 152 (174)
Q Consensus 140 d~~i~iwd~~~~~ 152 (174)
...|.+|.+....
T Consensus 192 t~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 192 TEQVMLYSLSGRT 204 (933)
T ss_pred cceeEEEEecCCC
Confidence 4469999998544
No 328
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.27 E-value=0.028 Score=44.15 Aligned_cols=147 Identities=7% Similarity=0.091 Sum_probs=86.1
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCC----------CeE-EEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDS----------QVN-RLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~----------~v~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 75 (174)
.+..++.++.+.-+|.++|+.+-....... .+. ..... ++.++++..++.+..+|.++++..=...
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~-- 147 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVAWQTK-- 147 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCccccc--
Confidence 456677889999999999988766543320 010 11111 3455666677889999988875322111
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEE--EEcc--CCCEEEEeeCCCcEEEEeCCCC
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTV--VLHP--NQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~--~~~~--~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.. ..+.+.-.. .+..++.+..++.+.-+|.++.+....+....+...+ .-+| .+..++.++.++.+...|.+++
T Consensus 148 ~~-~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 148 VA-GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred CC-CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence 11 111111011 1345666778899999999988877655432211000 0011 1235667778899999999988
Q ss_pred cceeecC
Q 042260 152 SCSCELG 158 (174)
Q Consensus 152 ~~~~~~~ 158 (174)
+..++.+
T Consensus 226 ~~~W~~~ 232 (394)
T PRK11138 226 QLIWQQR 232 (394)
T ss_pred hhhheec
Confidence 8776643
No 329
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0029 Score=51.36 Aligned_cols=90 Identities=17% Similarity=0.307 Sum_probs=64.3
Q ss_pred CCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE-EEEEeeCCCEEEEecCCCcEEEEeCCCCeeE
Q 042260 36 SQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM-AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ 113 (174)
Q Consensus 36 ~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~ 113 (174)
..+..+.|+|.-.+++.. .++.+-+.-++ .+.+.+.+-+..++. +++|.++|+.++-|-.||+|++.|+.++-..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 347788999987777765 45666665554 344555555556666 9999999999999999999999999886655
Q ss_pred Ee--ecccCcEEEEEEc
Q 042260 114 ME--YESRAAVNTVVLH 128 (174)
Q Consensus 114 ~~--~~~~~~v~~~~~~ 128 (174)
.. +.....|.+..|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 44 3334456666664
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.21 E-value=0.019 Score=45.89 Aligned_cols=132 Identities=11% Similarity=0.080 Sum_probs=69.3
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
+++++. ..||...++.......... +......|.+.+.+.+.-.+..|+++.--.+........+ ..+..+
T Consensus 44 gr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~---~~~~~I 114 (443)
T PF04053_consen 44 GRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP---FSVEKI 114 (443)
T ss_dssp SSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----S---S-EEEE
T ss_pred CCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCC---cccceE
Confidence 444444 5577778887433332221 2344567777777655555677888632222111111111 123332
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
-. |..|...+.+ .|.+||..+.+.+..+.... |..+.|+++++.|+..+.+ .+.+++.+..
T Consensus 115 f~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 115 FG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp E----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred Ec---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 22 6766666555 89999999998888777553 8999999999999988766 5777665543
No 331
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0016 Score=50.95 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=93.5
Q ss_pred EEEEEeeCCCcEEEEECCC--Cce-eEEeecCCCCeEEEEEcCCCceEEEe-c-CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 6 VILATASYDKTIKFWEAKS--GRC-YRTIQYPDSQVNRLEITPNKHYLAAA-G-NPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
.+++++|.||.+|.|.... |-+ +.-+..|-..+.+++.+-++.++.+. . |..+|++|+.+-.......+..-.+.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 5789999999999997443 222 23334566667888888888777764 3 67899999876433222222111121
Q ss_pred EEEEEEeeCC----CEEEEecCCCcEEEEeCCCCeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 81 VMAVGFQCDG----NWMYSGSEDGTVKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 81 v~~~~~~~~~----~~l~t~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
+.. .. +.| ..-++.-.++.+.++|-+...+...+ -+.++|..+-+++.+..+.+....|.|.-|..+.
T Consensus 101 a~w-v~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 101 AEW-VT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred eEE-ec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 211 11 122 12233346789999998765443222 3568999999999999999988889999999884
No 332
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.17 E-value=0.027 Score=44.26 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=86.5
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCCC----C---eEEEEEcC---CCceEEEecCCcEEEEEcCCCCCCCeEEeecC
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPDS----Q---VNRLEITP---NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~----~---v~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
++.++.++.+...|.++|+.+-....... . ...+..+| ++.+++++.++.+..+|..+++. . +...
T Consensus 208 v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~--~--W~~~ 283 (394)
T PRK11138 208 AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI--V--WKRE 283 (394)
T ss_pred EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE--E--Eeec
Confidence 45567788899999998887544432110 0 01111122 44555666678888889877642 1 1111
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
........ ..+..++.++.+|.+...|..+.+....... .....+.++ .+..|+.++.||.+...|..+++...
T Consensus 284 ~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 284 YGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 11111111 2466777888899999999988765543321 111222222 35667888999999999999998887
Q ss_pred ecCc
Q 042260 156 ELGL 159 (174)
Q Consensus 156 ~~~~ 159 (174)
+...
T Consensus 360 ~~~~ 363 (394)
T PRK11138 360 QQKV 363 (394)
T ss_pred EEEc
Confidence 6543
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.17 E-value=0.066 Score=40.84 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=80.4
Q ss_pred CcEEEEECCCC-----ce--eEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCC-CCCeEEeecCCCCEEEEEE
Q 042260 15 KTIKFWEAKSG-----RC--YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSS-PQPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 15 ~~v~vwd~~~~-----~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~ 86 (174)
|.|.++++... +. +.... .+++|.++.-- .+. ++++.+..+.+|++...+ ......+.. ...+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~-~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDS-PFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-B-SSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecc-eEEEEEEec
Confidence 88999998874 21 22222 25678887655 344 555556889999998765 333332222 235555554
Q ss_pred eeCCCEEEEecCCCcEEEEeCCC-CeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 87 QCDGNWMYSGSEDGTVKIWDLRA-PVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 87 ~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.+++++.|.....+.++..+. ......+ .....+.++.+.++++.++.+..+|.+.++....
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 366889998888888774432 2211111 2245588888886667889999999999988873
No 334
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.16 E-value=0.0027 Score=34.14 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=31.1
Q ss_pred cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 117 ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 117 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
.....|..+.|+|+...||.|+.+|.|.++.+ +.++.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 34567999999999999999999999999998 44443
No 335
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.12 E-value=0.042 Score=43.88 Aligned_cols=136 Identities=16% Similarity=0.231 Sum_probs=85.3
Q ss_pred eeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe------------cCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 11 ASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA------------GNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 11 ~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
.+.++++++|.+..+..+.....-...=..+.|++.|.++..- +...+.|++++... .++. ..-.
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~--~~~~ 274 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVE--KDLK 274 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-ccee--cccc
Confidence 3456667777766555554443333233456777777654321 12346777776332 2222 1346
Q ss_pred CCEEEEEEeeCCCEEEEe--cCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCCCC
Q 042260 79 NNVMAVGFQCDGNWMYSG--SEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLTAN 151 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~ 151 (174)
+.|...+|.|.++.|+.. -.+-.+.++|++.- ... ....+.=+.+.|+|.++.++.++-| |.|-+||....
T Consensus 275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~-~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF-YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccceeeeecccCCceeEEecccccceeecccccc-eEE-ecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 889999999988876554 46788999999865 222 2333445778899999988876654 56888887753
No 336
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=97.10 E-value=0.04 Score=39.44 Aligned_cols=108 Identities=13% Similarity=0.256 Sum_probs=69.8
Q ss_pred cCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC---C---cEEEE---eCC----CC
Q 042260 44 TPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED---G---TVKIW---DLR----AP 110 (174)
Q Consensus 44 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---g---~v~iw---d~~----~~ 110 (174)
.+.+.++++.+...|..|++......+...+.. .+.|..+.++..|++++|--++ . .+|+| ... ++
T Consensus 26 ~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 26 GGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred cCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 343455565667789999998666566666654 4889999999999999995322 2 55653 322 11
Q ss_pred ee---------------------EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 111 VC---------------------QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 111 ~~---------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
.. +.+.....++.+++..|....|+.|+. +.+.||-+.....
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTI 167 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEE
Confidence 11 111223456788999986555666654 4788888876544
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.0021 Score=54.09 Aligned_cols=107 Identities=16% Similarity=0.277 Sum_probs=80.4
Q ss_pred EEEEEcCCCceEEEe-----cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE
Q 042260 39 NRLEITPNKHYLAAA-----GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ 113 (174)
Q Consensus 39 ~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~ 113 (174)
+-.+|+|...+++.+ ..|.+.||- ++++++.-.+++.| +.+++|+|..-.++.|=.-|.+.+|.....+..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 346799988877654 256677764 34555544444444 556999998778888888999999998765432
Q ss_pred -EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 114 -MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 114 -~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
....++.+|.-+.|+|+|+.+.++..=|.|.+|-..
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 223567899999999999999999999999999876
No 338
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.03 E-value=0.054 Score=41.33 Aligned_cols=128 Identities=15% Similarity=0.278 Sum_probs=73.6
Q ss_pred CCcEEEEECCCCc-eeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCC--CCCCCeEEeecCCCCEEEEEEee
Q 042260 14 DKTIKFWEAKSGR-CYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNS--SSPQPVMSYDQHTNNVMAVGFQC 88 (174)
Q Consensus 14 D~~v~vwd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~ 88 (174)
.+.|.+|++...+ ....-.. ....+.++.... .+++.+ .-..+.++.++. .+... ..-+.....+.++.+-.
T Consensus 106 g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~--~~I~vgD~~~sv~~~~~~~~~~~l~~-va~d~~~~~v~~~~~l~ 182 (321)
T PF03178_consen 106 GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK--NYILVGDAMKSVSLLRYDEENNKLIL-VARDYQPRWVTAAEFLV 182 (321)
T ss_dssp TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET--TEEEEEESSSSEEEEEEETTTE-EEE-EEEESS-BEEEEEEEE-
T ss_pred cCEEEEEEccCcccchhhheecceEEEEEEeccc--cEEEEEEcccCEEEEEEEccCCEEEE-EEecCCCccEEEEEEec
Confidence 4789999998877 3322222 233566665543 344444 445677665433 21222 22233456688888886
Q ss_pred CCCEEEEecCCCcEEEEeCCC--------C---eeEEeecccCcEEEE---EEcc--CCC------EEEEeeCCCcEE
Q 042260 89 DGNWMYSGSEDGTVKIWDLRA--------P---VCQMEYESRAAVNTV---VLHP--NQT------ELISGDQNGNIR 144 (174)
Q Consensus 89 ~~~~l~t~~~dg~v~iwd~~~--------~---~~~~~~~~~~~v~~~---~~~~--~~~------~l~s~~~d~~i~ 144 (174)
+++.++.+..+|.+.++.... . .....+..+..|+++ .+.| .+. .++.++.+|.|-
T Consensus 183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence 667999999999999988752 1 223445667778887 5555 222 377788899887
No 339
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.014 Score=47.05 Aligned_cols=126 Identities=13% Similarity=0.214 Sum_probs=77.8
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec------------CCcEEEEEcCCCCCCCeE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG------------NPHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~~~~~~ 72 (174)
|.+|+|-=.-| |.+|--++-..++.+. | ..|.-+.|+|..+++++-+ ...+.|||++++....
T Consensus 222 GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr-- 296 (698)
T KOG2314|consen 222 GTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR-- 296 (698)
T ss_pred ceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc--
Confidence 34454444443 7788544444455554 3 3488899999988887632 1469999999985433
Q ss_pred Eeec--CCCCEE-EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEE
Q 042260 73 SYDQ--HTNNVM-AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELIS 136 (174)
Q Consensus 73 ~~~~--~~~~v~-~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s 136 (174)
.+.. ....+. -..|+-+++++|--.. ..|.|++..+-...-... .-..|....|+|.++.||-
T Consensus 297 sF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 297 SFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred ceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 3333 222233 4468889998886555 478888876532221111 1356888888888887763
No 340
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.93 E-value=0.016 Score=50.51 Aligned_cols=120 Identities=12% Similarity=0.219 Sum_probs=78.8
Q ss_pred EEEEcCCCceEEEe-----cC-CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEec---CCCcEEEEeCCCC
Q 042260 40 RLEITPNKHYLAAA-----GN-PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGS---EDGTVKIWDLRAP 110 (174)
Q Consensus 40 ~~~~~~~~~~~~~~-----~d-~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~---~dg~v~iwd~~~~ 110 (174)
.+.|..+|.+++.+ .+ +.+++||-+ +..... .....+.-.+++|.|.|..+++-. +|+.|.++..+..
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~--se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST--SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc--cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence 47888899888764 24 689999986 322221 112234556788999999988853 4667888876532
Q ss_pred e---eEEeeccc-CcEEEEEEccCCCEEEE---eeCCCcEEEEeCCCCcceeecCcccc
Q 042260 111 V---CQMEYESR-AAVNTVVLHPNQTELIS---GDQNGNIRVWDLTANSCSCELGLQYG 162 (174)
Q Consensus 111 ~---~~~~~~~~-~~v~~~~~~~~~~~l~s---~~~d~~i~iwd~~~~~~~~~~~~~~~ 162 (174)
. -...+... .+|..++|+-++..|+. ......|++|=+.+-..-.+.++++.
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~ 335 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS 335 (1265)
T ss_pred cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc
Confidence 1 11112222 23899999999998887 44555699999998766555443333
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.90 E-value=0.033 Score=48.68 Aligned_cols=105 Identities=15% Similarity=0.324 Sum_probs=64.1
Q ss_pred CCcEEEEE-----eeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCceEEEe----cCCcEEEEEcCCCCC-CCe
Q 042260 3 QPSVILAT-----ASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHYLAAA----GNPHIRLFDVNSSSP-QPV 71 (174)
Q Consensus 3 ~~~~~l~s-----~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~-~~~ 71 (174)
.++.++|+ ...-+.++|||.+ |.. .....+ ...=..++|.|+|.++++- .+..|.++.-+.-.- ...
T Consensus 205 gDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~ 282 (1265)
T KOG1920|consen 205 GDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFV 282 (1265)
T ss_pred cCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccc
Confidence 35666666 3333889999977 432 222222 2223568999999888774 345688776532110 111
Q ss_pred EEeecCCCCEEEEEEeeCCCEEEE---ecCCCcEEEEeCCC
Q 042260 72 MSYDQHTNNVMAVGFQCDGNWMYS---GSEDGTVKIWDLRA 109 (174)
Q Consensus 72 ~~~~~~~~~v~~~~~~~~~~~l~t---~~~dg~v~iwd~~~ 109 (174)
..++....++..++|+.++..++. ......|++|-+..
T Consensus 283 l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 283 LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 222233344899999999998877 45555699998865
No 342
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.89 E-value=0.00043 Score=56.25 Aligned_cols=134 Identities=20% Similarity=0.315 Sum_probs=80.9
Q ss_pred CCCcEEEEECCCC--ceeEEeec---CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260 13 YDKTIKFWEAKSG--RCYRTIQY---PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 13 ~D~~v~vwd~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 86 (174)
.|..++|||+.++ .+..+... .......++|-.+.+++.+| ....+.++|++...... ....+.-+..+..
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---~svnTk~vqG~tV 203 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---SSVNTKYVQGITV 203 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---hhhhhhhccccee
Confidence 4677999998876 22222221 12234467777665655444 56689999997432111 1123345566666
Q ss_pred ee-CCCEEEEecCCCcEEEEeC-CC---CeeEEeec---ccCcEEEEEEccCCCEE-EEeeC-CCcEEEEeCCC
Q 042260 87 QC-DGNWMYSGSEDGTVKIWDL-RA---PVCQMEYE---SRAAVNTVVLHPNQTEL-ISGDQ-NGNIRVWDLTA 150 (174)
Q Consensus 87 ~~-~~~~l~t~~~dg~v~iwd~-~~---~~~~~~~~---~~~~v~~~~~~~~~~~l-~s~~~-d~~i~iwd~~~ 150 (174)
+| .++++++-. ||.+.+||. +. +..+.... ....+..+++.|..+-+ ++... .++|+++|+..
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 77 778877766 999999993 32 11111111 12348899999987654 44444 46899999984
No 343
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.79 E-value=0.086 Score=42.57 Aligned_cols=141 Identities=11% Similarity=0.143 Sum_probs=85.4
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC--------ceEEEecCCcEEEEEcCCCCCCCeEE-ee
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK--------HYLAAAGNPHIRLFDVNSSSPQPVMS-YD 75 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~d~~i~i~d~~~~~~~~~~~-~~ 75 (174)
+-++..|+....+.--|++.|+.+..+..++.. -+.+.|.. ..+++-++..+.--|.+..+.+.... ..
T Consensus 480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred ceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence 334455676677777889999999999887654 45666642 23555556655445655443221111 00
Q ss_pred --cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 76 --QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 76 --~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.......+.+-. ...+++.+|..|.||+||.-.-.. ......+..|--+....+|..+++.+.+ .+.+-|+.
T Consensus 558 dY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 558 DYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred hccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 011223333222 345899999999999999532211 1122346678888888899888766543 67777776
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.78 E-value=0.0028 Score=53.47 Aligned_cols=100 Identities=19% Similarity=0.361 Sum_probs=72.9
Q ss_pred cEEEEEee----CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 5 SVILATAS----YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 5 ~~~l~s~s----~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
..+++.++ ..|+|-|| .++|++-+.+..+ -.+.+++|+|...+++.++ -+.+.+|.-.+.+... ....|..
T Consensus 27 ePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht--v~~th~a 102 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT--VVETHPA 102 (1416)
T ss_pred CceeEEEEecCCCCceEEEE-ecCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCCceeee--eccCCCC
Confidence 34555554 45778888 5677765544433 2467799999877777664 5668888876553222 2346889
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLR 108 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~ 108 (174)
.+..+.|+++|+.+.|+..-|.+.+|...
T Consensus 103 ~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 103 PIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99999999999999999999999999864
No 345
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.0056 Score=52.68 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=55.0
Q ss_pred CCCEEEEecCCCcEEEEeCCCCeeE--EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 89 DGNWMYSGSEDGTVKIWDLRAPVCQ--MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 89 ~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.+..++.|++.|.+...|++.-... .......+|.+++|+.+|+.++.|-.+|-|.+||+.+++...-+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 4567899999999999888764321 12234678999999999999999999999999999997766544
No 346
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.76 E-value=0.16 Score=38.54 Aligned_cols=126 Identities=12% Similarity=0.172 Sum_probs=77.1
Q ss_pred CCCcEEEEECCCCceeEEeec----CCCCeEEEEEcCCCceEEEec---C---CcEEEEEcCCCCCCCeEE-----eecC
Q 042260 13 YDKTIKFWEAKSGRCYRTIQY----PDSQVNRLEITPNKHYLAAAG---N---PHIRLFDVNSSSPQPVMS-----YDQH 77 (174)
Q Consensus 13 ~D~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~---d---~~i~i~d~~~~~~~~~~~-----~~~~ 77 (174)
.+.++-+-|..+|+.+..... +...+..+++.+++..+.+.. + ..--+.-.+.++...... ...-
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL 215 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence 356677778888988777544 456799999999988776642 1 111222222222111111 1123
Q ss_pred CCCEEEEEEeeCCCEEEE-ecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC
Q 042260 78 TNNVMAVGFQCDGNWMYS-GSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t-~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 140 (174)
..-+-+++++.++.+++. +-..+.+.+||..+...+..... ..+..++..+++ ++++.+..
