Query 042260
Match_columns 174
No_of_seqs 120 out of 1278
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:21:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 3.2E-28 1.1E-32 181.7 22.2 168 4-172 66-239 (304)
2 4gqb_B Methylosome protein 50; 100.0 4.3E-28 1.5E-32 184.5 21.9 168 3-171 137-309 (344)
3 1vyh_C Platelet-activating fac 100.0 4.8E-28 1.6E-32 187.8 22.5 166 4-171 119-286 (410)
4 3ow8_A WD repeat-containing pr 100.0 1.2E-27 4E-32 180.3 23.5 167 3-171 132-300 (321)
5 2ynn_A Coatomer subunit beta'; 100.0 1.2E-27 4.2E-32 178.5 23.3 153 3-157 23-179 (304)
6 1got_B GT-beta; complex (GTP-b 100.0 1.8E-27 6.1E-32 180.2 24.5 164 7-172 156-323 (340)
7 4gqb_B Methylosome protein 50; 100.0 1.6E-27 5.4E-32 181.4 22.4 164 7-172 95-268 (344)
8 3frx_A Guanine nucleotide-bind 100.0 4.3E-27 1.5E-31 176.8 24.5 163 3-168 75-245 (319)
9 3ow8_A WD repeat-containing pr 100.0 2.2E-27 7.5E-32 178.7 22.7 166 4-171 91-258 (321)
10 2pbi_B Guanine nucleotide-bind 100.0 6.6E-27 2.2E-31 178.2 25.0 167 4-172 165-337 (354)
11 1vyh_C Platelet-activating fac 100.0 5E-27 1.7E-31 182.1 24.4 167 4-172 203-391 (410)
12 4ery_A WD repeat-containing pr 100.0 2.5E-26 8.5E-31 171.4 24.9 167 3-171 33-202 (312)
13 1got_B GT-beta; complex (GTP-b 100.0 4.3E-26 1.5E-30 172.6 24.8 169 3-172 65-237 (340)
14 3frx_A Guanine nucleotide-bind 100.0 2.4E-26 8.1E-31 172.7 22.9 166 5-172 30-207 (319)
15 4g56_B MGC81050 protein; prote 100.0 1.1E-26 3.9E-31 177.2 21.0 166 3-168 149-319 (357)
16 2pm7_B Protein transport prote 100.0 3.8E-26 1.3E-30 169.9 22.9 170 3-172 19-215 (297)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-26 4.8E-31 175.7 20.9 168 4-171 27-204 (345)
18 2xzm_R RACK1; ribosome, transl 100.0 2.3E-26 7.7E-31 174.2 21.2 147 4-151 87-245 (343)
19 2hes_X YDR267CP; beta-propelle 100.0 9.3E-26 3.2E-30 170.2 23.5 165 7-171 26-207 (330)
20 3iz6_a 40S ribosomal protein R 99.9 4.7E-26 1.6E-30 174.9 21.5 152 5-157 170-336 (380)
21 4ery_A WD repeat-containing pr 99.9 1.8E-25 6.2E-30 166.7 23.5 154 3-158 75-231 (312)
22 2xzm_R RACK1; ribosome, transl 99.9 1.6E-25 5.5E-30 169.5 23.4 165 4-171 38-223 (343)
23 2pbi_B Guanine nucleotide-bind 99.9 2.1E-25 7.2E-30 169.9 24.1 168 4-171 75-250 (354)
24 3iz6_a 40S ribosomal protein R 99.9 6.8E-26 2.3E-30 173.9 19.3 147 4-152 217-377 (380)
25 1nr0_A Actin interacting prote 99.9 6.7E-25 2.3E-29 177.8 24.6 148 7-156 162-361 (611)
26 1erj_A Transcriptional repress 99.9 8.8E-25 3E-29 168.4 24.0 146 4-152 134-289 (393)
27 2pm7_B Protein transport prote 99.9 6.4E-25 2.2E-29 163.3 22.2 148 5-152 67-240 (297)
28 2hes_X YDR267CP; beta-propelle 99.9 4.7E-25 1.6E-29 166.4 21.7 148 4-151 69-231 (330)
29 3dwl_C Actin-related protein 2 99.9 7E-26 2.4E-30 172.5 16.6 168 4-171 66-261 (377)
30 3vl1_A 26S proteasome regulato 99.9 3.6E-25 1.2E-29 170.7 20.1 154 3-158 107-286 (420)
31 1erj_A Transcriptional repress 99.9 1.5E-24 5.1E-29 167.1 23.4 152 3-157 74-245 (393)
32 3bg1_A Protein SEC13 homolog; 99.9 6.3E-26 2.1E-30 170.2 15.0 169 4-172 24-223 (316)
33 2j04_B YDR362CP, TAU91; beta p 99.9 8.9E-26 3.1E-30 180.4 16.5 153 5-158 225-394 (524)
34 4g56_B MGC81050 protein; prote 99.9 3.4E-25 1.2E-29 169.0 18.8 156 3-158 52-221 (357)
35 3fm0_A Protein CIAO1; WDR39,SG 99.9 5.3E-25 1.8E-29 167.0 19.7 146 4-149 72-224 (345)
36 4h5i_A Guanine nucleotide-exch 99.9 1.2E-24 4.2E-29 166.4 20.5 164 8-172 150-323 (365)
37 3dm0_A Maltose-binding peripla 99.9 2.6E-24 8.9E-29 176.5 23.7 166 5-172 395-572 (694)
38 3dm0_A Maltose-binding peripla 99.9 9.3E-25 3.2E-29 179.1 21.0 164 3-166 440-608 (694)
39 3f3f_A Nucleoporin SEH1; struc 99.9 4E-24 1.4E-28 159.5 21.8 148 4-151 22-250 (351)
40 3mmy_A MRNA export factor; mRN 99.9 7.3E-24 2.5E-28 159.8 23.0 165 5-172 54-326 (368)
41 3dwl_C Actin-related protein 2 99.9 1.7E-25 5.9E-30 170.4 14.1 147 4-150 22-177 (377)
42 2aq5_A Coronin-1A; WD40 repeat 99.9 3.2E-24 1.1E-28 165.2 21.3 151 7-157 49-214 (402)
43 2w18_A PALB2, fancn, partner a 99.9 1.2E-24 4.3E-29 164.0 17.5 143 4-148 192-355 (356)
44 1gxr_A ESG1, transducin-like e 99.9 1.2E-23 4E-28 157.1 22.2 163 3-166 61-230 (337)
45 4e54_B DNA damage-binding prot 99.9 4.5E-25 1.5E-29 172.0 14.8 152 5-156 132-288 (435)
46 3lrv_A PRE-mRNA-splicing facto 99.9 2E-24 6.8E-29 163.4 17.7 167 2-172 45-225 (343)
47 3jrp_A Fusion protein of prote 99.9 7.4E-24 2.5E-28 160.5 20.7 170 3-172 21-217 (379)
48 1nr0_A Actin interacting prote 99.9 1.9E-23 6.4E-28 169.4 24.4 151 3-157 69-228 (611)
49 3ei3_B DNA damage-binding prot 99.9 6.6E-24 2.2E-28 162.2 20.4 160 6-165 87-255 (383)
50 1gxr_A ESG1, transducin-like e 99.9 5E-23 1.7E-27 153.6 24.6 149 4-154 108-259 (337)
51 2ymu_A WD-40 repeat protein; u 99.9 1.2E-23 4.2E-28 168.1 22.6 165 3-172 395-560 (577)
52 3vl1_A 26S proteasome regulato 99.9 3.5E-24 1.2E-28 165.1 18.8 165 4-170 150-344 (420)
53 3f3f_A Nucleoporin SEH1; struc 99.9 5.6E-24 1.9E-28 158.7 19.2 150 5-154 71-341 (351)
54 2ymu_A WD-40 repeat protein; u 99.9 7.9E-24 2.7E-28 169.3 20.6 140 4-147 437-577 (577)
55 1k8k_C P40, ARP2/3 complex 41 99.9 9.7E-24 3.3E-28 159.8 20.1 147 3-149 18-172 (372)
56 4aow_A Guanine nucleotide-bind 99.9 2.2E-23 7.4E-28 156.1 21.5 144 5-152 185-339 (340)
57 2aq5_A Coronin-1A; WD40 repeat 99.9 1.3E-23 4.3E-28 161.9 20.7 148 4-153 93-257 (402)
58 3v7d_B Cell division control p 99.9 2.2E-23 7.5E-28 162.9 22.0 164 5-172 132-321 (464)
59 1sq9_A Antiviral protein SKI8; 99.9 1.8E-23 6.3E-28 159.9 20.7 145 4-151 197-396 (397)
60 3jrp_A Fusion protein of prote 99.9 2.7E-23 9.4E-28 157.4 21.4 148 5-152 69-242 (379)
61 1sq9_A Antiviral protein SKI8; 99.9 1E-23 3.6E-28 161.2 19.1 153 3-158 135-330 (397)
62 1k8k_C P40, ARP2/3 complex 41 99.9 4E-23 1.4E-27 156.4 22.0 169 4-172 63-255 (372)
63 3dw8_B Serine/threonine-protei 99.9 9.8E-24 3.4E-28 163.7 18.6 149 4-153 39-261 (447)
64 3vu4_A KMHSV2; beta-propeller 99.9 5.8E-23 2E-27 156.5 22.4 148 4-152 70-273 (355)
65 4aow_A Guanine nucleotide-bind 99.9 6.8E-23 2.3E-27 153.4 22.3 160 5-164 51-260 (340)
66 2oaj_A Protein SNI1; WD40 repe 99.9 7.7E-24 2.6E-28 178.5 18.6 154 3-157 445-671 (902)
67 3bg1_A Protein SEC13 homolog; 99.9 3.3E-24 1.1E-28 160.8 14.7 146 5-150 71-247 (316)
68 3ei3_B DNA damage-binding prot 99.9 7.2E-23 2.5E-27 156.4 21.6 150 4-157 130-289 (383)
69 3v7d_B Cell division control p 99.9 2.3E-22 7.9E-27 157.2 24.8 161 7-169 175-360 (464)
70 3gre_A Serine/threonine-protei 99.9 1.4E-23 4.7E-28 162.9 17.6 152 4-158 181-367 (437)
71 3lrv_A PRE-mRNA-splicing facto 99.9 6E-23 2.1E-27 155.3 20.7 147 8-157 88-251 (343)
72 3k26_A Polycomb protein EED; W 99.9 1E-23 3.5E-28 159.0 15.9 145 5-153 85-263 (366)
73 4aez_A CDC20, WD repeat-contai 99.9 2.5E-22 8.6E-27 154.8 23.8 161 7-171 105-269 (401)
74 4e54_B DNA damage-binding prot 99.9 1.1E-23 3.6E-28 164.2 16.3 151 4-157 176-334 (435)
75 4h5i_A Guanine nucleotide-exch 99.9 4.4E-23 1.5E-27 157.8 18.8 148 3-151 186-344 (365)
76 4aez_A CDC20, WD repeat-contai 99.9 2.2E-22 7.5E-27 155.1 22.3 162 4-167 145-310 (401)
77 3odt_A Protein DOA1; ubiquitin 99.9 9.5E-23 3.2E-27 150.9 19.5 151 4-160 154-306 (313)
78 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.7E-22 5.8E-27 158.0 21.8 154 4-158 113-279 (450)
79 3zwl_B Eukaryotic translation 99.9 4.7E-22 1.6E-26 149.9 23.5 161 4-165 85-264 (369)
80 1r5m_A SIR4-interacting protei 99.9 6.8E-23 2.3E-27 157.2 19.2 165 4-171 160-340 (425)
81 3i2n_A WD repeat-containing pr 99.9 6.9E-23 2.3E-27 154.2 18.7 152 5-157 80-250 (357)
82 2xyi_A Probable histone-bindin 99.9 9.6E-23 3.3E-27 158.7 20.1 167 5-171 141-331 (430)
83 2j04_B YDR362CP, TAU91; beta p 99.9 6.9E-24 2.4E-28 169.5 13.6 144 6-151 278-429 (524)
84 3sfz_A APAF-1, apoptotic pepti 99.9 1.3E-22 4.3E-27 175.0 22.2 153 3-157 625-781 (1249)
85 3zwl_B Eukaryotic translation 99.9 3.3E-22 1.1E-26 150.8 21.8 166 3-171 42-228 (369)
86 3k26_A Polycomb protein EED; W 99.9 1.3E-22 4.6E-27 152.9 19.6 148 7-156 36-198 (366)
87 3mkq_A Coatomer beta'-subunit; 99.9 1.2E-22 3.9E-27 168.3 20.8 154 3-158 23-180 (814)
88 1r5m_A SIR4-interacting protei 99.9 5.8E-23 2E-27 157.6 17.6 144 4-149 258-424 (425)
89 1yfq_A Cell cycle arrest prote 99.9 1.2E-22 4.1E-27 152.3 18.2 154 5-160 112-292 (342)
90 3jro_A Fusion protein of prote 99.9 1.1E-22 3.6E-27 168.6 19.3 170 3-172 19-215 (753)
91 2pm9_A Protein WEB1, protein t 99.9 9.3E-23 3.2E-27 156.7 17.3 150 5-155 178-342 (416)
92 3dw8_B Serine/threonine-protei 99.9 7.3E-23 2.5E-27 158.7 16.8 151 6-158 108-324 (447)
93 2xyi_A Probable histone-bindin 99.9 7.6E-22 2.6E-26 153.6 22.3 144 7-150 196-353 (430)
94 4a11_B DNA excision repair pro 99.9 6.3E-22 2.1E-26 151.2 21.3 151 5-156 156-371 (408)
95 3odt_A Protein DOA1; ubiquitin 99.9 9.9E-22 3.4E-26 145.4 21.3 160 5-172 114-277 (313)
96 3gre_A Serine/threonine-protei 99.9 2.8E-23 9.6E-28 161.2 13.5 153 4-158 122-300 (437)
97 1p22_A F-BOX/WD-repeat protein 99.9 1.5E-21 5.2E-26 151.9 22.7 154 4-162 182-337 (435)
98 3jro_A Fusion protein of prote 99.9 3.6E-22 1.2E-26 165.5 20.1 148 5-152 67-240 (753)
99 4gq1_A NUP37; propeller, trans 99.9 2.1E-22 7E-27 155.3 16.8 169 4-172 155-370 (393)
100 2pm9_A Protein WEB1, protein t 99.9 4.4E-22 1.5E-26 152.9 18.6 155 4-158 78-258 (416)
101 3i2n_A WD repeat-containing pr 99.9 1.3E-21 4.4E-26 147.2 20.7 163 5-168 31-217 (357)
102 3mkq_A Coatomer beta'-subunit; 99.9 4.5E-22 1.5E-26 164.7 19.9 168 4-172 66-239 (814)
103 2oaj_A Protein SNI1; WD40 repe 99.9 2.5E-22 8.7E-27 169.3 18.1 149 5-155 69-247 (902)
104 4gga_A P55CDC, cell division c 99.9 1.3E-21 4.5E-26 151.7 20.9 167 4-173 241-419 (420)
105 4gq1_A NUP37; propeller, trans 99.9 1.1E-22 3.6E-27 157.0 14.0 151 4-156 100-292 (393)
106 2ovr_B FBW7, F-BOX/WD repeat p 99.9 2.6E-21 8.9E-26 150.8 21.4 149 5-160 129-278 (445)
107 1p22_A F-BOX/WD-repeat protein 99.9 3.5E-21 1.2E-25 149.9 22.0 152 4-162 142-297 (435)
108 3sfz_A APAF-1, apoptotic pepti 99.9 2.6E-21 9E-26 166.8 22.8 166 4-171 668-892 (1249)
109 1pgu_A Actin interacting prote 99.9 1E-20 3.6E-25 151.7 24.0 150 4-157 77-245 (615)
110 2w18_A PALB2, fancn, partner a 99.9 6.5E-21 2.2E-25 143.8 21.2 165 4-172 144-337 (356)
111 2ovr_B FBW7, F-BOX/WD repeat p 99.9 9.6E-21 3.3E-25 147.6 23.0 146 5-157 249-398 (445)
112 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.8E-21 2E-25 149.3 21.4 162 4-168 160-362 (450)
113 1yfq_A Cell cycle arrest prote 99.9 1.3E-21 4.4E-26 146.7 16.6 144 4-153 22-183 (342)
114 2j04_A TAU60, YPL007P, hypothe 99.9 2.1E-21 7.1E-26 154.8 18.3 158 3-168 95-273 (588)
115 4ggc_A P55CDC, cell division c 99.9 9.6E-21 3.3E-25 140.5 20.4 144 4-150 161-315 (318)
116 3mmy_A MRNA export factor; mRN 99.9 4.5E-21 1.5E-25 144.5 18.8 147 19-165 23-175 (368)
117 4a11_B DNA excision repair pro 99.9 1.3E-20 4.3E-25 144.0 21.5 149 4-155 111-281 (408)
118 4gga_A P55CDC, cell division c 99.9 2.3E-20 7.8E-25 144.7 22.3 165 3-169 157-329 (420)
119 3vu4_A KMHSV2; beta-propeller 99.9 3.1E-21 1.1E-25 146.9 17.0 140 11-152 155-338 (355)
120 1pgu_A Actin interacting prote 99.9 3.7E-20 1.3E-24 148.5 22.6 146 24-172 436-595 (615)
121 1l0q_A Surface layer protein; 99.9 1E-19 3.4E-24 139.1 23.9 155 5-163 2-160 (391)
122 4ggc_A P55CDC, cell division c 99.9 1.4E-19 4.8E-24 134.2 23.5 170 3-172 77-295 (318)
123 2j04_A TAU60, YPL007P, hypothe 99.9 1.3E-20 4.3E-25 150.3 16.5 142 3-149 139-296 (588)
124 1l0q_A Surface layer protein; 99.9 6.3E-19 2.1E-23 134.6 23.8 154 6-163 45-202 (391)
125 3bws_A Protein LP49; two-domai 99.8 2.4E-19 8.2E-24 138.7 20.8 158 4-163 133-305 (433)
126 3bws_A Protein LP49; two-domai 99.8 1.6E-18 5.4E-23 134.1 21.5 159 4-165 180-349 (433)
127 2oit_A Nucleoporin 214KDA; NH2 99.8 2.3E-19 7.9E-24 140.3 14.1 144 5-149 48-222 (434)
128 2oit_A Nucleoporin 214KDA; NH2 99.8 3.2E-18 1.1E-22 133.8 15.2 145 4-151 103-279 (434)
129 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.6E-15 5.4E-20 117.8 22.8 135 15-153 159-303 (415)
130 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.7E-15 5.7E-20 117.6 21.6 148 3-154 188-348 (415)
131 1ri6_A Putative isomerase YBHE 99.7 1.1E-15 3.6E-20 114.2 16.2 151 1-153 1-164 (343)
132 3u4y_A Uncharacterized protein 99.7 9.5E-15 3.3E-19 109.0 21.3 148 4-153 9-163 (331)
133 1pby_B Quinohemoprotein amine 99.7 1.4E-15 4.7E-20 113.3 16.2 150 6-157 2-170 (337)
134 1xfd_A DIP, dipeptidyl aminope 99.7 3.6E-16 1.2E-20 128.2 12.0 153 4-158 27-245 (723)
135 1pby_B Quinohemoprotein amine 99.7 1.7E-14 5.9E-19 107.3 19.2 144 13-160 113-320 (337)
136 3vgz_A Uncharacterized protein 99.7 4.5E-14 1.5E-18 105.9 21.4 152 5-158 101-270 (353)
137 2ecf_A Dipeptidyl peptidase IV 99.7 5.2E-15 1.8E-19 121.7 17.6 135 3-141 46-230 (741)
138 1nir_A Nitrite reductase; hemo 99.7 4.2E-14 1.4E-18 113.5 21.7 147 4-154 148-315 (543)
139 2ojh_A Uncharacterized protein 99.7 7.6E-15 2.6E-19 106.9 16.1 137 10-150 17-160 (297)
140 1nir_A Nitrite reductase; hemo 99.7 1.7E-14 5.8E-19 115.7 19.3 153 3-158 188-363 (543)
141 2ojh_A Uncharacterized protein 99.6 3.2E-14 1.1E-18 103.6 17.4 152 4-158 52-213 (297)
142 1jmx_B Amine dehydrogenase; ox 99.6 7.5E-15 2.5E-19 109.9 14.3 151 3-158 9-183 (349)
143 3vgz_A Uncharacterized protein 99.6 2E-13 6.7E-18 102.4 20.7 157 7-164 155-317 (353)
144 3u4y_A Uncharacterized protein 99.6 3.6E-13 1.2E-17 100.4 21.4 155 4-161 50-221 (331)
145 1ri6_A Putative isomerase YBHE 99.6 7.4E-13 2.5E-17 98.7 21.0 145 5-149 140-307 (343)
146 1jmx_B Amine dehydrogenase; ox 99.6 3.9E-13 1.3E-17 100.5 18.7 149 6-160 56-294 (349)
147 1z68_A Fibroblast activation p 99.6 2.1E-14 7E-19 118.0 10.7 132 4-140 26-189 (719)
148 3o4h_A Acylamino-acid-releasin 99.5 1.3E-13 4.4E-18 110.9 14.7 140 6-154 124-278 (582)
149 2ecf_A Dipeptidyl peptidase IV 99.5 6.6E-14 2.3E-18 115.1 13.2 148 4-155 119-326 (741)
150 2z3z_A Dipeptidyl aminopeptida 99.5 2.8E-13 9.6E-18 110.9 16.0 142 5-151 93-294 (706)
151 3hfq_A Uncharacterized protein 99.5 2.1E-12 7.2E-17 97.1 18.9 151 4-154 151-323 (347)
152 1xfd_A DIP, dipeptidyl aminope 99.5 1.3E-13 4.4E-18 113.1 12.8 150 3-155 70-294 (723)
153 2z3z_A Dipeptidyl aminopeptida 99.5 1.4E-13 4.6E-18 112.8 12.6 154 4-158 131-351 (706)
154 3hfq_A Uncharacterized protein 99.5 3.4E-12 1.2E-16 96.0 19.2 147 4-150 96-271 (347)
155 1k32_A Tricorn protease; prote 99.5 6.5E-13 2.2E-17 113.5 16.2 143 4-152 307-463 (1045)
156 3scy_A Hypothetical bacterial 99.5 8.6E-12 3E-16 94.3 19.2 148 7-154 169-343 (361)
157 1k32_A Tricorn protease; prote 99.5 2E-12 7E-17 110.5 17.3 144 4-150 347-502 (1045)
158 3no2_A Uncharacterized protein 99.4 1.9E-11 6.4E-16 90.1 18.2 152 3-160 3-164 (276)
159 1jof_A Carboxy-CIS,CIS-muconat 99.4 5.1E-11 1.7E-15 90.6 19.4 140 13-152 117-294 (365)
160 3scy_A Hypothetical bacterial 99.4 4.6E-11 1.6E-15 90.3 18.7 143 7-149 112-290 (361)
161 1z68_A Fibroblast activation p 99.4 6.9E-13 2.4E-17 108.9 8.9 149 4-154 70-295 (719)
162 3o4h_A Acylamino-acid-releasin 99.4 5.9E-12 2E-16 101.2 13.5 144 4-154 32-188 (582)
163 4a5s_A Dipeptidyl peptidase 4 99.4 1.1E-11 3.8E-16 102.5 15.0 131 3-139 26-190 (740)
164 1xip_A Nucleoporin NUP159; bet 99.4 3.3E-11 1.1E-15 92.8 14.9 136 4-153 48-194 (388)
165 1q7f_A NHL, brain tumor CG1071 99.3 4.5E-10 1.5E-14 82.2 19.4 141 4-150 131-280 (286)
166 2dg1_A DRP35, lactonase; beta 99.3 3E-10 1E-14 84.8 18.6 147 4-150 55-213 (333)
167 1jof_A Carboxy-CIS,CIS-muconat 99.3 7.9E-11 2.7E-15 89.5 15.5 145 4-149 50-223 (365)
168 3fvz_A Peptidyl-glycine alpha- 99.3 1E-09 3.6E-14 82.3 21.2 141 15-157 69-234 (329)
169 3fvz_A Peptidyl-glycine alpha- 99.3 1.7E-10 5.7E-15 86.7 15.2 147 4-151 154-323 (329)
170 4a5s_A Dipeptidyl peptidase 4 99.3 6.2E-11 2.1E-15 98.0 13.9 147 4-152 72-296 (740)
171 3pe7_A Oligogalacturonate lyas 99.3 3.9E-10 1.3E-14 85.6 16.3 146 4-151 46-226 (388)
172 1q7f_A NHL, brain tumor CG1071 99.2 2.3E-09 7.7E-14 78.4 19.2 147 4-156 88-243 (286)
173 3pe7_A Oligogalacturonate lyas 99.2 7.7E-10 2.6E-14 84.0 16.3 147 4-153 91-276 (388)
174 3dsm_A Uncharacterized protein 99.2 2.7E-09 9.3E-14 80.1 18.3 152 4-159 53-221 (328)
175 3azo_A Aminopeptidase; POP fam 99.2 2.6E-10 8.9E-15 92.7 13.3 144 5-151 35-228 (662)
176 3dsm_A Uncharacterized protein 99.2 2.9E-09 9.8E-14 80.0 17.3 161 5-171 141-322 (328)
177 3e5z_A Putative gluconolactona 99.2 2.8E-09 9.7E-14 78.4 16.7 141 6-149 41-201 (296)
178 3azo_A Aminopeptidase; POP fam 99.2 1E-09 3.5E-14 89.2 15.3 151 4-157 140-331 (662)
179 2oiz_A Aromatic amine dehydrog 99.2 1.5E-08 5E-13 77.2 20.3 83 84-168 259-355 (361)
180 1xip_A Nucleoporin NUP159; bet 99.1 1.1E-09 3.6E-14 84.4 13.6 122 5-136 97-230 (388)
181 1rwi_B Serine/threonine-protei 99.1 4.2E-09 1.5E-13 76.1 16.0 148 4-153 118-267 (270)
182 3no2_A Uncharacterized protein 99.1 5.7E-09 1.9E-13 76.8 16.7 151 3-158 46-203 (276)
183 1qks_A Cytochrome CD1 nitrite 99.1 7E-08 2.4E-12 77.8 22.2 151 5-157 167-380 (567)
184 3c5m_A Oligogalacturonate lyas 99.1 1.6E-09 5.3E-14 82.3 11.6 148 4-154 91-277 (396)
185 3e5z_A Putative gluconolactona 99.1 2.8E-08 9.7E-13 73.0 17.3 161 4-169 79-264 (296)
186 2bkl_A Prolyl endopeptidase; m 99.0 2.3E-09 7.7E-14 88.1 12.4 147 4-152 131-306 (695)
187 1rwi_B Serine/threonine-protei 99.0 2.5E-08 8.7E-13 72.0 16.6 148 4-154 34-184 (270)
188 2oiz_A Aromatic amine dehydrog 99.0 6.4E-09 2.2E-13 79.2 12.9 133 13-150 29-182 (361)
189 2xdw_A Prolyl endopeptidase; a 99.0 1.7E-08 5.9E-13 83.0 16.0 147 4-152 135-322 (710)
190 2hz6_A Endoplasmic reticulum t 99.0 3.5E-11 1.2E-15 92.1 -0.4 145 5-157 9-156 (369)
191 2dg1_A DRP35, lactonase; beta 99.0 5.8E-08 2E-12 72.3 16.6 139 8-151 20-172 (333)
192 2gop_A Trilobed protease; beta 99.0 2E-08 6.8E-13 75.1 13.4 117 13-140 41-190 (347)
193 2xdw_A Prolyl endopeptidase; a 98.9 4.2E-07 1.4E-11 74.8 21.5 153 4-158 181-376 (710)
194 3c5m_A Oligogalacturonate lyas 98.9 2.8E-08 9.5E-13 75.3 13.3 137 12-153 165-332 (396)
195 2gop_A Trilobed protease; beta 98.9 7.6E-08 2.6E-12 71.9 15.5 124 15-152 152-293 (347)
196 1yr2_A Prolyl oligopeptidase; 98.8 8.1E-08 2.8E-12 79.5 14.4 145 4-151 173-351 (741)
197 2z2n_A Virginiamycin B lyase; 98.8 4.3E-06 1.5E-10 60.7 21.8 145 4-153 25-173 (299)
198 2hz6_A Endoplasmic reticulum t 98.8 5.1E-10 1.7E-14 85.6 0.0 152 5-163 49-205 (369)
199 3g4e_A Regucalcin; six bladed 98.8 3.1E-06 1E-10 62.4 20.1 161 5-169 65-249 (297)
200 3g4e_A Regucalcin; six bladed 98.8 1.5E-06 5E-11 64.1 18.0 143 4-149 24-179 (297)
201 2z2n_A Virginiamycin B lyase; 98.8 8.7E-06 3E-10 59.1 21.7 143 4-152 67-214 (299)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 1E-06 3.5E-11 64.8 16.6 135 15-151 153-300 (314)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 3E-07 1E-11 67.6 13.6 143 4-149 28-206 (314)
204 2ghs_A AGR_C_1268P; regucalcin 98.7 1.6E-06 5.4E-11 64.9 17.6 140 5-149 61-209 (326)
205 2qc5_A Streptogramin B lactona 98.7 1.4E-05 4.8E-10 58.0 22.0 141 4-149 30-175 (300)
206 1qks_A Cytochrome CD1 nitrite 98.7 3.2E-06 1.1E-10 68.2 19.7 145 3-150 206-421 (567)
207 2bkl_A Prolyl endopeptidase; m 98.7 2.4E-06 8.2E-11 70.2 17.7 142 3-149 177-348 (695)
208 2qc5_A Streptogramin B lactona 98.7 3.1E-05 1.1E-09 56.1 21.9 142 4-149 72-217 (300)
209 3sjl_D Methylamine dehydrogena 98.7 1.8E-06 6.2E-11 66.3 15.7 142 5-150 45-208 (386)
210 3dr2_A Exported gluconolactona 98.7 2.1E-06 7.2E-11 63.4 15.6 142 6-151 58-225 (305)
211 3nok_A Glutaminyl cyclase; bet 98.6 6.7E-06 2.3E-10 59.8 17.4 148 4-158 64-218 (268)
212 2mad_H Methylamine dehydrogena 98.6 2.3E-05 8E-10 59.8 21.3 160 7-167 179-368 (373)
213 3hrp_A Uncharacterized protein 98.6 5.5E-06 1.9E-10 64.1 17.3 147 5-152 182-356 (409)
214 2ghs_A AGR_C_1268P; regucalcin 98.6 7.2E-05 2.5E-09 55.8 22.0 152 4-161 100-270 (326)
215 1yiq_A Quinohemoprotein alcoho 98.5 3.5E-06 1.2E-10 69.4 15.5 63 99-161 454-516 (689)
216 2mad_H Methylamine dehydrogena 98.5 3E-05 1E-09 59.3 19.4 132 16-154 48-199 (373)
217 3hrp_A Uncharacterized protein 98.5 4.9E-06 1.7E-10 64.4 14.8 144 4-151 141-299 (409)
218 3nol_A Glutamine cyclotransfer 98.5 1.3E-05 4.4E-10 58.3 16.0 149 4-158 52-209 (262)
219 3sjl_D Methylamine dehydrogena 98.5 4.4E-06 1.5E-10 64.2 13.9 128 45-173 236-385 (386)
220 2iwa_A Glutamine cyclotransfer 98.4 4.8E-05 1.6E-09 55.5 17.6 149 5-159 32-190 (266)
221 1yr2_A Prolyl oligopeptidase; 98.4 5.7E-05 1.9E-09 62.5 19.7 140 17-158 245-402 (741)
222 3q7m_A Lipoprotein YFGL, BAMB; 98.4 4.4E-05 1.5E-09 57.7 17.6 146 7-158 55-215 (376)
223 2qe8_A Uncharacterized protein 98.4 1.1E-05 3.9E-10 60.6 14.3 147 4-152 77-280 (343)
224 3iuj_A Prolyl endopeptidase; h 98.4 7E-06 2.4E-10 67.5 13.9 140 11-153 151-317 (693)
225 3mbr_X Glutamine cyclotransfer 98.4 7E-05 2.4E-09 53.8 16.8 148 5-158 31-187 (243)
226 2ece_A 462AA long hypothetical 98.4 2.6E-05 8.7E-10 60.9 15.1 144 5-150 96-289 (462)
227 2ece_A 462AA long hypothetical 98.3 1.9E-05 6.6E-10 61.6 14.0 142 7-150 150-352 (462)
228 3c75_H MADH, methylamine dehyd 98.3 5.1E-05 1.7E-09 59.1 16.1 139 5-148 85-246 (426)
229 3dr2_A Exported gluconolactona 98.3 3.8E-05 1.3E-09 56.6 14.3 157 4-168 96-284 (305)
230 1kb0_A Quinohemoprotein alcoho 98.3 2.4E-05 8.1E-10 64.4 14.1 146 16-161 284-518 (677)
231 2iwa_A Glutamine cyclotransfer 98.2 0.00013 4.6E-09 53.2 15.8 144 5-151 76-238 (266)
232 3c75_H MADH, methylamine dehyd 98.2 0.00029 9.9E-09 54.8 17.9 88 84-173 324-424 (426)
233 2p9w_A MAL S 1 allergenic prot 98.2 0.00027 9.4E-09 53.0 16.7 147 4-151 24-216 (334)
234 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.00013 4.6E-09 55.1 15.3 145 7-159 190-346 (376)
235 3hxj_A Pyrrolo-quinoline quino 98.1 0.00016 5.6E-09 53.2 14.2 140 7-156 109-249 (330)
236 3iuj_A Prolyl endopeptidase; h 98.1 0.00047 1.6E-08 56.7 18.0 132 16-151 209-360 (693)
237 2qe8_A Uncharacterized protein 98.1 8.1E-05 2.8E-09 55.9 12.3 138 5-143 132-314 (343)
238 3nol_A Glutamine cyclotransfer 98.1 0.00039 1.3E-08 50.5 15.2 132 5-139 97-244 (262)
239 2fp8_A Strictosidine synthase; 98.0 0.00056 1.9E-08 50.7 16.1 145 5-150 30-216 (322)
240 3nok_A Glutaminyl cyclase; bet 98.0 0.00053 1.8E-08 49.9 15.3 130 6-138 107-253 (268)
241 1kv9_A Type II quinohemoprotei 98.0 0.00028 9.4E-09 58.0 15.5 64 98-161 436-499 (668)
242 3hxj_A Pyrrolo-quinoline quino 98.0 0.00015 5.2E-09 53.3 12.7 141 8-158 150-291 (330)
243 1mda_H Methylamine dehydrogena 98.0 7.3E-05 2.5E-09 57.1 10.8 137 4-150 31-194 (368)
244 1kb0_A Quinohemoprotein alcoho 98.0 0.00027 9.2E-09 58.1 14.8 150 7-158 130-354 (677)
245 1mda_H Methylamine dehydrogena 98.0 0.00013 4.3E-09 55.8 11.6 84 84-167 269-363 (368)
246 1yiq_A Quinohemoprotein alcoho 98.0 0.00051 1.7E-08 56.6 15.9 148 7-156 123-344 (689)
247 3mbr_X Glutamine cyclotransfer 97.9 0.0022 7.7E-08 46.0 17.8 131 5-138 75-222 (243)
248 1fwx_A Nitrous oxide reductase 97.8 0.0035 1.2E-07 50.6 17.4 142 7-151 104-309 (595)
249 1flg_A Protein (quinoprotein e 97.8 0.0021 7.1E-08 52.0 16.1 66 98-163 464-529 (582)
250 2ad6_A Methanol dehydrogenase 97.7 0.0023 7.8E-08 51.6 15.3 64 98-161 442-505 (571)
251 1fwx_A Nitrous oxide reductase 97.7 0.00085 2.9E-08 54.1 12.4 137 12-150 172-361 (595)
252 1npe_A Nidogen, entactin; glyc 97.6 0.0086 2.9E-07 42.9 22.0 150 5-158 91-246 (267)
253 1kv9_A Type II quinohemoprotei 97.6 0.0034 1.2E-07 51.5 15.5 147 7-156 119-339 (668)
254 3tc9_A Hypothetical hydrolase; 97.6 0.016 5.6E-07 44.9 18.5 139 10-150 154-301 (430)
255 1w6s_A Methanol dehydrogenase 97.6 0.0088 3E-07 48.6 16.9 64 98-161 451-514 (599)
256 1npe_A Nidogen, entactin; glyc 97.5 0.014 4.7E-07 41.8 21.8 145 5-151 48-199 (267)
257 1k3i_A Galactose oxidase precu 97.4 0.0011 3.8E-08 54.1 10.4 150 4-154 197-382 (656)
258 2fp8_A Strictosidine synthase; 97.3 0.031 1.1E-06 41.1 16.8 132 15-150 165-313 (322)
259 2ad6_A Methanol dehydrogenase 97.2 0.0031 1.1E-07 50.8 10.7 77 56-135 444-522 (571)
260 1flg_A Protein (quinoprotein e 97.2 0.007 2.4E-07 48.9 12.3 76 56-134 466-543 (582)
261 3v65_B Low-density lipoprotein 97.2 0.046 1.6E-06 41.7 20.5 165 5-172 171-341 (386)
262 3pbp_A Nucleoporin NUP82; beta 97.1 0.056 1.9E-06 42.0 16.2 141 4-145 22-207 (452)
263 4a2l_A BT_4663, two-component 97.1 0.083 2.8E-06 44.0 18.6 143 8-153 323-483 (795)
264 4a2l_A BT_4663, two-component 97.1 0.082 2.8E-06 44.0 18.3 139 8-153 420-574 (795)
265 2xe4_A Oligopeptidase B; hydro 97.1 0.0061 2.1E-07 50.6 11.4 132 16-150 202-354 (751)
266 2xe4_A Oligopeptidase B; hydro 97.1 0.011 3.9E-07 49.0 12.8 111 37-151 175-305 (751)
267 3amr_A 3-phytase; beta-propell 97.1 0.059 2E-06 40.8 19.3 139 7-149 42-209 (355)
268 1w6s_A Methanol dehydrogenase 97.1 0.036 1.2E-06 45.0 15.3 147 8-158 124-350 (599)
269 1k3i_A Galactose oxidase precu 97.0 0.034 1.1E-06 45.4 15.2 115 40-154 190-327 (656)
270 2xn4_A Kelch-like protein 2; s 97.0 0.037 1.3E-06 40.2 14.1 145 5-154 109-280 (302)
271 2vpj_A Kelch-like protein 12; 97.0 0.039 1.3E-06 40.1 14.1 145 5-154 113-282 (301)
272 4hw6_A Hypothetical protein, I 97.0 0.085 2.9E-06 40.9 17.4 141 5-149 153-303 (433)
273 3ii7_A Kelch-like protein 7; p 96.9 0.034 1.2E-06 40.5 13.1 146 4-154 101-276 (306)
274 2vpj_A Kelch-like protein 12; 96.9 0.075 2.6E-06 38.5 15.4 145 5-154 63-235 (301)
275 3pbp_A Nucleoporin NUP82; beta 96.8 0.052 1.8E-06 42.2 13.7 105 45-150 30-158 (452)
276 4asc_A Kelch repeat and BTB do 96.7 0.045 1.5E-06 40.2 12.4 146 5-155 99-282 (315)
277 3sov_A LRP-6, low-density lipo 96.7 0.12 4E-06 38.4 20.8 164 6-172 92-261 (318)
278 3p5b_L Low density lipoprotein 96.7 0.15 5E-06 39.1 23.3 164 6-172 172-343 (400)
279 3v9f_A Two-component system se 96.6 0.1 3.5E-06 43.3 15.2 141 9-152 377-526 (781)
280 3v64_C Agrin; beta propeller, 96.6 0.15 5.3E-06 38.2 19.8 144 5-150 85-234 (349)
281 1n7d_A LDL receptor, low-densi 96.5 0.02 6.8E-07 47.3 10.1 163 6-171 466-636 (699)
282 1zgk_A Kelch-like ECH-associat 96.5 0.11 3.8E-06 37.9 13.2 145 5-154 122-291 (308)
283 3v64_C Agrin; beta propeller, 96.5 0.17 5.9E-06 37.9 20.9 165 5-172 128-298 (349)
284 1zgk_A Kelch-like ECH-associat 96.4 0.12 4E-06 37.8 13.0 145 5-154 71-244 (308)
285 1ijq_A LDL receptor, low-densi 96.4 0.17 5.9E-06 37.3 21.5 165 5-172 89-261 (316)
286 3v9f_A Two-component system se 96.4 0.35 1.2E-05 40.1 17.8 140 10-152 422-570 (781)
287 2xn4_A Kelch-like protein 2; s 96.4 0.14 4.6E-06 37.2 12.9 145 5-154 62-233 (302)
288 3qqz_A Putative uncharacterize 96.3 0.17 6E-06 36.4 19.0 147 4-151 38-205 (255)
289 4hw6_A Hypothetical protein, I 96.3 0.25 8.7E-06 38.2 17.0 144 5-149 240-432 (433)
290 3v65_B Low-density lipoprotein 96.3 0.24 8.3E-06 37.6 18.6 144 5-150 128-277 (386)
291 3kya_A Putative phosphatase; s 96.2 0.32 1.1E-05 38.5 16.9 144 5-149 152-340 (496)
292 2uvk_A YJHT; unknown function, 96.2 0.097 3.3E-06 39.0 11.7 141 15-158 168-350 (357)
293 3qqz_A Putative uncharacterize 96.1 0.2 7E-06 36.0 12.4 113 35-149 26-150 (255)
294 3m0c_C LDL receptor, low-densi 96.1 0.53 1.8E-05 39.5 21.6 163 6-171 484-654 (791)
295 2woz_A Kelch repeat and BTB do 96.0 0.15 5E-06 37.4 11.7 145 5-154 110-291 (318)
296 2p4o_A Hypothetical protein; p 96.0 0.29 1E-05 35.6 18.2 142 4-150 42-198 (306)
297 3ii7_A Kelch-like protein 7; p 95.9 0.3 1E-05 35.4 13.7 145 5-154 56-229 (306)
298 2xbg_A YCF48-like protein; pho 95.7 0.43 1.5E-05 35.3 16.4 140 4-147 46-190 (327)
299 2xbg_A YCF48-like protein; pho 95.5 0.5 1.7E-05 34.9 15.3 111 35-148 204-320 (327)
300 2p4o_A Hypothetical protein; p 95.4 0.5 1.7E-05 34.3 18.1 122 25-151 22-148 (306)
301 3m0c_C LDL receptor, low-densi 95.4 1 3.5E-05 37.8 20.2 144 6-151 437-590 (791)
302 1ijq_A LDL receptor, low-densi 95.1 0.69 2.3E-05 34.0 20.8 144 5-150 42-195 (316)
303 3sre_A PON1, serum paraoxonase 95.0 0.82 2.8E-05 34.6 18.2 136 13-150 81-252 (355)
304 3tc9_A Hypothetical hydrolase; 94.9 0.98 3.4E-05 34.8 17.0 145 4-149 237-429 (430)
305 2zwa_A Leucine carboxyl methyl 94.9 0.35 1.2E-05 39.8 11.2 150 4-154 451-639 (695)
306 4asc_A Kelch repeat and BTB do 94.6 0.87 3E-05 33.1 13.7 143 5-154 5-178 (315)
307 3s94_A LRP-6, low-density lipo 94.6 1.5 5E-05 35.7 17.7 164 5-171 96-265 (619)
308 3ei3_A DNA damage-binding prot 94.6 2.1 7.3E-05 37.5 15.6 131 16-149 493-635 (1158)
309 2zwa_A Leucine carboxyl methyl 94.5 0.95 3.3E-05 37.3 12.8 147 5-152 398-579 (695)
310 1n7d_A LDL receptor, low-densi 94.4 0.3 1E-05 40.3 9.6 144 5-150 418-571 (699)
311 3p5b_L Low density lipoprotein 94.0 1.5 5.1E-05 33.4 21.1 113 36-150 159-277 (400)
312 1bpo_A Protein (clathrin); cla 94.0 1.7 5.9E-05 34.1 20.1 150 6-159 78-298 (494)
313 4a0p_A LRP6, LRP-6, low-densit 93.6 2.5 8.4E-05 34.5 21.6 145 5-151 49-198 (628)
314 2be1_A Serine/threonine-protei 93.4 0.65 2.2E-05 34.9 9.1 113 5-119 10-140 (339)
315 3kya_A Putative phosphatase; s 93.2 2.5 8.6E-05 33.5 16.6 152 4-156 258-481 (496)
316 3amr_A 3-phytase; beta-propell 93.2 2.1 7.1E-05 32.4 16.8 134 14-149 98-262 (355)
317 2ism_A Putative oxidoreductase 92.9 2.2 7.5E-05 31.9 12.2 100 36-137 31-152 (352)
318 2uvk_A YJHT; unknown function, 92.6 2.3 7.8E-05 31.4 13.9 140 5-148 20-224 (357)
319 3sov_A LRP-6, low-density lipo 92.6 2.3 7.9E-05 31.3 19.8 143 6-150 48-197 (318)
320 4a0p_A LRP6, LRP-6, low-densit 92.4 3.8 0.00013 33.3 21.8 164 5-172 92-260 (628)
321 3sbq_A Nitrous-oxide reductase 92.3 3.8 0.00013 33.2 14.3 145 17-162 300-492 (638)
322 3a9g_A Putative uncharacterize 92.1 2.8 9.7E-05 31.3 11.7 101 36-138 29-153 (354)
323 2xzh_A Clathrin heavy chain 1; 91.5 3.6 0.00012 31.1 20.6 151 5-159 78-299 (365)
324 2woz_A Kelch repeat and BTB do 91.2 3.2 0.00011 30.1 14.5 144 6-154 17-188 (318)
325 4gq2_M Nucleoporin NUP120; bet 89.9 0.53 1.8E-05 40.3 5.8 37 121-157 237-273 (950)
326 2p9w_A MAL S 1 allergenic prot 89.9 4.9 0.00017 30.1 15.8 96 14-112 99-218 (334)
327 4fhn_B Nucleoporin NUP120; pro 89.8 0.77 2.6E-05 40.1 6.8 37 121-157 239-275 (1139)
328 2ism_A Putative oxidoreductase 89.6 5 0.00017 29.9 12.6 91 4-97 41-153 (352)
329 1tl2_A L10, protein (tachylect 89.4 4.3 0.00015 28.7 9.4 133 5-144 4-157 (236)
330 2be1_A Serine/threonine-protei 86.2 0.64 2.2E-05 34.9 3.6 63 97-159 64-139 (339)
331 1cru_A Protein (soluble quinop 86.0 10 0.00036 29.4 13.4 103 36-138 27-162 (454)
332 3das_A Putative oxidoreductase 84.6 11 0.00037 28.3 13.5 109 30-138 26-158 (347)
333 3a9g_A Putative uncharacterize 84.3 11 0.00037 28.1 13.2 130 4-136 39-214 (354)
334 3sbq_A Nitrous-oxide reductase 83.7 2.7 9.2E-05 34.1 6.2 74 78-151 322-409 (638)
335 3das_A Putative oxidoreductase 83.6 12 0.00041 28.1 14.1 133 3-136 41-218 (347)
336 1tl2_A L10, protein (tachylect 83.1 1.1 3.8E-05 31.7 3.4 67 79-149 41-115 (236)
337 2g8s_A Glucose/sorbosone dehyd 82.4 13 0.00045 27.6 11.7 102 37-138 19-148 (353)
338 3f7f_A Nucleoporin NUP120; nuc 81.9 2.4 8.1E-05 35.2 5.4 36 122-159 224-259 (729)
339 1xi4_A Clathrin heavy chain; a 81.5 17 0.00059 33.0 10.7 105 4-112 76-191 (1630)
340 4gq2_M Nucleoporin NUP120; bet 80.7 3.6 0.00012 35.3 6.4 37 80-116 237-273 (950)
341 3ei3_A DNA damage-binding prot 78.6 34 0.0012 30.1 20.1 162 5-169 571-745 (1158)
342 1xi4_A Clathrin heavy chain; a 77.1 18 0.00062 32.9 9.5 142 14-158 124-297 (1630)
343 4fhn_B Nucleoporin NUP120; pro 72.9 3.5 0.00012 36.1 4.2 36 81-116 240-275 (1139)
344 3sre_A PON1, serum paraoxonase 72.7 28 0.00095 26.2 15.9 133 14-149 138-297 (355)
345 3ott_A Two-component system se 70.4 43 0.0015 27.4 15.9 127 16-149 494-625 (758)
346 3ott_A Two-component system se 70.4 43 0.0015 27.4 16.9 137 10-152 78-222 (758)
347 3f7f_A Nucleoporin NUP120; nuc 70.0 5.6 0.00019 33.1 4.5 28 6-33 232-259 (729)
348 3s94_A LRP-6, low-density lipo 67.7 48 0.0016 26.8 20.7 142 6-151 405-552 (619)
349 1wp5_A Topoisomerase IV; broke 63.4 42 0.0014 24.7 14.0 149 1-150 1-174 (323)
350 3uc1_A DNA gyrase subunit A; D 59.8 50 0.0017 24.4 12.0 145 4-149 2-175 (327)
351 3l6v_A GYRA, DNA gyrase subuni 57.3 60 0.002 24.5 14.0 149 1-150 3-180 (370)
352 1cru_A Protein (soluble quinop 57.2 65 0.0022 24.9 18.4 96 3-98 36-163 (454)
353 2xzh_A Clathrin heavy chain 1; 55.8 64 0.0022 24.4 16.3 130 14-151 48-190 (365)
354 3b7f_A Glycosyl hydrolase, BNR 53.7 66 0.0022 23.9 15.7 49 7-56 24-77 (394)
355 3no0_A DNA gyrase subunit A; D 48.2 73 0.0025 22.8 15.7 144 5-150 80-246 (276)
356 1bpo_A Protein (clathrin); cla 44.6 1.2E+02 0.0039 24.1 16.5 130 14-151 47-189 (494)
357 1suu_A DNA gyrase subunit A; t 38.9 1.1E+02 0.0038 22.2 16.8 148 2-150 5-181 (312)
358 4a9v_A PHOX; hydrolase, beta-p 29.4 2.3E+02 0.0078 23.0 9.0 59 79-137 476-548 (592)
359 3q6k_A 43.2 kDa salivary prote 27.5 2E+02 0.0069 21.8 17.9 135 15-150 123-306 (381)
360 1q47_A Semaphorin 3A; beta pro 27.2 2.3E+02 0.0078 22.3 9.0 66 80-145 405-487 (495)
361 3uc1_A DNA gyrase subunit A; D 26.9 1.9E+02 0.0065 21.2 15.3 145 5-150 109-279 (327)
362 3mwp_A Nucleoprotein; structur 26.6 17 0.00057 28.3 0.5 19 136-154 162-180 (577)
363 1zi0_A DNA gyrase subunit A; b 26.6 1.8E+02 0.0063 21.0 15.7 146 4-150 2-176 (307)
364 3zwu_A Alkaline phosphatase PH 26.2 2E+02 0.007 23.2 6.7 57 39-96 479-548 (592)
365 1olz_A Semaphorin 4D; developm 25.9 2.8E+02 0.0094 22.8 7.6 54 92-145 417-477 (663)
366 4a9v_A PHOX; hydrolase, beta-p 25.8 2.7E+02 0.0092 22.6 7.7 57 38-96 478-548 (592)
367 2wg3_C Hedgehog-interacting pr 25.3 2.4E+02 0.0082 21.9 15.0 103 37-139 15-158 (463)
368 3d8d_A Amyloid beta A4 precurs 24.2 1.2E+02 0.004 19.8 4.1 25 14-38 63-87 (148)
369 3zwu_A Alkaline phosphatase PH 23.3 3E+02 0.01 22.3 8.6 58 80-137 477-548 (592)
370 3al9_A Plexin-A2; beta-propell 21.5 3.1E+02 0.011 21.8 6.9 66 80-145 401-476 (539)
371 3s25_A Hypothetical 7-bladed b 20.5 2.4E+02 0.0083 20.2 10.6 63 85-150 151-216 (302)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=3.2e-28 Score=181.69 Aligned_cols=168 Identities=21% Similarity=0.378 Sum_probs=142.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.+|++|+.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.|++||++++. .....+.+|...|.
T Consensus 66 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~ 144 (304)
T 2ynn_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVM 144 (304)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEE
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEE
Confidence 4567999999999999999999999999999999999999999877655 578899999997652 33445778999999
Q ss_pred EEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEcc--CCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 83 AVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHP--NQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 83 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
+++|+| ++..|++|+.|+.|++||++.......+ .+...+..+.++| +++.|++|+.|++|++||++++++...+
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 999998 6789999999999999999876554443 3456788999987 6789999999999999999999999888
Q ss_pred CcccceeEEEEEeec
Q 042260 158 GLQYGLRTFLFYHQD 172 (174)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (174)
..+......+.+||+
T Consensus 225 ~~h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 225 EGHMSNVSFAVFHPT 239 (304)
T ss_dssp ECCSSCEEEEEECSS
T ss_pred CCCCCCEEEEEECCC
Confidence 766667777777776
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=4.3e-28 Score=184.51 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=132.5
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eE-EEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
+++.+|++|+.|++|++||+++++++..+..|...|.+++|++++. ++ +++.|+.|++||+++++.........+...
T Consensus 137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 216 (344)
T 4gqb_B 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL 216 (344)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecc
Confidence 3567899999999999999999999999999999999999999764 44 456789999999988754333333455667
Q ss_pred EEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 81 VMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 81 v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
+.+++|++ +++++++|+.||.|++||+++.+++.++. +...|.+++|+|++ ++|++|+.|++|++||++.+++....
T Consensus 217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~ 296 (344)
T 4gqb_B 217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQ 296 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEEC
T ss_pred ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEc
Confidence 99999998 56789999999999999999888777664 67889999999987 57899999999999999998766444
Q ss_pred CcccceeEEEEEee
Q 042260 158 GLQYGLRTFLFYHQ 171 (174)
Q Consensus 158 ~~~~~~~~~~~~~~ 171 (174)
.+...+.. +-+||
T Consensus 297 ~H~~~V~~-v~~sp 309 (344)
T 4gqb_B 297 AHRDFVRD-ATWSP 309 (344)
T ss_dssp CCSSCEEE-EEECS
T ss_pred CCCCCEEE-EEEeC
Confidence 44444443 44444
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=4.8e-28 Score=187.81 Aligned_cols=166 Identities=23% Similarity=0.422 Sum_probs=144.7
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.+|++|+.|++|++||+.+++....+..|...|.+++|+|++.++++ +.|+.|++||+.+. ..+..+.+|...|.
T Consensus 119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~V~ 196 (410)
T 1vyh_C 119 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHGHDHNVS 196 (410)
T ss_dssp SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CEEECCCCCSSCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEE
Confidence 4568999999999999999999999999999999999999999887665 57889999999765 45566778999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
+++|+|+++++++|+.|+.|++||+++..+..++. +...|.++.++|++..|++|+.|++|++||++++.+..++....
T Consensus 197 ~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~ 276 (410)
T 1vyh_C 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276 (410)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC
Confidence 99999999999999999999999999988877764 56789999999999999999999999999999999888876555
Q ss_pred ceeEEEEEee
Q 042260 162 GLRTFLFYHQ 171 (174)
Q Consensus 162 ~~~~~~~~~~ 171 (174)
....-+.++|
T Consensus 277 ~~v~~~~~~~ 286 (410)
T 1vyh_C 277 HVVECISWAP 286 (410)
T ss_dssp SCEEEEEECC
T ss_pred ceEEEEEEcC
Confidence 5555555554
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=180.26 Aligned_cols=167 Identities=19% Similarity=0.335 Sum_probs=142.6
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++.+|++|+.|++|++||+++++....+..+...+.+++|+|++.+++++ .|+.|++||++++ ..+..+..|...+
T Consensus 132 pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~--~~~~~~~~h~~~v 209 (321)
T 3ow8_A 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMPI 209 (321)
T ss_dssp TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCC
T ss_pred CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcccCCce
Confidence 356689999999999999999999998888888889999999999877654 6889999999876 4556678899999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
.+++|+|++++|++|+.|+.|++||++.......+. +...|.+++|+|+++.|++++.|++|++||++++.+...+...
T Consensus 210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h 289 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH 289 (321)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence 999999999999999999999999999887776664 5678999999999999999999999999999999998887543
Q ss_pred cceeEEEEEee
Q 042260 161 YGLRTFLFYHQ 171 (174)
Q Consensus 161 ~~~~~~~~~~~ 171 (174)
.....-+-+++
T Consensus 290 ~~~v~~v~~s~ 300 (321)
T 3ow8_A 290 QDQVWGVKYNG 300 (321)
T ss_dssp SSCEEEEEECT
T ss_pred CCcEEEEEECC
Confidence 33333333333
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.96 E-value=1.2e-27 Score=178.51 Aligned_cols=153 Identities=20% Similarity=0.431 Sum_probs=132.3
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++.+|++|+.|++|++||+++++.+..+..+..+|..+.|+|++.++++ +.|+.|++||++++ ..+..+.+|...|
T Consensus 23 p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--~~~~~~~~h~~~v 100 (304)
T 2ynn_A 23 PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYI 100 (304)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--cEEEEEeCCCCcE
Confidence 35678999999999999999999999999999999999999998877665 57889999999877 4566778999999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCC-eeEEee-cccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEY-ESRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.+++|+|+++++++|+.|+.|++||++.. .....+ .+...|.+++|+| ++..|++|+.|++|++||++.......+
T Consensus 101 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~ 179 (304)
T 2ynn_A 101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179 (304)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee
Confidence 99999999999999999999999999876 333444 4677899999999 5788999999999999999877655444
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=1.8e-27 Score=180.21 Aligned_cols=164 Identities=24% Similarity=0.368 Sum_probs=140.2
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
.+++++.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.+++||++++ .....+..|...+.+++
T Consensus 156 ~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~--~~~~~~~~h~~~v~~v~ 233 (340)
T 1got_B 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAIC 233 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--SEEEEECCCSSCEEEEE
T ss_pred cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCCcCCEEEEE
Confidence 3789999999999999999999999999999999999999887665 56899999999876 45666788999999999
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG 162 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 162 (174)
|+|++++|++|+.|+.|++||++.......+.+. ..|.+++|+|+++.|++|+.|+.|++||+....+...+.....
T Consensus 234 ~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~ 313 (340)
T 1got_B 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC
Confidence 9999999999999999999999988777666543 4799999999999999999999999999999888777654444
Q ss_pred eeEEEEEeec
Q 042260 163 LRTFLFYHQD 172 (174)
Q Consensus 163 ~~~~~~~~~~ 172 (174)
...-+-++++
T Consensus 314 ~v~~~~~s~d 323 (340)
T 1got_B 314 RVSCLGVTDD 323 (340)
T ss_dssp CEEEEEECTT
T ss_pred cEEEEEEcCC
Confidence 4444444443
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=181.37 Aligned_cols=164 Identities=20% Similarity=0.305 Sum_probs=133.9
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEe----ecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTI----QYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.|++|+.||+|++||+++++.+... ..|...|.+++|+|++.++++ +.|+.|++||++++ ..+..+.+|...|
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~--~~~~~~~~h~~~V 172 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--VVLSSYRAHAAQV 172 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--cEEEEEcCcCCce
Confidence 5789999999999999998765443 368889999999999887765 46889999999876 5567788999999
Q ss_pred EEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccC-CCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 82 MAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPN-QTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 82 ~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
.+++|++++ ..+++++.|+.|++||+++.+....+. +...+.+++|+|+ +++|++|+.||+|++||++++++..+
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 999999987 478999999999999999887766553 3456899999995 56788999999999999999999988
Q ss_pred cCcccceeEEEEEeec
Q 042260 157 LGLQYGLRTFLFYHQD 172 (174)
Q Consensus 157 ~~~~~~~~~~~~~~~~ 172 (174)
+..+...+.-+-++|+
T Consensus 253 ~~~h~~~v~~v~fsp~ 268 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPH 268 (344)
T ss_dssp EECCSSCEEEEEECSS
T ss_pred EcCCCCCEEEEEEccC
Confidence 8765555555556654
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=4.3e-27 Score=176.78 Aligned_cols=163 Identities=21% Similarity=0.398 Sum_probs=140.1
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++.+|++|+.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.+++||++. .....+.+|...+
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---~~~~~~~~h~~~v 151 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWV 151 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---CEEEEECCCSSCE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEeccCCcE
Confidence 35678999999999999999999999999999999999999998876655 5788999999964 3455677899999
Q ss_pred EEEEEeeC------CCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 82 MAVGFQCD------GNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 82 ~~~~~~~~------~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
.++.+.|. +..+++++.|+.|++||+++......+ .+..+|.+++|+|+++.|++|+.||+|++||++++++.
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999884 458999999999999999988776665 46788999999999999999999999999999999988
Q ss_pred eecCcccceeEEEE
Q 042260 155 CELGLQYGLRTFLF 168 (174)
Q Consensus 155 ~~~~~~~~~~~~~~ 168 (174)
..+..+..+....|
T Consensus 232 ~~~~~~~~v~~~~~ 245 (319)
T 3frx_A 232 YTLSAQDEVFSLAF 245 (319)
T ss_dssp EEEECCSCEEEEEE
T ss_pred EEecCCCcEEEEEE
Confidence 88776655544433
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=178.73 Aligned_cols=166 Identities=20% Similarity=0.406 Sum_probs=142.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.++++++.|++|++||+++++.+..+..+...+..++|+|++.+++++ .++.+++||+++++ ....+..|...+.
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~--~~~~~~~~~~~v~ 168 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFIL 168 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS--EEEEEECSSSCEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc--eeEEecCCCceEE
Confidence 45579999999999999999999999998888889999999998877765 67899999998763 4555677888999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
+++|+|++++|++|+.|+.|++||+++.+....+. +..+|.+++|+|+++.|++|+.|++|++||++...+...+....
T Consensus 169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 99999999999999999999999999988877775 56789999999999999999999999999999988887776444
Q ss_pred ceeEEEEEee
Q 042260 162 GLRTFLFYHQ 171 (174)
Q Consensus 162 ~~~~~~~~~~ 171 (174)
....-+-++|
T Consensus 249 ~~v~~~~~sp 258 (321)
T 3ow8_A 249 SWVLNVAFCP 258 (321)
T ss_dssp SCEEEEEECT
T ss_pred CceEEEEECC
Confidence 4444444444
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=6.6e-27 Score=178.23 Aligned_cols=167 Identities=24% Similarity=0.335 Sum_probs=140.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC--CceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN--KHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++..|++++.|++|++||+++++.+..+..|...|.+++++|. +.++ +++.|+.+++||++++ .+...+..|...
T Consensus 165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~--~~~~~~~~h~~~ 242 (354)
T 2pbi_B 165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG--QCVQAFETHESD 242 (354)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC--CEEEEECCCSSC
T ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--cEEEEecCCCCC
Confidence 3457899999999999999999999999999999999999874 4444 4567899999999887 456667889999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
|.+++|+|++..|++|+.|+.|++||++.......+.. ...+.+++|+|+++.|++|+.|++|++||+.++.+...+
T Consensus 243 v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 243 VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence 99999999999999999999999999998776655543 246899999999999999999999999999998888777
Q ss_pred CcccceeEEEEEeec
Q 042260 158 GLQYGLRTFLFYHQD 172 (174)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (174)
........-+-++|+
T Consensus 323 ~~h~~~v~~l~~spd 337 (354)
T 2pbi_B 323 FGHENRVSTLRVSPD 337 (354)
T ss_dssp CCCSSCEEEEEECTT
T ss_pred ECCCCcEEEEEECCC
Confidence 555555555555554
No 11
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=5e-27 Score=182.08 Aligned_cols=167 Identities=25% Similarity=0.460 Sum_probs=144.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++..|++|+.|++|++||+++++++..+..|...|..+.++|++.++++ +.|+.+++||++++ .....+..|...+.
T Consensus 203 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~--~~~~~~~~h~~~v~ 280 (410)
T 1vyh_C 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK--ECKAELREHRHVVE 280 (410)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC--ceeeEecCCCceEE
Confidence 4568999999999999999999999999999989999999999887765 56889999999876 44556778999999
Q ss_pred EEEEeeC--------------------CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCC
Q 042260 83 AVGFQCD--------------------GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNG 141 (174)
Q Consensus 83 ~~~~~~~--------------------~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~ 141 (174)
+++|+|+ +.++++|+.|+.|++||+++..+...+. +...|.+++|+|+++.|++|+.|+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred EEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 9999985 6789999999999999999988877664 667899999999999999999999
Q ss_pred cEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260 142 NIRVWDLTANSCSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 142 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
+|++||++++++...+........-+-+|++
T Consensus 361 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 391 (410)
T 1vyh_C 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 391 (410)
T ss_dssp EEEEECCTTSCCCEEEECCSSCEEEEEECSS
T ss_pred eEEEEECCCCceEEEEcCCCCcEEEEEEcCC
Confidence 9999999999988887655555555666654
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=2.5e-26 Score=171.36 Aligned_cols=167 Identities=24% Similarity=0.428 Sum_probs=141.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++.+|++|+.|++|++||..+++....+..|...|.+++|+|++.++++ +.|+.+++||++++ ..+..+..|...+
T Consensus 33 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~v 110 (312)
T 4ery_A 33 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYV 110 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCE
T ss_pred CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--cEEEEEcCCCCCE
Confidence 35668999999999999999999999999889899999999999887665 56889999999876 4456677899999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC-c
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG-L 159 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~ 159 (174)
.+++|+++++++++|+.|+.|++||+++..+...+. +..+|.+++|+|+++.|++++.|+.|++||++++++...+. .
T Consensus 111 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 190 (312)
T 4ery_A 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190 (312)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc
Confidence 999999999999999999999999999887776664 56789999999999999999999999999999988776653 2
Q ss_pred ccceeEEEEEee
Q 042260 160 QYGLRTFLFYHQ 171 (174)
Q Consensus 160 ~~~~~~~~~~~~ 171 (174)
.......+.+++
T Consensus 191 ~~~~~~~~~~~~ 202 (312)
T 4ery_A 191 DNPPVSFVKFSP 202 (312)
T ss_dssp SCCCEEEEEECT
T ss_pred CCCceEEEEECC
Confidence 223344444444
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.95 E-value=4.3e-26 Score=172.58 Aligned_cols=169 Identities=17% Similarity=0.319 Sum_probs=142.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCC--CCeEEeecCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSP--QPVMSYDQHTN 79 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~--~~~~~~~~~~~ 79 (174)
+++.+|++|+.|++|++||..+++.+..+..+...|.+++|+|++.++++ +.|+.+++|++.+... .....+.+|..
T Consensus 65 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~ 144 (340)
T 1got_B 65 TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc
Confidence 35678999999999999999999999999989889999999999887765 4688999999976532 23445678999
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
.+.++.|++++. +++++.|+.|++||+++......+. +...|.+++|+|+++.+++|+.|++|++||++++.+...+.
T Consensus 145 ~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~ 223 (340)
T 1got_B 145 YLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223 (340)
T ss_dssp CEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred cEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence 999999988765 8999999999999999988877764 66789999999999999999999999999999998888776
Q ss_pred cccceeEEEEEeec
Q 042260 159 LQYGLRTFLFYHQD 172 (174)
Q Consensus 159 ~~~~~~~~~~~~~~ 172 (174)
.......-+-++|+
T Consensus 224 ~h~~~v~~v~~~p~ 237 (340)
T 1got_B 224 GHESDINAICFFPN 237 (340)
T ss_dssp CCSSCEEEEEECTT
T ss_pred CCcCCEEEEEEcCC
Confidence 55554554555543
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=2.4e-26 Score=172.73 Aligned_cols=166 Identities=22% Similarity=0.355 Sum_probs=136.0
Q ss_pred cEEEEEeeCCCcEEEEECCC-----CceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 5 SVILATASYDKTIKFWEAKS-----GRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
+.+|+|||.|++|++||+.+ +..+..+..|...|.+++|+|++.++++ +.|+.|++||++++ .....+.+|.