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 467889999999987754 55678999999998887654333 334555655555 55555543
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.023 Score=46.96 Aligned_cols=113 Identities=16% Similarity=0.275 Sum_probs=80.8
Q ss_pred CeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee---
Q 042260 37 QVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC--- 112 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~--- 112 (174)
.+.-.+++....+++ ++..|-+.+|.-..+.... .+..+..+.+.....+++..++|+|+..|.|-++.++....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 344445555556655 4466778999887765433 22333445666777888899999999999999998865221
Q ss_pred --EEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 113 --QMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 113 --~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.... .|+..|++++|++++..|.+|...|+|-.-.+..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111 2467899999999999999999999998877776
No 348
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.74 E-value=0.1 Score=43.28 Aligned_cols=149 Identities=16% Similarity=0.277 Sum_probs=85.3
Q ss_pred cEEEEEeeCCC------cEEEEECCCCceeEEeecCCCC-eEEEEEcCCCceEEEecC------CcEEEEEcCCCCCCCe
Q 042260 5 SVILATASYDK------TIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPNKHYLAAAGN------PHIRLFDVNSSSPQPV 71 (174)
Q Consensus 5 ~~~l~s~s~D~------~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~ 71 (174)
+.+++.||.++ ++..||..+++-......+..+ -.+++...+..++++|.+ ..+..||...+++...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 55778888884 6889998887543333222222 223444444344455545 2357888888877665
Q ss_pred EEeecCCCCEEEEEEeeCCCEEEEecCCCc-----EEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCC--
Q 042260 72 MSYDQHTNNVMAVGFQCDGNWMYSGSEDGT-----VKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNG-- 141 (174)
Q Consensus 72 ~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~-----v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~-- 141 (174)
..+...+...... .-+|...|.|+.||. +..||.++.+....-.. +.......+ ++...+.||.++
T Consensus 365 a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 365 APMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSS 440 (571)
T ss_pred CCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCc
Confidence 4444333332222 236778888888864 66777766543322212 122222232 677778887554
Q ss_pred ----cEEEEeCCCCcceeec
Q 042260 142 ----NIRVWDLTANSCSCEL 157 (174)
Q Consensus 142 ----~i~iwd~~~~~~~~~~ 157 (174)
++..||..+..+...-
T Consensus 441 ~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred cccceEEEEcCCCCceeecC
Confidence 4788999888766443
No 349
>PHA02713 hypothetical protein; Provisional
Probab=96.73 E-value=0.041 Score=45.43 Aligned_cols=145 Identities=8% Similarity=0.032 Sum_probs=75.8
Q ss_pred CcEEEEEeeCCC-----cEEEEECCCCceeE--EeecCCCCeEEEEEcCCCceEEEec-C--------------------
Q 042260 4 PSVILATASYDK-----TIKFWEAKSGRCYR--TIQYPDSQVNRLEITPNKHYLAAAG-N-------------------- 55 (174)
Q Consensus 4 ~~~~l~s~s~D~-----~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~-d-------------------- 55 (174)
++.+.+.||.++ ++..||..+++-.. ...........+.. ++.+.+.|+ +
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 356777888764 47889987654221 11111111112222 445444332 2
Q ss_pred ---CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC------CcEEEEeCCC-CeeEEeecc---cCcE
Q 042260 56 ---PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED------GTVKIWDLRA-PVCQMEYES---RAAV 122 (174)
Q Consensus 56 ---~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d------g~v~iwd~~~-~~~~~~~~~---~~~v 122 (174)
..+..||..++++..+..+...+.... +..-+++..+.|+.+ ..+..||..+ ......... ....
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~--~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPG--VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCc--EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 236678887776654433322222222 223356666767654 2467888886 343322111 1223
Q ss_pred EEEEEccCCCEEEEeeCCC--cEEEEeCCCCcce
Q 042260 123 NTVVLHPNQTELISGDQNG--NIRVWDLTANSCS 154 (174)
Q Consensus 123 ~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~ 154 (174)
...++ ++...+.|+.|+ .+-.||+.+.+..
T Consensus 507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 33333 667778888888 6778888876544
No 350
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.71 E-value=0.17 Score=41.11 Aligned_cols=147 Identities=11% Similarity=0.160 Sum_probs=85.0
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCCC------C-e-EEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPDS------Q-V-NRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~------~-v-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+..++.|+.|.-.|.++|+.+-.+..... . + ..+.....+.++++..++.+.-+|.++++. +-..+....
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~--~W~~~~~~~ 141 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQ--VWKFGNNDQ 141 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCE--eeeecCCCC
Confidence 55677789999999999988766543321 0 1 111222225566666788888899887743 211111111
Q ss_pred -----CEE-EEEEeeCCCEEEEec---------CCCcEEEEeCCCCeeEEeecccC---------------------cE-
Q 042260 80 -----NVM-AVGFQCDGNWMYSGS---------EDGTVKIWDLRAPVCQMEYESRA---------------------AV- 122 (174)
Q Consensus 80 -----~v~-~~~~~~~~~~l~t~~---------~dg~v~iwd~~~~~~~~~~~~~~---------------------~v- 122 (174)
.+. ...+. + ..++.++ .++.+.-.|..+.+....+.... .+
T Consensus 142 ~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 142 VPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred cCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 011 11111 2 3344443 36788888988877665543311 01
Q ss_pred EEEEEccCCCEEEEeeCCC------------------cEEEEeCCCCcceeecC
Q 042260 123 NTVVLHPNQTELISGDQNG------------------NIRVWDLTANSCSCELG 158 (174)
Q Consensus 123 ~~~~~~~~~~~l~s~~~d~------------------~i~iwd~~~~~~~~~~~ 158 (174)
...++.+.+..|+.++.|+ .|.-.|.++++..++..
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 1345555667787777665 68889999998887753
No 351
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.65 E-value=0.12 Score=38.41 Aligned_cols=111 Identities=14% Similarity=0.272 Sum_probs=69.9
Q ss_pred EEEeeCCCcEEEEEC--C---CCceeEEeec---CCCCeEEEEEcCCCceEEEec------------CCcEEEEEcCCCC
Q 042260 8 LATASYDKTIKFWEA--K---SGRCYRTIQY---PDSQVNRLEITPNKHYLAAAG------------NPHIRLFDVNSSS 67 (174)
Q Consensus 8 l~s~s~D~~v~vwd~--~---~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~ 67 (174)
|+.-.++|.++=|-+ . ..+..+++.. ....|.++.++|...++..++ +..+..|-+.++.
T Consensus 112 Llvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 112 LLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS 191 (282)
T ss_pred EEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC
Confidence 445566777766654 2 2344555543 245799999999865554432 1245566553322
Q ss_pred CCC------------------------eEEe---ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc
Q 042260 68 PQP------------------------VMSY---DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES 118 (174)
Q Consensus 68 ~~~------------------------~~~~---~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~ 118 (174)
+-. ...+ ......|..+..+|+|+.+|+...+|.|.+|++.+...+..+..
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 100 0001 12346688899999999999999999999999988766655543
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.64 E-value=0.17 Score=37.51 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=82.7
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEE----------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMS---------- 73 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------- 73 (174)
.+..|+.|..+| +.+++.........+. +...|..+..-+.-..+..-.|+.+.++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence 355677888888 9999983333222222 2223888888776555555557999999986532221100
Q ss_pred --eecCCCCEEEEE--EeeCCCEEEEecCCCcEEEEeCCCC-----eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260 74 --YDQHTNNVMAVG--FQCDGNWMYSGSEDGTVKIWDLRAP-----VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIR 144 (174)
Q Consensus 74 --~~~~~~~v~~~~--~~~~~~~l~t~~~dg~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 144 (174)
.-.....+...+ -...+...........+.+|..... ....++.....+.+++|. ++.++.|..+ ...
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~ 160 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFY 160 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceE
Confidence 001122333333 1122333333344448888886542 344556667889999997 5667666654 478
Q ss_pred EEeCCCC
Q 042260 145 VWDLTAN 151 (174)
Q Consensus 145 iwd~~~~ 151 (174)
+.|++++
T Consensus 161 ~idl~~~ 167 (275)
T PF00780_consen 161 LIDLNTG 167 (275)
T ss_pred EEecCCC
Confidence 8888854
No 353
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.037 Score=44.75 Aligned_cols=112 Identities=14% Similarity=0.258 Sum_probs=73.4
Q ss_pred CeEEEEEcCCCceEEE-ec---CCcEEEEEcCCCC--CCCeEEeecCCCCEEEEEEeeCCCEEEEe---cCCCcEEEEeC
Q 042260 37 QVNRLEITPNKHYLAA-AG---NPHIRLFDVNSSS--PQPVMSYDQHTNNVMAVGFQCDGNWMYSG---SEDGTVKIWDL 107 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~~-~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~t~---~~dg~v~iwd~ 107 (174)
.|...+|-|.|.-++. ++ ...+.+|-+++.. +..+..+ .......+-|+|.|++++.+ |..|.+.++|+
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--cccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 4667888897764443 33 2357888887432 2223323 23567788999999998775 56789999998
Q ss_pred CCCeeEEe-ecccCcEEEEEEccCCCEEEEeeCC------CcEEEEeCCC
Q 042260 108 RAPVCQME-YESRAAVNTVVLHPNQTELISGDQN------GNIRVWDLTA 150 (174)
Q Consensus 108 ~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~ 150 (174)
....+..+ ...+...+.+.|.|.|+++.++++- ..-+||++.-
T Consensus 525 ~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 525 DYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred chhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 75333222 2234557889999999999987643 3356777653
No 354
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.58 E-value=0.16 Score=42.23 Aligned_cols=95 Identities=17% Similarity=0.319 Sum_probs=65.4
Q ss_pred CCcEEEEECCC-----CceeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCC------CC---eEEeecC
Q 042260 14 DKTIKFWEAKS-----GRCYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSP------QP---VMSYDQH 77 (174)
Q Consensus 14 D~~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~------~~---~~~~~~~ 77 (174)
+.+|.+.|.++ .+....+... .....+.++|++++++.+ .+..+.+.|+...+. .+ +..-..-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 56799999887 3455555543 457899999999987665 477899999875321 11 1110011
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~ 109 (174)
...-...+|.++|+...|---|..|-.||+..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 23345678888888888888899999999875
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.53 E-value=0.1 Score=41.63 Aligned_cols=133 Identities=16% Similarity=0.280 Sum_probs=77.1
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE--ecCC--cEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA--AGNP--HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG 90 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 90 (174)
..+.++|+++++........ ..-..-.|+|++..++- ..|+ .|.+.|+....... +..-.+.-..-.|+|+|
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCCCC
Confidence 45888888887765554422 22334578998876543 2344 47777887765332 22222333366789999
Q ss_pred CEEEEecC-CCcEEE--EeCCCCee-EEeecccCcEEEEEEccCCCEEEEeeC-CCc--EEEEeCCCCc
Q 042260 91 NWMYSGSE-DGTVKI--WDLRAPVC-QMEYESRAAVNTVVLHPNQTELISGDQ-NGN--IRVWDLTANS 152 (174)
Q Consensus 91 ~~l~t~~~-dg~v~i--wd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~ 152 (174)
+.++-.+. .|.-.| .|+..... ..++..... ..-.++|++..++..+. +|. |.+.|+.++.
T Consensus 294 ~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 294 SKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 98776644 455444 44544332 223333222 26678999998876553 344 6777776554
No 356
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=0.0026 Score=53.87 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=86.7
Q ss_pred eeEEeecCCCCeEEEEEcCCC-ceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCC--cEE
Q 042260 27 CYRTIQYPDSQVNRLEITPNK-HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--TVK 103 (174)
Q Consensus 27 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--~v~ 103 (174)
.+.++..+....++++|+... .+++++-.|.++++...++... ..+++|...++-+.-+.+|....+.+.-. ...
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--ccccccccccccccccCCcceeeeeccccCchHH
Confidence 455566667778899999754 4555667899999999888543 34679999999999888888777655433 578
Q ss_pred EEeCCCC-eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 104 IWDLRAP-VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 104 iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
+|++.+- ...+.| ..-.++.|+.....=+.|+......+||+++++...+
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 8998751 111222 2345566766544445566656799999999876655
No 357
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.45 E-value=0.28 Score=39.83 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=77.7
Q ss_pred cEEEEECCCCceeEEeecCCCCeEE---------EEEc-CCC----ceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 16 TIKFWEAKSGRCYRTIQYPDSQVNR---------LEIT-PNK----HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~~~~v~~---------~~~~-~~~----~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+|.-.|.++|+.+-.++........ .... -++ .+++++.++.+...|.++++.. -..... .
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~--W~~~~~---~ 331 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI--SARPEV---E 331 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe--eEeEee---c
Confidence 7999999999987665422111110 0000 112 1334456778888888887432 111100 0
Q ss_pred EEEEEeeCCCEEEEe------------------cCCCcEEEEeCCCCeeEEeeccc---------CcE--EEEEEccCCC
Q 042260 82 MAVGFQCDGNWMYSG------------------SEDGTVKIWDLRAPVCQMEYESR---------AAV--NTVVLHPNQT 132 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~------------------~~dg~v~iwd~~~~~~~~~~~~~---------~~v--~~~~~~~~~~ 132 (174)
..++..+ ..++.+ ..+|.+.-.|+++.+.+...... .+. ..++. .+.
T Consensus 332 ~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~ 407 (488)
T cd00216 332 QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN 407 (488)
T ss_pred cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCC
Confidence 1112222 222221 23567777888777766554332 111 12222 557
Q ss_pred EEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260 133 ELISGDQNGNIRVWDLTANSCSCELGLQYGL 163 (174)
Q Consensus 133 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 163 (174)
.|+.++.||.+.-+|.++++...+.+++...
T Consensus 408 ~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~ 438 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGKELWKFRTPSGI 438 (488)
T ss_pred eEEEECCCCeEEEEECCCCceeeEEECCCCc
Confidence 7888999999999999999999887665544
No 358
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.43 E-value=0.27 Score=37.37 Aligned_cols=141 Identities=8% Similarity=0.131 Sum_probs=68.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC--CCCC-eEEeecCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS--SPQP-VMSYDQHTN 79 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~-~~~~~~~~~ 79 (174)
.++.+++.++.-....-||.....-..--+....+|..+.|.|++.+...+..+.++.=+.... .... .........
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCce
Confidence 3566666666555556676443222222223456799999999988877777777877662111 1110 110111224
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee----cccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQTELISGDQNGNIRVW 146 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 146 (174)
.+..++|.+++...+.|+....++ .....+.-... ........+.|.+..+-++. +++|.+.-|
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G~l~~--S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSGTLLV--STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT-EEE--ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred eeEEEEecCCCCEEEEeCCccEEE--eCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 489999998887777776654333 33333221111 12455788888765554444 578877665
No 359
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.30 E-value=0.41 Score=38.12 Aligned_cols=149 Identities=8% Similarity=0.127 Sum_probs=67.7
Q ss_pred CcEEEEEeeC--C----CcEEEEECCCCceeEEeecCC---CCeEEEEEcCCCceEEEec--------------------
Q 042260 4 PSVILATASY--D----KTIKFWEAKSGRCYRTIQYPD---SQVNRLEITPNKHYLAAAG-------------------- 54 (174)
Q Consensus 4 ~~~~l~s~s~--D----~~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~-------------------- 54 (174)
++.+++|+-. + |-+.+.|-++.+......... ..-.+..+.|....+++++
T Consensus 140 ~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~ 219 (461)
T PF05694_consen 140 DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGK 219 (461)
T ss_dssp S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-
T ss_pred CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhccc
Confidence 3556666433 2 237788877777666655422 2235677888655555543
Q ss_pred -CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC--E-EEEecCCCcEEEE-eCCCCe----eEEeecc-------
Q 042260 55 -NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN--W-MYSGSEDGTVKIW-DLRAPV----CQMEYES------- 118 (174)
Q Consensus 55 -d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-l~t~~~dg~v~iw-d~~~~~----~~~~~~~------- 118 (174)
...+.+||+.+.+......+.....-.+.+.|..+.. + |+.+.-.+.|-.| .-.... .+.++..
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 4578999998764333332222222355666654322 2 3333333333333 222221 1111111
Q ss_pred -----------cCcEEEEEEccCCCEEEEeeC-CCcEEEEeCCCCc
Q 042260 119 -----------RAAVNTVVLHPNQTELISGDQ-NGNIRVWDLTANS 152 (174)
Q Consensus 119 -----------~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~ 152 (174)
+.-|++|.++.++++|..... +|.||.||+..+.
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 234799999999999987664 8999999999754
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.29 E-value=0.3 Score=36.28 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=82.2
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec-CCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ-HTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~v~~ 83 (174)
+.+++-||..+.++--|.++|+..-.... ..++.+-+.--.+..+.+...+.+.+.+..+++. .-.+.. ..-++ .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~--~w~f~~~~~vk~-~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQ--IWNFVILETVKV-R 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEEECCEEEEEEccCcEEEEEecchhh--eeeeeehhhhcc-c
Confidence 46788899999999999999987544322 2234332222123345566788899888887732 111111 11122 2
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE-EEEEEccCCCEEEEeeCCCcE
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV-NTVVLHPNQTELISGDQNGNI 143 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~d~~i 143 (174)
.....++..|..|+.|+....-|.++..++...+-+..+ .+-+++|-...|..+...|.+
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 234568899999999999999999998888765433322 334455533334444444443
No 361
>PHA02713 hypothetical protein; Provisional
Probab=96.28 E-value=0.27 Score=40.72 Aligned_cols=148 Identities=9% Similarity=0.063 Sum_probs=72.6
Q ss_pred CcEEEEEeeCC------CcEEEEECCCCceeEEeecCCCCeE-EEEEcCCCceEE-EecC-----CcEEEEEcCCCCCCC
Q 042260 4 PSVILATASYD------KTIKFWEAKSGRCYRTIQYPDSQVN-RLEITPNKHYLA-AAGN-----PHIRLFDVNSSSPQP 70 (174)
Q Consensus 4 ~~~~l~s~s~D------~~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~-~~~d-----~~i~i~d~~~~~~~~ 70 (174)
.+.+.+.||.+ .++..||..++.-...-..+..... +++.. ++++.+ +|.+ ..+..||..++++..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 35667777764 3477888776643211111111111 22222 445444 4433 237789988776654
Q ss_pred eEEeecCCCCEEEEEEeeCCCEEEEecCCC-----------------------cEEEEeCCCCeeEEeeccc-CcEEEEE
Q 042260 71 VMSYDQHTNNVMAVGFQCDGNWMYSGSEDG-----------------------TVKIWDLRAPVCQMEYESR-AAVNTVV 126 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg-----------------------~v~iwd~~~~~~~~~~~~~-~~v~~~~ 126 (174)
...++........+ .-+++..+.|+.++ .+..||.++......-... ......+
T Consensus 382 ~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 382 LPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 43333322222222 23577777777653 4677887765443221111 1111111
Q ss_pred EccCCCEEEEeeCC------CcEEEEeCCC-Ccce
Q 042260 127 LHPNQTELISGDQN------GNIRVWDLTA-NSCS 154 (174)
Q Consensus 127 ~~~~~~~l~s~~~d------~~i~iwd~~~-~~~~ 154 (174)
..-++...+.|+.+ ..+..||.++ .+..
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 22245655666654 2367899887 5654
No 362
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.025 Score=48.93 Aligned_cols=96 Identities=25% Similarity=0.507 Sum_probs=61.7
Q ss_pred EEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEE--
Q 042260 51 AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVL-- 127 (174)
Q Consensus 51 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~-- 127 (174)
++++.+++-..|...+ ..+...-..-.++|.+++|+.+|+.++.|-.+|.|.+||+........+ .+..+...+.+
T Consensus 104 i~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~ 182 (1206)
T KOG2079|consen 104 IGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVG 182 (1206)
T ss_pred EEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEE
Confidence 3345567777777553 2222222334688999999999999999999999999999886655444 23334333333
Q ss_pred -ccCCCEEEEeeCCCcEEEEeCC
Q 042260 128 -HPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 128 -~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
..+...++++...|. +|+..
T Consensus 183 ~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 183 RTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EeCCCcEEEEccCCCc--eEEEE
Confidence 233345777766664 55443
No 363
>PHA03098 kelch-like protein; Provisional
Probab=96.08 E-value=0.43 Score=39.13 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=71.3
Q ss_pred cEEEEEeeCC-----CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEEec---C----CcEEEEEcCCCCCCCe
Q 042260 5 SVILATASYD-----KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAAAG---N----PHIRLFDVNSSSPQPV 71 (174)
Q Consensus 5 ~~~l~s~s~D-----~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~---d----~~i~i~d~~~~~~~~~ 71 (174)
+.+.+.||.+ .++..||..+++-...-..+.... .+++.. ++.+.+.++ + ..+..||..++++...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 5566777765 346778876654321111111111 112222 344444333 1 3477888877665543
Q ss_pred EEeecCCCCEEEEEEeeCCCEEEEecCCC--------cEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC
Q 042260 72 MSYDQHTNNVMAVGFQCDGNWMYSGSEDG--------TVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 72 ~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--------~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d 140 (174)
...+........ ...+++.++.|+.+. .+.+||..+......-.. +.....+.+ ++..++.|+.+
T Consensus 422 ~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPISHYGGCA--IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK 497 (534)
T ss_pred CCCCccccCceE--EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence 322222222222 223566666666432 388888876544322111 111122222 56666777654
Q ss_pred -----CcEEEEeCCCCcce
Q 042260 141 -----GNIRVWDLTANSCS 154 (174)
Q Consensus 141 -----~~i~iwd~~~~~~~ 154 (174)
..+..||.++.+..
T Consensus 498 ~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 498 YEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCcccceeEEEeCCCCEEE
Confidence 46888998877654
No 364
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.05 E-value=0.11 Score=37.64 Aligned_cols=66 Identities=15% Similarity=0.416 Sum_probs=49.5
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCCeeEEee---------------cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY---------------ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
...++.++..-..+|.+++||+++.++.... .....|..+.+..+|..|++-+ +|....||..=
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3456888999999999999999987654332 2345688889988888777654 57788888875
Q ss_pred Cc
Q 042260 151 NS 152 (174)
Q Consensus 151 ~~ 152 (174)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 54
No 365
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.95 E-value=0.45 Score=35.26 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=79.9
Q ss_pred EeeCCCcEEEEECCCC-----ceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCC------
Q 042260 10 TASYDKTIKFWEAKSG-----RCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT------ 78 (174)
Q Consensus 10 s~s~D~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------ 78 (174)
.....++|.+|..... +...++..+ ..+..+.|.++ .++.+..+...+.|+.++....+.......
T Consensus 109 ~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~~~--~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~ 185 (275)
T PF00780_consen 109 CVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFLGN--KICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSR 185 (275)
T ss_pred EEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEeCC--EEEEEeCCceEEEecCCCCceEEeCccCCcchhhhc
Confidence 3444558999987653 355666555 46888888733 344343556788888866544433221111
Q ss_pred ----CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 79 ----NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 79 ----~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
.++..... +++.+++.- |..-.+-|....... ..+.-...+.++++ ..++|++.+.+ .|.+|++.+++.
T Consensus 186 ~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~l 259 (275)
T PF00780_consen 186 NSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGEL 259 (275)
T ss_pred ccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECCC-EEEEEECcCCcE
Confidence 12222222 234555532 333333444332211 23333446667777 45788877665 599999999999
Q ss_pred eeecCcc
Q 042260 154 SCELGLQ 160 (174)
Q Consensus 154 ~~~~~~~ 160 (174)
.+.+..+
T Consensus 260 vQ~i~~~ 266 (275)
T PF00780_consen 260 VQTIPLP 266 (275)
T ss_pred EEEEECC
Confidence 8887743
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.91 E-value=0.035 Score=29.81 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=28.6
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~ 109 (174)
...|..+.|+|...++|.+..+|.|.++.+..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45688999999999999999999999998853
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.90 E-value=0.43 Score=39.66 Aligned_cols=149 Identities=15% Similarity=0.226 Sum_probs=81.5
Q ss_pred CcEEEEEeeCCCc-----EEEEECCCCcee--EEeecCCCCeEEEEEcCCCceEEEec-C------CcEEEEEcCCCCCC
Q 042260 4 PSVILATASYDKT-----IKFWEAKSGRCY--RTIQYPDSQVNRLEITPNKHYLAAAG-N------PHIRLFDVNSSSPQ 69 (174)
Q Consensus 4 ~~~~l~s~s~D~~-----v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~-d------~~i~i~d~~~~~~~ 69 (174)
.+.+.|.||.||. +-.||.++.+-- ............+.+ .+.+.+.++ + ..+..||..++.+.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 3567888999875 666776654422 111111111222222 455544433 2 34678998888776
Q ss_pred CeEEeecCCCCEEEEEEeeCCCEEEEecCCCc-----EEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCC
Q 042260 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT-----VKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNG 141 (174)
Q Consensus 70 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~-----v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~ 141 (174)
....+...+.... ++ .-++...+.|+.|+. |..+|.++.+....-... ..+...+. ++...+.|+.||
T Consensus 458 ~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDG 533 (571)
T ss_pred ecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccC
Confidence 6555443333333 22 235677777877763 777888765544332221 22222222 456667788776
Q ss_pred c-----EEEEeCCCCcceeecC
Q 042260 142 N-----IRVWDLTANSCSCELG 158 (174)
Q Consensus 142 ~-----i~iwd~~~~~~~~~~~ 158 (174)
. |..||..+.......+
T Consensus 534 ~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 534 NNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccccceeEEcCCCCCceeeCCC
Confidence 4 7788888776554433
No 368
>PHA02790 Kelch-like protein; Provisional
Probab=95.86 E-value=0.58 Score=38.00 Aligned_cols=143 Identities=10% Similarity=0.034 Sum_probs=71.1
Q ss_pred cEEEEEeeCCC-----cEEEEECCCCceeEE--eecCCCCeEEEEEcCCCceEEEec-C--CcEEEEEcCCCCCCCeEEe
Q 042260 5 SVILATASYDK-----TIKFWEAKSGRCYRT--IQYPDSQVNRLEITPNKHYLAAAG-N--PHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 5 ~~~l~s~s~D~-----~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~-d--~~i~i~d~~~~~~~~~~~~ 74 (174)
+.+++.||.++ ++..||..+++.... ...+......+. -++.+.+.|+ + ..+..||...+++.....+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 45677787653 477788877553221 111111112222 2455544443 2 3477888766655433333
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCC---cEEEEeCCCCeeEEeecccCcE-EEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDG---TVKIWDLRAPVCQMEYESRAAV-NTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg---~v~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
...+..... ...+|+..+.|+.++ .+..||.++...........+. ...+...++...+.|+ .+..||.++
T Consensus 350 ~~~r~~~~~--~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAV--ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCcccEE--EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCC
Confidence 322222222 234677777777553 4778888765543321111111 1111223555555563 467888877
Q ss_pred Ccce
Q 042260 151 NSCS 154 (174)
Q Consensus 151 ~~~~ 154 (174)
.+..
T Consensus 425 ~~W~ 428 (480)
T PHA02790 425 NTWT 428 (480)
T ss_pred CcEe
Confidence 6544
No 369
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.86 E-value=0.71 Score=39.40 Aligned_cols=96 Identities=13% Similarity=0.265 Sum_probs=49.7
Q ss_pred CeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260 37 QVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY 116 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~ 116 (174)
.|..+..+++|.+++-.+...+.+-.+... +.....++.-...+.|=.+ +-+..+. ..
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r-~g~~~~~~~g~~~i~Crt~-~v~~~~~--------------------~~ 143 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRR-WGKNGEFEDGKKEINCRTV-PVDERFF--------------------TS 143 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccc-cCccccccCCCcceeEEEE-Eechhhc--------------------cC
Confidence 466777888888877777777777666321 0000001111111211111 1011111 11
Q ss_pred cccCcEEEEEEccC---CCEEEEeeCCCcEEEEeCCCCcce
Q 042260 117 ESRAAVNTVVLHPN---QTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 117 ~~~~~v~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
.....|..+.|||. +..|+.-++|+++|+||+......
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCC
Confidence 12345667777775 367777777888888888755443
No 370
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.86 E-value=0.5 Score=35.12 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=70.6
Q ss_pred ceEE-EecCCcEEEEEcCCCCCCCeEEeecC-CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE-EE
Q 042260 48 HYLA-AAGNPHIRLFDVNSSSPQPVMSYDQH-TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV-NT 124 (174)
Q Consensus 48 ~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v-~~ 124 (174)
.+++ ++..+.+.--|..+++.. ++.. ..++.+-+.. -|++++-|+..|.+.+-+.+++.....+..-..| ..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~----We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLI----WEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEE----eehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 3443 344566677777666321 2211 1233333333 4788999999999999999987554444333333 23
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 125 VVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
..+.+++..+..|+.|++...-|.++..|+++.
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 355778999999999999999999999999884
No 371
>PHA02790 Kelch-like protein; Provisional
Probab=95.84 E-value=0.62 Score=37.80 Aligned_cols=142 Identities=10% Similarity=0.068 Sum_probs=71.0
Q ss_pred CcEEEEEeeCC--CcEEEEECCCCceeEEeecCCCCeE-EEEEcCCCceEEE-ecC---CcEEEEEcCCCCCCCeEEeec
Q 042260 4 PSVILATASYD--KTIKFWEAKSGRCYRTIQYPDSQVN-RLEITPNKHYLAA-AGN---PHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s~D--~~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~-~~d---~~i~i~d~~~~~~~~~~~~~~ 76 (174)
++.+.+.||.+ .++..||..+++-...-..+..... +++. -++.+.+. |.+ ..+..||.+++.+.....+..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 35667778764 3577888765533221111111111 1222 24454443 322 346778887766544332222
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC-----CcEEEEeC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN-----GNIRVWDL 148 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d-----~~i~iwd~ 148 (174)
.+.....+ .-+++..+.|+ .+.++|.++......-.. +.....+++ ++...+.||.+ ..+..||.
T Consensus 397 ~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 397 PHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred ccccceEE--EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEEC
Confidence 22222222 23566666663 577888876554322211 122233333 56677777754 35778888
Q ss_pred CCCcc
Q 042260 149 TANSC 153 (174)
Q Consensus 149 ~~~~~ 153 (174)
++.+.
T Consensus 470 ~~~~W 474 (480)
T PHA02790 470 RTYSW 474 (480)
T ss_pred CCCeE
Confidence 77654
No 372
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.74 E-value=0.33 Score=32.17 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=54.4
Q ss_pred CEEEEecCCCcEEEEeCCCCe--------eEEeecccCcEEEEEEcc---C--CCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 91 NWMYSGSEDGTVKIWDLRAPV--------CQMEYESRAAVNTVVLHP---N--QTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 91 ~~l~t~~~dg~v~iwd~~~~~--------~~~~~~~~~~v~~~~~~~---~--~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
-.|+.++..|.|.|++..... .+..+.....|.+++--+ + ...|+.|+ ...+..||+...+..+.-
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYK 89 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhh
Confidence 356667777888888765321 223344556677775543 2 23455555 457999999999999888
Q ss_pred CcccceeEEEEEe
Q 042260 158 GLQYGLRTFLFYH 170 (174)
Q Consensus 158 ~~~~~~~~~~~~~ 170 (174)
+.+.++++.++..
T Consensus 90 e~~DGvn~i~~g~ 102 (136)
T PF14781_consen 90 EVPDGVNAIVIGK 102 (136)
T ss_pred hCccceeEEEEEe
Confidence 8899999998864
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.73 E-value=0.042 Score=39.62 Aligned_cols=101 Identities=11% Similarity=0.139 Sum_probs=58.8
Q ss_pred EEEEeeCCCcEEEEECCCC-ceeEEeecCCCCeEE-EEEcCCC-ceEEEecCCcEEEEEcCCCCCCCeEEeecCC-CCEE
Q 042260 7 ILATASYDKTIKFWEAKSG-RCYRTIQYPDSQVNR-LEITPNK-HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT-NNVM 82 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~-~~~~~~~~~~~~v~~-~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~v~ 82 (174)
-++.|+.||.|.+|...-. +....+..-...+.. +..-.++ ...++++++.+|.|.+...+..... ..|. ....
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~--g~h~~~~~e 149 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV--GQHNFESGE 149 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee--ccccCCCcc
Confidence 4778999999999987622 111111111222322 2222222 3345567888999988665432222 2344 4555
Q ss_pred EEEEeeCCCEEEEe--cCCCcEEEEeCCC
Q 042260 83 AVGFQCDGNWMYSG--SEDGTVKIWDLRA 109 (174)
Q Consensus 83 ~~~~~~~~~~l~t~--~~dg~v~iwd~~~ 109 (174)
....+..+++++.. |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55556667777777 7888888888764
No 374
>PHA03098 kelch-like protein; Provisional
Probab=95.66 E-value=0.76 Score=37.68 Aligned_cols=146 Identities=10% Similarity=0.041 Sum_probs=70.5
Q ss_pred cEEEEEeeCCC------cEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEE-EecC-----CcEEEEEcCCCCCCCe
Q 042260 5 SVILATASYDK------TIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLA-AAGN-----PHIRLFDVNSSSPQPV 71 (174)
Q Consensus 5 ~~~l~s~s~D~------~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~-~~~d-----~~i~i~d~~~~~~~~~ 71 (174)
+.+++.||.++ .+..||..+++-...-..+.... .+++.. ++.+.+ +|.+ ..+..||..++++...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 45667777653 46778877655422111111111 122222 344444 4432 2366788877665443
Q ss_pred EEeecCCCCEEEEEEeeCCCEEEEecCC------CcEEEEeCCCCeeEEeecccC--cEEEEEEccCCCEEEEeeCCC--
Q 042260 72 MSYDQHTNNVMAVGFQCDGNWMYSGSED------GTVKIWDLRAPVCQMEYESRA--AVNTVVLHPNQTELISGDQNG-- 141 (174)
Q Consensus 72 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~-- 141 (174)
..++..+.....+ ..+++..+.|+.+ ..+..||..+.........+. .-.+.+ ..++...+.||.+.
T Consensus 374 ~~lp~~r~~~~~~--~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 374 PPLIFPRYNPCVV--NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYID 450 (534)
T ss_pred CCcCcCCccceEE--EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCCC
Confidence 3332222222222 2356777777632 357888887654332211111 111222 23555666666432
Q ss_pred ------cEEEEeCCCCcce
Q 042260 142 ------NIRVWDLTANSCS 154 (174)
Q Consensus 142 ------~i~iwd~~~~~~~ 154 (174)
.+..||..+.+..
T Consensus 451 ~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CCcccceEEEecCCCCcee
Confidence 3888998877644
No 375
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.56 E-value=0.6 Score=38.43 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=45.8
Q ss_pred CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260 99 DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL 163 (174)
Q Consensus 99 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 163 (174)
-|.+.-+|+.+.+.........+...-.+.-.+..++.++.||.++.+|.++++.+++.++....
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~ 504 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGI 504 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCc
Confidence 46788899998887766554333211112224567778888999999999999999988766544
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.44 E-value=0.27 Score=42.17 Aligned_cols=96 Identities=10% Similarity=0.187 Sum_probs=66.4
Q ss_pred EEeeCCCcEEEEECCCCc--eeEEee---cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 9 ATASYDKTIKFWEAKSGR--CYRTIQ---YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 9 ~s~s~D~~v~vwd~~~~~--~~~~~~---~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+.|-.+..+.-||.+-.. .+.... .......+++-+.+|.+++++.+|.||+||-... .....+++-..+|.+
T Consensus 546 flGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~--~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 546 FLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGK--RAKTALPGLGDPIIG 623 (794)
T ss_pred EEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccch--hhhhcCCCCCCCeeE
Confidence 356667789999977532 232111 1234567888888899999999999999995321 222234555689999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDL 107 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~ 107 (174)
+..+.+|+++++.+.. .+.+.+.
T Consensus 624 iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEeecc-eEEEEEE
Confidence 9999999998887765 5666663
No 377
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.44 E-value=1.2 Score=37.44 Aligned_cols=105 Identities=10% Similarity=0.161 Sum_probs=67.8
Q ss_pred cCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEe--eCCCEEEEecCCCcEEEEeCC-------CC--e
Q 042260 44 TPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQ--CDGNWMYSGSEDGTVKIWDLR-------AP--V 111 (174)
Q Consensus 44 ~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~t~~~dg~v~iwd~~-------~~--~ 111 (174)
+..++..+.. ....+.|||.+.+.......+ ...+.|.++.|. +++..+.+.+-.+.|.++--. .+ .
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 3344443333 345699999987643322233 235789999986 588899999999999998631 11 1
Q ss_pred eEEee----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 112 CQMEY----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 112 ~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.+..+ ..+.+|.+..|.++|..++..+ ..+.++|-.-.
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~~~ 158 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKWLD 158 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCCcC
Confidence 22222 2346899999999998776543 46888876544
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.27 E-value=0.97 Score=34.52 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=65.8
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCceEEEecC--CcEEEEEcCC--C---CCCCeEEeecCCCCEEEEEEeeCCCEEEEe
Q 042260 24 SGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN--PHIRLFDVNS--S---SPQPVMSYDQHTNNVMAVGFQCDGNWMYSG 96 (174)
Q Consensus 24 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d--~~i~i~d~~~--~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~ 96 (174)
.+..++-+..+-..-++++|+|+++.+..+.. +.+.-|++.. . ............+..-.++...+|++-+++
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA 230 (307)
T ss_pred CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence 34444444433344578999999977666543 5566666542 1 111122222334556667777788877554
Q ss_pred cCCC-cEEEEeCCCCeeEEeeccc-CcEEEEEEc-cCCCEEEE
Q 042260 97 SEDG-TVKIWDLRAPVCQMEYESR-AAVNTVVLH-PNQTELIS 136 (174)
Q Consensus 97 ~~dg-~v~iwd~~~~~~~~~~~~~-~~v~~~~~~-~~~~~l~s 136 (174)
-.+| .|..|+.. .+....+..+ ..+.+++|- |+.+.|+.
T Consensus 231 ~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 231 VWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 4444 99999998 5555555554 667777774 34455543
No 379
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=1 Score=38.10 Aligned_cols=142 Identities=12% Similarity=0.252 Sum_probs=85.3
Q ss_pred cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCe-EEeecCCCCEEEEEEeeCCCEEE
Q 042260 16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPV-MSYDQHTNNVMAVGFQCDGNWMY 94 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~ 94 (174)
.|+||+.. |+.+..+.-....+-.+.|+.+..+++...++.+++|++........ ...+.....|..+.+..+|-.+.
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavl 143 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVL 143 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEE
Confidence 36777643 56555443333478899999999999999999999999864422221 11222233455555444444444
Q ss_pred EecCC-------CcEEEEeCCC---------------C----eeE---------------------Eeecc-cCcEEEEE
Q 042260 95 SGSED-------GTVKIWDLRA---------------P----VCQ---------------------MEYES-RAAVNTVV 126 (174)
Q Consensus 95 t~~~d-------g~v~iwd~~~---------------~----~~~---------------------~~~~~-~~~v~~~~ 126 (174)
+.+.+ +...+|.+.. + .+. ..+.. .+.+.-+.
T Consensus 144 t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~ 223 (829)
T KOG2280|consen 144 TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKIS 223 (829)
T ss_pred ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEE
Confidence 33321 1122222211 1 000 00111 24578889
Q ss_pred EccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 127 LHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
++|+.++|+-=..+|.|.+-++...++.|+++
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 99999999988899999998888888777765
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.07 E-value=0.67 Score=38.69 Aligned_cols=103 Identities=9% Similarity=0.107 Sum_probs=58.9
Q ss_pred CeEEEEEcCCCceEEEec-------CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC----------
Q 042260 37 QVNRLEITPNKHYLAAAG-------NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED---------- 99 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---------- 99 (174)
.+...+++|++..++... +..-.||-...+....... .+ .....-.|+++|+.+++.+..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-EG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-cC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 466788899888765432 3334555543222122221 12 236777899998877776533
Q ss_pred --CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEE
Q 042260 100 --GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRV 145 (174)
Q Consensus 100 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i 145 (174)
+.+.+.++....... .....|..+.|+|+|..++... ++.|.+
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 222222333322211 2245799999999999887654 355655
No 381
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=1.3 Score=34.76 Aligned_cols=147 Identities=15% Similarity=0.226 Sum_probs=95.2
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.+.++...+..|.+.|..+....+...... ....+++++++..+..+. +..+.+.|-.+... ......-..+
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--~~~~~vG~~P- 162 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--TATIPVGNTP- 162 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--EEEEecCCCc-
Confidence 355666667889999987777776665443 467788999886655432 35566666655432 2222221223
Q ss_pred EEEEEeeCCCEEEE-ecCCCcEEEEeCCCCeeEE-----eecccCcEEEEEEccCCCEEEEeeC---CCcEEEEeCCCCc
Q 042260 82 MAVGFQCDGNWMYS-GSEDGTVKIWDLRAPVCQM-----EYESRAAVNTVVLHPNQTELISGDQ---NGNIRVWDLTANS 152 (174)
Q Consensus 82 ~~~~~~~~~~~l~t-~~~dg~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~ 152 (174)
..+++.++|+.++. -..++.+.+.|........ ..........+.+.|++..+...-. ++.+...|..++.
T Consensus 163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 163 TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 88899999995544 4578999999977655442 1223344577889999997655433 3588888888766
Q ss_pred ceee
Q 042260 153 CSCE 156 (174)
Q Consensus 153 ~~~~ 156 (174)
....
T Consensus 243 v~~~ 246 (381)
T COG3391 243 VTAT 246 (381)
T ss_pred EEEe
Confidence 5543
No 382
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.02 E-value=1.2 Score=34.33 Aligned_cols=135 Identities=16% Similarity=0.211 Sum_probs=78.6
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCCCCeEEeec-CCCC--
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSPQPVMSYDQ-HTNN-- 80 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~-~~~~-- 80 (174)
+.+.++|..+++.+..+... ....+..+|+++.+.... .+.|.+||..+-.+.....++. ++..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47999999999887777632 344567889988776542 3458899987653322222222 1111
Q ss_pred --EEEEEEeeCCCEEEE--ecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCC-Ccce
Q 042260 81 --VMAVGFQCDGNWMYS--GSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTA-NSCS 154 (174)
Q Consensus 81 --v~~~~~~~~~~~l~t--~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~-~~~~ 154 (174)
....+.+.++++++- .+.-..|.+-|+...+...++..+.-..- -|.+ ..+.+-+.||.+....+.+ ++..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI---YPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE---EEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE---EecCCCceEEEecCCceEEEEECCCCCEe
Confidence 112345556665443 34556677777777776665554332221 2322 3477778899988888883 4443
No 383
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.83 E-value=0.68 Score=37.04 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=70.2
Q ss_pred cEEEEEeeCCCcEEEE--ECCCCceeEEeecCCCCeEEEEEcCCCceEEEec--CC--cEEEEEcCCCCCCCeEEeecCC
Q 042260 5 SVILATASYDKTIKFW--EAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG--NP--HIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
..++++...|+...+| |+.+++.. .+....+.-..=.|+|+|..++-.. .+ .|.+++.+...... .+...
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~-- 325 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSG-- 325 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccC--
Confidence 5677888888885555 67666533 3433322223457889988655332 23 36666666554432 22222
Q ss_pred CCEEEEEEeeCCCEEEEecC-CCc--EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEE
Q 042260 79 NNVMAVGFQCDGNWMYSGSE-DGT--VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELIS 136 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~-dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 136 (174)
..-..-.++|+|++|+..+. +|. |.+.|+........+........-.+.|++..+..