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~--~~~~~~~~h~ 107 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHK 107 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCS
T ss_pred ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC--CeeEEEccCC
Confidence 46899999999999999864 3456778889999999999999887665 56899999999877 4456678899
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCC------CEEEEeeCCCcEEEEeCCCCc
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ------TELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~s~~~d~~i~iwd~~~~~ 152 (174)
..|.+++|+++++++++|+.|+.|++||++.........+...|.++.+.|+. ..+++++.|+.|++||++..+
T Consensus 108 ~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 187 (319)
T 3frx_A 108 SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187 (319)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence 99999999999999999999999999999876655545677889999999854 479999999999999999988
Q ss_pred ceeecCcccceeEEEEEeec
Q 042260 153 CSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~ 172 (174)
+..++........-+-++|+
T Consensus 188 ~~~~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 188 IEADFIGHNSNINTLTASPD 207 (319)
T ss_dssp EEEEECCCCSCEEEEEECTT
T ss_pred hheeecCCCCcEEEEEEcCC
Confidence 77776544444444444443
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.95 E-value=1.1e-26 Score=177.19 Aligned_cols=166 Identities=14% Similarity=0.238 Sum_probs=139.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc--eEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH--YLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
+++.+|++|+.|++|++||+++++.+..+..|...|.+++|++++. +++++.|+.|++||+++++.........+...
T Consensus 149 pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 228 (357)
T 4g56_B 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI 228 (357)
T ss_dssp SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccc
Confidence 3567899999999999999999999999999999999999998753 45566789999999988765554445567788
Q ss_pred EEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 81 VMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 81 v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
+.+++|+|+ +.+|++|+.|+.|++||++++.+...+. +...|.+++|+|++ ++|++|+.|++|++||++++++...+
T Consensus 229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred ccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence 999999986 5689999999999999999887776664 56789999999987 57899999999999999999888777
Q ss_pred CcccceeEEEE
Q 042260 158 GLQYGLRTFLF 168 (174)
Q Consensus 158 ~~~~~~~~~~~ 168 (174)
.+...+....|
T Consensus 309 ~H~~~V~~vaf 319 (357)
T 4g56_B 309 SHRDFVTGVAW 319 (357)
T ss_dssp CCSSCEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 76665555444
No 16
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=3.8e-26 Score=169.92 Aligned_cols=170 Identities=16% Similarity=0.237 Sum_probs=133.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCC--CceeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecC
Q 042260 3 QPSVILATASYDKTIKFWEAKS--GRCYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
.++.+|+||+.|++|++||+.+ ++.+..+..|...|.+++|++. +.+++ ++.|+.|++||++++.......+..|
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h 98 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH 98 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCC
T ss_pred CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecC
Confidence 3567899999999999999874 4667888899999999999863 55554 56789999999987755556667789
Q ss_pred CCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCe---eEEeecccCcEEEEEEccC-------------CCEEEEeeC
Q 042260 78 TNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPV---CQMEYESRAAVNTVVLHPN-------------QTELISGDQ 139 (174)
Q Consensus 78 ~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~~-------------~~~l~s~~~ 139 (174)
...|.+++|+|+ +.+|++++.|+.|++||++... ......+...|.+++|+|+ ++.|++|+.
T Consensus 99 ~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~ 178 (297)
T 2pm7_B 99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET
T ss_pred CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC
Confidence 999999999997 8899999999999999998652 1222356778999999997 468999999
Q ss_pred CCcEEEEeCCCCc----ceeecCcccceeEEEEEeec
Q 042260 140 NGNIRVWDLTANS----CSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 140 d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~ 172 (174)
|++|++||++.+. +...+..+.....-+-++|+
T Consensus 179 D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~ 215 (297)
T 2pm7_B 179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (297)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCC
Confidence 9999999998766 33344433444444445553
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=175.67 Aligned_cols=168 Identities=20% Similarity=0.335 Sum_probs=133.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEE--e-ecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRT--I-QYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
++.+|++|+.|++|++||+++++.... + ..|...|.+++|+|++.++++ +.|+.+++||+..+.......+.+|..
T Consensus 27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~ 106 (345)
T 3fm0_A 27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN 106 (345)
T ss_dssp TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS
T ss_pred CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC
Confidence 567899999999999999988764322 2 457888999999999887765 468899999998765556677889999
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe---eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc--
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV---CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC-- 153 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-- 153 (174)
.|.+++|+|++++|++|+.|+.|++||++... +...+ .+...|.+++|+|+++.|++|+.|++|++||++.+..
T Consensus 107 ~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence 99999999999999999999999999997642 23333 4567899999999999999999999999999988753
Q ss_pred eeecCcccceeEEEEEee
Q 042260 154 SCELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~ 171 (174)
...+........-+-++|
T Consensus 187 ~~~~~~h~~~v~~l~~sp 204 (345)
T 3fm0_A 187 CATLEGHESTVWSLAFDP 204 (345)
T ss_dssp EEEECCCSSCEEEEEECT
T ss_pred EEEecCCCCceEEEEECC
Confidence 344443333334444444
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=2.3e-26 Score=174.23 Aligned_cols=147 Identities=18% Similarity=0.429 Sum_probs=121.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.++++|+.|++|++||+++++.+..+..|...|.+++|+|++..+++ +.|+.|++||+.............|...+.
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS 166 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence 4568999999999999999999999999999999999999999876654 578999999997431111111126788899
Q ss_pred EEEEeeCC----------CEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 83 AVGFQCDG----------NWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 83 ~~~~~~~~----------~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
+++|+|++ .++++++.|+.|++||.+. .....+ .+...|.+++|+|+++.|++|+.|+.|++||++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999876 7899999999999999654 333333 56788999999999999999999999999999543
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.3e-26 Score=170.20 Aligned_cols=165 Identities=23% Similarity=0.367 Sum_probs=124.2
Q ss_pred EEEEeeCCCcEEEEECCCC--ceeEEe-ec-CCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCC-----CCCeEEeec
Q 042260 7 ILATASYDKTIKFWEAKSG--RCYRTI-QY-PDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSS-----PQPVMSYDQ 76 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~-----~~~~~~~~~ 76 (174)
+|++|+.|++|++||++++ +....+ .. |...|.+++|+|++.++++ +.|+.|++||++... ......+.+
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 105 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence 7999999999999999875 344445 33 7788999999999887765 468999999985421 234456778
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC----eeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP----VCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
|...|.+++|+|++++|++|+.|+.|++||++.. .+...+ .+...|.+++|+|+++.|++|+.|++|++||++.+
T Consensus 106 h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp ---CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999999999999999999532 344444 46778999999999999999999999999999876
Q ss_pred --cceeecCcccceeEEEEEee
Q 042260 152 --SCSCELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~ 171 (174)
.+...+..+.....-+-+++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~ 207 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDK 207 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECC
T ss_pred CeeEEEEccCCCCcEEEEEecC
Confidence 45555543333343344444
No 20
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=4.7e-26 Score=174.87 Aligned_cols=152 Identities=26% Similarity=0.434 Sum_probs=128.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEe-----ecCCCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCCCCCeEEeecC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTI-----QYPDSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
+..|++|+.|++|++||+++++.+..+ ..|...|.++.+++ ++.+++ ++.|+.|++||++... .....+.+|
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h 248 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGH 248 (380)
T ss_dssp SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCC
T ss_pred CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCc
Confidence 446899999999999999999988776 45677899999987 555554 5678999999997543 345667889
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------CcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--------AAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
...|.+++|+|++++|++|+.|+.|++||+++......+... ..|.+++|+|+++.|++|+.||.|++||+.
T Consensus 249 ~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 249 EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 999999999999999999999999999999998876655321 238899999999999999999999999999
Q ss_pred CCcceeec
Q 042260 150 ANSCSCEL 157 (174)
Q Consensus 150 ~~~~~~~~ 157 (174)
.+++...+
T Consensus 329 ~~~~~~~~ 336 (380)
T 3iz6_a 329 LAEMVLNL 336 (380)
T ss_dssp TCCEEEEE
T ss_pred CCceEEEE
Confidence 88877665
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=1.8e-25 Score=166.67 Aligned_cols=154 Identities=26% Similarity=0.522 Sum_probs=135.3
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++.+|++|+.|++|++||+++++.+..+..|...|.++.|+|++.++++ +.|+.+++||++++ .....+..|...+
T Consensus 75 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v 152 (312)
T 4ery_A 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--KCLKTLPAHSDPV 152 (312)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCE
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--EEEEEecCCCCcE
Confidence 35678999999999999999999999999999999999999998877665 56889999999876 4456677899999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
.+++|+++++++++++.|+.|++||+++......+ .+..++..++|+|+++.|++++.|+.|++||++.+++...+.
T Consensus 153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 99999999999999999999999999987766555 345679999999999999999999999999999988776654
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.95 E-value=1.6e-25 Score=169.54 Aligned_cols=165 Identities=17% Similarity=0.272 Sum_probs=129.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCC-------ceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEee
Q 042260 4 PSVILATASYDKTIKFWEAKSG-------RCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~ 75 (174)
++.+|+||+.|++|++||+.++ .....+..|...|.+++|+|++.++++ +.|+.+++||++++ .....+.
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~ 115 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFV 115 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEc
Confidence 5779999999999999998653 345667788889999999999887665 56899999999876 4456678
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee---cccCcEEEEEEccCC----------CEEEEeeCCCc
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQ----------TELISGDQNGN 142 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~s~~~d~~ 142 (174)
+|...|.+++|+|++++|++++.|+.|++||+......... .+...|.+++|+|++ ..+++++.|+.
T Consensus 116 ~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 195 (343)
T 2xzm_R 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195 (343)
T ss_dssp CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE
Confidence 89999999999999999999999999999999854433222 356779999999987 68999999999
Q ss_pred EEEEeCCCCcceeecCcccceeEEEEEee
Q 042260 143 IRVWDLTANSCSCELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 143 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 171 (174)
|++||.+ ..+...+........-+-++|
T Consensus 196 i~iwd~~-~~~~~~~~~h~~~v~~~~~s~ 223 (343)
T 2xzm_R 196 LKVWNTN-FQIRYTFKAHESNVNHLSISP 223 (343)
T ss_dssp EEEEETT-TEEEEEEECCSSCEEEEEECT
T ss_pred EEEEcCC-CceeEEEcCccccceEEEECC
Confidence 9999943 444444433333333333343
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=2.1e-25 Score=169.89 Aligned_cols=168 Identities=18% Similarity=0.278 Sum_probs=141.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCC----CCCeEEeecCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSS----PQPVMSYDQHT 78 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~----~~~~~~~~~~~ 78 (174)
++..|+|||.|++|++||..+++....+..+...|..++|+|++..++++ .|+.+++|++.... ......+..|.
T Consensus 75 d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~ 154 (354)
T 2pbi_B 75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT 154 (354)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC
Confidence 56789999999999999999999998888888889999999999887765 68889999986432 12344566899
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEcc--CCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHP--NQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
..+.++.|+++++.|++++.|+.|++||+++..+...+. +...|.++.++| +++.|++|+.||+|++||++++.+..
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999999999999999999999999999999988777764 567899999988 46799999999999999999999888
Q ss_pred ecCcccceeEEEEEee
Q 042260 156 ELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 156 ~~~~~~~~~~~~~~~~ 171 (174)
.+........-+-++|
T Consensus 235 ~~~~h~~~v~~v~~~p 250 (354)
T 2pbi_B 235 AFETHESDVNSVRYYP 250 (354)
T ss_dssp EECCCSSCEEEEEECT
T ss_pred EecCCCCCeEEEEEeC
Confidence 8765544444444454
No 24
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.94 E-value=6.8e-26 Score=173.94 Aligned_cols=147 Identities=18% Similarity=0.479 Sum_probs=123.4
Q ss_pred CcEEEEEeeCCCcEEEEECC-CCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecC----
Q 042260 4 PSVILATASYDKTIKFWEAK-SGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQH---- 77 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~---- 77 (174)
++.+|++|+.|++|++||++ +++.+..+..|...|.+++|+|++.++++ +.|+.+++||++++. .+..+..+
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~ 294 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRN 294 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSSS
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc--EEEEeccccccc
Confidence 45689999999999999997 45778888889999999999999887665 568899999998763 23333322
Q ss_pred ---CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 78 ---TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 78 ---~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
...+.+++|+++|+++++|+.||.|++||+........+ .|...|.+++|+|++..|++|+.|++|++|++.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 234889999999999999999999999999887766554 356789999999999999999999999999998
Q ss_pred CCc
Q 042260 150 ANS 152 (174)
Q Consensus 150 ~~~ 152 (174)
..+
T Consensus 375 ~~~ 377 (380)
T 3iz6_a 375 GHR 377 (380)
T ss_dssp SSS
T ss_pred CCc
Confidence 754
No 25
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.94 E-value=6.7e-25 Score=177.85 Aligned_cols=148 Identities=20% Similarity=0.361 Sum_probs=127.7
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEee-------cCC
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYD-------QHT 78 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~-------~~~ 78 (174)
.|++|+.|++|++||..++++...+..|...|.+++|+|++.++++ +.|+.|++||+.+++ ....+. +|.
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHS 239 (611)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSS
T ss_pred EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc--EeeeeccccccccccC
Confidence 6999999999999999999999999999999999999999887765 578999999998764 233332 689
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee------------------------------------------
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY------------------------------------------ 116 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~------------------------------------------ 116 (174)
..|.+++|+|++++|++++.|+.|++||+++..+..++
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~ 319 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV 319 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence 99999999999999999999999999999876544322
Q ss_pred --cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 117 --ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 117 --~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
.|...|.+++|+|+++.|++++.|++|++||++++.+...
T Consensus 320 ~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 3456799999999999999999999999999998876544
No 26
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=8.8e-25 Score=168.44 Aligned_cols=146 Identities=21% Similarity=0.459 Sum_probs=123.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.+|++|+.|++|++||+++++.+..+..|...|.+++|+|++..+++ +.|+.+++||+++++ ....+. +...+.
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~-~~~~v~ 210 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--CSLTLS-IEDGVT 210 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEE-CSSCEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe--eEEEEE-cCCCcE
Confidence 4668999999999999999999999999999999999999998876654 578899999998763 333333 567799
Q ss_pred EEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEee--------cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 83 AVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY--------ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 83 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
++++++ +++++++|+.|+.|++||+++......+ .+...|.+++|+|+++.|++|+.|++|++||++...
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 999998 8999999999999999999987765544 356789999999999999999999999999998643
No 27
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=6.4e-25 Score=163.29 Aligned_cols=148 Identities=20% Similarity=0.354 Sum_probs=121.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCC--CceE-EEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPN--KHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+.+|+||+.|++|++||+++++ .+..+..|...|.+++|+|+ +.++ +++.|+.+++||++.+.......+..|..
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence 5689999999999999998874 45666678889999999996 5555 45678999999998764333455678999
Q ss_pred CEEEEEEeeC-------------CCEEEEecCCCcEEEEeCCCCe----eEEee-cccCcEEEEEEccCC---CEEEEee
Q 042260 80 NVMAVGFQCD-------------GNWMYSGSEDGTVKIWDLRAPV----CQMEY-ESRAAVNTVVLHPNQ---TELISGD 138 (174)
Q Consensus 80 ~v~~~~~~~~-------------~~~l~t~~~dg~v~iwd~~~~~----~~~~~-~~~~~v~~~~~~~~~---~~l~s~~ 138 (174)
.+.+++|+|+ +++|++|+.|+.|++||++... ....+ .|...|.+++|+|++ ..|++++
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s 226 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence 9999999986 5799999999999999997643 33344 467889999999985 7899999
Q ss_pred CCCcEEEEeCCCCc
Q 042260 139 QNGNIRVWDLTANS 152 (174)
Q Consensus 139 ~d~~i~iwd~~~~~ 152 (174)
.|++|++||++...
T Consensus 227 ~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 227 QDRTCIIWTQDNEQ 240 (297)
T ss_dssp TTSCEEEEEESSTT
T ss_pred CCCcEEEEEeCCCC
Confidence 99999999998743
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.7e-25 Score=166.36 Aligned_cols=148 Identities=20% Similarity=0.366 Sum_probs=119.1
Q ss_pred CcEEEEEeeCCCcEEEEECCC-------CceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCC--CCCeEE
Q 042260 4 PSVILATASYDKTIKFWEAKS-------GRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSS--PQPVMS 73 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~--~~~~~~ 73 (174)
++.+|++|+.|++|++||.+. .+.+..+..|...|.+++|+|++.++++ +.|+.+++||++... ..++..
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~ 148 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV 148 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence 466899999999999999853 3456677788889999999999887765 468899999995432 234556
Q ss_pred eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC--eeEEee-cccCcEEEEEEccC--CCEEEEeeCCCcEEEEeC
Q 042260 74 YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP--VCQMEY-ESRAAVNTVVLHPN--QTELISGDQNGNIRVWDL 148 (174)
Q Consensus 74 ~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~--~~~~~~-~~~~~v~~~~~~~~--~~~l~s~~~d~~i~iwd~ 148 (174)
+..|...|.+++|+|++++|++|+.|+.|++||.+.. .+...+ .|...|.+++|+|+ +..|++|+.|++|++||+
T Consensus 149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 7789999999999999999999999999999998765 444455 46788999999998 668999999999999999
Q ss_pred CCC
Q 042260 149 TAN 151 (174)
Q Consensus 149 ~~~ 151 (174)
+.+
T Consensus 229 ~~~ 231 (330)
T 2hes_X 229 MGD 231 (330)
T ss_dssp EEE
T ss_pred cCC
Confidence 754
No 29
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.94 E-value=7e-26 Score=172.54 Aligned_cols=168 Identities=13% Similarity=0.143 Sum_probs=126.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc---eeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCC-CCeEEeec-C
Q 042260 4 PSVILATASYDKTIKFWEAKSGR---CYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSP-QPVMSYDQ-H 77 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~-~~~~~~~~-~ 77 (174)
++.+|++++.|++|++||+++++ ....+..|...|.+++|+|++.+++ ++.|+.+++||++.++. .....+.. |
T Consensus 66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence 46789999999999999999887 5666667888999999999887655 45788999999987642 23444556 8
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC------------------CeeEEeecccCcEEEEEEccCCCEEEEeeC
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA------------------PVCQMEYESRAAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 139 (174)
...+.+++|++++++|++++.|+.|++||++. ..+...+.+...|.+++|+|+++.|++++.
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 225 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH 225 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC
Confidence 99999999999999999999999999999852 334444566788999999999999999999
Q ss_pred CCcEEEEeCCCCcc----eeecCcccceeEEEEEee
Q 042260 140 NGNIRVWDLTANSC----SCELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 140 d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~ 171 (174)
|+.|++||++++.+ ...+........-+-+++
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 261 (377)
T 3dwl_C 226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN 261 (377)
T ss_dssp TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE
T ss_pred CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC
Confidence 99999999999887 555554444444444444
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=3.6e-25 Score=170.68 Aligned_cols=154 Identities=17% Similarity=0.248 Sum_probs=131.0
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.++.+|++|+.|++|++||+++++....+..|...|.+++|+|++.++++ +.|+.+++||+++++ ....+..|...+
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v 184 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGHRATV 184 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--CCEEEECCSSCE
T ss_pred cCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--CceEEcCCCCcE
Confidence 35678999999999999999999888887889899999999999876665 568899999998764 455677899999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc----cCcEEE---------------------EEEccCCCEEEE
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES----RAAVNT---------------------VVLHPNQTELIS 136 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~----~~~v~~---------------------~~~~~~~~~l~s 136 (174)
.+++|++++++|++++.|+.|++||+++......+.. ...+.+ ++|+|+++.|++
T Consensus 185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 9999999999999999999999999999887766642 234444 455788999999
Q ss_pred eeCCCcEEEEeCCCCcceeecC
Q 042260 137 GDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 137 ~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
|+.||.|++||++++....++.
T Consensus 265 ~~~dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 265 GHVSGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp EETTSCEEEEETTTCCEEEEEC
T ss_pred EcCCCeEEEEECCCCceeEEcc
Confidence 9999999999999988776664
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=1.5e-24 Score=167.15 Aligned_cols=152 Identities=26% Similarity=0.474 Sum_probs=129.8
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCC------------------CCeEEEEEcCCCceEEE-ecCCcEEEEEc
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPD------------------SQVNRLEITPNKHYLAA-AGNPHIRLFDV 63 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~~~-~~d~~i~i~d~ 63 (174)
+++.+|++|+ |+++++|++.+++.+..+..+. ..|.+++|+|++.++++ +.|+.|++||+
T Consensus 74 pdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~ 152 (393)
T 1erj_A 74 NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 152 (393)
T ss_dssp TTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 3566788876 7899999999998877765432 13889999999887765 46889999999
Q ss_pred CCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc-CCCEEEEeeCCCc
Q 042260 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP-NQTELISGDQNGN 142 (174)
Q Consensus 64 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~ 142 (174)
.++ .....+.+|...|.+++|++++++|++++.|+.|++||+++..+...+.....+.+++++| +++.|++|+.|+.
T Consensus 153 ~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~ 230 (393)
T 1erj_A 153 ENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 230 (393)
T ss_dssp TTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSC
T ss_pred CCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCc
Confidence 876 4456678899999999999999999999999999999999998888888888899999999 8899999999999
Q ss_pred EEEEeCCCCcceeec
Q 042260 143 IRVWDLTANSCSCEL 157 (174)
Q Consensus 143 i~iwd~~~~~~~~~~ 157 (174)
|++||++++.+...+
T Consensus 231 v~iwd~~~~~~~~~~ 245 (393)
T 1erj_A 231 VRVWDSETGFLVERL 245 (393)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred EEEEECCCCcEEEee
Confidence 999999988776554
No 32
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=6.3e-26 Score=170.20 Aligned_cols=169 Identities=14% Similarity=0.197 Sum_probs=130.7
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCC--Cc-eEEEecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPN--KH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
++.+|+||+.|++|++||+++++ .+..+..|...|.+++|++. +. +++++.|+.|++||++++.......+..|.
T Consensus 24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~ 103 (316)
T 3bg1_A 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD 103 (316)
T ss_dssp GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC
Confidence 56789999999999999998775 46778889999999999752 44 455567999999999876555566677899
Q ss_pred CCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCee---EEee-cccCcEEEEEEccC-----------------CCEEE
Q 042260 79 NNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVC---QMEY-ESRAAVNTVVLHPN-----------------QTELI 135 (174)
Q Consensus 79 ~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~---~~~~-~~~~~v~~~~~~~~-----------------~~~l~ 135 (174)
..|.+++|+|+ +.+|++|+.|+.|++||++.... ...+ .+...|.+++|+|+ +..|+
T Consensus 104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 183 (316)
T 3bg1_A 104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA 183 (316)
T ss_dssp SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE
T ss_pred CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEE
Confidence 99999999997 78999999999999999986521 1222 34567899999987 36899
Q ss_pred EeeCCCcEEEEeCCCC---cceeecCcccceeEEEEEeec
Q 042260 136 SGDQNGNIRVWDLTAN---SCSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 136 s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~ 172 (174)
+|+.|++|++||++.. .+...+..+.....-+-++|+
T Consensus 184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~ 223 (316)
T 3bg1_A 184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS 223 (316)
T ss_dssp CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence 9999999999999754 244444433344444444443
No 33
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.9e-26 Score=180.37 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=124.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCce-----------eEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRC-----------YRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMS 73 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 73 (174)
+.+||+++.|++|++||+.+++. ...+..|...|.+++|++.+.+++++.|+.|++||++++. .+...
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~-~~~~~ 303 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE-VPSFY 303 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS-SCSEE
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC-CceEE
Confidence 56899999999999999987642 2356677889999999987766667789999999998653 33445
Q ss_pred eecCCCCEEEE--EEeeCC-CEEEEecCCCcEEEEeCCCCeeEEeecc--c-CcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 74 YDQHTNNVMAV--GFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEYES--R-AAVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 74 ~~~~~~~v~~~--~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~-~~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
+..|...|.++ .|++++ .+|+||+.|++|+|||+++..+...+.. . ..|.+++|+|++..+++++.|++|++||
T Consensus 304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd 383 (524)
T 2j04_B 304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVP 383 (524)
T ss_dssp EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEE
T ss_pred eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEE
Confidence 67899999999 467777 8999999999999999988665444322 1 2478999999999999999999999999
Q ss_pred CCCCcceeecC
Q 042260 148 LTANSCSCELG 158 (174)
Q Consensus 148 ~~~~~~~~~~~ 158 (174)
++++.+...+.
T Consensus 384 ~~~~~~~~~l~ 394 (524)
T 2j04_B 384 SRAAFAVHPLV 394 (524)
T ss_dssp TTCTTCCEEEE
T ss_pred Ccccccceeee
Confidence 99988866553
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.94 E-value=3.4e-25 Score=169.01 Aligned_cols=156 Identities=21% Similarity=0.331 Sum_probs=123.1
Q ss_pred CCcEEEEEeeC------CCcEEEEECCCCcee----EEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCe-
Q 042260 3 QPSVILATASY------DKTIKFWEAKSGRCY----RTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPV- 71 (174)
Q Consensus 3 ~~~~~l~s~s~------D~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~- 71 (174)
+++.+|++||. |++|++|+..++... .....|...|.+++|+|++.+++++.|+.|++||+.+++....
T Consensus 52 pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~ 131 (357)
T 4g56_B 52 RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN 131 (357)
T ss_dssp SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC
T ss_pred CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE
Confidence 46789999997 788999998776542 2334567789999999999999999999999999987654332
Q ss_pred -EEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCC-EEEEeeCCCcEEEEeC
Q 042260 72 -MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQT-ELISGDQNGNIRVWDL 148 (174)
Q Consensus 72 -~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~ 148 (174)
....+|...|.+++|+|++++|++|+.|+.|++||+++..+...+. +...|.+++|+|++. .+++++.|++|++||+
T Consensus 132 ~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 132 KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence 3345789999999999999999999999999999999998887775 567899999999875 7889999999999999
Q ss_pred CCCcceeecC
Q 042260 149 TANSCSCELG 158 (174)
Q Consensus 149 ~~~~~~~~~~ 158 (174)
+++++.....
T Consensus 212 ~~~~~~~~~~ 221 (357)
T 4g56_B 212 RKPKPATRID 221 (357)
T ss_dssp TSSSCBCBCC
T ss_pred CCCceeeeee
Confidence 9887765543
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.94 E-value=5.3e-25 Score=166.97 Aligned_cols=146 Identities=22% Similarity=0.393 Sum_probs=124.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCC--ceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCC-CCeEEeecCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSG--RCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSP-QPVMSYDQHTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~-~~~~~~~~~~~ 79 (174)
++.+|++|+.|+++++||..++ +++..+..|...|.+++|+|++.++++ +.|+.+++||++.+.. .....+..|..
T Consensus 72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 5678999999999999998776 456778889899999999999887765 5688999999976532 33455678999
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe--eEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV--CQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.+.+++|+|++++|++|+.|+.|++||++... +..++ .+...|.+++|+|+++.|++|+.|++|++||..
T Consensus 152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 99999999999999999999999999998764 23344 467889999999999999999999999999974
No 36
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=1.2e-24 Score=166.43 Aligned_cols=164 Identities=9% Similarity=0.052 Sum_probs=133.2
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEe
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQ 87 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 87 (174)
+++++.|++|++||+++++++..+. +...|.+++|+|++.+++++.++.+++|+..+++.........|...+.+++|+
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs 228 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFI 228 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEE
T ss_pred EEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEc
Confidence 3567789999999999999988886 566799999999999999888888999998776543333445688889999999
Q ss_pred eCCCEEEEecCCC----cEEEEeCCCCeeE----Ee-ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec-
Q 042260 88 CDGNWMYSGSEDG----TVKIWDLRAPVCQ----ME-YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL- 157 (174)
Q Consensus 88 ~~~~~l~t~~~dg----~v~iwd~~~~~~~----~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 157 (174)
|+++.+++++.|+ .+++||+...... .. ..+..+|.+++|+|++++|++|+.|++|+|||++++++...+
T Consensus 229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~ 308 (365)
T 4h5i_A 229 ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK 308 (365)
T ss_dssp ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec
Confidence 9999999999887 6888998765432 12 245678999999999999999999999999999999988874
Q ss_pred CcccceeEEEEEeec
Q 042260 158 GLQYGLRTFLFYHQD 172 (174)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (174)
..+...+.-+-++||
T Consensus 309 ~gH~~~V~~v~fSpd 323 (365)
T 4h5i_A 309 QAHSFAITEVTISPD 323 (365)
T ss_dssp TSSSSCEEEEEECTT
T ss_pred CcccCCEEEEEECCC
Confidence 544555555556665
No 37
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=2.6e-24 Score=176.47 Aligned_cols=166 Identities=22% Similarity=0.370 Sum_probs=135.7
Q ss_pred cEEEEEeeCCCcEEEEECCCC-----ceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 5 SVILATASYDKTIKFWEAKSG-----RCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
+.+|+|||.|++|++||+.++ .....+..|...|.+++|+|++.++++ +.|+.|++||+.++ .....+.+|.
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~ 472 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHT 472 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCS
T ss_pred CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--cceeEEeCCC
Confidence 468999999999999998753 345677889999999999999887765 56889999999876 4456677899
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee----cccCcEEEEEEccCC--CEEEEeeCCCcEEEEeCCCCc
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQ--TELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~ 152 (174)
..|.+++|++++++|++|+.|+.|++||+......... .|...|.+++|+|++ ..+++++.|++|++||++..+
T Consensus 473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~ 552 (694)
T 3dm0_A 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552 (694)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999999999999998765433222 345679999999986 579999999999999999988
Q ss_pred ceeecCcccceeEEEEEeec
Q 042260 153 CSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~ 172 (174)
+...+..+...+.-+-++++
T Consensus 553 ~~~~~~~h~~~v~~v~~spd 572 (694)
T 3dm0_A 553 LRSTLAGHTGYVSTVAVSPD 572 (694)
T ss_dssp EEEEECCCSSCEEEEEECTT
T ss_pred EEEEEcCCCCCEEEEEEeCC
Confidence 88777655555555555543
No 38
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=9.3e-25 Score=179.10 Aligned_cols=164 Identities=20% Similarity=0.318 Sum_probs=136.1
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCe-EEeecCCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPV-MSYDQHTNN 80 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~ 80 (174)
.++.+|+||+.|++|++||+.+++....+..|...|.+++|+|++..++ ++.|+.|++||......... .....|...
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence 3567899999999999999999999999999999999999999887655 45789999999864311100 011358888
Q ss_pred EEEEEEeeCC--CEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 81 VMAVGFQCDG--NWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 81 v~~~~~~~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
+.+++|++++ ..+++++.|+.|++||++...+...+. |...|.+++|+|+++.|++|+.||.|++||++++++...+
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~ 599 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL 599 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe
Confidence 9999999976 589999999999999999887776664 6778999999999999999999999999999999988877
Q ss_pred CcccceeEE
Q 042260 158 GLQYGLRTF 166 (174)
Q Consensus 158 ~~~~~~~~~ 166 (174)
.....+...
T Consensus 600 ~~~~~v~~~ 608 (694)
T 3dm0_A 600 EANSVIHAL 608 (694)
T ss_dssp BCSSCEEEE
T ss_pred cCCCcEEEE
Confidence 655544443
No 39
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=4e-24 Score=159.50 Aligned_cols=148 Identities=16% Similarity=0.307 Sum_probs=121.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCC----ceeEEeecCCCCeEEEEEcC--CCceEE-EecCCcEEEEEcCCCCC-------C
Q 042260 4 PSVILATASYDKTIKFWEAKSG----RCYRTIQYPDSQVNRLEITP--NKHYLA-AAGNPHIRLFDVNSSSP-------Q 69 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~~~-~~~d~~i~i~d~~~~~~-------~ 69 (174)
++.+|++|+.|++|++||+.++ +....+..|...|.+++|+| ++.+++ ++.|+.+++||++.+.. .
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 101 (351)
T 3f3f_A 22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN 101 (351)
T ss_dssp SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence 5668999999999999999876 35666778889999999998 355555 56789999999987643 3
Q ss_pred CeEEeecCCCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCee-----------------------------------
Q 042260 70 PVMSYDQHTNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVC----------------------------------- 112 (174)
Q Consensus 70 ~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~----------------------------------- 112 (174)
....+..|...+.+++|+++ ++++++++.||.|++||+++...
T Consensus 102 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 181 (351)
T 3f3f_A 102 KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFS 181 (351)
T ss_dssp EEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSS
T ss_pred eeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCC
Confidence 35567789999999999999 99999999999999999864321
Q ss_pred -------------------------EEee-cccCcEEEEEEccCC----CEEEEeeCCCcEEEEeCCCC
Q 042260 113 -------------------------QMEY-ESRAAVNTVVLHPNQ----TELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 113 -------------------------~~~~-~~~~~v~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~ 151 (174)
...+ .+...|.+++|+|++ +.|++|+.||.|++||++.+
T Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 182 PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 1112 245689999999998 78999999999999999975
No 40
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.93 E-value=7.3e-24 Score=159.77 Aligned_cols=165 Identities=19% Similarity=0.338 Sum_probs=133.2
Q ss_pred cEEEEEeeCCCcEEEEECCC-Ccee-EEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASYDKTIKFWEAKS-GRCY-RTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+.+|++|+.|++|++||+++ ++.+ ..+..|...|.+++|+|++.++++ +.|+.+++||+++++ ......|...+
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~v 130 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ---AIQIAQHDAPV 130 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECSSCE
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC---ceeeccccCce
Confidence 58999999999999999987 5554 677788899999999999876665 568899999998764 23355789999
Q ss_pred EEEEE--eeCCCEEEEecCCCcEEEEeCCCCeeEEe--------------------------------------------
Q 042260 82 MAVGF--QCDGNWMYSGSEDGTVKIWDLRAPVCQME-------------------------------------------- 115 (174)
Q Consensus 82 ~~~~~--~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-------------------------------------------- 115 (174)
.+++| ++++++|++++.||.|++||+++......
T Consensus 131 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 210 (368)
T 3mmy_A 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 210 (368)
T ss_dssp EEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCS
T ss_pred EEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcccc
Confidence 99999 78899999999999999999875421100
Q ss_pred ----------------------------------------------ec-ccC------------cEEEEEEccCCCEEEE
Q 042260 116 ----------------------------------------------YE-SRA------------AVNTVVLHPNQTELIS 136 (174)
Q Consensus 116 ----------------------------------------------~~-~~~------------~v~~~~~~~~~~~l~s 136 (174)
+. +.. +|.+++|+|+++.|++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 290 (368)
T 3mmy_A 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLAT 290 (368)
T ss_dssp CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEE
T ss_pred ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEE
Confidence 00 011 5999999999999999
Q ss_pred eeCCCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260 137 GDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 137 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
|+.||.|++||++++++...+.......+-+-++|+
T Consensus 291 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 326 (368)
T 3mmy_A 291 VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHN 326 (368)
T ss_dssp EETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTT
T ss_pred EccCCeEEEEECCCCcEEEEecCCCCCceEEEECCC
Confidence 999999999999999998888765666666666654
No 41
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.7e-25 Score=170.37 Aligned_cols=147 Identities=12% Similarity=0.180 Sum_probs=120.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCC--ceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCC-CCCeEEeecCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSG--RCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSS-PQPVMSYDQHTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~-~~~~~~~~~~~~ 79 (174)
++.+|++|+.|++|++||+.++ +.+..+..|...|.+++|+|++.++++ +.|+.+++||+.+++ ......+..|..
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR 101 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC
Confidence 5678999999999999999988 677888889899999999998876665 568899999998875 445666778999
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe---eEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV---CQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.+.+++|++++++|++++.|+.|++||++... +...+. +...|.+++|+|+++.|++++.|+.|++||++.
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 177 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYV 177 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEe
Confidence 99999999999999999999999999998765 233443 678899999999999999999999999999963
No 42
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=3.2e-24 Score=165.23 Aligned_cols=151 Identities=14% Similarity=0.223 Sum_probs=128.5
Q ss_pred EEEEeeCCCcEEEEECCCCc----eeEEeecCCCCeEEEEEcC-CCceEEE-ecCCcEEEEEcCCCCC-----CCeEEee
Q 042260 7 ILATASYDKTIKFWEAKSGR----CYRTIQYPDSQVNRLEITP-NKHYLAA-AGNPHIRLFDVNSSSP-----QPVMSYD 75 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~~~~-~~d~~i~i~d~~~~~~-----~~~~~~~ 75 (174)
++++++.||.|++||+.... .+..+..|...|.+++|+| ++.++++ +.|+.|++||+.+++. .+...+.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 128 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec
Confidence 45568999999999986542 3445667888999999999 7776665 4688999999987643 4566778
Q ss_pred cCCCCEEEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEee---cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 76 QHTNNVMAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEY---ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.|...|.+++|++++ +++++++.|+.|++||+++......+ .+...|.+++|+|+++.|++++.|+.|++||++++
T Consensus 129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 208 (402)
T 2aq5_A 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208 (402)
T ss_dssp CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence 899999999999998 69999999999999999998887776 36778999999999999999999999999999998
Q ss_pred cceeec
Q 042260 152 SCSCEL 157 (174)
Q Consensus 152 ~~~~~~ 157 (174)
++...+
T Consensus 209 ~~~~~~ 214 (402)
T 2aq5_A 209 TVVAEK 214 (402)
T ss_dssp EEEEEE
T ss_pred ceeeee
Confidence 887776
No 43
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.2e-24 Score=164.05 Aligned_cols=143 Identities=16% Similarity=0.239 Sum_probs=111.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCC---CCeEEEEEcCCCceEEE-------------ecCCcEEEEEcCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPD---SQVNRLEITPNKHYLAA-------------AGNPHIRLFDVNSSS 67 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~-------------~~d~~i~i~d~~~~~ 67 (174)
++.+|++||.|++|||||+++|++++++..+. ..+..++|+|++.++++ +.|+.+++||..+++
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 45689999999999999999999999997643 35677889999886632 347789999998764
Q ss_pred CCCeEE---eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCc-EEEEEEccCCCEEEEeeCCCc
Q 042260 68 PQPVMS---YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAA-VNTVVLHPNQTELISGDQNGN 142 (174)
Q Consensus 68 ~~~~~~---~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~l~s~~~d~~ 142 (174)
...... ..+|...+.+..++ +.++++|+.|++|+|||+++.++..++. +... +..++|+|+++.|++|+.|++
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 322211 13566665544443 8899999999999999999999888885 4444 446899999999999999999
Q ss_pred EEEEeC
Q 042260 143 IRVWDL 148 (174)
Q Consensus 143 i~iwd~ 148 (174)
||+||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999995
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.93 E-value=1.2e-23 Score=157.10 Aligned_cols=163 Identities=15% Similarity=0.333 Sum_probs=134.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCcee---EEee--cCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeec
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCY---RTIQ--YPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
+++.+|++++ |++|++||+.+++.. ..+. .+...|.+++|+|++.++++ +.++.+++||++.++......+..
T Consensus 61 ~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred cCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence 3566888888 999999999877643 3333 57788999999999876655 568899999998876555666778
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
|...+.+++|+++++++++++.||.|++||+++......+. +...|.+++|+|+++.|++++.|+.|++||++.++...
T Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 219 (337)
T 1gxr_A 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219 (337)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe
Confidence 89999999999999999999999999999999988777665 57789999999999999999999999999999988877
Q ss_pred ecCcccceeEE
Q 042260 156 ELGLQYGLRTF 166 (174)
Q Consensus 156 ~~~~~~~~~~~ 166 (174)
.+.....+...
T Consensus 220 ~~~~~~~v~~~ 230 (337)
T 1gxr_A 220 QHDFTSQIFSL 230 (337)
T ss_dssp EEECSSCEEEE
T ss_pred eecCCCceEEE
Confidence 76655544443
No 45
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.93 E-value=4.5e-25 Score=172.04 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=118.3
Q ss_pred cEEEEEeeCCCcEEEEECCCCcee--EEeecCCCCeEEEEEcC-CCceE-EEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCY--RTIQYPDSQVNRLEITP-NKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
+.+||+|+.||+|+|||+.+++.. ..+..|...|.+++|+| ++.+| +++.|+.|++||++.+..........+...
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 211 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 211 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCcc
Confidence 458999999999999999877654 34456888999999998 45555 456789999999976532222222233456
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCCCcceee
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
+.+++|++++++|++|+.||.|++||++.........+...|.+++|+|+++ .+++|+.|+.|++||++..+....
T Consensus 212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~ 288 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS 288 (435)
T ss_dssp CCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred EEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence 7889999999999999999999999998654433335678899999999876 677899999999999998765433
No 46
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-24 Score=163.41 Aligned_cols=167 Identities=11% Similarity=0.109 Sum_probs=129.6
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC-------CCCCeEEe
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS-------SPQPVMSY 74 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-------~~~~~~~~ 74 (174)
..++.+|++|+.||+|++||+++++.+..+. ...|..+.++|. +++++.|+.+++|+.... ....+...
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 3467889999999999999999999888776 345777788887 666778899999976521 11112222
Q ss_pred -ecCCCCEEEEEEee--CCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 75 -DQHTNNVMAVGFQC--DGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 75 -~~~~~~v~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
..|...+.+++|+| +++++++++.||.|++||+++..+.... .+...+.+++|+|++..|++|+.||.|++||++
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 25668899999999 9999999999999999999988775544 334579999999999999999999999999999
Q ss_pred CCcce-eecCc-ccceeEEEEEeec
Q 042260 150 ANSCS-CELGL-QYGLRTFLFYHQD 172 (174)
Q Consensus 150 ~~~~~-~~~~~-~~~~~~~~~~~~~ 172 (174)
++++. ..+.. +.....-+-++|+
T Consensus 201 ~~~~~~~~~~~~h~~~v~~l~fs~~ 225 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAKIKEVKFADN 225 (343)
T ss_dssp CTTSCCEECCCCTTSCEEEEEECTT
T ss_pred CCCCCccEEeccCCCCEEEEEEeCC
Confidence 98877 66655 3444555555543
No 47
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.4e-24 Score=160.49 Aligned_cols=170 Identities=17% Similarity=0.250 Sum_probs=134.8
Q ss_pred CCcEEEEEeeCCCcEEEEECC--CCceeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecC
Q 042260 3 QPSVILATASYDKTIKFWEAK--SGRCYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
+++.+|++|+.|++|++||+. +++.+..+..|...|.+++|+++ +.+++ ++.|+.|++||+++++......+..|
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 100 (379)
T 3jrp_A 21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH 100 (379)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCC
Confidence 356689999999999999987 56677788889899999999865 56555 55789999999988754456667789
Q ss_pred CCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCee---EEeecccCcEEEEEEcc-------------CCCEEEEeeC
Q 042260 78 TNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVC---QMEYESRAAVNTVVLHP-------------NQTELISGDQ 139 (174)
Q Consensus 78 ~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~~~-------------~~~~l~s~~~ 139 (174)
...+.+++|+++ ++++++++.|+.|++||++.... .....+...|.+++|+| ++..|++++.
T Consensus 101 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (379)
T 3jrp_A 101 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET
T ss_pred CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence 999999999999 99999999999999999987632 22235678899999999 6899999999
Q ss_pred CCcEEEEeCCCCcce----eecCcccceeEEEEEeec
Q 042260 140 NGNIRVWDLTANSCS----CELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 140 d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~ 172 (174)
|+.|++||++.+... ..+..+.....-+-++|+
T Consensus 181 dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 217 (379)
T 3jrp_A 181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 217 (379)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence 999999999976543 333333333444444543
No 48
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.93 E-value=1.9e-23 Score=169.38 Aligned_cols=151 Identities=18% Similarity=0.278 Sum_probs=125.6
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEEecCC-----cEEEEEcCCCCCCCeEEee
Q 042260 3 QPSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAAAGNP-----HIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~~~~ 75 (174)
+++.+||||+.|++|+|||+.+++ ....+..|...|.+++|+|++..+++++++ .+++||. ++ ....+.
T Consensus 69 pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~--~~~~l~ 144 (611)
T 1nr0_A 69 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GT--SNGNLT 144 (611)
T ss_dssp TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CC--BCBCCC
T ss_pred CCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CC--Ccceec
Confidence 467799999999999999987654 345677788899999999999888765432 4666663 32 234467
Q ss_pred cCCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 76 QHTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
+|...|.+++|+|++. .|++|+.|+.|++||.+..++..++. |...|.+++|+|+++.|++|+.|++|++||+.++++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 224 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence 8999999999999986 69999999999999998877776664 667899999999999999999999999999998887
Q ss_pred eeec
Q 042260 154 SCEL 157 (174)
Q Consensus 154 ~~~~ 157 (174)
...+
T Consensus 225 ~~~~ 228 (611)
T 1nr0_A 225 TGVF 228 (611)
T ss_dssp EEEC
T ss_pred eeee
Confidence 7655
No 49
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.93 E-value=6.6e-24 Score=162.19 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=125.9
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.+|++|+.|++|++||+.+++....+. .|...|.+++|+| ++.+++ ++.|+.+++||++............|...+
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 166 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY 166 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCE
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCe
Confidence 689999999999999999988877765 4788999999999 555554 557899999999854222222223345789
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCC----Ccceee
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTA----NSCSCE 156 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~----~~~~~~ 156 (174)
.+++|++++++|++|+.|+.|++||++.........+...|.+++|+|+++ .+++++.|+.|++||+++ ..+...
T Consensus 167 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 246 (383)
T 3ei3_B 167 CCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE 246 (383)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE
Confidence 999999999999999999999999996544333335678999999999998 899999999999999998 555555
Q ss_pred cCcccceeE
Q 042260 157 LGLQYGLRT 165 (174)
Q Consensus 157 ~~~~~~~~~ 165 (174)
+.+...+..
T Consensus 247 ~~~~~~v~~ 255 (383)
T 3ei3_B 247 MPHEKPVNA 255 (383)
T ss_dssp EECSSCEEE
T ss_pred ecCCCceEE
Confidence 544443333
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.93 E-value=5e-23 Score=153.64 Aligned_cols=149 Identities=17% Similarity=0.315 Sum_probs=130.7
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.+|++++.|++|++||+++++ ....+..+...+.+++|+|++.++++ +.++.+++||++++ .....+..|...
T Consensus 108 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~~ 185 (337)
T 1gxr_A 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDG 185 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSC
T ss_pred CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--ceeeeeecccCc
Confidence 45689999999999999999887 55667778888999999998876655 56889999999876 445567789999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
+.+++|+++++++++++.|+.|++||+++......+.+..++.+++|+|+++.+++++.|+.|++||++.+...
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~ 259 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY 259 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Confidence 99999999999999999999999999999988888888889999999999999999999999999999987654
No 51
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.93 E-value=1.2e-23 Score=168.13 Aligned_cols=165 Identities=23% Similarity=0.389 Sum_probs=133.2
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++.+|++++.|++|++||. +++.+..+..|...|.+++|+|++.++++ +.|+.+++||... .....+..|...+
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---~~~~~~~~~~~~v 470 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSV 470 (577)
T ss_dssp TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS---CEEEEEECCSSCE
T ss_pred CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---CEEEEEcCCCCCE
Confidence 35668999999999999995 57888888889999999999999887765 5688999999743 3455677899999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
.+++|+|++++|++++.|+.|++||...........+...|.+++|+|+++.|++++.||.|++||. ++++...+..+.
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~ 549 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 549 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCC
Confidence 9999999999999999999999999765433333356788999999999999999999999999996 566666665444
Q ss_pred ceeEEEEEeec
Q 042260 162 GLRTFLFYHQD 172 (174)
Q Consensus 162 ~~~~~~~~~~~ 172 (174)
..+.-+-++||
T Consensus 550 ~~v~~~~fs~d 560 (577)
T 2ymu_A 550 SSVWGVAFSPD 560 (577)
T ss_dssp SCEEEEEECTT
T ss_pred CCEEEEEEcCC
Confidence 44444444443
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.93 E-value=3.5e-24 Score=165.10 Aligned_cols=165 Identities=17% Similarity=0.361 Sum_probs=130.7
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeec---CCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQ---HTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~---~~~ 79 (174)
++.+|++|+.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.+++||+++++ ....+.. +..
T Consensus 150 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~ 227 (420)
T 3vl1_A 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT--TIHTFNRKENPHD 227 (420)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--EEEEECBTTBTTC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc--eeEEeecCCCCCC
Confidence 4668999999999999999999999999999999999999999876655 568899999998763 3334432 344
Q ss_pred CEEEEEE---------------------eeCCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCC-EEE
Q 042260 80 NVMAVGF---------------------QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQT-ELI 135 (174)
Q Consensus 80 ~v~~~~~---------------------~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~ 135 (174)
.+.++++ +++++++++|+.||.|++||+++......+. +...|.+++|+|+++ .|+
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 228 GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp CEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE
T ss_pred CccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE
Confidence 5555554 6788999999999999999999877665553 467899999999998 999
Q ss_pred EeeCCCcEEEEeCCCCcc-eeecCc-ccceeEEEEEe
Q 042260 136 SGDQNGNIRVWDLTANSC-SCELGL-QYGLRTFLFYH 170 (174)
Q Consensus 136 s~~~d~~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~ 170 (174)
+|+.||.|++||++++.+ ...+.. .......++++
T Consensus 308 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA 344 (420)
T ss_dssp EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE
T ss_pred EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC
Confidence 999999999999998765 444432 34444444443
No 53
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=5.6e-24 Score=158.71 Aligned_cols=150 Identities=23% Similarity=0.363 Sum_probs=122.7
Q ss_pred cEEEEEeeCCCcEEEEECCCC---------ceeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCC---
Q 042260 5 SVILATASYDKTIKFWEAKSG---------RCYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQ--- 69 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~--- 69 (174)
+.+|++|+.|++|++||++++ +.+..+..|...|.+++|+|+ +.+++ ++.|+.+++||+++++..
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence 678999999999999999887 457777788889999999998 77655 457889999998754321
Q ss_pred -------------------------------------------------------CeEEeecCCCCEEEEEEeeCC----
Q 042260 70 -------------------------------------------------------PVMSYDQHTNNVMAVGFQCDG---- 90 (174)
Q Consensus 70 -------------------------------------------------------~~~~~~~~~~~v~~~~~~~~~---- 90 (174)
....+..|...+.+++|++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 123345688899999999998
Q ss_pred CEEEEecCCCcEEEEeCCCC----------------------------------------------eeEEee-cccCcEE
Q 042260 91 NWMYSGSEDGTVKIWDLRAP----------------------------------------------VCQMEY-ESRAAVN 123 (174)
Q Consensus 91 ~~l~t~~~dg~v~iwd~~~~----------------------------------------------~~~~~~-~~~~~v~ 123 (174)
++|++|+.||.|++||++.. .....+ .+...|.
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW 310 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence 89999999999999998763 223333 3567899
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 124 TVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 124 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
+++|+|+++.|++++.||.|++||++.+...
T Consensus 311 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 311 SVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp EEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred EEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 9999999999999999999999999987543
No 54
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.92 E-value=7.9e-24 Score=169.25 Aligned_cols=140 Identities=26% Similarity=0.488 Sum_probs=121.0
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.+|++++.|++|++||. +++.+..+..|...|.+++|+|++.+++++ .|+.|++||.. + .....+.+|...|.
T Consensus 437 d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~--~~~~~~~~h~~~v~ 512 (577)
T 2ymu_A 437 DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G--QLLQTLTGHSSSVR 512 (577)
T ss_dssp TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S--CEEEEEECCSSCEE
T ss_pred CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C--CEEEEEeCCCCCEE
Confidence 4668999999999999995 567888888899999999999999887764 67889999963 3 44566788999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
+++|+|++++|++++.|+.|++||...........|..+|.+++|+|+++.|++++.|++|++||
T Consensus 513 ~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 513 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999999975544333335778999999999999999999999999998
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=9.7e-24 Score=159.83 Aligned_cols=147 Identities=12% Similarity=0.202 Sum_probs=124.8
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+++.+|++|+.|++|++||+.+++ .+..+..|...|.+++|+|++.++++ +.|+.+++||+++++.........|..
T Consensus 18 ~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 97 (372)
T 1k8k_C 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 97 (372)
T ss_dssp TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC
Confidence 356789999999999999999887 78888889899999999998887665 568899999997765444444567889
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee---EEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC---QMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.+.+++|+++++++++++.|+.|++||++.... ...+ .+...|.+++|+|+++.|++++.|+.|++||++
T Consensus 98 ~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 172 (372)
T 1k8k_C 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 172 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcc
Confidence 999999999999999999999999999987541 2222 356789999999999999999999999999964
No 56
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.92 E-value=2.2e-23 Score=156.12 Aligned_cols=144 Identities=19% Similarity=0.403 Sum_probs=119.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
..++++++.|++|++||+++++.+..+..|...|.+++|+|++.++++ +.|+.+++||+++. ..+..+. +...+..
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~-~~~~v~~ 261 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHLYTLD-GGDIINA 261 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEEEEEE-CSSCEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--ceeeeec-CCceEEe
Confidence 457899999999999999999999999989999999999999887765 57889999999876 3344444 4567999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee----------cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY----------ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
+.|++++.+ ++++.|+.|++||++.......+ .+...|.+++|+|+++.|++|+.||.|++||+++++
T Consensus 262 ~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 262 LCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999987765 55667999999999987665443 245679999999999999999999999999999875
No 57
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=1.3e-23 Score=161.90 Aligned_cols=148 Identities=20% Similarity=0.326 Sum_probs=126.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCC-------ceeEEeecCCCCeEEEEEcCCC-ceE-EEecCCcEEEEEcCCCCCCCeEEe
Q 042260 4 PSVILATASYDKTIKFWEAKSG-------RCYRTIQYPDSQVNRLEITPNK-HYL-AAAGNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~~-~~~~d~~i~i~d~~~~~~~~~~~~ 74 (174)
++.+|++|+.|++|++||+.++ +.+..+..|...|.+++|+|++ .++ +++.|+.|++||++++ .....+
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~ 170 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--AAVLTL 170 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--EEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--CccEEE
Confidence 4668999999999999999887 5677888899999999999987 455 4567899999999876 445556
Q ss_pred --ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccC-cEEEEEEccCCCEEEEe---eCCCcEEEE
Q 042260 75 --DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRA-AVNTVVLHPNQTELISG---DQNGNIRVW 146 (174)
Q Consensus 75 --~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~-~v~~~~~~~~~~~l~s~---~~d~~i~iw 146 (174)
..|...+.+++|++++++|++++.|+.|++||+++......+ .+.. .+.+++|+|++..|++| +.|+.|++|
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iw 250 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEE
T ss_pred ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEE
Confidence 679999999999999999999999999999999998877766 2333 48999999999999998 789999999
Q ss_pred eCCCCcc
Q 042260 147 DLTANSC 153 (174)
Q Consensus 147 d~~~~~~ 153 (174)
|++....
T Consensus 251 d~~~~~~ 257 (402)
T 2aq5_A 251 DTKHLEE 257 (402)
T ss_dssp ETTBCSS
T ss_pred cCccccC
Confidence 9998665
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=2.2e-23 Score=162.95 Aligned_cols=164 Identities=18% Similarity=0.294 Sum_probs=135.2
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
+.+|++|+.|++|++||+++++.+..+..|...|.+++|++++.+++++.|+.+++||++++ .....+..|...+.++
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l 209 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVFEGHNSTVRCL 209 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC--cEEEEECCCCCccEEE
Confidence 45799999999999999999999999999999999999999886677778999999999876 4566677899999999
Q ss_pred EEee--CCCEEEEecCCCcEEEEeCCCCeeE-----------------------Ee-ecccCcEEEEEEccCCCEEEEee
Q 042260 85 GFQC--DGNWMYSGSEDGTVKIWDLRAPVCQ-----------------------ME-YESRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 85 ~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~-----------------------~~-~~~~~~v~~~~~~~~~~~l~s~~ 138 (174)
++.+ +++++++|+.|+.|++||++..... .. ..+...+.++ +++++.+++|+
T Consensus 210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~ 287 (464)
T 3v7d_B 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS 287 (464)
T ss_dssp EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE
T ss_pred EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe
Confidence 9984 7789999999999999999865421 11 2344556665 57889999999
Q ss_pred CCCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260 139 QNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
.|+.|++||++++++...+..+.....-+.++++
T Consensus 288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence 9999999999999998887655555555555543
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=1.8e-23 Score=159.85 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=127.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec---C---CCCeEEEEEcCCCceEEEe-cC---CcEEEEEcCCCCCCCeEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY---P---DSQVNRLEITPNKHYLAAA-GN---PHIRLFDVNSSSPQPVMS 73 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~-~d---~~i~i~d~~~~~~~~~~~ 73 (174)
++ ++++++.|+.|++||+++++.+..+.. | ...+.+++|+|++.+++++ .| +.|++||++++ ..+..
T Consensus 197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~ 273 (397)
T 1sq9_A 197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG--ERIGS 273 (397)
T ss_dssp TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC--CEEEE
T ss_pred Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC--cccce
Confidence 45 899999999999999999999999988 7 8899999999998877655 56 78999999876 44556
Q ss_pred eec-------------CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-------c---------------
Q 042260 74 YDQ-------------HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-------S--------------- 118 (174)
Q Consensus 74 ~~~-------------~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-------~--------------- 118 (174)
+.. |...+.+++|++++++|++++.||.|++||+++......+. +
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 274 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred eccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccccc
Confidence 666 89999999999999999999999999999999988777765 3
Q ss_pred cCcEEEEEEccCC----------CEEEEeeCCCcEEEEeCCCC
Q 042260 119 RAAVNTVVLHPNQ----------TELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 119 ~~~v~~~~~~~~~----------~~l~s~~~d~~i~iwd~~~~ 151 (174)
..+|.+++|+|++ +.|++++.||.|++||++++
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 6789999999998 79999999999999999875
No 60
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.7e-23 Score=157.37 Aligned_cols=148 Identities=20% Similarity=0.366 Sum_probs=126.2
Q ss_pred cEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+.+|++|+.|++|++||+++++ .+..+..+...|.+++|+|+ +.+++ ++.|+.+++||++.........+..|..
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 148 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 148 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence 6789999999999999999987 66777778889999999998 66555 5578899999998876556666778999
Q ss_pred CEEEEEEee-------------CCCEEEEecCCCcEEEEeCCCCe----eEEee-cccCcEEEEEEccC---CCEEEEee
Q 042260 80 NVMAVGFQC-------------DGNWMYSGSEDGTVKIWDLRAPV----CQMEY-ESRAAVNTVVLHPN---QTELISGD 138 (174)
Q Consensus 80 ~v~~~~~~~-------------~~~~l~t~~~dg~v~iwd~~~~~----~~~~~-~~~~~v~~~~~~~~---~~~l~s~~ 138 (174)
.+.+++|+| +++++++++.|+.|++||++... ....+ .+...|.+++|+|+ ++.|++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 999999999 69999999999999999997643 22333 35678999999999 89999999
Q ss_pred CCCcEEEEeCCCCc
Q 042260 139 QNGNIRVWDLTANS 152 (174)
Q Consensus 139 ~d~~i~iwd~~~~~ 152 (174)
.||.|++||++.+.
T Consensus 229 ~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQ 242 (379)
T ss_dssp TTSCEEEEEESSTT
T ss_pred CCCEEEEEeCCCCC
Confidence 99999999999864
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=1e-23 Score=161.21 Aligned_cols=153 Identities=14% Similarity=0.302 Sum_probs=129.4
Q ss_pred CCcEE-EEEeeCCCcEEEEECCC------CceeE-----Eee-------cCCCCeEEEEEcCCCceEEE-ecCCcEEEEE
Q 042260 3 QPSVI-LATASYDKTIKFWEAKS------GRCYR-----TIQ-------YPDSQVNRLEITPNKHYLAA-AGNPHIRLFD 62 (174)
Q Consensus 3 ~~~~~-l~s~s~D~~v~vwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d 62 (174)
+++.. |++++.|+.|++||+++ ++.+. .+. .+...+.+++|+|++ ++++ +.|+.+++||
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE 213 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence 35667 99999999999999998 76665 663 367789999999998 6655 4678999999
Q ss_pred cCCCCCCCeEEeec---C---CCCEEEEEEeeCCCEEEEecCC---CcEEEEeCCCCeeEEeec--------------cc
Q 042260 63 VNSSSPQPVMSYDQ---H---TNNVMAVGFQCDGNWMYSGSED---GTVKIWDLRAPVCQMEYE--------------SR 119 (174)
Q Consensus 63 ~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~--------------~~ 119 (174)
+++. ..+..+.. | ...+.+++|++++++|++++.| +.|++||+++......+. +.
T Consensus 214 ~~~~--~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (397)
T 1sq9_A 214 LSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291 (397)
T ss_dssp TTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred CCCC--ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence 9876 45566667 8 8999999999999999999999 999999999887776664 57
Q ss_pred CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 120 AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 120 ~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
..|.+++|+|+++.|++++.|+.|++||+++.++...+.
T Consensus 292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 889999999999999999999999999999998887776
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.92 E-value=4e-23 Score=156.43 Aligned_cols=169 Identities=14% Similarity=0.115 Sum_probs=135.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEe--ecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCC--CeEEeecCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTI--QYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQ--PVMSYDQHT 78 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~--~~~~~~~~~ 78 (174)
++.+|++++.|++|++||+++++..... ..+...|.++.|+|++.++++ +.++.+++||++..... .......|.
T Consensus 63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~ 142 (372)
T 1k8k_C 63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 142 (372)
T ss_dssp TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC
Confidence 4668999999999999999888765544 457778999999999877665 46889999999876421 122235678
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCC------------------CCeeEEee-cccCcEEEEEEccCCCEEEEeeC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLR------------------APVCQMEY-ESRAAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~------------------~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~ 139 (174)
..+.+++|+++++++++++.|+.|++||++ .......+ .+...|.+++|+|+++.|++++.
T Consensus 143 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 222 (372)
T 1k8k_C 143 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 222 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC
Confidence 999999999999999999999999999964 44555555 45678999999999999999999
Q ss_pred CCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260 140 NGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 140 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
|+.|++||++++++...+........-+.++++
T Consensus 223 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 255 (372)
T 1k8k_C 223 DSTVCLADADKKMAVATLASETLPLLAVTFITE 255 (372)
T ss_dssp TTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET
T ss_pred CCEEEEEECCCCceeEEEccCCCCeEEEEEecC
Confidence 999999999999888887655544444555543
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.92 E-value=9.8e-24 Score=163.66 Aligned_cols=149 Identities=19% Similarity=0.397 Sum_probs=119.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc-----------eeEEeecCC------------CCeEEEEEcCCC---ceEEEecCCc
Q 042260 4 PSVILATASYDKTIKFWEAKSGR-----------CYRTIQYPD------------SQVNRLEITPNK---HYLAAAGNPH 57 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~---~~~~~~~d~~ 57 (174)
++.+|++|+.||.|++||+.+++ ....+..|. ..|.+++|+|++ .+++++.|+.
T Consensus 39 ~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~ 118 (447)
T 3dw8_B 39 SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT 118 (447)
T ss_dssp SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSC
T ss_pred CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCe
Confidence 56789999999999999998876 467777787 789999999985 4566678999
Q ss_pred EEEEEcCCCCCC-------------------------------------CeEE-eecCCCCEEEEEEeeCCCEEEEecCC
Q 042260 58 IRLFDVNSSSPQ-------------------------------------PVMS-YDQHTNNVMAVGFQCDGNWMYSGSED 99 (174)
Q Consensus 58 i~i~d~~~~~~~-------------------------------------~~~~-~~~~~~~v~~~~~~~~~~~l~t~~~d 99 (174)
|++||+..+... +... ...|...|.+++|++++++|++| .|
T Consensus 119 i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 197 (447)
T 3dw8_B 119 IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DD 197 (447)
T ss_dssp EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CS
T ss_pred EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CC
Confidence 999998653210 0011 25689999999999999999999 79
Q ss_pred CcEEEEeCCC-CeeEEe-------e-cccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcc
Q 042260 100 GTVKIWDLRA-PVCQME-------Y-ESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 100 g~v~iwd~~~-~~~~~~-------~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
+.|++||++. ..+... + .+...|.+++|+|++ +.|++|+.||.|++||++++..
T Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 198 LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 9999999984 333332 1 456789999999998 8999999999999999998876
No 64
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=5.8e-23 Score=156.47 Aligned_cols=148 Identities=16% Similarity=0.252 Sum_probs=118.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-----------------------------------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH----------------------------------- 48 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------------------------- 48 (174)
++.++++|+.|++|++||.++++.+..+.. ...|.++.++++..
T Consensus 70 ~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~ 148 (355)
T 3vu4_A 70 TNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNG 148 (355)
T ss_dssp SSEEEEECSSTTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETT
T ss_pred CCEEEEEECCccEEEEEECCCCcEEEEEEC-CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEcc
Confidence 344557889999999999999999888874 45788888876421
Q ss_pred eEE---EecCCcEEEEEcCCCCC-------------CC-eEEeecCCCCEEEEEEeeCCCEEEEecCCCc-EEEEeCCCC
Q 042260 49 YLA---AAGNPHIRLFDVNSSSP-------------QP-VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGT-VKIWDLRAP 110 (174)
Q Consensus 49 ~~~---~~~d~~i~i~d~~~~~~-------------~~-~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~-v~iwd~~~~ 110 (174)
.++ ++.++.|++||+++++. .+ ...+.+|...|.+++|+|++++|++|+.|++ |++||+++.
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 111 13456778888765420 11 5567889999999999999999999999998 999999998
Q ss_pred eeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 111 VCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 111 ~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
.+...+. +...|.+++|+|+++.|++++.|++|++||++.+.
T Consensus 229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 229 VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 8887776 77899999999999999999999999999998653
No 65
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.92 E-value=6.8e-23 Score=153.42 Aligned_cols=160 Identities=21% Similarity=0.323 Sum_probs=125.8
Q ss_pred cEEEEEeeCCCcEEEEECCCCc-----eeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCC----------
Q 042260 5 SVILATASYDKTIKFWEAKSGR-----CYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSP---------- 68 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~---------- 68 (174)
+.+|+|||.|++|++||+.+++ +...+..|...|.++.|+|++.++++ +.|+.+++|+......
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~ 130 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc
Confidence 5689999999999999987654 45667778889999999999887665 4677788887643210
Q ss_pred -------------------------------CCeEEeecCCCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCeeEEe
Q 042260 69 -------------------------------QPVMSYDQHTNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPVCQME 115 (174)
Q Consensus 69 -------------------------------~~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~ 115 (174)
........|...+..++|.++ ..++++++.|+.|++||++.......
T Consensus 131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~ 210 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence 001112346677888888765 45789999999999999999887766
Q ss_pred ec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccccee
Q 042260 116 YE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLR 164 (174)
Q Consensus 116 ~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 164 (174)
+. +..+|.+++|+|+++.|++|+.|+.|++||++..++...+.....+.
T Consensus 211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~ 260 (340)
T 4aow_A 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIIN 260 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEE
Confidence 64 57789999999999999999999999999999998887776554443
No 66
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.7e-24 Score=178.49 Aligned_cols=154 Identities=13% Similarity=0.242 Sum_probs=124.9
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCcee----EEee-------cCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCC--
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCY----RTIQ-------YPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSP-- 68 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~----~~~~-------~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~-- 68 (174)
+++.+|+||+.|++||+||+.+++.. .... .|...|.+++|+|++.+++++ .|+.|++||+.+++.