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 22226678999999888764 344 55555544332222222333334456777776553
No 384
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=0.85 Score=40.81 Aligned_cols=136 Identities=13% Similarity=0.311 Sum_probs=81.7
Q ss_pred eCCCcEEEEECCCCceeEEeecCCCCeEEEEE-cCC--------CceEEEecCCcEEEEEcC----CCCCCCe---EEee
Q 042260 12 SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEI-TPN--------KHYLAAAGNPHIRLFDVN----SSSPQPV---MSYD 75 (174)
Q Consensus 12 s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~--------~~~~~~~~d~~i~i~d~~----~~~~~~~---~~~~ 75 (174)
+.|..+.+|+.+++...+.+..-...|..+.. .|. ..+++.+.--.+.++-+. +...... ....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45888999999997777776654445554432 231 233443333344444432 1111111 1111
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC--------Cee-----------------EEee-cccCcEEEEEEcc
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA--------PVC-----------------QMEY-ESRAAVNTVVLHP 129 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~--------~~~-----------------~~~~-~~~~~v~~~~~~~ 129 (174)
.....|.++....+|+.|.+|-.| .+|.+.- .+| .... .+..+|..+++..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 224568888878889887777655 5555411 101 0111 3356899999988
Q ss_pred CCCEEEEeeCCCcEEEEeCCC
Q 042260 130 NQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 130 ~~~~l~s~~~d~~i~iwd~~~ 150 (174)
..+.+.+-++.|+|+.||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 778888999999999999997
No 385
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.68 E-value=0.21 Score=41.09 Aligned_cols=37 Identities=16% Similarity=0.500 Sum_probs=28.7
Q ss_pred cEEEEEEcc----CCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 121 AVNTVVLHP----NQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 121 ~v~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.+.++++++ +..+|++.+.|+++|+||++++.|....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 456666666 7788999999999999999999995543
No 386
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.64 E-value=0.91 Score=33.57 Aligned_cols=114 Identities=11% Similarity=0.251 Sum_probs=67.4
Q ss_pred CCCeEEEEEcCCCceEEEecCC--cEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe-
Q 042260 35 DSQVNRLEITPNKHYLAAAGNP--HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV- 111 (174)
Q Consensus 35 ~~~v~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~- 111 (174)
...+.++.|+|+...+.+..|. .|.-++.. ++......+.+ .....++++..++.++++.-.++.+.+.++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 3458999999975544444333 34444542 33322233333 3678999998888888877678999998883211
Q ss_pred ---e----EEee--c--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 112 ---C----QMEY--E--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 112 ---~----~~~~--~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
. ...+ . .+..+-.+++.|..+.|+.+-+....++|.++.
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 1 1111 1 234588999999988888887777777777764
No 387
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.00 E-value=2.2 Score=32.97 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=46.1
Q ss_pred cEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEe-eCCCcEEEEeCCCCcceeecCcccceeEEE
Q 042260 101 TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISG-DQNGNIRVWDLTANSCSCELGLQYGLRTFL 167 (174)
Q Consensus 101 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 167 (174)
.|=++|+.+.+.+..+....++.++.++.+.. .|++. ..++.+.+||..+++....+.-...-.+++
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~l~ 338 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPTLI 338 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--EE
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCceEE
Confidence 47777888888888888777888999988665 55444 357899999999999888776444444443
No 388
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.63 E-value=1.9 Score=36.72 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCcEEEEEeeCCCcEEEEECCC-------C----c---------eeEEeecCCCCeEEEEEc--CCCceEEEecCC-cEE
Q 042260 3 QPSVILATASYDKTIKFWEAKS-------G----R---------CYRTIQYPDSQVNRLEIT--PNKHYLAAAGNP-HIR 59 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~~~~~~d~-~i~ 59 (174)
....+|+.+..||.|.+|.+++ . . +...++. +..+++++++ ....+++++.+. .|.
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEE
Confidence 3456899999999999997521 1 0 1111121 3468999998 777788877654 466
Q ss_pred EEEcCCC-CCCCeEEeecCCCCEEEEEEeeCC---C---EEEEecCCCcEEEEeCC
Q 042260 60 LFDVNSS-SPQPVMSYDQHTNNVMAVGFQCDG---N---WMYSGSEDGTVKIWDLR 108 (174)
Q Consensus 60 i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~t~~~dg~v~iwd~~ 108 (174)
+|-.... +.........+..+|.++.|.++. . .+++++-.|.+-+|++.
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 6654331 111111111356778899987643 2 78889999999998883
No 389
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.55 E-value=2.2 Score=31.51 Aligned_cols=149 Identities=11% Similarity=0.214 Sum_probs=85.8
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCC-CeE-----E--
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQ-PVM-----S-- 73 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~-~~~-----~-- 73 (174)
.+.++++....+.|.-.+. +|+.++.+.... ....++.+-.++.++++.. ++.+.++++...... ... .
T Consensus 33 ~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~ 111 (248)
T PF06977_consen 33 TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLG 111 (248)
T ss_dssp TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE--
T ss_pred CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecc
Confidence 4678888888898888886 478888887543 4578888888777777664 667888888432211 111 1
Q ss_pred ee-cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC---CeeEEe-----ec----ccCcEEEEEEccCCCE-EEEeeC
Q 042260 74 YD-QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA---PVCQME-----YE----SRAAVNTVVLHPNQTE-LISGDQ 139 (174)
Q Consensus 74 ~~-~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---~~~~~~-----~~----~~~~v~~~~~~~~~~~-l~s~~~ 139 (174)
.. .++..+..++|++.++.++.+-+....+++.++. ...... +. ....+.++.++|.... ++....
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e 191 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE 191 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT
T ss_pred cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC
Confidence 11 2445699999999888777777777777777653 111110 01 1234789999996554 555666
Q ss_pred CCcEEEEeCCCCcce
Q 042260 140 NGNIRVWDLTANSCS 154 (174)
Q Consensus 140 d~~i~iwd~~~~~~~ 154 (174)
+..|...| ..++..
T Consensus 192 s~~l~~~d-~~G~~~ 205 (248)
T PF06977_consen 192 SRLLLELD-RQGRVV 205 (248)
T ss_dssp TTEEEEE--TT--EE
T ss_pred CCeEEEEC-CCCCEE
Confidence 77788888 444433
No 390
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.55 E-value=0.44 Score=34.50 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=43.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEe-------e-------cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTI-------Q-------YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS 66 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 66 (174)
.++.|+.-..+|.+++||+++++.+..- . .....|..+.++.+|..++.-.++....|+..-.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4566888888999999999988764322 1 1234567777777777777666677777776433
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.37 E-value=3.4 Score=33.10 Aligned_cols=125 Identities=15% Similarity=0.288 Sum_probs=58.0
Q ss_pred eCCCcEEEEECCCCceeEEeecCCCC--eEEEEEc--CCCc--eEEEecCCcE-EEEEcCCCCCCC--eEEee-------
Q 042260 12 SYDKTIKFWEAKSGRCYRTIQYPDSQ--VNRLEIT--PNKH--YLAAAGNPHI-RLFDVNSSSPQP--VMSYD------- 75 (174)
Q Consensus 12 s~D~~v~vwd~~~~~~~~~~~~~~~~--v~~~~~~--~~~~--~~~~~~d~~i-~i~d~~~~~~~~--~~~~~------- 75 (174)
.+-.++.+||+.+.+.++++...+.. ...+.|. |... ++.++....| ++|.-..+++.. +....
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 34678999999999999999865322 3445554 4332 2323333333 333222222111 11110
Q ss_pred ----------cCCCCEEEEEEeeCCCEEEEecC-CCcEEEEeCCCC---eeEEeecc-----------------cCcEEE
Q 042260 76 ----------QHTNNVMAVGFQCDGNWMYSGSE-DGTVKIWDLRAP---VCQMEYES-----------------RAAVNT 124 (174)
Q Consensus 76 ----------~~~~~v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~---~~~~~~~~-----------------~~~v~~ 124 (174)
.-..-++.+..+.+.++|+-.+. +|.+|-||+..+ +.+....- ....+.
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 11345788889999998776654 899999998653 33322111 123478
Q ss_pred EEEccCCCEEEE
Q 042260 125 VVLHPNQTELIS 136 (174)
Q Consensus 125 ~~~~~~~~~l~s 136 (174)
+..+-+|+.|..
T Consensus 379 vqlS~DGkRlYv 390 (461)
T PF05694_consen 379 VQLSLDGKRLYV 390 (461)
T ss_dssp EEE-TTSSEEEE
T ss_pred EEEccCCeEEEE
Confidence 888889888764
No 392
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.03 E-value=3.1 Score=31.71 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCc----EEEEeCCCCee
Q 042260 57 HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT----VKIWDLRAPVC 112 (174)
Q Consensus 57 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~----v~iwd~~~~~~ 112 (174)
.+..||+.+.++..+..+... ......+...+++..+.|+.++. +..||.++...
T Consensus 140 ~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 140 KSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 477888887766544322211 11112222345677777776542 45788876543
No 393
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.83 E-value=2.1 Score=36.00 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=44.1
Q ss_pred eeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEc--cCCCEEEEeeCCCcEEEEeC
Q 042260 87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLH--PNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~--~~~~~l~s~~~d~~i~iwd~ 148 (174)
+..++.-+..+....+.|||.+........ .....|.++.|. |+++.+++.|-...|.+|--
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 334444333455668999999987755443 347789999885 67888888888888888754
No 394
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.71 E-value=2.7 Score=33.53 Aligned_cols=83 Identities=11% Similarity=0.178 Sum_probs=53.3
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEE--E-EEccC----------------CC-EEE
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNT--V-VLHPN----------------QT-ELI 135 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~--~-~~~~~----------------~~-~l~ 135 (174)
.....+..+..+|.+++.+...+=|+|.++|+.+...+.-++.-....+ + ...+. .- .++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3456688899999999999888889999999987654332221110000 0 00000 01 133
Q ss_pred EeeCCCcEEEEeCCCCcceeecC
Q 042260 136 SGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 136 s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
-+-.-|.|.+|.++.++++..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 46678899999999999887654
No 395
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=1.9 Score=35.27 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=55.6
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCC---------CCeeE---Eee-------c--ccCcEEEEEEccCC---CEEE
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLR---------APVCQ---MEY-------E--SRAAVNTVVLHPNQ---TELI 135 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~---------~~~~~---~~~-------~--~~~~v~~~~~~~~~---~~l~ 135 (174)
.|..+-.++.|..++..+.+|.+.+.=.+ ..+.. .++ . ..-.+...+|||+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 45666778899999999999977665321 11111 111 1 11235678999975 5677
Q ss_pred EeeCCCcEEEEeCCCCcceeecCc
Q 042260 136 SGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 136 s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
.-++|..||+||+.....++..+.
T Consensus 185 iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred EEecCcEEEEEecCCcchhhccCC
Confidence 778899999999999998888653
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.54 E-value=3.6 Score=31.18 Aligned_cols=149 Identities=17% Similarity=0.247 Sum_probs=85.2
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCceEEE-e-c-CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC
Q 042260 23 KSGRCYRTIQYPDSQVNRLEITPNKHYLAA-A-G-NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED 99 (174)
Q Consensus 23 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d 99 (174)
+.|+++.....+ ....++.++|....-+. + . .-...++|....+..........+--.-.-.|+++|.++++.-+|
T Consensus 56 eaGk~v~~~~lp-aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 56 EAGKIVFATALP-ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred cCCceeeeeecc-cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 456777666544 35677888886543222 2 2 224678888765432222211111112223589999999987554
Q ss_pred -----CcEEEEeCCCCee-EEeec-ccCcEEEEEEccCCCEEEEeeC------C------------CcEEEEeCCCCcce
Q 042260 100 -----GTVKIWDLRAPVC-QMEYE-SRAAVNTVVLHPNQTELISGDQ------N------------GNIRVWDLTANSCS 154 (174)
Q Consensus 100 -----g~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~~------d------------~~i~iwd~~~~~~~ 154 (174)
|.|-+||.+.... +.++. +.-....+.+.++++.++.+.. | -++-+-|-.++...
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 7899999875322 23332 3445577888899998775421 0 12344454555556
Q ss_pred eecCcccceeEEEEEeec
Q 042260 155 CELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~ 172 (174)
.+.+++....+..+=|-+
T Consensus 215 ekh~Lp~~l~~lSiRHld 232 (366)
T COG3490 215 EKHTLPASLRQLSIRHLD 232 (366)
T ss_pred hhccCchhhhhcceeeee
Confidence 667777666666655543
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.13 E-value=3.9 Score=30.54 Aligned_cols=145 Identities=10% Similarity=0.096 Sum_probs=83.6
Q ss_pred CcEEEEEeeCCC--cEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDK--TIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~--~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.++-|.|.-| .|+.+|+.+|+.......+. ..-.++....+..+..+-.++.+.+||..+- +.+..+.. ...
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl--~~~~~~~y-~~E 131 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTL--KKIGTFPY-PGE 131 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTT--EEEEEEE--SSS
T ss_pred CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccc--eEEEEEec-CCc
Confidence 456667776666 59999999999887777553 3345666665544555666788899999764 33333332 345
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec---cc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---SR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
=..++ .+++.++.......+.++|..+.+....+. .. ..++.+.+. +|...|=.=....|-.-|..++.+.
T Consensus 132 GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 132 GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp --EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE
T ss_pred ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE
Confidence 66666 356666666666689999987755444332 11 235666665 3443332223335666677777655
No 398
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.89 E-value=0.78 Score=24.04 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.5
Q ss_pred CEEEEEEeeCC---CEEEEecCCCcEEEEeCCC
Q 042260 80 NVMAVGFQCDG---NWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 80 ~v~~~~~~~~~---~~l~t~~~dg~v~iwd~~~ 109 (174)
.+.++.|+|.+ .+++-+-.-|.|.++|+|+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47788999744 4788888889999999995
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.72 E-value=6.8 Score=32.66 Aligned_cols=114 Identities=12% Similarity=0.188 Sum_probs=66.9
Q ss_pred CeEEEEEcCCC-----ceEEEecCCcEEEEEcCCC---CCCCeEEeecCCCC---E--EEEEEeeCCCEEE-EecCCCcE
Q 042260 37 QVNRLEITPNK-----HYLAAAGNPHIRLFDVNSS---SPQPVMSYDQHTNN---V--MAVGFQCDGNWMY-SGSEDGTV 102 (174)
Q Consensus 37 ~v~~~~~~~~~-----~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~---v--~~~~~~~~~~~l~-t~~~dg~v 102 (174)
.|.++.|.|-+ .+++......+.+|.+-.. ..+.+....++... + -++.|+|....++ -...|- -
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-S 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-S 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-e
Confidence 37889999842 4666666778999998421 12222222233211 1 2445777555433 233442 2
Q ss_pred EEEeCCC--CeeEEeecccCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCCC
Q 042260 103 KIWDLRA--PVCQMEYESRAAVNTVVLHPNQTELISG-DQNGNIRVWDLTAN 151 (174)
Q Consensus 103 ~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~ 151 (174)
.+.+++. ..+...+...+.|.|.+|.++|+.|+.+ ++.=.-++||-..+
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 3445543 3334445667889999999999886543 44445789997754
No 400
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.59 E-value=2.9 Score=34.24 Aligned_cols=95 Identities=14% Similarity=0.235 Sum_probs=61.7
Q ss_pred EeeCCCcEEEEECCC-Cc-eeEEeecCC----CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 10 TASYDKTIKFWEAKS-GR-CYRTIQYPD----SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 10 s~s~D~~v~vwd~~~-~~-~~~~~~~~~----~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
.|-.|..|.=||.+- +. .+...+.++ ....+.+-..+|.+++++.+|.||+||- .+. .....+++-...|..
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~-~AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGR-RAKTALPGLGDAIKH 476 (644)
T ss_pred EeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhh-hhhhcccccCCceee
Confidence 466677889999763 22 222222222 2345566666788888889999999997 221 222234556678999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDL 107 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~ 107 (174)
+..+.+|++|+..+.. .+.+-++
T Consensus 477 VdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 477 VDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred EEeeccCcEEEEeccc-EEEEEEE
Confidence 9999999998877654 5555554
No 401
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.58 E-value=5.9 Score=31.57 Aligned_cols=54 Identities=7% Similarity=0.191 Sum_probs=39.4
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--cCcEEEEEEccCCC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--RAAVNTVVLHPNQT 132 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~ 132 (174)
+++..++.+|+++++|.-..+|.+.+.+..-..+...+.. ......+.|.-++.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 4689999999999999999999999988665554444433 34556777765544
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.51 E-value=1.2 Score=23.37 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=23.5
Q ss_pred cEEEEEEccCCC---EEEEeeCCCcEEEEeCCCC
Q 042260 121 AVNTVVLHPNQT---ELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 121 ~v~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~ 151 (174)
.|.++.|+|+.. .|+-+-..|.|.++|+++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578999998554 5555555678999999963
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.47 E-value=6.2 Score=31.60 Aligned_cols=145 Identities=10% Similarity=0.166 Sum_probs=80.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc-----eeEEeecCCCCeEEEEEcC-----CCceEEEecCCcEEEEEcCCCC------
Q 042260 4 PSVILATASYDKTIKFWEAKSGR-----CYRTIQYPDSQVNRLEITP-----NKHYLAAAGNPHIRLFDVNSSS------ 67 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~d~~i~i~d~~~~~------ 67 (174)
.+..|+.||..|.+|||+...++ .+.+.+. ..+|..+..-+ ....++.-.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 45679999999999999985533 2222222 34676665432 2234444445567777763211
Q ss_pred --CCCeEEeecCC-CCEEEEEEee----C-CCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC
Q 042260 68 --PQPVMSYDQHT-NNVMAVGFQC----D-GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 68 --~~~~~~~~~~~-~~v~~~~~~~----~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 139 (174)
......+.++- .....+++-+ . ..+|+-=+-||.+.+++-+...-...+..---...+++.+....++++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 11111222211 1122222222 2 23566668899999998776443332222222345667777777888888
Q ss_pred CCcEEEEeCC
Q 042260 140 NGNIRVWDLT 149 (174)
Q Consensus 140 d~~i~iwd~~ 149 (174)
+..+..|...
T Consensus 195 s~~l~~Yky~ 204 (418)
T PF14727_consen 195 SWTLECYKYQ 204 (418)
T ss_pred ceeEEEecHH
Confidence 8788877764
No 404
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.17 E-value=0.98 Score=40.06 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=76.5
Q ss_pred EEEeeCCCcEEEEECCCCceeEE-----ee------cCCCCeEEEEEcCCC--ceEEEecCCcEEEEEcCCCCCCCeEEe
Q 042260 8 LATASYDKTIKFWEAKSGRCYRT-----IQ------YPDSQVNRLEITPNK--HYLAAAGNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~-----~~------~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~ 74 (174)
++..+++..|..||+++-..... +. .......++.|+|.= ..++...|..|++..+........ .+
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~-s~ 195 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT-SF 195 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc-cc
Confidence 44556667789999875433221 11 112234567787742 233445677787766643211111 11
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-----cccCcEEEEEEccCCCEEEE
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-----ESRAAVNTVVLHPNQTELIS 136 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s 136 (174)
.-....++++|++.|+.++.|-..|++.=|...-.. ...+ ....+|.+++|..+..++++
T Consensus 196 -p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 196 -PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred -CcccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecceeEEEE
Confidence 234678999999999999999999998877644321 1111 22467999999887777664
No 405
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.99 E-value=6.8 Score=31.18 Aligned_cols=30 Identities=30% Similarity=0.606 Sum_probs=25.2
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 121 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.|..++..+..+.+.+.+++|.|.+||+..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 389999999889999999999999999985
No 406
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.92 E-value=8.7 Score=32.28 Aligned_cols=70 Identities=10% Similarity=0.088 Sum_probs=42.0
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEE---EeCCCCeeEE------eecccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKI---WDLRAPVCQM------EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~i---wd~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
...+..+.|+++|+.++... ++.|.+ -......... .......+.++.|.+++..+ .+..++...+|-+
T Consensus 447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 45799999999999887765 466665 2222222111 11122346888999888854 5555554455555
Q ss_pred C
Q 042260 149 T 149 (174)
Q Consensus 149 ~ 149 (174)
.
T Consensus 525 ~ 525 (591)
T PRK13616 525 N 525 (591)
T ss_pred e
Confidence 4
No 407
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.75 E-value=0.94 Score=35.13 Aligned_cols=82 Identities=12% Similarity=0.173 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-Eeecc---------------
Q 042260 55 NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEYES--------------- 118 (174)
Q Consensus 55 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~--------------- 118 (174)
.+...++|+.++...++. .....+....|+|+|+.++-.. ++.|.+++....... .+...
T Consensus 22 ~~~y~i~d~~~~~~~~l~---~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLT---PPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred ceeEEEEecCCCceEECc---CCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 345788999876433322 2256788889999999988875 468999987655322 22211
Q ss_pred --cCcEEEEEEccCCCEEEEeeCC
Q 042260 119 --RAAVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 119 --~~~v~~~~~~~~~~~l~s~~~d 140 (174)
-..-..+-|+|+++.|+....|
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccccceEECCCCCEEEEEEEC
Confidence 0112567899999998876543
No 408
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.73 E-value=0.4 Score=37.17 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=51.9
Q ss_pred CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec---------------C-
Q 042260 14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ---------------H- 77 (174)
Q Consensus 14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------~- 77 (174)
.+.+.+||+++++...-... ...+....|+|++..++-..++.|.+.+..++... .++..+ .
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCCCeE-EeccccceeEEcCccceeccccc
Confidence 45689999998765433332 45688899999999988888888998887654221 111111 0
Q ss_pred CCCEEEEEEeeCCCEEEEec
Q 042260 78 TNNVMAVGFQCDGNWMYSGS 97 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~ 97 (174)
-..-.++-|+|++++|+...
T Consensus 100 ~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEE
T ss_pred cccccceEECCCCCEEEEEE
Confidence 12335677888888877653
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.60 E-value=6.9 Score=30.58 Aligned_cols=101 Identities=9% Similarity=0.111 Sum_probs=52.4
Q ss_pred CeEEEEEcCCCceEEEecCCcEEEEEcCCC-----CCCCeE-Eeec----CCCCEEEEEEeeCCCEEEEecCC-------
Q 042260 37 QVNRLEITPNKHYLAAAGNPHIRLFDVNSS-----SPQPVM-SYDQ----HTNNVMAVGFQCDGNWMYSGSED------- 99 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-----~~~~~~-~~~~----~~~~v~~~~~~~~~~~l~t~~~d------- 99 (174)
....+++.+++ ++++....-.++.|.... +...+. .+.. +......+.+.++|++.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~ 151 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTR 151 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceecc
Confidence 45778888888 555543332233344221 111111 1211 12336688899999876654421
Q ss_pred ------------CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee
Q 042260 100 ------------GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 100 ------------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 138 (174)
|.|.-+|.........-..-...+.++|+|+++.+++-.
T Consensus 152 ~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 152 PGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 334444444333222112234467899999988776543
No 410
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.54 E-value=2.6 Score=34.75 Aligned_cols=36 Identities=22% Similarity=0.533 Sum_probs=26.9
Q ss_pred CEEEEEEee----CCCEEEEecCCCcEEEEeCCCCeeEEe
Q 042260 80 NVMAVGFQC----DGNWMYSGSEDGTVKIWDLRAPVCQME 115 (174)
Q Consensus 80 ~v~~~~~~~----~~~~l~t~~~dg~v~iwd~~~~~~~~~ 115 (174)
.....+... +..++++-+.|+.+|+||+.+.+++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 345555555 678999999999999999999888443
No 411
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.20 E-value=6.7 Score=29.79 Aligned_cols=115 Identities=10% Similarity=0.241 Sum_probs=74.8
Q ss_pred CCeEEEEEcCCCceEEEecCCcEEEEEcC-CCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee--
Q 042260 36 SQVNRLEITPNKHYLAAAGNPHIRLFDVN-SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-- 112 (174)
Q Consensus 36 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-- 112 (174)
..+.++.|+|+...+.+..+....+..+. .++......+.+ -.....+.|..++++.++--.++.+.++.+.....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 34889999998777666655554444443 333322233333 34566778888888888888888888877654311
Q ss_pred -----EEeec---c-cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 113 -----QMEYE---S-RAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 113 -----~~~~~---~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
...++ . +...-.+++.|.+..|+.+-+-.-++|+.++-.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 11111 1 345678999999999998888778888877743
No 412
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.06 E-value=8.1 Score=30.52 Aligned_cols=110 Identities=17% Similarity=0.288 Sum_probs=64.4
Q ss_pred EEEEEcCCCceEEEe----cC--CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecC-----------CCc
Q 042260 39 NRLEITPNKHYLAAA----GN--PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSE-----------DGT 101 (174)
Q Consensus 39 ~~~~~~~~~~~~~~~----~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-----------dg~ 101 (174)
....++|++.+++-+ ++ ..++++|+++++...- .+. ......+.|.++++.|+-... ...
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 357889998876643 22 2489999988732111 111 112223899998776544432 224
Q ss_pred EEEEeCCCCeeE--Eeec--ccCc-EEEEEEccCCCEEEEee-C--C-CcEEEEeCCCC
Q 042260 102 VKIWDLRAPVCQ--MEYE--SRAA-VNTVVLHPNQTELISGD-Q--N-GNIRVWDLTAN 151 (174)
Q Consensus 102 v~iwd~~~~~~~--~~~~--~~~~-v~~~~~~~~~~~l~s~~-~--d-~~i~iwd~~~~ 151 (174)
|..|++.++... ..++ .... ...+..+++++.|+..+ . + ..+.+-|....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 788888765322 2232 2333 67888999999876432 2 2 35888888774
No 413
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.54 E-value=4.1 Score=30.04 Aligned_cols=89 Identities=21% Similarity=0.345 Sum_probs=51.5
Q ss_pred EEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecC-C--CcEEEEeCCC--CeeEEe-----ecccCcEEEEEE
Q 042260 58 IRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSE-D--GTVKIWDLRA--PVCQME-----YESRAAVNTVVL 127 (174)
Q Consensus 58 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d--g~v~iwd~~~--~~~~~~-----~~~~~~v~~~~~ 127 (174)
--+||+.+++..++.. ....-+.+-.+-++|+++.+|+. | ..+++++... ..+... ...+.--.+...
T Consensus 48 s~~yD~~tn~~rpl~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEEeccC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 4689998876544322 12222334457789999999876 2 3588887643 111111 122223345667
Q ss_pred ccCCCEEEEeeCCC-cEEEEeC
Q 042260 128 HPNQTELISGDQNG-NIRVWDL 148 (174)
Q Consensus 128 ~~~~~~l~s~~~d~-~i~iwd~ 148 (174)
.|+|+.++.|+.+. +..+|.-
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCC
Confidence 78999988887763 3455554
No 414
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=89.34 E-value=8.2 Score=29.56 Aligned_cols=142 Identities=13% Similarity=0.198 Sum_probs=80.8
Q ss_pred EEEEECCCCceeEEeec--C---CCCeEEEEEcCCCceEEEecC----------CcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 17 IKFWEAKSGRCYRTIQY--P---DSQVNRLEITPNKHYLAAAGN----------PHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 17 v~vwd~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+.+++.+++..+..+.. . ....+.....|+|.+.++.-. ..-++|-+.... ........+...-
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~~~~l~~~~~~~~ 165 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-GVVRLLDDDLTIP 165 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC-CEEEeecCcEEec
Confidence 56666655544222221 1 234567788888887665322 112455554211 1122233445667
Q ss_pred EEEEEeeCCCEEEEe-cCCCcEEEEeCCC--C----ee-EEee-cccCcEEEEEEccCCCEEEEeeCCC-cEEEEeCCCC
Q 042260 82 MAVGFQCDGNWMYSG-SEDGTVKIWDLRA--P----VC-QMEY-ESRAAVNTVVLHPNQTELISGDQNG-NIRVWDLTAN 151 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~-~~dg~v~iwd~~~--~----~~-~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~ 151 (174)
..++|+|+++.++.+ +..+.+.-+++.. . .. ...+ ..+...-.++..-++++-+++..+| .|..|+.. +
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence 789999999766555 4457888887752 1 00 1111 1234455667777777765555554 89999998 7
Q ss_pred cceeecCcc
Q 042260 152 SCSCELGLQ 160 (174)
Q Consensus 152 ~~~~~~~~~ 160 (174)
+...+..+|
T Consensus 245 ~l~~~i~lP 253 (307)
T COG3386 245 KLLGEIKLP 253 (307)
T ss_pred cEEEEEECC
Confidence 777776665
No 415
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.96 E-value=7.6 Score=28.68 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=62.5
Q ss_pred EEEEEcCCCceEEEecC----CcEEEEEcCCCCCCCe-EEee---cCCCCEEEEEEeeCCCEEEEecCCC-cEEEEeCCC
Q 042260 39 NRLEITPNKHYLAAAGN----PHIRLFDVNSSSPQPV-MSYD---QHTNNVMAVGFQCDGNWMYSGSEDG-TVKIWDLRA 109 (174)
Q Consensus 39 ~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~l~t~~~dg-~v~iwd~~~ 109 (174)
.+-.+-++|.++.++++ ..+|+++.-.....+. .... ....--.....-++|+.|+.|+.+. ...+|.-+.
T Consensus 70 Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~ 149 (243)
T PF07250_consen 70 SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG 149 (243)
T ss_pred cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCcc
Confidence 33445567787776653 3478877543110111 0000 0111112223345899888877764 456665422
Q ss_pred C--eeE-Eeecc----c---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC-cccc
Q 042260 110 P--VCQ-MEYES----R---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG-LQYG 162 (174)
Q Consensus 110 ~--~~~-~~~~~----~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~ 162 (174)
. ... ..+.. . .----+...|+|+.++.+..+ -.|||..+...+.+++ ++..
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 150 PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCCCCCC
Confidence 1 111 11110 0 112255677999988887654 5778999887766663 3443
No 416
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.32 E-value=0.053 Score=43.42 Aligned_cols=128 Identities=15% Similarity=0.188 Sum_probs=79.5
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE--EEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL--AAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
++.+..+-.+..||-. |+....... ......++|..++..+ .+-..+.+.+||+.+...+.+ .+.+ +..-.=+.
T Consensus 49 lavaca~tiv~~YD~a-gq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL-E~gg-~~s~sll~ 124 (615)
T KOG2247|consen 49 LAVACANTIVIYYDKA-GQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL-ESGG-TSSKSLLA 124 (615)
T ss_pred eehhhhhhHHHhhhhh-cceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH-hccC-cchHHHHh
Confidence 6667777778888743 344333332 2346677777766543 334578899999976532222 1111 12222267
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCC
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d 140 (174)
|++.+..++-+-..|.+.|++.+..+...... +..++.++++.+.+. ++.++.|
T Consensus 125 wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd 179 (615)
T KOG2247|consen 125 WSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCD 179 (615)
T ss_pred hccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcH
Confidence 88888888888889999999988765444444 556788888887654 4444444
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.71 E-value=1.2 Score=38.73 Aligned_cols=137 Identities=18% Similarity=0.295 Sum_probs=72.7
Q ss_pred CcEEEEECC--CCceeEEe-----ecCCCCeEEEEEcC---CCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE-
Q 042260 15 KTIKFWEAK--SGRCYRTI-----QYPDSQVNRLEITP---NKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM- 82 (174)
Q Consensus 15 ~~v~vwd~~--~~~~~~~~-----~~~~~~v~~~~~~~---~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~- 82 (174)
|.+.|||+. .|+....+ ......+.-+.|.| +...+..+ .++.+++..+.......+ ..|...+.
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~---rsHs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLF---RSHSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHH---HhcCCCccc
Confidence 567888854 34432221 11223334445544 44445444 355677665543321111 12332222
Q ss_pred ---------EE-EEeeCCCEEEEecCCCcEEEEeCC-----CCeeEEeecc--cCcEEEEEEccCCC---------EEEE
Q 042260 83 ---------AV-GFQCDGNWMYSGSEDGTVKIWDLR-----APVCQMEYES--RAAVNTVVLHPNQT---------ELIS 136 (174)
Q Consensus 83 ---------~~-~~~~~~~~l~t~~~dg~v~iwd~~-----~~~~~~~~~~--~~~v~~~~~~~~~~---------~l~s 136 (174)
.+ ..++||+.|++.+.||.++.|.+. ...|.+.++. +.+-.|..|+.+.+ ++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 22 268899999999999999999863 3344444432 13333333554332 3455
Q ss_pred ee-CCCcEEEEeCCCCcce
Q 042260 137 GD-QNGNIRVWDLTANSCS 154 (174)
Q Consensus 137 ~~-~d~~i~iwd~~~~~~~ 154 (174)
++ .+..+++|.-..=.|.
T Consensus 310 ttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccCCcceeEeeccchhhh
Confidence 54 4667999987776666
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.53 E-value=18 Score=31.43 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=45.5
Q ss_pred CCEEEEecCCCcEEEEeCCCCeeEEeecccCcEE-------------EEEEcc--CCCEEEEeeC----------CCcEE
Q 042260 90 GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN-------------TVVLHP--NQTELISGDQ----------NGNIR 144 (174)
Q Consensus 90 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~s~~~----------d~~i~ 144 (174)
+..++.++.|+.+.-.|.++.+....+.....+. .+.-.| .+..|+.|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 4578888889999999999887776554332221 011111 2345555543 68899
Q ss_pred EEeCCCCcceeecC
Q 042260 145 VWDLTANSCSCELG 158 (174)
Q Consensus 145 iwd~~~~~~~~~~~ 158 (174)
-+|.++++..+++.
T Consensus 340 A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 340 AFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCcEeeEEe
Confidence 99999999887764
No 419
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=87.48 E-value=13 Score=29.60 Aligned_cols=150 Identities=10% Similarity=0.153 Sum_probs=78.6
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecC--------CCCeEEEEEc-----CCC----ceEEEecCCcEEEEEcCC-CC
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYP--------DSQVNRLEIT-----PNK----HYLAAAGNPHIRLFDVNS-SS 67 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~--------~~~v~~~~~~-----~~~----~~~~~~~d~~i~i~d~~~-~~ 67 (174)
.+++.|..+|++.|-|++....+..-... ...++.+.|. .++ .++++...|.+.+|.+.. ..
T Consensus 98 GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~ 177 (395)
T PF08596_consen 98 GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN 177 (395)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG
T ss_pred cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC
Confidence 37889999999999999877766553321 2346667665 222 245555678888887642 11
Q ss_pred CCCeEE----eecCCCCEEEEE-EeeC---------------------CCEEEEecCCCcEEEEeCCCCeeEEe-ecccC
Q 042260 68 PQPVMS----YDQHTNNVMAVG-FQCD---------------------GNWMYSGSEDGTVKIWDLRAPVCQME-YESRA 120 (174)
Q Consensus 68 ~~~~~~----~~~~~~~v~~~~-~~~~---------------------~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~ 120 (174)
-..... ...+.+++..+. ++.+ ..+++. ..+..+|++...+.+.... +....
T Consensus 178 g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~~~~~ 256 (395)
T PF08596_consen 178 GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPPKSKGAHKSFDDPF 256 (395)
T ss_dssp G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT---EEEEE-SS-E
T ss_pred CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeCCCCcccceeecccc
Confidence 111111 113445666555 3221 113333 3456899998876655433 32223
Q ss_pred cEEEEEEc-----cCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 121 AVNTVVLH-----PNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 121 ~v~~~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
.+..+.+. ..+..|++-..+|.|+++.+-.=+...+
T Consensus 257 ~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 257 LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE
T ss_pred ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc
Confidence 34444553 2456677888999999999987554444
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.43 E-value=17 Score=31.19 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=43.2
Q ss_pred eCCCEEEEecCCCcEEEEeCCC-------C-------------eeEEeecccCcEEEEEEc--cCCCEEEEeeCCCcEEE
Q 042260 88 CDGNWMYSGSEDGTVKIWDLRA-------P-------------VCQMEYESRAAVNTVVLH--PNQTELISGDQNGNIRV 145 (174)
Q Consensus 88 ~~~~~l~t~~~dg~v~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~i 145 (174)
.+...|+.+..||.|.+|.++. . ++-..+..+..+..++++ ...+.+|+++....|.+
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 3556789999999999997521 0 011223345678999998 77777777777777777
Q ss_pred EeCCC
Q 042260 146 WDLTA 150 (174)
Q Consensus 146 wd~~~ 150 (174)
+-+..
T Consensus 192 Faf~l 196 (717)
T PF08728_consen 192 FAFAL 196 (717)
T ss_pred EEEec
Confidence 65553
No 421
>PLN02153 epithiospecifier protein
Probab=87.11 E-value=12 Score=28.82 Aligned_cols=54 Identities=11% Similarity=-0.016 Sum_probs=28.5
Q ss_pred CcEEEEeCCCCeeEEeec---cc--CcEEEEEEccCCCEEEEeeCC--------------CcEEEEeCCCCcce
Q 042260 100 GTVKIWDLRAPVCQMEYE---SR--AAVNTVVLHPNQTELISGDQN--------------GNIRVWDLTANSCS 154 (174)
Q Consensus 100 g~v~iwd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~l~s~~~d--------------~~i~iwd~~~~~~~ 154 (174)
..+.+||+.+........ .+ ....++ ...++..++.|+.. ..+..+|.++....
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 358888987655432211 01 111222 22355666777742 15778888776544
No 422
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.06 E-value=2.6 Score=21.16 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=24.2
Q ss_pred CCCEE-EEecCCCcEEEEeCCCCeeEEeecccCcEEEEEE
Q 042260 89 DGNWM-YSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVL 127 (174)
Q Consensus 89 ~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~ 127 (174)
+++++ ++...++.|.++|..+......+........++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 45544 4455678999999988776665554433344443
No 423
>PLN02193 nitrile-specifier protein
Probab=86.78 E-value=15 Score=29.77 Aligned_cols=145 Identities=7% Similarity=-0.003 Sum_probs=69.4
Q ss_pred cEEEEEeeCCC-----cEEEEECCCCceeEEeec---CCCCe-EEEEEcCCCceE-EEecC-----CcEEEEEcCCCCCC
Q 042260 5 SVILATASYDK-----TIKFWEAKSGRCYRTIQY---PDSQV-NRLEITPNKHYL-AAAGN-----PHIRLFDVNSSSPQ 69 (174)
Q Consensus 5 ~~~l~s~s~D~-----~v~vwd~~~~~~~~~~~~---~~~~v-~~~~~~~~~~~~-~~~~d-----~~i~i~d~~~~~~~ 69 (174)
+.+.+-|+.++ .+..||+.+.+-...-.. +.... ..+... .++++ .++.+ ..+..||+.+.++.
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 34566676653 477888876543221111 11111 122222 33443 33322 23567787665443
Q ss_pred CeEEe---ecCCCCEEEEEEeeCCCEEEEecCC----CcEEEEeCCCCeeEEeecc------cCcEEEEEEccCCCEEEE
Q 042260 70 PVMSY---DQHTNNVMAVGFQCDGNWMYSGSED----GTVKIWDLRAPVCQMEYES------RAAVNTVVLHPNQTELIS 136 (174)
Q Consensus 70 ~~~~~---~~~~~~v~~~~~~~~~~~l~t~~~d----g~v~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s 136 (174)
.+... ...+...... .-+++.++.++.+ ..+.++|+.+......... +....++. .++..++.
T Consensus 308 ~~~~~~~~~~~R~~~~~~--~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~ 383 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLE--VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIF 383 (470)
T ss_pred eCCCCCCCCCCCCCcEEE--EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEE
Confidence 22110 1111222122 2356666666654 4588999887654332111 11122222 25666777
Q ss_pred eeCC--------------CcEEEEeCCCCcce
Q 042260 137 GDQN--------------GNIRVWDLTANSCS 154 (174)
Q Consensus 137 ~~~d--------------~~i~iwd~~~~~~~ 154 (174)
|+.+ ..+.++|+.+.+..
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 7753 24788888877644
No 424
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=86.77 E-value=14 Score=29.16 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=93.3
Q ss_pred CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcCCCCCCCeEE---eecCCCCEEEEEEe
Q 042260 13 YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVNSSSPQPVMS---YDQHTNNVMAVGFQ 87 (174)
Q Consensus 13 ~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~---~~~~~~~v~~~~~~ 87 (174)
.++++-+.|..+++...+......+ ..+++.|++..+... .++.+.+.|........ .. ...-...-..+.+.
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~ 215 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVD 215 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEEC
Confidence 4788888888888888776544444 889999998855443 47778888865543221 00 01112334567788
Q ss_pred eCCCEEEEecCC---CcEEEEeCCCCeeEEe-ecccC-cEEEEEEccCCCEEEEee-CCCcEEEEeCCCCcceeec
Q 042260 88 CDGNWMYSGSED---GTVKIWDLRAPVCQME-YESRA-AVNTVVLHPNQTELISGD-QNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 88 ~~~~~l~t~~~d---g~v~iwd~~~~~~~~~-~~~~~-~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~ 157 (174)
++|++++..... +.+...|......... ..... ....+..+|++..+.+.. ..+.+.+-|-.+....-..
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 888865554333 5888888887665543 22222 456788999999887763 4478888888887665443
No 425
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.71 E-value=14 Score=29.19 Aligned_cols=146 Identities=12% Similarity=0.173 Sum_probs=75.4
Q ss_pred EEEEEeeCCCc----EEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecC-----------CcEEEEEcCCCCCC
Q 042260 6 VILATASYDKT----IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGN-----------PHIRLFDVNSSSPQ 69 (174)
Q Consensus 6 ~~l~s~s~D~~----v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d-----------~~i~i~d~~~~~~~ 69 (174)
.++++-+..|. ++++|+++|+.+...-.. .....+.|.+++..+ .+..+ ..++.|.+.+....
T Consensus 137 ~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~ 215 (414)
T PF02897_consen 137 RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE 215 (414)
T ss_dssp EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG
T ss_pred EEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHh
Confidence 34444444444 999999999776533111 112338999986544 44322 12677777665434
Q ss_pred CeEEeecCCCC--EEEEEEeeCCCEEEEec-C--C-CcEEEEeCCCC-----eeEEeecccCcEEEEEEccCCCEEEEe-
Q 042260 70 PVMSYDQHTNN--VMAVGFQCDGNWMYSGS-E--D-GTVKIWDLRAP-----VCQMEYESRAAVNTVVLHPNQTELISG- 137 (174)
Q Consensus 70 ~~~~~~~~~~~--v~~~~~~~~~~~l~t~~-~--d-g~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~- 137 (174)
-...+...... ...+..++++++++..+ . + ..+.+-|+... ...........+....-+.++.+.+..