T Consensus 445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~ 524 (902)
T 2oaj_A 445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS 524 (902)
T ss_dssp SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence 35789999999999999999887431 1111 567789999999999887765 688999999976521
Q ss_pred -----------------------------------------CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeC
Q 042260 69 -----------------------------------------QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDL 107 (174)
Q Consensus 69 -----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~ 107 (174)
.++..+.+|...|.+++|+|+| +||+|+.|++|++||+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 1245677899999999999999 9999999999999999
Q ss_pred CCCeeEEe-----e--cccCcEEEEEEc-----cCC---CEEEEeeCCCcEEEEeC---CCCcceeec
Q 042260 108 RAPVCQME-----Y--ESRAAVNTVVLH-----PNQ---TELISGDQNGNIRVWDL---TANSCSCEL 157 (174)
Q Consensus 108 ~~~~~~~~-----~--~~~~~v~~~~~~-----~~~---~~l~s~~~d~~i~iwd~---~~~~~~~~~ 157 (174)
+.+..+.. + .|...|.+++|+ |++ ..|++|+.|++|++||+ .++++..++
T Consensus 604 ~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~ 671 (902)
T 2oaj_A 604 RGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQL 671 (902)
T ss_dssp TTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEe
Confidence 98876531 2 356679999999 885 78999999999999999 677766554
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=3.3e-24 Score=160.82 Aligned_cols=146 Identities=23% Similarity=0.329 Sum_probs=118.1
Q ss_pred cEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCC-CCeEEeecCC
Q 042260 5 SVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSP-QPVMSYDQHT 78 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~-~~~~~~~~~~ 78 (174)
+.+|+||+.|++|++||+++++ ....+..|...|.+++|+|+ +.+++ ++.|+.+++||++.... .....+..|.
T Consensus 71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~ 150 (316)
T 3bg1_A 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT 150 (316)
T ss_dssp SSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS
T ss_pred CCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc
Confidence 5689999999999999999874 56667778889999999997 55555 45788999999976531 1123345788
Q ss_pred CCEEEEEEeeC-----------------CCEEEEecCCCcEEEEeCCCC---eeEEee-cccCcEEEEEEccCC----CE
Q 042260 79 NNVMAVGFQCD-----------------GNWMYSGSEDGTVKIWDLRAP---VCQMEY-ESRAAVNTVVLHPNQ----TE 133 (174)
Q Consensus 79 ~~v~~~~~~~~-----------------~~~l~t~~~dg~v~iwd~~~~---~~~~~~-~~~~~v~~~~~~~~~----~~ 133 (174)
..+.+++|+|+ +++|++|+.|+.|++||++.. .....+ .|...|.+++|+|++ ..
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST 230 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence 88999999886 478999999999999999754 334444 466789999999986 78
Q ss_pred EEEeeCCCcEEEEeCCC
Q 042260 134 LISGDQNGNIRVWDLTA 150 (174)
Q Consensus 134 l~s~~~d~~i~iwd~~~ 150 (174)
|++++.|++|++||++.
T Consensus 231 las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 231 IASCSQDGRVFIWTCDD 247 (316)
T ss_dssp EEEEETTCEEEEEECSS
T ss_pred EEEEcCCCeEEEEEccC
Confidence 99999999999999986
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.92 E-value=7.2e-23 Score=156.40 Aligned_cols=150 Identities=21% Similarity=0.301 Sum_probs=127.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecC---CCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP---DSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
++.+|++++.|++|++||+++ +.+..+..+ ...|.+++|+|++.++++ +.|+.+++||++. .....+..|..
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~h~~ 205 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG---HEIFKEKLHKA 205 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS---CEEEEEECSSS
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC---CEEEEeccCCC
Confidence 457899999999999999985 555555443 367999999999887765 4688999999942 45666778999
Q ss_pred CEEEEEEeeCCC-EEEEecCCCcEEEEeCCC----CeeEEeecccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 80 NVMAVGFQCDGN-WMYSGSEDGTVKIWDLRA----PVCQMEYESRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 80 ~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
.+.+++|+++++ ++++++.|+.|++||+++ ..+...+.+...|.+++|+| ++..|++++.|+.|++||+++..+
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 999999999999 999999999999999987 55666677888999999999 999999999999999999998776
Q ss_pred eeec
Q 042260 154 SCEL 157 (174)
Q Consensus 154 ~~~~ 157 (174)
...+
T Consensus 286 ~~~~ 289 (383)
T 3ei3_B 286 PDQI 289 (383)
T ss_dssp CSEE
T ss_pred cccc
Confidence 5443
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=2.3e-22 Score=157.15 Aligned_cols=161 Identities=25% Similarity=0.444 Sum_probs=133.5
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC--CCceE-EEecCCcEEEEEcCCCCCCC-------------
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP--NKHYL-AAAGNPHIRLFDVNSSSPQP------------- 70 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~-~~~~d~~i~i~d~~~~~~~~------------- 70 (174)
.|++|+.|++|++||+++++.+..+..|...|.++++++ ++.++ +++.|+.+++||++......
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 799999999999999999999999998999999999984 54554 45678999999998764321
Q ss_pred --------eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCC
Q 042260 71 --------VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNG 141 (174)
Q Consensus 71 --------~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~ 141 (174)
...+..|...+.++ +++++++++|+.|+.|++||+++..+...+. +...|.+++|+|+++.+++|+.||
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 33456777777776 5679999999999999999999988877764 578899999999999999999999
Q ss_pred cEEEEeCCCCcceeecCcccceeEEEEE
Q 042260 142 NIRVWDLTANSCSCELGLQYGLRTFLFY 169 (174)
Q Consensus 142 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 169 (174)
.|++||++++++...+..+......+.+
T Consensus 333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 360 (464)
T 3v7d_B 333 TIRIWDLENGELMYTLQGHTALVGLLRL 360 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred cEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence 9999999999988887655444444333
No 70
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-23 Score=162.94 Aligned_cols=152 Identities=16% Similarity=0.231 Sum_probs=127.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEee-cCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYD-QHTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~-~~~~ 79 (174)
++.+|++|+.|++|++||+++++.+..+.. |...|.+++|+|++.++++ +.|+.|++||++.+ .++..+. .|..
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~ 258 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--VLIRSWSFGDHA 258 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--EEEEEEBCTTCE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--cEEEEEecCCCC
Confidence 478999999999999999999999999987 6789999999999887665 57888999999875 3444443 5677
Q ss_pred CEEEEEEe----eCCCEEEEecCCCcEEEEeCCCCeeEEeec---------------------------ccCcEEEEEEc
Q 042260 80 NVMAVGFQ----CDGNWMYSGSEDGTVKIWDLRAPVCQMEYE---------------------------SRAAVNTVVLH 128 (174)
Q Consensus 80 ~v~~~~~~----~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~---------------------------~~~~v~~~~~~ 128 (174)
.+.++++. ++++++++|+.||.|++||+++..+...+. +...|.+++|+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 89999665 467799999999999999999887665543 34558889999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 129 PNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 129 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
+++.|++|+.|+.|++||++++++...+.
T Consensus 339 -~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 339 -NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp -TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred -CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 67899999999999999999988876654
No 71
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6e-23 Score=155.28 Aligned_cols=147 Identities=12% Similarity=0.145 Sum_probs=118.4
Q ss_pred EEEeeCCCcEEEEECC---------CCceeEEee-cCCCCeEEEEEcC--CCceEE-EecCCcEEEEEcCCCCCCCeEEe
Q 042260 8 LATASYDKTIKFWEAK---------SGRCYRTIQ-YPDSQVNRLEITP--NKHYLA-AAGNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~ 74 (174)
+++++.|++|++|+.. +++.+.... .+...|.+++|+| ++.+++ ++.|+.+++||+++++. ....
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~ 165 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--YIVH 165 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--EEEE
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--EEEE
Confidence 8899999999999765 455455554 4556799999999 887776 45789999999987643 3323
Q ss_pred -ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-Eeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 75 -DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 75 -~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
..+...+.+++|+|++.++++|+.||.|++||+++.... ..+. |..+|.+++|+|++..|++++. +.|++||++.
T Consensus 166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~ 244 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRK 244 (343)
T ss_dssp CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTS
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCC
Confidence 345567999999999999999999999999999987765 4443 5789999999999999999994 4999999999
Q ss_pred Ccceeec
Q 042260 151 NSCSCEL 157 (174)
Q Consensus 151 ~~~~~~~ 157 (174)
..+...+
T Consensus 245 ~~~~~~~ 251 (343)
T 3lrv_A 245 DVGTLAY 251 (343)
T ss_dssp STTCBSS
T ss_pred CCcceee
Confidence 8776543
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=1e-23 Score=159.05 Aligned_cols=145 Identities=17% Similarity=0.313 Sum_probs=124.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC-CCceEEE-ecCCcEEEEEcCCCCCCCeEEe---ecCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYLAA-AGNPHIRLFDVNSSSPQPVMSY---DQHTN 79 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~---~~~~~ 79 (174)
+.+|++|+.|++|++||+++++.+..+..|...|.+++|+| ++.++++ +.|+.|++||++++ .....+ ..|..
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD--TLVAIFGGVEGHRD 162 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT--EEEEEECSTTSCSS
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC--eEEEEecccccccC
Confidence 67899999999999999999999999998999999999999 7776655 56889999999876 334444 57899
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-----------------------------ccCcEEEEEEccC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-----------------------------SRAAVNTVVLHPN 130 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~ 130 (174)
.+.+++|++++++|++++.||.|++||++.......+. +...|.+++|+
T Consensus 163 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 99999999999999999999999999998754332221 66789999998
Q ss_pred CCEEEEeeCCCcEEEEeCCCCcc
Q 042260 131 QTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
++.+++++.|+.|++||++...+
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTC
T ss_pred CCEEEEEecCCEEEEEeCCCccc
Confidence 67999999999999999998765
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.5e-22 Score=154.82 Aligned_cols=161 Identities=16% Similarity=0.284 Sum_probs=132.0
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
.+++++.|++|++||+.+++....+.. +...|.+++|+|++.+++++ .|+.+++||+.++ .....+..|...+.++
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMAGHQARVGCL 182 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEE
T ss_pred CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEecCCCCceEEE
Confidence 377889999999999999998877775 67789999999998877654 6889999999876 4456677899999999
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCC-CeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccc
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRA-PVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYG 162 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 162 (174)
+| +++.+++|+.||.|++||++. ......+ .+...|.+++|+|+++.|++|+.|+.|++||++.+.....+.....
T Consensus 183 ~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 260 (401)
T 4aez_A 183 SW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA 260 (401)
T ss_dssp EE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS
T ss_pred EE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc
Confidence 99 578999999999999999984 3334333 5678899999999999999999999999999999888877654444
Q ss_pred eeEEEEEee
Q 042260 163 LRTFLFYHQ 171 (174)
Q Consensus 163 ~~~~~~~~~ 171 (174)
...-+-++|
T Consensus 261 ~v~~~~~~p 269 (401)
T 4aez_A 261 AVKAVAWCP 269 (401)
T ss_dssp CCCEEEECT
T ss_pred eEEEEEECC
Confidence 444444444
No 74
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=1.1e-23 Score=164.25 Aligned_cols=151 Identities=20% Similarity=0.316 Sum_probs=120.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecC--CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP--DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.+|+|||.|++|++||++++........+ ...+.+++|+|++.+++++ .|+.|++||++.. .+..+..|...
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~---~~~~~~~h~~~ 252 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK---ELWNLRMHKKK 252 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC---BCCCSBCCSSC
T ss_pred CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc---eeEEEecccce
Confidence 4568999999999999999876443322222 3346789999998877655 6889999999754 23446689999
Q ss_pred EEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEe----ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 81 VMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQME----YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 81 v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
|.+++|+|++. ++++|+.|+.|++||++....... ..|..+|.+++|+|+++.|++++.|+.|++||++...+..
T Consensus 253 v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 253 VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred EEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence 99999999875 788999999999999987543322 3467789999999999999999999999999999887665
Q ss_pred ec
Q 042260 156 EL 157 (174)
Q Consensus 156 ~~ 157 (174)
.+
T Consensus 333 ~~ 334 (435)
T 4e54_B 333 GL 334 (435)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.91 E-value=4.4e-23 Score=157.80 Aligned_cols=148 Identities=13% Similarity=0.202 Sum_probs=117.9
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEe--ecCCCCeEEEEEcCCCceEEEe-cCC----cEEEEEcCCCCCCC--eEE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTI--QYPDSQVNRLEITPNKHYLAAA-GNP----HIRLFDVNSSSPQP--VMS 73 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~-~d~----~i~i~d~~~~~~~~--~~~ 73 (174)
+++.+|++++.| .+++|+..+++.+... ..|...+..++|+|++..++++ .++ .+++|++....... ...
T Consensus 186 pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~ 264 (365)
T 4h5i_A 186 TDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ 264 (365)
T ss_dssp TTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee
Confidence 457788888855 5677777777765433 3466779999999998877654 443 46788876543222 234
Q ss_pred eecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 74 YDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 74 ~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
+..|...|.+++|+|+|++||+|+.|+.|+|||+++.+++.++ .|..+|.+++|+|+++.|++|+.|++||+||+...
T Consensus 265 ~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 265 VTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 5678899999999999999999999999999999999888775 36789999999999999999999999999999643
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.2e-22 Score=155.13 Aligned_cols=162 Identities=19% Similarity=0.327 Sum_probs=135.0
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
++.+|++|+.||.|++||+++++.+..+..|...|.++.|++ ..+++++.|+.+++||++... .....+..|...+.+
T Consensus 145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~ 222 (401)
T 4aez_A 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIAN-HQIGTLQGHSSEVCG 222 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEE
T ss_pred CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCc-ceeeEEcCCCCCeeE
Confidence 566899999999999999999999999999999999999954 345556678999999998543 345567789999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCC-EEEEee--CCCcEEEEeCCCCcceeecCc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQT-ELISGD--QNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~--~d~~i~iwd~~~~~~~~~~~~ 159 (174)
++|++++++|++|+.|+.|++||+++......+ .+...|.+++|+|++. .+++++ .|+.|++||++++.+...+..
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~ 302 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA 302 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 999999999999999999999999988777666 4678899999999765 555654 799999999999988877765
Q ss_pred ccceeEEE
Q 042260 160 QYGLRTFL 167 (174)
Q Consensus 160 ~~~~~~~~ 167 (174)
...+....
T Consensus 303 ~~~v~~~~ 310 (401)
T 4aez_A 303 GSQVTSLI 310 (401)
T ss_dssp SSCEEEEE
T ss_pred CCcEEEEE
Confidence 55544433
No 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.5e-23 Score=150.85 Aligned_cols=151 Identities=22% Similarity=0.379 Sum_probs=125.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++..+++++.|+.|++|| .++....+.. +...+..+.|+|++.+++++.++.+++||++++ ..+..+..|...+.
T Consensus 154 ~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG--DVLRTYEGHESFVY 229 (313)
T ss_dssp TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEE
T ss_pred CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch--hhhhhhhcCCceEE
Confidence 455789999999999999 4556666665 778899999999988777788999999999876 45666778999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
+++|++++ .+++++.||.|++||+++......+. +..+|.+++|+|+++ +++++.||.|++||+++++...+.+..
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIK 306 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-----
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhh
Confidence 99999998 58999999999999999888776664 456899999999998 667999999999999988776655443
No 78
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.7e-22 Score=158.00 Aligned_cols=154 Identities=15% Similarity=0.187 Sum_probs=129.2
Q ss_pred CcEE-EEEeeCCCcEEEEECC--CCceeEEee--cCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCC--CeEEee
Q 042260 4 PSVI-LATASYDKTIKFWEAK--SGRCYRTIQ--YPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQ--PVMSYD 75 (174)
Q Consensus 4 ~~~~-l~s~s~D~~v~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~--~~~~~~ 75 (174)
++.. +++|+.|++|++||+. +++.+..+. .+...|.+++|+|++.+++++ .++.+++|++.+.... ....+.
T Consensus 113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~ 192 (450)
T 2vdu_B 113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL 192 (450)
T ss_dssp TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE
T ss_pred CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee
Confidence 3444 5999999999999998 888888776 456789999999998776654 6788999999776543 223456
Q ss_pred cCCCCEEEEEEeeC---CCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 76 QHTNNVMAVGFQCD---GNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 76 ~~~~~v~~~~~~~~---~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.|...+.+++|+|+ +++|++|+.|+.|++||+++..+...+ .+...|.+++|+ ++..|++++.|+.|++||+++
T Consensus 193 ~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 193 GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT
T ss_pred cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC
Confidence 78999999999999 999999999999999999987766553 467889999999 999999999999999999999
Q ss_pred CcceeecC
Q 042260 151 NSCSCELG 158 (174)
Q Consensus 151 ~~~~~~~~ 158 (174)
+++...+.
T Consensus 272 ~~~~~~~~ 279 (450)
T 2vdu_B 272 GKNLSTFD 279 (450)
T ss_dssp CCEEEEEE
T ss_pred CcEeeeec
Confidence 98876654
No 79
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.7e-22 Score=149.91 Aligned_cols=161 Identities=20% Similarity=0.396 Sum_probs=133.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cC-----CcEEEEEcCCCCCC--------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GN-----PHIRLFDVNSSSPQ-------- 69 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d-----~~i~i~d~~~~~~~-------- 69 (174)
++.+|++++.|++|++||+++++.+..+. +...+..+.|+|++..++++ .+ +.+++||+......
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 163 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE 163 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc
Confidence 46689999999999999999999998887 66789999999998877665 45 78999999765421
Q ss_pred -CeEEeecCCC--CEEEEEEeeCCCEEEEecCCCcEEEEeCCC-CeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260 70 -PVMSYDQHTN--NVMAVGFQCDGNWMYSGSEDGTVKIWDLRA-PVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIR 144 (174)
Q Consensus 70 -~~~~~~~~~~--~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~ 144 (174)
.......|.. .+.+++|+++++++++++.||.|++||++. ......+. +...|.+++|+|+++.|++++.|+.|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 243 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSF 243 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEE
Confidence 2233344555 899999999999999999999999999998 56555554 577899999999999999999999999
Q ss_pred EEeCCCCcceeecCcccceeE
Q 042260 145 VWDLTANSCSCELGLQYGLRT 165 (174)
Q Consensus 145 iwd~~~~~~~~~~~~~~~~~~ 165 (174)
+||+++.++...+.....+..
T Consensus 244 v~d~~~~~~~~~~~~~~~~~~ 264 (369)
T 3zwl_B 244 LVDVSTLQVLKKYETDCPLNT 264 (369)
T ss_dssp EEETTTCCEEEEEECSSCEEE
T ss_pred EEECCCCceeeeecCCCCcee
Confidence 999999988877764444433
No 80
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.8e-23 Score=157.18 Aligned_cols=165 Identities=15% Similarity=0.236 Sum_probs=137.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCC---------------eEEEEEcCCCceEEEecCCcEEEEEcCCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQ---------------VNRLEITPNKHYLAAAGNPHIRLFDVNSSSP 68 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 68 (174)
++..|++++.|+.|++||+++++.+..+..+... +.++.|++++.+++++.++.+++||++.+
T Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-- 237 (425)
T 1r5m_A 160 DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-- 237 (425)
T ss_dssp TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS--
T ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC--
Confidence 4668999999999999999999998888776655 88899999988888888999999999876
Q ss_pred CCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
.....+..|...+.+++|++++++|++++.|+.|++||++.......+. +...|.+++|+|++ .+++++.|+.|++||
T Consensus 238 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWS 316 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEE
Confidence 4455567899999999999999999999999999999999877666664 67889999999998 999999999999999
Q ss_pred CCCCcceeecCcccceeEEEEEee
Q 042260 148 LTANSCSCELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~ 171 (174)
++++++...+........-+-+++
T Consensus 317 ~~~~~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 317 LKQNTLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp TTTTEEEEEEECTTCCEEEEEECT
T ss_pred CCCCcEeEecccCCccEEEEEEcC
Confidence 999888877654444444444444
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.91 E-value=6.9e-23 Score=154.19 Aligned_cols=152 Identities=14% Similarity=0.319 Sum_probs=125.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCc-eeEEeecCCCCeEEEEE------cCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeec
Q 042260 5 SVILATASYDKTIKFWEAKSGR-CYRTIQYPDSQVNRLEI------TPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
+.+|++|+.|++|++||+++++ .+..+..|...|.++.| +|++.++++ +.|+.+++||++.++. +...+..
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~ 158 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-PVANMEP 158 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-CSEEECC
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-cceeccc
Confidence 5789999999999999999988 78888889899999955 566766554 5788999999987642 3444444
Q ss_pred CCC----CEEEEE----EeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc---CCCEEEEeeCCCcEEE
Q 042260 77 HTN----NVMAVG----FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP---NQTELISGDQNGNIRV 145 (174)
Q Consensus 77 ~~~----~v~~~~----~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~i~i 145 (174)
|.. .+.+++ |+++++++++++.|+.|++||+++........+...|.+++|+| +++.|++++.||.|++
T Consensus 159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 433 788888 67899999999999999999999988877777888999999999 8999999999999999
Q ss_pred EeCCCCcceeec
Q 042260 146 WDLTANSCSCEL 157 (174)
Q Consensus 146 wd~~~~~~~~~~ 157 (174)
||++.+.+...+
T Consensus 239 ~d~~~~~~~~~~ 250 (357)
T 3i2n_A 239 FDMRTQHPTKGF 250 (357)
T ss_dssp EEEEEEETTTEE
T ss_pred EeCcCCCcccce
Confidence 999987665443
No 82
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=9.6e-23 Score=158.72 Aligned_cols=167 Identities=19% Similarity=0.264 Sum_probs=131.6
Q ss_pred cEEEEEeeCCCcEEEEECCC----------CceeEEeecCCCCeEEEEEcCCCc-eEE-EecCCcEEEEEcCCCCC----
Q 042260 5 SVILATASYDKTIKFWEAKS----------GRCYRTIQYPDSQVNRLEITPNKH-YLA-AAGNPHIRLFDVNSSSP---- 68 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~~~~---- 68 (174)
+.+|++++.||+|++||+.+ .+.+..+..|...+.+++|+|.+. +++ ++.|+.|++||+.....
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 220 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 220 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence 67899999999999999876 566778888888999999999876 555 45688999999987432
Q ss_pred -CCeEEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCC---eeEEee-cccCcEEEEEEccCCC-EEEEeeCCC
Q 042260 69 -QPVMSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAP---VCQMEY-ESRAAVNTVVLHPNQT-ELISGDQNG 141 (174)
Q Consensus 69 -~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~---~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~ 141 (174)
.....+..|...+.+++|++ ++..|++++.||.|++||++.. .....+ .+...|++++|+|+++ .+++|+.||
T Consensus 221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg 300 (430)
T 2xyi_A 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300 (430)
T ss_dssp EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence 12345668999999999999 7889999999999999999875 344444 5678899999999887 688999999
Q ss_pred cEEEEeCCC-CcceeecCcccceeEEEEEee
Q 042260 142 NIRVWDLTA-NSCSCELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (174)
.|++||++. ......+........-+-++|
T Consensus 301 ~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp EEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred eEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence 999999998 445555543344444444444
No 83
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.9e-24 Score=169.49 Aligned_cols=144 Identities=8% Similarity=0.059 Sum_probs=117.9
Q ss_pred EEEEEeeCCCcEEEEECCCCce-eEEeecCCCCeEEE--EEcCCC-ceEE-EecCCcEEEEEcCCCCCCCeEEeecCC--
Q 042260 6 VILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRL--EITPNK-HYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHT-- 78 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~-~~~~~~~~~~v~~~--~~~~~~-~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~-- 78 (174)
..|++|+.||+|++||+++++. ...+..|...|.++ .|++++ .+++ ++.|+.+++||+++++ ....+.+|.
T Consensus 278 ~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~--~~~~~~~~~~~ 355 (524)
T 2j04_B 278 TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA--TTKTTVSRFRG 355 (524)
T ss_dssp SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH--HHCEEEEECSC
T ss_pred CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC--ccccccccccc
Confidence 3799999999999999998744 45677888899998 567776 5554 5678999999998753 233344454
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
..+.+++|+|+++.+++++.|+.|++||++...+..++ .|...|.+++|+|+++.|++|+.||+|++||+...
T Consensus 356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 25788999999999999999999999999987765444 57789999999999999999999999999998653
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=1.3e-22 Score=174.99 Aligned_cols=153 Identities=23% Similarity=0.450 Sum_probs=135.5
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++.+|++|+.|++|++||+.+++.+..+..|...|.+++|+|++.+++++ .|+.|++||+.++ .....+..|...+
T Consensus 625 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~v 702 (1249)
T 3sfz_A 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVHTYDEHSEQV 702 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ceEEEEcCCCCcE
Confidence 356789999999999999999999999999999999999999998877654 6789999999877 4566678899999
Q ss_pred EEEEEee--CCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 82 MAVGFQC--DGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 82 ~~~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.+++|++ ++.++++|+.|+.|++||+++..+...+ .+...|.+++|+|+++.+++++.||.|++||++++.+...+
T Consensus 703 ~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 703 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp EEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred EEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCccccee
Confidence 9999998 5668999999999999999998877666 46788999999999999999999999999999988766544
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.3e-22 Score=150.76 Aligned_cols=166 Identities=16% Similarity=0.273 Sum_probs=133.0
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++.+|++|+.|+.|++||+.+++.+..+..|...|.+++|+|++.++++ +.|+.|++||+.+++ ....+. +...+
T Consensus 42 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~-~~~~v 118 (369)
T 3zwl_B 42 KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ--CVATWK-SPVPV 118 (369)
T ss_dssp TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--EEEEEE-CSSCE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEee-cCCCe
Confidence 35678999999999999999999999999989999999999998877665 568899999998764 344444 78899
Q ss_pred EEEEEeeCCCEEEEecCC-----CcEEEEeCCCCee-----------E-EeecccC--cEEEEEEccCCCEEEEeeCCCc
Q 042260 82 MAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVC-----------Q-MEYESRA--AVNTVVLHPNQTELISGDQNGN 142 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~-----------~-~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~ 142 (174)
.+++|+++++++++++.+ +.|++||++.... . ....+.. .+.+++|+|+++.|++++.||.
T Consensus 119 ~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 198 (369)
T 3zwl_B 119 KRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198 (369)
T ss_dssp EEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE
T ss_pred EEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE
Confidence 999999999999999999 9999999865321 1 1112222 8999999999999999999999
Q ss_pred EEEEeCCC-CcceeecCcccceeEEEEEee
Q 042260 143 IRVWDLTA-NSCSCELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 143 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (174)
|++||+++ ......+........-+.+++
T Consensus 199 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 228 (369)
T 3zwl_B 199 ISKYDVSNNYEYVDSIDLHEKSISDMQFSP 228 (369)
T ss_dssp EEEEETTTTTEEEEEEECCSSCEEEEEECT
T ss_pred EEEEECCCCcEeEEEEecCCCceeEEEECC
Confidence 99999998 566666654444444444444
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=1.3e-22 Score=152.91 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=123.7
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeec-----CCCCeEEEEEcCC----CceEE-EecCCcEEEEEcCCCCCCCeEEeec
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQY-----PDSQVNRLEITPN----KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
.+++++.++.|++||+.+++.+..+.. +...|.+++|+|+ +.+++ ++.|+.|++||+.++ .....+..
T Consensus 36 ~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~ 113 (366)
T 3k26_A 36 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--QCIKHYVG 113 (366)
T ss_dssp EEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--CEEEEEES
T ss_pred eEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--eEeeeecC
Confidence 455555566999999998887766653 4467999999998 44555 557889999999876 44566778
Q ss_pred CCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEee----cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 77 HTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY----ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 77 ~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
|...+.+++|++ ++++|++++.||.|++||++.......+ .+...|.+++|+|+++.|++++.||.|++||++++
T Consensus 114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 193 (366)
T 3k26_A 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 193 (366)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence 999999999999 8999999999999999999998877776 46788999999999999999999999999999987
Q ss_pred cceee
Q 042260 152 SCSCE 156 (174)
Q Consensus 152 ~~~~~ 156 (174)
+....
T Consensus 194 ~~~~~ 198 (366)
T 3k26_A 194 RMMNA 198 (366)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 65543
No 87
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.91 E-value=1.2e-22 Score=168.30 Aligned_cols=154 Identities=20% Similarity=0.424 Sum_probs=133.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+++.+|++|+.||+|++||+.+++.+..+..|...|.+++|+|++..+++ +.|+.|++||+.++ .....+..|...+
T Consensus 23 p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~v 100 (814)
T 3mkq_A 23 PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYI 100 (814)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCE
Confidence 35678999999999999999999999999999999999999999887665 46789999999876 4455677899999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCC-eeEEee-cccCcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAP-VCQMEY-ESRAAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
.+++|++++.++++++.||.|++||++.. .....+ .+..+|.+++|+| +++.+++++.||.|++||++.+.....+.
T Consensus 101 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 180 (814)
T 3mkq_A 101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (814)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred EEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe
Confidence 99999999999999999999999999875 444444 4678899999999 78899999999999999999877666553
No 88
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.8e-23 Score=157.56 Aligned_cols=144 Identities=14% Similarity=0.167 Sum_probs=125.8
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
++.+|++++.|+.|++||+++++.+..+..+...+.++.|+|++.+++++.|+.+++||++++ .....+..|...+.+
T Consensus 258 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~ 335 (425)
T 1r5m_A 258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN--TLLALSIVDGVPIFA 335 (425)
T ss_dssp TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT--EEEEEEECTTCCEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC--cEeEecccCCccEEE
Confidence 455899999999999999999999988888888999999999985556678899999999876 445566778899999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCe--------------------eEEeeccc--C-cEEEEEEccCCCEEEEeeCC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPV--------------------CQMEYESR--A-AVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~--------------------~~~~~~~~--~-~v~~~~~~~~~~~l~s~~~d 140 (174)
++|++++++|++++.||.|++||++... ....+..+ . .|.+++|+|+++.|++++.|
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 415 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL 415 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence 9999999999999999999999998765 55555433 3 89999999999999999999
Q ss_pred CcEEEEeCC
Q 042260 141 GNIRVWDLT 149 (174)
Q Consensus 141 ~~i~iwd~~ 149 (174)
|.|++||++
T Consensus 416 g~i~iw~~~ 424 (425)
T 1r5m_A 416 QEGSVVAIP 424 (425)
T ss_dssp SCCEEEECC
T ss_pred ceEEEEeec
Confidence 999999986
No 89
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=1.2e-22 Score=152.32 Aligned_cols=154 Identities=14% Similarity=0.222 Sum_probs=128.4
Q ss_pred cEEEEEeeCCCcEEEEECCC---------CceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCC-CCCCCeEEe
Q 042260 5 SVILATASYDKTIKFWEAKS---------GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS-SSPQPVMSY 74 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~ 74 (174)
+..|++++.|++|++||+++ ++.+..+. +...+.+++|++++ +++++.++.+++||++. .........
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~ 189 (342)
T 1yfq_A 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEE 189 (342)
T ss_dssp TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEE
T ss_pred CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeee
Confidence 45789999999999999987 77776666 67789999999987 67777889999999987 543344445
Q ss_pred ecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCC------eeEEeec-cc---------CcEEEEEEccCCCEEEEe
Q 042260 75 DQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAP------VCQMEYE-SR---------AAVNTVVLHPNQTELISG 137 (174)
Q Consensus 75 ~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~------~~~~~~~-~~---------~~v~~~~~~~~~~~l~s~ 137 (174)
..|...+.+++|++ +++++++++.||.+++||++.. .....+. +. ..|.+++|+|+++.|+++
T Consensus 190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 269 (342)
T 1yfq_A 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA 269 (342)
T ss_dssp CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence 56788999999999 9999999999999999999765 4444443 22 389999999999999999
Q ss_pred eCCCcEEEEeCCCCcceeecCcc
Q 042260 138 DQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 138 ~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
+.||.|++||++++++...+...
T Consensus 270 ~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 270 GSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp ETTSCEEEEETTTTEEEEECCCC
T ss_pred cCCceEEEEcCccHhHhhhhhcc
Confidence 99999999999999888777643
No 90
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-22 Score=168.63 Aligned_cols=170 Identities=17% Similarity=0.242 Sum_probs=135.7
Q ss_pred CCcEEEEEeeCCCcEEEEECC--CCceeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecC
Q 042260 3 QPSVILATASYDKTIKFWEAK--SGRCYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
.++.+|++|+.||+|++||+. +++.+..+..|...|.+++|+++ +.+++ ++.|+.|++||+.++.......+..|
T Consensus 19 ~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h 98 (753)
T 3jro_A 19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH 98 (753)
T ss_dssp SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCC
Confidence 356789999999999999987 55677788889899999999876 66554 56789999999988754456667789
Q ss_pred CCCEEEEEEeeC--CCEEEEecCCCcEEEEeCCCCe---eEEeecccCcEEEEEEcc-------------CCCEEEEeeC
Q 042260 78 TNNVMAVGFQCD--GNWMYSGSEDGTVKIWDLRAPV---CQMEYESRAAVNTVVLHP-------------NQTELISGDQ 139 (174)
Q Consensus 78 ~~~v~~~~~~~~--~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~-------------~~~~l~s~~~ 139 (174)
...+.+++|+|+ ++.+++|+.||.|++||++... ......+...|.+++|+| ++..+++|+.
T Consensus 99 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~ 178 (753)
T 3jro_A 99 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (753)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET
T ss_pred CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC
Confidence 999999999999 9999999999999999998762 222335678899999999 4889999999
Q ss_pred CCcEEEEeCCCCcc----eeecCcccceeEEEEEeec
Q 042260 140 NGNIRVWDLTANSC----SCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 140 d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~ 172 (174)
||.|++||++.+.. ...+..+.....-+-++|+
T Consensus 179 dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccC
Confidence 99999999998743 3344433444444555544
No 91
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.3e-23 Score=156.68 Aligned_cols=150 Identities=16% Similarity=0.331 Sum_probs=127.5
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecC------CCCeEEEEEcCCC-ceEEE-ecCC---cEEEEEcCCCCCCCeEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYP------DSQVNRLEITPNK-HYLAA-AGNP---HIRLFDVNSSSPQPVMS 73 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~~~~-~~d~---~i~i~d~~~~~~~~~~~ 73 (174)
+.+|++++.|++|++||+++++.+..+..+ ...+.+++|+|++ .++++ +.++ .|++||++... .+...
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~ 256 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQT 256 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBC
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEE
Confidence 568999999999999999999998888766 6789999999986 45544 4566 89999998753 23444
Q ss_pred ee-cCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCC
Q 042260 74 YD-QHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLT 149 (174)
Q Consensus 74 ~~-~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~ 149 (174)
+. .|...+.+++|+| ++++|++++.|+.|++||+++......+. +...|.+++|+|++ ..|++++.|+.|++||++
T Consensus 257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 55 7899999999999 89999999999999999999888776664 56789999999998 799999999999999999
Q ss_pred CCccee
Q 042260 150 ANSCSC 155 (174)
Q Consensus 150 ~~~~~~ 155 (174)
......
T Consensus 337 ~~~~~~ 342 (416)
T 2pm9_A 337 NLTNTL 342 (416)
T ss_dssp CCCCSS
T ss_pred CCCCCc
Confidence 876543
No 92
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.90 E-value=7.3e-23 Score=158.74 Aligned_cols=151 Identities=20% Similarity=0.329 Sum_probs=121.3
Q ss_pred EEEEEeeCCCcEEEEECCCCcee---------------------------------------EE-eecCCCCeEEEEEcC
Q 042260 6 VILATASYDKTIKFWEAKSGRCY---------------------------------------RT-IQYPDSQVNRLEITP 45 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~~ 45 (174)
..|++++.|++|++||+.+++.. .. ...|...|.+++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 47889999999999998765432 12 245778899999999
Q ss_pred CCceEEEecCCcEEEEEcCCCCCCCeE-------EeecCCCCEEEEEEeeCC-CEEEEecCCCcEEEEeCCCCee----E
Q 042260 46 NKHYLAAAGNPHIRLFDVNSSSPQPVM-------SYDQHTNNVMAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVC----Q 113 (174)
Q Consensus 46 ~~~~~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~----~ 113 (174)
++.+++++.|+.|++||++... .... .+..|...+.+++|+|++ ++|++|+.||.|++||++.... .
T Consensus 188 ~~~~l~s~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 188 DYETYLSADDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp TSSEEEEECSSEEEEEETTEEE-EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CCCEEEEeCCCeEEEEECCCCC-ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 9998887788999999997432 1111 245788999999999998 9999999999999999988764 4
Q ss_pred Eeeccc-C------------cEEEEEEccCCCEEEEeeCCCcEEEEeCCC-CcceeecC
Q 042260 114 MEYESR-A------------AVNTVVLHPNQTELISGDQNGNIRVWDLTA-NSCSCELG 158 (174)
Q Consensus 114 ~~~~~~-~------------~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~ 158 (174)
..+..+ . .|.+++|+|+++.|++++. +.|++||++. +.+...+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~ 324 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ 324 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence 444433 2 8999999999999999998 9999999997 66665554
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.90 E-value=7.6e-22 Score=153.64 Aligned_cols=144 Identities=23% Similarity=0.406 Sum_probs=118.3
Q ss_pred EEEEeeCCCcEEEEECCCCce-------eEEeecCCCCeEEEEEcC-CCceEE-EecCCcEEEEEcCCCC-CCCeEEeec
Q 042260 7 ILATASYDKTIKFWEAKSGRC-------YRTIQYPDSQVNRLEITP-NKHYLA-AAGNPHIRLFDVNSSS-PQPVMSYDQ 76 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~~~-~~~d~~i~i~d~~~~~-~~~~~~~~~ 76 (174)
+|++|+.||+|++||+.++.. ...+..|...|.+++|+| .+.+++ ++.|+.|++||++... ......+..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 799999999999999987432 345557888899999999 555554 4578999999998763 244556678
Q ss_pred CCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCC-CeeEEee-cccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCC
Q 042260 77 HTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRA-PVCQMEY-ESRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~ 150 (174)
|...+.+++|++++. ++++|+.||.|++||++. ......+ .+...|.+++|+|+++ .|++++.|+.|++||++.
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 999999999999887 799999999999999987 3344444 4678899999999885 688999999999999997
No 94
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.90 E-value=6.3e-22 Score=151.23 Aligned_cols=151 Identities=20% Similarity=0.355 Sum_probs=121.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eE-EEecCCcEEEEEcCCCCCCCeEEe--------
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YL-AAAGNPHIRLFDVNSSSPQPVMSY-------- 74 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~~~~-------- 74 (174)
+.++++++.|+.|++||+++++.+..+..|...|.+++|+|++. ++ +++.|+.+++||++.... ....+
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~ 234 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKS 234 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSC
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccc
Confidence 45899999999999999999999999988989999999999876 34 456789999999976542 12222
Q ss_pred -------ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-----------------------------------
Q 042260 75 -------DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC----------------------------------- 112 (174)
Q Consensus 75 -------~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~----------------------------------- 112 (174)
..|...+.+++|++++++|++++.||.|++||+++...
T Consensus 235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
T 4a11_B 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314 (408)
T ss_dssp CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence 46888999999999999999999999999999875321
Q ss_pred ------------EEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 113 ------------QMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 113 ------------~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
...+ .+...|.+++|+|+++.|++++.||.|++||++..+....
T Consensus 315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 2222 2567899999999999999999999999999998876544
No 95
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.9e-22 Score=145.37 Aligned_cols=160 Identities=21% Similarity=0.343 Sum_probs=131.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC-CCceE-EEecCCcEEEEEcCCCCCCCeEEeec-CCCCE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYL-AAAGNPHIRLFDVNSSSPQPVMSYDQ-HTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~v 81 (174)
+..+++++.|++|++|| .++....+..+...+..+.+.| ++..+ +++.|+.+++||.. .....+.. |...+
T Consensus 114 ~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~i 187 (313)
T 3odt_A 114 DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND----KVIKTFSGIHNDVV 187 (313)
T ss_dssp TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----EEEEEECSSCSSCE
T ss_pred CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC----ceEEEEeccCcccE
Confidence 34789999999999999 6777888888888999999987 55554 45678899999943 23444555 88999
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
.+++|++++. +++++.||.|++||+++......+. +..+|.+++|+|++ .+++++.||.|++||++++++...+..+
T Consensus 188 ~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 265 (313)
T 3odt_A 188 RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP 265 (313)
T ss_dssp EEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred EEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence 9999999988 9999999999999999888777664 67889999999998 5899999999999999999988887766
Q ss_pred cceeEEEEEeec
Q 042260 161 YGLRTFLFYHQD 172 (174)
Q Consensus 161 ~~~~~~~~~~~~ 172 (174)
.....-+.++++
T Consensus 266 ~~~i~~~~~~~~ 277 (313)
T 3odt_A 266 AISIWSVDCMSN 277 (313)
T ss_dssp SSCEEEEEECTT
T ss_pred CceEEEEEEccC
Confidence 655555555554
No 96
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.8e-23 Score=161.21 Aligned_cols=153 Identities=15% Similarity=0.297 Sum_probs=119.7
Q ss_pred CcEEEEEeeCCCcEEEEECC---CCceeEEeec------------CCCCeEEEE--EcCCCceEE-EecCCcEEEEEcCC
Q 042260 4 PSVILATASYDKTIKFWEAK---SGRCYRTIQY------------PDSQVNRLE--ITPNKHYLA-AAGNPHIRLFDVNS 65 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~~~-~~~d~~i~i~d~~~ 65 (174)
++.+|++|+.|++|++||++ +++....... +...+.++. +++++.+++ ++.|+.|++||+++
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 46689999999999999985 5554443332 233455555 445666655 45788999999987
Q ss_pred CCCCCeEEeec--CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEcc----CCCEEEEe
Q 042260 66 SSPQPVMSYDQ--HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHP----NQTELISG 137 (174)
Q Consensus 66 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~----~~~~l~s~ 137 (174)
++ .+..+.. |...+.+++|+++++++++|+.||.|++||++...+...+ .+..+|.+++++| ++..|++|
T Consensus 202 ~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~ 279 (437)
T 3gre_A 202 LE--RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG 279 (437)
T ss_dssp CC--EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE
T ss_pred Ce--eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE
Confidence 64 4555555 8899999999999999999999999999999998887765 5567899996664 57789999
Q ss_pred eCCCcEEEEeCCCCcceeecC
Q 042260 138 DQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 138 ~~d~~i~iwd~~~~~~~~~~~ 158 (174)
+.||.|++||++++++...+.
T Consensus 280 ~~dg~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 280 SSKTFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp STTEEEEEEETTTTEEEEEEE
T ss_pred cCCCcEEEEEcCCCcEEEEEE
Confidence 999999999999988776543
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.90 E-value=1.5e-21 Score=151.89 Aligned_cols=154 Identities=20% Similarity=0.366 Sum_probs=129.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCC-eEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQP-VMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~v~ 82 (174)
++.+|++|+.||+|++||+++++.+..+..|...|.++.|++ +.+++++.|+.+++||++++.... ...+.+|...+.
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 356899999999999999999999999998988999999975 356666789999999998764332 245678999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
++++ +++++++|+.||.|++||+++..+...+. +...|.++.+ +++.+++|+.||.|++||++++.+...+....
T Consensus 261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 336 (435)
T 1p22_A 261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 336 (435)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc
Confidence 9998 68999999999999999999988777764 5678999888 56899999999999999999999888776433
Q ss_pred c
Q 042260 162 G 162 (174)
Q Consensus 162 ~ 162 (174)
.
T Consensus 337 ~ 337 (435)
T 1p22_A 337 E 337 (435)
T ss_dssp S
T ss_pred C
Confidence 3
No 98
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.6e-22 Score=165.51 Aligned_cols=148 Identities=21% Similarity=0.374 Sum_probs=126.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+.+|++|+.||+|++||+.+++ .+..+..|...|.++.|+|+ +..++ ++.|+.+++||++.+..........|..
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 6789999999999999999887 66777778889999999997 66555 5578899999998875555666778999
Q ss_pred CEEEEEEee-------------CCCEEEEecCCCcEEEEeCCCC----eeEEee-cccCcEEEEEEccC---CCEEEEee
Q 042260 80 NVMAVGFQC-------------DGNWMYSGSEDGTVKIWDLRAP----VCQMEY-ESRAAVNTVVLHPN---QTELISGD 138 (174)
Q Consensus 80 ~v~~~~~~~-------------~~~~l~t~~~dg~v~iwd~~~~----~~~~~~-~~~~~v~~~~~~~~---~~~l~s~~ 138 (174)
.+.+++|+| +++.+++|+.||.|++||++.. .+...+ .+..+|.+++|+|+ ++.|++|+
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 999999999 5899999999999999999865 333333 45788999999999 89999999
Q ss_pred CCCcEEEEeCCCCc
Q 042260 139 QNGNIRVWDLTANS 152 (174)
Q Consensus 139 ~d~~i~iwd~~~~~ 152 (174)
.||.|++||++.+.
T Consensus 227 ~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 227 QDRTCIIWTQDNEQ 240 (753)
T ss_dssp SSSCEEEEEESSSS
T ss_pred cCCEEEEecCCCCC
Confidence 99999999999864
No 99
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.90 E-value=2.1e-22 Score=155.34 Aligned_cols=169 Identities=17% Similarity=0.137 Sum_probs=115.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eE-EEecCCcEEEEEcCCCCCCCe----------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YL-AAAGNPHIRLFDVNSSSPQPV---------- 71 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~---------- 71 (174)
++++|+|||.|++|||||++++..+.....+...+.+++|+|++. ++ +++.|+.|++||+++++....
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 578999999999999999998888888878888999999999764 44 456789999999987542111
Q ss_pred -------------EEeecCCCCEEEEEEe-eCCCEEEEecCCCcEEEEeCCCCeeEEeec-cc-----------------
Q 042260 72 -------------MSYDQHTNNVMAVGFQ-CDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SR----------------- 119 (174)
Q Consensus 72 -------------~~~~~~~~~v~~~~~~-~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~----------------- 119 (174)
.....|...+.++.|. ++++.+++++.|+.+++||++.......+. +.
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 1123566778888887 799999999999999999997644322211 11
Q ss_pred -CcEEEEEEcc-CC-CEEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260 120 -AAVNTVVLHP-NQ-TELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 120 -~~v~~~~~~~-~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
.......++| .+ .++++|+.||.|++||+.++.+..........++-+-+|||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspd 370 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQD 370 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTT
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCC
Confidence 1112233444 33 35677889999999999998877654333334444555665
No 100
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.4e-22 Score=152.91 Aligned_cols=155 Identities=17% Similarity=0.302 Sum_probs=127.3
Q ss_pred CcEEEEEeeCCCcEEEEECCC----CceeEEeecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCC------CC-C
Q 042260 4 PSVILATASYDKTIKFWEAKS----GRCYRTIQYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSS------PQ-P 70 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~------~~-~ 70 (174)
++.+|++|+.|++|++||+.+ .+.+..+..|...|.+++|+|+ +.++++ +.|+.|++||+++.+ .. .
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 566899999999999999987 3577788888899999999997 666554 568899999998764 11 1
Q ss_pred eEEeecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeecc-------cCcEEEEEEccCC-CEEEEeeCCC
Q 042260 71 VMSYDQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYES-------RAAVNTVVLHPNQ-TELISGDQNG 141 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~l~s~~~d~ 141 (174)
......|...+.+++|+++ +.++++++.|+.|++||++.......+.. ...|.+++|+|++ ..+++++.|+
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence 1223568889999999998 78999999999999999999887776654 5789999999987 6889999998
Q ss_pred ---cEEEEeCCCC-cceeecC
Q 042260 142 ---NIRVWDLTAN-SCSCELG 158 (174)
Q Consensus 142 ---~i~iwd~~~~-~~~~~~~ 158 (174)
.|++||++.. .....+.
T Consensus 238 ~~~~i~~~d~~~~~~~~~~~~ 258 (416)
T 2pm9_A 238 NDPSILIWDLRNANTPLQTLN 258 (416)
T ss_dssp SSCCCCEEETTSTTSCSBCCC
T ss_pred CCceEEEEeCCCCCCCcEEee
Confidence 9999999986 4445554
No 101
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.90 E-value=1.3e-21 Score=147.18 Aligned_cols=163 Identities=20% Similarity=0.338 Sum_probs=125.8
Q ss_pred cEEEEEeeC---CCcEEEEECCCCceeEEee-cCCCCeEEEEEcCC---CceEE-EecCCcEEEEEcCCCCCCCeEEeec
Q 042260 5 SVILATASY---DKTIKFWEAKSGRCYRTIQ-YPDSQVNRLEITPN---KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 5 ~~~l~s~s~---D~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
..++++|+. |++|++||+.+++...... .|...|.+++|+|+ +.+++ ++.|+.+++||+.+++ .....+..
T Consensus 31 ~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~ 109 (357)
T 3i2n_A 31 AKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKG 109 (357)
T ss_dssp SEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECC
T ss_pred ceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEe
Confidence 367788887 9999999999988755443 56778999999998 45554 5578999999998764 24566778
Q ss_pred CCCCEEEEEE------eeCCCEEEEecCCCcEEEEeCCCCe-eEEeecc-----cCcEEEEE----EccCCCEEEEeeCC
Q 042260 77 HTNNVMAVGF------QCDGNWMYSGSEDGTVKIWDLRAPV-CQMEYES-----RAAVNTVV----LHPNQTELISGDQN 140 (174)
Q Consensus 77 ~~~~v~~~~~------~~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~-----~~~v~~~~----~~~~~~~l~s~~~d 140 (174)
|...+.++.| ++++++|++++.|+.|++||++... ....+.. ...+.+++ |+|+++.+++++.|
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 189 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN 189 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence 9999999965 6789999999999999999998765 4444432 33788888 78899999999999
Q ss_pred CcEEEEeCCCCcceeecCcccceeEEEE
Q 042260 141 GNIRVWDLTANSCSCELGLQYGLRTFLF 168 (174)
Q Consensus 141 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 168 (174)
|.|++||++++++.....+...+....|
T Consensus 190 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~ 217 (357)
T 3i2n_A 190 GDIKLFDLRNMALRWETNIKNGVCSLEF 217 (357)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred CeEEEEECccCceeeecCCCCceEEEEc
Confidence 9999999999887666555554444433
No 102
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.90 E-value=4.5e-22 Score=164.74 Aligned_cols=168 Identities=21% Similarity=0.379 Sum_probs=141.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++..|++|+.|++|++||+.+++.+..+..|...|.+++|+|++..+++ +.|+.+++||++++. .....+..|...+.
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVM 144 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEE
Confidence 4567999999999999999999999999989999999999999876655 567899999997652 33455678999999
Q ss_pred EEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeec--ccCcEEEEEEcc--CCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 83 AVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHP--NQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 83 ~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
+++|+| +++.+++++.||.|++||++.......+. +...+..++|+| +++.+++++.||.|++||++++.+...+
T Consensus 145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 999999 88999999999999999998766554443 347899999999 8999999999999999999999888887
Q ss_pred CcccceeEEEEEeec
Q 042260 158 GLQYGLRTFLFYHQD 172 (174)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (174)
..+......+-+||+
T Consensus 225 ~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 225 EGHMSNVSFAVFHPT 239 (814)
T ss_dssp ECCSSCEEEEEECSS
T ss_pred cCCCCCEEEEEEcCC
Confidence 655556666666664
No 103
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.5e-22 Score=169.28 Aligned_cols=149 Identities=11% Similarity=0.189 Sum_probs=124.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCe---------EEe
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPV---------MSY 74 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~---------~~~ 74 (174)
+.+|++++.|++|++||+++++++..+. +...|.+++|+|++.++++ +.|+.|++||++.+..... ..+
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP 147 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccc
Confidence 3479999999999999999999988886 5568999999999887665 5789999999987642111 123
Q ss_pred ecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeeccc-------------------CcEEEEEEccCCCEE
Q 042260 75 DQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYESR-------------------AAVNTVVLHPNQTEL 134 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l 134 (174)
..|...|.+++|+|+ +..+++|+.|+.| +||+++..+...+..+ ..|.+++|+|++..|
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 568889999999995 5789999999999 9999998877666432 679999999999999
Q ss_pred EEeeCCCcEEEEeCCCCccee
Q 042260 135 ISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 135 ~s~~~d~~i~iwd~~~~~~~~ 155 (174)
++|+.||+|++||++++++..
T Consensus 227 asgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 227 ITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EEEETTCCEEEEETTTCCEEE
T ss_pred EEEECCCeEEEEECCCCcEEE
Confidence 999999999999999887654
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.90 E-value=1.3e-21 Score=151.70 Aligned_cols=167 Identities=17% Similarity=0.280 Sum_probs=120.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCce----eEEeecCCCCeEEEEEcCCCc-eEEE-e--cCCcEEEEEcCCCCCCCeEEee
Q 042260 4 PSVILATASYDKTIKFWEAKSGRC----YRTIQYPDSQVNRLEITPNKH-YLAA-A--GNPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~~-~--~d~~i~i~d~~~~~~~~~~~~~ 75 (174)
.+..+++++.|+.+++||..+++. +.....+...|..++|+|.+. ++++ + .|+.|++||++++. ....+.
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~--~~~~~~ 318 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--CLSAVD 318 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE--EEEEEE
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc--cceeec
Confidence 456899999999999999987653 455566788899999999643 4433 2 47899999998773 334443
Q ss_pred cCCCCEEEEEEeeCCCEEEEec--CCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGS--EDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
+...+.++.|+++++.+++++ .|+.|++||+++..++.++. |..+|.+++|+|+++.|++|+.|++|++||+....
T Consensus 319 -~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 319 -AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp -CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred -cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 446799999999999888754 79999999999988887775 67889999999999999999999999999998765
Q ss_pred ceeecC-cccceeEEEEEeecC
Q 042260 153 CSCELG-LQYGLRTFLFYHQDM 173 (174)
Q Consensus 153 ~~~~~~-~~~~~~~~~~~~~~~ 173 (174)
...+.+ .........|.|+.+
T Consensus 398 ~~~~~~~~~~~~~~~s~~~~gi 419 (420)
T 4gga_A 398 PARRREREKASAAKSSLIHQGI 419 (420)
T ss_dssp CC--------------------
T ss_pred ccchhhhccCCccccccCCCCC
Confidence 554432 333344445556543
No 105
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.89 E-value=1.1e-22 Score=156.96 Aligned_cols=151 Identities=17% Similarity=0.266 Sum_probs=112.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeE-----EeecCCCCeEEEEEcC--------CCceEEE-ecCCcEEEEEcCCCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYR-----TIQYPDSQVNRLEITP--------NKHYLAA-AGNPHIRLFDVNSSSPQ 69 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~~~~-~~d~~i~i~d~~~~~~~ 69 (174)
.+.+|++|+.|++|++||.++++... .+..|...|++++|+| ++.+|++ +.|+.+|+||++++ .
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~--~ 177 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE--G 177 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT--E
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC--c
Confidence 35679999999999999998886532 3456888999999987 5666665 57889999999765 3
Q ss_pred CeEEeecCCCCEEEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEee--------------------------cccCcE
Q 042260 70 PVMSYDQHTNNVMAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEY--------------------------ESRAAV 122 (174)
Q Consensus 70 ~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~--------------------------~~~~~v 122 (174)
+......|...+.+++|+|++ ++|++|+.|+.|++||+++....... .+...+
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 445556788999999999976 48999999999999999875432211 123457
Q ss_pred EEEEEc-cCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 123 NTVVLH-PNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 123 ~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
.++.|. |+++.|++++.|+++++||+...+....
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~ 292 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE 292 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC--------
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce
Confidence 778876 7899999999999999999987655433
No 106
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.89 E-value=2.6e-21 Score=150.76 Aligned_cols=149 Identities=22% Similarity=0.429 Sum_probs=125.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
+.+|++|+.||+|++||+.+++.+..+..|...|.++.+++ +.+++++.|+.|++||+.++ .....+..|...+.++
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~ 205 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCM 205 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET-TEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEE
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC-CEEEEEeCCCeEEEEECCcC--cEEEEECCCCCcEEEE
Confidence 45789999999999999999999999999999999999973 35556678899999999876 4456677899999999
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
.++ ++.+++|+.||.|++||+++..+...+ .+...|.++.+ +++.+++|+.||.|++||++++.+..++...
T Consensus 206 ~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 278 (445)
T 2ovr_B 206 HLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH 278 (445)
T ss_dssp EEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCC
T ss_pred Eec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCC
Confidence 984 678999999999999999987776665 45678898888 6788999999999999999988888776533
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.89 E-value=3.5e-21 Score=149.86 Aligned_cols=152 Identities=22% Similarity=0.400 Sum_probs=126.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
++..|++|+.|++|++||..+++.+..+..|...|.++.++ ...+++++.|+.|++||+.++ .....+..|...+.+
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~ 218 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLH 218 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC-SSEEEEEETTSCEEEEESSSC--CEEEEECCCCSCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC-CCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCcEEE
Confidence 45679999999999999999999999999999999999983 234455567899999999877 446667789999999
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeE---Ee-ecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ---ME-YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
++|+ +..+++|+.||.|++||+++.... .. ..+...|.++.+ +++.+++|+.||.|++||++++++...+..
T Consensus 219 l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 294 (435)
T 1p22_A 219 LRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294 (435)
T ss_dssp EECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC
Confidence 9996 569999999999999999876543 22 246678999998 778999999999999999999988877754
Q ss_pred ccc
Q 042260 160 QYG 162 (174)
Q Consensus 160 ~~~ 162 (174)
...
T Consensus 295 ~~~ 297 (435)
T 1p22_A 295 HKR 297 (435)
T ss_dssp CSS
T ss_pred CCC
Confidence 333
No 108
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=2.6e-21 Score=166.80 Aligned_cols=166 Identities=20% Similarity=0.322 Sum_probs=137.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC--CceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN--KHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.+|++|+.|++|++||+.+++.+..+..|...|.++.|+|+ +.+++ ++.|+.+++||++++ .....+..|...
T Consensus 668 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--ECRNTMFGHTNS 745 (1249)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--SEEEEECCCSSC
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--chhheecCCCCC
Confidence 5678999999999999999999999999999999999999984 34554 456889999999876 445667789999
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee--------------------------------------------
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-------------------------------------------- 116 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-------------------------------------------- 116 (174)
+.+++|+++++++++++.||.|++||++.......+
T Consensus 746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d 825 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825 (1249)
T ss_dssp EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 999999999999999999999999998765432211
Q ss_pred ------------cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEEEee
Q 042260 117 ------------ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 117 ------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 171 (174)
.+...|.+++|+|+++.+++++.|+.|++||+.++.+...+........-+-+++
T Consensus 826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892 (1249)
T ss_dssp TTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred ecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC
Confidence 2345688999999999999999999999999999988877765555444444444
No 109
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.89 E-value=1e-20 Score=151.65 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=128.8
Q ss_pred CcEEEEEeeCCCcEEEEECCCC--------ceeEEeecCCCCeEEEEEcCCCceEEEecC-----CcEEEEEcCCCCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSG--------RCYRTIQYPDSQVNRLEITPNKHYLAAAGN-----PHIRLFDVNSSSPQP 70 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~ 70 (174)
++.+|++|+.|++|++||+.++ +....+..+...|.+++|+|++.+++++++ +.+++|| .+ ..
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~--~~ 152 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SG--NS 152 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TC--CE
T ss_pred CCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CC--Cc
Confidence 6779999999999999999755 567777778889999999999988776643 3567776 33 34
Q ss_pred eEEeecCCCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeec-ccC---cEEEEEEccC-CCEEEEeeCCCcEE
Q 042260 71 VMSYDQHTNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYE-SRA---AVNTVVLHPN-QTELISGDQNGNIR 144 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~---~v~~~~~~~~-~~~l~s~~~d~~i~ 144 (174)
...+..|...+.+++|+++++ .+++++.|+.|++||++.......+. +.. .|.+++|+|+ ++.|++++.|+.|+
T Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 566778999999999999998 89999999999999999988877775 455 7999999999 99999999999999
Q ss_pred EEeCCCCcceeec
Q 042260 145 VWDLTANSCSCEL 157 (174)
Q Consensus 145 iwd~~~~~~~~~~ 157 (174)
+||+++++....+
T Consensus 233 vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 233 CFDGKSGEFLKYI 245 (615)
T ss_dssp EEETTTCCEEEEC
T ss_pred EEECCCCCEeEEe
Confidence 9999999888877
No 110
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=6.5e-21 Score=143.83 Aligned_cols=165 Identities=10% Similarity=0.092 Sum_probs=120.0
Q ss_pred CcEEEEEee--CCCcEEEEEC-CCCceeEEeecCCCCeEEEEEcC---CCceEEE-ecCCcEEEEEcCCCCCCCeEEeec
Q 042260 4 PSVILATAS--YDKTIKFWEA-KSGRCYRTIQYPDSQVNRLEITP---NKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s--~D~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
.++++.+++ .|++|++|++ .+|+.+.+...|...+..++|++ ++.++++ +.|+.|||||+.+++ .+.++..
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk--~l~tL~g 221 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ--LLKKMHI 221 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--EEEEEEC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--EEEEEcC
Confidence 355555633 6999999998 55888888888888888899988 5566665 679999999999874 4555554
Q ss_pred C---CCCEEEEEEeeCCCEE------------EEecCCCcEEEEeCCCCeeEEee------cccCcEEEEEEccCCCEEE
Q 042260 77 H---TNNVMAVGFQCDGNWM------------YSGSEDGTVKIWDLRAPVCQMEY------ESRAAVNTVVLHPNQTELI 135 (174)
Q Consensus 77 ~---~~~v~~~~~~~~~~~l------------~t~~~dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~ 135 (174)
| ...+.+++|+|+|+++ ++|+.|+++++||..+.++...+ .+...+.+..+ ++..++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lA 299 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAA 299 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEE
Confidence 3 3467788999999876 66889999999999988776543 12223333333 467899
Q ss_pred EeeCCCcEEEEeCCCCcceeecC-cccceeEEEEEeec
Q 042260 136 SGDQNGNIRVWDLTANSCSCELG-LQYGLRTFLFYHQD 172 (174)
Q Consensus 136 s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~ 172 (174)
+|+.|++|+|||++++++..+++ +...+.+.+-+|||
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD 337 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT 337 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence 99999999999999999999986 33445556667775
No 111
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.89 E-value=9.6e-21 Score=147.57 Aligned_cols=146 Identities=23% Similarity=0.507 Sum_probs=122.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
+..+++|+.|++|++||+++++.+..+..|...|.++.++ ...+++++.|+.+++||++++ .....+..|...+.++
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~ 325 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETG--NCIHTLTGHQSLTSGM 325 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTC--CEEEEECCCCSCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC-CCEEEEEeCCCeEEEEECCCC--CEEEEEcCCcccEEEE
Confidence 4568899999999999999999998888888889999882 234455567899999999876 4456677888888887
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.+ +++++++|+.||.|++||+++......+. +..+|.+++++ ++.|++|+.||.|++||+++++....+
T Consensus 326 ~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 326 EL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 76 47799999999999999999888777765 56789999995 589999999999999999999887766
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.8e-21 Score=149.30 Aligned_cols=162 Identities=11% Similarity=0.094 Sum_probs=129.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeE----EeecCCCCeEEEEEcCC---CceEEE-ecCCcEEEEEcCCCCCCCeEE-e
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYR----TIQYPDSQVNRLEITPN---KHYLAA-AGNPHIRLFDVNSSSPQPVMS-Y 74 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~~~-~~d~~i~i~d~~~~~~~~~~~-~ 74 (174)
++..|++|+.|+.+++|++.+++... .+..|...|.+++|+|+ +.++++ +.|+.|++||++++. .+.. .
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~ 237 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF--IVDKWL 237 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT--CEEEEC
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc--eeeeee
Confidence 46689999999999999998877554 66778889999999998 866654 568899999998764 3333 4
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--------------------------cCcEEEEEEc
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--------------------------RAAVNTVVLH 128 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--------------------------~~~v~~~~~~ 128 (174)
.+|...+.+++|+ ++++|++++.|+.|++||+++..+...+.. ...|.+++++
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 5789999999999 999999999999999999998876655532 2468999999
Q ss_pred cCCCEEEEee-CCCcEEEEeC--CCC---cceeecCcccceeEEEE
Q 042260 129 PNQTELISGD-QNGNIRVWDL--TAN---SCSCELGLQYGLRTFLF 168 (174)
Q Consensus 129 ~~~~~l~s~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~~~~~ 168 (174)
|+++.|++++ .|+.|++||+ ..+ .....+..+..+..+.|
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~ 362 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSA 362 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEe
Confidence 9999999988 8999999999 554 44555555544554444
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.88 E-value=1.3e-21 Score=146.68 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=121.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc---eeEEeecCCCCeEEEEEcCCCc-eEE-EecCCcEEEEEc-CCCCCCCeEEeec-
Q 042260 4 PSVILATASYDKTIKFWEAKSGR---CYRTIQYPDSQVNRLEITPNKH-YLA-AAGNPHIRLFDV-NSSSPQPVMSYDQ- 76 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~-~~~~~~~~~~~~~- 76 (174)
++.+|++++.|++|++||+.+++ .......+...|.+++|+|++. +++ ++.|+.|++||+ ..+. ...+..
T Consensus 22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~ 98 (342)
T 1yfq_A 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS---FQALTNN 98 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS---EEECBSC
T ss_pred CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc---eEecccc
Confidence 45679999999999999998877 3445557888999999999888 555 456889999999 7653 355667
Q ss_pred -CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC---------CeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260 77 -HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA---------PVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW 146 (174)
Q Consensus 77 -~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 146 (174)
|...+.+++|++ ++.+++++.|+.|++||++. ..+...+.+...|.+++|+|++ +++++.|+.|++|
T Consensus 99 ~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~ 175 (342)
T 1yfq_A 99 EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWF 175 (342)
T ss_dssp CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEE
T ss_pred CCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEE
Confidence 999999999999 99999999999999999987 6656666678899999999877 9999999999999
Q ss_pred eCCC-Ccc
Q 042260 147 DLTA-NSC 153 (174)
Q Consensus 147 d~~~-~~~ 153 (174)
|++. ...
T Consensus 176 d~~~~~~~ 183 (342)
T 1yfq_A 176 RLPLCEDD 183 (342)
T ss_dssp ESSCCTTC
T ss_pred ECCccccc
Confidence 9998 554
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-21 Score=154.81 Aligned_cols=158 Identities=13% Similarity=0.140 Sum_probs=123.7
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCC-----CeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCC-----Ce
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDS-----QVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQ-----PV 71 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~-----~~ 71 (174)
+++..||+++.||+|++||.++ ++..+. |.. .+.+++|+|++.+++++ .|+.|++||+.++... .+
T Consensus 95 PdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l 171 (588)
T 2j04_A 95 PIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFE 171 (588)
T ss_dssp SSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEE
T ss_pred CCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceee
Confidence 4677899999999999999654 555555 544 49999999999988765 6889999999876431 23
Q ss_pred EEe----ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE---Eee--cccCcEEEEEEccCCCEEEEeeCCCc
Q 042260 72 MSY----DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ---MEY--ESRAAVNTVVLHPNQTELISGDQNGN 142 (174)
Q Consensus 72 ~~~----~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~---~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~ 142 (174)
..+ .+|...|.+++|+|+| +++++.|+.|++||+...... .++ .+...|.+++|+ ++.|++++ +++
T Consensus 172 ~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t 246 (588)
T 2j04_A 172 SSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY 246 (588)
T ss_dssp EEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE
T ss_pred eeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe
Confidence 443 5677899999999999 888999999999999876632 333 355789999999 58888887 699
Q ss_pred EEEEeCCCCcc-eeecCcccceeEEEE
Q 042260 143 IRVWDLTANSC-SCELGLQYGLRTFLF 168 (174)
Q Consensus 143 i~iwd~~~~~~-~~~~~~~~~~~~~~~ 168 (174)
|++||+..+.. .....++..+....|
T Consensus 247 IkLWd~~~~~~~~~~~gh~~~V~~va~ 273 (588)
T 2j04_A 247 VHKIDLKNYSISSLKTGSLENFHIIPL 273 (588)
T ss_dssp EEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred EEEEECCCCeEEEEEcCCCceEEEEEe
Confidence 99999998877 666666666655544
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.88 E-value=9.6e-21 Score=140.47 Aligned_cols=144 Identities=19% Similarity=0.331 Sum_probs=115.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCce----eEEeecCCCCeEEEEEcCCCc-eEE--E-ecCCcEEEEEcCCCCCCCeEEee
Q 042260 4 PSVILATASYDKTIKFWEAKSGRC----YRTIQYPDSQVNRLEITPNKH-YLA--A-AGNPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~--~-~~d~~i~i~d~~~~~~~~~~~~~ 75 (174)
.+.+|++++.|++|++||+++++. ......+...|..+.+.|.+. ++. + +.++.+++||.+... .....