T Consensus 216 d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn 295 (414)
T PF02897_consen 216 DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTN 295 (414)
T ss_dssp -EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-
T ss_pred CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeC
Confidence 33445444333 56778889999866432 2 2 45788888763 222222222333332323344443332
Q ss_pred --eCCCcEEEEeCCCCc
Q 042260 138 --DQNGNIRVWDLTANS 152 (174)
Q Consensus 138 --~~d~~i~iwd~~~~~ 152 (174)
..++.|.-.++....
T Consensus 296 ~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 296 DDAPNGRLVAVDLADPS 312 (414)
T ss_dssp TT-TT-EEEEEETTSTS
T ss_pred CCCCCcEEEEecccccc
Confidence 334567777777665
No 426
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.45 E-value=12 Score=28.26 Aligned_cols=94 Identities=13% Similarity=0.235 Sum_probs=58.6
Q ss_pred CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEec------CCCcEEEEeCCCCeeEEeec-----ccCcEE
Q 042260 55 NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGS------EDGTVKIWDLRAPVCQMEYE-----SRAAVN 123 (174)
Q Consensus 55 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~------~dg~v~iwd~~~~~~~~~~~-----~~~~v~ 123 (174)
...+++||....++..... .-.+.|..+.|..+.+.++.|. ....+..||+........-. -+.+|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 3468999998776654432 3457899999987777777764 46678999998765422112 135677
Q ss_pred EEEEcc-CC-CEEEEee-CCC--cEEEEeCCC
Q 042260 124 TVVLHP-NQ-TELISGD-QNG--NIRVWDLTA 150 (174)
Q Consensus 124 ~~~~~~-~~-~~l~s~~-~d~--~i~iwd~~~ 150 (174)
.+.+.. +. +..++|. .++ .|..||=..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 777743 23 3444443 333 466666543
No 427
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=85.50 E-value=5 Score=24.65 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=28.9
Q ss_pred ecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe
Q 042260 96 GSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 96 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 137 (174)
+..+|++.-||..+.+.......=.-.+.+++++++.+|+.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 456788999999988765544444567999999999987755
No 428
>PLN02153 epithiospecifier protein
Probab=85.03 E-value=15 Score=28.19 Aligned_cols=96 Identities=7% Similarity=0.059 Sum_probs=46.3
Q ss_pred cEEEEEcCCCCCCCeEEeec---CCCCEEEEEEeeCCCEEEEecCC-----------CcEEEEeCCCCeeEEeecc----
Q 042260 57 HIRLFDVNSSSPQPVMSYDQ---HTNNVMAVGFQCDGNWMYSGSED-----------GTVKIWDLRAPVCQMEYES---- 118 (174)
Q Consensus 57 ~i~i~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~t~~~d-----------g~v~iwd~~~~~~~~~~~~---- 118 (174)
.+.+||..+.++..+..+.. ........+...+++..+.|+.+ ..+.+||.++.........
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~ 181 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF 181 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC
Confidence 46788887765543322110 11111222223456677777653 2477788876544321111
Q ss_pred --cCcEEEEEEccCCCEEEEeeCC-------------CcEEEEeCCCCcce
Q 042260 119 --RAAVNTVVLHPNQTELISGDQN-------------GNIRVWDLTANSCS 154 (174)
Q Consensus 119 --~~~v~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~ 154 (174)
+.......+ ++...+.|+.+ ..+.+||+.+.+..
T Consensus 182 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 182 EKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred CCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 111122222 45554544421 35888998876544
No 429
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=84.67 E-value=14 Score=27.33 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCceEEEec--CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEe-CCCCee-
Q 042260 37 QVNRLEITPNKHYLAAAG--NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD-LRAPVC- 112 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd-~~~~~~- 112 (174)
.+...++++++..++... ++.-.+|-...+...... . ....+..-.|.+++...+....+...+++. ......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-L--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-c--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 577889999887665533 444444444433222111 1 223677778888877766666666666663 222211
Q ss_pred EEee--ccc-CcEEEEEEccCCCEEEEee---CCCcEEEEeCC
Q 042260 113 QMEY--ESR-AAVNTVVLHPNQTELISGD---QNGNIRVWDLT 149 (174)
Q Consensus 113 ~~~~--~~~-~~v~~~~~~~~~~~l~s~~---~d~~i~iwd~~ 149 (174)
.... ... ..|..+.++|++..++... .++.|.+=-+.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 1111 111 2899999999999877544 34667776655
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.65 E-value=14 Score=27.36 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=56.8
Q ss_pred EEEEEcCCCceEEE--ecCCcEEEEE--cCCCCC---CCeEEeec----CCCCEEEEEEeeCCCEEEEecCCCcEEEEeC
Q 042260 39 NRLEITPNKHYLAA--AGNPHIRLFD--VNSSSP---QPVMSYDQ----HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107 (174)
Q Consensus 39 ~~~~~~~~~~~~~~--~~d~~i~i~d--~~~~~~---~~~~~~~~----~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~ 107 (174)
++++|+.+.+.+.. +.+..+.-|| ..++.. +.+..+.. ....--.+++.-.|++.+++-+.++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 46778765554433 3455676677 444321 11222211 1111223444557899999999999999999
Q ss_pred CCCeeEEeecc-cCcEEEEEEcc
Q 042260 108 RAPVCQMEYES-RAAVNTVVLHP 129 (174)
Q Consensus 108 ~~~~~~~~~~~-~~~v~~~~~~~ 129 (174)
.+++...++.. ...|.+++|--
T Consensus 241 ~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecC
Confidence 99998887764 46789999953
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.11 E-value=11 Score=27.25 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=32.5
Q ss_pred cCCCcEEEEeCCCCe--eEEeecccCcEEEEEEccCCCEEEEe
Q 042260 97 SEDGTVKIWDLRAPV--CQMEYESRAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 97 ~~dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~ 137 (174)
...+.|.+|++.... ...+|..-+.|..++++..|.+|++-
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence 566789999998433 34566667889999999999999984
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.93 E-value=4.6 Score=33.14 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcC
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVN 64 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~ 64 (174)
+-.+.++|.||.-|.||+||.-.-...-.+..-...|-.+..+.+|+.+.+.-...+-+-|++
T Consensus 570 tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 570 TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 345668999999999999995432222223333456888888888887655444556666653
No 433
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.38 E-value=4.7 Score=20.17 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=23.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYP 34 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~ 34 (174)
+.++++...+++|.++|..+++.+..+...
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 456677777899999999998888777653
No 434
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.14 E-value=4 Score=19.27 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=19.7
Q ss_pred EEEEeeCCCcEEEEECCCCceeEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRT 30 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~ 30 (174)
.+..++.++.+..+|.++|+.+-.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577788899999999999887643
No 435
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.07 E-value=14 Score=33.37 Aligned_cols=145 Identities=10% Similarity=0.092 Sum_probs=86.0
Q ss_pred EEEEeeCCCcEEEEECCC-------Cc---------eeEEeecC-CCCeEEEEEcCCCceEEE---ecCCcEEEEEcCCC
Q 042260 7 ILATASYDKTIKFWEAKS-------GR---------CYRTIQYP-DSQVNRLEITPNKHYLAA---AGNPHIRLFDVNSS 66 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~-------~~---------~~~~~~~~-~~~v~~~~~~~~~~~~~~---~~d~~i~i~d~~~~ 66 (174)
+++.+++.+.+.++-..+ +. +...++.+ +.++..+...++..+.+. ..+..|..||++.-
T Consensus 55 l~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~f 134 (1405)
T KOG3630|consen 55 LFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEF 134 (1405)
T ss_pred eEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhh
Confidence 566777777777774321 10 11222222 334566666666554322 23335789998643
Q ss_pred CCCC---eEEeecC------CCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeE-EeecccCcEEEEEEccCCCEEE
Q 042260 67 SPQP---VMSYDQH------TNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQ-MEYESRAAVNTVVLHPNQTELI 135 (174)
Q Consensus 67 ~~~~---~~~~~~~------~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~ 135 (174)
.... ...+..| .....++.|+|. ....+.+..|+.|++..+...... ..+.......+++|+|-|..++
T Consensus 135 s~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~ 214 (1405)
T KOG3630|consen 135 SESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLF 214 (1405)
T ss_pred hhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceee
Confidence 2111 1111112 234556667763 334566788999998877653322 2234556789999999999999
Q ss_pred EeeCCCcEEEEeCCCC
Q 042260 136 SGDQNGNIRVWDLTAN 151 (174)
Q Consensus 136 s~~~d~~i~iwd~~~~ 151 (174)
.|-.+|++.-|...-.
T Consensus 215 iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 215 IGRNNGTEVQYEPSLE 230 (1405)
T ss_pred EecCCCeEEEeecccc
Confidence 9999999988876643
No 436
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.92 E-value=21 Score=27.30 Aligned_cols=142 Identities=10% Similarity=0.119 Sum_probs=77.8
Q ss_pred CcEEEEECCCC-ceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEE--------------------EEcCCCCCCCeEE
Q 042260 15 KTIKFWEAKSG-RCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRL--------------------FDVNSSSPQPVMS 73 (174)
Q Consensus 15 ~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i--------------------~d~~~~~~~~~~~ 73 (174)
|.|-|||.+.+ +.+.++..+.-.-..+.+.+++..++... +.|+. .|..++......+
T Consensus 140 GViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan-GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~ 218 (366)
T COG3490 140 GVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT 218 (366)
T ss_pred ceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC-CceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence 55888887643 34555555544456777888888777652 22332 2323333222222
Q ss_pred ee--cCCCCEEEEEEeeCCCEEEEecCCCcE-----EEEeCCCCeeEEeec--------ccCcEEEEEEccCCCEEEEee
Q 042260 74 YD--QHTNNVMAVGFQCDGNWMYSGSEDGTV-----KIWDLRAPVCQMEYE--------SRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 74 ~~--~~~~~v~~~~~~~~~~~l~t~~~dg~v-----~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~ 138 (174)
+. .+...+..++..++|+..+.+...|.- .+=-.+..+....+. ...-|-+++.+.....++..+
T Consensus 219 Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTS 298 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTS 298 (366)
T ss_pred CchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEec
Confidence 22 344567777777777766655443311 000001111111111 123477888887777776555
Q ss_pred C-CCcEEEEeCCCCcceeec
Q 042260 139 Q-NGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 139 ~-d~~i~iwd~~~~~~~~~~ 157 (174)
- .+..-+||..++..+.+-
T Consensus 299 P~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 299 PRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred CCCCeEEEEEcCCCcEEecc
Confidence 4 456789999999887664
No 437
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=79.66 E-value=26 Score=26.96 Aligned_cols=12 Identities=8% Similarity=0.349 Sum_probs=8.5
Q ss_pred CcEEEEECCCCc
Q 042260 15 KTIKFWEAKSGR 26 (174)
Q Consensus 15 ~~v~vwd~~~~~ 26 (174)
..+..||..+++
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 467888877654
No 438
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.44 E-value=8 Score=28.58 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=36.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN 46 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 46 (174)
++.+.++.=+-++|...|..+|+.+.+++.+..++++++|-.-
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 3556777777889999999999999999999889999999643
No 439
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.58 E-value=35 Score=27.91 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=67.9
Q ss_pred CeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEe-ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe
Q 042260 37 QVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME 115 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~ 115 (174)
+-+.+-|...++.+.+...+++.-|-...........+ ....+.+.++.|++|.+.+|--..|.+|.+++.........
T Consensus 24 esngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 24 ESNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 34566677767776666566677776654433332222 23467899999999999999999999999998843322211
Q ss_pred e----ccc-CcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 116 Y----ESR-AAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 116 ~----~~~-~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
. ..+ ..|...+|..+ ..+|..+..| +-+|-..
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence 1 122 33777777655 3344443332 4444443
No 440
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=78.39 E-value=28 Score=26.76 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=66.5
Q ss_pred eEEEEEcCCCceEEEe-cCCcEEEEEcCCC-----CCCCeEEeec-----CCCCEEEEEEeeCCC------------EEE
Q 042260 38 VNRLEITPNKHYLAAA-GNPHIRLFDVNSS-----SPQPVMSYDQ-----HTNNVMAVGFQCDGN------------WMY 94 (174)
Q Consensus 38 v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~-----~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~ 94 (174)
-+.++++|.+.+.++. +.+...+||.... .......... .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4789999988877664 5667899998621 1112222221 123566777764333 367
Q ss_pred EecCCCcEEEEeCCCCe-----eEEeecc--cCc-EEEEEEcc--CCCEEEEee-CCCcEEEEeCCCC
Q 042260 95 SGSEDGTVKIWDLRAPV-----CQMEYES--RAA-VNTVVLHP--NQTELISGD-QNGNIRVWDLTAN 151 (174)
Q Consensus 95 t~~~dg~v~iwd~~~~~-----~~~~~~~--~~~-v~~~~~~~--~~~~l~s~~-~d~~i~iwd~~~~ 151 (174)
.+++||+|.-|...-.. ....+.. ... -..+++.. .+.+|..+- .+++|.++|-.-.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 78899999999853211 1122221 222 34555543 356666554 4788999887744
No 441
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=78.27 E-value=20 Score=24.80 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=25.3
Q ss_pred CcEEEEEEccCC-----C-EEEEeeCCCcEEEEeCCCC
Q 042260 120 AAVNTVVLHPNQ-----T-ELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 120 ~~v~~~~~~~~~-----~-~l~s~~~d~~i~iwd~~~~ 151 (174)
..+..++|+|.| + .|++-+.++.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999854 2 4677889999999987754
No 442
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.16 E-value=46 Score=29.07 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=21.7
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeec
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQY 33 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~ 33 (174)
.|..++.++.|.-.|.++|+.+-.+..
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcC
Confidence 466777788999999999998777653
No 443
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=77.63 E-value=40 Score=27.99 Aligned_cols=108 Identities=12% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCceEEEecCCcEEEEEcCCCCCCCeEEeecCC-CCEE----------EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE
Q 042260 46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT-NNVM----------AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM 114 (174)
Q Consensus 46 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~ 114 (174)
++.+++++.++.+.-.|..+++. +-.+.... ..+. .+++ .+..++.++.|+.+.-.|.++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~--lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE--LWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce--eeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 34555555667777778777642 11111100 0010 1122 23456677889999999998888765
Q ss_pred eeccc-----CcEEEEEEccCCCEEEEee------CCCcEEEEeCCCCcceeecC
Q 042260 115 EYESR-----AAVNTVVLHPNQTELISGD------QNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 115 ~~~~~-----~~v~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~ 158 (174)
.+... ..+.+--...++ .|+.+. .+|.|.-+|.++++.+++..
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 54321 111111111133 455443 26889999999999887753
No 444
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=76.64 E-value=45 Score=28.12 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=62.4
Q ss_pred EEEEeeCCCcEEEEECC-----CCceeEEeecC---CCCe--EEEEEcCCCceEEEecCCcE-EEEEcCCCCCCCeEEee
Q 042260 7 ILATASYDKTIKFWEAK-----SGRCYRTIQYP---DSQV--NRLEITPNKHYLAAAGNPHI-RLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~-----~~~~~~~~~~~---~~~v--~~~~~~~~~~~~~~~~d~~i-~i~d~~~~~~~~~~~~~ 75 (174)
.|++...-+.|-||.+. +++.+.+...+ .-++ .++.|+|...+++.-....+ -+++++..........
T Consensus 74 aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi- 152 (671)
T PF15390_consen 74 ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI- 152 (671)
T ss_pred ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-
Confidence 46677888999999864 34444443322 1223 47889998887765433333 4456655433333333
Q ss_pred cCCCCEEEEEEeeCCCEEEE-ecCCCcEEEEeCC
Q 042260 76 QHTNNVMAVGFQCDGNWMYS-GSEDGTVKIWDLR 108 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t-~~~dg~v~iwd~~ 108 (174)
...+.|.+.+|.++|..++- .++.=.-.+||-.
T Consensus 153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 34578999999999886544 4444457789854
No 445
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=76.21 E-value=37 Score=26.96 Aligned_cols=144 Identities=15% Similarity=0.231 Sum_probs=70.2
Q ss_pred cEEEEEeeCCCcEEEE--ECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASYDKTIKFW--EAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.++|..+..|+.-.+| |+++++..+-.........+..+++.+..++ .-.+..++-.|+++.+...+ +.....-+
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v--y~~p~~~~ 125 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV--YEVPDDWK 125 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE--EE--TTEE
T ss_pred CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE--EECCcccc
Confidence 4677777777775554 7888876665554322222344556555543 33456788888887654333 33344444
Q ss_pred EEEEEe--eCCCEEEEec----------------------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEE-
Q 042260 82 MAVGFQ--CDGNWMYSGS----------------------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELIS- 136 (174)
Q Consensus 82 ~~~~~~--~~~~~l~t~~----------------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s- 136 (174)
-...|. .++..++-.- ....|.--|+++++....+....-+.-+.|+|....++.
T Consensus 126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 334443 3444433221 122344445555555555555666788899998776665
Q ss_pred ---eeCCC-cEEEEeCCC
Q 042260 137 ---GDQNG-NIRVWDLTA 150 (174)
Q Consensus 137 ---~~~d~-~i~iwd~~~ 150 (174)
|-.+. .-|||=++.
T Consensus 206 CHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 206 CHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp EE-S-TTTSS-SEEEEET
T ss_pred eccCCcceeceEEEEEEc
Confidence 33344 258888874
No 446
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=76.21 E-value=31 Score=26.08 Aligned_cols=135 Identities=17% Similarity=0.410 Sum_probs=71.1
Q ss_pred CcEEEEECCCCceeEEeecC------CCCeEEEEEcCCC-----ceEEEe--cCCcEEEEEcCCCCCCCeEE--------
Q 042260 15 KTIKFWEAKSGRCYRTIQYP------DSQVNRLEITPNK-----HYLAAA--GNPHIRLFDVNSSSPQPVMS-------- 73 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-----~~~~~~--~d~~i~i~d~~~~~~~~~~~-------- 73 (174)
..|.+||+++++.++.+..+ .+....+.+.... .++..+ +...+-++|+.+++...+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 46889999999998888654 3446677776521 233333 45679999998763211110
Q ss_pred ---ee------cCCCCEEEEEEee---CCCEEEEecCCCcEEEEeCC-----CCe---------eEEeecc-cCcEEEEE
Q 042260 74 ---YD------QHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLR-----APV---------CQMEYES-RAAVNTVV 126 (174)
Q Consensus 74 ---~~------~~~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~-----~~~---------~~~~~~~-~~~v~~~~ 126 (174)
+. .....+.+++.++ +++.++-+.-.+ -++|.+. .+. ....+.. ......++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 00 0012244444433 333333332211 1112211 110 0111112 23556788
Q ss_pred EccCCCEEEEeeCCCcEEEEeCCC
Q 042260 127 LHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
++++|+..++--+...|..||...
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTT
T ss_pred ECCCCcEEEecCCCCeEEEEeCCC
Confidence 888888888888888999999987
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.25 E-value=47 Score=27.22 Aligned_cols=100 Identities=8% Similarity=0.194 Sum_probs=56.0
Q ss_pred CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeec--CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC
Q 042260 34 PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQ--HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP 110 (174)
Q Consensus 34 ~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~ 110 (174)
..++|.++.|+++++.++.- .+..+.++.....+........+ ....+.+..|..+ ..+|.-...| +.+|-....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 35689999999999988775 57788887774433333322222 2344677777654 4455544443 444443221
Q ss_pred e--eEEeecccCcEEEEEEccCCCEEE
Q 042260 111 V--CQMEYESRAAVNTVVLHPNQTELI 135 (174)
Q Consensus 111 ~--~~~~~~~~~~v~~~~~~~~~~~l~ 135 (174)
+ ......+...|+=.++.|+.+.++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEe
Confidence 1 111112345566666777666543
No 448
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=73.58 E-value=9.6 Score=18.94 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.1
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecC
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYP 34 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~ 34 (174)
+..+..||.+.-.|.++|+.+-.++..
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 445599999999999999988777643
No 449
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=73.09 E-value=43 Score=26.24 Aligned_cols=12 Identities=0% Similarity=0.216 Sum_probs=8.3
Q ss_pred cEEEEECCCCce
Q 042260 16 TIKFWEAKSGRC 27 (174)
Q Consensus 16 ~v~vwd~~~~~~ 27 (174)
.+.+||..+++-
T Consensus 190 ~v~~YD~~t~~W 201 (376)
T PRK14131 190 EVLSYDPSTNQW 201 (376)
T ss_pred eEEEEECCCCee
Confidence 478888776543
No 450
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=72.32 E-value=19 Score=21.91 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=32.7
Q ss_pred CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCC
Q 042260 99 DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTA 150 (174)
Q Consensus 99 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~ 150 (174)
-+.|..||....+ .....-...+.|.++|+++.|..++ ..+.|.+|+...