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~---~~~~~ 237 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---CLSAV 237 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC---EEEEE
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc---ccccc
Confidence 456799999999999999988764 233445667899999998654 322 2 246789999997653 22334
Q ss_pred cCCCCEEEEEEeeCCCEEEEe--cCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 76 QHTNNVMAVGFQCDGNWMYSG--SEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.+...+..+.+.++++.++++ +.|+.|++||+++.+++.++. |..+|.+++|+|+++.|++|+.||+|++||+..
T Consensus 238 ~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 238 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 567889999999999887764 489999999999988887775 678999999999999999999999999999975
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=4.5e-21 Score=144.47 Aligned_cols=147 Identities=22% Similarity=0.323 Sum_probs=123.1
Q ss_pred EEECCCCceeEEeecCCCCeEEEEEcCC---CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEE
Q 042260 19 FWEAKSGRCYRTIQYPDSQVNRLEITPN---KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMY 94 (174)
Q Consensus 19 vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 94 (174)
.|+....+.+..+..|...|.+++|+|+ +.++++ +.|+.|++||+.+........+..|...|.+++|++++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3445556667777889999999999998 466554 568899999998744344356778999999999999999999
Q ss_pred EecCCCcEEEEeCCCCeeEEeecccCcEEEEEE--ccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccceeE
Q 042260 95 SGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVL--HPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGLRT 165 (174)
Q Consensus 95 t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 165 (174)
+++.||.|++||+++........+..+|.+++| +|+++.|++++.||.|++||++++++...+..+.....
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYC 175 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEE
T ss_pred EEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceE
Confidence 999999999999999888877788899999999 89999999999999999999999888877765554433
No 117
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.88 E-value=1.3e-20 Score=143.99 Aligned_cols=149 Identities=19% Similarity=0.420 Sum_probs=122.7
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC---ceE-EEecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK---HYL-AAAGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
++.+|++++.|++|++||+.+++....+. +...+..+.+.+.+ .++ +++.++.+++||+++++ ....+..|..
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~ 187 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--CSHILQGHRQ 187 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC--CCEEECCCCS
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc--eeeeecCCCC
Confidence 45579999999999999999999888877 45678999998854 244 45578899999998763 4556778999
Q ss_pred CEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCe-eEEe----------------ecccCcEEEEEEccCCCEEEEeeCCC
Q 042260 80 NVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPV-CQME----------------YESRAAVNTVVLHPNQTELISGDQNG 141 (174)
Q Consensus 80 ~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~-~~~~----------------~~~~~~v~~~~~~~~~~~l~s~~~d~ 141 (174)
.+.+++|+++++ .+++++.||.|++||++... +... ..+...|.+++|+|+++.|++++.||
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 267 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267 (408)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence 999999999988 59999999999999998654 2222 23567899999999999999999999
Q ss_pred cEEEEeCCCCccee
Q 042260 142 NIRVWDLTANSCSC 155 (174)
Q Consensus 142 ~i~iwd~~~~~~~~ 155 (174)
.|++||++++....
T Consensus 268 ~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 268 RMRLWNSSNGENTL 281 (408)
T ss_dssp CEEEEETTTCCBCC
T ss_pred eEEEEECCCCccce
Confidence 99999999876543
No 118
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.88 E-value=2.3e-20 Score=144.72 Aligned_cols=165 Identities=20% Similarity=0.384 Sum_probs=133.4
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+++.+|++|+.|++|++||+++++.+..+..|...+.++.+++. .+++++.|+.+++||..... .....+..|...+.
T Consensus 157 pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVC 234 (420)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEE
T ss_pred CCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccc-eeeEEeccccccee
Confidence 45678999999999999999999999999999989998888642 33445678899999997653 34556788999999
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCee-----EEeecccCcEEEEEEccCCC-EEEE--eeCCCcEEEEeCCCCcce
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-----QMEYESRAAVNTVVLHPNQT-ELIS--GDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~-~l~s--~~~d~~i~iwd~~~~~~~ 154 (174)
.+.+.++++++++++.|+.+++||...... .....+...|.+++|+|.+. .+++ |+.|++|++||++++.+.
T Consensus 235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 999999999999999999999999976432 22235667899999999765 4444 457999999999999988
Q ss_pred eecCcccceeEEEEE
Q 042260 155 CELGLQYGLRTFLFY 169 (174)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (174)
..+.....+...++.
T Consensus 315 ~~~~~~~~v~~~~~~ 329 (420)
T 4gga_A 315 SAVDAHSQVCSILWS 329 (420)
T ss_dssp EEEECSSCEEEEEEE
T ss_pred eeeccccceeeeeec
Confidence 887766666665543
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.88 E-value=3.1e-21 Score=146.88 Aligned_cols=140 Identities=10% Similarity=0.130 Sum_probs=112.6
Q ss_pred eeCCCcEEEEECCCCc----------------eeEEeecCCCCeEEEEEcCCCceEEE-ecCCc-EEEEEcCCCCCCCeE
Q 042260 11 ASYDKTIKFWEAKSGR----------------CYRTIQYPDSQVNRLEITPNKHYLAA-AGNPH-IRLFDVNSSSPQPVM 72 (174)
Q Consensus 11 ~s~D~~v~vwd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~-i~i~d~~~~~~~~~~ 72 (174)
|+.||+|++||+++++ ++..+..|...|.+++|+|++.++++ +.|+. +++||++++ ..+.
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--~~~~ 232 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--VLVR 232 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC--CEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--cEEE
Confidence 7999999999999865 26778889999999999999987765 46887 999999877 3455
Q ss_pred Eee-c-CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE----------------------eec--ccCcEEEEE
Q 042260 73 SYD-Q-HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM----------------------EYE--SRAAVNTVV 126 (174)
Q Consensus 73 ~~~-~-~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~----------------------~~~--~~~~v~~~~ 126 (174)
.+. + |...|.+++|+|++++|++++.|+.|++||++...... .+. ...+...++
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA 312 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence 565 4 89999999999999999999999999999997542110 011 112236789
Q ss_pred EccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 127 LHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
|+|+++.|++++.||.+++|++..+.
T Consensus 313 ~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 313 WISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 99999999999999999999998644
No 120
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.87 E-value=3.7e-20 Score=148.47 Aligned_cols=146 Identities=10% Similarity=0.174 Sum_probs=115.0
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcE
Q 042260 24 SGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTV 102 (174)
Q Consensus 24 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v 102 (174)
+++.+..+. +...+.+++++ ...+++++. ++.+++||+..+.... ..+..|...+.+++|++++++|++++.||.|
T Consensus 436 ~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 512 (615)
T 1pgu_A 436 TGDIIKSVR-LNSPGSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKI 512 (615)
T ss_dssp TCCEEEEEE-CSSCEEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCceeeecc-cCCCceEEEEc-CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeE
Confidence 455555554 55678999998 333444556 8899999997753221 4456788999999999999999999999999
Q ss_pred EEEeCCCCeeEEeec--ccCcEEEEEEcc----------CCCEEEEeeCCCcEEEEeCCCC-cceeecCcccceeEEEEE
Q 042260 103 KIWDLRAPVCQMEYE--SRAAVNTVVLHP----------NQTELISGDQNGNIRVWDLTAN-SCSCELGLQYGLRTFLFY 169 (174)
Q Consensus 103 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~----------~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 169 (174)
++||+++......+. +...|.+++|+| +++.|++++.||.|++||++++ ++...+..+.....-+-+
T Consensus 513 ~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~ 592 (615)
T 1pgu_A 513 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 592 (615)
T ss_dssp EEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEE
T ss_pred EEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEE
Confidence 999999988877765 778999999999 9999999999999999999987 677776644454444555
Q ss_pred eec
Q 042260 170 HQD 172 (174)
Q Consensus 170 ~~~ 172 (174)
+++
T Consensus 593 s~~ 595 (615)
T 1pgu_A 593 ETP 595 (615)
T ss_dssp EET
T ss_pred cCC
Confidence 554
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.87 E-value=1e-19 Score=139.06 Aligned_cols=155 Identities=12% Similarity=0.169 Sum_probs=127.4
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+.++++++.|++|++||+++++.+..+..+. .+.+++|+|++..+ +++ .++.|++||+.+++ ....+..+ ..+.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~--~~~~~~~~-~~v~ 77 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATVPAG-SSPQ 77 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEEECS-SSEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe--EEEEEECC-CCcc
Confidence 4678999999999999999999998887664 58999999998765 444 68899999998764 33444444 4899
Q ss_pred EEEEeeCCCEE-EEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 83 AVGFQCDGNWM-YSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 83 ~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
+++|+++++++ ++++.++.|++||+.+......+.....+.+++|+|+++.+ ++++.|+.|++||++++++...+...
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 157 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence 99999999977 45667899999999998888777777889999999999977 67888999999999998877766544
Q ss_pred cce
Q 042260 161 YGL 163 (174)
Q Consensus 161 ~~~ 163 (174)
..+
T Consensus 158 ~~~ 160 (391)
T 1l0q_A 158 RSP 160 (391)
T ss_dssp SSE
T ss_pred CCc
Confidence 444
No 122
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.87 E-value=1.4e-19 Score=134.19 Aligned_cols=170 Identities=19% Similarity=0.342 Sum_probs=130.6
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCC-----------------------------------------CCeEEE
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPD-----------------------------------------SQVNRL 41 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-----------------------------------------~~v~~~ 41 (174)
+++.+|++|+.|++|++||+++++.+..+..|. ..+..+
T Consensus 77 ~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (318)
T 4ggc_A 77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 156 (318)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEE
Confidence 356789999999999999999887766554432 345566
Q ss_pred EEcCCCceEEE-ecCCcEEEEEcCCCCCC--CeEEeecCCCCEEEEEEeeCCC---EEEEecCCCcEEEEeCCCCeeEEe
Q 042260 42 EITPNKHYLAA-AGNPHIRLFDVNSSSPQ--PVMSYDQHTNNVMAVGFQCDGN---WMYSGSEDGTVKIWDLRAPVCQME 115 (174)
Q Consensus 42 ~~~~~~~~~~~-~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~---~l~t~~~dg~v~iwd~~~~~~~~~ 115 (174)
.+.+.+.++++ +.|+.+++||+++++.. .......+...+..+.+.+.+. .+++++.++.|++||.+.......
T Consensus 157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 157 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred EEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence 66776666554 56889999999876432 2344556778899999988655 345778899999999998887777
Q ss_pred ecccCcEEEEEEccCCCEEEEe--eCCCcEEEEeCCCCcceeecCcccceeEEEEEeec
Q 042260 116 YESRAAVNTVVLHPNQTELISG--DQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQD 172 (174)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
..+...+..+.++|+++.++++ +.|+.|++||++++++..++..+...+.-+-+||+
T Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 7788889999999999887764 47999999999999999988765566555666664
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.3e-20 Score=150.32 Aligned_cols=142 Identities=14% Similarity=0.117 Sum_probs=119.2
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCce-------eEEe----ecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCC-C
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRC-------YRTI----QYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQ-P 70 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~ 70 (174)
+++++|++|+.||+|++||+.++.. +.++ ..|...|.+++|+|++ +++++.|+.+++||+..+... .
T Consensus 139 PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~ 217 (588)
T 2j04_A 139 PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPV 217 (588)
T ss_dssp SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCC
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccc
Confidence 4678999999999999999998753 5666 3456789999999999 778888999999999876532 2
Q ss_pred eEEe-ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee-EEeecccCcEEEEEE--ccCCCEEEEeeCCCcEEEE
Q 042260 71 VMSY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC-QMEYESRAAVNTVVL--HPNQTELISGDQNGNIRVW 146 (174)
Q Consensus 71 ~~~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~i~iw 146 (174)
...+ ..|+..|.+++|+ ++.+++++ ++.|++||+..... ...+.+...+.+++| +|++..++++.+||+ ++|
T Consensus 218 ~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw 293 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL 293 (588)
T ss_dssp EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence 2334 4788999999998 68999987 69999999998877 454578889999999 999999999999999 999
Q ss_pred eCC
Q 042260 147 DLT 149 (174)
Q Consensus 147 d~~ 149 (174)
...
T Consensus 294 ~~d 296 (588)
T 2j04_A 294 LED 296 (588)
T ss_dssp ESS
T ss_pred eec
Confidence 986
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.85 E-value=6.3e-19 Score=134.64 Aligned_cols=154 Identities=10% Similarity=0.176 Sum_probs=125.8
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-cCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
.++++++.|++|++||+.+++.+..+..+. .+.+++|+|++..++ ++ .++.|++||+.+++ ....+. +...+.+
T Consensus 45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--~~~~~~-~~~~~~~ 120 (391)
T 1l0q_A 45 KVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VAGTVK-TGKSPLG 120 (391)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE-CSSSEEE
T ss_pred EEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe--EEEEEe-CCCCcce
Confidence 455888899999999999999988887665 799999999988654 44 46889999998763 333333 3457899
Q ss_pred EEEeeCCCEE-EEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 84 VGFQCDGNWM-YSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 84 ~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
++|+++++.+ ++++.|+.|++||+++......+.....+.+++|+|+++.+ ++++.++.|++||++++++...+....
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 200 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence 9999999977 78899999999999998888777777788999999999887 577789999999999988776665444
Q ss_pred ce
Q 042260 162 GL 163 (174)
Q Consensus 162 ~~ 163 (174)
.+
T Consensus 201 ~~ 202 (391)
T 1l0q_A 201 AP 202 (391)
T ss_dssp EE
T ss_pred Cc
Confidence 33
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.85 E-value=2.4e-19 Score=138.67 Aligned_cols=158 Identities=10% Similarity=0.111 Sum_probs=129.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEE-----eecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRT-----IQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
.+.++++++.|++|++||+.+++.... +..|...+.+++|++++.+++++ .++.+++||++++ .....+..|
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--~~~~~~~~~ 210 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL--AYKATVDLT 210 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--CEEEEEECS
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--eEEEEEcCC
Confidence 567889999999999999999988763 33566789999999988877665 6789999999876 344556678
Q ss_pred CCCEEEEEEeeCCCEE-EEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee--------CCCcEEEEeC
Q 042260 78 TNNVMAVGFQCDGNWM-YSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD--------QNGNIRVWDL 148 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--------~d~~i~iwd~ 148 (174)
...+.+++|+++++.+ ++++.|+.|++||+++......+.....+.+++++|+++.+++++ .|+.|++||+
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 8899999999999977 566689999999999988887777777899999999999998887 5889999999
Q ss_pred CCCcceeecCcccce
Q 042260 149 TANSCSCELGLQYGL 163 (174)
Q Consensus 149 ~~~~~~~~~~~~~~~ 163 (174)
++++..........+
T Consensus 291 ~~~~~~~~~~~~~~~ 305 (433)
T 3bws_A 291 DKEKLIDTIGPPGNK 305 (433)
T ss_dssp TTTEEEEEEEEEECE
T ss_pred CCCcEEeeccCCCCc
Confidence 988776655443333
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.83 E-value=1.6e-18 Score=134.07 Aligned_cols=159 Identities=12% Similarity=0.141 Sum_probs=129.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
++.++++++.|++|++||+++++.+..+..+...+..++|+|++..+ +++ .++.|++||+++++ ....+.. ...+
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~-~~~~ 256 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--EIRKTDK-IGLP 256 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEECCC-CSEE
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--EEEEecC-CCCc
Confidence 56789999999999999999999998888888889999999988765 444 57899999998763 3333333 4568
Q ss_pred EEEEEeeCCCEEEEec--------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCCCc
Q 042260 82 MAVGFQCDGNWMYSGS--------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~--------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~ 152 (174)
.+++|+++++.+++++ .|+.|++||+++........+...+..++|+|+++.+ ++++.|+.|++||+++++
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 9999999999999887 5889999999988877776666788999999999755 566889999999999888
Q ss_pred ceeecCcccceeE
Q 042260 153 CSCELGLQYGLRT 165 (174)
Q Consensus 153 ~~~~~~~~~~~~~ 165 (174)
....+.....+..
T Consensus 337 ~~~~~~~~~~~~~ 349 (433)
T 3bws_A 337 VQKSIPVFDKPNT 349 (433)
T ss_dssp EEEEEECSSSEEE
T ss_pred EEEEecCCCCCCe
Confidence 7766655444443
No 127
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.3e-19 Score=140.31 Aligned_cols=144 Identities=16% Similarity=0.192 Sum_probs=109.9
Q ss_pred cEEEEEeeCCCcEEEEECCCC----------ceeEEe-----ecCCCCeEEEEEcCCCceEE----Ee-cCCcEEEEEcC
Q 042260 5 SVILATASYDKTIKFWEAKSG----------RCYRTI-----QYPDSQVNRLEITPNKHYLA----AA-GNPHIRLFDVN 64 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~~~~----~~-~d~~i~i~d~~ 64 (174)
+.++++++.|+ +++|+...- ..+... ..+...|.+++|+|++.+++ ++ .|+.|++||++
T Consensus 48 ~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~ 126 (434)
T 2oit_A 48 YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVR 126 (434)
T ss_dssp TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHH
T ss_pred CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcc
Confidence 45678888887 899874311 011110 12345699999999998877 43 47789999986
Q ss_pred CC-----CC-CC---eEEeecCCCCEEEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEe-ecccCcEEEEEEccCCCE
Q 042260 65 SS-----SP-QP---VMSYDQHTNNVMAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQME-YESRAAVNTVVLHPNQTE 133 (174)
Q Consensus 65 ~~-----~~-~~---~~~~~~~~~~v~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 133 (174)
+. +. .+ ...+.+|...|.+++|+|+ +++|++++.||.|++||+++...... ..+...|.+++|+|+++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~ 206 (434)
T 2oit_A 127 TFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQ 206 (434)
T ss_dssp HHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSC
T ss_pred ccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCE
Confidence 53 11 11 2334568899999999997 88999999999999999998755433 345778999999999999
Q ss_pred EEEeeCCCcEEEEeCC
Q 042260 134 LISGDQNGNIRVWDLT 149 (174)
Q Consensus 134 l~s~~~d~~i~iwd~~ 149 (174)
|++|+.||+|++||++
T Consensus 207 lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 207 LAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEEETTSCEEEECTT
T ss_pred EEEEcCCCcEEEEccC
Confidence 9999999999999998
No 128
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=3.2e-18 Score=133.81 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=109.6
Q ss_pred CcEEEE----EeeCCCcEEEEECCCC--------ce---eEEeecCCCCeEEEEEcCC-CceEE-EecCCcEEEEEcCCC
Q 042260 4 PSVILA----TASYDKTIKFWEAKSG--------RC---YRTIQYPDSQVNRLEITPN-KHYLA-AAGNPHIRLFDVNSS 66 (174)
Q Consensus 4 ~~~~l~----s~s~D~~v~vwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~~~-~~~d~~i~i~d~~~~ 66 (174)
++.+|+ +|+.|++|++||++++ +. +..+..|...|.+++|+|+ +.+++ ++.|+.+++||++++
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 355677 8999999999998765 22 3344457788999999997 56555 567899999999876
Q ss_pred CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--------ccCcEEEEEEccCCCEEEE-e
Q 042260 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--------SRAAVNTVVLHPNQTELIS-G 137 (174)
Q Consensus 67 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s-~ 137 (174)
........|...+.+++|+++|++|++|+.||.|++||++. .....+. +...|.++.|+++..++++ .
T Consensus 183 --~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 183 --VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp --EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred --cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 33444556888999999999999999999999999999983 3232221 1137899999998887754 3
Q ss_pred eCCC------cEEEEeCCCC
Q 042260 138 DQNG------NIRVWDLTAN 151 (174)
Q Consensus 138 ~~d~------~i~iwd~~~~ 151 (174)
..|| .+++||++..
T Consensus 260 ~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 260 AADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ETTCCSSSCCEEEEEECCCT
T ss_pred cCCCccCCCCceEEEEeccC
Confidence 3443 3999999865
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.74 E-value=1.6e-15 Score=117.80 Aligned_cols=135 Identities=11% Similarity=0.112 Sum_probs=105.6
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cC---CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCC
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GN---PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDG 90 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d---~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 90 (174)
++|++||+.+ .....+..+...+..++|+|++..++.+ .+ ..|++||+.+++. ..+..+...+.+++|+|+|
T Consensus 159 ~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~---~~l~~~~~~~~~~~~spdg 234 (415)
T 2hqs_A 159 YELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVASFPRHNGAPAFSPDG 234 (415)
T ss_dssp EEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EEEECCSSCEEEEEECTTS
T ss_pred ceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE---EEeecCCCcccCEEEcCCC
Confidence 7999999974 5566677777889999999999877654 34 3799999987643 2345677889999999999
Q ss_pred CEEE-EecCCCc--EEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCcc
Q 042260 91 NWMY-SGSEDGT--VKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTANSC 153 (174)
Q Consensus 91 ~~l~-t~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~ 153 (174)
+.|+ +++.|+. |++||+++........+...+.+++|+|+++.|++++. ++ .|.+||+..+..
T Consensus 235 ~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 235 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred CEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 9877 6766655 99999988766544456678999999999999888775 45 577789887653
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.73 E-value=1.7e-15 Score=117.64 Aligned_cols=148 Identities=13% Similarity=0.085 Sum_probs=113.7
Q ss_pred CCcEEEEEeeCCC---cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-Ee-cC--CcEEEEEcCCCCCCCeEEee
Q 042260 3 QPSVILATASYDK---TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AA-GN--PHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 3 ~~~~~l~s~s~D~---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~d--~~i~i~d~~~~~~~~~~~~~ 75 (174)
+++..|++++.|+ +|++||+++++.. .+..+...+..++|+|++..++ ++ .+ ..|++||+.+++. ..+.
T Consensus 188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~---~~l~ 263 (415)
T 2hqs_A 188 PDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI---RQVT 263 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EECC
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE---EeCc
Confidence 3566788888885 9999999998875 4555667899999999998665 43 33 3489999987642 3455
Q ss_pred cCCCCEEEEEEeeCCCEEEEecC-CC--cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC---CcEEEEeCC
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSE-DG--TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN---GNIRVWDLT 149 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~iwd~~ 149 (174)
.|...+..++|+|+|+.|+.++. ++ .|.+||+.+........+...+.+++|+|+++.|++++.+ ..|++||+.
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence 67788999999999999888876 44 6777798876644333445678899999999999887764 589999999
Q ss_pred CCcce
Q 042260 150 ANSCS 154 (174)
Q Consensus 150 ~~~~~ 154 (174)
++.+.
T Consensus 344 ~~~~~ 348 (415)
T 2hqs_A 344 TGGVQ 348 (415)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 87653
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.70 E-value=1.1e-15 Score=114.20 Aligned_cols=151 Identities=13% Similarity=0.249 Sum_probs=108.1
Q ss_pred CCCCcEEEEEeeCCCcEEEEECC-CCc--eeEEeecCCCCeEEEEEcCCCceEEEe-cC-CcEEEEEcC--CCCCCCeEE
Q 042260 1 MAQPSVILATASYDKTIKFWEAK-SGR--CYRTIQYPDSQVNRLEITPNKHYLAAA-GN-PHIRLFDVN--SSSPQPVMS 73 (174)
Q Consensus 1 ~~~~~~~l~s~s~D~~v~vwd~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d-~~i~i~d~~--~~~~~~~~~ 73 (174)
|.....++++++.|+.|++||+. +++ .+..+ .+...+..++|+|++..++.+ .+ +.+++|++. ++.......
T Consensus 1 ~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 1 MSLKQTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp -CCEEEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CCceEEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 44445566666889999999985 342 23333 355678889999998865544 43 789999997 443333333
Q ss_pred eecCCCCEEEEEEeeCCCEEEEec-CCCcEEEEeC---CCCeeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeC
Q 042260 74 YDQHTNNVMAVGFQCDGNWMYSGS-EDGTVKIWDL---RAPVCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDL 148 (174)
Q Consensus 74 ~~~~~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~ 148 (174)
+..+ ..+..++|++++++++.++ .++.|.+||+ ........+.....+.+++|+|+++.+++++ .++.|++||+
T Consensus 80 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 80 SALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp EECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred cccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence 4433 3788999999999776555 5889999999 4334444555556789999999999888776 7899999999
Q ss_pred CC-Ccc
Q 042260 149 TA-NSC 153 (174)
Q Consensus 149 ~~-~~~ 153 (174)
.+ ++.
T Consensus 159 ~~~~~~ 164 (343)
T 1ri6_A 159 SDDGHL 164 (343)
T ss_dssp CTTSCE
T ss_pred cCCCce
Confidence 87 543
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.70 E-value=9.5e-15 Score=109.03 Aligned_cols=148 Identities=11% Similarity=0.144 Sum_probs=114.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.+.++++++.+++|++||.++++....+..+...+ .++|+|++..+ +++ .++.+.+||+.+++.. ......+....
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~ 86 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQEGQSSM 86 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEEEECSSCC
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEecccCCCCc
Confidence 45678999999999999999999988887665566 99999998744 444 3678999999877531 33344454544
Q ss_pred EEEEEeeCCCEEEEecCCC---cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe-eCCCc-EEEEeCCCCcc
Q 042260 82 MAVGFQCDGNWMYSGSEDG---TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG-DQNGN-IRVWDLTANSC 153 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg---~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~-i~iwd~~~~~~ 153 (174)
.+++|++++++++++..++ .|.+||+.+......+.....+..++|+|+++.++++ ..++. |.+|++.....
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~ 163 (331)
T 3u4y_A 87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV 163 (331)
T ss_dssp CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC
T ss_pred cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCc
Confidence 4499999999999655553 8999999988887777777778999999999866554 55578 99999986443
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.69 E-value=1.4e-15 Score=113.29 Aligned_cols=150 Identities=9% Similarity=0.122 Sum_probs=115.4
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCC--CeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeec---CC
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDS--QVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQ---HT 78 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~---~~ 78 (174)
.++++++.+++|++||..+++.+..+..... .+..++|+|++..+ ++. .++.|.+||+.+++......... +.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 5789999999999999999998888875432 47889999998644 443 46789999998764322222111 11
Q ss_pred CCEEEEEEeeCCCEEEEec------------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEE
Q 042260 79 NNVMAVGFQCDGNWMYSGS------------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVW 146 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 146 (174)
..+..++|++++++++.++ .++.|.+||+.+......+.....+..++|+|+++.|+++ ++.|.+|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 2566789999999888886 5799999999988777666666678889999999988877 6789999
Q ss_pred eCCCCcceeec
Q 042260 147 DLTANSCSCEL 157 (174)
Q Consensus 147 d~~~~~~~~~~ 157 (174)
|+.+++....+
T Consensus 160 d~~~~~~~~~~ 170 (337)
T 1pby_B 160 DPEAGTLVEDK 170 (337)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCcEeeee
Confidence 99988766544
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.67 E-value=3.6e-16 Score=128.21 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=113.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCC---CeEEEEEcCCCceEEEecC----------CcEEEEEcCCCCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDS---QVNRLEITPNKHYLAAAGN----------PHIRLFDVNSSSPQP 70 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~d----------~~i~i~d~~~~~~~~ 70 (174)
++.++++ +.|++|++||+.+++....+..+.. .+..++|+|++..++.+.+ +.+.+||+.+++...
T Consensus 27 dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 105 (723)
T 1xfd_A 27 DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS 105 (723)
T ss_dssp SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE
T ss_pred CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEe
Confidence 4555655 7899999999999988777765543 3899999999997766532 678899998875422
Q ss_pred eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCc------------------EEEEEEccCC
Q 042260 71 VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAA------------------VNTVVLHPNQ 131 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~------------------v~~~~~~~~~ 131 (174)
+.....|...+..++|+|+|+.|+.++. +.|++||+.+......... ... +.+++|+|++
T Consensus 106 l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg 184 (723)
T 1xfd_A 106 LDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG 184 (723)
T ss_dssp CCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred ccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC
Confidence 2222334445888999999999999886 7999999987655433322 222 3789999999
Q ss_pred CEEEEeeCCC----------------------------------cEEEEeCCCCcceeecC
Q 042260 132 TELISGDQNG----------------------------------NIRVWDLTANSCSCELG 158 (174)
Q Consensus 132 ~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~~~~ 158 (174)
+.|++++.|+ .|++||+.++.+..++.
T Consensus 185 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 185 TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 9999877543 79999999887654443
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.66 E-value=1.7e-14 Score=107.31 Aligned_cols=144 Identities=8% Similarity=0.111 Sum_probs=110.5
Q ss_pred CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCe---------------------
Q 042260 13 YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPV--------------------- 71 (174)
Q Consensus 13 ~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--------------------- 71 (174)
.++.|++||+.+++.+..+.. ...+..+.|+|++..++.+ ++.+.+||+.+++....
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred cCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEee
Confidence 579999999999888877765 3457788999998866655 67899999865421100
Q ss_pred -------------------------------EEe------------ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCC
Q 042260 72 -------------------------------MSY------------DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR 108 (174)
Q Consensus 72 -------------------------------~~~------------~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~ 108 (174)
..+ ..+...+..++|++++++++++ ++.|.+||+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 000 1112234568999999998888 7899999999
Q ss_pred CCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 109 APVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
+.+....+.....+.+++|+|+++.|++++.++.|++||+++++...++..+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 8887776666667889999999999988888999999999998887776544
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.66 E-value=4.5e-14 Score=105.92 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=117.3
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCC---------eEEEEEcCCCceEEEe---cCCcEEEEEcCCCCCCCeE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQ---------VNRLEITPNKHYLAAA---GNPHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~ 72 (174)
+.++++...++.|.+||.++++.+..+..+... +..+.|+|++..++.+ .++.+.+||..+++ ...
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~--~~~ 178 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK--LKT 178 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE--EEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc--eEE
Confidence 346777888899999999999988887764322 6889999988755443 26679999998763 333
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-----cCcEEEEEEccCCCEEEEeeC-CCcEEEE
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-----RAAVNTVVLHPNQTELISGDQ-NGNIRVW 146 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~-d~~i~iw 146 (174)
.+..+...+..++|+++++.++.++.++.+.+||+.+......+.. ...+..++++|+++.++.++. ++.|.+|
T Consensus 179 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 258 (353)
T 3vgz_A 179 AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVV 258 (353)
T ss_dssp EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEE
Confidence 3443445578899999999999999999999999998877665542 345788999999998776654 5899999
Q ss_pred eCCCCcceeecC
Q 042260 147 DLTANSCSCELG 158 (174)
Q Consensus 147 d~~~~~~~~~~~ 158 (174)
|+.+++....+.
T Consensus 259 d~~~~~~~~~~~ 270 (353)
T 3vgz_A 259 DTRNGNILAKVA 270 (353)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCcEEEEEE
Confidence 999888776554
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.66 E-value=5.2e-15 Score=121.73 Aligned_cols=135 Identities=8% Similarity=0.053 Sum_probs=104.4
Q ss_pred CCcEEEEEeeC-CC-----cEEEEECCCCceeEEeecCCC------------------------CeEEEEEcCCCceEEE
Q 042260 3 QPSVILATASY-DK-----TIKFWEAKSGRCYRTIQYPDS------------------------QVNRLEITPNKHYLAA 52 (174)
Q Consensus 3 ~~~~~l~s~s~-D~-----~v~vwd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~ 52 (174)
.+++.|++++. |+ +|++||+.+++....+..+.. .+..++|+|++..++.
T Consensus 46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~ 125 (741)
T 2ecf_A 46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLF 125 (741)
T ss_dssp TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEE
T ss_pred cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEE
Confidence 35677888888 88 899999999987766654322 2778999999998887
Q ss_pred ecCCcEEEEEcCCC---CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc-Cc-------
Q 042260 53 AGNPHIRLFDVNSS---SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-AA------- 121 (174)
Q Consensus 53 ~~d~~i~i~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~~------- 121 (174)
+.++.+++||+.++ ... .+..+...+..++|+|+|++|+.++. +.|++||+.+.......... ..
T Consensus 126 ~~~~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~ 201 (741)
T 2ecf_A 126 PLGGELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAE 201 (741)
T ss_dssp EETTEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCC
T ss_pred EeCCcEEEEECCCCCcceEE---EcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccc
Confidence 76789999999876 332 23456778999999999999999875 58999999887654432222 21
Q ss_pred ---------EEEEEEccCCCEEEEeeCCC
Q 042260 122 ---------VNTVVLHPNQTELISGDQNG 141 (174)
Q Consensus 122 ---------v~~~~~~~~~~~l~s~~~d~ 141 (174)
+..++|+|+++.|++++.|+
T Consensus 202 ~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 202 FVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp HHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred eeeeeccccccceEECCCCCEEEEEEEcC
Confidence 47799999999999887665
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.66 E-value=4.2e-14 Score=113.45 Aligned_cols=147 Identities=12% Similarity=0.165 Sum_probs=117.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEc--CCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDV--NSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~--~~~~~~~~~~~~~~~~~ 80 (174)
.+.++++++.|++|.+||..+++.+..+..... +..++++|++.++++ +.++.|++||+ .+. ..+..+. +...
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~-~g~~ 223 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIK-IGIE 223 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEE-CCSE
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEe-cCCC
Confidence 467899999999999999999999998875433 889999999887654 56788999999 544 3344444 3456
Q ss_pred EEEEEEee----CCCEEEEecC-CCcEEEEeCCCCeeEEeecc------------cCcEEEEEEccCCCE-EEEeeCCCc
Q 042260 81 VMAVGFQC----DGNWMYSGSE-DGTVKIWDLRAPVCQMEYES------------RAAVNTVVLHPNQTE-LISGDQNGN 142 (174)
Q Consensus 81 v~~~~~~~----~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~-l~s~~~d~~ 142 (174)
...++|+| +|+++++++. ++.|.+||..+.+++..+.. ...+..+.++|++.. +++...++.
T Consensus 224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~ 303 (543)
T 1nir_A 224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 303 (543)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCe
Confidence 89999999 9999998884 89999999998877665532 236889999997765 556778999
Q ss_pred EEEEeCCCCcce
Q 042260 143 IRVWDLTANSCS 154 (174)
Q Consensus 143 i~iwd~~~~~~~ 154 (174)
|.+||+.+....
T Consensus 304 i~vvd~~~~~~l 315 (543)
T 1nir_A 304 VLLVNYKDIDNL 315 (543)
T ss_dssp EEEEECTTSSSC
T ss_pred EEEEEecCCCcc
Confidence 999999876543
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.66 E-value=7.6e-15 Score=106.93 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=103.2
Q ss_pred EeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCC-CCCCCeEEeecC-CCCEEEEEEe
Q 042260 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS-SSPQPVMSYDQH-TNNVMAVGFQ 87 (174)
Q Consensus 10 s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~-~~~v~~~~~~ 87 (174)
+++.|++|++||+.+++..... .+...+.++.|+|++..++.+.++.+++||+.+ ++.. .....+ ...+.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW-QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE--KVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE-EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCceeeec-cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce--EeccccccccccceEEC
Confidence 4578999999999988766444 466789999999999988888889999999987 6432 223333 3678889999
Q ss_pred eCCCEEEEec--CCCcEEEEeC--CCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260 88 CDGNWMYSGS--EDGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA 150 (174)
Q Consensus 88 ~~~~~l~t~~--~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~ 150 (174)
++++++++++ .++..+||.+ .... ...+.....+..++|+|+++.|+ +++.++.+++|++..
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~ 160 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI 160 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence 9999999998 3455555554 4443 23344445689999999999877 777899999999753
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.65 E-value=1.7e-14 Score=115.71 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=117.9
Q ss_pred CCcEEEEEeeCCCcEEEEEC--CCCceeEEeecCCCCeEEEEEcC----CCceEEEe--cCCcEEEEEcCCCCCCCeEEe
Q 042260 3 QPSVILATASYDKTIKFWEA--KSGRCYRTIQYPDSQVNRLEITP----NKHYLAAA--GNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~ 74 (174)
.++++|++++.|++|++||+ .+++.+..+.. ...+..++|+| ++.+++++ .++.+.+||..+.+. +...
T Consensus 188 pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~--~~~i 264 (543)
T 1nir_A 188 ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--KQIV 264 (543)
T ss_dssp TTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE--EEEE
T ss_pred CCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc--ceee
Confidence 46778999999999999999 88888888874 44678999999 88876654 478999999877643 3333
Q ss_pred ec----------C-CCCEEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEE--eecccCcEEEEEEccCCCEEEEee-C
Q 042260 75 DQ----------H-TNNVMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQM--EYESRAAVNTVVLHPNQTELISGD-Q 139 (174)
Q Consensus 75 ~~----------~-~~~v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~-~ 139 (174)
.. | ...+..+.+++++. ++++...++.|.+||........ .+.....+.+++|+|+++++++++ .
T Consensus 265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~ 344 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN 344 (543)
T ss_dssp ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG
T ss_pred cccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC
Confidence 22 2 23688999998654 67788899999999998754322 445556678899999999876554 5
Q ss_pred CCcEEEEeCCCCcceeecC
Q 042260 140 NGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 140 d~~i~iwd~~~~~~~~~~~ 158 (174)
+++|.+||..++++...+.
T Consensus 345 ~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 345 SNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp GTEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEECCCCeEEEeec
Confidence 8899999999998876654
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.63 E-value=3.2e-14 Score=103.56 Aligned_cols=152 Identities=12% Similarity=0.088 Sum_probs=106.5
Q ss_pred CcEEEEEeeCCCcEEEEECCC-CceeEEeecC-CCCeEEEEEcCCCceEEEec---CCcEEEEEcCCCCCCCeEEeecCC
Q 042260 4 PSVILATASYDKTIKFWEAKS-GRCYRTIQYP-DSQVNRLEITPNKHYLAAAG---NPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
++..|++++ ++.|++||+.+ ++.......+ ...+..+.|+|++..++.+. ++..++|.++..... ...+.. .
T Consensus 52 dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~ 128 (297)
T 2ojh_A 52 DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-N 128 (297)
T ss_dssp TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-S
T ss_pred CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-C
Confidence 456777776 88999999998 8776655544 35678899999998776654 235566655332212 222223 3
Q ss_pred CCEEEEEEeeCCCEEE-EecCCCcEEEEeC--CCCeeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCC-CCcc
Q 042260 79 NNVMAVGFQCDGNWMY-SGSEDGTVKIWDL--RAPVCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLT-ANSC 153 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~ 153 (174)
..+..++|+++++.++ +++.++.+++|++ ..........+...+.+++|+|+++.|+.++ .++.+++|++. ....
T Consensus 129 ~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~ 208 (297)
T 2ojh_A 129 LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS 208 (297)
T ss_dssp SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC
Confidence 4488899999999877 7888999999995 3444433345567899999999999887665 58999999987 4444
Q ss_pred eeecC
Q 042260 154 SCELG 158 (174)
Q Consensus 154 ~~~~~ 158 (174)
...+.
T Consensus 209 ~~~~~ 213 (297)
T 2ojh_A 209 VERIT 213 (297)
T ss_dssp EEECC
T ss_pred cEEEe
Confidence 44443
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.63 E-value=7.5e-15 Score=109.93 Aligned_cols=151 Identities=11% Similarity=0.158 Sum_probs=112.1
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceE-EEe-cCCcEEEEEcCCCCCCCeEEeecC--
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYL-AAA-GNPHIRLFDVNSSSPQPVMSYDQH-- 77 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~~~~~~~~~~~~~-- 77 (174)
..+.++++++.+++|++||+.+++.+..+..+. ..+..++|+|++..+ ++. .++.|.+||+.+++. .......
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~--~~~~~~~~~ 86 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--TFHANLSSV 86 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEESCCS
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE--EEEEEcccc
Confidence 457789999999999999999999888877543 247789999998754 333 567899999987632 2222221
Q ss_pred ----CCCEEEEEEeeCCCEEEEecCC------------CcEEEEeCCCC---eeEEeecccCcEEEEEEccCCCEEEEee
Q 042260 78 ----TNNVMAVGFQCDGNWMYSGSED------------GTVKIWDLRAP---VCQMEYESRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 78 ----~~~v~~~~~~~~~~~l~t~~~d------------g~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 138 (174)
...+..++|+++|+++++++.+ +.|.+||+.+. .....+.....+.+++|+|+++ +++++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~ 165 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG 165 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc
Confidence 1236788999999999998865 89999999863 2233444555688999999999 66554
Q ss_pred CCCcEEEEeCCCCcceeecC
Q 042260 139 QNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 139 ~d~~i~iwd~~~~~~~~~~~ 158 (174)
. .|.+||+.+++....+.
T Consensus 166 ~--~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 166 P--DIYKMDVKTGKYTVALP 183 (349)
T ss_dssp S--SEEEECTTTCCEEEEEC
T ss_pred C--cEEEEeCCCCceecccc
Confidence 3 49999999887765554
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.62 E-value=2e-13 Score=102.42 Aligned_cols=157 Identities=11% Similarity=0.114 Sum_probs=114.8
Q ss_pred EEEEe-eCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEe--ecCCCCEE
Q 042260 7 ILATA-SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSY--DQHTNNVM 82 (174)
Q Consensus 7 ~l~s~-s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~ 82 (174)
+++++ +.++.|.+||.++++.+..+..+...+..+.|+|++..++ +..++.+.+||..+++....... ..+...+.
T Consensus 155 l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 234 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFI 234 (353)
T ss_dssp EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEE
T ss_pred EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccc
Confidence 44444 4588999999999998888875555678899999887554 45678899999987643222211 12455678
Q ss_pred EEEEeeCCCEEEEec-CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCCCcceeecCcc
Q 042260 83 AVGFQCDGNWMYSGS-EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
.+++++++++++.++ .++.|.+||+.+.+....+....+ ..++|+|+++.++.+. .++.|.+||..+++....+...
T Consensus 235 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 313 (353)
T 3vgz_A 235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP 313 (353)
T ss_dssp EEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence 899999999766655 459999999998877666654443 5689999999766554 6899999999998877666554
Q ss_pred ccee
Q 042260 161 YGLR 164 (174)
Q Consensus 161 ~~~~ 164 (174)
..+.
T Consensus 314 ~~~~ 317 (353)
T 3vgz_A 314 THPN 317 (353)
T ss_dssp SEEE
T ss_pred CCCC
Confidence 4443
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.61 E-value=3.6e-13 Score=100.44 Aligned_cols=155 Identities=10% Similarity=0.138 Sum_probs=110.2
Q ss_pred CcE-EEEEeeCCCcEEEEECCCCce-eEEeecCCCCeEEEEEcCCCceEEEecCC----cEEEEEcCCCCCCCeEEeecC
Q 042260 4 PSV-ILATASYDKTIKFWEAKSGRC-YRTIQYPDSQVNRLEITPNKHYLAAAGNP----HIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 4 ~~~-~l~s~s~D~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~ 77 (174)
++. +++++..++.|++||.++++. ...+..+..+..+++|+|++..++++.+. .+++||+.+++. ..... .
T Consensus 50 dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~--~~~~~-~ 126 (331)
T 3u4y_A 50 DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF--ISTIP-I 126 (331)
T ss_dssp SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE--EEEEE-C
T ss_pred CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe--EEEEE-C
Confidence 344 555666699999999999987 66666665555559999999877765433 799999987643 33333 3
Q ss_pred CCCEEEEEEeeCCCEE-EEecCCCc-EEEEeCCCCeeE-----EeecccCcEEEEEEccCCCEEEE-eeCCCcEEEEeCC
Q 042260 78 TNNVMAVGFQCDGNWM-YSGSEDGT-VKIWDLRAPVCQ-----MEYESRAAVNTVVLHPNQTELIS-GDQNGNIRVWDLT 149 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l-~t~~~dg~-v~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~iwd~~ 149 (174)
......++|+|+|+++ +++..++. +.+|++...... ........+..++|+|+++.++. +..++.|++||++
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 3557899999999854 55566688 999998753221 22234456899999999996654 4468899999999
Q ss_pred CCcc---eeecCccc
Q 042260 150 ANSC---SCELGLQY 161 (174)
Q Consensus 150 ~~~~---~~~~~~~~ 161 (174)
+++. ...++...
T Consensus 207 ~~~~~~~~~~~~~~~ 221 (331)
T 3u4y_A 207 NPENITLLNAVGTNN 221 (331)
T ss_dssp STTSCEEEEEEECSS
T ss_pred CCcccceeeeccCCC
Confidence 8887 65554433
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.59 E-value=7.4e-13 Score=98.67 Aligned_cols=145 Identities=12% Similarity=0.216 Sum_probs=99.3
Q ss_pred cEEEEEee-CCCcEEEEECCC-CceeE----Eeec-CCCCeEEEEEcCCCceE-EEe-cCCcEEEEEcCC--CCCCCeEE
Q 042260 5 SVILATAS-YDKTIKFWEAKS-GRCYR----TIQY-PDSQVNRLEITPNKHYL-AAA-GNPHIRLFDVNS--SSPQPVMS 73 (174)
Q Consensus 5 ~~~l~s~s-~D~~v~vwd~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~~-~~~-~d~~i~i~d~~~--~~~~~~~~ 73 (174)
+..+++++ .|+.|++||+.+ ++... .... ....+..++|+|++..+ +++ .++.+++|++.. +.......
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~ 219 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 219 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence 43444444 899999999987 65432 2232 23468889999998855 444 577899999954 32221222
Q ss_pred eec---C---CCCEEEEEEeeCCCEEE-EecCCCcEEEEeCC----CCeeEEeecccCcEEEEEEccCCCEEEEee-CCC
Q 042260 74 YDQ---H---TNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLR----APVCQMEYESRAAVNTVVLHPNQTELISGD-QNG 141 (174)
Q Consensus 74 ~~~---~---~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~ 141 (174)
... . ...+..++|++++++++ ++..++.|.+||+. .......+.....+..++|+|+++.|++++ .++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 299 (343)
T 1ri6_A 220 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH 299 (343)
T ss_dssp EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCC
Confidence 211 1 23566899999998776 56689999999998 233334444444588999999999888777 589
Q ss_pred cEEEEeCC
Q 042260 142 NIRVWDLT 149 (174)
Q Consensus 142 ~i~iwd~~ 149 (174)
.|.+|++.
T Consensus 300 ~v~v~~~d 307 (343)
T 1ri6_A 300 HISVYEIV 307 (343)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEc
Confidence 99999655
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.58 E-value=3.9e-13 Score=100.53 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=105.7
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCC------CCeEEEEEcCCCceEEEec-------------CCcEEEEEcCCC
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPD------SQVNRLEITPNKHYLAAAG-------------NPHIRLFDVNSS 66 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~-------------d~~i~i~d~~~~ 66 (174)
.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++..++.+. ++.+.+||+.++
T Consensus 56 ~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 56 TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred EEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence 456777789999999999998887776432 2267899999988766553 378999999774
Q ss_pred CCC-CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------------------------
Q 042260 67 SPQ-PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-------------------------- 119 (174)
Q Consensus 67 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------------------------- 119 (174)
+.. ...... +...+.+++|+++++ ++.++. .|.+||+.+.+....+...
T Consensus 136 ~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 136 LEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp GGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred cccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 322 222233 334688889999999 555544 4999999876655443221
Q ss_pred -------------------------------------------CcEEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 120 -------------------------------------------AAVNTVVLHP-NQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 120 -------------------------------------------~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
..+..++++| +++.++++ ++.|.+||+++++...
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence 1345677789 99988887 7899999999887765
Q ss_pred ecCcc
Q 042260 156 ELGLQ 160 (174)
Q Consensus 156 ~~~~~ 160 (174)
.+...
T Consensus 290 ~~~~~ 294 (349)
T 1jmx_B 290 AANLD 294 (349)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 55433
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=117.96 Aligned_cols=132 Identities=9% Similarity=0.131 Sum_probs=94.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCC---CeEEEEEcCCCceEEEec----------CCcEEEEEcCCCCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDS---QVNRLEITPNKHYLAAAG----------NPHIRLFDVNSSSPQP 70 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~ 70 (174)
++.+++++ .|++|++||+.+++....+..+.. .+..++|+|++..++.+. ++.+++||+.+++...
T Consensus 26 dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~ 104 (719)
T 1z68_A 26 GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR 104 (719)
T ss_dssp SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence 45555554 699999999999988766654432 388999999999776543 4789999998764310
Q ss_pred eEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cc-cCcE-----------------EEEEEccCC
Q 042260 71 VMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ES-RAAV-----------------NTVVLHPNQ 131 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~-~~~v-----------------~~~~~~~~~ 131 (174)
...+ ...+..++|+|+|+.|+.+. ++.|++||+.+....... .. ...+ .+++|+|++
T Consensus 105 ~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG 180 (719)
T 1z68_A 105 GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG 180 (719)
T ss_dssp SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS
T ss_pred ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC
Confidence 0111 24578899999999999885 779999999876543221 11 1112 489999999
Q ss_pred CEEEEeeCC
Q 042260 132 TELISGDQN 140 (174)
Q Consensus 132 ~~l~s~~~d 140 (174)
+.|++++.|
T Consensus 181 ~~la~~~~d 189 (719)
T 1z68_A 181 KFLAYAEFN 189 (719)
T ss_dssp SEEEEEEEE
T ss_pred CEEEEEEEC
Confidence 999988755
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.55 E-value=1.3e-13 Score=110.86 Aligned_cols=140 Identities=9% Similarity=0.040 Sum_probs=104.7
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cC----CcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GN----PHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d----~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
.++++++.|+ +.+||+.+++.......+. ....|+|+|..++.+ .+ ..|++||+.+++.. .+..|...
T Consensus 124 ~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~---~l~~~~~~ 196 (582)
T 3o4h_A 124 VVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR---VFDSGEGS 196 (582)
T ss_dssp EEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE---EECCSSCE
T ss_pred EEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce---EeecCCCc
Confidence 3556666555 5599999887655544332 788999999988743 33 56899999877543 34567788
Q ss_pred EEEEEEeeCCCEEEEecCCC--cEEEEeCCCCeeEEeecccCcEEEEE--------EccCCCEEEEeeCCCcEEEEeCCC
Q 042260 81 VMAVGFQCDGNWMYSGSEDG--TVKIWDLRAPVCQMEYESRAAVNTVV--------LHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
+...+|+|+|+.|+++..++ .|++||+.+........+...+..++ |+|++..+++++.|+++++|++
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-- 274 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-- 274 (582)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence 99999999999999888888 89999998876652223333444445 9999988889999999999999
Q ss_pred Ccce
Q 042260 151 NSCS 154 (174)
Q Consensus 151 ~~~~ 154 (174)
+++.
T Consensus 275 g~~~ 278 (582)
T 3o4h_A 275 GERV 278 (582)
T ss_dssp TEEE
T ss_pred CCee
Confidence 5443
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.55 E-value=6.6e-14 Score=115.14 Aligned_cols=148 Identities=10% Similarity=0.064 Sum_probs=110.0
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc--eeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCC--
Q 042260 4 PSVILATASYDKTIKFWEAKSGR--CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTN-- 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-- 79 (174)
+++.|++++. ++|++||+.+++ ....+..+...+..+.|+|++..++.+.++.|++||+.+++...+ ...+..
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~--~~~~~~~~ 195 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL--TADGSTTI 195 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC--CCCCCSSE
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe--ccCCccce
Confidence 5667777775 899999999873 344455566779999999999988877788999999977532211 111222
Q ss_pred --------------CEEEEEEeeCCCEEEEecCCC---------------------------------cEEEEeCCC-Ce
Q 042260 80 --------------NVMAVGFQCDGNWMYSGSEDG---------------------------------TVKIWDLRA-PV 111 (174)
Q Consensus 80 --------------~v~~~~~~~~~~~l~t~~~dg---------------------------------~v~iwd~~~-~~ 111 (174)
.+..+.|+|+|++|++++.|+ .|.+||+.+ ..
T Consensus 196 ~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 275 (741)
T 2ecf_A 196 GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ 275 (741)
T ss_dssp EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC
T ss_pred eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc
Confidence 146789999999999987765 789999987 66
Q ss_pred eEEee---cccCcEEEEEEccCCCEEEEeeC-----CCcEEEEeCCCCccee
Q 042260 112 CQMEY---ESRAAVNTVVLHPNQTELISGDQ-----NGNIRVWDLTANSCSC 155 (174)
Q Consensus 112 ~~~~~---~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~ 155 (174)
..... .+...+..++| |+++.|+.++. +..|++||+.++++..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 276 TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV 326 (741)
T ss_dssp CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence 54332 24567899999 99999886653 5679999999887553
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.54 E-value=2.8e-13 Score=110.93 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=107.2
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCC-----CCCCCeEEeecCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNS-----SSPQPVMSYDQHTN 79 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~ 79 (174)
+.++++ .|+++++||+.+++..... .+...+..++|+|++..++.+.++.|++||+.+ ++...+. ..+..
T Consensus 93 ~~~~~~--~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~--~~~~~ 167 (706)
T 2z3z_A 93 GLVVLF--TQGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVT--IDGTE 167 (706)
T ss_dssp TEEEEE--ETTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESC--SCCBT
T ss_pred CeEEEE--ECCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEec--cCCCC
Confidence 444444 3599999999988765443 345568889999999988888889999999987 5432211 12222
Q ss_pred C--------------EEEEEEeeCCCEEEEec---------------------------------CCCcEEEEeCCCCee
Q 042260 80 N--------------VMAVGFQCDGNWMYSGS---------------------------------EDGTVKIWDLRAPVC 112 (174)
Q Consensus 80 ~--------------v~~~~~~~~~~~l~t~~---------------------------------~dg~v~iwd~~~~~~ 112 (174)
. +.++.|+|+|++|++++ .+..|.+||+.+...
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 2 47899999999999987 457899999998775
Q ss_pred EEee---cccCcEEEEEEccCCCEEEEeeCCC-----cEEEEeCCCC
Q 042260 113 QMEY---ESRAAVNTVVLHPNQTELISGDQNG-----NIRVWDLTAN 151 (174)
Q Consensus 113 ~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~ 151 (174)
.... .+...+..++|+|+++.|++++.++ .|++||+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 4433 2345689999999999999887765 8999999987
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.53 E-value=2.1e-12 Score=97.10 Aligned_cols=151 Identities=12% Similarity=0.165 Sum_probs=102.0
Q ss_pred CcEEEEEeeCCCcEEEEECC-CCcee--EEeecC-CCCeEEEEEcCCCceEEE-e-cCCcEEEEEcCC--CCCCCeEEee
Q 042260 4 PSVILATASYDKTIKFWEAK-SGRCY--RTIQYP-DSQVNRLEITPNKHYLAA-A-GNPHIRLFDVNS--SSPQPVMSYD 75 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~-~~~~~--~~~~~~-~~~v~~~~~~~~~~~~~~-~-~d~~i~i~d~~~--~~~~~~~~~~ 75 (174)
++.++++...++.|++||+. +++.. ..+..+ ......++|+|++.+++. . .++.+++|++.. ++........
T Consensus 151 dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 230 (347)
T 3hfq_A 151 DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK 230 (347)
T ss_dssp TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee
Confidence 44577778889999999998 55432 222222 335788999999985443 3 567899999874 3222222222
Q ss_pred cCC------CCEEEEEEeeCCCEE-EEecCCCcEEEEeCCC---CeeEEeecc-cCcEEEEEEccCCCEEEEeeC-CCcE
Q 042260 76 QHT------NNVMAVGFQCDGNWM-YSGSEDGTVKIWDLRA---PVCQMEYES-RAAVNTVVLHPNQTELISGDQ-NGNI 143 (174)
Q Consensus 76 ~~~------~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~~---~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-d~~i 143 (174)
... ..+..++|+|+|+++ ++...++.|.+||+.. ......+.. ...+..++|+|+++.|++++. ++.|
T Consensus 231 ~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 310 (347)
T 3hfq_A 231 TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNA 310 (347)
T ss_dssp SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEE
T ss_pred ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcE
Confidence 222 348889999999977 5666789999999872 233333332 445789999999998887775 4899
Q ss_pred EEEeC--CCCcce
Q 042260 144 RVWDL--TANSCS 154 (174)
Q Consensus 144 ~iwd~--~~~~~~ 154 (174)
.+|++ ++++..
T Consensus 311 ~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 311 TLYARDLTSGKLS 323 (347)
T ss_dssp EEEEECTTTCCEE
T ss_pred EEEEEeCCCCeEE
Confidence 99955 445433
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.52 E-value=1.3e-13 Score=113.07 Aligned_cols=150 Identities=10% Similarity=0.063 Sum_probs=108.2
Q ss_pred CCcEEEEEeeCC---------CcEEEEECCCCceeEEeec---CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCC
Q 042260 3 QPSVILATASYD---------KTIKFWEAKSGRCYRTIQY---PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQP 70 (174)
Q Consensus 3 ~~~~~l~s~s~D---------~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 70 (174)
.+++.|++++.+ +.+++||+.+++. ..+.. +...+..++|+|++..++.+.++.|++||+.+++...
T Consensus 70 pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~ 148 (723)
T 1xfd_A 70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR 148 (723)
T ss_dssp TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE
T ss_pred CCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEE
Confidence 356678888764 7788999998876 23322 2334788999999998887777899999998764332
Q ss_pred eEEeecCCC------------------CEEEEEEeeCCCEEEEecCCC--------------------------------
Q 042260 71 VMSYDQHTN------------------NVMAVGFQCDGNWMYSGSEDG-------------------------------- 100 (174)
Q Consensus 71 ~~~~~~~~~------------------~v~~~~~~~~~~~l~t~~~dg-------------------------------- 100 (174)
+ ...+.. .+..++|+|+|+.|++++.|+
T Consensus 149 ~--~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 226 (723)
T 1xfd_A 149 V--VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP 226 (723)
T ss_dssp E--ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred E--ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence 2 222222 237899999999999987553
Q ss_pred --cEEEEeCCCCeeEEeecc-------cCcEEEEEEccCCCEEEEeeC----CCcEEEEeCCCCccee
Q 042260 101 --TVKIWDLRAPVCQMEYES-------RAAVNTVVLHPNQTELISGDQ----NGNIRVWDLTANSCSC 155 (174)
Q Consensus 101 --~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~ 155 (174)
.|++||+.+......+.. ...+..++|+|+++.+++.+. +..|++||+.++++..
T Consensus 227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 294 (723)
T 1xfd_A 227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK 294 (723)
T ss_dssp EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence 799999987764333332 456889999999998876543 3579999999887543
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.52 E-value=1.4e-13 Score=112.81 Aligned_cols=154 Identities=8% Similarity=0.116 Sum_probs=108.7
Q ss_pred CcEEEEEeeCCCcEEEEECCC-----CceeEEeecCCCC--------------eEEEEEcCCCceEEEec----------
Q 042260 4 PSVILATASYDKTIKFWEAKS-----GRCYRTIQYPDSQ--------------VNRLEITPNKHYLAAAG---------- 54 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~~---------- 54 (174)
+++.|+.+ .|+.|++||+.+ ++.......+... +..+.|+|++..++.+.
T Consensus 131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~ 209 (706)
T 2z3z_A 131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP 209 (706)
T ss_dssp TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence 45567774 689999999998 7765544333322 47899999998776542
Q ss_pred ------------------------CCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCC-----cEEEE
Q 042260 55 ------------------------NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG-----TVKIW 105 (174)
Q Consensus 55 ------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg-----~v~iw 105 (174)
+..+++||+.+++...+.....|...+..++|+|+|+.|++++.++ .|++|
T Consensus 210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence 2468999998764322221124566789999999999999887765 89999
Q ss_pred eCCCC-eeEEeec--ccC---cEEEEEEcc--CCCEEEEeeCCCcEEEEeCC-CCcceeecC
Q 042260 106 DLRAP-VCQMEYE--SRA---AVNTVVLHP--NQTELISGDQNGNIRVWDLT-ANSCSCELG 158 (174)
Q Consensus 106 d~~~~-~~~~~~~--~~~---~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~ 158 (174)
|+.+. ....... ... .+..++|+| ++++++++..|+.+++|++. ++....++.
T Consensus 290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~ 351 (706)
T 2z3z_A 290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT 351 (706)
T ss_dssp ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence 99887 4333221 111 246789999 99999999899999999887 455444443
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.51 E-value=3.4e-12 Score=95.98 Aligned_cols=147 Identities=14% Similarity=0.201 Sum_probs=97.0
Q ss_pred CcEEEEEee-CCCcEEEEECC-CCc--eeEEeecC---------CCCeEEEEEcCCCceEEEe-cCCcEEEEEcC-CCCC
Q 042260 4 PSVILATAS-YDKTIKFWEAK-SGR--CYRTIQYP---------DSQVNRLEITPNKHYLAAA-GNPHIRLFDVN-SSSP 68 (174)
Q Consensus 4 ~~~~l~s~s-~D~~v~vwd~~-~~~--~~~~~~~~---------~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~-~~~~ 68 (174)
++..|++++ .++++++||+. ++. .+..+... ...+..++|+|++.++++. .++.+++|++. .+..
T Consensus 96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 96 ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence 345555655 78999999985 333 23333221 1247889999998855554 46789999998 3332
Q ss_pred CCeEEeecC-CCCEEEEEEeeCCCEEE-EecCCCcEEEEeCCC--CeeE--Eeecc-c------CcEEEEEEccCCCEEE
Q 042260 69 QPVMSYDQH-TNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRA--PVCQ--MEYES-R------AAVNTVVLHPNQTELI 135 (174)
Q Consensus 69 ~~~~~~~~~-~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~--~~~~--~~~~~-~------~~v~~~~~~~~~~~l~ 135 (174)
........+ ......++|+|+|++++ ++..++.+.+|++.. .... ..... . ..+..++|+|+++.|+
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 222222222 23677899999999554 467789999999874 3321 11111 1 4588999999999874
Q ss_pred -EeeCCCcEEEEeCCC
Q 042260 136 -SGDQNGNIRVWDLTA 150 (174)
Q Consensus 136 -s~~~d~~i~iwd~~~ 150 (174)
+...++.|.+||+..
T Consensus 256 v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEEETTTEEEEEEECG
T ss_pred EEeCCCCEEEEEEECC
Confidence 555688999999973
No 155
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.50 E-value=6.5e-13 Score=113.52 Aligned_cols=143 Identities=13% Similarity=0.166 Sum_probs=110.7
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCC-CeEEEEEcCCCceEEEe-cCCcEE-EEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDS-QVNRLEITPNKHYLAAA-GNPHIR-LFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~-~d~~i~-i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++..|+.++ ++.+++|+..+++... +..+.. .+..+.|+ ++..++.+ .+..+. +||+..+.. ..+..|...
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~---~~l~~~~~~ 380 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA---EKFEENLGN 380 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE---EECCCCCCS
T ss_pred CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc---eEecCCccc
Confidence 455666766 7899999998876543 444555 78899999 87766554 444566 778876532 223367788
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCC----------cEEEEeCC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNG----------NIRVWDLT 149 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~----------~i~iwd~~ 149 (174)
+..++|+|+|++|++++.++.|++||+.+....... .+...+.+++|+|+++.|++++.++ .|++||+.
T Consensus 381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 999999999999999999999999999987766555 5566789999999999998877644 89999999
Q ss_pred CCc
Q 042260 150 ANS 152 (174)
Q Consensus 150 ~~~ 152 (174)
.++
T Consensus 461 ~g~ 463 (1045)
T 1k32_A 461 GRK 463 (1045)
T ss_dssp TTE
T ss_pred CCc
Confidence 876
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.48 E-value=8.6e-12 Score=94.31 Aligned_cols=148 Identities=11% Similarity=0.166 Sum_probs=99.6
Q ss_pred EEEEeeCCCcEEEEECCCCce------e------EEee-cCCCCeEEEEEcCCCceEEE-e-cCCcEEEEEcCCCCCCCe
Q 042260 7 ILATASYDKTIKFWEAKSGRC------Y------RTIQ-YPDSQVNRLEITPNKHYLAA-A-GNPHIRLFDVNSSSPQPV 71 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~------~------~~~~-~~~~~v~~~~~~~~~~~~~~-~-~d~~i~i~d~~~~~~~~~ 71 (174)
+++++..++.|++|++..... + .... ........++|+|++.+++. . .++.+.+||+.++.....
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 556666689999998765431 1 1222 23455788999999986544 4 478899999986533222
Q ss_pred EEee---cCCCCEEEEEEeeCCCEEEEecC--CCcEEEEeCC--CCe--eEEeecccCcEEEEEEccCCCEEEEee-CCC
Q 042260 72 MSYD---QHTNNVMAVGFQCDGNWMYSGSE--DGTVKIWDLR--APV--CQMEYESRAAVNTVVLHPNQTELISGD-QNG 141 (174)
Q Consensus 72 ~~~~---~~~~~v~~~~~~~~~~~l~t~~~--dg~v~iwd~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~ 141 (174)
.... .+......++|+|+|++++.+.. ++.|.+|++. ... ....+.....+..++|+|+++.|++++ .++
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCC
Confidence 2222 22345679999999998866555 4899999985 223 233333345678999999999888877 578
Q ss_pred cEEEEeCC--CCcce
Q 042260 142 NIRVWDLT--ANSCS 154 (174)
Q Consensus 142 ~i~iwd~~--~~~~~ 154 (174)
.|.+|++. +++..
T Consensus 329 ~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 329 VIQIFERDQATGLLT 343 (361)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred CEEEEEEECCCCcEe
Confidence 89996554 45433
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.48 E-value=2e-12 Score=110.49 Aligned_cols=144 Identities=8% Similarity=0.098 Sum_probs=112.5
Q ss_pred CcEEEEEeeCCCcEE-EEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 4 PSVILATASYDKTIK-FWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~-vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
++..|+.++.+..+. +||+.+++... +..+...+..++|+|++..++. +.++.+++||+.+++. ......|...+
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~--~~~~~~~~~~v 423 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--TVIERSREAMI 423 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCC
T ss_pred CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce--EEeccCCCCCc
Confidence 456777888888888 99988776543 3356677999999999987765 4567899999987743 33344678888
Q ss_pred EEEEEeeCCCEEEEecCCC----------cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 82 MAVGFQCDGNWMYSGSEDG----------TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg----------~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
..++|+|+|+++++++.++ .|++||+.+........+...+..++|+|+++.|+.++.++..+.|+...
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 9999999999998887654 89999999877443334566788999999999999999888888887653
No 158
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=1.9e-11 Score=90.09 Aligned_cols=152 Identities=11% Similarity=0.038 Sum_probs=117.2
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC-CCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH-TNN 80 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~ 80 (174)
.++++|++++.|+.|.+||.++|+.+..+..+. ..+.++.+.|++.+++ +.++.+..||. +++ .+..+..+ ...
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~--~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGR--ELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSC--EEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCC--EEEEEcCCCCcc
Confidence 467899999999999999999999998888664 4688899999999888 55777999998 553 34444443 246
Q ss_pred EEEEEEeeCCCEEEEecC-CCcEEEEeCCCCeeEEeecc-------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 81 VMAVGFQCDGNWMYSGSE-DGTVKIWDLRAPVCQMEYES-------RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
+.++.+.++|+.+++.+. ++.+..+|.. .+.+..+.. ......+.+.++++.+++...++.|..||.+ ++
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 778889999999999887 7788888864 444433321 1234456788999999999999999999998 88
Q ss_pred ceeecCcc
Q 042260 153 CSCELGLQ 160 (174)
Q Consensus 153 ~~~~~~~~ 160 (174)
.++++..+
T Consensus 157 ~~w~~~~~ 164 (276)
T 3no2_A 157 LLNSVKLS 164 (276)
T ss_dssp EEEEEECS
T ss_pred EEEEEECC
Confidence 88777543
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.41 E-value=5.1e-11 Score=90.58 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=96.5
Q ss_pred CCCcEEEEECC-CCceeEEee----cCCCCeEEEEEcCCCceEEEe--cCCcEEEEEcC-CCCCCCeEEee--cCCCCEE
Q 042260 13 YDKTIKFWEAK-SGRCYRTIQ----YPDSQVNRLEITPNKHYLAAA--GNPHIRLFDVN-SSSPQPVMSYD--QHTNNVM 82 (174)
Q Consensus 13 ~D~~v~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~--~d~~i~i~d~~-~~~~~~~~~~~--~~~~~v~ 82 (174)
.++++++|++. +|+....+. .+...+..++|+|++..++.+ +++.|++||+. +++........ .+.....
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 69999999987 466544433 134568999999999866554 46789999997 55433222232 2346688
Q ss_pred EEEEeeCCCEEEEecC-CCcEEEEeCC--CCeeEE------eeccc----C-------cEEEEE-EccCCCEEEEeeCC-
Q 042260 83 AVGFQCDGNWMYSGSE-DGTVKIWDLR--APVCQM------EYESR----A-------AVNTVV-LHPNQTELISGDQN- 140 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~-dg~v~iwd~~--~~~~~~------~~~~~----~-------~v~~~~-~~~~~~~l~s~~~d- 140 (174)
.++|+|+|++++.++. ++.|.+|++. +..... .+... . .+..++ |+|+++.|+++..+
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999998877664 7899999765 333221 11111 2 488999 99999988766542
Q ss_pred C-----cEEEEeCC-CCc
Q 042260 141 G-----NIRVWDLT-ANS 152 (174)
Q Consensus 141 ~-----~i~iwd~~-~~~ 152 (174)
. .|.+|++. +++
T Consensus 277 ~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp STTSCCEEEEEEECTTSC
T ss_pred CCCCCCeEEEEEECCCCC
Confidence 2 89999996 444
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.41 E-value=4.6e-11 Score=90.31 Aligned_cols=143 Identities=15% Similarity=0.266 Sum_probs=95.4
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEe----ec----------CCCCeEEEEEcCCCceEE-Ee-cCCcEEEEEcCCCCC--
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTI----QY----------PDSQVNRLEITPNKHYLA-AA-GNPHIRLFDVNSSSP-- 68 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~----~~----------~~~~v~~~~~~~~~~~~~-~~-~d~~i~i~d~~~~~~-- 68 (174)
++++...++++.+|++.....+..+ .. +...+..++|+|++..++ +. +++.+++|++.....
T Consensus 112 l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~ 191 (361)
T 3scy_A 112 IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD 191 (361)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc
Confidence 4455557899999998754332111 11 112357899999998554 33 467899999876532
Q ss_pred --C-Ce------EEeecCCCCEEEEEEeeCCCEEEEec-CCCcEEEEeCCCCeeE--Eeec----ccCcEEEEEEccCCC
Q 042260 69 --Q-PV------MSYDQHTNNVMAVGFQCDGNWMYSGS-EDGTVKIWDLRAPVCQ--MEYE----SRAAVNTVVLHPNQT 132 (174)
Q Consensus 69 --~-~~------~~~~~~~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~--~~~~----~~~~v~~~~~~~~~~ 132 (174)
. .. .....+......++|+|+|++++.++ .++.|.+||+...... .... ....+..++|+|+++
T Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~ 271 (361)
T 3scy_A 192 NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK 271 (361)
T ss_dssp TCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS
T ss_pred cccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC
Confidence 1 11 11122345678899999999876666 6899999999865432 2121 123468999999999
Q ss_pred EEEEeeC--CCcEEEEeCC
Q 042260 133 ELISGDQ--NGNIRVWDLT 149 (174)
Q Consensus 133 ~l~s~~~--d~~i~iwd~~ 149 (174)
.|+++.. ++.|.+|++.
T Consensus 272 ~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 272 YLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEEEECSSSCEEEEEEEC
T ss_pred EEEEECCCCCCEEEEEEEc
Confidence 8876655 4889999996
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.40 E-value=6.9e-13 Score=108.89 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=103.7
Q ss_pred CcEEEEEeeC---------CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEe
Q 042260 4 PSVILATASY---------DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 4 ~~~~l~s~s~---------D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 74 (174)
+++.|+.++. |++|++||+.+++.+..... ...+..++|+|+|..++.+.++.|++||+.+++...+ ..
T Consensus 70 Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l-~~ 147 (719)
T 1z68_A 70 DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQI-TF 147 (719)
T ss_dssp TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEEC-CC
T ss_pred CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEE-ec
Confidence 5667777766 78999999999876321111 2357889999999988887889999999987643221 11
Q ss_pred ecCCCCE-----------------EEEEEeeCCCEEEEecCCC----------------------------------cEE
Q 042260 75 DQHTNNV-----------------MAVGFQCDGNWMYSGSEDG----------------------------------TVK 103 (174)
Q Consensus 75 ~~~~~~v-----------------~~~~~~~~~~~l~t~~~dg----------------------------------~v~ 103 (174)
.++...+ .+++|+|+|+.|++++.|. .|+
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 2232222 4799999999999987652 788
Q ss_pred EEeCCCCeeE--Eee-------cccCcEEEEEEccCCCEEEEeeCC----CcEEEEe----CCCCcce
Q 042260 104 IWDLRAPVCQ--MEY-------ESRAAVNTVVLHPNQTELISGDQN----GNIRVWD----LTANSCS 154 (174)
Q Consensus 104 iwd~~~~~~~--~~~-------~~~~~v~~~~~~~~~~~l~s~~~d----~~i~iwd----~~~~~~~ 154 (174)
+||+.+.... ..+ .+...+..++|+|++..+++.... ..|.+|| +.++++.
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 9999876542 111 234568999999998766664322 2488899 7665543
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.39 E-value=5.9e-12 Score=101.18 Aligned_cols=144 Identities=10% Similarity=0.056 Sum_probs=95.3
Q ss_pred CcEEEEEeeC-CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec----CCcEEEEEcCC--CCCCCeEEeec
Q 042260 4 PSVILATASY-DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG----NPHIRLFDVNS--SSPQPVMSYDQ 76 (174)
Q Consensus 4 ~~~~l~s~s~-D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~--~~~~~~~~~~~ 76 (174)
+++.||.++. |++++||++.+++..+....+...+....|+|+ .+++++. +...++|.+.. ..... .+..
T Consensus 32 DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~ 108 (582)
T 3o4h_A 32 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEA 108 (582)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTT
T ss_pred CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc--cccC
Confidence 4566777776 999999998766554433333357889999998 6665443 34567776644 22221 2222
Q ss_pred CCCCEEEEEEeeCCC--EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC----CcEEEEeCCC
Q 042260 77 HTNNVMAVGFQCDGN--WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN----GNIRVWDLTA 150 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~--~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~iwd~~~ 150 (174)
. ......+|+++|+ .+++++.+ .+.+||+.+........... .+++|+|+|+.|++++.+ +.|++||+.+
T Consensus 109 ~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~ 184 (582)
T 3o4h_A 109 V-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS 184 (582)
T ss_dssp S-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred C-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence 2 2234567888775 45555555 45599998876554433333 889999999999987776 7799999998
Q ss_pred Ccce
Q 042260 151 NSCS 154 (174)
Q Consensus 151 ~~~~ 154 (174)
+...
T Consensus 185 g~~~ 188 (582)
T 3o4h_A 185 GGLR 188 (582)
T ss_dssp CCCE
T ss_pred CCce
Confidence 7654
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.38 E-value=1.1e-11 Score=102.48 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=94.9
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecCCCC-----eEEEEEcCCCceEEEecC----------CcEEEEEcCCCC
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQ-----VNRLEITPNKHYLAAAGN----------PHIRLFDVNSSS 67 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~d----------~~i~i~d~~~~~ 67 (174)
+++.+++++ |++|++||+.++++...+..+... .....|+|++..++.+.+ +.+.+||+.+++
T Consensus 26 ~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~ 103 (740)
T 4a5s_A 26 SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ 103 (740)
T ss_dssp SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc
Confidence 356778776 999999999999987766655322 244789999987765543 456799998875
Q ss_pred CCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE-eeccc-CcE-----------------EEEEEc
Q 042260 68 PQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM-EYESR-AAV-----------------NTVVLH 128 (174)
Q Consensus 68 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-~~~~~-~~v-----------------~~~~~~ 128 (174)
... +..+...+...+|+|+|+.||.+. |+.|++||+.+..... +.... ..+ ..+.|+
T Consensus 104 ~~~---l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS 179 (740)
T 4a5s_A 104 LIT---EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS 179 (740)
T ss_dssp ECC---SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred EEE---cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEEC
Confidence 433 335667899999999999999884 6799999997755332 22111 112 348899
Q ss_pred cCCCEEEEeeC
Q 042260 129 PNQTELISGDQ 139 (174)
Q Consensus 129 ~~~~~l~s~~~ 139 (174)
|+++.|+.++.
T Consensus 180 pDg~~la~~~~ 190 (740)
T 4a5s_A 180 PNGTFLAYAQF 190 (740)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 99999987653
No 164
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=3.3e-11 Score=92.75 Aligned_cols=136 Identities=11% Similarity=0.023 Sum_probs=99.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc-----------eeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeE
Q 042260 4 PSVILATASYDKTIKFWEAKSGR-----------CYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 72 (174)
...++++|+.|+ +++|+++... ....+. ... |..++| ++..++.+.++.+++||.++.. ...
T Consensus 48 ~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~--~~~ 120 (388)
T 1xip_A 48 SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVSTRNALYSLDLEELS--EFR 120 (388)
T ss_dssp TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEEESSEEEEEESSSTT--CEE
T ss_pred CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhh--ccC
Confidence 345788888885 6779865433 112233 344 999999 6666666688899999997754 223
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
....+...+..+.+.+. .++.++.||.+.+||+....... ....|.+++|+|+| ++.|..||++++|+.....
T Consensus 121 ~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 121 TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence 34456677777766543 38889999999999998765432 35689999999999 7789999999999888776
Q ss_pred c
Q 042260 153 C 153 (174)
Q Consensus 153 ~ 153 (174)
+
T Consensus 194 ~ 194 (388)
T 1xip_A 194 M 194 (388)
T ss_dssp E
T ss_pred c
Confidence 5
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.33 E-value=4.5e-10 Score=82.17 Aligned_cols=141 Identities=11% Similarity=0.200 Sum_probs=102.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeec--CC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQ--HT 78 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~--~~ 78 (174)
++.++++...++.|.+||.. ++.+..+.. +...+..+++++++.++++. .++.|++||.... .+..+.. +.
T Consensus 131 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~ 206 (286)
T 1q7f_A 131 KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---YLRQIGGEGIT 206 (286)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---EEEEESCTTTS
T ss_pred CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC---EEEEEccCCcc
Confidence 45678888888999999964 566555542 23458899999988876664 5778999997432 2333322 23
Q ss_pred CCEEEEEEeeCCCEEEEecCCC-cEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDG-TVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg-~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.....++++++|+++++...++ .|.+||.... ....+.. ...+.+++++|+++.+++ +.|+.|++|++..
T Consensus 207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 207 NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 5788999999999999988886 9999997543 3333322 234789999999986666 5789999999865
No 166
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.33 E-value=3e-10 Score=84.78 Aligned_cols=147 Identities=10% Similarity=0.079 Sum_probs=102.9
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-C----CcEEEEEcCCCCCCCeEEeecCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-N----PHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
++.+++++..++.|.+||.++++.......+...+..+++++++.++++.. + +.|.+||..++..........+.
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 456777888899999999988876554434556799999999988777654 3 47999998766433121111234
Q ss_pred CCEEEEEEeeCCCEEEEecC------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260 79 NNVMAVGFQCDGNWMYSGSE------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA 150 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~ 150 (174)
..+..++++++|+++++... .+.|..+|...............++.++++|+++.++ +.+.++.|.+||+..
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 56889999999998887764 3556666665544332223334578999999998654 455678999999964
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.32 E-value=7.9e-11 Score=89.53 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=99.8
Q ss_pred CcEEEEEeeCCCcEEEEECC-CCceeEEeecC-CCCeEEEEEcCCCce--EEEe--------------cCCcEEEEEcCC
Q 042260 4 PSVILATASYDKTIKFWEAK-SGRCYRTIQYP-DSQVNRLEITPNKHY--LAAA--------------GNPHIRLFDVNS 65 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--~~~~--------------~d~~i~i~d~~~ 65 (174)
++++|++++.+ +|.+||+. +++........ ......++++|++.. ++++ .++.+++|++..
T Consensus 50 dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~ 128 (365)
T 1jof_A 50 ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128 (365)
T ss_dssp TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECT
T ss_pred CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCC
Confidence 45677888888 99999987 77664433211 123556889999883 4333 467899999974
Q ss_pred -CCCCCeEE-ee-cCCCCEEEEEEeeCCCEEEEec-CCCcEEEEeCC-CCeeE--Eeec---ccCcEEEEEEccCCCEEE
Q 042260 66 -SSPQPVMS-YD-QHTNNVMAVGFQCDGNWMYSGS-EDGTVKIWDLR-APVCQ--MEYE---SRAAVNTVVLHPNQTELI 135 (174)
Q Consensus 66 -~~~~~~~~-~~-~~~~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~-~~~~~--~~~~---~~~~v~~~~~~~~~~~l~ 135 (174)
++...... +. .+...+..++|+|+|++++++. .++.|++||+. +.+.. ..+. +...+..++|+|+++.++
T Consensus 129 ~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~ 208 (365)
T 1jof_A 129 TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY 208 (365)
T ss_dssp TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEE
Confidence 32211111 11 2456799999999999887665 46799999997 55432 2222 245689999999999988
Q ss_pred EeeC-CCcEEEEeCC
Q 042260 136 SGDQ-NGNIRVWDLT 149 (174)
Q Consensus 136 s~~~-d~~i~iwd~~ 149 (174)
+++. ++.|.+|++.
T Consensus 209 v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 209 ALMEAGNRICEYVID 223 (365)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEECCCCeEEEEEEe
Confidence 7765 6889999876
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.32 E-value=1e-09 Score=82.27 Aligned_cols=141 Identities=13% Similarity=0.183 Sum_probs=102.8
Q ss_pred CcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEe---------ecCCCCEEE
Q 042260 15 KTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSY---------DQHTNNVMA 83 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~---------~~~~~~v~~ 83 (174)
++|.+||..+++.+..+.. .-.....+++++++.++++. .++.|+.||..... ..+..+ ..+......
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcE
Confidence 4799999998888765542 22467899999998876664 56789999975431 123333 234457889
Q ss_pred EEEee-CCCEEEEec-CCCcEEEEeCCCCeeEEeeccc-----------CcEEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 042260 84 VGFQC-DGNWMYSGS-EDGTVKIWDLRAPVCQMEYESR-----------AAVNTVVLHPN-QTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 84 ~~~~~-~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~-----------~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~ 149 (174)
+++++ +++++++.+ .++.|++||.. ......+... ..+..++++|+ +..+++...++.|++||..
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 99999 899999987 69999999954 4444444211 23789999998 6767777788999999999
Q ss_pred CCcceeec
Q 042260 150 ANSCSCEL 157 (174)
Q Consensus 150 ~~~~~~~~ 157 (174)
+++....+
T Consensus 227 ~G~~~~~~ 234 (329)
T 3fvz_A 227 TKEFVREI 234 (329)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEEE
Confidence 77777665
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.29 E-value=1.7e-10 Score=86.65 Aligned_cols=147 Identities=14% Similarity=0.187 Sum_probs=104.9
Q ss_pred CcEEEEEee-CCCcEEEEECCCCceeEEeecCC----------CCeEEEEEcCC-CceEEEe-cCCcEEEEEcCCCCCCC
Q 042260 4 PSVILATAS-YDKTIKFWEAKSGRCYRTIQYPD----------SQVNRLEITPN-KHYLAAA-GNPHIRLFDVNSSSPQP 70 (174)
Q Consensus 4 ~~~~l~s~s-~D~~v~vwd~~~~~~~~~~~~~~----------~~v~~~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~ 70 (174)
.+.++++.+ .++.|++|| .+|+.+..+.... .....++++|+ +.++++. .++.|++||..+++...
T Consensus 154 ~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~ 232 (329)
T 3fvz_A 154 TGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR 232 (329)
T ss_dssp TCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence 466777776 689999999 5677666653221 23788999997 6665554 57789999998654322
Q ss_pred eEEeecCCCCEEEEEEee------CCCEEEEecCCCcEEEEeCCCCeeEEeec----ccCcEEEEEEccCCCEEEEeeCC
Q 042260 71 VMSYDQHTNNVMAVGFQC------DGNWMYSGSEDGTVKIWDLRAPVCQMEYE----SRAAVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~------~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d 140 (174)
......+...+..+++.| +++..++...+..|++||..+......+. +...+..++++|++..+++...+
T Consensus 233 ~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp EECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred EEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence 222234456677888887 44444445556799999998888777663 33558999999999878888889
Q ss_pred CcEEEEeCCCC
Q 042260 141 GNIRVWDLTAN 151 (174)
Q Consensus 141 ~~i~iwd~~~~ 151 (174)
+.|++|++...
T Consensus 313 ~~I~~~~~~~~ 323 (329)
T 3fvz_A 313 NTVWKFTLTEK 323 (329)
T ss_dssp CCEEEEEEEEC
T ss_pred CEEEEEeCCcc
Confidence 99999998753
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.28 E-value=6.2e-11 Score=98.02 Aligned_cols=147 Identities=7% Similarity=0.025 Sum_probs=103.1
Q ss_pred CcEEEEEeeCC---------CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEe
Q 042260 4 PSVILATASYD---------KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 4 ~~~~l~s~s~D---------~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 74 (174)
+++.|+.++.+ +.+.+||+++++... +..+...+...+|+|+|..++...++.|++||+.++.... .+.
T Consensus 72 dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~-lt~ 149 (740)
T 4a5s_A 72 DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR-ITW 149 (740)
T ss_dssp TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCS
T ss_pred CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-EcC
Confidence 56677777776 556799999987653 4445567899999999998888788999999997765322 222
Q ss_pred ecCCCCE-----------------EEEEEeeCCCEEEEecCCC------------------------------------c
Q 042260 75 DQHTNNV-----------------MAVGFQCDGNWMYSGSEDG------------------------------------T 101 (174)
Q Consensus 75 ~~~~~~v-----------------~~~~~~~~~~~l~t~~~dg------------------------------------~ 101 (174)
.++...+ ..+.|+|+|+.|+.++.|. .
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~ 229 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK 229 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence 2332222 3588999999999875321 4
Q ss_pred EEEEeCCC---C---eeEEeec------ccCcEEEEEEccCCCEEEEee----CCCcEEEEeCCCCc
Q 042260 102 VKIWDLRA---P---VCQMEYE------SRAAVNTVVLHPNQTELISGD----QNGNIRVWDLTANS 152 (174)
Q Consensus 102 v~iwd~~~---~---~~~~~~~------~~~~v~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~ 152 (174)
+++||+.+ . ....... +...+..++|+|+++.++... .+..|++||+.++.
T Consensus 230 l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 78899887 5 3222111 345588999999999665442 23469999999876
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.26 E-value=3.9e-10 Score=85.62 Aligned_cols=146 Identities=8% Similarity=0.028 Sum_probs=101.4
Q ss_pred CcEEEEEeeC-CCc--EEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 4 PSVILATASY-DKT--IKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 4 ~~~~l~s~s~-D~~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+++.|+.++. ++. |.+||+.+++.......+...+....|+|++..++.+ .+..+++||+.+++...+ ...+..
T Consensus 46 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~--~~~~~~ 123 (388)
T 3pe7_A 46 DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV--YQVPAE 123 (388)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE--EECCTT
T ss_pred CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee--eechhh
Confidence 4666666665 674 8888999888776665555445567899999876654 566899999988754333 333444
Q ss_pred CEEEEE--EeeCCCEEEE----------------------ecCCCcEEEEeCCCCeeEEeecccCcEEEEEEcc-CCCEE
Q 042260 80 NVMAVG--FQCDGNWMYS----------------------GSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHP-NQTEL 134 (174)
Q Consensus 80 ~v~~~~--~~~~~~~l~t----------------------~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 134 (174)
.+.... ++++++.++. ...+..|.+||+.+............+..+.|+| +++.|
T Consensus 124 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l 203 (388)
T 3pe7_A 124 WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTV 203 (388)
T ss_dssp EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEE
T ss_pred cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEE
Confidence 443333 4788888774 2345789999998876655555566789999999 99988
Q ss_pred EEeeCC------CcEEEEeCCCC
Q 042260 135 ISGDQN------GNIRVWDLTAN 151 (174)
Q Consensus 135 ~s~~~d------~~i~iwd~~~~ 151 (174)
+..+.+ ..|.++|....
T Consensus 204 ~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 204 AFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp EEEECSCTTTSSCSEEEEETTSC
T ss_pred EEEEecCCCCCcceEEEEeCCCC
Confidence 766543 36788887654
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.25 E-value=2.3e-09 Score=78.41 Aligned_cols=147 Identities=13% Similarity=0.176 Sum_probs=105.5
Q ss_pred CcEEEEEeeC-CCcEEEEECCCCceeEEeec-CCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEee--cCC
Q 042260 4 PSVILATASY-DKTIKFWEAKSGRCYRTIQY-PDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYD--QHT 78 (174)
Q Consensus 4 ~~~~l~s~s~-D~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~--~~~ 78 (174)
++.++++... ++.|++|| .+++.+..+.. +...+..+++++++.++++. .++.|.+||.... ....+. .+.
T Consensus 88 ~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~ 163 (286)
T 1q7f_A 88 SGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---VLHKFGCSKHL 163 (286)
T ss_dssp TTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---EEEEEECTTTC
T ss_pred CCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC---EEEEeCCCCcc
Confidence 4566666643 88999999 56777666643 23468899999998877664 4678999996432 222232 344
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCCC-cEEEEeCCCCcce
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQNG-NIRVWDLTANSCS 154 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~ 154 (174)
.....++++++|+.+++...++.|++||.... ....+... ..+..++++|+++.+++...++ .|.+||.. +...
T Consensus 164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~ 241 (286)
T 1q7f_A 164 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI 241 (286)
T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE
T ss_pred CCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEE
Confidence 56889999999998888888999999998654 33344322 5689999999998888877775 99999964 4444
Q ss_pred ee
Q 042260 155 CE 156 (174)
Q Consensus 155 ~~ 156 (174)
..
T Consensus 242 ~~ 243 (286)
T 1q7f_A 242 SA 243 (286)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.23 E-value=7.7e-10 Score=84.02 Aligned_cols=147 Identities=10% Similarity=-0.047 Sum_probs=102.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEE--EEcCCCceEEEe-----------------------cCCcE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRL--EITPNKHYLAAA-----------------------GNPHI 58 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~-----------------------~d~~i 58 (174)
+++.|+.++.++.|++||+.+++.......+...+... .+++++..+++. .+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 56678888889999999999998776666555544333 347888777632 23468
Q ss_pred EEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCC------CcEEEEeCCCCeeEEeeccc--CcEEEEEEcc
Q 042260 59 RLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSED------GTVKIWDLRAPVCQMEYESR--AAVNTVVLHP 129 (174)
Q Consensus 59 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~ 129 (174)
.+||+.+++... +..+...+..+.|+| +|+.|+..+.+ ..|.++|............. ..+...+|+|
T Consensus 171 ~~~d~~~g~~~~---l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp 247 (388)
T 3pe7_A 171 MRVDLKTGESTV---ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP 247 (388)
T ss_dssp EEEETTTCCEEE---EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT
T ss_pred EEEECCCCceEE---eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC
Confidence 899998764332 334556789999999 99988877653 37888887655433322322 3577889999
Q ss_pred CCCEEEEeeC-CC----cEEEEeCCCCcc
Q 042260 130 NQTELISGDQ-NG----NIRVWDLTANSC 153 (174)
Q Consensus 130 ~~~~l~s~~~-d~----~i~iwd~~~~~~ 153 (174)
+++.|+..+. ++ .|.+||+.+++.
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 248 DGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp TSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred CCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 9997765432 22 399999998763
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.21 E-value=2.7e-09 Score=80.11 Aligned_cols=152 Identities=5% Similarity=-0.075 Sum_probs=110.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCC----
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHT---- 78 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~---- 78 (174)
.+.+.++...+++|.+||.++++.+..+.. ......+++++++.++++. .++.|.+||..+.+.. .......
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~--~~i~~g~~~~~ 129 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT--GYIECPDMDME 129 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE--EEEECTTCCTT
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE--EEEEcCCcccc
Confidence 356777888889999999999999888853 3568889998888766665 6788999999876432 2222211
Q ss_pred -CCEEEEEEeeCCCEEEEec-CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC----------CcEEEE
Q 042260 79 -NNVMAVGFQCDGNWMYSGS-EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN----------GNIRVW 146 (174)
Q Consensus 79 -~~v~~~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----------~~i~iw 146 (174)
.....+++ .+++.+++.. .++.|.++|+.+.....++........++++|+++.+++...+ +.|.++
T Consensus 130 ~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 130 SGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp TCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred CCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence 13445666 4555566554 4889999999998877776665667889999999877666544 789999
Q ss_pred eCCCCcceeecCc
Q 042260 147 DLTANSCSCELGL 159 (174)
Q Consensus 147 d~~~~~~~~~~~~ 159 (174)
|..+.+....+..
T Consensus 209 d~~t~~v~~~~~~ 221 (328)
T 3dsm_A 209 DAETFTVEKQFKF 221 (328)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCeEEEEEec
Confidence 9998876655543
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.20 E-value=2.6e-10 Score=92.72 Aligned_cols=144 Identities=8% Similarity=0.012 Sum_probs=97.0
Q ss_pred cEEEEEe--eCCCcEEEEECCCCceeEEeecCCCCeE---------EEEEc--CCCce-EEEecC--CcEEEEEcC--C-
Q 042260 5 SVILATA--SYDKTIKFWEAKSGRCYRTIQYPDSQVN---------RLEIT--PNKHY-LAAAGN--PHIRLFDVN--S- 65 (174)
Q Consensus 5 ~~~l~s~--s~D~~v~vwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~~~~~d--~~i~i~d~~--~- 65 (174)
..++++. +.++..+||....+.....+..+...+. ...|+ |++.. ++.+.+ ..|.++++. .
T Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~ 114 (662)
T 3azo_A 35 EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGG 114 (662)
T ss_dssp EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTC
T ss_pred eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCC
Confidence 3345555 5688999998654444555554544444 44454 88877 665554 345555554 1
Q ss_pred CCCCCeEEeec-----CCCCEEEEEEeeCCCEEEEecCC----------CcEEEEeCCC------CeeEEee-cccCcEE
Q 042260 66 SSPQPVMSYDQ-----HTNNVMAVGFQCDGNWMYSGSED----------GTVKIWDLRA------PVCQMEY-ESRAAVN 123 (174)
Q Consensus 66 ~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~t~~~d----------g~v~iwd~~~------~~~~~~~-~~~~~v~ 123 (174)
+.. ..+.. |...+..++|+|+|+.|+.++.+ ..|.+||+.. ....... .....+.
T Consensus 115 ~~~---~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (662)
T 3azo_A 115 AVP---RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVT 191 (662)
T ss_dssp CCC---EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEEC
T ss_pred CCC---EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCccc
Confidence 322 22223 55678899999999999998877 5899999987 5544333 3456678
Q ss_pred EEEEccCCCEEEEeeCC--------CcEEEEeCC-CC
Q 042260 124 TVVLHPNQTELISGDQN--------GNIRVWDLT-AN 151 (174)
Q Consensus 124 ~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~ 151 (174)
.++|+|+++.|+.++.+ ..|.+||+. ++
T Consensus 192 ~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 192 GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 89999999999877754 379999998 45
No 176
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.18 E-value=2.9e-09 Score=79.98 Aligned_cols=161 Identities=10% Similarity=0.105 Sum_probs=116.6
Q ss_pred cEEEEEee-CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-C----------CcEEEEEcCCCCCCCeE
Q 042260 5 SVILATAS-YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-N----------PHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 5 ~~~l~s~s-~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d----------~~i~i~d~~~~~~~~~~ 72 (174)
+.++++.. .+++|.++|+++++.+..+.... ....+.+++++.++++.. + +.+.++|..+.+. ..
T Consensus 141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--~~ 217 (328)
T 3dsm_A 141 KYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV--EK 217 (328)
T ss_dssp TEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--EE
T ss_pred CEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE--EE
Confidence 44555554 58899999999998888776543 456788999888776653 2 5799999876642 22
Q ss_pred EeecC-CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEE-ee-cc-cCcEEEEEEcc-CCCEEEEe----eCCCcE
Q 042260 73 SYDQH-TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQM-EY-ES-RAAVNTVVLHP-NQTELISG----DQNGNI 143 (174)
Q Consensus 73 ~~~~~-~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~-~~-~~-~~~v~~~~~~~-~~~~l~s~----~~d~~i 143 (174)
.+... ......++++++++.++.+.. .|.+||..+.+... .+ .. ...+..++++| ++...++. ..++.|
T Consensus 218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 22221 236789999999998887655 89999998765431 11 11 35688999999 45555555 568899
Q ss_pred EEEeCCCCcceeecCcccceeEEEEEee
Q 042260 144 RVWDLTANSCSCELGLQYGLRTFLFYHQ 171 (174)
Q Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 171 (174)
.+||.. ++...+++....+..+.|=|+
T Consensus 296 ~v~d~~-g~~~~~i~~G~~P~~~~~~~~ 322 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFYVGIIPGAFCWKLE 322 (328)
T ss_dssp EEECTT-CCEEEEEEEEESEEEEEEECC
T ss_pred EEECCC-CCEEEEEEeccCcceEEEecc
Confidence 999998 888888888888888888665
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.17 E-value=2.8e-09 Score=78.40 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=101.2
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEe-e-cCCCCEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSY-D-QHTNNVM 82 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~-~-~~~~~v~ 82 (174)
.+++++..++.|..||..++ ...+..+...+.++++++++.++++.. ++.|.+||..+++....... . .....+.
T Consensus 41 ~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 118 (296)
T 3e5z_A 41 AVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN 118 (296)
T ss_dssp EEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC
T ss_pred EEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC
Confidence 37888999999999999877 566666667789999999998877664 57899999876643322111 1 1123456
Q ss_pred EEEEeeCCCEEEE----ec-------------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEE
Q 042260 83 AVGFQCDGNWMYS----GS-------------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRV 145 (174)
Q Consensus 83 ~~~~~~~~~~l~t----~~-------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i 145 (174)
.++++++|+++++ |. ..+.|..+|.. ............++.++|+|+++.+++.+.++.|.+
T Consensus 119 ~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~ 197 (296)
T 3e5z_A 119 DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHR 197 (296)
T ss_dssp CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEE
Confidence 7889999999887 33 13456666655 333333344456789999999998877777889999
Q ss_pred EeCC
Q 042260 146 WDLT 149 (174)
Q Consensus 146 wd~~ 149 (174)
||+.
T Consensus 198 ~~~~ 201 (296)
T 3e5z_A 198 YCLN 201 (296)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9997
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.17 E-value=1e-09 Score=89.24 Aligned_cols=151 Identities=7% Similarity=0.022 Sum_probs=101.5
Q ss_pred CcEEEEEeeCC----------CcEEEEECCC------CceeEEee-cCCCCeEEEEEcCCCceEEE-ecC--------Cc
Q 042260 4 PSVILATASYD----------KTIKFWEAKS------GRCYRTIQ-YPDSQVNRLEITPNKHYLAA-AGN--------PH 57 (174)
Q Consensus 4 ~~~~l~s~s~D----------~~v~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~-~~d--------~~ 57 (174)
+++.|+.++.| .+|++||+.+ ++.. .+. .+...+..+.|+|++..++. +.+ ..
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~ 218 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE 218 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence 45567777776 5899999988 5543 333 34456778899999987764 433 36
Q ss_pred EEEEEcC-CCCC-CCeEEeecCCCCEEEEEEeeCCCEEEEecCCC--cEEEEeCCCCeeEEeecccC---------cEEE
Q 042260 58 IRLFDVN-SSSP-QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--TVKIWDLRAPVCQMEYESRA---------AVNT 124 (174)
Q Consensus 58 i~i~d~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~---------~v~~ 124 (174)
|.+||+. ++.. ........+...+..+.|+++|++++++..++ .|.+||+............. .+..
T Consensus 219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence 8999997 3411 11222234567899999999999888888888 56666665554433222211 1567
Q ss_pred EEEccCCCEEEEeeCCCcEEEE--eCCCCcceeec
Q 042260 125 VVLHPNQTELISGDQNGNIRVW--DLTANSCSCEL 157 (174)
Q Consensus 125 ~~~~~~~~~l~s~~~d~~i~iw--d~~~~~~~~~~ 157 (174)
++|+|++..++++.. +.++|| |+..+. ..++
T Consensus 299 ~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l 331 (662)
T 3azo_A 299 FAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA 331 (662)
T ss_dssp EEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC
T ss_pred EeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe
Confidence 889999999999988 999999 544443 3343
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.16 E-value=1.5e-08 Score=77.19 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=66.3
Q ss_pred EEEeeCCCEEEEecC-----------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC-
Q 042260 84 VGFQCDGNWMYSGSE-----------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN- 151 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~-----------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~- 151 (174)
++++++++.++.+.. ++.|.+||+.+.+.+.++..+. +..++|+|+++.|+++.. ++|.+||..++
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence 578888777665432 3489999999999888877666 999999999999988876 89999999999
Q ss_pred -cceeec-CcccceeEEEE
Q 042260 152 -SCSCEL-GLQYGLRTFLF 168 (174)
Q Consensus 152 -~~~~~~-~~~~~~~~~~~ 168 (174)
+...++ .....+..+.+
T Consensus 337 l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 337 PKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp CEEEEEETTSCSSEEEEEE
T ss_pred ceeeEEeccCCCCcEEEEe
Confidence 888775 55666666654
No 180
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.15 E-value=1.1e-09 Score=84.38 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=93.2
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
+..|+++ .++.|++||+.+.........+...+..+.+.+.+ +++...|+.+.+||+..+... .+...|.++
T Consensus 97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~------~~~~~Vs~v 168 (388)
T 1xip_A 97 GDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTK------QLAQNVTSF 168 (388)
T ss_dssp TTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEE------EEEESEEEE
T ss_pred CCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCccc------cccCCceEE
Confidence 3466677 88999999988766555555566678777666543 566678999999999865421 144689999
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCee--EEee------c----ccCcEEEEEEccCCCEEEE
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVC--QMEY------E----SRAAVNTVVLHPNQTELIS 136 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~--~~~~------~----~~~~v~~~~~~~~~~~l~s 136 (174)
+|+++| ++.|..||.+++|+.....+ ..++ . +...|.++.|.+++.++++
T Consensus 169 ~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 169 DVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999999 67899999999999887665 4444 2 4577999999999988876
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.14 E-value=4.2e-09 Score=76.09 Aligned_cols=148 Identities=7% Similarity=-0.017 Sum_probs=104.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
++.++++...++.|.+|+..+.............+.++++++++.++++. .++.|.+||...... ......+.....
T Consensus 118 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~ 195 (270)
T 1rwi_B 118 QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--VVLPFTDITAPW 195 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE--EECCCSSCCSEE
T ss_pred CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce--EeecccCCCCce
Confidence 45567777778889999766544332222222356789999988776654 467899999865421 111122336688
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
++++.++|+.+++...++.|.+||........... ....+.+++++|+++.+++...++.|+++++..++.
T Consensus 196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 99999999888888889999999987654333222 225689999999999888888899999999987654
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.14 E-value=5.7e-09 Score=76.75 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=109.8
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCceEEEec--CCcEEEEEcCCCCCCCeEEee----
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHYLAAAG--NPHIRLFDVNSSSPQPVMSYD---- 75 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~---- 75 (174)
.++.+++ +.++.|..||. +|+.+..+..+ ...+.++.+.+++.++++.. ++.+..+|. .++......+.
T Consensus 46 pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~ 121 (276)
T 3no2_A 46 KAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE 121 (276)
T ss_dssp TTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS
T ss_pred CCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC
Confidence 3566777 45778999998 79988888764 34678888999998877653 334444453 23211111111
Q ss_pred cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 76 QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 76 ~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
.+......+...++|+++++...++.|..||.. .+.+.++.....+.++...++++.+++++.++.|..+|..+++.++
T Consensus 122 ~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 122 RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred cccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 111233445678899999999999999999998 7777777766666778889999999998888899999999999888
Q ss_pred ecC
Q 042260 156 ELG 158 (174)
Q Consensus 156 ~~~ 158 (174)
++.
T Consensus 201 ~~~ 203 (276)
T 3no2_A 201 RVN 203 (276)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.08 E-value=7e-08 Score=77.79 Aligned_cols=151 Identities=10% Similarity=0.081 Sum_probs=107.7
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCcEEEEEcCCCCCCCeEEeecCCCCEEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~ 83 (174)
+.++++...+++|.++|..+++.+..+... ..+..+.++|++.++. ++.++.+.+||+.......+..... ......
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ 244 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS 244 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence 467888899999999999999999888754 3577899999988755 4567789999996222233333333 234678
Q ss_pred EEEe----eCCCEEEEecC-CCcEEEEeCCCCeeEEeecc----------------------------------------
Q 042260 84 VGFQ----CDGNWMYSGSE-DGTVKIWDLRAPVCQMEYES---------------------------------------- 118 (174)
Q Consensus 84 ~~~~----~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~---------------------------------------- 118 (174)
++++ |+|++++.+.. ++.+.++|..+.+.+..+..
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 8999 69998777654 58999999876554433211
Q ss_pred ----------------cCcEEEEEEccCCCEEEEee-CCCcEEEEeCCCCcceeec
Q 042260 119 ----------------RAAVNTVVLHPNQTELISGD-QNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 119 ----------------~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~ 157 (174)
.....++.|+|++++++++. .++.|.++|..+++.....
T Consensus 325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 01123567899999877655 4678999999988765443
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.07 E-value=1.6e-09 Score=82.28 Aligned_cols=148 Identities=6% Similarity=-0.079 Sum_probs=97.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEE-------------------EEEcCCCceEEE------ecCCcE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNR-------------------LEITPNKHYLAA------AGNPHI 58 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~~------~~d~~i 58 (174)
+++.|+.++.++.|++||+.+++.......+...... ..++|++..++. ..+..+
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 5667888888889999999988765555433332222 234565554332 234468
Q ss_pred EEEEcCCCCCCCeEEeecCCCCEEEEEEee-CCCEEEEecCC------CcEEEEeCCCCeeEEeecc--cCcEEEEEEcc
Q 042260 59 RLFDVNSSSPQPVMSYDQHTNNVMAVGFQC-DGNWMYSGSED------GTVKIWDLRAPVCQMEYES--RAAVNTVVLHP 129 (174)
Q Consensus 59 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~ 129 (174)
.+||+.+++...+ ..+...+..+.|+| +++.|+..+.+ ..|.+||+........... ...+..++|+|
T Consensus 171 ~~~d~~~g~~~~~---~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 171 IKVDIETGELEVI---HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP 247 (396)
T ss_dssp EEEETTTCCEEEE---EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred EEEECCCCcEEee---ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence 8999977643322 24567788999999 78876665543 4688889876543322222 23578899999
Q ss_pred CCCEEEEeeCC-----CcEEEEeCCCCcce
Q 042260 130 NQTELISGDQN-----GNIRVWDLTANSCS 154 (174)
Q Consensus 130 ~~~~l~s~~~d-----~~i~iwd~~~~~~~ 154 (174)
+++.|+.++.+ +.|.+||+.+++..
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENE 277 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEE
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeE
Confidence 99987766543 44999999877543
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.05 E-value=2.8e-08 Score=73.00 Aligned_cols=161 Identities=9% Similarity=0.059 Sum_probs=104.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecC----CCCeEEEEEcCCCceEEEe----c-----------C-CcEEEEEc
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP----DSQVNRLEITPNKHYLAAA----G-----------N-PHIRLFDV 63 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~----~-----------d-~~i~i~d~ 63 (174)
++.++++...++.|.+||.++++........ ...+..++++|++.++++. . + +.-.+|.+
T Consensus 79 dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 79 QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEE
Confidence 4667777777789999999888754332211 1245679999999887752 1 0 12245555
Q ss_pred CCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCC-CCee---EEee-cccCcEEEEEEccCCCEEEEee
Q 042260 64 NSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR-APVC---QMEY-ESRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 64 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-~~~~---~~~~-~~~~~v~~~~~~~~~~~l~s~~ 138 (174)
.... .......+......++|+++++.+++.+.++.|.+||+. .... ...+ .....+..+++.++++..++.
T Consensus 159 ~~~g--~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 159 APDG--TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp CTTS--CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred CCCC--CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 4331 223334456677899999999988888889999999986 3332 1222 123446789999999866655
Q ss_pred CCCcEEEEeCCCCcceeecCcccceeEEEEE
Q 042260 139 QNGNIRVWDLTANSCSCELGLQYGLRTFLFY 169 (174)
Q Consensus 139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 169 (174)
++.|.+||.+ +.....+..+..+....|.
T Consensus 236 -~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~ 264 (296)
T 3e5z_A 236 -GDGVHVLTPD-GDELGRVLTPQTTSNLCFG 264 (296)
T ss_dssp -TTEEEEECTT-SCEEEEEECSSCCCEEEEE
T ss_pred -CCeEEEECCC-CCEEEEEECCCCceeEEEE
Confidence 7889999987 5555555443334444443
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.05 E-value=2.3e-09 Score=88.12 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=94.1
Q ss_pred CcEEEE-----EeeCCCcEEEEECCCCcee-EEeecCCCCeEEEEEcCCCceEEE-ecCCc-------------EEEEEc
Q 042260 4 PSVILA-----TASYDKTIKFWEAKSGRCY-RTIQYPDSQVNRLEITPNKHYLAA-AGNPH-------------IRLFDV 63 (174)
Q Consensus 4 ~~~~l~-----s~s~D~~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~-------------i~i~d~ 63 (174)
+++.|| +|+.+.+|++||+.+|+.+ .. .........++|+|++..++. +.+.. |++|++
T Consensus 131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l 209 (695)
T 2bkl_A 131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTL 209 (695)
T ss_dssp TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEET
T ss_pred CCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEEC
Confidence 455565 5556678999999998865 21 112222267899999876554 44443 999999
Q ss_pred CCCCCCCeEEee--cCCCCEEEEEEeeCCCEEEEecCCC----cEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe
Q 042260 64 NSSSPQPVMSYD--QHTNNVMAVGFQCDGNWMYSGSEDG----TVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 64 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 137 (174)
.++.......+. .+...+..+.|+++|++|+.++.++ .|.+||...............+....+ +++..++..
T Consensus 210 ~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s 288 (695)
T 2bkl_A 210 GTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLT 288 (695)
T ss_dssp TSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEE
T ss_pred CCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEE
Confidence 876533233333 3446788999999999988877666 677777654433332333334455555 555544443
Q ss_pred e---CCCcEEEEeCCCCc
Q 042260 138 D---QNGNIRVWDLTANS 152 (174)
Q Consensus 138 ~---~d~~i~iwd~~~~~ 152 (174)
. .++.|.+||+.++.
T Consensus 289 ~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 289 DEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp CTTCTTCEEEEEBTTBCS
T ss_pred CCCCCCCEEEEEeCCCCC
Confidence 3 25789999998764
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.04 E-value=2.5e-08 Score=71.95 Aligned_cols=148 Identities=7% Similarity=-0.018 Sum_probs=99.3
Q ss_pred CcEEEE-EeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee-cCCCCE
Q 042260 4 PSVILA-TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD-QHTNNV 81 (174)
Q Consensus 4 ~~~~l~-s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v 81 (174)
++.+++ +.+.++.|.+||..++............+.++++++++.++++..++.|..||...... ..+. ......
T Consensus 34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~---~~~~~~~~~~p 110 (270)
T 1rwi_B 34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ---TVLPFDGLNYP 110 (270)
T ss_dssp TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC---EECCCCSCSSE
T ss_pred CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE---eeeecCCcCCC
Confidence 455666 55778899999876554322111222457789999988877665577899999765422 1121 223568
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
..+++.++|+.+++...++.|.+||..+....... .....+..++++|+++.+++...++.|..||.......
T Consensus 111 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 184 (270)
T 1rwi_B 111 EGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV 184 (270)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred cceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence 89999999998888888899999987654433221 22245788999999987777767789999998876543
No 188
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.02 E-value=6.4e-09 Score=79.20 Aligned_cols=133 Identities=9% Similarity=0.148 Sum_probs=96.9
Q ss_pred CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCCCCeEEeecC----
Q 042260 13 YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSPQPVMSYDQH---- 77 (174)
Q Consensus 13 ~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~---- 77 (174)
.|++|.+||..+++.+..+.....+ .++++|++..++.+. ++.|.+||..+.+. .......
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF--EKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE--EEEEEECTTBC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE--EEEEEcCcccc
Confidence 4789999999999988887765443 899999998776552 45699999876533 2222221
Q ss_pred --CCCEEEEEEeeCCCEEEEecC--CCcEEEEeCCCCeeEEe-ecccCcEEEEEEccCC-CEEEEeeCCCcEEEEeCCC
Q 042260 78 --TNNVMAVGFQCDGNWMYSGSE--DGTVKIWDLRAPVCQME-YESRAAVNTVVLHPNQ-TELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 78 --~~~v~~~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~ 150 (174)
......++++++|++++.+.. ++.|.+||+.+.+...+ +..... ..+.+.|++ ..+++.+.||.+..|++..
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 234567899999999988763 68999999999887766 554332 335567765 5677788889998888864
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.01 E-value=1.7e-08 Score=83.03 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=95.1
Q ss_pred CcEEEEEeeC-CC----cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEE-EecCCc----------------EEEE
Q 042260 4 PSVILATASY-DK----TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLA-AAGNPH----------------IRLF 61 (174)
Q Consensus 4 ~~~~l~s~s~-D~----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~~----------------i~i~ 61 (174)
+++.|+.++. +| +|++||+.+|+.......+ ..+..++|+|++..|+ ++.+.. |++|
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 213 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence 4455554433 33 8999999999876543222 2366799999987655 444433 8999
Q ss_pred EcCCCCCCCeEEeec--CCCCEEEEEEeeCCCEEEEecC-----CCcEEEEeCCC------C--eeEEeecccCcEEEEE
Q 042260 62 DVNSSSPQPVMSYDQ--HTNNVMAVGFQCDGNWMYSGSE-----DGTVKIWDLRA------P--VCQMEYESRAAVNTVV 126 (174)
Q Consensus 62 d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~-----dg~v~iwd~~~------~--~~~~~~~~~~~v~~~~ 126 (174)
++.++.......+.. +...+..+.|+++|++|+..+. +..|.+||+.. + .......+...+.. .
T Consensus 214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 292 (710)
T 2xdw_A 214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-Y 292 (710)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-E
T ss_pred ECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-E
Confidence 997764332333333 3455788999999999887764 67899999875 3 22222223333333 4
Q ss_pred EccCCCEEEEeeC----CCcEEEEeCCCCc
Q 042260 127 LHPNQTELISGDQ----NGNIRVWDLTANS 152 (174)
Q Consensus 127 ~~~~~~~l~s~~~----d~~i~iwd~~~~~ 152 (174)
++|++..|+..+. ++.|.+||+.++.
T Consensus 293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 7788887765543 3369999998763
No 190
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.99 E-value=3.5e-11 Score=92.08 Aligned_cols=145 Identities=13% Similarity=0.129 Sum_probs=77.1
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC-EE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN-VM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~-v~ 82 (174)
+..+++++.|+.|+.||.++|+.+..+.. ..+....+..++.++++ +.|+.++.||..+++.. ..+..+... +.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~--w~~~~~~~~~~~ 84 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL--TKLPFTIPELVQ 84 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS--EECSCCHHHHHT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee--eeeeccCccccc
Confidence 34688899999999999999999877765 33444334445545544 57889999999776432 222211110 00
Q ss_pred -EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 83 -AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 83 -~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
...+ ..+..+++++.|+.++.||.++.+....+..... ..++|++..|++++.|+.|+.||.++++..++.
T Consensus 85 ~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 85 ASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred cCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 0001 1345678888999999999998877665544332 345667888999999999999999998876654
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.97 E-value=5.8e-08 Score=72.30 Aligned_cols=139 Identities=11% Similarity=0.058 Sum_probs=97.4
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 86 (174)
+++.+.++.++.| .++....+..+...+.+++|++++.++++. .++.|.+||..+++.... ...+...+.++++
T Consensus 20 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~i~~ 94 (333)
T 2dg1_A 20 AVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--FVSHKANPAAIKI 94 (333)
T ss_dssp SSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--EECSSSSEEEEEE
T ss_pred eeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE--eeCCCCCcceEEE
Confidence 3444667788888 445566666555667899999998877654 567899999876643222 2235577999999
Q ss_pred eeCCCEEEEecCC----CcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeC------CCcEEEEeCCCC
Q 042260 87 QCDGNWMYSGSED----GTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQ------NGNIRVWDLTAN 151 (174)
Q Consensus 87 ~~~~~~l~t~~~d----g~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~ 151 (174)
+++++++++...+ +.|.+||.........+. ....+++++++|+++.+++... .+.|..+|...+
T Consensus 95 ~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 95 HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC
Confidence 9999988887766 789999988765442222 3356899999999987776543 245666665543
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.95 E-value=2e-08 Score=75.11 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=80.4
Q ss_pred CCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-C---Cc--EEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260 13 YDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-N---PH--IRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 13 ~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d---~~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 86 (174)
.++.|.+||+.+++... + ..+....|+|++..++... + +. |.+||+.+++...+. . +.. +..+.|
T Consensus 41 ~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~--~-~~~-~~~~~w 111 (347)
T 2gop_A 41 YENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL--E-AKN-IRSLEW 111 (347)
T ss_dssp EEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE--E-ESE-EEEEEE
T ss_pred ccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE--c-CCC-ccceeE
Confidence 36779999998876533 2 3578899999998765432 2 33 677787665322222 2 223 889999
Q ss_pred eeCCCEEEEecCC---------------------------CcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeC
Q 042260 87 QCDGNWMYSGSED---------------------------GTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 87 ~~~~~~l~t~~~d---------------------------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 139 (174)
+|+|+.|+.++.+ ..|.+||+.+......+... .+..++|+|++ .++++..
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEEC
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEec
Confidence 9999988887632 57999999887652223223 77889999999 7777654
Q ss_pred C
Q 042260 140 N 140 (174)
Q Consensus 140 d 140 (174)
+
T Consensus 190 ~ 190 (347)
T 2gop_A 190 R 190 (347)
T ss_dssp C
T ss_pred c
Confidence 4
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.93 E-value=4.2e-07 Score=74.79 Aligned_cols=153 Identities=7% Similarity=0.038 Sum_probs=98.4
Q ss_pred CcEEEEEeeCCCc----------------EEEEECCCCce--eEEeec--CCCCeEEEEEcCCCceEEEe-c-----CCc
Q 042260 4 PSVILATASYDKT----------------IKFWEAKSGRC--YRTIQY--PDSQVNRLEITPNKHYLAAA-G-----NPH 57 (174)
Q Consensus 4 ~~~~l~s~s~D~~----------------v~vwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~-~-----d~~ 57 (174)
+++.|+.++.|+. |++|++.+++. ...+.. +...+....|+|++..++.. . +..
T Consensus 181 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 181 DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence 5566777777766 99999988763 222222 23447789999999876543 2 457
Q ss_pred EEEEEcCC------CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC----CcEEEEeCCCCe---eEEeeccc--CcE
Q 042260 58 IRLFDVNS------SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED----GTVKIWDLRAPV---CQMEYESR--AAV 122 (174)
Q Consensus 58 i~i~d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d----g~v~iwd~~~~~---~~~~~~~~--~~v 122 (174)
+.+||+.+ +.. ....+..+...+.. .++++|+.|+..+.+ +.|.+||+..+. ......+. ..+
T Consensus 261 l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 338 (710)
T 2xdw_A 261 LWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL 338 (710)
T ss_dssp EEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred EEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence 89999875 321 23334445444444 477888877665543 369999998753 12222332 367
Q ss_pred EEEEEccCCCEEEEeeCCCc--EEEEeCCCCcceeecC
Q 042260 123 NTVVLHPNQTELISGDQNGN--IRVWDLTANSCSCELG 158 (174)
Q Consensus 123 ~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~ 158 (174)
..+.+.+++..+++...|+. |.+||+.++....++.
T Consensus 339 ~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred EEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 88899877778888888885 6667876666555544
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.92 E-value=2.8e-08 Score=75.32 Aligned_cols=137 Identities=8% Similarity=0.009 Sum_probs=89.7
Q ss_pred eCCCcEEEEECCCCceeEEeecCCCCeEEEEEcC-CCceEE-EecC------CcEEEEEcCCCCCCCeEEeecC-CCCEE
Q 042260 12 SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITP-NKHYLA-AAGN------PHIRLFDVNSSSPQPVMSYDQH-TNNVM 82 (174)
Q Consensus 12 s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~-~~~d------~~i~i~d~~~~~~~~~~~~~~~-~~~v~ 82 (174)
..+..|++||+.+++..... .+...+..+.|+| ++..++ .+.+ ..|.+||+..+....+. ... ...+.
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~ 241 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK--EHAEGESCT 241 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS--CCCTTEEEE
T ss_pred CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee--ccCCCcccc
Confidence 35567999999988765444 3455688999999 666443 3322 35778887654322221 111 23577
Q ss_pred EEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecccCcEEEEEEcc-CCCEEEEee----------------CC
Q 042260 83 AVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYESRAAVNTVVLHP-NQTELISGD----------------QN 140 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~----------------~d 140 (174)
.+.|+|+|+.|+..+.+ +.|.+||+.+.......... ... ..|+| +++.++.++ .+
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 88999999987776543 44999999876543322222 233 88999 999887654 24
Q ss_pred CcEEEEeCCCCcc
Q 042260 141 GNIRVWDLTANSC 153 (174)
Q Consensus 141 ~~i~iwd~~~~~~ 153 (174)
..|.+||+..+..
T Consensus 320 ~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 320 PFLYVLNTKAKSA 332 (396)
T ss_dssp CEEEEEETTTTBC
T ss_pred CcEEEEecccCce
Confidence 6799999987653
No 195
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.92 E-value=7.6e-08 Score=71.92 Aligned_cols=124 Identities=10% Similarity=0.099 Sum_probs=80.6
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cC------C-cEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GN------P-HIRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d------~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 86 (174)
..|++||+.+++.+..+.. . .+..+.|+|++ +++++ .+ . ...+|.+.+++. ..+..+ ..+...
T Consensus 152 ~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~l~~~-~~~~~~-- 222 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE---EKMFEK-VSFYAV-- 222 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---EEEEEE-ESEEEE--
T ss_pred ceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---EEeccC-cceeeE--
Confidence 5799999998877455544 3 68889999999 65554 22 1 445665543322 222223 444444
Q ss_pred eeCCCEEEEecCC--------CcEEEEeCCCCeeEEee-cccCcEEE-EEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 87 QCDGNWMYSGSED--------GTVKIWDLRAPVCQMEY-ESRAAVNT-VVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 87 ~~~~~~l~t~~~d--------g~v~iwd~~~~~~~~~~-~~~~~v~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
+|+|+.|+.++.+ ..|.+|| +....... .+...+.. +.|+ ++ .+++++.++.++|| +.++.
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence 8999988877644 3688888 33333222 23456775 8999 77 88888999999999 87544
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.84 E-value=8.1e-08 Score=79.47 Aligned_cols=145 Identities=17% Similarity=0.120 Sum_probs=90.5
Q ss_pred CcEEEEEeeCC-----CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCC--------------cEEEEEc
Q 042260 4 PSVILATASYD-----KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNP--------------HIRLFDV 63 (174)
Q Consensus 4 ~~~~l~s~s~D-----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~--------------~i~i~d~ 63 (174)
+++.|+.++.+ .+|++||+.+|+.+.... +...+..++|+|+ ..+ ++..+. .|++|++
T Consensus 173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~l 250 (741)
T 1yr2_A 173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRL 250 (741)
T ss_dssp TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEET
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEEC
Confidence 44455544433 459999999998765321 2222356889999 644 444333 3888898
Q ss_pred CCCCCCCeEEeec--CCCCEEEEEEeeCCCEEEEecCCC-----cEEEEeCCCC--e-eEEeecccCcEEEEEEccCCCE
Q 042260 64 NSSSPQPVMSYDQ--HTNNVMAVGFQCDGNWMYSGSEDG-----TVKIWDLRAP--V-CQMEYESRAAVNTVVLHPNQTE 133 (174)
Q Consensus 64 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~dg-----~v~iwd~~~~--~-~~~~~~~~~~v~~~~~~~~~~~ 133 (174)
.++.......+.. +...+..+.|+++|++|+..+.++ .|.+||+.++ . ..........+.... .|++..
T Consensus 251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~ 329 (741)
T 1yr2_A 251 GTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQ 329 (741)
T ss_dssp TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred CCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCE
Confidence 7654322333333 223588999999999888776543 8999999765 3 222222333333333 478887
Q ss_pred EEEeeC----CCcEEEEeCCCC
Q 042260 134 LISGDQ----NGNIRVWDLTAN 151 (174)
Q Consensus 134 l~s~~~----d~~i~iwd~~~~ 151 (174)
|+..+. ++.|.+||+..+
T Consensus 330 l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 330 LWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEEECTTCTTCEEEEEECSSS
T ss_pred EEEEECCCCCCCEEEEEeCCCC
Confidence 776654 445999999874
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.83 E-value=4.3e-06 Score=60.69 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=100.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.+.++...++.|..||.. ++.. .+. .....+..+++++++.++++.. ++.+..||.. ++. ...........
T Consensus 25 ~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~ 100 (299)
T 2z2n_A 25 KGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSA 100 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCC
T ss_pred CCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCC
Confidence 45566666667889999988 5433 332 2345688999999888777654 6678888875 221 11112223457
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcc
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSC 153 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (174)
+..+++.++++..++...++.|..||........... ....+..+++.++++..++...++.|..||. +++.
T Consensus 101 ~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 173 (299)
T 2z2n_A 101 PYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI 173 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred ceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE
Confidence 8899999999988888888999999984332222222 2356899999999987777766788999998 5443
No 198
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.80 E-value=5.1e-10 Score=85.60 Aligned_cols=152 Identities=8% Similarity=0.050 Sum_probs=80.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCC-CeEE-EEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDS-QVNR-LEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~-~v~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+.++++++.|+.|+.||.++|+.+..+..+.. .+.. ..+..++.+++++.++.++.||..+++.. ..+..+.
T Consensus 49 g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~--w~~~~~~---- 122 (369)
T 2hz6_A 49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQ--QTLSSAF---- 122 (369)
T ss_dssp -CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------
T ss_pred CCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEE--EEecCCC----
Confidence 34677888999999999999987665543211 1100 01112344555566788999999887532 2222221
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCC---CEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ---TELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
...+.+++..++.++.|+.|+.||.++.+....+.... ....++.++. ..+++++.||.|..||.++++..++..+
T Consensus 123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 12344578889999999999999998876554433211 1222333322 5677888999999999999998887664
Q ss_pred ccce
Q 042260 160 QYGL 163 (174)
Q Consensus 160 ~~~~ 163 (174)
...+
T Consensus 202 ~~pv 205 (369)
T 2hz6_A 202 ASPV 205 (369)
T ss_dssp SSCE
T ss_pred CCce
Confidence 4433
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.79 E-value=3.1e-06 Score=62.36 Aligned_cols=161 Identities=12% Similarity=0.114 Sum_probs=103.3
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeec----CCCCeEEEEEcCCCceEEEe-c---------CCcEEEEEcCCCCCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQY----PDSQVNRLEITPNKHYLAAA-G---------NPHIRLFDVNSSSPQP 70 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~-~---------d~~i~i~d~~~~~~~~ 70 (174)
+.++++ . +..|.+||.++++....... ....++.+.++|++.++++. . .....+|.+.....
T Consensus 65 G~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-- 140 (297)
T 3g4e_A 65 GGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-- 140 (297)
T ss_dssp SSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC--
T ss_pred CCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC--
Confidence 444443 3 55789999887765332221 12347889999999877654 2 13356776654321
Q ss_pred eEEeecCCCCEEEEEEeeCCCEE-EEecCCCcEEEEeCC--CCeeE-----Eeec-ccCcEEEEEEccCCCEEEEeeCCC
Q 042260 71 VMSYDQHTNNVMAVGFQCDGNWM-YSGSEDGTVKIWDLR--APVCQ-----MEYE-SRAAVNTVVLHPNQTELISGDQNG 141 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~--~~~~~-----~~~~-~~~~v~~~~~~~~~~~l~s~~~d~ 141 (174)
.............++|+++++.+ ++.+.++.|..||+. ..... ..+. ....+..+++.++++..++...++
T Consensus 141 ~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 141 VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence 22222333456789999999865 666778899999873 33221 1121 234678999999998777777778
Q ss_pred cEEEEeCCCCcceeecCcc-cceeEEEEE
Q 042260 142 NIRVWDLTANSCSCELGLQ-YGLRTFLFY 169 (174)
Q Consensus 142 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~ 169 (174)
.|..||..+++....+..+ ..+....|.
T Consensus 221 ~v~~~d~~tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred EEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence 8999999988888777666 344444443
No 200
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.78 E-value=1.5e-06 Score=64.09 Aligned_cols=143 Identities=10% Similarity=0.154 Sum_probs=95.0
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec--CCCCE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ--HTNNV 81 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~v 81 (174)
.+.++++...++.|..||..+++. ..+. ....+..+++++++.++++. +..+.+||..+++...+..... ....+
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 100 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRF 100 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCC
Confidence 466788888899999999987765 3333 34568999999999877665 5679999987764333222111 12347
Q ss_pred EEEEEeeCCCEEEEecCC---------CcEEEEeCCC-CeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCC
Q 042260 82 MAVGFQCDGNWMYSGSED---------GTVKIWDLRA-PVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLT 149 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~d---------g~v~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~ 149 (174)
..+++.++|++.++...+ ..-.+|.+.. .............+.++|+|+++.|+ +.+.++.|..||+.
T Consensus 101 ~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 101 NDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp EEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred CCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 788999999977765321 2234444432 22222223334568999999998764 55567889999974
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.76 E-value=8.7e-06 Score=59.05 Aligned_cols=143 Identities=8% Similarity=0.008 Sum_probs=98.8
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.+.++...++.|..||.. ++. ..+. .....+..+.+.+++.++++. .++.+..||. +++.. ..........
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~ 142 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSY 142 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCC
T ss_pred CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCC
Confidence 45566776768889999876 332 2332 234468899999988877665 4677888987 43222 1122233456
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-ec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-YE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
+..+++.++++..++...++.|..||. ....... .. ....+..+++.++++..++...++.|..||. ++.
T Consensus 143 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 143 PSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 889999999998888888889999999 4443321 22 2346889999999887776666788999999 544
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.76 E-value=1e-06 Score=64.75 Aligned_cols=135 Identities=9% Similarity=0.148 Sum_probs=88.7
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEc----CCCce-EEE-ecCCcEEEEEcC-CCCCC---CeEEeecCC-CCEEE
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEIT----PNKHY-LAA-AGNPHIRLFDVN-SSSPQ---PVMSYDQHT-NNVMA 83 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~-~~~-~~d~~i~i~d~~-~~~~~---~~~~~~~~~-~~v~~ 83 (174)
+.|..||.. ++...... .......++++ +++.. +++ ..++.|.+||.. .+... ....+..+. .....
T Consensus 153 ~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 230 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG 230 (314)
T ss_dssp EEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred CeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCc
Confidence 456777665 54433222 22346788899 88754 344 356789999975 22211 111222232 55778
Q ss_pred EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCCC
Q 042260 84 VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTAN 151 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~ 151 (174)
++++++|++.++...++.|..||.++......+.. ...+.+++++|+++.|. +...++.|..|++...
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 89999999988888888999999985444333433 36789999999998554 4455678999998853
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.75 E-value=3e-07 Score=67.63 Aligned_cols=143 Identities=9% Similarity=0.077 Sum_probs=95.5
Q ss_pred CcEEEEE-------eeCCCcEEEEECCCCceeEEeec-----CCCCeEEEEEcCC-CceEEEecCCcEEEEEcCCCCCCC
Q 042260 4 PSVILAT-------ASYDKTIKFWEAKSGRCYRTIQY-----PDSQVNRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQP 70 (174)
Q Consensus 4 ~~~~l~s-------~s~D~~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~ 70 (174)
++.++++ +..++.|..||..+++... +.. +...+..+.++++ +.++++.....+..||.. ++...
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~ 105 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEE 105 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEE
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEE
Confidence 3556666 6778999999988776542 222 2346889999998 877776655578889987 43221
Q ss_pred e-EEe--ecCCCCEEEEEEeeCCCEEEEecCC---------------CcEEEEeCCCCeeEEeecccCcEEEEEEc----
Q 042260 71 V-MSY--DQHTNNVMAVGFQCDGNWMYSGSED---------------GTVKIWDLRAPVCQMEYESRAAVNTVVLH---- 128 (174)
Q Consensus 71 ~-~~~--~~~~~~v~~~~~~~~~~~l~t~~~d---------------g~v~iwd~~~~~~~~~~~~~~~v~~~~~~---- 128 (174)
. ... ......+..+++.++|+..++...+ +.|..||.. .............+.++++
T Consensus 106 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d 184 (314)
T 1pjx_A 106 IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMND 184 (314)
T ss_dssp CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTT
T ss_pred EEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccC
Confidence 1 110 0112347789999999988877655 567777765 3333323333456889999
Q ss_pred cCCCEEEE-eeCCCcEEEEeCC
Q 042260 129 PNQTELIS-GDQNGNIRVWDLT 149 (174)
Q Consensus 129 ~~~~~l~s-~~~d~~i~iwd~~ 149 (174)
|+++.+.. ...++.|.+||+.
T Consensus 185 ~dg~~l~v~~~~~~~i~~~~~~ 206 (314)
T 1pjx_A 185 GRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp SCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEECC
Confidence 98876554 4567899999986
No 204
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.75 E-value=1.6e-06 Score=64.87 Aligned_cols=140 Identities=11% Similarity=0.031 Sum_probs=94.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeec--CCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ--HTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~v~ 82 (174)
+.++++...++.|..||.++++.. .+.. ...+.++.+++++.++++. ...+.+||..+++...+..... ....+.
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~ 137 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSN 137 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCC
Confidence 567788888899999998877543 3332 3568899999999888776 4458999987764332211111 123578
Q ss_pred EEEEeeCCCEEEEecC------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCC
Q 042260 83 AVGFQCDGNWMYSGSE------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLT 149 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~ 149 (174)
.+.++++|++.++... .+.|..+| ..............+.++|+|+++.+. +.+.++.|.+||+.