T Consensus 35 ~~~Vvyyd~~~~~--~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 35 WGNVVYYDGKEVK--VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEEeCCEeE--EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3456666654322 2222234568899999999887665 467899998764
No 451
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=70.92 E-value=43 Score=25.35 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=54.0
Q ss_pred CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-------CCcEEEEEcCCCCCCCeEE-e-ecCCCCEEEE
Q 042260 14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-------NPHIRLFDVNSSSPQPVMS-Y-DQHTNNVMAV 84 (174)
Q Consensus 14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~-~-~~~~~~v~~~ 84 (174)
-..|.+||..+.+-..--..=.+.|..+.|..++.+++++. ...+..||+....+..... . +.-.+++..+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 44599999876554322222245689999986666666552 2347789987765433322 1 1223667777
Q ss_pred EEee-CC-CEEEEec-C--CCcEEEEeCCC
Q 042260 85 GFQC-DG-NWMYSGS-E--DGTVKIWDLRA 109 (174)
Q Consensus 85 ~~~~-~~-~~l~t~~-~--dg~v~iwd~~~ 109 (174)
.+.. ++ ++.++|. . +..+..||=.+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 6542 33 3444443 2 33567777443
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=69.60 E-value=2.6 Score=36.77 Aligned_cols=81 Identities=11% Similarity=0.231 Sum_probs=49.2
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccC-----------cEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-----------AVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
|..+-|-++.-++..+-.++.+++-.+.+........|.. .+.--.++|+|..++.++.||.+++|.+.
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 4444455566677778888888876654322110001111 11222378999999999999998888776
Q ss_pred -----CCcceeecCccc
Q 042260 150 -----ANSCSCELGLQY 161 (174)
Q Consensus 150 -----~~~~~~~~~~~~ 161 (174)
..+|..+|....
T Consensus 266 i~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeccccHhhhhccCCCC
Confidence 446766664333
No 453
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=69.56 E-value=10 Score=17.50 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=15.2
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEE
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKI 104 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~i 104 (174)
..+++..++|+.+++-+..+.|.+
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEE
Confidence 345666666777776666666654
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=69.34 E-value=51 Score=25.50 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=59.3
Q ss_pred CCCeEEEEEcCCCceEEEecCCcEEEEEcCCC-CCCCeEEe-ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee
Q 042260 35 DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS-SPQPVMSY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC 112 (174)
Q Consensus 35 ~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~ 112 (174)
...+..+.+.+++.+++.+..+.+++=.-+.+ ........ ......+.++.+.+++..++. +.+|.+. ......+.
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~t 291 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKT 291 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCC
Confidence 34578888888888777666665543222222 11211110 011234677888887765554 4556544 23332221
Q ss_pred EEee----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 113 QMEY----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 113 ~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
-... ........+.+..++..++ ++..|.|.-|+-.
T Consensus 292 W~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 292 WEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred CeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecCC
Confidence 1111 1123577788776666555 5567888777644
No 455
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=69.34 E-value=49 Score=25.35 Aligned_cols=134 Identities=13% Similarity=0.228 Sum_probs=66.0
Q ss_pred CCCCeEEEEEcCCCceEEEecCCcE-EEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee
Q 042260 34 PDSQVNRLEITPNKHYLAAAGNPHI-RLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC 112 (174)
Q Consensus 34 ~~~~v~~~~~~~~~~~~~~~~d~~i-~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~ 112 (174)
....+..+.-.+++.+++.+..+.+ .-||--.....+.. ......+..+.|.+++.....+ ..|.++.=+......
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3455777778889998888776654 56665322222221 1245789999999998765544 888888776221111
Q ss_pred EEe-----e-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-ceee---cCcccceeEEEEEeec
Q 042260 113 QME-----Y-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS-CSCE---LGLQYGLRTFLFYHQD 172 (174)
Q Consensus 113 ~~~-----~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~---~~~~~~~~~~~~~~~~ 172 (174)
... . .....+.++++.++....++|+.. .+ +.....++ ...+ ...+.++.+..|.+++
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCC
Confidence 111 1 123458999999887777766554 22 22222222 1111 1346677888887764
No 456
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=68.81 E-value=12 Score=32.39 Aligned_cols=68 Identities=12% Similarity=0.226 Sum_probs=39.5
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
..-+.++.-.|.+.-++++..||.+++++.-.....+......|-..+.|...| |.+.++|+.+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 345677777788999999999999999997543322212222222334443222 44444555544443
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=66.82 E-value=55 Score=24.93 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=35.4
Q ss_pred CCCEEEEecC-----CCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCC----cEEEEeCCCCcce
Q 042260 89 DGNWMYSGSE-----DGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNG----NIRVWDLTANSCS 154 (174)
Q Consensus 89 ~~~~l~t~~~-----dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~ 154 (174)
+++..+.|+. ...+..||+.+......- ....+....+...++...+.|+.++ .+..||.++.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 5666666664 235788888765433221 1111222222233566667777653 2567888876643
No 458
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=66.51 E-value=23 Score=21.74 Aligned_cols=46 Identities=7% Similarity=0.087 Sum_probs=27.1
Q ss_pred eeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCc
Q 042260 11 ASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPH 57 (174)
Q Consensus 11 ~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~ 57 (174)
+..+|.+.-||..+++...-... -...+++++++++.++..+....
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccC
Confidence 34467778888887765322221 12468899999988777765443
No 459
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=66.49 E-value=53 Score=24.66 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=66.6
Q ss_pred CeEEEEEcCCCceEEE-ecCC--cEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE
Q 042260 37 QVNRLEITPNKHYLAA-AGNP--HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ 113 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~ 113 (174)
...++.|..++.++-+ +.-+ .++.+|+.+++......++. ..--..+... +++...-.=.++...+||..+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 3567888566666544 4333 58999998875433333322 2223333333 2334444556889999999998888
Q ss_pred EeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 114 MEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.++.....=..++. ++..|+.......+.++|..+.+...++
T Consensus 124 ~~~~y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 124 GTFPYPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp EEEE-SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred EEEecCCcceEEEc--CCCEEEEECCccceEEECCcccceEEEE
Confidence 77765555566663 4555554433457999998876655444
No 460
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.09 E-value=49 Score=24.16 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=54.9
Q ss_pred CcEEEEEeeCCC--cEEEEECCCCceeEEeecCCCCeE--EEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 4 PSVILATASYDK--TIKFWEAKSGRCYRTIQYPDSQVN--RLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~--~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+++++.+.+.=| .|++||+.+|+.+.+.+.....+- ++.-..+..+..+-.++....+|.++-+......++ +
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---G 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC---C
Confidence 456777766533 499999999999887765422221 121112222333445666677787654322222222 3
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~ 109 (174)
.-..++ .+++.+..+.....+..-|.++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHH
Confidence 334444 3556677766666777666543
No 461
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=65.58 E-value=70 Score=25.76 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=23.6
Q ss_pred CCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEE
Q 042260 90 GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVL 127 (174)
Q Consensus 90 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~ 127 (174)
...++-|-.+|.|++|...........-+..+|..+.+
T Consensus 79 w~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 79 WTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred cEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEe
Confidence 45789999999999998754322222233444444444
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=65.21 E-value=70 Score=25.59 Aligned_cols=108 Identities=6% Similarity=0.099 Sum_probs=58.6
Q ss_pred CCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCC---CeEEeec--CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC
Q 042260 35 DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ---PVMSYDQ--HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 35 ~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~ 109 (174)
...+..+.+.+++.++..+.++.+. +....+..- ....... ....+.++.+.+++..++ ++..|.+.... ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CC
Confidence 3457788888888888777666544 333232111 1111111 123478888887666554 45666665543 22
Q ss_pred Cee-EEee---cccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260 110 PVC-QMEY---ESRAAVNTVVLHPNQTELISGDQNGNIRVW 146 (174)
Q Consensus 110 ~~~-~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 146 (174)
.+. .... .-......+.|.+++.-+++ +.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 221 1111 11345778888776554554 567777655
No 463
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=64.84 E-value=14 Score=17.26 Aligned_cols=25 Identities=8% Similarity=0.340 Sum_probs=18.7
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 121 AVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 121 ~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
.|.+++. ....++.+.+-+.+|+|.
T Consensus 3 ~i~aia~--g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAA--GDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEc--cCCEEEEEeCCCeEEecC
Confidence 4666666 446888888889999873
No 464
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.43 E-value=17 Score=31.55 Aligned_cols=35 Identities=14% Similarity=0.370 Sum_probs=29.3
Q ss_pred ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 118 SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 118 ~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
....+.++.-+|.+..+++++.||.|++|+....+
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 34557788889999999999999999999987654
No 465
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=63.88 E-value=75 Score=25.51 Aligned_cols=96 Identities=8% Similarity=0.238 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCCCCeEEeecCCCCEEEEEEee----CCCEEEEecCCCcEEEEeCCCCee----EE--------ee---c
Q 042260 57 HIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQC----DGNWMYSGSEDGTVKIWDLRAPVC----QM--------EY---E 117 (174)
Q Consensus 57 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~t~~~dg~v~iwd~~~~~~----~~--------~~---~ 117 (174)
.+.+|++.+++......+......+..+.|-. +.-+..++..++..+++....... +. .. +
T Consensus 230 ~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~kv~~w~~~e 309 (476)
T KOG0918|consen 230 HLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLKVENWILPE 309 (476)
T ss_pred eeEEEecCCccceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccccccccCcc
Confidence 46788887765544444433344455666542 233555556666777665433110 00 01 1
Q ss_pred ccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCCCc
Q 042260 118 SRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTANS 152 (174)
Q Consensus 118 ~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~ 152 (174)
.+.-|+++.++-++++|.... -.|.||-||++.+.
T Consensus 310 MP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~ 345 (476)
T KOG0918|consen 310 MPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPK 345 (476)
T ss_pred cchhhheeEEeecCcEEEEEeeeecceeeeccCCCC
Confidence 234589999999999987665 48889999999764
No 466
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=62.87 E-value=84 Score=28.15 Aligned_cols=138 Identities=15% Similarity=0.313 Sum_probs=72.0
Q ss_pred eCCCcEEEEECCCCceeEEeecCCCCeEEE-EEcCCC--------ceEEEecCCcEEEEEc----CCCCCCCeE---Eee
Q 042260 12 SYDKTIKFWEAKSGRCYRTIQYPDSQVNRL-EITPNK--------HYLAAAGNPHIRLFDV----NSSSPQPVM---SYD 75 (174)
Q Consensus 12 s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~-~~~~~~--------~~~~~~~d~~i~i~d~----~~~~~~~~~---~~~ 75 (174)
..|..+.+|+.+++++.+.+..-...|..+ .+.|.. +++..+....+.++-+ ++++..... ...
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl~vs 178 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGLVVS 178 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecceEEe
Confidence 357889999999877655543322223332 233321 2222222333444332 222211110 011
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC--------eeEE-------------e---e-cccCcEEEEEEccC
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--------VCQM-------------E---Y-ESRAAVNTVVLHPN 130 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--------~~~~-------------~---~-~~~~~v~~~~~~~~ 130 (174)
...-.|.++....+|+.+.+|-.| +.+|.+.-. +|.+ + + -++..|..+++...
T Consensus 179 vqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqs 256 (1263)
T COG5308 179 VQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQS 256 (1263)
T ss_pred ccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeeccc
Confidence 223567777766789999988888 788886321 1100 0 0 12345666777655
Q ss_pred CCEEEEeeCCCcEEEEeCCCC
Q 042260 131 QTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 131 ~~~l~s~~~d~~i~iwd~~~~ 151 (174)
...+.+-.....||-|-+...
T Consensus 257 Rg~ly~Lr~kS~Vray~itkn 277 (1263)
T COG5308 257 RGLLYVLRKKSAVRAYSITKN 277 (1263)
T ss_pred ccceeeecccceeeeEeeecc
Confidence 556666666667777777654
No 467
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=62.02 E-value=72 Score=24.63 Aligned_cols=139 Identities=18% Similarity=0.274 Sum_probs=79.9
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCC-CeEEeecCCCCEEE
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQ-PVMSYDQHTNNVMA 83 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~-~~~~~~~~~~~v~~ 83 (174)
...+.++.-+++.|+.+......... -+.-..++.. .|.+... ..+..+.+.|+.+.+.. ..-.+.........
T Consensus 99 vyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~ 176 (370)
T COG5276 99 VYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHD 176 (370)
T ss_pred EEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCcee
Confidence 44455566688888766543222211 1122334444 3444433 34777888999765422 22223334444556
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCC---eeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAP---VCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
++.+ |++-+-+..|+-+.+-|+..+ ..+........+.++..+++.-+++... .-+.+-|....+
T Consensus 177 v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~s 244 (370)
T COG5276 177 VAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPS 244 (370)
T ss_pred EEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCC
Confidence 6664 566666678888999998654 3444445555778888877666555443 347777777665
No 468
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=61.97 E-value=72 Score=24.62 Aligned_cols=101 Identities=16% Similarity=0.220 Sum_probs=52.7
Q ss_pred eEEEEEcCCCceEEEecCCcEEEEEcCCCCC-CCeEEe----ecCCCCEEEEEEeeC----CCEEEEecC------CC--
Q 042260 38 VNRLEITPNKHYLAAAGNPHIRLFDVNSSSP-QPVMSY----DQHTNNVMAVGFQCD----GNWMYSGSE------DG-- 100 (174)
Q Consensus 38 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~----~~~~~~v~~~~~~~~----~~~l~t~~~------dg-- 100 (174)
-+.++|.|++.++++-..+.|++++. .+.. ..+... .........+++.|+ +.+.+..+. +.
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 57899999999888877888888883 3322 112211 123456889999884 333333331 11
Q ss_pred cEEEEeCCCC-------eeEE-eec----ccCcEEEEEEccCCCEEEEeeC
Q 042260 101 TVKIWDLRAP-------VCQM-EYE----SRAAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 101 ~v~iwd~~~~-------~~~~-~~~----~~~~v~~~~~~~~~~~l~s~~~ 139 (174)
.|.=|..... +.+. ... .......++|.|++.+.++.+.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 2222322221 1111 111 2345678999999977666543
No 469
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=61.81 E-value=75 Score=24.82 Aligned_cols=100 Identities=8% Similarity=0.086 Sum_probs=53.5
Q ss_pred CeEEEEEcCCCceEEEec------------C-CcEEEEEcCC--CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCc
Q 042260 37 QVNRLEITPNKHYLAAAG------------N-PHIRLFDVNS--SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT 101 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~~~~------------d-~~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~ 101 (174)
....++|.+++.++++.. . +.|.+++-.. +.......+.........+++.+++ ++++ +....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeE
Confidence 356788888888776631 1 2455554322 2222222333334456788888888 5554 34433
Q ss_pred EEEEeCCC-------CeeE-Eeecc-----cCcEEEEEEccCCCEEEEee
Q 042260 102 VKIWDLRA-------PVCQ-MEYES-----RAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 102 v~iwd~~~-------~~~~-~~~~~-----~~~v~~~~~~~~~~~l~s~~ 138 (174)
.++.|... .+.+ ..+.. ....+.+++.|++.+.++-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44445532 1111 12222 23478899999998766544
No 470
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=61.31 E-value=92 Score=25.66 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=58.3
Q ss_pred eEEEecCCcEEEE-EcCCCCCCCe---EEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEE
Q 042260 49 YLAAAGNPHIRLF-DVNSSSPQPV---MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNT 124 (174)
Q Consensus 49 ~~~~~~d~~i~i~-d~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~ 124 (174)
+++...|+.+.-| |.+....... ..++-....+..+.-..+.+-+++=+..|++.++.....+.......-..+.-
T Consensus 283 LLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~ 362 (733)
T COG4590 283 LLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQL 362 (733)
T ss_pred EEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcce
Confidence 4555667777655 5543321111 11111112233332222445577778888888876655443332233346778
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 125 VVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
++++|++..+++- ..|.|+++.+++.
T Consensus 363 ~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 363 VAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred eeeCcccchheee-cCCceEEEEecCC
Confidence 8999999988865 3467999998875
No 471
>PLN02193 nitrile-specifier protein
Probab=61.06 E-value=89 Score=25.43 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCCCCeEEe---ecCCCCEEEEEEeeCCCEEEEecCCC-----cEEEEeCCCCeeEEeec------ccCcE
Q 042260 57 HIRLFDVNSSSPQPVMSY---DQHTNNVMAVGFQCDGNWMYSGSEDG-----TVKIWDLRAPVCQMEYE------SRAAV 122 (174)
Q Consensus 57 ~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~------~~~~v 122 (174)
.+..||+.+.++..+... +..+... ++ ..-+++.++.|+.++ .+..||+.+........ .+...
T Consensus 245 dv~~yD~~t~~W~~l~~~~~~P~~R~~h-~~-~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~ 322 (470)
T PLN02193 245 GFYSFDTTTNEWKLLTPVEEGPTPRSFH-SM-AADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA 322 (470)
T ss_pred cEEEEECCCCEEEEcCcCCCCCCCccce-EE-EEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc
Confidence 477888877655433222 1111211 12 223566677776543 46677876654322111 01111
Q ss_pred EEEEEccCCCEEEEeeCC----CcEEEEeCCCCcce
Q 042260 123 NTVVLHPNQTELISGDQN----GNIRVWDLTANSCS 154 (174)
Q Consensus 123 ~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~ 154 (174)
.... .++...+.++.+ ..+.+||+.+.+..
T Consensus 323 ~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 323 GLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred EEEE--ECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 1222 245666666654 35889999887654
No 472
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=60.86 E-value=1.3e+02 Score=27.20 Aligned_cols=101 Identities=11% Similarity=0.092 Sum_probs=54.7
Q ss_pred ceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC---CC---EEEEecCCCcEEEEe-CCCCeeEEeecc--
Q 042260 48 HYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD---GN---WMYSGSEDGTVKIWD-LRAPVCQMEYES-- 118 (174)
Q Consensus 48 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~---~l~t~~~dg~v~iwd-~~~~~~~~~~~~-- 118 (174)
..++++++..+...++...+..... .......+.|+.++|- .+ +++-|.++..+.+-- ......+.....
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~-~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~ 579 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVS-HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG 579 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeee-eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC
Confidence 4444555555555566544321111 1123467888888863 22 677777766544433 222222222211
Q ss_pred ---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 119 ---RAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 119 ---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
+..|.-.++-.+..+|.++..||.+.-+.+.
T Consensus 580 ~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 580 EIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred CccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 2345555555557789999999987665554
No 473
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=60.81 E-value=92 Score=25.49 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=23.8
Q ss_pred EEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 122 VNTVVLHPNQ-TELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 122 v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
++++.+.+.. ..++|+=....|-..|.+++...+-+.
T Consensus 273 ~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 273 INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred cCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 8999999944 445554444578888888887776543
No 474
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=58.51 E-value=84 Score=24.32 Aligned_cols=72 Identities=11% Similarity=0.213 Sum_probs=48.8
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCC------CC-eeEEeec------ccCcEEEEEEccCCCE-----------
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR------AP-VCQMEYE------SRAAVNTVVLHPNQTE----------- 133 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~------~~-~~~~~~~------~~~~v~~~~~~~~~~~----------- 133 (174)
-..-+.++++|.+-+-++....+...+||.. .+ ..+.++. .....+.+.|+....+
T Consensus 22 L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 22 LRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 3456788999888888888888899999986 11 2223332 1234667777654443
Q ss_pred -EEEeeCCCcEEEEeCC
Q 042260 134 -LISGDQNGNIRVWDLT 149 (174)
Q Consensus 134 -l~s~~~d~~i~iwd~~ 149 (174)
++.+++||+|.=|.-.
T Consensus 102 ~Fif~tEdGTisaW~p~ 118 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPA 118 (336)
T ss_pred eEEEEeCCceEEeecCc
Confidence 4567899999999853
No 475
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=58.15 E-value=87 Score=24.37 Aligned_cols=145 Identities=12% Similarity=0.147 Sum_probs=71.5
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCC--CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCC-CCEEEE
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPD--SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT-NNVMAV 84 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~v~~~ 84 (174)
+..+..||.+.-.|.+++..+-...... ..+..-.+..+|+++++..++.+..+|.++++. .-..+... ......
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~--~W~~~~~~~~~~~~~ 148 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTL--VWSRNVGGSPYYASP 148 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcE--EEEEecCCCeEEecC
Confidence 4455788888888988888653332221 122221222267777777788777777765532 22222222 112222
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCc----EEEEEEccCCCEEEEeeC--CCcEEEEeCCCCcceee
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA----VNTVVLHPNQTELISGDQ--NGNIRVWDLTANSCSCE 156 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~ 156 (174)
....++ .++.++.++.+.-.|-.+......++...+ +..-.. .....+..+.. ++.+.=.|++++...++
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeee
Confidence 222233 334444667777777766655444332211 111000 12233444444 44455556666665555
No 476
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=57.48 E-value=97 Score=24.69 Aligned_cols=104 Identities=16% Similarity=0.230 Sum_probs=65.5
Q ss_pred EEEEEeeCCCcEEEEECC---CC----ceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCC-CCeEE--e
Q 042260 6 VILATASYDKTIKFWEAK---SG----RCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSP-QPVMS--Y 74 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~-~~~~~--~ 74 (174)
.+.+..+.+|.+.-|.+. .| +.++.+... +++..++.......+..+ .+..|.-|+.+.... ..... .