T Consensus 138 ~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 138 DGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 8999999997776542 24555555 343332222234568999999998765 44557889999986
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.73 E-value=1.4e-05 Score=57.98 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=98.7
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.+.++...++.|.+||.. ++... +.. ....+..+.+.+++.++++.. ++.+..+|.. ++.. ..........
T Consensus 30 ~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~ 105 (300)
T 2qc5_A 30 DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSG 105 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCC
T ss_pred CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCC
Confidence 45567777678899999987 55432 322 235688999999888776654 5678888876 4321 1222223467
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE-Eeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ-MEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
+..+++.++++..++...++.|..+|.. .... .... ....+..+++.++++..++...++.|..+|..
T Consensus 106 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 175 (300)
T 2qc5_A 106 PYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT 175 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred CccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 8899999999998888878899999987 3333 2222 23568999999999966666667889999983
No 206
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.72 E-value=3.2e-06 Score=68.18 Aligned_cols=145 Identities=11% Similarity=0.164 Sum_probs=95.9
Q ss_pred CCcEEEEEeeCCCcEEEEECC--CCceeEEeecCCCCeEEEEEc----CCCceEEEe--cCCcEEEEEcCCCCCCCeEEe
Q 042260 3 QPSVILATASYDKTIKFWEAK--SGRCYRTIQYPDSQVNRLEIT----PNKHYLAAA--GNPHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~ 74 (174)
.+++++.+++.|+.|.+||+. +++.+..+.... ....++++ |++++++.+ .++.+.++|..+.+.......
T Consensus 206 pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 206 ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 284 (567)
T ss_dssp TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence 356778888999999999995 788888777543 46789999 688766544 467899999765432111100
Q ss_pred ec--------------------C---------------------------------CCCEEEEEEeeCCCEEEEe-cCCC
Q 042260 75 DQ--------------------H---------------------------------TNNVMAVGFQCDGNWMYSG-SEDG 100 (174)
Q Consensus 75 ~~--------------------~---------------------------------~~~v~~~~~~~~~~~l~t~-~~dg 100 (174)
.. | ........|++++++++.+ ..++
T Consensus 285 ~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn 364 (567)
T 1qks_A 285 RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN 364 (567)
T ss_dssp CEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred cccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCC
Confidence 00 0 0122355788999986554 4678
Q ss_pred cEEEEeCCCCeeEEeecc-c------CcEEEEEEccCCCEE-EEee-CCCcEEEEeCCC
Q 042260 101 TVKIWDLRAPVCQMEYES-R------AAVNTVVLHPNQTEL-ISGD-QNGNIRVWDLTA 150 (174)
Q Consensus 101 ~v~iwd~~~~~~~~~~~~-~------~~v~~~~~~~~~~~l-~s~~-~d~~i~iwd~~~ 150 (174)
.|.++|+.+.+....... . ..++ .++|++..+ +++. .+++|.++|..+
T Consensus 365 ~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~--~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 365 KLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--FVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEEETTTTEEEEEEECSSSSBCCTTCEE--EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred eEEEEECCCCcEEEEEeccCcCCCCcccee--eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 999999998876655433 1 1222 267875554 4443 468999999987
No 207
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.66 E-value=2.4e-06 Score=70.17 Aligned_cols=142 Identities=8% Similarity=-0.056 Sum_probs=89.8
Q ss_pred CCcEEEEEeeCCCc-------------EEEEECCCCce--eEEee--cCCCCeEEEEEcCCCceEEE-ecCC----cEEE
Q 042260 3 QPSVILATASYDKT-------------IKFWEAKSGRC--YRTIQ--YPDSQVNRLEITPNKHYLAA-AGNP----HIRL 60 (174)
Q Consensus 3 ~~~~~l~s~s~D~~-------------v~vwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~-~~d~----~i~i 60 (174)
.+++.|+.++.|.. |++|++.+++. ...+. .+...+..+.|+|++..++. +.++ .+.+
T Consensus 177 pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 177 PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 35667888888776 99999998763 22222 23346788999999886654 3333 4555
Q ss_pred EEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEec---CCCcEEEEeCCCCee---EEeecc--cCcEEEEEEccCCC
Q 042260 61 FDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGS---EDGTVKIWDLRAPVC---QMEYES--RAAVNTVVLHPNQT 132 (174)
Q Consensus 61 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~---~dg~v~iwd~~~~~~---~~~~~~--~~~v~~~~~~~~~~ 132 (174)
++..++.. ..+..+...+....+ ++|++++.+. .++.|.+||+.++.. ...+.+ ...+..++++ ++.
T Consensus 257 ~~~~~~~~---~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 257 KRPGEKDF---RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp ECTTCSSC---EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred EcCCCCce---EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence 55443322 223334445555555 5666444444 357899999976542 222222 4457888887 667
Q ss_pred EEEEeeCCCcEEEEeCC
Q 042260 133 ELISGDQNGNIRVWDLT 149 (174)
Q Consensus 133 ~l~s~~~d~~i~iwd~~ 149 (174)
.+++...|+..+||.+.
T Consensus 332 lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 332 LSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEe
Confidence 78888899988888665
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.66 E-value=3.1e-05 Score=56.14 Aligned_cols=142 Identities=11% Similarity=0.010 Sum_probs=96.8
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.+.++...++.|..||.. ++.. .+.. ....+..+.+.+++.++++.. ++.+..+|.. ++.. ..........
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~ 147 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSY 147 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCC
T ss_pred CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCC
Confidence 35566666667889999987 5542 3322 235688999998888776654 6678888875 3222 1222223456
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
...+++.++++..++...++.|..+|.......... .....+..+++.++++..++...++.|..||..
T Consensus 148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 148 PAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred ceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 889999999998888877889999998433222211 123468899999998877766667789999983
No 209
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.66 E-value=1.8e-06 Score=66.31 Aligned_cols=142 Identities=11% Similarity=0.090 Sum_probs=96.2
Q ss_pred cEEEEEeeC----CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCCC
Q 042260 5 SVILATASY----DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSPQ 69 (174)
Q Consensus 5 ~~~l~s~s~----D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~ 69 (174)
..++++-.. +++|.+.|..+++.+..+.....+ . +.++|+++.+..+. ++.+.+||..+.+..
T Consensus 45 ~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~ 122 (386)
T 3sjl_D 45 RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT 122 (386)
T ss_dssp TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE
Confidence 344555443 679999999999999988865554 4 99999988665432 457999999876432
Q ss_pred CeEEeec-C----CCCEEEEEEeeCCCEEEEecC--CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCc
Q 042260 70 PVMSYDQ-H----TNNVMAVGFQCDGNWMYSGSE--DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGN 142 (174)
Q Consensus 70 ~~~~~~~-~----~~~v~~~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 142 (174)
....... . ......++++++|++++.+.. ++.|.++|+.+.+.+.++..... ...+....+.+++.+.||.
T Consensus 123 ~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~ 200 (386)
T 3sjl_D 123 ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGS 200 (386)
T ss_dssp EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSC
T ss_pred EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCC
Confidence 2221111 0 123556889999998887653 68999999999988877754332 1222223345667777888
Q ss_pred EEEEeCCC
Q 042260 143 IRVWDLTA 150 (174)
Q Consensus 143 i~iwd~~~ 150 (174)
+...++.+
T Consensus 201 ~~~v~~~~ 208 (386)
T 3sjl_D 201 LAKVAFGT 208 (386)
T ss_dssp EEEEECCS
T ss_pred EEEEECCC
Confidence 88888775
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.65 E-value=2.1e-06 Score=63.42 Aligned_cols=142 Identities=12% Similarity=0.160 Sum_probs=95.5
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEE-eec-CCCCEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMS-YDQ-HTNNVM 82 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~-~~~-~~~~v~ 82 (174)
.+++++..++.|..|+. +++ ...+..+...+..+.+++++.++++. .++.|..|+.. ++...+.. ... ....+.
T Consensus 58 ~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 58 TLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp EEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred EEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence 47888888999999987 444 34455555678999999999877765 34678888875 33221111 111 113456
Q ss_pred EEEEeeCCCEEEE----ecC-------------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC-----
Q 042260 83 AVGFQCDGNWMYS----GSE-------------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN----- 140 (174)
Q Consensus 83 ~~~~~~~~~~l~t----~~~-------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----- 140 (174)
.+++.++|+..+| |.. .+.|..+|..+....... .....+.++|+|+++.|+.+...
T Consensus 135 ~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~ 213 (305)
T 3dr2_A 135 DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHG 213 (305)
T ss_dssp CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---C
T ss_pred CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCC
Confidence 7889999998887 332 256777887554433322 33456889999999977766554
Q ss_pred -CcEEEEeCCCC
Q 042260 141 -GNIRVWDLTAN 151 (174)
Q Consensus 141 -~~i~iwd~~~~ 151 (174)
+.|..||+...
T Consensus 214 ~~~i~~~~~~~~ 225 (305)
T 3dr2_A 214 SVEITAFAWRDG 225 (305)
T ss_dssp CCEEEEEEEETT
T ss_pred CCEEEEEEecCC
Confidence 68999998754
No 211
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.64 E-value=6.7e-06 Score=59.84 Aligned_cols=148 Identities=5% Similarity=-0.065 Sum_probs=100.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCC-CeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDS-QVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
.+.+..+.+.++.|+++|+++++.+..+ .... ...++....+..++++..++.+.+||..+.+. +..+... ..-.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~--~~ti~~~-~eGw 139 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR--ERTTRYS-GEGW 139 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE--EEEEECS-SCCC
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE--EEEEeCC-Ccee
Confidence 3577889999999999999999998887 4432 23556666554444445678899999987643 3333322 2223
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc------CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR------AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
.++ ++++.++.+..++.|.++|..+.+...++.-. ..++.+.+. ++...+..-.+..|.+-|.++++....
T Consensus 140 GLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 140 GLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp CEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred EEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence 333 46777777667889999999987776655431 245777776 565444443577899999999988755
Q ss_pred cC
Q 042260 157 LG 158 (174)
Q Consensus 157 ~~ 158 (174)
+.
T Consensus 217 Id 218 (268)
T 3nok_A 217 ID 218 (268)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.63 E-value=2.3e-05 Score=59.84 Aligned_cols=160 Identities=8% Similarity=0.026 Sum_probs=99.3
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEee-----cCCCCe-EEEEEcCC-CceEEEecCCcEEEEEcCCCCCCCeEEeec---
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQ-----YPDSQV-NRLEITPN-KHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ--- 76 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~-----~~~~~v-~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--- 76 (174)
.+++.+.|+++.++|. +++...... ....++ ....+.+. +.++..+..+.+.+.|...........+..
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~ 257 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG 257 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC
Confidence 3455667788888888 666553222 111111 12233333 333444455677788876543221111111
Q ss_pred -------CCCCEEEEEEeeCCCEEEEecC----------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEee
Q 042260 77 -------HTNNVMAVGFQCDGNWMYSGSE----------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGD 138 (174)
Q Consensus 77 -------~~~~v~~~~~~~~~~~l~t~~~----------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~ 138 (174)
.......++++++++.++.... ++.|.+.|+.+.+.+.++........++|+|+++ .++++.
T Consensus 258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence 0122334678888887666543 3579999999998888887777789999999999 677766
Q ss_pred -CCCcEEEEeCCCCcceee-cCcccceeEEE
Q 042260 139 -QNGNIRVWDLTANSCSCE-LGLQYGLRTFL 167 (174)
Q Consensus 139 -~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~ 167 (174)
.++.|.++|..+.+.... ......+..++
T Consensus 338 ~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~ 368 (373)
T 2mad_H 338 AGTEVLHIYDAGAGDQDQSTVELGSGPQVLS 368 (373)
T ss_pred CCCCeEEEEECCCCCEEeeecCCCCCCcEEE
Confidence 488999999999988877 44444444443
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.60 E-value=5.5e-06 Score=64.09 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=95.9
Q ss_pred cEEEEEeeCCC--cEEEEECCCCceeEEe----ecCCCCeEEEEEcC-CCceEEEecCCcEEEEEcCCCCCCCeEE--ee
Q 042260 5 SVILATASYDK--TIKFWEAKSGRCYRTI----QYPDSQVNRLEITP-NKHYLAAAGNPHIRLFDVNSSSPQPVMS--YD 75 (174)
Q Consensus 5 ~~~l~s~s~D~--~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~ 75 (174)
+..|+.+..++ .|.+++..++.....+ ......+.+++++| ++.++++..++.|+.||..++....... ..
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 34566666655 7888887766543333 21334577899999 5666665556779999987653211110 11
Q ss_pred cCCCCE--EEEEEee-CCCEEEEecCCCcEEEEeCCCCeeEEeeccc---------------CcEEEEEEccCCCEEEEe
Q 042260 76 QHTNNV--MAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEYESR---------------AAVNTVVLHPNQTELISG 137 (174)
Q Consensus 76 ~~~~~v--~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~s~ 137 (174)
...... ..+++++ ++.++++...++.|+.||...... ...... .....++++|+++..++-
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad 340 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD 340 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence 111112 3899999 577777778889999999875422 111111 347899999999977777
Q ss_pred e-CCCcEEEEeCCCCc
Q 042260 138 D-QNGNIRVWDLTANS 152 (174)
Q Consensus 138 ~-~d~~i~iwd~~~~~ 152 (174)
. .++.|+.||+.++.
T Consensus 341 ~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 341 GFKGYCLRKLDILDGY 356 (409)
T ss_dssp TTTTCEEEEEETTTTE
T ss_pred CCCCCEEEEEECCCCE
Confidence 7 78899999977664
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.57 E-value=7.2e-05 Score=55.79 Aligned_cols=152 Identities=10% Similarity=0.060 Sum_probs=93.6
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecC----CCCeEEEEEcCCCceEEEecC-----CcEEEEEcCCCCCCCeEEe
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP----DSQVNRLEITPNKHYLAAAGN-----PHIRLFDVNSSSPQPVMSY 74 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~ 74 (174)
++.++++. .+ .|.+||.++++........ ...+..+.+++++.++++..+ ....+|.+.+++ ...+
T Consensus 100 dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~---~~~~ 174 (326)
T 2ghs_A 100 DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK---VTKL 174 (326)
T ss_dssp TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE---EEEE
T ss_pred CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc---EEEe
Confidence 45555544 34 4999999887754322211 235788999999887765431 223444443332 1122
Q ss_pred ecCCCCEEEEEEeeCCCEE-EEecCCCcEEEEeCC--CC-e-----eEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEE
Q 042260 75 DQHTNNVMAVGFQCDGNWM-YSGSEDGTVKIWDLR--AP-V-----CQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIR 144 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l-~t~~~dg~v~iwd~~--~~-~-----~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~ 144 (174)
.........++|+++++.+ ++.+.++.|.+||+. +. . ....+. ....+..+++.++++..++...++.|.
T Consensus 175 ~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 175 FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEE
Confidence 2233456788999999865 555667899999985 33 2 111221 234568899999998777666677899
Q ss_pred EEeCCCCcceeecCccc
Q 042260 145 VWDLTANSCSCELGLQY 161 (174)
Q Consensus 145 iwd~~~~~~~~~~~~~~ 161 (174)
.||. +++....+..+.
T Consensus 255 ~~d~-~g~~~~~i~~~~ 270 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG 270 (326)
T ss_dssp EECT-TCCEEEEEECSC
T ss_pred EECC-CCCEEEEEECCC
Confidence 9998 455555554443
No 215
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.55 E-value=3.5e-06 Score=69.43 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=50.7
Q ss_pred CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 99 DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 99 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
+|.++.||+++.+....+....++..-.+...+..|+.|+.|+.++.||.++++.++++.++.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 378999999999887776655544444556678899999999999999999999998876553
No 216
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.53 E-value=3e-05 Score=59.25 Aligned_cols=132 Identities=11% Similarity=-0.003 Sum_probs=90.4
Q ss_pred cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCCCCeEEee--cC---CC
Q 042260 16 TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSPQPVMSYD--QH---TN 79 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~--~~---~~ 79 (174)
+|.++|..+++.+..+.....+ .+.++|+++.+..+. ++.+.++|..+.+........ .. ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence 8999999999988877654433 899999998776652 466899998765322211111 00 12
Q ss_pred CEEEEEEeeCCCEEEEecC--CCcEEEEeCCCCeeEEe-ecccCcEEEEEEccCCC-EEEEeeCCCcEEEEeCCCCcce
Q 042260 80 NVMAVGFQCDGNWMYSGSE--DGTVKIWDLRAPVCQME-YESRAAVNTVVLHPNQT-ELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
....+.++|+|++++.+.. ++.|.++| .+.+...+ +..... +.+.|+++ .+++.+.||.+..+|. ++...
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 3457899999999888764 57899999 98877766 544332 34556553 4556677888999988 65544
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.52 E-value=4.9e-06 Score=64.37 Aligned_cols=144 Identities=8% Similarity=0.069 Sum_probs=93.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-cCC--cEEEEEcCCCCCCCeEEe----ec
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNP--HIRLFDVNSSSPQPVMSY----DQ 76 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~--~i~i~d~~~~~~~~~~~~----~~ 76 (174)
++.++++...++.|+.||..+++........ .... ++|++++..++.+ .++ .+..++...+.. .... ..
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--~~~~g~~~~~ 216 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--PTRIGQLGST 216 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--EEEEEECCTT
T ss_pred CCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce--eEEeeeccch
Confidence 4667888888899999999887665444432 2234 8899988765554 333 677788754422 1122 11
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe----ecccC---cEEEEEEccC-CCEEEEeeCCCcEEEEeC
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME----YESRA---AVNTVVLHPN-QTELISGDQNGNIRVWDL 148 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~----~~~~~---~v~~~~~~~~-~~~l~s~~~d~~i~iwd~ 148 (174)
......++++++++..|+.+..++.|+.||......... ..... +.+.++++|+ +..+++-..++.|+.||.
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~ 296 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP 296 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence 345677889998544555577788999999986653322 11111 1238999995 555566667888999997
Q ss_pred CCC
Q 042260 149 TAN 151 (174)
Q Consensus 149 ~~~ 151 (174)
...
T Consensus 297 ~g~ 299 (409)
T 3hrp_A 297 DGE 299 (409)
T ss_dssp TCC
T ss_pred CCC
Confidence 753
No 218
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.52 E-value=1.3e-05 Score=58.27 Aligned_cols=149 Identities=9% Similarity=0.060 Sum_probs=98.0
Q ss_pred CcEEEEEeeCCC--cEEEEECCCCceeEEeecCCCC-eEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDK--TIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~--~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.+..+++.+| +|+.+|+++|+.+..+...... -.++....+..++++..++.+.++|..+.+. +..+....
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~--~~ti~~~~-- 127 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ--VRSFNYDG-- 127 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE--EEEEECSS--
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE--EEEEECCC--
Confidence 356778888776 8999999999999888765432 2456555443334444577899999987643 33333221
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc---c---CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---R---AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~---~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
...+..++++.++.+..++.|.++|..+.+...++.- . ..++.+.+. ++...+..-.+..|.+.|.++++..
T Consensus 128 -eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 128 -EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp -CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred -CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE
Confidence 2223335666666665678899999998776655432 1 335667776 5654444435778999999999887
Q ss_pred eecC
Q 042260 155 CELG 158 (174)
Q Consensus 155 ~~~~ 158 (174)
..+.
T Consensus 206 ~~Id 209 (262)
T 3nol_A 206 GIID 209 (262)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 219
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.50 E-value=4.4e-06 Score=64.18 Aligned_cols=128 Identities=9% Similarity=0.078 Sum_probs=89.5
Q ss_pred CCCceEEEecCCcEEEEEcCCCCCCCeEEee---------c-CCCCEEEEEEeeCCCEEEEecC----------CCcEEE
Q 042260 45 PNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---------Q-HTNNVMAVGFQCDGNWMYSGSE----------DGTVKI 104 (174)
Q Consensus 45 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---------~-~~~~v~~~~~~~~~~~l~t~~~----------dg~v~i 104 (174)
+++.++..+.++.+.+.|..+.......... + .......++++++++.++-... .+.|-+
T Consensus 236 ~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v 315 (386)
T 3sjl_D 236 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 315 (386)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence 4555555555677888887654322111111 0 0112224566777776655432 357999
Q ss_pred EeCCCCeeEEeecccCcEEEEEEccCCC-EEEEe-eCCCcEEEEeCCCCcceeecCcccceeEEEEEeecC
Q 042260 105 WDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISG-DQNGNIRVWDLTANSCSCELGLQYGLRTFLFYHQDM 173 (174)
Q Consensus 105 wd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (174)
.|+++.+.+.++....++..++++|+++ .|++. ..++.|.++|..+.+...++..+.+..++++- +||
T Consensus 316 iD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s-~d~ 385 (386)
T 3sjl_D 316 LDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT-ADM 385 (386)
T ss_dssp EETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEE-CCC
T ss_pred EECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEEC-CcC
Confidence 9999999988888777899999999986 66654 45889999999999999999999999988774 345
No 220
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.44 E-value=4.8e-05 Score=55.52 Aligned_cols=149 Identities=11% Similarity=0.076 Sum_probs=97.9
Q ss_pred cEEEEEeeC--CCcEEEEECCCCceeEEeecCCC-CeEEEEEcCCCceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 5 SVILATASY--DKTIKFWEAKSGRCYRTIQYPDS-QVNRLEITPNKHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 5 ~~~l~s~s~--D~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
+.+.++.+. +++|++.|+.+++.+..+..... ....+.+..+ .+.++ -.++.+.++|..+.+. +..+......
T Consensus 32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~-~lyv~t~~~~~v~viD~~t~~v--~~~i~~g~~~ 108 (266)
T 2iwa_A 32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE-KLYQVVWLKNIGFIYDRRTLSN--IKNFTHQMKD 108 (266)
T ss_dssp TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT-EEEEEETTCSEEEEEETTTTEE--EEEEECCSSS
T ss_pred CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC-EEEEEEecCCEEEEEECCCCcE--EEEEECCCCC
Confidence 566666654 67899999999999988865432 3445666543 33333 3577899999987643 3333221111
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc------CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR------AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
.....++|+.++.+..++.+.+.|..+.+....+.-. ..++.+.+. ++...+..-.++.|.+-|..+++..
T Consensus 109 --g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~ 185 (266)
T 2iwa_A 109 --GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL 185 (266)
T ss_dssp --CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE
T ss_pred --eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE
Confidence 2334556776666667889999999987766555422 136788887 5644444445779999999999887
Q ss_pred eecCc
Q 042260 155 CELGL 159 (174)
Q Consensus 155 ~~~~~ 159 (174)
..+.+
T Consensus 186 ~~I~~ 190 (266)
T 2iwa_A 186 GWILL 190 (266)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 76654
No 221
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.42 E-value=5.7e-05 Score=62.50 Aligned_cols=140 Identities=9% Similarity=0.104 Sum_probs=84.2
Q ss_pred EEEEECCCCce--eEEeecCC--CCeEEEEEcCCCceEEE-ecC-----CcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260 17 IKFWEAKSGRC--YRTIQYPD--SQVNRLEITPNKHYLAA-AGN-----PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 17 v~vwd~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~~~~-~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 86 (174)
|++|++.+++. ...+.... ..+..+.|+|++..++. +.+ ..+.+||+.++.......+..+........
T Consensus 245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~- 323 (741)
T 1yr2_A 245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV- 323 (741)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-
T ss_pred EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-
Confidence 89999987763 22233222 34788999999976553 332 368999987651110222333333344433
Q ss_pred eeCCCEEEEecCC----CcEEEEeCCCC--eeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC-CCcceeecC
Q 042260 87 QCDGNWMYSGSED----GTVKIWDLRAP--VCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT-ANSCSCELG 158 (174)
Q Consensus 87 ~~~~~~l~t~~~d----g~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~ 158 (174)
.++|+.|+..+.+ +.|.+||+..+ .....+. ....+..+.+. ++..+++...|+..+||.+. ++....++.
T Consensus 324 ~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~ 402 (741)
T 1yr2_A 324 DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS 402 (741)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc
Confidence 4788887776653 45999999874 3333333 33446677776 55677888889987777665 344444433
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.41 E-value=4.4e-05 Score=57.72 Aligned_cols=146 Identities=6% Similarity=0.056 Sum_probs=93.2
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecC---------CCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYP---------DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH 77 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 77 (174)
.+..++.++.|..+|.++|+.+-..... ...+.......++.+++++.++.+..+|..+++.. -.....
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~--W~~~~~ 132 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVA--WQTKVA 132 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE--EEEECS
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEE--EEEeCC
Confidence 4667778899999999999987666542 12233322223556677777888999999877432 222221
Q ss_pred CCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEE------EEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 78 TNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN------TVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
......... .+..++.++.++.+..+|.++.+....+....++. .... .+..++.++.++.+..+|.+++
T Consensus 133 ~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 133 GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTC
T ss_pred CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCC
Confidence 111111111 24577778889999999998887766554433221 1122 2456778888999999999999
Q ss_pred cceeecC
Q 042260 152 SCSCELG 158 (174)
Q Consensus 152 ~~~~~~~ 158 (174)
+..++..
T Consensus 209 ~~~w~~~ 215 (376)
T 3q7m_A 209 QMIWQQR 215 (376)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 8876654
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.41 E-value=1.1e-05 Score=60.55 Aligned_cols=147 Identities=10% Similarity=0.166 Sum_probs=91.8
Q ss_pred CcEEEEEeeC-----CCcEEEEECCCCceeEEeecC------CCCeEEEEEcCC-CceEEE-e---cCCcEEEEEcCCCC
Q 042260 4 PSVILATASY-----DKTIKFWEAKSGRCYRTIQYP------DSQVNRLEITPN-KHYLAA-A---GNPHIRLFDVNSSS 67 (174)
Q Consensus 4 ~~~~l~s~s~-----D~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~-~~~~~~-~---~d~~i~i~d~~~~~ 67 (174)
++.+.++-.. ++.|.+||+++++.+..+..+ ......+++++. +.++++ . .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 3555555433 578999999999877766543 134688999875 444343 3 46789999987553
Q ss_pred CCCeEEeecC-----------------------------CCCEEEEEEeeCCCEEEEecCCC-cEEEEeCC---CCee--
Q 042260 68 PQPVMSYDQH-----------------------------TNNVMAVGFQCDGNWMYSGSEDG-TVKIWDLR---APVC-- 112 (174)
Q Consensus 68 ~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~t~~~dg-~v~iwd~~---~~~~-- 112 (174)
.. .....| ......++++++++.++.+..++ .+..++.. ....
T Consensus 157 ~~--r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~ 234 (343)
T 2qe8_A 157 AA--RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD 234 (343)
T ss_dssp EE--EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH
T ss_pred EE--EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh
Confidence 21 111110 12357899999999888776665 44433321 1100
Q ss_pred ------EEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 113 ------QMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 113 ------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
............++++++++..++...++.|..||.++++
T Consensus 235 ~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 235 AELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp HHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred hhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 0111122345678999999988888888999999994443
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.41 E-value=7e-06 Score=67.50 Aligned_cols=140 Identities=9% Similarity=0.093 Sum_probs=83.4
Q ss_pred eeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEecCC-------------cEEEEEcCCCCCCCeEEeec
Q 042260 11 ASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAAGNP-------------HIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 11 ~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~-------------~i~i~d~~~~~~~~~~~~~~ 76 (174)
|+.+.+|++||+++|+.+.... +......++|+ ++..| .+..+. .|++|++.++.......+..
T Consensus 151 G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~ 228 (693)
T 3iuj_A 151 GSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA 228 (693)
T ss_dssp SCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC
T ss_pred CCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec
Confidence 4444679999999998654321 11113457788 77644 444442 38889987664333333332
Q ss_pred ---CCCCEEEEEEeeCCCEEEEec----CCCcEEEEeCCCC--eeEEeecccCcEEEEEEccCCCEE-EEeeC---CCcE
Q 042260 77 ---HTNNVMAVGFQCDGNWMYSGS----EDGTVKIWDLRAP--VCQMEYESRAAVNTVVLHPNQTEL-ISGDQ---NGNI 143 (174)
Q Consensus 77 ---~~~~v~~~~~~~~~~~l~t~~----~dg~v~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~---d~~i 143 (174)
+......+.++++|++++... .+..+.++|+..+ ............... +.+++..| +.... ++.|
T Consensus 229 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l 307 (693)
T 3iuj_A 229 IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRL 307 (693)
T ss_dssp SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEE
T ss_pred CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEE
Confidence 334578889999999875432 2358999998765 222222222333333 45555544 44433 3679
Q ss_pred EEEeCCCCcc
Q 042260 144 RVWDLTANSC 153 (174)
Q Consensus 144 ~iwd~~~~~~ 153 (174)
..+|+.++.+
T Consensus 308 ~~~d~~~~~~ 317 (693)
T 3iuj_A 308 VTVDAANPGP 317 (693)
T ss_dssp EEEETTSCCG
T ss_pred EEEeCCCCCc
Confidence 9999987654
No 225
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.38 E-value=7e-05 Score=53.84 Aligned_cols=148 Identities=10% Similarity=0.078 Sum_probs=96.0
Q ss_pred cEEEEEeeCCC--cEEEEECCCCceeEEeecCCCC-eEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASYDK--TIKFWEAKSGRCYRTIQYPDSQ-VNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~--~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+.+..+.+.+| +|+.+|+++|+.+..+...... -.++....+..+.++..++.+.++|..+.+. +..+... ..-
T Consensus 31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~--~~ti~~~-~~G 107 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP--RARFRYP-GEG 107 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE--EEEEECS-SCC
T ss_pred CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE--EEEEeCC-CCc
Confidence 56777777764 8999999999999988765432 2455555433334444578899999987643 3333322 222
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc------CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCccee
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR------AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSC 155 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 155 (174)
..++ .+++.++.+..++.|.++|..+.+...++.-. ..++.+.+. ++...+..-.+..|.+.|.++++...
T Consensus 108 wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 108 WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA 184 (243)
T ss_dssp CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE
Confidence 3443 45565555556889999999987766555431 345667765 55544444356689999999998775
Q ss_pred ecC
Q 042260 156 ELG 158 (174)
Q Consensus 156 ~~~ 158 (174)
.+.
T Consensus 185 ~id 187 (243)
T 3mbr_X 185 WID 187 (243)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 226
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.36 E-value=2.6e-05 Score=60.95 Aligned_cols=144 Identities=15% Similarity=0.206 Sum_probs=95.1
Q ss_pred cEEEEEeeCCCcEEEEECCCC----ceeEEee-------cCCCCeEEEEEcCCCceEEEecC------CcEEEEEcCCCC
Q 042260 5 SVILATASYDKTIKFWEAKSG----RCYRTIQ-------YPDSQVNRLEITPNKHYLAAAGN------PHIRLFDVNSSS 67 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~ 67 (174)
..+++++..+.+|.++|+.+. +.+..+. .....-..+...|++.+++..++ +.+.+.|..+.+
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 467889999999999998755 4455552 11123456778899844444444 578899987764
Q ss_pred CCCeEEeecC--C-CCEEEEEEeeCCCEEEEec-------------------CCCcEEEEeCCCCeeEEeeccc---CcE
Q 042260 68 PQPVMSYDQH--T-NNVMAVGFQCDGNWMYSGS-------------------EDGTVKIWDLRAPVCQMEYESR---AAV 122 (174)
Q Consensus 68 ~~~~~~~~~~--~-~~v~~~~~~~~~~~l~t~~-------------------~dg~v~iwd~~~~~~~~~~~~~---~~v 122 (174)
. +..+... . ..--.+.|+++++.+++.. .+.+|.+||+.+.+...++... ...
T Consensus 176 v--~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P 253 (462)
T 2ece_A 176 P--LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMA 253 (462)
T ss_dssp E--EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEE
T ss_pred E--EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcc
Confidence 3 3333211 1 1122467799999988885 3689999999988776666553 344
Q ss_pred EEEEE--ccCCCEEEEeeC------CCcEEEEeCCC
Q 042260 123 NTVVL--HPNQTELISGDQ------NGNIRVWDLTA 150 (174)
Q Consensus 123 ~~~~~--~~~~~~l~s~~~------d~~i~iwd~~~ 150 (174)
..+.| +|+++.+.++++ +++|.+|....
T Consensus 254 ~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 55555 999998877664 55776655543
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.34 E-value=1.9e-05 Score=61.64 Aligned_cols=142 Identities=10% Similarity=0.053 Sum_probs=94.3
Q ss_pred EEEEeeCC------CcEEEEECCCCceeEEeecCC---CCeEEEEEcCCCceEEEec--------------------CCc
Q 042260 7 ILATASYD------KTIKFWEAKSGRCYRTIQYPD---SQVNRLEITPNKHYLAAAG--------------------NPH 57 (174)
Q Consensus 7 ~l~s~s~D------~~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~--------------------d~~ 57 (174)
+++++..+ +.+.+.|.++++.+..+.... ..-..+.|+|++..++++. ++.
T Consensus 150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~ 229 (462)
T 2ece_A 150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR 229 (462)
T ss_dssp EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence 66776666 789999999999998886432 2234688899888777663 678
Q ss_pred EEEEEcCCCCCCCeEEeecC--CCCEEEEEE--eeCCCEEEEec------CCCcEEEEeCCCCeeE--Ee--ecc-----
Q 042260 58 IRLFDVNSSSPQPVMSYDQH--TNNVMAVGF--QCDGNWMYSGS------EDGTVKIWDLRAPVCQ--ME--YES----- 118 (174)
Q Consensus 58 i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~l~t~~------~dg~v~iwd~~~~~~~--~~--~~~----- 118 (174)
|.+||+.+.+ ....+... ......+.| +|++++.+.++ .+++|.+|........ .. ...
T Consensus 230 V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~ 307 (462)
T 2ece_A 230 IHFWDLRKRK--RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEG 307 (462)
T ss_dssp EEEEETTTTE--EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCS
T ss_pred EEEEECCCCc--EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccc
Confidence 9999998752 23333321 123445555 88999877666 4567766554332110 00 000
Q ss_pred ------------cCcEEEEEEccCCCEEEEeeC-CCcEEEEeCCC
Q 042260 119 ------------RAAVNTVVLHPNQTELISGDQ-NGNIRVWDLTA 150 (174)
Q Consensus 119 ------------~~~v~~~~~~~~~~~l~s~~~-d~~i~iwd~~~ 150 (174)
...+..+.++|++++|.++.. .+.|.++|+..
T Consensus 308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 234688999999999887654 67899999973
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.32 E-value=5.1e-05 Score=59.08 Aligned_cols=139 Identities=11% Similarity=0.068 Sum_probs=91.4
Q ss_pred cEEEEEeeCC----CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe-----------cCCcEEEEEcCCCCCC
Q 042260 5 SVILATASYD----KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA-----------GNPHIRLFDVNSSSPQ 69 (174)
Q Consensus 5 ~~~l~s~s~D----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~d~~i~i~d~~~~~~~ 69 (174)
..+.++...+ ++|.+.|..+++.+..+.....+ .+.++|+++.+..+ .++.|.++|..+.+..
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv 162 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI 162 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence 4455665544 79999999999999999876655 89999998865543 2457999999876432
Q ss_pred CeEEeecC-----CCCEEEEEEeeCCCEEEEecC--CCcEEEEeCCCCeeEEeecccCcEEEEEEccCC-CEEEEeeCCC
Q 042260 70 PVMSYDQH-----TNNVMAVGFQCDGNWMYSGSE--DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQ-TELISGDQNG 141 (174)
Q Consensus 70 ~~~~~~~~-----~~~v~~~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~ 141 (174)
........ ......+.++++|++++.+.. ++.|.+.|+.+.+.+.++..... ....|.+ +.+++.+.||
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTS
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCC
Confidence 22222100 123456789999999888764 57899999999888776654332 1222322 3334444555
Q ss_pred cEEEEeC
Q 042260 142 NIRVWDL 148 (174)
Q Consensus 142 ~i~iwd~ 148 (174)
.+...+.
T Consensus 240 ~~~~V~~ 246 (426)
T 3c75_H 240 SLARVDF 246 (426)
T ss_dssp SEEEEEC
T ss_pred CEEEEEC
Confidence 5555555
No 229
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.29 E-value=3.8e-05 Score=56.62 Aligned_cols=157 Identities=10% Similarity=0.067 Sum_probs=91.5
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec-C---CCCeEEEEEcCCCceEEE----ec--------------CCcEEEE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY-P---DSQVNRLEITPNKHYLAA----AG--------------NPHIRLF 61 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~~~~----~~--------------d~~i~i~ 61 (174)
++.++++...++.|..|+.. ++...-... . ...++.+.+++++.++++ +. .+.|..+
T Consensus 96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 45556555556789999875 543221111 1 124667999999988774 11 1345666
Q ss_pred EcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC------CcEEEEeCCCCeeE--Eee-c-ccCcEEEEEEccCC
Q 042260 62 DVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED------GTVKIWDLRAPVCQ--MEY-E-SRAAVNTVVLHPNQ 131 (174)
Q Consensus 62 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d------g~v~iwd~~~~~~~--~~~-~-~~~~v~~~~~~~~~ 131 (174)
|..+++...+ . .......++|+++++.++.+... +.|..||+...... ..+ . ....+..+++.+++
T Consensus 175 d~~~g~~~~~---~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G 250 (305)
T 3dr2_A 175 PPDGSPLQRM---A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGG 250 (305)
T ss_dssp CSSSCCCEEE---E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTS
T ss_pred cCCCCcEEEE---e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCC
Confidence 6555543322 1 33456789999999976666554 78999998654311 111 1 12334678899999
Q ss_pred CEEEEeeCCCcEEEEeCCCCcceeecCcccceeEEEE
Q 042260 132 TELISGDQNGNIRVWDLTANSCSCELGLQYGLRTFLF 168 (174)
Q Consensus 132 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 168 (174)
+. .+++.+ .|.+||.. +.....+..+..+....|
T Consensus 251 ~l-wv~~~~-gv~~~~~~-g~~~~~~~~~~~~~~~~f 284 (305)
T 3dr2_A 251 WL-WSSSGT-GVCVFDSD-GQLLGHIPTPGTASNCTF 284 (305)
T ss_dssp CE-EECCSS-EEEEECTT-SCEEEEEECSSCCCEEEE
T ss_pred CE-EEecCC-cEEEECCC-CCEEEEEECCCceeEEEE
Confidence 84 444444 49999984 444444444433433333
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.28 E-value=2.4e-05 Score=64.37 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=95.9
Q ss_pred cEEEEECCCCceeEEeecCCC---------CeEEEEEcCCC---c-eEEEecCCcEEEEEcCCCCCCCeEEeec------
Q 042260 16 TIKFWEAKSGRCYRTIQYPDS---------QVNRLEITPNK---H-YLAAAGNPHIRLFDVNSSSPQPVMSYDQ------ 76 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~---~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~------ 76 (174)
+|..+|.++|+.+-.++.... ...-+....++ . ++.+..++.+.++|.++++..-...+..
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 599999999998877654211 11112222244 3 3444567889999998875321111100
Q ss_pred --CCCC-E------------------------EEEEEeeCCCEEEEecC-------------------------------
Q 042260 77 --HTNN-V------------------------MAVGFQCDGNWMYSGSE------------------------------- 98 (174)
Q Consensus 77 --~~~~-v------------------------~~~~~~~~~~~l~t~~~------------------------------- 98 (174)
..+. + ..++++++...++....
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 0000 0 14577887777766432
Q ss_pred ------------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 99 ------------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 99 ------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
.|.|..||+.+.+....+....++....+...+..++.++.|+.++.||.++++.+.++.++.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 278999999999888777665555555566678888889999999999999999998876554
No 231
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.23 E-value=0.00013 Score=53.16 Aligned_cols=144 Identities=5% Similarity=-0.030 Sum_probs=97.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEeec---CCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSYDQ---HTNN 80 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~ 80 (174)
+.+.++.-.++.+.++|..+.+.+..+......-..+. +++. ++++-+++.+.+.|..+.+......... ....
T Consensus 76 ~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt--~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~ 153 (266)
T 2iwa_A 76 EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLA--TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIR 153 (266)
T ss_dssp TEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEE--ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred CEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEE--ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccc
Confidence 45666777889999999999999988875411223344 3444 4444466789999987754322222211 1124
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------------CcEEEEEEccCCCEEE-EeeCCCcEEE
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--------------AAVNTVVLHPNQTELI-SGDQNGNIRV 145 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~-s~~~d~~i~i 145 (174)
...+.+. +++..+....++.|.+-|..+.++...+... ...+.++++|+++.++ ++.....+..
T Consensus 154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 154 LNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred ceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 6677777 6766666667889999999999887776542 2569999999987655 5556778888
Q ss_pred EeCCCC
Q 042260 146 WDLTAN 151 (174)
Q Consensus 146 wd~~~~ 151 (174)
-++...
T Consensus 233 i~l~~~ 238 (266)
T 2iwa_A 233 IKLHLV 238 (266)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 887754
No 232
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.19 E-value=0.00029 Score=54.83 Aligned_cols=88 Identities=10% Similarity=0.151 Sum_probs=66.4
Q ss_pred EEEeeCCCEEEEec----------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCC-EEEEee-CCCcEEEEeCCCC
Q 042260 84 VGFQCDGNWMYSGS----------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQT-ELISGD-QNGNIRVWDLTAN 151 (174)
Q Consensus 84 ~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~d~~i~iwd~~~~ 151 (174)
++++++++.++... .++.|.+.|+.+.+.+.++........++|+|+++ .+++.. .++.|.++|..+.
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 57788877655543 13579999999999888887767789999999998 888777 4899999999999
Q ss_pred cceeec-CcccceeEEEEEeecC
Q 042260 152 SCSCEL-GLQYGLRTFLFYHQDM 173 (174)
Q Consensus 152 ~~~~~~-~~~~~~~~~~~~~~~~ 173 (174)
+...++ +...... +...+||
T Consensus 404 kvv~tI~~vG~~P~--~i~~~~~ 424 (426)
T 3c75_H 404 EELRSVDQLGRGPQ--IITTHDM 424 (426)
T ss_dssp CEEEEECCCSSSCC--EEECCCC
T ss_pred CEEEEecCCCCCCc--EEEcCCC
Confidence 988776 4443333 3333455
No 233
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.17 E-value=0.00027 Score=53.00 Aligned_cols=147 Identities=15% Similarity=0.222 Sum_probs=99.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCC--------CCeEEEEE---cCCCceEEEec--------------CCcE
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPD--------SQVNRLEI---TPNKHYLAAAG--------------NPHI 58 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~--------~~v~~~~~---~~~~~~~~~~~--------------d~~i 58 (174)
.+.++++.-..++|..||...+..... .... ..+.++.+ .|.+.+++... +..+
T Consensus 24 ~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v 102 (334)
T 2p9w_A 24 RQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSF 102 (334)
T ss_dssp TTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEE
T ss_pred CCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEE
Confidence 466777888999999999876543332 2211 13578999 67877766432 4568
Q ss_pred EEEEcC---CCCCCCeEEeecC-----------CCCEEEEEEeeCCCEEEEecCC-CcEEEEeCCCCeeEEee-cc----
Q 042260 59 RLFDVN---SSSPQPVMSYDQH-----------TNNVMAVGFQCDGNWMYSGSED-GTVKIWDLRAPVCQMEY-ES---- 118 (174)
Q Consensus 59 ~i~d~~---~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~t~~~d-g~v~iwd~~~~~~~~~~-~~---- 118 (174)
..+|+. +++......+... ......++..++|+..++++.. +.|...|.........+ ..
T Consensus 103 ~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~ 182 (334)
T 2p9w_A 103 HSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGG 182 (334)
T ss_dssp EEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSS
T ss_pred EEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcc
Confidence 889998 5644333333211 1247788899999999998888 77777776544222111 11
Q ss_pred -cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 119 -RAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 119 -~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
....+.|+++|++..|++...++.+.-+|++..
T Consensus 183 ~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 183 QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 123679999999998887766999999999854
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.17 E-value=0.00013 Score=55.07 Aligned_cols=145 Identities=16% Similarity=0.215 Sum_probs=92.9
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCC----eEE---EEEcC---CCceEEEecCCcEEEEEcCCCCCCCeEEeec
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQ----VNR---LEITP---NKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~----v~~---~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
.++.+..++.+..+|.++|+.+......... +.. +...| ++.+++++.++.+..+|..+++. .. ..
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~--~w--~~ 265 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI--MW--KR 265 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE--EE--EE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE--Ee--ec
Confidence 4667888999999999999887666532110 000 00111 35556666678899999987742 22 22
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-c-cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcce
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-S-RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (174)
.......... .+..++.++.++.+..+|.++.+...... . ...+..... .+..|+.++.+|.+..+|.++++..
T Consensus 266 ~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 266 ELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp CCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 2233333333 46677888889999999999887665544 1 112222222 3467888889999999999999887
Q ss_pred eecCc
Q 042260 155 CELGL 159 (174)
Q Consensus 155 ~~~~~ 159 (174)
.+.+.
T Consensus 342 ~~~~~ 346 (376)
T 3q7m_A 342 AQQKV 346 (376)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 76554
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.09 E-value=0.00016 Score=53.16 Aligned_cols=140 Identities=9% Similarity=0.092 Sum_probs=90.5
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEE
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGF 86 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~ 86 (174)
.+..++.++.+..+|.+ ++.......+...+..+...+++.+++++.++.+..+|.. ++ ....+......+.++..
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GT--EKWRFKTNDAITSAASI 184 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SC--EEEEEECSSCCCSCCEE
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC--EeEEEecCCCceeeeEE
Confidence 35567778899999988 7776666555445566667777887777777889999986 42 22233333444555666
Q ss_pred eeCCCEEEEecCCCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 87 QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 87 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
.+++...+.+ +.+..+| .+......+.. ...+.++...+++. |..++.++.+..+|. ++....+
T Consensus 185 d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~ 249 (330)
T 3hxj_A 185 GKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWR 249 (330)
T ss_dssp CTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEE
T ss_pred cCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEE
Confidence 6677755544 7899999 55554444433 34567777777665 555667777888874 3443333
No 236
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.08 E-value=0.00047 Score=56.66 Aligned_cols=132 Identities=11% Similarity=0.168 Sum_probs=78.6
Q ss_pred cEEEEECCCCce--eEEeec---CCCCeEEEEEcCCCceEEEe-c----CCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 16 TIKFWEAKSGRC--YRTIQY---PDSQVNRLEITPNKHYLAAA-G----NPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 16 ~v~vwd~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
.|++|++.+++. ...+.. +......+.++|++..++.. . ...+.++|+.++... ...+..+.......
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-~~~l~~~~~~~~~~- 286 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-LLTVQGDLDADVSL- 286 (693)
T ss_dssp EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC-CEEEECSSSSCEEE-
T ss_pred EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc-eEEEeCCCCceEEE-
Confidence 499999887653 222222 23346788999999866432 1 247899998765322 22333444444444
Q ss_pred EeeCCCEEE-EecCC---CcEEEEeCCCCee---EEeecccCcEEEEEEccCCCEEEEeeC-CC--cEEEEeCCCC
Q 042260 86 FQCDGNWMY-SGSED---GTVKIWDLRAPVC---QMEYESRAAVNTVVLHPNQTELISGDQ-NG--NIRVWDLTAN 151 (174)
Q Consensus 86 ~~~~~~~l~-t~~~d---g~v~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~ 151 (174)
++++++.|+ .+..+ +.|..+|+..+.. .....+...+. .++++++.|+.... ++ .|++||+..+
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555555444 44333 6799999987543 22223333333 78888887766544 44 6899998744
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.07 E-value=8.1e-05 Score=55.87 Aligned_cols=138 Identities=7% Similarity=0.055 Sum_probs=85.5
Q ss_pred cEEEEEee---CCCcEEEEECCCCceeEEeecC-----------------------------CCCeEEEEEcCCCceEEE
Q 042260 5 SVILATAS---YDKTIKFWEAKSGRCYRTIQYP-----------------------------DSQVNRLEITPNKHYLAA 52 (174)
Q Consensus 5 ~~~l~s~s---~D~~v~vwd~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~~~~ 52 (174)
+.+.++-+ .++.|.+||+.+++..+.+..+ ...+..++++|++..+..
T Consensus 132 g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~ 211 (343)
T 2qe8_A 132 NFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYL 211 (343)
T ss_dssp TEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEE
T ss_pred CEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEE
Confidence 45666765 7889999999887765543221 013578999999875554
Q ss_pred e-cCCcEEEEEcCC-----CCCC-----CeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecc--c
Q 042260 53 A-GNPHIRLFDVNS-----SSPQ-----PVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES--R 119 (174)
Q Consensus 53 ~-~d~~i~i~d~~~-----~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~--~ 119 (174)
+ ..+. ++|.+.. +... ......++......++++++|+.+++...++.|.+||............ -
T Consensus 212 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~ 290 (343)
T 2qe8_A 212 SPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKL 290 (343)
T ss_dssp EESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGG
T ss_pred EeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCce
Confidence 4 3332 4454421 1100 0001112334556788999999999999999999999944443222222 3
Q ss_pred CcEEEEEEccCCCEEEEeeCCCcE
Q 042260 120 AAVNTVVLHPNQTELISGDQNGNI 143 (174)
Q Consensus 120 ~~v~~~~~~~~~~~l~s~~~d~~i 143 (174)
..+.++++.+++..+++.+..+.+
T Consensus 291 ~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 291 SWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp SCEEEEEECTTSCEEEEECCGGGS
T ss_pred ecCCeeEECCCCcEEEEeCccccc
Confidence 457899999988877776554433
No 238
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.06 E-value=0.00039 Score=50.46 Aligned_cols=132 Identities=14% Similarity=0.197 Sum_probs=87.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC---CCCE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH---TNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~v 81 (174)
..+.+..-.++.+.+||.++.+.+.++.... .-..++.. .+.++.+.+++.+.++|..+.+.......... ...+
T Consensus 97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp TEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred CEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 3455566678999999999999999998643 22344432 23444444566788888876543222222111 1334
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc-------------CcEEEEEEccCCCEEEEeeC
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-------------AAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~s~~~ 139 (174)
..+.+. +|+..+..-.+..|.+.|.++.++...+... ...+.||++|++..|+..+.
T Consensus 175 NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 175 NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 456665 6776666667889999999999887666431 24699999998887766553
No 239
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.03 E-value=0.00056 Score=50.65 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=91.5
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecC--------------------CCCeEEEEEcC-CCceEEEecCCcEEEEEc
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYP--------------------DSQVNRLEITP-NKHYLAAAGNPHIRLFDV 63 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~-~~~~~~~~~d~~i~i~d~ 63 (174)
+.++.++..++.|..||..+++.. .+... .....++++.+ ++.++++.....+..+|.
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~ 108 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGS 108 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECT
T ss_pred CCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeC
Confidence 445677788889999987765432 22210 12467899997 777776655555777886
Q ss_pred CCCCCCCeEEe-e-cCCCCEEEEEEee-CCCEEEEecC-----------------CCcEEEEeCCCCeeEEeecccCcEE
Q 042260 64 NSSSPQPVMSY-D-QHTNNVMAVGFQC-DGNWMYSGSE-----------------DGTVKIWDLRAPVCQMEYESRAAVN 123 (174)
Q Consensus 64 ~~~~~~~~~~~-~-~~~~~v~~~~~~~-~~~~l~t~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~v~ 123 (174)
.++....+... . ........+++.+ +|+..++... ++.|..+|............-...+
T Consensus 109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~ 188 (322)
T 2fp8_A 109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPG 188 (322)
T ss_dssp TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCC
T ss_pred CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCc
Confidence 54432222111 1 1123467888998 8987777543 3678888887655433222223457
Q ss_pred EEEEccCCCEEEEe-eCCCcEEEEeCCC
Q 042260 124 TVVLHPNQTELISG-DQNGNIRVWDLTA 150 (174)
Q Consensus 124 ~~~~~~~~~~l~s~-~~d~~i~iwd~~~ 150 (174)
.++++|+++.|..+ +.++.|..+|+..
T Consensus 189 gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 89999999866544 5667899999875
No 240
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.03 E-value=0.00053 Score=49.90 Aligned_cols=130 Identities=10% Similarity=0.078 Sum_probs=86.3
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC---CCCEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH---TNNVM 82 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~v~ 82 (174)
.+.+..-.++.+.+||.++.+.+.++..... -+.++.. .+.++.+.+++.+.++|..+.+.........+ ...+.
T Consensus 107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 107 RLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp CEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 4555666789999999999999999986432 3455543 23444454577888888877643322222222 12455
Q ss_pred EEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------------CcEEEEEEccCCCEEEEee
Q 042260 83 AVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--------------AAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 83 ~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~s~~ 138 (174)
.+.|. +|+..+..-.+..|.+-|.++.++...+... ...+.||++|++..|+..+
T Consensus 185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 66766 6766666656889999999999887665432 3569999999766655443
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.03 E-value=0.00028 Score=57.97 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=49.4
Q ss_pred CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 98 EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 98 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
.+|.|.-||+.+.+.........+.....+...+..|+.++.|+.++.||.++++...++.++.
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 3488999999999887666554444433444577889999999999999999999998876544
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.02 E-value=0.00015 Score=53.35 Aligned_cols=141 Identities=11% Similarity=0.119 Sum_probs=88.5
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEe
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQ 87 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~ 87 (174)
+..++.++.|..+|.+ ++....+......+..+...+++.+.+++ +.+..+| .+++ ...........+.++...
T Consensus 150 l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~ 223 (330)
T 3hxj_A 150 IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT--EKWNFYAGYWTVTRPAIS 223 (330)
T ss_dssp EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC--EEEEECCSSCCCSCCEEC
T ss_pred EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc--EEEEEccCCcceeceEEC
Confidence 5567778999999988 87776666555556677777777776666 7788888 4442 223333333456666776
Q ss_pred eCCCEEEEecCCCcEEEEeCCCCeeEEeeccc-CcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 88 CDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR-AAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 88 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
++|+. ..++.++.+..+|... .....+... ..+..+.+.+++ .|..++.++.|..+|. +++......
T Consensus 224 ~~g~l-~v~t~~~gl~~~~~~g-~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~ 291 (330)
T 3hxj_A 224 EDGTI-YVTSLDGHLYAINPDG-TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE 291 (330)
T ss_dssp TTSCE-EEEETTTEEEEECTTS-CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred CCCeE-EEEcCCCeEEEECCCC-CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE
Confidence 66654 4455677788888543 333333322 223345555444 5667778888999996 555554443
No 243
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.99 E-value=7.3e-05 Score=57.12 Aligned_cols=137 Identities=12% Similarity=-0.016 Sum_probs=90.7
Q ss_pred CcEEEEEeeCCC----cEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-----------CCcEEEEEcCCCCC
Q 042260 4 PSVILATASYDK----TIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-----------NPHIRLFDVNSSSP 68 (174)
Q Consensus 4 ~~~~l~s~s~D~----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~ 68 (174)
+..+.++-..+. +|.+.|..+++.+..+.....+ .+.++|+++.+..+. ++.+.+||..+.+.
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred CCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 356677776666 8889999999999999876665 799999987665542 56799999988754
Q ss_pred CCeEEeecC-------CCCEEEEEEeeCCCEEEEecC--CCcEEE--EeCCCCeeEEeecccCcEEEEEEccCCC-EEEE
Q 042260 69 QPVMSYDQH-------TNNVMAVGFQCDGNWMYSGSE--DGTVKI--WDLRAPVCQMEYESRAAVNTVVLHPNQT-ELIS 136 (174)
Q Consensus 69 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~t~~~--dg~v~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s 136 (174)
....... ......++++|+|++++.+.. +..+.+ +|..+ ..++..... ..+.|++. .+++
T Consensus 109 --v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~ 180 (368)
T 1mda_H 109 --IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYL 180 (368)
T ss_dssp --EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEEC
T ss_pred --EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEE
Confidence 3333221 123557889999998887754 467888 99977 233322111 12234332 3445
Q ss_pred eeCCCcEEEEeCCC
Q 042260 137 GDQNGNIRVWDLTA 150 (174)
Q Consensus 137 ~~~d~~i~iwd~~~ 150 (174)
.+.|+.+...|+.+
T Consensus 181 ~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 181 GSCPASLAASDLAA 194 (368)
T ss_dssp CCCTTSCEEEECCS
T ss_pred EcCCCCEEEEECcc
Confidence 55677777777765
No 244
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.99 E-value=0.00027 Score=58.13 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=95.9
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecC-C----CCeEEEEEcCCCceEEEec------CCcEEEEEcCCCCCCCeEEee
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYP-D----SQVNRLEITPNKHYLAAAG------NPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~ 75 (174)
.++.++.|+.|..+|.++|+.+-.+... + ..+...-.-..+.++++.. ++.++.+|..+++. +-.+.
T Consensus 130 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~--~W~~~ 207 (677)
T 1kb0_A 130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGER--KWRWF 207 (677)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE--EEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcE--EEEec
Confidence 4667788999999999999998777654 2 1121100011345555443 57799999988743 21111
Q ss_pred cCC--------------------------------CCEEEEEEeeCCCEEEEecCCC-------------------cEEE
Q 042260 76 QHT--------------------------------NNVMAVGFQCDGNWMYSGSEDG-------------------TVKI 104 (174)
Q Consensus 76 ~~~--------------------------------~~v~~~~~~~~~~~l~t~~~dg-------------------~v~i 104 (174)
... .....+++++++..++.+..++ .|..
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A 287 (677)
T 1kb0_A 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (677)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence 110 0112467778888888777654 4999
Q ss_pred EeCCCCeeEEeeccc----------CcEEEEEEccCC---CEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 105 WDLRAPVCQMEYESR----------AAVNTVVLHPNQ---TELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 105 wd~~~~~~~~~~~~~----------~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
+|.++.+....++.. ....-+....++ ..|+.++.+|.+.++|.++++.....+
T Consensus 288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 999998877665421 112222233366 578889999999999999998876643
No 245
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.97 E-value=0.00013 Score=55.79 Aligned_cols=84 Identities=5% Similarity=0.014 Sum_probs=63.6
Q ss_pred EEEeeCCCEEEEecC---------CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCE-EEEee-CCCcEEEEeCCCCc
Q 042260 84 VGFQCDGNWMYSGSE---------DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTE-LISGD-QNGNIRVWDLTANS 152 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~-~d~~i~iwd~~~~~ 152 (174)
++++++++.++.+.. ++.+.++|+.+.+.+.++........++++|+++. +++.. .++.|.++|+.+.+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 578999887665422 23566999999888877776667899999999985 45555 48999999999999
Q ss_pred ceeecCcccceeEEE
Q 042260 153 CSCELGLQYGLRTFL 167 (174)
Q Consensus 153 ~~~~~~~~~~~~~~~ 167 (174)
...++......-.+.
T Consensus 349 vv~~I~vg~~P~~i~ 363 (368)
T 1mda_H 349 DQSSVELDKGPESLS 363 (368)
T ss_dssp EEEECCCCSCCCEEE
T ss_pred EEEEEECCCCCCEEE
Confidence 888876555554443
No 246
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.96 E-value=0.00051 Score=56.62 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=93.7
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecC-C-CCeEEEEEcC---CCceEEEec------CCcEEEEEcCCCCCCCeEEee
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYP-D-SQVNRLEITP---NKHYLAAAG------NPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~-~~v~~~~~~~---~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~ 75 (174)
.++.++.|+.|..+|.++|+.+-.+... + .....+...| ++.++++.. ++.+..||.++++. +-.+.
T Consensus 123 ~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~--~W~~~ 200 (689)
T 1yiq_A 123 KVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE--AWRFY 200 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE--EEEEE
T ss_pred EEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE--EEEec
Confidence 4677888999999999999988766542 1 1111111112 455555432 46789999988742 21111
Q ss_pred c-------------------------------CCCCEEEEEEeeCCCEEEEecCCCc-------------------EEEE
Q 042260 76 Q-------------------------------HTNNVMAVGFQCDGNWMYSGSEDGT-------------------VKIW 105 (174)
Q Consensus 76 ~-------------------------------~~~~v~~~~~~~~~~~l~t~~~dg~-------------------v~iw 105 (174)
. ....-...+++++.+.++.+..++. |..+
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 0 0001124677888888888887763 9999
Q ss_pred eCCCCeeEEeeccc----------CcEEEEEEccCCC---EEEEeeCCCcEEEEeCCCCcceee
Q 042260 106 DLRAPVCQMEYESR----------AAVNTVVLHPNQT---ELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 106 d~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
|.++.+....+... .++.-.....++. .|+.++.+|.+..+|.++++.+..
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 99998877665421 1221112222454 688899999999999999987744
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.95 E-value=0.0022 Score=46.01 Aligned_cols=131 Identities=10% Similarity=0.110 Sum_probs=87.3
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC---CCCE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH---TNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~v 81 (174)
.++....-.++.+.+||.++.+.+.++..... -+.++.. .+.++++-+++.|.++|..+.+.........+ ...+
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~l 152 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNL 152 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccc
Confidence 45566677789999999999999999986543 3455543 23455555677788888877643322222211 1344
Q ss_pred EEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc--------------CcEEEEEEccCCCEEEEee
Q 042260 82 MAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR--------------AAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~s~~ 138 (174)
..+.+. +|+..+..-.+..|.+-|.++.++...+... ...+.|+++|++..|+..+
T Consensus 153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 556654 6666666656779999999998887665421 3569999999877766554
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.78 E-value=0.0035 Score=50.59 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=93.9
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEE-c-CCCceEEEec-------------------CCcEEEEEcC
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEI-T-PNKHYLAAAG-------------------NPHIRLFDVN 64 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~~~~~-------------------d~~i~i~d~~ 64 (174)
++++...+..|.+-|+.+.++...+..+ ......+++ + |++.++..+. ++.+.+.|..
T Consensus 104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~ 183 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD 183 (595)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence 4566666778999999999988755543 244778887 4 7777665542 2356777877
Q ss_pred CCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCC--------------------------------------cEEEEe
Q 042260 65 SSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--------------------------------------TVKIWD 106 (174)
Q Consensus 65 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--------------------------------------~v~iwd 106 (174)
+.+. .....-- ..-..++.+++|+++++.+.+. .|.+.|
T Consensus 184 t~~v--~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID 260 (595)
T 1fwx_A 184 KWEV--AWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD 260 (595)
T ss_dssp TTEE--EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred CCeE--EEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe
Confidence 6432 2222211 2345566788899888877543 467777
Q ss_pred CCC--Cee-EEeecccCcEEEEEEccCCCEEEEee-CCCcEEEEeCCCC
Q 042260 107 LRA--PVC-QMEYESRAAVNTVVLHPNQTELISGD-QNGNIRVWDLTAN 151 (174)
Q Consensus 107 ~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~ 151 (174)
.++ ... ...+........+.++|+++++++++ .+.+|.++|+.+.
T Consensus 261 ~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 261 GRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp CSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred CcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 776 333 33444445567889999999876554 5789999999965
No 249
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.76 E-value=0.0021 Score=51.98 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=47.9
Q ss_pred CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcccce
Q 042260 98 EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQYGL 163 (174)
Q Consensus 98 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 163 (174)
.+|.+.-||+.+.+.........++..-.+...+..|+.|+.|+.++.||.++++.+++++++...
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~ 529 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI 529 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCc
Confidence 368899999999887765544333322222235678888999999999999999999887665543
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.69 E-value=0.0023 Score=51.60 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=47.1
Q ss_pred CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 98 EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 98 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
.+|.+..||+.+.+....+....++....+...+..|+.++.|+.++.+|.++++.+.++.+..
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 3578999999988877666544433333333356778889999999999999999998876443
No 251
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.67 E-value=0.00085 Score=54.12 Aligned_cols=137 Identities=11% Similarity=0.097 Sum_probs=90.7
Q ss_pred eCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-C-----------------------------------
Q 042260 12 SYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-N----------------------------------- 55 (174)
Q Consensus 12 s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d----------------------------------- 55 (174)
-+++.+-+.|.++.+.+..+.... .-..++++|+++++..+. +
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 345679999999888877776543 345677888877654432 1
Q ss_pred ---CcEEEEEcCCCCCCC-eEEeecCCCCEEEEEEeeCCCEEE-EecCCCcEEEEeCCCCe------------eEEeecc
Q 042260 56 ---PHIRLFDVNSSSPQP-VMSYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRAPV------------CQMEYES 118 (174)
Q Consensus 56 ---~~i~i~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~~~------------~~~~~~~ 118 (174)
+.+.+.|.++.+... ...... .....++.++|+|++++ ++..+..|.++|+.+.. ...+...
T Consensus 251 ~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 251 QELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred eEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 135566665411111 111211 24566788999999655 45568899999998642 3444555
Q ss_pred cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 119 RAAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 119 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
......++|+|++....+.--|++|..||+.+
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 67789999999994334555689999999987
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.62 E-value=0.0086 Score=42.88 Aligned_cols=150 Identities=10% Similarity=0.015 Sum_probs=89.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEEec---CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAG---NPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
+.+.++-...+.|.+++...................++++|+ +.++++.. .+.|..+++...... .........
T Consensus 91 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~--~~~~~~~~~ 168 (267)
T 1npe_A 91 RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR--ILAQDNLGL 168 (267)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE--EEECTTCSC
T ss_pred CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE--EEEECCCCC
Confidence 455666666778888887643222112222245688999995 54444432 356777777543211 111223356
Q ss_pred EEEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCCCcceeecC
Q 042260 81 VMAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 81 v~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
...++++++++ ..++-...+.|..+|..................+++. +..|. +...++.|..+|..+++....+.
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 78899998765 4566667789999999754333222222334566653 44454 44456789999999888776654
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.62 E-value=0.0034 Score=51.52 Aligned_cols=147 Identities=13% Similarity=0.215 Sum_probs=92.0
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCC----CeEE-EEEcCCCceEEEec------CCcEEEEEcCCCCCCCeEEee
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDS----QVNR-LEITPNKHYLAAAG------NPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~ 75 (174)
.++.++.|+.|..+|.++|+.+-.+..... .+.. -.+. .+.++++.. ++.+..+|.++++. +-.+.
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~--~W~~~ 195 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKL--AWRFY 195 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCE--EEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcE--EEEec
Confidence 466778899999999999998877664211 1111 0111 344554432 36788889887742 21111
Q ss_pred c---C----------------------------CCCEEEEEEeeCCCEEEEecCCC-------------------cEEEE
Q 042260 76 Q---H----------------------------TNNVMAVGFQCDGNWMYSGSEDG-------------------TVKIW 105 (174)
Q Consensus 76 ~---~----------------------------~~~v~~~~~~~~~~~l~t~~~dg-------------------~v~iw 105 (174)
. . .......++.+....++.+..++ .|.-+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1 0 00112356777778888887765 39999
Q ss_pred eCCCCeeEEeeccc----------CcEEEEEEccCCC---EEEEeeCCCcEEEEeCCCCcceee
Q 042260 106 DLRAPVCQMEYESR----------AAVNTVVLHPNQT---ELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 106 d~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
|.++.+....+... .++.-..+..+++ .|+.++.+|.+..+|.++++....
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence 99998877666431 2222222223554 588899999999999999987743
No 254
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=0.016 Score=44.91 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=84.2
Q ss_pred EeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEec-CC---cEEEEEcCCCCCCCeEEeecCCCCEEEE
Q 042260 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAAG-NP---HIRLFDVNSSSPQPVMSYDQHTNNVMAV 84 (174)
Q Consensus 10 s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~---~i~i~d~~~~~~~~~~~~~~~~~~v~~~ 84 (174)
.+...+.|+.+|++++... .+.........+++++++. ++++.. ++ ...+|....+.......+. .......+
T Consensus 154 v~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~gi 231 (430)
T 3tc9_A 154 LVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQNCNGA 231 (430)
T ss_dssp EEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCE
T ss_pred EEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCCceEE
Confidence 3333377888888765533 3333444578899999887 444432 11 1222222333332222222 12345677
Q ss_pred EEee-CCCEEEEecCCCcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCC
Q 042260 85 GFQC-DGNWMYSGSEDGTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTA 150 (174)
Q Consensus 85 ~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~ 150 (174)
++.+ ++.++++-..++.|..+|.......... ........++++|+++.| ++-..+..|..++...
T Consensus 232 avdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 232 ETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 8888 7888888878889999999876542222 222346899999999955 4555677899887663
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.55 E-value=0.0088 Score=48.55 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCccc
Q 042260 98 EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQY 161 (174)
Q Consensus 98 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 161 (174)
.+|.+.-||+.+.+.........+...-.+...+..|+.++.|+.++.+|.++++.+++.+++.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 4578999999998877665433332221222356778889999999999999999998876554
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.48 E-value=0.014 Score=41.79 Aligned_cols=145 Identities=7% Similarity=0.016 Sum_probs=88.3
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCC-ceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNK-HYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+.+.++-..++.|..++..++.....+...-.....+++++.+ .++++. ..+.|..+++...... ...........
T Consensus 48 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--~~~~~~~~~P~ 125 (267)
T 1npe_A 48 KVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR--VLFDTGLVNPR 125 (267)
T ss_dssp TEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSSEE
T ss_pred CEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE--EEEECCCCCcc
Confidence 4566666677888888877654332222222457889999864 444443 4567888888643221 11222225678
Q ss_pred EEEEeeCCCE-EEEecC--CCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCCC
Q 042260 83 AVGFQCDGNW-MYSGSE--DGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTAN 151 (174)
Q Consensus 83 ~~~~~~~~~~-l~t~~~--dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~ 151 (174)
.+++++++.. +++... .+.|..+++......... ..-...+.++++|++..|. +-...+.|..+|+...
T Consensus 126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (267)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence 8999986554 444433 468888887643322111 2224578999999876665 4445678999998753
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.44 E-value=0.0011 Score=54.13 Aligned_cols=150 Identities=12% Similarity=0.120 Sum_probs=85.0
Q ss_pred CcEEEEEeeCCC-----------cEEEEECCCCcee--EEeecC-CCCeEEEEEcCCCceEEEec--CCcEEEEEcCCCC
Q 042260 4 PSVILATASYDK-----------TIKFWEAKSGRCY--RTIQYP-DSQVNRLEITPNKHYLAAAG--NPHIRLFDVNSSS 67 (174)
Q Consensus 4 ~~~~l~s~s~D~-----------~v~vwd~~~~~~~--~~~~~~-~~~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~ 67 (174)
++++++.||.+. .+.+||..+++.. ...... .....+.++..++.+++.++ +..+.+||..+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 567888887654 5889998887642 222222 22334566677777776654 3469999987765
Q ss_pred CCCeEEeecCCCCEEEEEEeeCCCEEEEec-CC-----CcEEEEeCCCCeeEEeec-----ccCcEEEEEEccCCCEEEE
Q 042260 68 PQPVMSYDQHTNNVMAVGFQCDGNWMYSGS-ED-----GTVKIWDLRAPVCQMEYE-----SRAAVNTVVLHPNQTELIS 136 (174)
Q Consensus 68 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d-----g~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s 136 (174)
+.....+...+.. .+++..++++.++.|+ .+ ..+.+||..+......-. ....-...++..++...+.
T Consensus 277 W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 355 (656)
T 1k3i_A 277 WIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF 355 (656)
T ss_dssp EEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred eeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEE
Confidence 4433222222222 3344456889989888 44 569999998765433210 0000000122234444455
Q ss_pred eeCC---------CcEEEEeCCCCcce
Q 042260 137 GDQN---------GNIRVWDLTANSCS 154 (174)
Q Consensus 137 ~~~d---------~~i~iwd~~~~~~~ 154 (174)
|+.+ ..+..||.......
T Consensus 356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~ 382 (656)
T 1k3i_A 356 GWKKGSVFQAGPSTAMNWYYTSGSGDV 382 (656)
T ss_dssp ECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred ECCCCcEEEecCccceeeeecCCccee
Confidence 5444 35678888876533
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.26 E-value=0.031 Score=41.14 Aligned_cols=132 Identities=10% Similarity=0.023 Sum_probs=74.9
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCE
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNW 92 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 92 (174)
+.|..||..+++...... .-.....+++++++..+ ++ ...+.|..+++..........+..... ...+++.++|++
T Consensus 165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l 242 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF 242 (322)
T ss_dssp EEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred ceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence 456666655544322111 11235678999987644 33 345779999987532211222211223 677888899987
Q ss_pred EEEecC----------CCcEEEEeCCCCeeEEeeccc-----CcEEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 042260 93 MYSGSE----------DGTVKIWDLRAPVCQMEYESR-----AAVNTVVLHPNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 93 l~t~~~----------dg~v~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
.++... .+.|..+|.. ......+... ..+..+++ .++...++...++.|..+++..
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 777644 4678888875 3333333321 23555555 4555556655677899998764
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.24 E-value=0.0031 Score=50.80 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEE--EEEEccCCCE
Q 042260 56 PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVN--TVVLHPNQTE 133 (174)
Q Consensus 56 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~ 133 (174)
+.+..||+.+++. .-.++.. ..+........+..++.++.|+.++.+|.++.+....+.....+. .+.+..+++.
T Consensus 444 g~l~a~D~~tG~~--~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~ 520 (571)
T 2ad6_A 444 GQIRAFDLTTGKA--KWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp EEEEEECTTTCCE--EEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CeEEEEECCCCCE--EEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence 4677788776642 2222211 112222223346677779999999999999998887776443321 2234456665
Q ss_pred EE
Q 042260 134 LI 135 (174)
Q Consensus 134 l~ 135 (174)
++
T Consensus 521 yv 522 (571)
T 2ad6_A 521 YI 522 (571)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.19 E-value=0.007 Score=48.91 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=45.3
Q ss_pred CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEE--EEEccCCCE
Q 042260 56 PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNT--VVLHPNQTE 133 (174)
Q Consensus 56 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~ 133 (174)
+.+..||+.+++. +-..... .....-...-.+..++.|+.|+.++.||.++.+.+..+.....+.+ +.+..+++.
T Consensus 466 G~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 466 GSLRAMDPVSGKV--VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEEEEECTTTCCE--EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ceEEEEECCCCCE--EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 4577788777642 1111111 1111111122466788899999999999999998877766544432 455567764
Q ss_pred E
Q 042260 134 L 134 (174)
Q Consensus 134 l 134 (174)
.
T Consensus 543 Y 543 (582)
T 1flg_A 543 Y 543 (582)
T ss_dssp E
T ss_pred E
Confidence 3
No 261
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.19 E-value=0.046 Score=41.66 Aligned_cols=165 Identities=8% Similarity=-0.008 Sum_probs=93.1
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEe--cC-CcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAA--GN-PHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~d-~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+.+.++-...+.|.+.++........+...-....+++++|.+..+..+ +. +.|..++..... ............
T Consensus 171 g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~~~~~~P 248 (386)
T 3v65_B 171 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWP 248 (386)
T ss_dssp TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEECSSCSCE
T ss_pred CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--cEEEEECCCCCe
Confidence 3444555555666666655433222222222456889999865544333 33 557777765432 222222234457
Q ss_pred EEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 82 MAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 82 ~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
..++++++ +++.++-+..+.|..+|+.......... .......+++ ..+..+.+...++.|..+|..++.....+..
T Consensus 249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 88999964 5555666677889999986533222222 2234577777 4455556666678899999766665544432
Q ss_pred c-cceeEEEEEeec
Q 042260 160 Q-YGLRTFLFYHQD 172 (174)
Q Consensus 160 ~-~~~~~~~~~~~~ 172 (174)
+ ..+....++|+.
T Consensus 328 ~~~~p~gi~v~~~~ 341 (386)
T 3v65_B 328 KLHFPMDIHTLHPQ 341 (386)
T ss_dssp SCSCCCCEEEESGG
T ss_pred CCCCCceEEEEchh
Confidence 2 334556667754
No 262
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.14 E-value=0.056 Score=42.01 Aligned_cols=141 Identities=11% Similarity=0.167 Sum_probs=88.8
Q ss_pred CcEEEEEeeCCCcEEEE--------ECCCCceeEEeecC----CCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCC-
Q 042260 4 PSVILATASYDKTIKFW--------EAKSGRCYRTIQYP----DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQP- 70 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vw--------d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~- 70 (174)
.+++++++.++..+.++ ++..+..-+.++.+ -..+..+..+|+|.+++..++..+.+..+..+....
T Consensus 22 s~R~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 22 SPRYIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp CCEEEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCC
T ss_pred CCcEEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCc
Confidence 34555566655555554 33333223333333 125778999999999999999999999987432111
Q ss_pred ---------eEEeec------CCCCEEEEEEee---CCCEEEEecCCCcEEEEeCCCC--eeEEeecc----------cC
Q 042260 71 ---------VMSYDQ------HTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAP--VCQMEYES----------RA 120 (174)
Q Consensus 71 ---------~~~~~~------~~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~~~--~~~~~~~~----------~~ 120 (174)
...+.- ....|..+.|+| ++..|+.=..|+.||+||+... ++. .+.. ..
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN 180 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence 112222 246799999998 4567888889999999999751 111 1211 14
Q ss_pred cEEEEEEccCCCEEEEe--eCCCcEEE
Q 042260 121 AVNTVVLHPNQTELISG--DQNGNIRV 145 (174)
Q Consensus 121 ~v~~~~~~~~~~~l~s~--~~d~~i~i 145 (174)
.|.+++|..++-.|... +.+|.|.-
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 67888998876666553 36676643
No 263
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.13 E-value=0.083 Score=43.96 Aligned_cols=143 Identities=12% Similarity=0.148 Sum_probs=91.3
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeec-------CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEe------
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQY-------PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY------ 74 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------ 74 (174)
|-.|..++-|..|+..++... .+.. ....|.++...+++.+.++..++.+..|+..++........
T Consensus 323 lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 401 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESAR 401 (795)
T ss_dssp EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------
T ss_pred EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCccc
Confidence 334555566788876654322 1211 23458899888888888888777899999866532211100
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.-....|.++...++++.+..|+.++-+..+|.++........ ....|.++...++++..+. +. +.+.+||..
T Consensus 402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~ 479 (795)
T 4a2l_A 402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPE 479 (795)
T ss_dssp CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETT
T ss_pred CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCC
Confidence 0123568888888888845666776779999988765433211 2356899998887775554 44 458899987
Q ss_pred CCcc
Q 042260 150 ANSC 153 (174)
Q Consensus 150 ~~~~ 153 (174)
+++.
T Consensus 480 ~~~~ 483 (795)
T 4a2l_A 480 QRSF 483 (795)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7643
No 264
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.11 E-value=0.082 Score=43.97 Aligned_cols=139 Identities=6% Similarity=0.036 Sum_probs=88.7
Q ss_pred EEEeeCCCcEEEEECCCCceeEEee----cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEe----ecCCC
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQ----YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY----DQHTN 79 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~ 79 (174)
|-.|..++-|..||.++++...-.. .+...|.++...+++.+.++.. ..+.+||..++........ .....
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSK 498 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCc
Confidence 4456666668999988776432211 1234688888888888877766 5688899866532211100 11235
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec--------ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE--------SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
.+.++...++|+..+.+. +-+..||..+... .+. ....|.++...++++..++ +.+ .+..||..+.
T Consensus 499 ~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNEKDK 572 (795)
T ss_dssp CEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEETTTT
T ss_pred eEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeECCCCC
Confidence 688888888888666554 4588888776554 221 1346899998888886554 344 5888998776
Q ss_pred cc
Q 042260 152 SC 153 (174)
Q Consensus 152 ~~ 153 (174)
+.
T Consensus 573 ~~ 574 (795)
T 4a2l_A 573 QI 574 (795)
T ss_dssp EE
T ss_pred cE
Confidence 53
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.10 E-value=0.0061 Score=50.65 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=73.4
Q ss_pred cEEEEECCCC-ceeEE-eecCCCCeEEEEEcCCCceE-EEecC-----CcEEEEEcCCCCCCCeEEeec-CCCCEEEEEE
Q 042260 16 TIKFWEAKSG-RCYRT-IQYPDSQVNRLEITPNKHYL-AAAGN-----PHIRLFDVNSSSPQPVMSYDQ-HTNNVMAVGF 86 (174)
Q Consensus 16 ~v~vwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~ 86 (174)
+|+++|+.+| +.+.. +. .....+.|+|++..| .+..+ ..|..+++.++.......+.. .......+.|
T Consensus 202 ~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~ 278 (751)
T 2xe4_A 202 TIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK 278 (751)
T ss_dssp EEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE
T ss_pred EEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE
Confidence 5999999988 63211 11 113457899988644 44433 246777776553222333332 2234667889
Q ss_pred eeCCCEEEEecC---CCcEEEEeCCCC--ee--EEee-cccCcEEEEEEccCCCEEEEeeCC----CcEEEEeCCC
Q 042260 87 QCDGNWMYSGSE---DGTVKIWDLRAP--VC--QMEY-ESRAAVNTVVLHPNQTELISGDQN----GNIRVWDLTA 150 (174)
Q Consensus 87 ~~~~~~l~t~~~---dg~v~iwd~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~s~~~d----~~i~iwd~~~ 150 (174)
+++|++|+..+. ...|.++|+..+ .. .... .......+..|+..+.+++....+ ..|..+|+.+
T Consensus 279 SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 279 AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 999998776552 446888898764 22 1111 122344555544444444444333 3577777764
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.07 E-value=0.011 Score=49.02 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=70.6
Q ss_pred CeEEEEEc-CCCceEEEec----C--CcEEEEEcCCC-CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEE
Q 042260 37 QVNRLEIT-PNKHYLAAAG----N--PHIRLFDVNSS-SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVK 103 (174)
Q Consensus 37 ~v~~~~~~-~~~~~~~~~~----d--~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~ 103 (174)
.+....|+ |++..++-+. + ..|+++|+.++ +.... .+.. ....+.|+++++.|+-...| ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 46778999 9998766332 1 24999999876 52111 1111 13467899999877766654 2588
Q ss_pred EEeCCCCee--EEee--cccCcEEEEEEccCCCEEEEeeC---CCcEEEEeCCCC
Q 042260 104 IWDLRAPVC--QMEY--ESRAAVNTVVLHPNQTELISGDQ---NGNIRVWDLTAN 151 (174)
Q Consensus 104 iwd~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~ 151 (174)
++++.+... ...+ ........+.++|+++.|+..+. ...|.++|+..+
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 888876531 1222 22234567899999998775442 345888999865
No 267
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.07 E-value=0.059 Score=40.79 Aligned_cols=139 Identities=12% Similarity=0.242 Sum_probs=91.7
Q ss_pred EEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC----Cc---eEEEe--c--CCcEEEEEcCCCCCCCeEEee
Q 042260 7 ILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN----KH---YLAAA--G--NPHIRLFDVNSSSPQPVMSYD 75 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~~~~~--~--d~~i~i~d~~~~~~~~~~~~~ 75 (174)
++++....+-+.+||+ +|+.++.+.. ..++.+..-|. +. +++++ . ++.+++|++..... .+....
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECS
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeecc
Confidence 4666677788999999 7888888753 45777666552 21 33333 3 56799998743211 122221
Q ss_pred -------cCCCCEEEEEE--ee-CCC-EEEEecCCCcEEEEeCC-------CCeeEEeecccCcEEEEEEccCCCEEEEe
Q 042260 76 -------QHTNNVMAVGF--QC-DGN-WMYSGSEDGTVKIWDLR-------APVCQMEYESRAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 76 -------~~~~~v~~~~~--~~-~~~-~l~t~~~dg~v~iwd~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 137 (174)
.....+-.+++ ++ .++ +++....+|.+..|++. +.+.+.++.....+-.++..+....|+.+
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEe
Confidence 11144556666 44 344 57777788999999983 33456677777889999999988899999
Q ss_pred eCCCcEEEEeCC
Q 042260 138 DQNGNIRVWDLT 149 (174)
Q Consensus 138 ~~d~~i~iwd~~ 149 (174)
-++..|-.+|.+
T Consensus 198 eEd~GIw~~da~ 209 (355)
T 3amr_A 198 EEDEAIWKFSAE 209 (355)
T ss_dssp ETTTEEEEEECS
T ss_pred cccceEEEEeCC
Confidence 998666555544
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.06 E-value=0.036 Score=44.99 Aligned_cols=147 Identities=13% Similarity=0.141 Sum_probs=89.6
Q ss_pred EEEeeCCCcEEEEECCCCceeEEeecCCC----CeEE-EEEcCCCceEEEec------CCcEEEEEcCCCCCCCeEEeec
Q 042260 8 LATASYDKTIKFWEAKSGRCYRTIQYPDS----QVNR-LEITPNKHYLAAAG------NPHIRLFDVNSSSPQPVMSYDQ 76 (174)
Q Consensus 8 l~s~s~D~~v~vwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~ 76 (174)
++.++.|+.|..+|.++|+.+-....... .+.. -.+. ++.+++++. ++.|+.+|.++++. +-.+..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~--~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQ--VWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCE--EEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcE--EEEEcC
Confidence 66778899999999999998766653321 1211 0111 345555442 67899999887742 211111
Q ss_pred CCCC-------------------------------------E-EEEEEeeCCCEEEEecCC----------------CcE
Q 042260 77 HTNN-------------------------------------V-MAVGFQCDGNWMYSGSED----------------GTV 102 (174)
Q Consensus 77 ~~~~-------------------------------------v-~~~~~~~~~~~l~t~~~d----------------g~v 102 (174)
.... + ...++.+....++.+..+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 1000 0 123455566666666554 378
Q ss_pred EEEeCCCCeeEEeeccc-----------CcEEEEEEc-cCC---CEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 103 KIWDLRAPVCQMEYESR-----------AAVNTVVLH-PNQ---TELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 103 ~iwd~~~~~~~~~~~~~-----------~~v~~~~~~-~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
.-+|.++.+....++.. .++. +... .++ ..++.++.+|.+...|.++++...+.+
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 99999998877665432 1222 1221 356 456778899999999999998876653
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.05 E-value=0.034 Score=45.40 Aligned_cols=115 Identities=9% Similarity=0.079 Sum_probs=74.0
Q ss_pred EEEEcC-CCceEEEec-CC-----------cEEEEEcCCCCCCCeEEeecCC-CCEEEEEEeeCCCEEEEecC-CCcEEE
Q 042260 40 RLEITP-NKHYLAAAG-NP-----------HIRLFDVNSSSPQPVMSYDQHT-NNVMAVGFQCDGNWMYSGSE-DGTVKI 104 (174)
Q Consensus 40 ~~~~~~-~~~~~~~~~-d~-----------~i~i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~t~~~-dg~v~i 104 (174)
..++.+ ++++++.++ +. .+.+||..++++..+..+...+ ....+.++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 445555 666655442 11 4788999888776665544333 23445667788999999884 568999
Q ss_pred EeCCCCeeEEeecc--cCcEEEEEEccCCCEEEEee-CC-----CcEEEEeCCCCcce
Q 042260 105 WDLRAPVCQMEYES--RAAVNTVVLHPNQTELISGD-QN-----GNIRVWDLTANSCS 154 (174)
Q Consensus 105 wd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~-~d-----~~i~iwd~~~~~~~ 154 (174)
||..+......-.. ...-.+++..++++.++.|+ .+ ..+.+||..+....
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 99887654332211 11123456667888888888 34 46999999887644
No 270
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.04 E-value=0.037 Score=40.24 Aligned_cols=145 Identities=10% Similarity=0.212 Sum_probs=76.2
Q ss_pred cEEEEEeeCCC-----cEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEEec--------CCcEEEEEcCCCCCCC
Q 042260 5 SVILATASYDK-----TIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAAAG--------NPHIRLFDVNSSSPQP 70 (174)
Q Consensus 5 ~~~l~s~s~D~-----~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~ 70 (174)
+.+++.|+.++ .+.+||+.+++-...-..+.... ..++.. ++.+++.++ ...+.+||..+..+..
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 187 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY 187 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence 45677777654 47788887664322211111111 122222 344444332 2347889987765543
Q ss_pred eEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCC-
Q 042260 71 VMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNG- 141 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~- 141 (174)
+..+...+.....+. .+++.++.|+.+ ..+.+||+.+......-.. +.....+.+ ++..++.|+.++
T Consensus 188 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~ 263 (302)
T 2xn4_A 188 IAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGS 263 (302)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred CCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCC
Confidence 322222222222222 357777777654 3688999987654332211 111222222 567777777653
Q ss_pred ----cEEEEeCCCCcce
Q 042260 142 ----NIRVWDLTANSCS 154 (174)
Q Consensus 142 ----~i~iwd~~~~~~~ 154 (174)
.+.+||+++.+..
T Consensus 264 ~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 264 CNLASVEYYNPTTDKWT 280 (302)
T ss_dssp SBCCCEEEEETTTTEEE
T ss_pred cccccEEEEcCCCCeEE
Confidence 4899999987644
No 271
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.03 E-value=0.039 Score=40.05 Aligned_cols=145 Identities=11% Similarity=0.142 Sum_probs=76.9
Q ss_pred cEEEEEeeCCC-----cEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEE-ecC-----CcEEEEEcCCCCCCCeE
Q 042260 5 SVILATASYDK-----TIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAA-AGN-----PHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 5 ~~~l~s~s~D~-----~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~-~~d-----~~i~i~d~~~~~~~~~~ 72 (174)
+.+++.|+.++ .+.+||+.+++-...-..+.... ..+... ++.+++. +.+ ..+..||..+..+..+.
T Consensus 113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 55677777543 58888887765332222221111 122222 4454443 322 45788998776554332
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC----
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN---- 140 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d---- 140 (174)
.+...+.....+. .+++.++.|+.+ ..+.+||+.+......-.. ......+.+ ++..++.|+.+
T Consensus 192 ~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~ 267 (301)
T 2vpj_A 192 PMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSL 267 (301)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSB
T ss_pred CCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcc
Confidence 2222222222222 356777777654 4689999987654432211 111222233 56677777765
Q ss_pred -CcEEEEeCCCCcce
Q 042260 141 -GNIRVWDLTANSCS 154 (174)
Q Consensus 141 -~~i~iwd~~~~~~~ 154 (174)
..+..||+++.+..
T Consensus 268 ~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 268 LSSIECYDPIIDSWE 282 (301)
T ss_dssp EEEEEEEETTTTEEE
T ss_pred cccEEEEcCCCCeEE
Confidence 35788999887644
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.97 E-value=0.085 Score=40.94 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=83.2
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecC----Cc-EEEEEcCCCCCCCeEEeecCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGN----PH-IRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d----~~-i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
+.+.++-.. +.|+.+|..+++..... ........+++++++.++++... .. +...+.. .......... ...
T Consensus 153 g~Lyv~D~~-~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~-~~~ 228 (433)
T 4hw6_A 153 DDLYWVGQR-DAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLSLC-NAR 228 (433)
T ss_dssp CEEEEECBT-SCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEEEE-ECS
T ss_pred CEEEEEeCC-CCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC-CCeecccccc-ccC
Confidence 444444333 77888888766544332 23345789999999886555431 11 2222322 2221111111 234
Q ss_pred CEEEEEEee-CCCEEEEecCCCcEEEEeCCCCee-EEee--cccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCC
Q 042260 80 NVMAVGFQC-DGNWMYSGSEDGTVKIWDLRAPVC-QMEY--ESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLT 149 (174)
Q Consensus 80 ~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~ 149 (174)
....+++.+ ++++.++-..++.|+.+|...... ...+ ........++++|+++.|. +-..+..|+.+|+.
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 456677888 777777777888999999875544 1111 1122235799999998554 55557789998865
No 273
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.93 E-value=0.034 Score=40.52 Aligned_cols=146 Identities=9% Similarity=0.118 Sum_probs=77.7
Q ss_pred CcEEEEEeeCC------CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEEec----------CCcEEEEEcCCC
Q 042260 4 PSVILATASYD------KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAAAG----------NPHIRLFDVNSS 66 (174)
Q Consensus 4 ~~~~l~s~s~D------~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~----------d~~i~i~d~~~~ 66 (174)
.+.+++.|+.+ ..+.+||..+++-...-..+.... ..+... ++.+++.++ ...+.+||..+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 35677777766 458889988765322211111111 122222 444444332 244788998776
Q ss_pred CCCCeEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEee
Q 042260 67 SPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 67 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~ 138 (174)
.+..+..+...+.....+. .+++.++.|+.+ ..+.+||+.+......-.. ......+.+ ++..++.|+
T Consensus 180 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 255 (306)
T 3ii7_A 180 TWTELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAG 255 (306)
T ss_dssp EEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred eEEECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence 5543332222222222222 266777777654 3688999887654322111 122233333 566777777
Q ss_pred CC-----CcEEEEeCCCCcce
Q 042260 139 QN-----GNIRVWDLTANSCS 154 (174)
Q Consensus 139 ~d-----~~i~iwd~~~~~~~ 154 (174)
.+ ..+..||+++.+..
T Consensus 256 ~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 256 FQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp BCSSSBCCEEEEEETTTTEEE
T ss_pred cCCCeeeeeEEEEcCCCCeEE
Confidence 54 45899999987654
No 274
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.86 E-value=0.075 Score=38.55 Aligned_cols=145 Identities=12% Similarity=0.165 Sum_probs=78.1
Q ss_pred cEEEEEeeCC-----CcEEEEECCCCc---eeEEeecCCCCe-EEEEEcCCCceEEEec------CCcEEEEEcCCCCCC
Q 042260 5 SVILATASYD-----KTIKFWEAKSGR---CYRTIQYPDSQV-NRLEITPNKHYLAAAG------NPHIRLFDVNSSSPQ 69 (174)
Q Consensus 5 ~~~l~s~s~D-----~~v~vwd~~~~~---~~~~~~~~~~~v-~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~ 69 (174)
+.+++.|+.+ ..+.+||..+++ -...-..+.... ..+... ++.+++.++ ...+.+||..+.++.
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 5677777765 458899987765 222111111111 122222 445544432 235788898777655
Q ss_pred CeEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCC-
Q 042260 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQN- 140 (174)
Q Consensus 70 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d- 140 (174)
.+......+.....+. .+++.++.|+.+ ..+.++|+.+......-... .....+.+ ++..++.|+.+
T Consensus 142 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 217 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDG 217 (301)
T ss_dssp EEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred ECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCC
Confidence 4433332222222222 367777777654 46889998876544322111 11222232 56677777764
Q ss_pred ----CcEEEEeCCCCcce
Q 042260 141 ----GNIRVWDLTANSCS 154 (174)
Q Consensus 141 ----~~i~iwd~~~~~~~ 154 (174)
..+.+||+++.+..
T Consensus 218 ~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp SSBCCCEEEEETTTTEEE
T ss_pred CcccceEEEEeCCCCcEE
Confidence 45899999887654
No 275
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.85 E-value=0.052 Score=42.19 Aligned_cols=105 Identities=12% Similarity=0.271 Sum_probs=70.6
Q ss_pred CCCceEEEecCCcEEEEEcCCCCCCCeEEeec--CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCe-----------
Q 042260 45 PNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQ--HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPV----------- 111 (174)
Q Consensus 45 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~----------- 111 (174)
.++.-++...++.+|.-++..+..-..+..+. .-..+..+..+++|+++|..+.. .|.|-.+..+.
T Consensus 30 ~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence 34455555557889988887543111222221 12257789999999999887554 78888876221
Q ss_pred -eEEeec-------ccCcEEEEEEccCC---CEEEEeeCCCcEEEEeCCC
Q 042260 112 -CQMEYE-------SRAAVNTVVLHPNQ---TELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 112 -~~~~~~-------~~~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~ 150 (174)
....+. .+.+|..+.|||-+ ..|++-..|+.||+||+..
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 112222 24679999999954 5789999999999999997
No 276
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.73 E-value=0.045 Score=40.16 Aligned_cols=146 Identities=9% Similarity=0.053 Sum_probs=75.1
Q ss_pred cEEEEEeeCC--------CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEE-Eec-C-----CcEEEEEcCCCCC
Q 042260 5 SVILATASYD--------KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLA-AAG-N-----PHIRLFDVNSSSP 68 (174)
Q Consensus 5 ~~~l~s~s~D--------~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~-~~~-d-----~~i~i~d~~~~~~ 68 (174)
+.+++.||.+ ..+.+||..+++-...-..+.... ..+... ++.+++ ++. + ..+.+||..+.++
T Consensus 99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE-CCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 4566677743 458889988764322111111111 122222 344444 333 1 3578899877654
Q ss_pred CCeEEeecCCCCEEEEEEeeCCCEEEEecCCC-----cEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC
Q 042260 69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG-----TVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d 140 (174)
..+..+...+.....+. .+++.++.|+.++ .+.+||+.+......-.. +.....+.+ ++..++.|+.+
T Consensus 178 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 178 KELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp EECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred EECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCcc
Confidence 43332222222222222 3667777776654 588899887654432211 111222233 55666777653
Q ss_pred C--------------cEEEEeCCCCccee
Q 042260 141 G--------------NIRVWDLTANSCSC 155 (174)
Q Consensus 141 ~--------------~i~iwd~~~~~~~~ 155 (174)
+ .+..||+++.+...
T Consensus 254 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 282 (315)
T 4asc_A 254 TLETESGELVPTELNDIWRYNEEEKKWEG 282 (315)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred ccCcCCccccccccCcEEEecCCCChhhh
Confidence 2 37789998876543
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.68 E-value=0.12 Score=38.37 Aligned_cols=164 Identities=10% Similarity=0.034 Sum_probs=90.6
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEe-c-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAA-G-NPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
.+.++-...+.|.++++........+...-.....+++.|.+. ++.+- + .+.|...+...... ............
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~~~l~~Pn 169 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--FIIINSEIYWPN 169 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC--EEEECSSCSCEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe--EEEEECCCCCcc
Confidence 3444545556677777654322222222334567888988544 44433 2 35576677653321 111222334567
Q ss_pred EEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCcc
Q 042260 83 AVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGLQ 160 (174)
Q Consensus 83 ~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (174)
.+++++++ ++.++-+..+.|..+|+.......... .......+++. .+..+.+-...+.|..+|..+++....+..+
T Consensus 170 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 170 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHSD 248 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECC
T ss_pred EEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeCC
Confidence 89999754 455666677899999986432222122 23345677774 3444556556788999999877654443221
Q ss_pred -cceeEEEEEeec
Q 042260 161 -YGLRTFLFYHQD 172 (174)
Q Consensus 161 -~~~~~~~~~~~~ 172 (174)
..+....+||+.
T Consensus 249 ~~~P~~i~v~~~~ 261 (318)
T 3sov_A 249 IFSPMDIHAFSQQ 261 (318)
T ss_dssp CSSCCCEEEECGG
T ss_pred CCCCcEEEEeccc
Confidence 233445566653
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.65 E-value=0.15 Score=39.11 Aligned_cols=164 Identities=12% Similarity=0.027 Sum_probs=93.8
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-c-CCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-G-NPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
.+.++-...+.|.+.++........+...-.....++++|.+..+ .+- + .+.|...++..... ............
T Consensus 172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~--~~~~~~~l~~P~ 249 (400)
T 3p5b_L 172 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPN 249 (400)
T ss_dssp EEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC--EEEECSSCSCEE
T ss_pred ceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc--EEEEECCCCceE
Confidence 344455555666666665443333333233447789999854444 333 2 35677777754322 222223345678
Q ss_pred EEEEeeCCCE-EEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 83 AVGFQCDGNW-MYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 83 ~~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
.+++++.+.. .++-...+.|...|+........... -.....+++ ..+..+.+-...+.|..+|..+++....+.
T Consensus 250 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 8999976554 45556678899999875432222221 233456666 344555566667889999987776655543
Q ss_pred c-ccceeEEEEEeec
Q 042260 159 L-QYGLRTFLFYHQD 172 (174)
Q Consensus 159 ~-~~~~~~~~~~~~~ 172 (174)
. ...+....+||+-
T Consensus 329 ~~~~~p~~i~v~~~~ 343 (400)
T 3p5b_L 329 ENLLSPEDMVLFHNL 343 (400)
T ss_dssp CSCSCEEEEEEESGG
T ss_pred cCCCCCceEEEEeec
Confidence 2 2345667777753
No 279
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.63 E-value=0.1 Score=43.28 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=84.2
Q ss_pred EEeeCCCcEEEEECCCCceeEEe---ecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEE
Q 042260 9 ATASYDKTIKFWEAKSGRCYRTI---QYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVG 85 (174)
Q Consensus 9 ~s~s~D~~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~ 85 (174)
-.|..++-|..||..++....-. ......|.++...+++.+.++..++.+..+|..+++.............|.++.
T Consensus 377 Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 377 WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFY 456 (781)
T ss_dssp EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEE
T ss_pred EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEE
Confidence 34454455788887654332111 123356888888888888887766678888876543211100011235688888
Q ss_pred EeeCCCEEEEecCCCcEEEEeCCCCeeEEeec-c-----cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 86 FQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE-S-----RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 86 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
..++++..+.. . +-+..+|..+........ . ...|.++...++++..+ |+.++.+..||...++
T Consensus 457 ~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 457 EDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp ECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCE
T ss_pred ECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCe
Confidence 77777655544 4 458888887654332221 1 35689999888877554 4554458888887654
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.55 E-value=0.15 Score=38.16 Aligned_cols=144 Identities=6% Similarity=-0.007 Sum_probs=81.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+.+..+-...+.|..++..++.....+........++++.+. +.+..+ ...+.|.+.++..... ............
T Consensus 85 ~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~~~l~~P~ 162 (349)
T 3v64_C 85 ELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSLEKPR 162 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECTTCSCEE
T ss_pred cEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EEEEeCCCCCcc
Confidence 334444444555666665544322222222223467788764 333333 3456788888765422 222233345678
Q ss_pred EEEEeeCC-CEEEEecCC-CcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEE-eeCCCcEEEEeCCC
Q 042260 83 AVGFQCDG-NWMYSGSED-GTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELIS-GDQNGNIRVWDLTA 150 (174)
Q Consensus 83 ~~~~~~~~-~~l~t~~~d-g~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s-~~~d~~i~iwd~~~ 150 (174)
.+++.|.+ .++++-..+ +.|...++.......... .-...+.++++|.+..|.. -+..+.|..+|+..
T Consensus 163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 89999754 455555555 788888887543222222 2245789999987666554 44567899999874
No 281
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.52 E-value=0.02 Score=47.31 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=87.1
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEe-cC-CcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAA-GN-PHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
.++++-...+.|.+.++........+.........++++|.+. ++.+. +. +.|..+++...... .+ .........
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l-~~~~l~~Pn 543 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL-VTENIQWPN 543 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EE-SCSSCSSCC
T ss_pred cEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EE-EeCCCCCcc
Confidence 3444545566777777664433222222223456788888544 33332 22 45666665432211 11 112234456
Q ss_pred EEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC
Q 042260 83 AVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG 158 (174)
Q Consensus 83 ~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 158 (174)
.++++++ ++++++-+..+.|..+|+........... ......+++..+ ..+.+....+.|..+|..+++....+.
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 7889875 55667777788999999865322221111 122344555433 445555667889999988776655543
Q ss_pred cc-cceeEEEEEee
Q 042260 159 LQ-YGLRTFLFYHQ 171 (174)
Q Consensus 159 ~~-~~~~~~~~~~~ 171 (174)
.+ ..+....++|+
T Consensus 623 ~~~~~P~~i~v~~~ 636 (699)
T 1n7d_A 623 ENLLSPEDMVLFHQ 636 (699)
T ss_dssp TTCSSCCCCCBCSS
T ss_pred cCCCCCcEEEEeCc
Confidence 32 23344445554
No 282
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.50 E-value=0.11 Score=37.89 Aligned_cols=145 Identities=10% Similarity=0.136 Sum_probs=75.6
Q ss_pred cEEEEEeeCC-----CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEE-ecC-----CcEEEEEcCCCCCCCeE
Q 042260 5 SVILATASYD-----KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAA-AGN-----PHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 5 ~~~l~s~s~D-----~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~-~~d-----~~i~i~d~~~~~~~~~~ 72 (174)
+.+++.|+.+ ..+.+||..+++-...-..+.... ..+... ++.+++. +.+ ..+.+||..+.++..+.
T Consensus 122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 200 (308)
T 1zgk_A 122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT 200 (308)
T ss_dssp TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECC
T ss_pred CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC
Confidence 4566666654 357888887754322211111111 122222 4444443 322 45788998776544332
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC----
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN---- 140 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d---- 140 (174)
.+...+.....+.+ +++.++.|+.+ ..+.+||+.+......... +.....+.+ ++..++.|+.+
T Consensus 201 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~ 276 (308)
T 1zgk_A 201 AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTF 276 (308)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCB
T ss_pred CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcc
Confidence 22222222222222 67777777654 5689999987654432111 111222222 56677777754
Q ss_pred -CcEEEEeCCCCcce
Q 042260 141 -GNIRVWDLTANSCS 154 (174)
Q Consensus 141 -~~i~iwd~~~~~~~ 154 (174)
..+.+||+++.+..
T Consensus 277 ~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 277 LDSVECYDPDTDTWS 291 (308)
T ss_dssp CCEEEEEETTTTEEE
T ss_pred cceEEEEcCCCCEEe
Confidence 35889999887654
No 283
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.48 E-value=0.17 Score=37.88 Aligned_cols=165 Identities=8% Similarity=-0.004 Sum_probs=92.5
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceE-EEe-cC-CcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYL-AAA-GN-PHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+.+.++-...+.|.+.+.........+...-....+++++|.+..+ .+- +. +.|...+....... ..........
T Consensus 128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~~~~~~P 205 (349)
T 3v64_C 128 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--IIADTHLFWP 205 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--ESCCSSCSCE
T ss_pred CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE--EEEECCCCCc
Confidence 3445555556677777765433222222223456889999855443 332 33 55777776543221 1112233457
Q ss_pred EEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 82 MAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 82 ~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
..++++++ +++.++-...+.|..+|+.......... .-.....+++ ..+....+-...+.|...|..++.....+..
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 88999975 4455666667889999987533222121 2234577777 3455555666677898888666654444321
Q ss_pred -ccceeEEEEEeec
Q 042260 160 -QYGLRTFLFYHQD 172 (174)
Q Consensus 160 -~~~~~~~~~~~~~ 172 (174)
...+....++|+.
T Consensus 285 ~~~~p~gi~v~~~~ 298 (349)
T 3v64_C 285 KLHFPMDIHTLHPQ 298 (349)
T ss_dssp SCSCCCCEEEECGG
T ss_pred CCCCCceEEEEccc
Confidence 2234456667753
No 284
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.44 E-value=0.12 Score=37.76 Aligned_cols=145 Identities=10% Similarity=0.148 Sum_probs=75.5
Q ss_pred cEEEEEeeC----C-----CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEEec------CCcEEEEEcCCCCC
Q 042260 5 SVILATASY----D-----KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAAAG------NPHIRLFDVNSSSP 68 (174)
Q Consensus 5 ~~~l~s~s~----D-----~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~ 68 (174)
+.+++.||. + ..+.+||..+++-...-..+.... ..++.. ++.+++.++ ...+.+||..+.++
T Consensus 71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 456666765 2 458888887764322111111111 122222 445444432 24578889877654
Q ss_pred CCeEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC
Q 042260 69 QPVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 69 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d 140 (174)
..+..+...+.....+.+ +++.++.|+.+ ..+.++|+.+......-.. +.....+.+ ++..++.|+.+
T Consensus 150 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 225 (308)
T 1zgk_A 150 HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYD 225 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCC
Confidence 333222222222223222 66777777654 4588899887654322111 111223333 56677777654
Q ss_pred -----CcEEEEeCCCCcce
Q 042260 141 -----GNIRVWDLTANSCS 154 (174)
Q Consensus 141 -----~~i~iwd~~~~~~~ 154 (174)
..+.+||+.+.+..
T Consensus 226 ~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 226 GQDQLNSVERYDVETETWT 244 (308)
T ss_dssp SSSBCCCEEEEETTTTEEE
T ss_pred CCCccceEEEEeCCCCcEE
Confidence 45899999887644
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.43 E-value=0.17 Score=37.25 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=92.1
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEe-cC-CcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAA-GN-PHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+.+.++-..++.|.+.|.........+........+++++|.+. ++.+. +. +.|...+..... . ...........
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~-~~~~~~~~~~P 166 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-I-YSLVTENIQWP 166 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-E-EEEECSSCSCE
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-e-EEEEECCCCCc
Confidence 34455555566777777664333222222334578899998544 44443 22 567767764321 1 11112234567
Q ss_pred EEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeec---ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 82 MAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYE---SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 82 ~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
..++++++++ ..++-+..+.|..+|+.......... .-.....+++. .+..+.+-..++.|..+|..+++....+
T Consensus 167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred eEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 7899997655 45556667899999987532221111 12345677774 4555556666788999998776544443
Q ss_pred Ccc-cceeEEEEEeec
Q 042260 158 GLQ-YGLRTFLFYHQD 172 (174)
Q Consensus 158 ~~~-~~~~~~~~~~~~ 172 (174)
... ..+....++|+.
T Consensus 246 ~~~~~~p~~i~v~~~~ 261 (316)
T 1ijq_A 246 AENLLSPEDMVLFHNL 261 (316)
T ss_dssp ECSCSCCCCEEEESGG
T ss_pred ecCCCCceEEEEeccc
Confidence 211 234445566643
No 286
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.35 E-value=0.35 Score=40.09 Aligned_cols=140 Identities=11% Similarity=0.081 Sum_probs=86.5
Q ss_pred EeeCCCcEEEEECCCCceeEEee--cCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee---cCCCCEEEE
Q 042260 10 TASYDKTIKFWEAKSGRCYRTIQ--YPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---QHTNNVMAV 84 (174)
Q Consensus 10 s~s~D~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~ 84 (174)
.|..++-+..+|.++++...-.. .....|.++...+++.+.++.. +.+..+|..++......... .....+.++
T Consensus 422 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 500 (781)
T 3v9f_A 422 FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI 500 (781)
T ss_dssp EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEE
Confidence 35555567888877665332211 1235688888888888877765 67888998765443222111 013568888
Q ss_pred EEeeCCCEEEEecCCCcEEEEeCCCCeeEEeec----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 85 GFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYE----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 85 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
...++|+..+....+| +..+|.+......... ....|.++...++++..++ +.+|-|..||..+++
T Consensus 501 ~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 501 AQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD 570 (781)
T ss_dssp EECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred EEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence 8888887655544344 7778887655432211 1346889998888876554 445544888887654
No 287
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.35 E-value=0.14 Score=37.21 Aligned_cols=145 Identities=15% Similarity=0.196 Sum_probs=75.2
Q ss_pred cEEEEEeeCCC-----cEEEEECCCCceeEEeecCCCCe-EEEEEcCCCce-EEEecC-----CcEEEEEcCCCCCCCeE
Q 042260 5 SVILATASYDK-----TIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHY-LAAAGN-----PHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 5 ~~~l~s~s~D~-----~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~-~~~~~d-----~~i~i~d~~~~~~~~~~ 72 (174)
+.+++.||.++ .+.+||..+++-...-..+.... ..++.. ++.+ ++++.+ ..+.+||..+.++..+.
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 55777777653 58888987765322211111111 122222 3444 444433 23678888776544332
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEecCC-------CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC--
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGSED-------GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN-- 140 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-------g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d-- 140 (174)
.+...+.....+. .+++.++.|+.+ ..+.+||+.+......-.. ......+.+ ++..++.|+.+
T Consensus 141 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 216 (302)
T 2xn4_A 141 PMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGP 216 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSS
T ss_pred CCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCC
Confidence 2222222222222 356677776542 3588999887654432111 111222232 56677777754
Q ss_pred ---CcEEEEeCCCCcce
Q 042260 141 ---GNIRVWDLTANSCS 154 (174)
Q Consensus 141 ---~~i~iwd~~~~~~~ 154 (174)
..+.+||+++....
T Consensus 217 ~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 217 LVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp SBCCCEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCCEe
Confidence 35889999887644
No 288
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.34 E-value=0.17 Score=36.40 Aligned_cols=147 Identities=9% Similarity=0.182 Sum_probs=93.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCC-CCeEEe------
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSP-QPVMSY------ 74 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~-~~~~~~------ 74 (174)
.+.+.+....++.|...|.. ++.++.+... .....++++.+++.++++. .++.+.++++..... ......
T Consensus 38 ~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~ 116 (255)
T 3qqz_A 38 SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQE 116 (255)
T ss_dssp TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSS
T ss_pred CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccccc
Confidence 45677777788889999988 8888877543 2457888898888876665 456788888765432 111111
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCC----CeeEEeec-------ccCcEEEEEEccCCCEE-EEeeCCCc
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRA----PVCQMEYE-------SRAAVNTVVLHPNQTEL-ISGDQNGN 142 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l-~s~~~d~~ 142 (174)
...+....+++|++.++.|+++.+.....+|.++. ........ ....+.+++++|....+ +....++.
T Consensus 117 ~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~ 196 (255)
T 3qqz_A 117 SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRA 196 (255)
T ss_dssp CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTE
T ss_pred ccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCe
Confidence 12345579999999887777776665555655531 11111100 12346899999966554 44555667
Q ss_pred EEEEeCCCC
Q 042260 143 IRVWDLTAN 151 (174)
Q Consensus 143 i~iwd~~~~ 151 (174)
+..+|.+-.
T Consensus 197 L~~~d~~g~ 205 (255)
T 3qqz_A 197 LQEVTLVGE 205 (255)
T ss_dssp EEEECTTCC
T ss_pred EEEEcCCCC
Confidence 777886643
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.33 E-value=0.25 Score=38.24 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=84.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEe-ecC-CCCeEEEEEcCCCce-EEE-ecCCcEEEEEcCC--CCCCCeEEeec--
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTI-QYP-DSQVNRLEITPNKHY-LAA-AGNPHIRLFDVNS--SSPQPVMSYDQ-- 76 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~-~~~-~~d~~i~i~d~~~--~~~~~~~~~~~-- 76 (174)
+.+.++-..++.|+.+|..++.....+ ... ...-..++++|++.. .++ ...+.|+.++... +.......+.+
T Consensus 240 G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~ 319 (433)
T 4hw6_A 240 GKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH 319 (433)
T ss_dssp CCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT
T ss_pred CeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC
Confidence 445556666778888888766652222 221 122346999999873 333 3456788877653 21111111111
Q ss_pred -------------CCCCEEEEEE---------eeCCCEEEEecCCCcEEEEeCCCCeeEEeecc----------------
Q 042260 77 -------------HTNNVMAVGF---------QCDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---------------- 118 (174)
Q Consensus 77 -------------~~~~v~~~~~---------~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---------------- 118 (174)
.-.....+++ .+++++.++-...+.|+.++.. .........
T Consensus 320 g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~ 398 (433)
T 4hw6_A 320 SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQ 398 (433)
T ss_dssp TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTT
T ss_pred CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CCEEEEEeCCCCCccccCCCccccc
Confidence 1133567888 6777888888888899999864 332221111
Q ss_pred --cCcEEEEEEc-cCCCEEEEeeCCCcEEEEeCC
Q 042260 119 --RAAVNTVVLH-PNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 119 --~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~ 149 (174)
-.....+++. +++.++++-..+..|+..+++
T Consensus 399 ~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 399 ALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 0236789999 566666665667788887764
No 290
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.29 E-value=0.24 Score=37.61 Aligned_cols=144 Identities=6% Similarity=-0.002 Sum_probs=81.3
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+.++.+-...+.|..++..++.....+........++++.+. +.+..+ ...+.|.+.++.... .............
T Consensus 128 ~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--~~~l~~~~l~~P~ 205 (386)
T 3v65_B 128 ELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RKVLLWQSLEKPR 205 (386)
T ss_dssp TEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--CEEEECSSCSCEE
T ss_pred CeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--eEEeecCCCCCCc
Confidence 344555555566666666544322222222223456777764 333333 345667777775432 2222233345678
Q ss_pred EEEEeeCCC-EEEEecCC-CcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260 83 AVGFQCDGN-WMYSGSED-GTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA 150 (174)
Q Consensus 83 ~~~~~~~~~-~l~t~~~d-g~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~ 150 (174)
.+++.|.+. ++++-..+ +.|...++.......... .-...+.++++|++..|. +-+..+.|..+|+..
T Consensus 206 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 206 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred EEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 899987555 44554444 788888887543322222 233478999998666655 445567899999874
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.25 E-value=0.32 Score=38.54 Aligned_cols=144 Identities=10% Similarity=0.093 Sum_probs=84.0
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecC---CCCeEEEEE-------cCCCc-eEEEecCC-------cEEEEEcCC-
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYP---DSQVNRLEI-------TPNKH-YLAAAGNP-------HIRLFDVNS- 65 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~-~~~~~~d~-------~i~i~d~~~- 65 (174)
+.++++-...+.|++.|.+++....-.... -.....++| ++++. ++++...+ .+.+.+...
T Consensus 152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~ 231 (496)
T 3kya_A 152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD 231 (496)
T ss_dssp EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence 345555554567888888876654333322 124788999 88887 45544322 245555333
Q ss_pred CCCCC-e--EEeecCCCCEEEEEEee-CCCEEEEecCCCcEEEEeCC-------CCee--------------EEeecccC
Q 042260 66 SSPQP-V--MSYDQHTNNVMAVGFQC-DGNWMYSGSEDGTVKIWDLR-------APVC--------------QMEYESRA 120 (174)
Q Consensus 66 ~~~~~-~--~~~~~~~~~v~~~~~~~-~~~~l~t~~~dg~v~iwd~~-------~~~~--------------~~~~~~~~ 120 (174)
+.... . ..+.. -.....++.++ ++.++++-..++.|..+|+. .... ........
T Consensus 232 G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~ 310 (496)
T 3kya_A 232 GTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS 310 (496)
T ss_dssp SCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred Cceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence 22221 0 11111 12345667788 56667778888899999987 3332 11222234
Q ss_pred cEEEEEEccCCCEE-EEeeCCCcEEEEeCC
Q 042260 121 AVNTVVLHPNQTEL-ISGDQNGNIRVWDLT 149 (174)
Q Consensus 121 ~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~ 149 (174)
....++++|+++.| ++-+.+..|+.+|..
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 46799999999954 455567788886654
No 292
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.22 E-value=0.097 Score=38.97 Aligned_cols=141 Identities=9% Similarity=0.022 Sum_probs=64.7
Q ss_pred CcEEEEECCCCceeEEeecCCC-Ce-EEEEEcCCCceE-EEec------CCcEEEEEc--CCCCCCCeEEeecCCCCEEE
Q 042260 15 KTIKFWEAKSGRCYRTIQYPDS-QV-NRLEITPNKHYL-AAAG------NPHIRLFDV--NSSSPQPVMSYDQHTNNVMA 83 (174)
Q Consensus 15 ~~v~vwd~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~~-~~~~------d~~i~i~d~--~~~~~~~~~~~~~~~~~v~~ 83 (174)
..+.+||..+.+-...-..+.. .. .++... ++.++ +++. ...+..||+ .+..+..+..+.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 4788999887653322222211 12 233333 34444 4332 234667776 44333322222112221121
Q ss_pred EEEeeCCCEEEEecCC----------------------CcEEEEeCCCCeeEEe--ecc-cCcEEEEEEccCCCEEEEee
Q 042260 84 VGFQCDGNWMYSGSED----------------------GTVKIWDLRAPVCQME--YES-RAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 84 ~~~~~~~~~l~t~~~d----------------------g~v~iwd~~~~~~~~~--~~~-~~~v~~~~~~~~~~~l~s~~ 138 (174)
.+...+++.++.|+.+ ..+.+||+.+...... ... +....++. .++..++.|+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEee
Confidence 2233466777777632 2577889876543322 111 11122222 3667777787
Q ss_pred CCC------cEEEEeCCCCcceeecC
Q 042260 139 QNG------NIRVWDLTANSCSCELG 158 (174)
Q Consensus 139 ~d~------~i~iwd~~~~~~~~~~~ 158 (174)
.++ .|.+++++.++...+-+
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 543 36667998888776644
No 293
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.11 E-value=0.2 Score=36.04 Aligned_cols=113 Identities=10% Similarity=0.146 Sum_probs=70.3
Q ss_pred CCCeEEEEEcCCCceEEE-e-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee
Q 042260 35 DSQVNRLEITPNKHYLAA-A-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC 112 (174)
Q Consensus 35 ~~~v~~~~~~~~~~~~~~-~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~ 112 (174)
...+.+++++|++..+.+ . .++.|...|.. ++......+.+ ......+++.+++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 346899999987554443 3 34456666665 33222222222 35788999988888877766778888888754321
Q ss_pred ---EEee--c-----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 113 ---QMEY--E-----SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 113 ---~~~~--~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.... . .+...-.++++|.++.|.++.+.....+|.+.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 1111 1 23346899999998887777665555555554
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.08 E-value=0.53 Score=39.52 Aligned_cols=163 Identities=12% Similarity=0.028 Sum_probs=91.0
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEEe-cC-CcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAAA-GN-PHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d-~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
.+.++-...+.|.+.++........+...-....+++++|.+. ++.+- +. ..|...++.... .............
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--~~~lv~~~l~~P~ 561 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPN 561 (791)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEE
T ss_pred cEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--eEEEEeCCCCCce
Confidence 4555656667777777664433222332334578899998644 44433 23 557777775432 2222233345688
Q ss_pred EEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec-
Q 042260 83 AVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL- 157 (174)
Q Consensus 83 ~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 157 (174)
.+++.+.+. +.++-...+.|...|+........... -.....|++. .+.+..+-...+.|...|..+++....+
T Consensus 562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 899986544 455556667899999865433222221 1234566663 2344445556778888887776544333
Q ss_pred CcccceeEEEEEee
Q 042260 158 GLQYGLRTFLFYHQ 171 (174)
Q Consensus 158 ~~~~~~~~~~~~~~ 171 (174)
.....+....+||+
T Consensus 641 ~~l~~P~~i~v~h~ 654 (791)
T 3m0c_C 641 ENLLSPEDMVLFHN 654 (791)
T ss_dssp CSCSCCCCEEEESG
T ss_pred cCCCCceeEeeecc
Confidence 12223445566775
No 295
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.03 E-value=0.15 Score=37.39 Aligned_cols=145 Identities=12% Similarity=0.166 Sum_probs=73.3
Q ss_pred cEEEEEeeCC-------CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEEEec-------CCcEEEEEcCCCCCC
Q 042260 5 SVILATASYD-------KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLAAAG-------NPHIRLFDVNSSSPQ 69 (174)
Q Consensus 5 ~~~l~s~s~D-------~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~ 69 (174)
+.+++.||.+ ..+.+||..+.+-...-..+.... ..+.. .++.+++.++ ...+.+||..+.++.
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 4566777764 347888887754332211121111 12222 2445444332 134788998876554
Q ss_pred CeEEeecCCCCEEEEEEeeCCCEEEEecCC-----CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeCC-
Q 042260 70 PVMSYDQHTNNVMAVGFQCDGNWMYSGSED-----GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQN- 140 (174)
Q Consensus 70 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d- 140 (174)
.+......+.....+. .+++.++.|+.+ ..+.+||+.+......-.. +.....+.+ ++..++.|+.+
T Consensus 189 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 264 (318)
T 2woz_A 189 DLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAM 264 (318)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCC
T ss_pred ECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeec
Confidence 3322222222222222 356777777643 3577889877554322111 111222222 55666777653
Q ss_pred -------------CcEEEEeCCCCcce
Q 042260 141 -------------GNIRVWDLTANSCS 154 (174)
Q Consensus 141 -------------~~i~iwd~~~~~~~ 154 (174)
..+..||+++.+..
T Consensus 265 ~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 265 IQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp BC----CCBCCBCCCEEEEETTTTEEE
T ss_pred cCCCCceeccceeeeEEEEeCCCCEeh
Confidence 35788998887654
No 296
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.97 E-value=0.29 Score=35.60 Aligned_cols=142 Identities=12% Similarity=0.063 Sum_probs=81.4
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEec-CCc--EEEEEcCCCCCCCeEEeecCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAG-NPH--IRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
++.++++-..++.|..||..+ +....+.. ......+++.+++.++++.. ... +..+|..+++...+.... ....
T Consensus 42 ~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~ 118 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIF 118 (306)
T ss_dssp TSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSC
T ss_pred CCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-Cccc
Confidence 345666666778888888764 33333332 34678899999888766553 223 555666655433222211 1122
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEe-e----------cccCcEEEEEEccCCCEEE-EeeCCCcEEEEeC
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQME-Y----------ESRAAVNTVVLHPNQTELI-SGDQNGNIRVWDL 148 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~----------~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~ 148 (174)
...++..+.+..+++...++.|..+|......... . ..-...+.+ +|++..|. +-..++.|..+|+
T Consensus 119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~ 196 (306)
T 2p4o_A 119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPV 196 (306)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEB
T ss_pred cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEe
Confidence 33444444555566666788999999875421110 0 011234555 77777655 4455778999998
Q ss_pred CC
Q 042260 149 TA 150 (174)
Q Consensus 149 ~~ 150 (174)
..
T Consensus 197 ~~ 198 (306)
T 2p4o_A 197 DS 198 (306)
T ss_dssp CT
T ss_pred CC
Confidence 75
No 297
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.93 E-value=0.3 Score=35.41 Aligned_cols=145 Identities=12% Similarity=0.136 Sum_probs=75.9
Q ss_pred cEEEEEeeCC----CcEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEE-EecC------CcEEEEEcCCCCCCCeE
Q 042260 5 SVILATASYD----KTIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLA-AAGN------PHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 5 ~~~l~s~s~D----~~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~-~~~d------~~i~i~d~~~~~~~~~~ 72 (174)
+.+++.||.+ ..+.+||..+++-...-..+.... ..+... ++.+++ ++.+ ..+.+||..+..+..+.
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 5567777765 668889988765332222221111 122222 444444 4332 34788898776544332
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEecC---------CCcEEEEeCCCCeeEEeeccc---CcEEEEEEccCCCEEEEeeCC
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGSE---------DGTVKIWDLRAPVCQMEYESR---AAVNTVVLHPNQTELISGDQN 140 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d 140 (174)
.+...+.....+. .+++.++.|+. -..+.+||+.+......-... .....+.+ ++..++.|+.+
T Consensus 135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 210 (306)
T 3ii7_A 135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQN 210 (306)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCC
Confidence 2222222222222 36677777653 345889999876543322211 11222222 56667777654
Q ss_pred -----CcEEEEeCCCCcce
Q 042260 141 -----GNIRVWDLTANSCS 154 (174)
Q Consensus 141 -----~~i~iwd~~~~~~~ 154 (174)
..+..||+.+.+..
T Consensus 211 ~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp TTEEBCCEEEEETTTTEEE
T ss_pred CCCCCceEEEeeCCCCcEE
Confidence 35889999887544
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.67 E-value=0.43 Score=35.26 Aligned_cols=140 Identities=8% Similarity=0.039 Sum_probs=68.1
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeec----CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCC-CCCCeEEeecCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQY----PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS-SPQPVMSYDQHT 78 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~ 78 (174)
++..++ ++.++.| +.....|+....+.. ....+..+.+.+ +..++.+..+.+.. .-..+ ..........+.
T Consensus 46 ~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~ 121 (327)
T 2xbg_A 46 RHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLP 121 (327)
T ss_dssp SSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCS
T ss_pred CCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCC
Confidence 344555 4556754 333344444333322 234578888876 45555554554332 22111 111111111122
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEe
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWD 147 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 147 (174)
..+..+.+.++++.++.+...+..+-.|-...-..........+..+++.|++..++.+...+..+.+|
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 456677777777766666433333444432211111122345688899999888777664443344444
No 299
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.52 E-value=0.5 Score=34.93 Aligned_cols=111 Identities=9% Similarity=0.143 Sum_probs=62.4
Q ss_pred CCCeEEEEEcCCCceEEEecCCcEEEEEcCCC-CCCCeEEe-ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee
Q 042260 35 DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSS-SPQPVMSY-DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC 112 (174)
Q Consensus 35 ~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~ 112 (174)
...+..+.+.+++.+++.+.++.++..+...+ ....+... -.....+..+.+.+++..++.+. ++.+ ++.....+.
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t 281 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT 281 (327)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS
T ss_pred CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc
Confidence 44678888888888777776776666532111 11111100 01123578888887777666655 5655 344443332
Q ss_pred EEeec----ccCcEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 042260 113 QMEYE----SRAAVNTVVLHPNQTELISGDQNGNIRVWDL 148 (174)
Q Consensus 113 ~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (174)
-.... ....+.++.+.+++ .+++++.+|.|.-++-
T Consensus 282 W~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 282 WQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp CEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred cEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 22222 13457788887544 4666778888777654
No 300
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.42 E-value=0.5 Score=34.35 Aligned_cols=122 Identities=11% Similarity=0.132 Sum_probs=73.0
Q ss_pred CceeEEeecCCCCeEEEEEcCCCceEEEe-cCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCC--c
Q 042260 25 GRCYRTIQYPDSQVNRLEITPNKHYLAAA-GNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--T 101 (174)
Q Consensus 25 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--~ 101 (174)
.+.+..+... .....+++++++.++++. .++.|..+|.... . ..... .......+++.++|+++++..... .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~--~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q--QIHAT-VEGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E--EEEEE-CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-e--EEEEe-CCCCceeEEEcCCCcEEEEeccCCcce
Confidence 3344445332 457789999988876665 5677888886542 1 11122 235688899999999777664432 4
Q ss_pred EEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 102 VKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 102 v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
|..+|..+........ .......++..+.+..+++-..++.|..+|...+
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 6667766655432222 2223455555555554555545788888887653
No 301
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.40 E-value=1 Score=37.81 Aligned_cols=144 Identities=9% Similarity=-0.050 Sum_probs=80.8
Q ss_pred EEEEEeeCCCcEEEEECCCC----ceeEEeecCCCCeEEEEEcCCCceEE-E-ecCCcEEEEEcCCCCCCCeEEeecCCC
Q 042260 6 VILATASYDKTIKFWEAKSG----RCYRTIQYPDSQVNRLEITPNKHYLA-A-AGNPHIRLFDVNSSSPQPVMSYDQHTN 79 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~d~~i~i~d~~~~~~~~~~~~~~~~~ 79 (174)
.++++-...+.|+.+++... .....+...-....++++.+.+..|. + ...+.|.+.++..... .........
T Consensus 437 ~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~--~~l~~~~l~ 514 (791)
T 3m0c_C 437 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGS 514 (791)
T ss_dssp EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTC
T ss_pred eeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE--EEEEeCCCC
Confidence 34444444555555555432 11111221223456788876553333 3 3566788888864422 222223445
Q ss_pred CEEEEEEeeCCC-EEEEecC-CCcEEEEeCCCCeeEEeecc-cCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCCC
Q 042260 80 NVMAVGFQCDGN-WMYSGSE-DGTVKIWDLRAPVCQMEYES-RAAVNTVVLHPNQTELISG-DQNGNIRVWDLTAN 151 (174)
Q Consensus 80 ~v~~~~~~~~~~-~l~t~~~-dg~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~ 151 (174)
....+++.+.+. ++++-.. .+.|...++........... -...+.|++.+.+..|..+ .....|...|+.-.
T Consensus 515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 688999998644 4455433 36888888876543333332 2467899999877666554 44567999998743
No 302
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.07 E-value=0.69 Score=33.97 Aligned_cols=144 Identities=10% Similarity=-0.015 Sum_probs=82.3
Q ss_pred cEEEEEeeCCCcEEEEECCC---CceeEEe-ecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 5 SVILATASYDKTIKFWEAKS---GRCYRTI-QYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~---~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
+.+..+-..++.|..+++.+ +.....+ ...-....++++.+. +.+..+ ...+.|.+.++..... ........
T Consensus 42 ~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~ 119 (316)
T 1ijq_A 42 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENG 119 (316)
T ss_dssp TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTT
T ss_pred CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce--EEEEECCC
Confidence 45566666667777777665 1222222 112134567888764 444333 4567788888864321 11122234
Q ss_pred CCEEEEEEeeCCC-EEEEecCC-CcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEE-eeCCCcEEEEeCCC
Q 042260 79 NNVMAVGFQCDGN-WMYSGSED-GTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELIS-GDQNGNIRVWDLTA 150 (174)
Q Consensus 79 ~~v~~~~~~~~~~-~l~t~~~d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s-~~~d~~i~iwd~~~ 150 (174)
.....+++.|.+. .+++.... +.|...++......... ..-...+.++++|++..|.. -+..+.|..+|+..
T Consensus 120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 5678899987555 44444333 68888887643322211 22345789999987766654 44567899999874
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.02 E-value=0.82 Score=34.56 Aligned_cols=136 Identities=8% Similarity=0.066 Sum_probs=80.1
Q ss_pred CCCcEEEEECCCCc-eeEEee--c-----CCCCeEEEEEcC--CCc--eEEE-ec--CCcEEEEEcCCCCC--CCeEEee
Q 042260 13 YDKTIKFWEAKSGR-CYRTIQ--Y-----PDSQVNRLEITP--NKH--YLAA-AG--NPHIRLFDVNSSSP--QPVMSYD 75 (174)
Q Consensus 13 ~D~~v~vwd~~~~~-~~~~~~--~-----~~~~v~~~~~~~--~~~--~~~~-~~--d~~i~i~d~~~~~~--~~~~~~~ 75 (174)
.+|.|.++|.++.. ....+. . ......++.+.+ ++. ++++ .. +..+.+|++..... ..+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68999999987421 122222 1 123466777654 332 3333 22 45677887755322 2222233
Q ss_pred cC-CCCEEEEEEeeCCCEEEEec-----------------CCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe
Q 042260 76 QH-TNNVMAVGFQCDGNWMYSGS-----------------EDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 76 ~~-~~~v~~~~~~~~~~~l~t~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 137 (174)
+. ......+.+.++|.+.++.. ..|.+.-+|.. .+......-...+.++|+|+++.|..+
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYva 238 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIA 238 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEE
Confidence 22 34578889999999888764 12455556653 222222333457999999999877654
Q ss_pred -eCCCcEEEEeCCC
Q 042260 138 -DQNGNIRVWDLTA 150 (174)
Q Consensus 138 -~~d~~i~iwd~~~ 150 (174)
+..+.|..||+..
T Consensus 239 dt~~~~I~~~~~~~ 252 (355)
T 3sre_A 239 ELLAHKIHVYEKHA 252 (355)
T ss_dssp EGGGTEEEEEEECT
T ss_pred eCCCCeEEEEEECC
Confidence 4567899999874
No 304
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.89 E-value=0.98 Score=34.84 Aligned_cols=145 Identities=8% Similarity=0.028 Sum_probs=81.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecC-CCCeEEEEEcCCCce-EEEe-cCCcEEEEEcCCC--CCCCeEEeecC-
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYP-DSQVNRLEITPNKHY-LAAA-GNPHIRLFDVNSS--SPQPVMSYDQH- 77 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~-~d~~i~i~d~~~~--~~~~~~~~~~~- 77 (174)
.+.++++-..++.|..++..++......... ......++++|++.. +++. ..+.|..++.... .......+.+.
T Consensus 237 ~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~ 316 (430)
T 3tc9_A 237 NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ 316 (430)
T ss_dssp TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECT
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccC
Confidence 3456666666778888888766542222222 234678999999874 3333 4667888776432 11001111110
Q ss_pred --------------CCCEE-EEEEe--------eCCCEEEEecCCCcEEEEeCCCCeeEEeecc---------c------
Q 042260 78 --------------TNNVM-AVGFQ--------CDGNWMYSGSEDGTVKIWDLRAPVCQMEYES---------R------ 119 (174)
Q Consensus 78 --------------~~~v~-~~~~~--------~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~---------~------ 119 (174)
-..-. .+... +++.+.++-...+.|+.+|.. ......... .