T Consensus 172 ~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~ 250 (381)
T PF02333_consen 172 LYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA 250 (381)
T ss_dssp EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB
T ss_pred EEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc
Confidence 456778888988888763 23 356777654 479999998876666555 566677777764321 22211 1
Q ss_pred e--cCCCCEEEEEEee--C--CCEEEEecCCCcEEEEeCCCC
Q 042260 75 D--QHTNNVMAVGFQC--D--GNWMYSGSEDGTVKIWDLRAP 110 (174)
Q Consensus 75 ~--~~~~~v~~~~~~~--~--~~~l~t~~~dg~v~iwd~~~~ 110 (174)
. .....+..++... + |.+|+|...+++..+||.+.+
T Consensus 251 ~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 251 DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 1 2346788888653 2 447888888899999998764
No 477
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=56.94 E-value=1.5e+02 Score=26.79 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=62.0
Q ss_pred CCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee----cccCc
Q 042260 46 NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY----ESRAA 121 (174)
Q Consensus 46 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~ 121 (174)
++++++ +-+..+++|++..++ .+..-..+...+..+...-.|.+++.|.--+++.+-..+..+-.... -.+..
T Consensus 839 ngkllA-~In~~vrLye~t~~~--eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~W 915 (1096)
T KOG1897|consen 839 NGKLLA-GINQSVRLYEWTTER--ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNW 915 (1096)
T ss_pred CCeEEE-ecCcEEEEEEccccc--eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccc
Confidence 345444 446789999997762 23333456677888888888999999998888887666544311111 12344
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 122 VNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 122 v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
+.++.+-.+.. .+-+..+|.+.+--..
T Consensus 916 mtaveil~~d~-ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 916 MTAVEILDDDT-YLGAENSGNLFTVRKD 942 (1096)
T ss_pred eeeEEEecCce-EEeecccccEEEEEec
Confidence 56666654443 4445566766665554
No 478
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=56.65 E-value=23 Score=17.33 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=18.6
Q ss_pred CCCCEEEEEEeeCCCEEEEecC-C--CcEEEE
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSE-D--GTVKIW 105 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~-d--g~v~iw 105 (174)
.........|+|+|+.|+-.+. + |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456777889999998766554 3 555554
No 479
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=53.94 E-value=98 Score=23.70 Aligned_cols=133 Identities=12% Similarity=0.116 Sum_probs=70.1
Q ss_pred EeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCC-eEEeecCCCCEEEEEEee
Q 042260 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQP-VMSYDQHTNNVMAVGFQC 88 (174)
Q Consensus 10 s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~~ 88 (174)
++...+.|---|..+|+....--.....-..+..-|++...++-....|.-.|-.+.+.+. .+..+....+.....|.+
T Consensus 78 t~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~ 157 (353)
T COG4257 78 TAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDP 157 (353)
T ss_pred ecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCC
Confidence 3333333334444555543332233344456666676654443222244444543332211 111223345677788889
Q ss_pred CCCEEEEecCC---------CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 89 DGNWMYSGSED---------GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 89 ~~~~l~t~~~d---------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.|++-+++... +.|++|+.. .....+.++..|+++.-.+.-.+..|-.-|-.+.
T Consensus 158 ~G~lWFt~q~G~yGrLdPa~~~i~vfpaP---------qG~gpyGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 158 WGNLWFTGQIGAYGRLDPARNVISVFPAP---------QGGGPYGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred CccEEEeeccccceecCcccCceeeeccC---------CCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence 99988887643 233443332 2334567788888887666555666766666655
No 480
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=53.53 E-value=28 Score=17.27 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=15.8
Q ss_pred CCCEEEEeeCCCcEEEEeCCC
Q 042260 130 NQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 130 ~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.+..|+.++.||.+.-.|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788899999999998764
No 481
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=52.86 E-value=1e+02 Score=23.62 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCCCeEEeecCCCCEEEEEE-eeCCCEEEEecCC
Q 042260 57 HIRLFDVNSSSPQPVMSYDQHTNNVMAVGF-QCDGNWMYSGSED 99 (174)
Q Consensus 57 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~t~~~d 99 (174)
.+..||..+..+..+.. ..........+. .-+++..+.|+.+
T Consensus 86 ~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcC
Confidence 36678887766554431 111111111112 2467777777654
No 482
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.30 E-value=1.3e+02 Score=26.63 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=51.9
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCC-cEEEEeCCCCccee
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNG-NIRVWDLTANSCSC 155 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~ 155 (174)
.++..+.++...++++..+..|-+.--+++++......- .+.....+.+ .-+-+.|| .+|.||..++...+
T Consensus 36 ~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~------~~~iS~dg~~lr~wn~~~g~l~~ 109 (910)
T KOG2103|consen 36 KKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPL------TNTISVDGRYLRSWNTNNGILDW 109 (910)
T ss_pred eeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCcce------eEEEccCCcEEEeecCCCceeee
Confidence 456677777777778888888888888888887665432 2222111111 11244444 69999999999999
Q ss_pred ecCcccc
Q 042260 156 ELGLQYG 162 (174)
Q Consensus 156 ~~~~~~~ 162 (174)
++++...
T Consensus 110 ~i~l~~g 116 (910)
T KOG2103|consen 110 EIELADG 116 (910)
T ss_pred ecccccc
Confidence 9887766
No 483
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=51.73 E-value=1.9e+02 Score=26.43 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=34.0
Q ss_pred EEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEe
Q 042260 41 LEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWD 106 (174)
Q Consensus 41 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd 106 (174)
.+..|-...+.++-...+++||+...++........-...|..+.+. +..++-|..--.+.++-
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVR 1002 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEE
Confidence 34455444666666678999999665433222222234455555543 44455554433454443
No 484
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=51.39 E-value=72 Score=21.36 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=54.7
Q ss_pred EEEEEeeCCCcEEEEECCCC--------ceeEEeecCCCCeEEEEEcC-----CCceEEEecCCcEEEEEcCCCCCCCeE
Q 042260 6 VILATASYDKTIKFWEAKSG--------RCYRTIQYPDSQVNRLEITP-----NKHYLAAAGNPHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~d~~i~i~d~~~~~~~~~~ 72 (174)
..|+.+..-+.|.|++.... ..+..+... ..|++++-.+ ....|..+....+..||+..+....
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~F-- 87 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-QEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLF-- 87 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECC-CceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhh--
Confidence 45777778889999986533 234444433 3466664332 2345666667789999997764332
Q ss_pred EeecCCCCEEEEEEeeC---CCEEEEecCCCcEEEEeCCC
Q 042260 73 SYDQHTNNVMAVGFQCD---GNWMYSGSEDGTVKIWDLRA 109 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~---~~~l~t~~~dg~v~iwd~~~ 109 (174)
++.-...+.++.+-.- ..-++-.+.+..|.-+|...
T Consensus 88 -yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 88 -YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred -hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 2333455666665331 12233333333555555443
No 485
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=51.14 E-value=1.5e+02 Score=25.09 Aligned_cols=116 Identities=12% Similarity=0.097 Sum_probs=63.2
Q ss_pred eEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEE-eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-
Q 042260 38 VNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMS-YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME- 115 (174)
Q Consensus 38 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~- 115 (174)
|+.+.+...+.+-.++..+.+..|+..+.. ...-. -....+.+..+.=.++++ +..|+.+|-++. +.+..+....
T Consensus 378 it~~~~d~~g~lWlgs~q~GLsrl~n~n~~-avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~l 454 (671)
T COG3292 378 ITTTLEDSRGRLWLGSMQNGLSRLDNKNEW-AVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLL 454 (671)
T ss_pred cchhhhccCCcEEEEecccchhhhccCCcc-cccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhccc
Confidence 444444445555555544444445554311 11100 111346677777777777 777888887764 2333222222
Q ss_pred -----ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 116 -----YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 116 -----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
....+.+..+.+-|+++.=+..+ + .|..|+-+.......+.
T Consensus 455 n~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~-gva~~~sq~~~~~~~l~ 500 (671)
T COG3292 455 NPGSHGLDGSRVEQLGLGPDGRLWLAAG-S-GVAAWESQRRMFVPILD 500 (671)
T ss_pred ccccCcCCcchhhhhccCCCCceEEEec-c-eeeeeccccceeccccc
Confidence 22235577888889888643332 2 37888888776665544
No 486
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=48.26 E-value=1.1e+02 Score=22.87 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=41.8
Q ss_pred CCEEEEEEee----C---CCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc----CCCEEEEeeCCCcEEE
Q 042260 79 NNVMAVGFQC----D---GNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP----NQTELISGDQNGNIRV 145 (174)
Q Consensus 79 ~~v~~~~~~~----~---~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~d~~i~i 145 (174)
..|++++--+ + -..++-|.+.|.|.|.|.+...........+....+...- -+-.++.++.||.|.+
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 4566666322 1 2368999999999999988766655555443322333221 2345777888988765
No 487
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=48.20 E-value=99 Score=24.66 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=32.9
Q ss_pred EEeeCCCEEEEecC-CC--cEEEEeCCCCeeEE-eecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 85 GFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQM-EYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 85 ~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
+|..+|+.|+.+++ || .+.+-|+.+.+... +...........++|+++.++-...+..++--|+++.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 55667765544443 44 46666677765432 22222222245566777777655555678888888754
No 488
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=47.58 E-value=1.4e+02 Score=23.46 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=9.0
Q ss_pred cEEEEeCCCCeeE
Q 042260 101 TVKIWDLRAPVCQ 113 (174)
Q Consensus 101 ~v~iwd~~~~~~~ 113 (174)
.+.+||..+....
T Consensus 190 ~v~~YD~~t~~W~ 202 (376)
T PRK14131 190 EVLSYDPSTNQWK 202 (376)
T ss_pred eEEEEECCCCeee
Confidence 5888898765543
No 489
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.89 E-value=2e+02 Score=25.23 Aligned_cols=53 Identities=9% Similarity=0.179 Sum_probs=34.9
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQ 131 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~ 131 (174)
..+..+..+++.++|+.=..+|.+.+-++....+..++. .+.+...++|..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 567778888899999998899998888776554444443 23333355554443
No 490
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=45.97 E-value=1.2e+02 Score=22.37 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=61.4
Q ss_pred CeEEEEEcCCCceEEEe-cCCcEEEEE-cCCCCCCCeEE-eecCCCCEEEEEEeeCCCEEEEec---CCCcEEEEeCCC-
Q 042260 37 QVNRLEITPNKHYLAAA-GNPHIRLFD-VNSSSPQPVMS-YDQHTNNVMAVGFQCDGNWMYSGS---EDGTVKIWDLRA- 109 (174)
Q Consensus 37 ~v~~~~~~~~~~~~~~~-~d~~i~i~d-~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~t~~---~dg~v~iwd~~~- 109 (174)
.+..-.|++++.+.+.. ++...+++. ..++....... .......|..+.++++|..++.-. .++.|.+=-+..
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 56667788887766554 344455553 33333222221 111112899999999999876654 356676654421
Q ss_pred --C--eeE-E--ee--cccCcEEEEEEccCCCEEEEeeC-CCcEEE
Q 042260 110 --P--VCQ-M--EY--ESRAAVNTVVLHPNQTELISGDQ-NGNIRV 145 (174)
Q Consensus 110 --~--~~~-~--~~--~~~~~v~~~~~~~~~~~l~s~~~-d~~i~i 145 (174)
. ... . .. .....+.++.|.+++.+++.+.. ++.+..
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 1 111 0 11 12357899999999887665544 443443
No 491
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=45.80 E-value=97 Score=27.10 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=47.2
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--------------------cccCcEEEEEEccCCCEEEEee
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--------------------ESRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--------------------~~~~~v~~~~~~~~~~~l~s~~ 138 (174)
..|.++....-+.+++..-.||+|.+.|..+-+.+... ..-.++.-++|+|++..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 55777776667888999999999999997654322211 1112344588999998888888
Q ss_pred CCCcEE
Q 042260 139 QNGNIR 144 (174)
Q Consensus 139 ~d~~i~ 144 (174)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888866
No 492
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=45.42 E-value=1.4e+02 Score=22.86 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=42.0
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCc------EEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAA------VNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
+.++....+|.+|+|...-..|.+.|-++.+++..+..+.. -...++-.+-+.+-.+..++.|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 55666667899999999988999999888877766643310 011222222233333445666777765
No 493
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=44.76 E-value=2.1e+02 Score=24.78 Aligned_cols=149 Identities=13% Similarity=0.185 Sum_probs=75.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCce--eEEeec-CC------CCeEEEEEcC-CCceEEEec--CC--cEEEEEcCCCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRC--YRTIQY-PD------SQVNRLEITP-NKHYLAAAG--NP--HIRLFDVNSSSPQ 69 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~--~~~~~~-~~------~~v~~~~~~~-~~~~~~~~~--d~--~i~i~d~~~~~~~ 69 (174)
++..++....+|.|.+||...+.. +..... +. ..|....... ...+++.+. +. ..|++.+.... .
T Consensus 140 ~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~-~ 218 (670)
T PF10395_consen 140 DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNES-S 218 (670)
T ss_pred CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCC-c
Confidence 456788889999999999832221 111111 11 1122222111 122333332 22 35888882221 2
Q ss_pred CeEEee---cCC--CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccC-------cEEEEEEccCCCEEEEe
Q 042260 70 PVMSYD---QHT--NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRA-------AVNTVVLHPNQTELISG 137 (174)
Q Consensus 70 ~~~~~~---~~~--~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~s~ 137 (174)
...... .+. ..-...+|. .|+...- .++.|.+|++.....+.++..+. .+.++. .|..++++.+
T Consensus 219 ~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~~s~nRvLLs 294 (670)
T PF10395_consen 219 SIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-PPSPNRVLLS 294 (670)
T ss_pred ceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee-cCCCCeEEEE
Confidence 222222 122 222333333 4554333 77899999998777666554331 233332 2344455444
Q ss_pred eCCCcEEEEeCCCCcceeecC
Q 042260 138 DQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 138 ~~d~~i~iwd~~~~~~~~~~~ 158 (174)
.+..|.+.|+.-.+.+.+..
T Consensus 295 -~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 295 -VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -cCCEEEEEeehhhhhhhhhh
Confidence 34579999999877765544
No 494
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=43.91 E-value=86 Score=20.92 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=20.1
Q ss_pred eecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCCC
Q 042260 115 EYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTAN 151 (174)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~ 151 (174)
.+.....+.---+.++.+.|..++ .|++|+.|.+...
T Consensus 6 ~lD~s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~ 43 (136)
T PF08954_consen 6 ELDTSSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDE 43 (136)
T ss_dssp E----SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SS
T ss_pred eccCCCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCC
Confidence 344556677777888888776544 5889999999876
No 495
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=41.76 E-value=1.4e+02 Score=22.41 Aligned_cols=58 Identities=9% Similarity=0.093 Sum_probs=30.4
Q ss_pred CceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE-EeeCCCEEEEecCCCcEEE
Q 042260 47 KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG-FQCDGNWMYSGSEDGTVKI 104 (174)
Q Consensus 47 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~t~~~dg~v~i 104 (174)
..++++..++.+.|.|-.............-...+...+ |..-...|+-+++||.|.+
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 356777788889988876543222222221111222222 2213345666778887765
No 496
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=40.59 E-value=3.1e+02 Score=25.64 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=61.0
Q ss_pred CCCeEEEEEcCCCceEEEecCCcEEEEEc-CCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC-Cee
Q 042260 35 DSQVNRLEITPNKHYLAAAGNPHIRLFDV-NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA-PVC 112 (174)
Q Consensus 35 ~~~v~~~~~~~~~~~~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~ 112 (174)
.+.|..++-- +|.++ ++...+|.+|++ +.....++...+-+. -+.+ ...-.++|..|.--..+.+.-... +..
T Consensus 1097 KGtVsavceV-~G~l~-~~~GqKI~v~~l~r~~~ligVaFiD~~~-yv~s--~~~vknlIl~gDV~ksisfl~fqeep~r 1171 (1366)
T KOG1896|consen 1097 KGTVSAVCEV-RGHLL-SSQGQKIIVRKLDRDSELIGVAFIDLPL-YVHS--MKVVKNLILAGDVMKSISFLGFQEEPYR 1171 (1366)
T ss_pred ccceEEEEEe-ccEEE-EccCcEEEEEEeccCCcceeeEEeccce-eEEe--hhhhhhheehhhhhhceEEEEEccCceE
Confidence 3445544321 44444 454567999999 555555554433221 1222 223356677776666665544432 222
Q ss_pred EEeecc---cCcEEEEEEccCCCE--EEEeeCCCcEEEEeCCCC
Q 042260 113 QMEYES---RAAVNTVVLHPNQTE--LISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 113 ~~~~~~---~~~v~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~ 151 (174)
...+.. .-.+.++.|.-++.. +++...+++|+++-....
T Consensus 1172 lsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1172 LSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred EEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence 222211 234778888777764 567778999888776643
No 497
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=40.29 E-value=1.8e+02 Score=22.72 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=26.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA 53 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 53 (174)
+.+-++=+..|.+.-+|.++|+.......+ +...+++|. |.+++.+
T Consensus 213 grLwvldsgtGev~~vD~~~G~~e~Va~vp-G~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 213 GKLWLLNSGRGELGYVDPQAGKFQPVAFLP-GFTRGLAFA--GDFAFVG 258 (335)
T ss_pred CeEEEEECCCCEEEEEcCCCCcEEEEEECC-CCCccccee--CCEEEEE
Confidence 445556666777777777666544433333 456777776 4544433
No 498
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=40.09 E-value=32 Score=29.33 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=30.9
Q ss_pred EEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEc
Q 042260 17 IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDV 63 (174)
Q Consensus 17 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~ 63 (174)
+.+=|..+...+.-++.|..++..++|.+.+.+++++.-....|.++
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvf 343 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVF 343 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeE
Confidence 34445555556666777888899999999988877664333333333
No 499
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.55 E-value=1.8e+02 Score=22.47 Aligned_cols=145 Identities=12% Similarity=0.231 Sum_probs=84.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCC----CC-eEEe---
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSP----QP-VMSY--- 74 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~----~~-~~~~--- 74 (174)
...|.+..+.+.-.|+=..+|+.++++.... .....+.+...|.++++-. +..+.++.+..... .. ...+
T Consensus 97 ~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~ 176 (316)
T COG3204 97 TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTT 176 (316)
T ss_pred cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEecccc
Confidence 3455666666666777667788888876431 2234566766666666553 45566666544311 00 1111
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee----cc-------cCcEEEEEEccCCCE-EEEeeCCCc
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY----ES-------RAAVNTVVLHPNQTE-LISGDQNGN 142 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~-------~~~v~~~~~~~~~~~-l~s~~~d~~ 142 (174)
...+.....++|.+....+..+-+-.-++|+.+......... .. -..+..+.|++..+. ++-+.+++.
T Consensus 177 ~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~ 256 (316)
T COG3204 177 NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRR 256 (316)
T ss_pred CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCce
Confidence 122567889999998888887777777888776542211100 00 124678888875444 444555655
Q ss_pred EEEEeCC
Q 042260 143 IRVWDLT 149 (174)
Q Consensus 143 i~iwd~~ 149 (174)
+.--|..
T Consensus 257 l~Evd~~ 263 (316)
T COG3204 257 LLEVDLS 263 (316)
T ss_pred EEEEecC
Confidence 5555554
No 500
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=39.14 E-value=2e+02 Score=22.98 Aligned_cols=142 Identities=13% Similarity=0.289 Sum_probs=81.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEc----CCCc---eEEEec--C--CcEEEEEcCCCCCCCeEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEIT----PNKH---YLAAAG--N--PHIRLFDVNSSSPQPVMS 73 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~---~~~~~~--d--~~i~i~d~~~~~~~~~~~ 73 (174)
..+++....++=+.+||+. |+.++.+. ..+.+.++.- -.+. +++++. + ..|++|-+...... +..
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~ 143 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTD 143 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceE
Confidence 3467788888889999987 55666654 2344433322 1222 233332 2 46999987532111 111
Q ss_pred ee-------cCCCCEEEEEEee---CCC-EEEEecCCCcEEEEeCC---CC----eeEEeecccCcEEEEEEccCCCEEE
Q 042260 74 YD-------QHTNNVMAVGFQC---DGN-WMYSGSEDGTVKIWDLR---AP----VCQMEYESRAAVNTVVLHPNQTELI 135 (174)
Q Consensus 74 ~~-------~~~~~v~~~~~~~---~~~-~l~t~~~dg~v~iwd~~---~~----~~~~~~~~~~~v~~~~~~~~~~~l~ 135 (174)
.. .....+..++... +|. +.+....+|.+.-|-+. .. ..+..|...+.+..|+.......|.
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 11 1223466777543 344 45556778887777763 22 3456677778899999988888899
Q ss_pred EeeCCCcEEEEeCCC
Q 042260 136 SGDQNGNIRVWDLTA 150 (174)
Q Consensus 136 s~~~d~~i~iwd~~~ 150 (174)
.+-++.-|.-|+.+.
T Consensus 224 vgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEP 238 (381)
T ss_dssp EEETTTEEEEEESSC
T ss_pred EecCccEEEEEecCC
Confidence 998887777777764
Done!