T Consensus 317 g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~ 395 (430)
T 3tc9_A 317 GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GRVTTFAGRGSNGTSGYNDGDLRQE 395 (430)
T ss_dssp TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SEEEEEEECCTTSSSSCBCEETTTT
T ss_pred CCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-CcEEEEEeCCCCCCCcccCCCchhh
Confidence 11122 34442 346677777777889998843 333222211 0
Q ss_pred ---CcEEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 042260 120 ---AAVNTVVLHPN-QTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 120 ---~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~ 149 (174)
.....+++.|+ +.++++-..+..|+..+++
T Consensus 396 ~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 396 ARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 14789999994 5555565567778887764
No 305
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.88 E-value=0.35 Score=39.82 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=78.0
Q ss_pred CcEEEEEeeCCC------cEEEEECCCCceeEEeecCCCCe-EEEEEcCCCceEE-EecCC--cEEEEEcCCCCCCCeEE
Q 042260 4 PSVILATASYDK------TIKFWEAKSGRCYRTIQYPDSQV-NRLEITPNKHYLA-AAGNP--HIRLFDVNSSSPQPVMS 73 (174)
Q Consensus 4 ~~~~l~s~s~D~------~v~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~-~~~d~--~i~i~d~~~~~~~~~~~ 73 (174)
++.+++.||.++ .+.+||..+.+-...-..+.... .+++.-.++.+++ ++.+. .+.+||..+..+..+..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 456777777643 47888887754322111111111 2233322455444 44222 68899988765443322
Q ss_pred ---eecCCCCEEEEEEeeC-CCEEEEecC--C-----CcEEEEeCCCCe------eEEeec----ccCcEEEEEEccCCC
Q 042260 74 ---YDQHTNNVMAVGFQCD-GNWMYSGSE--D-----GTVKIWDLRAPV------CQMEYE----SRAAVNTVVLHPNQT 132 (174)
Q Consensus 74 ---~~~~~~~v~~~~~~~~-~~~l~t~~~--d-----g~v~iwd~~~~~------~~~~~~----~~~~v~~~~~~~~~~ 132 (174)
....+....++.+..+ ++.++.|+. + ..+..||+.+.. ...... .+.....+ ...++.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~ 609 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRK 609 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCE
Confidence 1222233333444444 667777765 2 358889987655 221111 11122222 333366
Q ss_pred EEEEeeCC--------CcEEEEeCCCCcce
Q 042260 133 ELISGDQN--------GNIRVWDLTANSCS 154 (174)
Q Consensus 133 ~l~s~~~d--------~~i~iwd~~~~~~~ 154 (174)
.++.|+.+ ..|.+||+.+....
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 77777642 45999999987654
No 306
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.65 E-value=0.87 Score=33.12 Aligned_cols=143 Identities=10% Similarity=0.038 Sum_probs=73.4
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeec--CCCCeEEEEEcCCCceE-EEec----C-------CcEEEEEcCCCCCCC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQY--PDSQVNRLEITPNKHYL-AAAG----N-------PHIRLFDVNSSSPQP 70 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~-~~~~----d-------~~i~i~d~~~~~~~~ 70 (174)
..+++.|+ ..+..||..+++-.. ... +...........++.++ +++. + ..+..||..+.++..
T Consensus 5 ~~l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 5 DLIFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred eEEEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 44566677 579999998876432 222 21223333333344544 4442 1 125678887665433
Q ss_pred eEEeecCCCCEEEEEEeeCCCEEEEecCC--------CcEEEEeCCCCeeEEeecc---cCcEEEEEEccCCCEEEEeeC
Q 042260 71 VMSYDQHTNNVMAVGFQCDGNWMYSGSED--------GTVKIWDLRAPVCQMEYES---RAAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 71 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d--------g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~ 139 (174)
+..++..+.....+. -+++.++.|+.+ ..+.++|..+......-.. +.....+. .++..++.|+.
T Consensus 82 ~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 157 (315)
T 4asc_A 82 MPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGK 157 (315)
T ss_dssp CCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred CCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCC
Confidence 222221111112222 256677777632 4588899887654322111 11122222 35666677765
Q ss_pred -C-----CcEEEEeCCCCcce
Q 042260 140 -N-----GNIRVWDLTANSCS 154 (174)
Q Consensus 140 -d-----~~i~iwd~~~~~~~ 154 (174)
+ ..+..||+.+.+..
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~ 178 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWK 178 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEE
T ss_pred CCCCcccceEEEEeCCCCeEE
Confidence 2 35899999887544
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.65 E-value=1.5 Score=35.70 Aligned_cols=164 Identities=10% Similarity=0.005 Sum_probs=87.3
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEEec--CCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAAG--NPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+.+.++-...+.|.+.++........+...-....+++++|. +.++.+-. ...|...++..... ...........
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~--~~l~~~~~~~P 173 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--FIIINSEIYWP 173 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEECSSCSSE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce--EEEEeCCCCCC
Confidence 445556666677777776643322222222234567888886 44444432 23455555543322 22222234567
Q ss_pred EEEEEeeC-CCEEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 82 MAVGFQCD-GNWMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 82 ~~~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
..+++++. ++..++-...+.|...|+.......... .......+++..+ ....+-..++.|...|..+++....+..
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~ 252 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHS 252 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCS
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEec
Confidence 88999875 4455555667789999887543222111 1122345666544 4444555677899999887765433321
Q ss_pred -ccceeEEEEEee
Q 042260 160 -QYGLRTFLFYHQ 171 (174)
Q Consensus 160 -~~~~~~~~~~~~ 171 (174)
...+....+||+
T Consensus 253 ~~~~p~~i~v~~~ 265 (619)
T 3s94_A 253 DIFSPMDIHAFSQ 265 (619)
T ss_dssp CCCCCSEEEECCG
T ss_pred CCCCCcEEEEEcc
Confidence 123445556775
No 308
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.55 E-value=2.1 Score=37.51 Aligned_cols=131 Identities=8% Similarity=0.092 Sum_probs=78.4
Q ss_pred cEEEEECCCCceeEEeecCC-CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeC-----
Q 042260 16 TIKFWEAKSGRCYRTIQYPD-SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCD----- 89 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 89 (174)
.|++.+...+..+..+..+. ..|...+.+.. .++++ .++.+..+.+..++...... ..-...+.++++.+.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~-~vvva-~g~~l~~fel~~~~L~~~~~-~~l~~evscl~i~~~~~~~~ 569 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNSS-QVVVA-VGRALYYLQIHPQELRQISH-TEMEHEVACLDITPLGDSNG 569 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECSS-EEEEE-ETTEEEEEEEETTEEEEEEE-EECSSCEEEEECCCCSSSTT
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCCC-EEEEE-ECCEEEEEEeeCCceeeecc-cCCCCceEEEEeecCCCCcc
Confidence 36666665555565665442 34666666543 33333 35667777775443222222 123567999998753
Q ss_pred -CCEEEEecC-CCcEEEEeCCCCeeEEeecc--cCcEEEEEEcc--CCCEEEEeeCCCcEEEEeCC
Q 042260 90 -GNWMYSGSE-DGTVKIWDLRAPVCQMEYES--RAAVNTVVLHP--NQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 90 -~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~ 149 (174)
..+++-|.. |++++|+++........... ...+.++.+.. ...+|..|-.||.+.-+.+.
T Consensus 570 ~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 570 LSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp CCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred cccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 368888886 99999999987554433322 23445554432 34568889999987665554
No 309
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.48 E-value=0.95 Score=37.28 Aligned_cols=147 Identities=12% Similarity=0.175 Sum_probs=78.8
Q ss_pred cEEEEEeeCC----CcEEEEECCCCceeEEe-e-----cCCCCe-EEEEEcC-CCceEEEec-C------CcEEEEEcCC
Q 042260 5 SVILATASYD----KTIKFWEAKSGRCYRTI-Q-----YPDSQV-NRLEITP-NKHYLAAAG-N------PHIRLFDVNS 65 (174)
Q Consensus 5 ~~~l~s~s~D----~~v~vwd~~~~~~~~~~-~-----~~~~~v-~~~~~~~-~~~~~~~~~-d------~~i~i~d~~~ 65 (174)
+.+++.||.+ ..+.+||..+++-...- . .+.... .+++..+ ++.+++.++ + ..+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 4566777754 46888998776533222 1 111111 2333332 445444332 2 2467888877
Q ss_pred CCCCCeEEeecCCCCEEEEEEeeCCCEEEEecCCC--cEEEEeCCCCeeEEeec------ccCcEEEEEEccC-CCEEEE
Q 042260 66 SSPQPVMSYDQHTNNVMAVGFQCDGNWMYSGSEDG--TVKIWDLRAPVCQMEYE------SRAAVNTVVLHPN-QTELIS 136 (174)
Q Consensus 66 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~------~~~~v~~~~~~~~-~~~l~s 136 (174)
..+.....+...+.....+. ..+++.++.|+.++ .+.+||..+........ ......++++..+ +..++.
T Consensus 478 ~~W~~~~~~p~~R~~h~~~~-~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 478 REWSMIKSLSHTRFRHSACS-LPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TEEEECCCCSBCCBSCEEEE-CTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CcEEECCCCCCCcccceEEE-EcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 65443332222222222222 23788888887654 69999998765443221 1112233455544 556677
Q ss_pred eeC--C-----CcEEEEeCCCCc
Q 042260 137 GDQ--N-----GNIRVWDLTANS 152 (174)
Q Consensus 137 ~~~--d-----~~i~iwd~~~~~ 152 (174)
|+. + ..+..||+.+..
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCcCCCCCeeeCcEEEEEccCCc
Confidence 765 2 358899999877
No 310
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.37 E-value=0.3 Score=40.33 Aligned_cols=144 Identities=10% Similarity=-0.033 Sum_probs=74.6
Q ss_pred cEEEEEeeCCCcEEEEECCC----CceeEEeecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCC
Q 042260 5 SVILATASYDKTIKFWEAKS----GRCYRTIQYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHT 78 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~ 78 (174)
+.++++-...+.|+.+++.+ ......+...-.....+++.+. +.++++ ...+.|.+.++..... ........
T Consensus 418 ~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~--~~l~~~~~ 495 (699)
T 1n7d_A 418 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFREQG 495 (699)
T ss_dssp TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE--EEECCCSS
T ss_pred CeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce--EEEEeCCC
Confidence 33444444556666666654 1111111111112446777743 344433 3456788888764321 11112222
Q ss_pred CCEEEEEEeeCCC-EEEEecCC-CcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEE-EEeeCCCcEEEEeCCC
Q 042260 79 NNVMAVGFQCDGN-WMYSGSED-GTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTEL-ISGDQNGNIRVWDLTA 150 (174)
Q Consensus 79 ~~v~~~~~~~~~~-~l~t~~~d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~ 150 (174)
.....+++.+.+. ++++-... +.|...++......... ..-...+.|+++|++..| ++-+..+.|..+|+..
T Consensus 496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 4456778887544 44444333 67888777543221111 112345789999876555 4445567899999864
No 311
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.04 E-value=1.5 Score=33.42 Aligned_cols=113 Identities=9% Similarity=-0.041 Sum_probs=69.4
Q ss_pred CCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC-EEEEecC-CCcEEEEeCCCCe
Q 042260 36 SQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN-WMYSGSE-DGTVKIWDLRAPV 111 (174)
Q Consensus 36 ~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~-dg~v~iwd~~~~~ 111 (174)
....++++.+. +.+..+ ...+.|.+.++.... ..............+++.|.+. ++++-.. .+.|...++....
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~--~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS--EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCc--eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 34667888763 444333 345678888876442 2222233445678899998554 4444422 4788888887543
Q ss_pred eEEeecc-cCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCC
Q 042260 112 CQMEYES-RAAVNTVVLHPNQTELISG-DQNGNIRVWDLTA 150 (174)
Q Consensus 112 ~~~~~~~-~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~ 150 (174)
....... -...+.++++|.+..|..+ +....|...|+..
T Consensus 237 ~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 237 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 3222222 2467999999877766554 4567899999874
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.03 E-value=1.7 Score=34.07 Aligned_cols=150 Identities=14% Similarity=0.264 Sum_probs=87.8
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCC----CCE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT----NNV 81 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~v 81 (174)
++||--. ..++.+||+++.+.+.++...+.-+.--..++. .++-..+..+..|++.. ...+...++.|. .+|
T Consensus 78 ~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~--~l~lVT~taVyHWsi~~-~s~P~kvFdR~~~L~~~QI 153 (494)
T 1bpo_A 78 KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVTDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQI 153 (494)
T ss_dssp SCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT--EEEEECSSEEEEEESSS-SCCCEEEEECCGGGTTCEE
T ss_pred cEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC--eEEEEcCCeeEEecccC-CCCchhheecchhcccceE
Confidence 3444433 678999999999988888876654444444443 33333456788888865 334555555442 345
Q ss_pred EEEEEeeCCCEEEEec-------CCCcEEEEeCCCCeeE-----------------------------------------
Q 042260 82 MAVGFQCDGNWMYSGS-------EDGTVKIWDLRAPVCQ----------------------------------------- 113 (174)
Q Consensus 82 ~~~~~~~~~~~l~t~~-------~dg~v~iwd~~~~~~~----------------------------------------- 113 (174)
..-..+++.++++-.+ -.|.+-+|..++...+
T Consensus 154 InY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei 233 (494)
T 1bpo_A 154 INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEV 233 (494)
T ss_dssp EEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEEC
T ss_pred EEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEc
Confidence 5445555555544322 1244555554432110
Q ss_pred --------------Eee--cc---cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 114 --------------MEY--ES---RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 114 --------------~~~--~~---~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
... .. ..-..++.+++....+..-+.-|.|.+||++++.|.+.-+-
T Consensus 234 ~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 234 GTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp SCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 000 00 11234556666666777778889999999999999987653
No 313
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.62 E-value=2.5 Score=34.46 Aligned_cols=145 Identities=9% Similarity=-0.009 Sum_probs=83.5
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCc-eEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKH-YLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
+.+..+-..++.|..+++........+...-....++++.+.+. +..+ ...+.|.+.++..... ............
T Consensus 49 ~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--~~l~~~~l~~P~ 126 (628)
T 4a0p_A 49 NRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--QVLVWKDLDSPR 126 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--EEEECSSCCCEE
T ss_pred CEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--EEEEeCCCCCcc
Confidence 44455555556666666554322222222223456788876443 3333 3456788888865422 122223445678
Q ss_pred EEEEeeC-CCEEEEe-cCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEe-eCCCcEEEEeCCCC
Q 042260 83 AVGFQCD-GNWMYSG-SEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISG-DQNGNIRVWDLTAN 151 (174)
Q Consensus 83 ~~~~~~~-~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~ 151 (174)
++++.|. |.+++|- +..+.|...++...........-...+.+++++.+..|..+ ...+.|...|+...
T Consensus 127 ~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 127 ALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 9999974 5555554 23567877777654433333344567999999977666544 45678999998753
No 314
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.43 E-value=0.65 Score=34.90 Aligned_cols=113 Identities=13% Similarity=0.170 Sum_probs=68.9
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCC-CCeEEEEEc---CCCceEEE--ecCCcEEEEEcCCCCCCCeEEeec--
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPD-SQVNRLEIT---PNKHYLAA--AGNPHIRLFDVNSSSPQPVMSYDQ-- 76 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~---~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~~-- 76 (174)
+.+++.++.||.|.-.|.++|+..-.++... .++....-. .++..++. ..|+.+..++..++..+ ..+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~--~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK--LPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE--EEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE--eeecccc
Confidence 4578899999999999999999887776541 222221100 12233433 36888888887665211 11111
Q ss_pred --CCCCEEE--------EEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeeccc
Q 042260 77 --HTNNVMA--------VGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESR 119 (174)
Q Consensus 77 --~~~~v~~--------~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~ 119 (174)
...++.. ..-...+..+++|+.+|.+.-.|+++++.+..+...
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1111221 000114567899999999999999999988877643
No 315
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.25 E-value=2.5 Score=33.46 Aligned_cols=152 Identities=10% Similarity=0.037 Sum_probs=87.5
Q ss_pred CcEEEEEeeCCCcEEEEECC-------CCce-----------eEE-eecC-CCCeEEEEEcCCCceEEE--ecCCcEEEE
Q 042260 4 PSVILATASYDKTIKFWEAK-------SGRC-----------YRT-IQYP-DSQVNRLEITPNKHYLAA--AGNPHIRLF 61 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~-------~~~~-----------~~~-~~~~-~~~v~~~~~~~~~~~~~~--~~d~~i~i~ 61 (174)
.+.++++-..++.|..+|+. ++.. ... +... ......++++|++..+.. ...+.|+.+
T Consensus 258 ~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki 337 (496)
T 3kya_A 258 NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS 337 (496)
T ss_dssp TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence 35567777788889999887 4543 111 2222 233578999999884333 356678876
Q ss_pred EcCCCC--CCCeEEeecC---------------CCCEE-EEEEe-------eCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260 62 DVNSSS--PQPVMSYDQH---------------TNNVM-AVGFQ-------CDGNWMYSGSEDGTVKIWDLRAPVCQMEY 116 (174)
Q Consensus 62 d~~~~~--~~~~~~~~~~---------------~~~v~-~~~~~-------~~~~~l~t~~~dg~v~iwd~~~~~~~~~~ 116 (174)
+..... ......+-+. -.... .+... +.+.+.++-...++|+.++... ......
T Consensus 338 d~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~v~Tia 416 (496)
T 3kya_A 338 DYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-IVSTYA 416 (496)
T ss_dssp EEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-BEEEEE
T ss_pred ecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-CEEEEe
Confidence 653221 1000111110 11233 33443 4577788888889999999543 322111
Q ss_pred cc----------------c--------CcEEEEEEccC-CCEEEEeeCCCcEEEEeCCCCcceee
Q 042260 117 ES----------------R--------AAVNTVVLHPN-QTELISGDQNGNIRVWDLTANSCSCE 156 (174)
Q Consensus 117 ~~----------------~--------~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~ 156 (174)
.. . .....+++.++ +++.++=..+..||.++++..-++..
T Consensus 417 G~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 417 GRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp ESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred cccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 10 0 23678999996 77666667788999999998776644
No 316
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=93.20 E-value=2.1 Score=32.38 Aligned_cols=134 Identities=10% Similarity=0.231 Sum_probs=81.8
Q ss_pred CCcEEEEEC--CCCceeEEeec------CC-CCeEEEEE--cCC-Cc--eEEEecCCcEEEEEcCC---CC--CCCeEEe
Q 042260 14 DKTIKFWEA--KSGRCYRTIQY------PD-SQVNRLEI--TPN-KH--YLAAAGNPHIRLFDVNS---SS--PQPVMSY 74 (174)
Q Consensus 14 D~~v~vwd~--~~~~~~~~~~~------~~-~~v~~~~~--~~~-~~--~~~~~~d~~i~i~d~~~---~~--~~~~~~~ 74 (174)
+.+|.+|++ .+++ +..+.. .. ..+..+++ ++. +. .++...++.+..|++.. +. .+.+..+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999965 4443 444311 11 44666777 663 43 34555677888888732 21 1223333
Q ss_pred ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCC-----CCeeEEeeccc---CcEEEEEE--ccCCC-EEEEee-CCCc
Q 042260 75 DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLR-----APVCQMEYESR---AAVNTVVL--HPNQT-ELISGD-QNGN 142 (174)
Q Consensus 75 ~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~-----~~~~~~~~~~~---~~v~~~~~--~~~~~-~l~s~~-~d~~ 142 (174)
.. ..++..+...+....|+.+-++.-|-.+|.+ +...+..+... ..+..+++ .+++. +|++.+ .+.+
T Consensus 177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 33 3678888888888888989888666555644 23344333222 45777777 45555 666666 3668
Q ss_pred EEEEeCC
Q 042260 143 IRVWDLT 149 (174)
Q Consensus 143 i~iwd~~ 149 (174)
..+||.+
T Consensus 256 ~~Vydr~ 262 (355)
T 3amr_A 256 YAIYDRQ 262 (355)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9999997
No 317
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.92 E-value=2.2 Score=31.87 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=60.0
Q ss_pred CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee---cCCCCEEEEEEeeC---CCE-EEEecCC-----CcEE
Q 042260 36 SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---QHTNNVMAVGFQCD---GNW-MYSGSED-----GTVK 103 (174)
Q Consensus 36 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~-l~t~~~d-----g~v~ 103 (174)
.....++|.|++.++++-..+.|++++ .+....+.... ........++++++ +.. .++-... +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 346789999999888877677888887 33222221111 12356889999987 444 4443322 5677
Q ss_pred EEeCCCC-----eeEEe-ecc----cCcEEEEEEccCCCEEEEe
Q 042260 104 IWDLRAP-----VCQME-YES----RAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 104 iwd~~~~-----~~~~~-~~~----~~~v~~~~~~~~~~~l~s~ 137 (174)
.++.... +.+.. +.. ......++|.|++...++.
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 7776532 11111 221 1234789999999876664
No 318
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.64 E-value=2.3 Score=31.38 Aligned_cols=140 Identities=9% Similarity=0.087 Sum_probs=69.7
Q ss_pred cEEEEEeeCC-CcEEEEECCC-CceeEEeec-C-CCCe-EEEEEcCCCceEE-Eec-C---------CcEEEEEcCCCCC
Q 042260 5 SVILATASYD-KTIKFWEAKS-GRCYRTIQY-P-DSQV-NRLEITPNKHYLA-AAG-N---------PHIRLFDVNSSSP 68 (174)
Q Consensus 5 ~~~l~s~s~D-~~v~vwd~~~-~~~~~~~~~-~-~~~v-~~~~~~~~~~~~~-~~~-d---------~~i~i~d~~~~~~ 68 (174)
+.+++.||.+ ..+..||..+ ......+.. + .... .+++.. ++.+++ ++. + ..+.+||..+.++
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 4566666654 4588888864 122222221 1 1111 122222 344443 333 1 3478889877654
Q ss_pred CCeEEee-cCCCCEEEEEEeeCCCEEEEecCC---------------------------------------CcEEEEeCC
Q 042260 69 QPVMSYD-QHTNNVMAVGFQCDGNWMYSGSED---------------------------------------GTVKIWDLR 108 (174)
Q Consensus 69 ~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d---------------------------------------g~v~iwd~~ 108 (174)
..+.... ..+.....+. .+++.++.|+.+ ..+.++|+.
T Consensus 99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred EECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 4333222 2222222222 567777888754 478899988
Q ss_pred CCeeEEeeccc--CcE-EEEEEccCCCEEEEeeC------CCcEEEEeC
Q 042260 109 APVCQMEYESR--AAV-NTVVLHPNQTELISGDQ------NGNIRVWDL 148 (174)
Q Consensus 109 ~~~~~~~~~~~--~~v-~~~~~~~~~~~l~s~~~------d~~i~iwd~ 148 (174)
+......-... ... .+++. .++..++.|+. ...+..||+
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred CCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence 76544322211 111 22222 25566666654 235777887
No 319
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=92.59 E-value=2.3 Score=31.31 Aligned_cols=143 Identities=10% Similarity=0.047 Sum_probs=78.7
Q ss_pred EEEEEeeCCCcEEEEECCCCceeE-EeecCCCCeEEEEEcCC-CceEEE-ecCCcEEEEEcCCCCCCCeEEeecCCCCEE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYR-TIQYPDSQVNRLEITPN-KHYLAA-AGNPHIRLFDVNSSSPQPVMSYDQHTNNVM 82 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~ 82 (174)
.+..+-...+.|..++..++.... .+...-....++++.+. +.+..+ ...+.|.++++..... ............
T Consensus 48 ~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~~~~~~P~ 125 (318)
T 3sov_A 48 LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--KVLFWQELDQPR 125 (318)
T ss_dssp EEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSSEE
T ss_pred EEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--EEEEeCCCCCcc
Confidence 334444444555555554432111 11111123456777764 333333 3456788888865322 222223445678
Q ss_pred EEEEeeCCCE-EEEe-cCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEE-EeeCCCcEEEEeCCC
Q 042260 83 AVGFQCDGNW-MYSG-SEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELI-SGDQNGNIRVWDLTA 150 (174)
Q Consensus 83 ~~~~~~~~~~-l~t~-~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~ 150 (174)
.+++.+.+.. +++- +..+.|...++.......... .-...+.++++|++..|. +-+..+.|..+|+..
T Consensus 126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 8999875444 4444 235788888876432222122 224568999998666655 445577899999874
No 320
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=92.37 E-value=3.8 Score=33.33 Aligned_cols=164 Identities=7% Similarity=0.010 Sum_probs=90.6
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCC-CceEEEe-c-CCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPN-KHYLAAA-G-NPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
+.+..+-...+.|.+.++.......-+...-....+++++|. +.++.+- + .+.|...++.......+ . ......
T Consensus 92 ~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l--~-~~~~~P 168 (628)
T 4a0p_A 92 KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL--V-PNVGRA 168 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--E-CSCSSE
T ss_pred CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE--E-CCCCCc
Confidence 344555555666777776543322222222334678999985 4444443 2 34566666654432222 2 244667
Q ss_pred EEEEEeeCCC-EEEEecCCCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecC-c
Q 042260 82 MAVGFQCDGN-WMYSGSEDGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELG-L 159 (174)
Q Consensus 82 ~~~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~ 159 (174)
..++++++++ ..++-...+.|...|+...........-.....+++.. +....+-..++.|...|..++.....+. .
T Consensus 169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~ 247 (628)
T 4a0p_A 169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGH 247 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECS
T ss_pred ceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecC
Confidence 8899998655 45555667889999986533222222223456777754 4444455557889999987665433221 1
Q ss_pred ccceeEEEEEeec
Q 042260 160 QYGLRTFLFYHQD 172 (174)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (174)
...+.....||+.
T Consensus 248 ~~~p~~i~v~~~~ 260 (628)
T 4a0p_A 248 LDYVMDILVFHSS 260 (628)
T ss_dssp CCSCCEEEEECGG
T ss_pred CCCcceeeeeeec
Confidence 1234455667753
No 321
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.30 E-value=3.8 Score=33.20 Aligned_cols=145 Identities=10% Similarity=0.168 Sum_probs=85.1
Q ss_pred EEEEECCC----Cc-eeEEeecCCCCeEEEEEcCCCceEEEec--CCcEEEEEcCC------CCC----CCeEEeecCCC
Q 042260 17 IKFWEAKS----GR-CYRTIQYPDSQVNRLEITPNKHYLAAAG--NPHIRLFDVNS------SSP----QPVMSYDQHTN 79 (174)
Q Consensus 17 v~vwd~~~----~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~~i~i~d~~~------~~~----~~~~~~~~~~~ 79 (174)
+++-|.+. +. ..+.+..+ ....++.++|+|+++++++ +..+.++|++. .+. ..+.....-..
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~p-ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVP-KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEES-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred eeEEccccccccCCceEEEEeCC-CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 66777654 22 23333333 3466788999999887764 67899999862 111 11111112234
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCC----------eeEEeecccCcEEEEEE------ccCCCEEEEe---eCC
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP----------VCQMEYESRAAVNTVVL------HPNQTELISG---DQN 140 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~----------~~~~~~~~~~~v~~~~~------~~~~~~l~s~---~~d 140 (174)
..+..+|.++|+...|---|..|--|++... .++..+.-+..+--+.- .|+++.|++. |.|
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skd 458 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKD 458 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTT
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccc
Confidence 5778899999955555568999999998642 23333333444444433 4677888775 445
Q ss_pred CcE----------EEEeCCCC--cceeecCcccc
Q 042260 141 GNI----------RVWDLTAN--SCSCELGLQYG 162 (174)
Q Consensus 141 ~~i----------~iwd~~~~--~~~~~~~~~~~ 162 (174)
+.+ .|.||.-. ..+.+.+.-..
T Consensus 459 rfl~vGpl~pen~QlidIsGdkM~lv~D~P~~~E 492 (638)
T 3sbq_A 459 RFLPVGPLHPENDQLIDISGDEMKLVHDGPTFAE 492 (638)
T ss_dssp SSCCCSSSCCEEEEEEECSSSSCEEEEEEEESSC
T ss_pred cCcCCCCCCCCcceeEecCCCceEEEecCCCCCC
Confidence 543 77888743 34455443333
No 322
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.15 E-value=2.8 Score=31.34 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=60.0
Q ss_pred CCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEee---cCCCCEEEEEEeeC----CCEEEEecC---C----Cc
Q 042260 36 SQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYD---QHTNNVMAVGFQCD----GNWMYSGSE---D----GT 101 (174)
Q Consensus 36 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~----~~~l~t~~~---d----g~ 101 (174)
.....++|.|++.++++-.++.|+++|. .+. ..+.... ........++++++ +.+.++-+. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4567899999998888776788887763 332 2222111 12356889999986 444444332 3 56
Q ss_pred EEEEeCCCC-------eeEEe-ec--ccCcEEEEEEccCCCEEEEee
Q 042260 102 VKIWDLRAP-------VCQME-YE--SRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 102 v~iwd~~~~-------~~~~~-~~--~~~~v~~~~~~~~~~~l~s~~ 138 (174)
|..|+.... +.+.. +. .......++|.|++...++.+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 777776543 11111 11 112357899999998777643
No 323
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=91.46 E-value=3.6 Score=31.07 Aligned_cols=151 Identities=15% Similarity=0.281 Sum_probs=85.1
Q ss_pred cEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCC----CC
Q 042260 5 SVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHT----NN 80 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~ 80 (174)
.++||--. ..++.+||+++.+.+.++...+. |.-=.|-.... ++-..+..+..|++.. ...+...++.|. .+
T Consensus 78 ~~ViALra-g~~LQiFnletK~klks~~~~e~-VvfWkWis~~~-L~lVT~taVyHWs~~~-~s~P~kvFdR~~~L~~~Q 153 (365)
T 2xzh_A 78 SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNT-VALVTDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQ 153 (365)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEEECSSC-EEEEEECSSSE-EEEEESSEEEEEESST-TCCCEEEEECCGGGTTCE
T ss_pred ccEEEEec-CCeEEEechHHhhhhcceecCCc-cEEEEecCCCe-EEEEcCCcEEEEcccC-CCCCceeeecchhcccce
Confidence 34444443 67899999999999988887654 43333433323 3333456688888865 234444454442 34
Q ss_pred EEEEEEeeCCCEEEEecC-------CCcEEEEeCCCCeeE--------------------------------------Ee
Q 042260 81 VMAVGFQCDGNWMYSGSE-------DGTVKIWDLRAPVCQ--------------------------------------ME 115 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~-------dg~v~iwd~~~~~~~--------------------------------------~~ 115 (174)
+..-..+++.++++-.+- .|.+.+|..++...+ .+
T Consensus 154 IInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiE 233 (365)
T 2xzh_A 154 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 233 (365)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence 444444555554333221 244555554432110 00
Q ss_pred ecc----------------------cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 116 YES----------------------RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 116 ~~~----------------------~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
..+ ..-..++.+++....+..-+.-|.|.+||++++.|.+.-+-
T Consensus 234 i~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI 299 (365)
T 2xzh_A 234 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 299 (365)
T ss_dssp CSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred cCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc
Confidence 000 11134455555556677778889999999999999987553
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.18 E-value=3.2 Score=30.06 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=72.4
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEE-eecCCCCeEEEEEcCCCceEEEec-----CC-------cEEEEEcCCCCCCCeE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRT-IQYPDSQVNRLEITPNKHYLAAAG-----NP-------HIRLFDVNSSSPQPVM 72 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~-----d~-------~i~i~d~~~~~~~~~~ 72 (174)
.+++-|+. .+..||..+++-... ...+...........++.+++.++ ++ .+..||..+.++..+.
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 45666664 389999988765431 111122222222333455544443 11 1667787766543332
Q ss_pred EeecCCCCEEEEEEeeCCCEEEEecCC-------CcEEEEeCCCCeeEEeecccCc-E-EEEEEccCCCEEEEeeCC---
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMYSGSED-------GTVKIWDLRAPVCQMEYESRAA-V-NTVVLHPNQTELISGDQN--- 140 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-------g~v~iwd~~~~~~~~~~~~~~~-v-~~~~~~~~~~~l~s~~~d--- 140 (174)
.+...+.....+.+ +++.++.|+.+ ..+.++|+.+......-..+.+ . .+++. .++..++.|+.+
T Consensus 95 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 95 PLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp CBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 22222222222222 56777777653 3578888887654432221111 1 11222 356666666642
Q ss_pred ---CcEEEEeCCCCcce
Q 042260 141 ---GNIRVWDLTANSCS 154 (174)
Q Consensus 141 ---~~i~iwd~~~~~~~ 154 (174)
..+..||+.+.+..
T Consensus 172 ~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp CBCCCEEEEETTTTEEE
T ss_pred CccceEEEEcCCCCEEE
Confidence 35899999887644
No 325
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.90 E-value=0.53 Score=40.31 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=32.9
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 121 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.+.+++..++..++++-+.|+++|+|++.++.|+.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5788888888999999999999999999999988653
No 326
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=89.87 E-value=4.9 Score=30.07 Aligned_cols=96 Identities=9% Similarity=0.149 Sum_probs=60.9
Q ss_pred CCcEEEEECC---CCceeEEeecC-------------CCCeEEEEEcCCCceEE-EecC-CcEEEEEcCCCCCCCeEEe-
Q 042260 14 DKTIKFWEAK---SGRCYRTIQYP-------------DSQVNRLEITPNKHYLA-AAGN-PHIRLFDVNSSSPQPVMSY- 74 (174)
Q Consensus 14 D~~v~vwd~~---~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~-~~~d-~~i~i~d~~~~~~~~~~~~- 74 (174)
+..|..||+. +++.+...... .....+++..++|...+ .+.. +.|...+.. ... ...+
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G~~-~~~~~ 175 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD--GKT-VSTFA 175 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT--SCC-EEEEE
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC--CCE-Eeeee
Confidence 6779999998 78776555421 12378899999877555 3434 433333332 211 1111
Q ss_pred -e----cCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCee
Q 042260 75 -D----QHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVC 112 (174)
Q Consensus 75 -~----~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~ 112 (174)
. ........+++.|+++.|+....+|.+.-+|++.+..
T Consensus 176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~ 218 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYA 218 (334)
T ss_dssp ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSC
T ss_pred ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc
Confidence 1 1123366899999998877776699999999986543
No 327
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.78 E-value=0.77 Score=40.08 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=31.5
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeec
Q 042260 121 AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCEL 157 (174)
Q Consensus 121 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 157 (174)
.+.+++..++..++++-+.|+++|+||+.++.|+.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4566677788899999999999999999999998663
No 328
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=89.65 E-value=5 Score=29.85 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=48.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCce--eEEee---cCCCCeEEEEEcCC----CceEEE-ecC-----CcEEEEEcCCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRC--YRTIQ---YPDSQVNRLEITPN----KHYLAA-AGN-----PHIRLFDVNSSSP 68 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~----~~~~~~-~~d-----~~i~i~d~~~~~~ 68 (174)
++.++++ ..++.|++++ +++. +..+. ........++++|+ +.+.++ ... ..|..++......
T Consensus 41 dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~ 117 (352)
T 2ism_A 41 DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERG 117 (352)
T ss_dssp TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCE
T ss_pred CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCc
Confidence 4555544 4568888888 3332 22221 12345789999997 344333 222 4566677653311
Q ss_pred ---CCeEE-ee---cCCCCEEEEEEeeCCCEEEEec
Q 042260 69 ---QPVMS-YD---QHTNNVMAVGFQCDGNWMYSGS 97 (174)
Q Consensus 69 ---~~~~~-~~---~~~~~v~~~~~~~~~~~l~t~~ 97 (174)
..+.. +. ........++|.++|.+.++.+
T Consensus 118 ~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 118 VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 11111 22 1111235789999998777754
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=89.39 E-value=4.3 Score=28.73 Aligned_cols=133 Identities=11% Similarity=-0.008 Sum_probs=71.4
Q ss_pred cEEEEEeeCCCcEEEEECCCCc--e----eEEeec-CCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeE----E
Q 042260 5 SVILATASYDKTIKFWEAKSGR--C----YRTIQY-PDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVM----S 73 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~~--~----~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~----~ 73 (174)
+.+|.+...| +++.=....+. . ...+-. .=..+..++|+|++.+.+. .++.+.-.+..+.....-. .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccE
Confidence 4467777777 54433332222 1 111111 0135779999998887666 5664433333221111110 0
Q ss_pred e--ecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeE------Eee--cccCcEEEEEEccCCCEEEEeeCCCcE
Q 042260 74 Y--DQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQ------MEY--ESRAAVNTVVLHPNQTELISGDQNGNI 143 (174)
Q Consensus 74 ~--~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~------~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i 143 (174)
. .+.. ...++.|.++|.+.+. .||.|.-++-.+.... ..+ ..-..+..+.+.|++.+.+.. |+.+
T Consensus 82 IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 82 IGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp EECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred ecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 0 0111 1467788889987776 5688887775321110 011 112467999999999977766 7764
Q ss_pred E
Q 042260 144 R 144 (174)
Q Consensus 144 ~ 144 (174)
.
T Consensus 157 y 157 (236)
T 1tl2_A 157 Y 157 (236)
T ss_dssp E
T ss_pred E
Confidence 3
No 330
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=86.16 E-value=0.64 Score=34.93 Aligned_cols=63 Identities=10% Similarity=0.227 Sum_probs=41.3
Q ss_pred cCCCcEEEEeCCCCeeEEeeccc-----CcEEE---EEE-c----cCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 97 SEDGTVKIWDLRAPVCQMEYESR-----AAVNT---VVL-H----PNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 97 ~~dg~v~iwd~~~~~~~~~~~~~-----~~v~~---~~~-~----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
..||.+..+|..++.....+..+ .++.. ..+ . -.+..+++|+.+|.+.-.|+++++..++++.
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 68999999998876544333221 22221 000 0 0456788999999999999999998887653
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.01 E-value=10 Score=29.39 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=58.7
Q ss_pred CCeEEEEEcCCCceEEEecCC-cEEEEEcCCCCCCCeEEeec------CCCCEEEEEEeeC----CCEEEEecC------
Q 042260 36 SQVNRLEITPNKHYLAAAGNP-HIRLFDVNSSSPQPVMSYDQ------HTNNVMAVGFQCD----GNWMYSGSE------ 98 (174)
Q Consensus 36 ~~v~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~----~~~l~t~~~------ 98 (174)
...+.++|.|++.++++-..+ .|++++..++....+..+.. .......++++|+ +.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 356799999999988877654 57777654443222222211 2356789999984 444444332
Q ss_pred ------CCcEEEEeCCC-------CeeEEe-ec--ccCcEEEEEEccCCCEEEEee
Q 042260 99 ------DGTVKIWDLRA-------PVCQME-YE--SRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 99 ------dg~v~iwd~~~-------~~~~~~-~~--~~~~v~~~~~~~~~~~l~s~~ 138 (174)
...|.-++... .+.+.. +. .......++|.|++.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 12444444321 111221 11 124578999999998766644
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=84.61 E-value=11 Score=28.31 Aligned_cols=109 Identities=9% Similarity=0.043 Sum_probs=62.5
Q ss_pred EeecCCCCeEEEEEcCCCceEEEec-CCcEEEEEcCCCCCCCeEEe----ecCCCCEEEEEEeeC----CCEEEEe--cC
Q 042260 30 TIQYPDSQVNRLEITPNKHYLAAAG-NPHIRLFDVNSSSPQPVMSY----DQHTNNVMAVGFQCD----GNWMYSG--SE 98 (174)
Q Consensus 30 ~~~~~~~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~----~~~l~t~--~~ 98 (174)
.+...-...+.++|.|++.++++-. .+.|++++...+....+... .........++++|+ +.+.++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3333334578999999999888876 77788877544432222111 122456889999884 4443332 23
Q ss_pred CCcEEEEeCCC----------CeeEEe-ec--ccCcEEEEEEccCCCEEEEee
Q 042260 99 DGTVKIWDLRA----------PVCQME-YE--SRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 99 dg~v~iwd~~~----------~~~~~~-~~--~~~~v~~~~~~~~~~~l~s~~ 138 (174)
++.|.-|.... .+.+.. +. .......++|.|++.+.++.+
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 44555454432 122221 21 123456799999998777643
No 333
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=84.25 E-value=11 Score=28.09 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=66.2
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc-eeEEee---cCCCCeEEEEEcCC----CceEEEec----C----CcEEEEEcCCCC
Q 042260 4 PSVILATASYDKTIKFWEAKSGR-CYRTIQ---YPDSQVNRLEITPN----KHYLAAAG----N----PHIRLFDVNSSS 67 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~~~~~~~----d----~~i~i~d~~~~~ 67 (174)
++.++++ ..++.|+++| .+++ .+..+. ........++++|+ +.+.++-. + ..|..++.....
T Consensus 39 dG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~ 116 (354)
T 3a9g_A 39 GGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGST 116 (354)
T ss_dssp TTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSS
T ss_pred CCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCC
Confidence 4555544 4558888887 3454 222211 12345789999996 44444322 2 446666665431
Q ss_pred -----CCCeEE-eec-CCCCEEEEEEeeCCCEEEEecCC-------------CcEEEEeCCCC---------eeEEeecc
Q 042260 68 -----PQPVMS-YDQ-HTNNVMAVGFQCDGNWMYSGSED-------------GTVKIWDLRAP---------VCQMEYES 118 (174)
Q Consensus 68 -----~~~~~~-~~~-~~~~v~~~~~~~~~~~l~t~~~d-------------g~v~iwd~~~~---------~~~~~~~~ 118 (174)
.+.+.. +.. .......++|.++|++.++.+.. |.|.-.|.... ..+....+
T Consensus 117 ~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~ 196 (354)
T 3a9g_A 117 FKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH 196 (354)
T ss_dssp CCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC
T ss_pred cCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc
Confidence 111111 211 11124568899999987775432 34544444321 11222222
Q ss_pred cCcEEEEEEcc-CCCEEEE
Q 042260 119 RAAVNTVVLHP-NQTELIS 136 (174)
Q Consensus 119 ~~~v~~~~~~~-~~~~l~s 136 (174)
.....++|+| ++...++
T Consensus 197 -rnp~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 197 -RNPQGIDWHRASGVMVAT 214 (354)
T ss_dssp -SCCCEEEECTTTCCEEEE
T ss_pred -CCcceEEEeCCCCCEEEE
Confidence 3357899999 5665444
No 334
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=83.72 E-value=2.7 Score=34.06 Aligned_cols=74 Identities=11% Similarity=0.106 Sum_probs=53.2
Q ss_pred CCCEEEEEEeeCCCEEEEe-cCCCcEEEEeCCCC-------------eeEEeecccCcEEEEEEccCCCEEEEeeCCCcE
Q 042260 78 TNNVMAVGFQCDGNWMYSG-SEDGTVKIWDLRAP-------------VCQMEYESRAAVNTVVLHPNQTELISGDQNGNI 143 (174)
Q Consensus 78 ~~~v~~~~~~~~~~~l~t~-~~dg~v~iwd~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i 143 (174)
......+..+|+|++++.+ -.+.++.++|+++- ......+..-...-.+|.++|+-..+---|.+|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence 3556678889999986665 45789999998741 112233445567888999998555555579999
Q ss_pred EEEeCCCC
Q 042260 144 RVWDLTAN 151 (174)
Q Consensus 144 ~iwd~~~~ 151 (174)
--||+...
T Consensus 402 vkWni~~a 409 (638)
T 3sbq_A 402 VKWNMEEA 409 (638)
T ss_dssp EEEEHHHH
T ss_pred EEEeccHH
Confidence 99999865
No 335
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=83.62 E-value=12 Score=28.06 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=69.6
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCcee--EEe----ecCCCCeEEEEEcCC----CceEEE-e--cCCcEEEEEcCCC---
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCY--RTI----QYPDSQVNRLEITPN----KHYLAA-A--GNPHIRLFDVNSS--- 66 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~--~~~----~~~~~~v~~~~~~~~----~~~~~~-~--~d~~i~i~d~~~~--- 66 (174)
.++.++++-...|.|++++..+++.. ..+ .........++++|+ +.+.++ + .+..|.-|.+...
T Consensus 41 pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~ 120 (347)
T 3das_A 41 PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPS 120 (347)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCT
T ss_pred CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcc
Confidence 35666766666899999986655432 111 112445789999984 444332 2 2334544555431
Q ss_pred --C---CCCeEE-eec-CCCCEEEEEEeeCCCEEEEecC-------------CCcEEEEeCCCC---------eeEEeec
Q 042260 67 --S---PQPVMS-YDQ-HTNNVMAVGFQCDGNWMYSGSE-------------DGTVKIWDLRAP---------VCQMEYE 117 (174)
Q Consensus 67 --~---~~~~~~-~~~-~~~~v~~~~~~~~~~~l~t~~~-------------dg~v~iwd~~~~---------~~~~~~~ 117 (174)
. .+.+.. +.. .......+.|.++|++.++.+. .|.|.=.+.... ..+....
T Consensus 121 ~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G 200 (347)
T 3das_A 121 GEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYG 200 (347)
T ss_dssp TCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBC
T ss_pred cccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeC
Confidence 1 111111 111 1112456889999998887542 233333343321 1122223
Q ss_pred ccCcEEEEEEccCCCEEEE
Q 042260 118 SRAAVNTVVLHPNQTELIS 136 (174)
Q Consensus 118 ~~~~v~~~~~~~~~~~l~s 136 (174)
+ .....++|+|++...++
T Consensus 201 ~-RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 201 H-RNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp C-SBCCEEEECTTCCEEEE
T ss_pred C-CCcceEEECCCCCEEEE
Confidence 3 34578899998765554
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.05 E-value=1.1 Score=31.73 Aligned_cols=67 Identities=6% Similarity=-0.086 Sum_probs=42.7
Q ss_pred CCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE--------EEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 79 NNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV--------NTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v--------~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
.++..++|+|+|.+.+. .+|.+.--+..+......+.....| ..+.|.|++.+.++ .||.|.-++--
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46779999998885544 6676655554432222111222223 78899999997777 66888877753
No 337
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=82.43 E-value=13 Score=27.61 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCc-eEEEecCCcEEEEEcCCCCCCCeEEe----ecCCCCEEEEEEeeC----CCEEEEecC-------CC
Q 042260 37 QVNRLEITPNKH-YLAAAGNPHIRLFDVNSSSPQPVMSY----DQHTNNVMAVGFQCD----GNWMYSGSE-------DG 100 (174)
Q Consensus 37 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~----~~~l~t~~~-------dg 100 (174)
....++|.|++. ++++-..+.|++++........+... .........++++|+ +.+.++-.. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 467899999998 88877778888887432111111111 112345789999984 444444332 22
Q ss_pred cEEEEeCCCC-------eeEEe-ec----ccCcEEEEEEccCCCEEEEee
Q 042260 101 TVKIWDLRAP-------VCQME-YE----SRAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 101 ~v~iwd~~~~-------~~~~~-~~----~~~~v~~~~~~~~~~~l~s~~ 138 (174)
.|.-+++... +.+.. +. .......++|.|++.+.++.+
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 4555555321 11111 11 112246799999997666543
No 338
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=81.87 E-value=2.4 Score=35.22 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=28.7
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEeCCCCcceeecCc
Q 042260 122 VNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELGL 159 (174)
Q Consensus 122 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 159 (174)
|.++.+ ++.++++-+.|.++|+||++++.|+.+..+
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444444 478999999999999999999998866543
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=81.51 E-value=17 Score=33.01 Aligned_cols=105 Identities=15% Similarity=0.266 Sum_probs=64.7
Q ss_pred CcEEEEEeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecC----CC
Q 042260 4 PSVILATASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQH----TN 79 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~ 79 (174)
..++||-- ...++.|||+++.+.+.++..++..+---..++. .++-..+..+..|++.. ...|...+..| ..
T Consensus 76 ~~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~--~l~lVT~~aVyHW~~~~-~s~P~k~fdR~~~L~~~ 151 (1630)
T 1xi4_A 76 ASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVTDNAVYHWSMEG-ESQPVKMFDRHSSLAGC 151 (1630)
T ss_pred CcceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCC--eeEEEcCCeEEEeccCC-CCccHHHHhcchhcccC
Confidence 34444443 3678999999988888777766543333333333 33334466799999964 33444444444 45
Q ss_pred CEEEEEEeeCCCEEEEec-------CCCcEEEEeCCCCee
Q 042260 80 NVMAVGFQCDGNWMYSGS-------EDGTVKIWDLRAPVC 112 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~-------~dg~v~iwd~~~~~~ 112 (174)
+|..-..+++.++++-.+ -.|.+-+|+..+...
T Consensus 152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s 191 (1630)
T 1xi4_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS 191 (1630)
T ss_pred eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc
Confidence 666667777888765432 347888888876543
No 340
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.71 E-value=3.6 Score=35.27 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=31.0
Q ss_pred CEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260 80 NVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY 116 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~ 116 (174)
.+.+++..++..++++-+.|+.+|+|++.+..++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4566677778889999999999999999998877654
No 341
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=78.61 E-value=34 Score=30.11 Aligned_cols=162 Identities=13% Similarity=0.076 Sum_probs=74.7
Q ss_pred cEEEEEeeC-CCcEEEEECCCCceeEEeecCC-CCeEEEEEc--CCCc-eEEEecCCcEEEEEcC--CCCCCCeEE-eec
Q 042260 5 SVILATASY-DKTIKFWEAKSGRCYRTIQYPD-SQVNRLEIT--PNKH-YLAAAGNPHIRLFDVN--SSSPQPVMS-YDQ 76 (174)
Q Consensus 5 ~~~l~s~s~-D~~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~~-~~~~~~d~~i~i~d~~--~~~~~~~~~-~~~ 76 (174)
+.+++.|.+ |++++|+++.+-+.+....... ....++.+. .... ++++-.||.+.-+.+. ++....... +-+
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG 650 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG 650 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC
T ss_pred ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC
Confidence 457888987 9999999998766665544322 233333332 1223 3444567765444443 332211111 112
Q ss_pred CCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEeecccCcE-EEEEEccC--CCEEEEeeCCCcEEEEeCCCCc-
Q 042260 77 HTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEYESRAAV-NTVVLHPN--QTELISGDQNGNIRVWDLTANS- 152 (174)
Q Consensus 77 ~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~v-~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~- 152 (174)
..++.=..+...+..-+.+..++...++.-+.. ....--.-.++ ....|+-. .+-++..+ ++.++|.-+.+-.
T Consensus 651 -~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~ 727 (1158)
T 3ei3_A 651 -TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK-LVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK 727 (1158)
T ss_dssp -SSCCEEEEEESSSCEEEEEESSSCEEEEESSSS-EEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS
T ss_pred -CCceEEEEEeeCCceeEEEECCCCEEEEEcCCc-eEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC
Confidence 222322223333333222233344444433322 22111111122 23334321 13344333 4569998886533
Q ss_pred -ceeecCcccceeEEEEE
Q 042260 153 -CSCELGLQYGLRTFLFY 169 (174)
Q Consensus 153 -~~~~~~~~~~~~~~~~~ 169 (174)
...++++.+.+++++++
T Consensus 728 ~~~~~ipL~~Tprri~y~ 745 (1158)
T 3ei3_A 728 LHIRTVPLYESPRKICYQ 745 (1158)
T ss_dssp EEEEEEECSSEEEEEEEE
T ss_pred eeEEEEeCCCCceEEEEc
Confidence 22445677777666654
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=77.14 E-value=18 Score=32.89 Aligned_cols=142 Identities=12% Similarity=0.261 Sum_probs=77.2
Q ss_pred CCcEEEEECCCC-ceeEEeecC----CCCeEEEEEcCCCceEEE-e---c----CCcEEEEEcCCCCCCCeEEeecCCCC
Q 042260 14 DKTIKFWEAKSG-RCYRTIQYP----DSQVNRLEITPNKHYLAA-A---G----NPHIRLFDVNSSSPQPVMSYDQHTNN 80 (174)
Q Consensus 14 D~~v~vwd~~~~-~~~~~~~~~----~~~v~~~~~~~~~~~~~~-~---~----d~~i~i~d~~~~~~~~~~~~~~~~~~ 80 (174)
+..|..|++... .+...+.-| ..+|-....+++.+.++- | . .|.+.+|..+.+..+. ..+|...
T Consensus 124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~---iegha~~ 200 (1630)
T 1xi4_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---IEGHAAS 200 (1630)
T ss_pred CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh---hhHhHhh
Confidence 346889988642 222222222 456766677777665432 1 1 3567788775443222 2334332
Q ss_pred EEEEEEee---CCCEEEEec---CCCcEEEEeCCCC-e--e-----EE--eecc---cCcEEEEEEccCCCEEEEeeCCC
Q 042260 81 VMAVGFQC---DGNWMYSGS---EDGTVKIWDLRAP-V--C-----QM--EYES---RAAVNTVVLHPNQTELISGDQNG 141 (174)
Q Consensus 81 v~~~~~~~---~~~~l~t~~---~dg~v~iwd~~~~-~--~-----~~--~~~~---~~~v~~~~~~~~~~~l~s~~~d~ 141 (174)
........ ....++.+. ..+.++|-++..+ . . .. .+.. ..-..++..++....+...+.-|
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G 280 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG 280 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCc
Confidence 22222110 111222221 2368888887543 1 0 00 0111 12346777788777888888999
Q ss_pred cEEEEeCCCCcceeecC
Q 042260 142 NIRVWDLTANSCSCELG 158 (174)
Q Consensus 142 ~i~iwd~~~~~~~~~~~ 158 (174)
.|.++|++++.|.+.-+
T Consensus 281 ~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 281 YIHLYDLETGTCIYMNR 297 (1630)
T ss_pred eEEEEecccchhhhhcc
Confidence 99999999999987644
No 343
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.85 E-value=3.5 Score=36.06 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=28.9
Q ss_pred EEEEEEeeCCCEEEEecCCCcEEEEeCCCCeeEEee
Q 042260 81 VMAVGFQCDGNWMYSGSEDGTVKIWDLRAPVCQMEY 116 (174)
Q Consensus 81 v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~ 116 (174)
+.+++...+..++++-+.|+.+|+||+.+..++.+.
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 344455567789999999999999999998877654
No 344
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=72.71 E-value=28 Score=26.15 Aligned_cols=133 Identities=12% Similarity=0.168 Sum_probs=76.6
Q ss_pred CCcEEEEECCCC--ce--eEEeecC-CCCeEEEEEcCCCceEEEec----C------------CcEEEEEcCCCCCCCeE
Q 042260 14 DKTIKFWEAKSG--RC--YRTIQYP-DSQVNRLEITPNKHYLAAAG----N------------PHIRLFDVNSSSPQPVM 72 (174)
Q Consensus 14 D~~v~vwd~~~~--~~--~~~~~~~-~~~v~~~~~~~~~~~~~~~~----d------------~~i~i~d~~~~~~~~~~ 72 (174)
+.++.+|++..+ .. +..+... -...+++.+.+++.+.++.. | ..-++|-+..++..
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~--- 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR--- 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCE---
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEE---
Confidence 456777765442 21 2223221 23468888988888766532 1 22355555443222
Q ss_pred EeecCCCCEEEEEEeeCCCEEE-EecCCCcEEEEeCCC-Cee--EEeecccCcEEEEEEcc-CCCEEEEeeCC-CcEEEE
Q 042260 73 SYDQHTNNVMAVGFQCDGNWMY-SGSEDGTVKIWDLRA-PVC--QMEYESRAAVNTVVLHP-NQTELISGDQN-GNIRVW 146 (174)
Q Consensus 73 ~~~~~~~~v~~~~~~~~~~~l~-t~~~dg~v~iwd~~~-~~~--~~~~~~~~~v~~~~~~~-~~~~l~s~~~d-~~i~iw 146 (174)
...........++|+|+++.++ +-+..+.|..||+.. ... ...+........+++.+ +|+..+++..+ +.|..|
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~ 294 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFY 294 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSC
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEE
Confidence 1222345678999999997655 455678999999863 221 22333355678889998 58877766544 234444
Q ss_pred eCC
Q 042260 147 DLT 149 (174)
Q Consensus 147 d~~ 149 (174)
|..
T Consensus 295 ~P~ 297 (355)
T 3sre_A 295 DAE 297 (355)
T ss_dssp CTT
T ss_pred CCC
Confidence 443
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=70.41 E-value=43 Score=27.44 Aligned_cols=127 Identities=9% Similarity=0.150 Sum_probs=63.3
Q ss_pred cEEEEECCCCceeEEeecC----CCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCC
Q 042260 16 TIKFWEAKSGRCYRTIQYP----DSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGN 91 (174)
Q Consensus 16 ~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 91 (174)
-+..+|.++++... +... ...+.++....++.+.+++. +.+..++..+..........-....+.++.. .+|+
T Consensus 494 Gl~~~d~~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~-~~g~ 570 (758)
T 3ott_A 494 GIDKINPRTREVTK-LFADELTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTC-VKNS 570 (758)
T ss_dssp SEEEEETTTTEEEE-ECTTTSCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEE-ETTE
T ss_pred CcEEEeCCCCceEE-ecCCCcCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEE-CCCC
Confidence 36777877654332 2211 23467777777888877664 4688888765543322100111245666665 3555
Q ss_pred EEEEecCCCcEEEEeCCCCeeEEeec-ccCcEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 042260 92 WMYSGSEDGTVKIWDLRAPVCQMEYE-SRAAVNTVVLHPNQTELISGDQNGNIRVWDLT 149 (174)
Q Consensus 92 ~l~t~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (174)
|..++..| +..+|..+..... +. ....+....+......|..|+.+| +..++.+
T Consensus 571 -lWi~t~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~l~fG~~~G-l~~f~p~ 625 (758)
T 3ott_A 571 -IWVSTTNG-LWIIDRKTMDARQ-QNMTNKRFTSLLFDPKEDCVYLGGADG-FGISHSN 625 (758)
T ss_dssp -EEEEESSC-EEEEETTTCCEEE-C--CCCCCSEEEEETTTTEEEEECBSE-EEEEEC-
T ss_pred -EEEECCCC-eEEEcCCCceeEE-ecCCCCceeeeEEECCCCcEEEecCCc-eEEEChh
Confidence 44444555 6667877654332 11 112223334433334466666666 4444443
No 346
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=70.37 E-value=43 Score=27.44 Aligned_cols=137 Identities=9% Similarity=0.041 Sum_probs=74.2
Q ss_pred EeeCCCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEe--ecCCCCEEEEEEe
Q 042260 10 TASYDKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSY--DQHTNNVMAVGFQ 87 (174)
Q Consensus 10 s~s~D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~ 87 (174)
.|..+| +..||..+++...........|..+.. .++.+.++..+ .+..+|..+.+....... ......+.++...
T Consensus 78 igT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 154 (758)
T 3ott_A 78 MGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRT 154 (758)
T ss_dssp EEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEEC
T ss_pred EEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEc
Confidence 334444 678887765432211111234666644 35666665544 788888765432211000 0123457777777
Q ss_pred eCCCEEEEecCCCcEEEEeCCCCeeEEee-cc-----cCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 042260 88 CDGNWMYSGSEDGTVKIWDLRAPVCQMEY-ES-----RAAVNTVVLHPNQTELISGDQNGNIRVWDLTANS 152 (174)
Q Consensus 88 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-~~-----~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (174)
++++..+. ..+ -+..+|.......... .. ...|.++....++..|-.|+. +.+..+|..+++
T Consensus 155 ~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 155 KDNQIYVG-TYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp TTCCEEEE-ETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CCCCEEEE-eCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 67776553 344 4777887665432211 11 124788887776666555654 458888887654
No 347
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=69.98 E-value=5.6 Score=33.07 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=24.7
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEeec
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQY 33 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~ 33 (174)
.++++-+.|.++|+|++++++++.+...
T Consensus 232 ~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 232 RYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3788999999999999999998877765
No 348
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=67.66 E-value=48 Score=26.84 Aligned_cols=142 Identities=8% Similarity=0.012 Sum_probs=74.5
Q ss_pred EEEEEeeCCCcEEEEECCCCceeEEee-cCCCCeEEEEEcCC-CceEEEec--CCcEEEEEcCCCCCCCeEEeecCCCCE
Q 042260 6 VILATASYDKTIKFWEAKSGRCYRTIQ-YPDSQVNRLEITPN-KHYLAAAG--NPHIRLFDVNSSSPQPVMSYDQHTNNV 81 (174)
Q Consensus 6 ~~l~s~s~D~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v 81 (174)
.+..+-+..+.|.+.++.... ...+. ..-....+++++|. +.++.+-. ...|...++.... ............
T Consensus 405 ~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~--~~~l~~~~l~~P 481 (619)
T 3s94_A 405 NLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD--RVVLVNTSLGWP 481 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEECSSCSCE
T ss_pred cEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc--cEEEEeCCCCCC
Confidence 344555555666666665432 22222 22345678999986 55544432 2345555554322 222223334567
Q ss_pred EEEEEeeCC-CEEEEecCCCcEEEEeCCCCeeEEee-cccCcEEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 042260 82 MAVGFQCDG-NWMYSGSEDGTVKIWDLRAPVCQMEY-ESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTAN 151 (174)
Q Consensus 82 ~~~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (174)
..+++++.+ +..++-+..+.|...++......... ..-.....+++.. +....+-...+.|..-|..++
T Consensus 482 ~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 482 NGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLG-DYVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEET-TEEEEECTTSSCEEEEESSSC
T ss_pred eeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEEC-CEEEEeecCCCeEEEEEcCCC
Confidence 889998754 44555566678888888643322111 1111223455543 233344445667877787776
No 349
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=63.36 E-value=42 Score=24.72 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=81.4
Q ss_pred CCCCcEEEEEeeCCCcEEEEECCC----CceeEEeecCCCCeEEEEEcCCCceEEEecCCcE---EEEEcCCCCCCC---
Q 042260 1 MAQPSVILATASYDKTIKFWEAKS----GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHI---RLFDVNSSSPQP--- 70 (174)
Q Consensus 1 ~~~~~~~l~s~s~D~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i---~i~d~~~~~~~~--- 70 (174)
|+.+..++++.+.+|-||--.+.. +.....++..+.-+.....+....++..+..|.+ +.++++..+...
T Consensus 1 lI~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 1 MVASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp CCSCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred CccCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 456778899999999999776432 1111223333332333334444455555555543 344454332111
Q ss_pred ----eEEeecCCCCEEEEEEee---CCCEEEEecCCCcEEEEeCCC--------CeeEEeecccCcEEEEEEccCCCEEE
Q 042260 71 ----VMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRA--------PVCQMEYESRAAVNTVVLHPNQTELI 135 (174)
Q Consensus 71 ----~~~~~~~~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~ 135 (174)
...+. ....+.++...+ ++.+++..+.+|.++--.+.. +.....+.....+..+........|+
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEE
Confidence 11111 234456554333 256789999999999887632 12222233345555544444555677
Q ss_pred EeeCCCcEEEEeCCC
Q 042260 136 SGDQNGNIRVWDLTA 150 (174)
Q Consensus 136 s~~~d~~i~iwd~~~ 150 (174)
..+.+|.+..++...
T Consensus 160 l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 160 LVTHNGYALWFDESE 174 (323)
T ss_dssp EEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHH
Confidence 788888887777653
No 350
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=59.79 E-value=50 Score=24.39 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=77.9
Q ss_pred CcEEEEEeeCCCcEEEEECCC-------CceeEEeecC-CCCeEEE-EEcCCCceEEEecCCc---EEEEEcCCCCCC--
Q 042260 4 PSVILATASYDKTIKFWEAKS-------GRCYRTIQYP-DSQVNRL-EITPNKHYLAAAGNPH---IRLFDVNSSSPQ-- 69 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~-------~~~~~~~~~~-~~~v~~~-~~~~~~~~~~~~~d~~---i~i~d~~~~~~~-- 69 (174)
+..++++-+.+|-||=-.+.+ |..+...... +..+..+ ..+....+++-...|. ++.++++.....
T Consensus 2 ~E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 2 AEDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CCEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred CccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 567889999999999765321 1222222211 2233333 3333344444444443 344555543211
Q ss_pred --C---eEEeecCCCCEEEEEEee---CCCEEEEecCCCcEEEEeCCCC-------eeEEeecccCcEEEEEEccCCCEE
Q 042260 70 --P---VMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAP-------VCQMEYESRAAVNTVVLHPNQTEL 134 (174)
Q Consensus 70 --~---~~~~~~~~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l 134 (174)
+ ...+. ....+..+...+ +..++++.+.+|.++--.+... .....+.....+..+........|
T Consensus 82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 82 GQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDL 160 (327)
T ss_dssp CEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEE
T ss_pred CEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEE
Confidence 1 01111 235566655433 4678999999999998875431 111223334555555555555678
Q ss_pred EEeeCCCcEEEEeCC
Q 042260 135 ISGDQNGNIRVWDLT 149 (174)
Q Consensus 135 ~s~~~d~~i~iwd~~ 149 (174)
+..+.+|.+..+...
T Consensus 161 ll~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 161 LLVSANGQSIRFSAT 175 (327)
T ss_dssp EEEETTSEEEEEECC
T ss_pred EEEECCCeEEEEECc
Confidence 888888988777776
No 351
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=57.33 E-value=60 Score=24.50 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=79.7
Q ss_pred CCCCcEEEEEeeCCCcEEEEECC-------CCceeEEeec-CCCCeEEE-EEcCCCceEEEecCCcE---EEEEcCCCCC
Q 042260 1 MAQPSVILATASYDKTIKFWEAK-------SGRCYRTIQY-PDSQVNRL-EITPNKHYLAAAGNPHI---RLFDVNSSSP 68 (174)
Q Consensus 1 ~~~~~~~l~s~s~D~~v~vwd~~-------~~~~~~~~~~-~~~~v~~~-~~~~~~~~~~~~~d~~i---~i~d~~~~~~ 68 (174)
++.+..++++.+.+|.||=-.+. .|+.+..+.. .+..+..+ ..+....++..+..|.+ +.++++....
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 34567789999999999976532 1222333322 22344443 33333445544545543 3445543321
Q ss_pred CC-------eEEeecCCCCEEEEEEee---CCCEEEEecCCCcEEEEeCCC-------CeeEEeecccCcEEEEEEccCC
Q 042260 69 QP-------VMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRA-------PVCQMEYESRAAVNTVVLHPNQ 131 (174)
Q Consensus 69 ~~-------~~~~~~~~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~~-------~~~~~~~~~~~~v~~~~~~~~~ 131 (174)
.. ...+. ....|.++.... .+.+++..+..|.++-..+.. ......+.....+..+......
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 10 11122 235566655432 456899999999999887532 1112223333444444444445
Q ss_pred CEEEEeeCCCcEEEEeCCC
Q 042260 132 TELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 132 ~~l~s~~~d~~i~iwd~~~ 150 (174)
..|+..+.+|.+..++...
T Consensus 162 ~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp CEEEEEETTSEEEEEEGGG
T ss_pred ceEEEEeCCCeEEEEEccc
Confidence 5677778888877776553
No 352
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=57.21 E-value=65 Score=24.89 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=49.8
Q ss_pred CCcEEEEEeeCCCcEEEEECCCCcee--EEeec------CCCCeEEEEEcCC----CceEEEe-c------------CCc
Q 042260 3 QPSVILATASYDKTIKFWEAKSGRCY--RTIQY------PDSQVNRLEITPN----KHYLAAA-G------------NPH 57 (174)
Q Consensus 3 ~~~~~l~s~s~D~~v~vwd~~~~~~~--~~~~~------~~~~v~~~~~~~~----~~~~~~~-~------------d~~ 57 (174)
.++.++++-...+.|++++..+++.. ..+.. .......++++|+ +.+.++. . ...
T Consensus 36 pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~ 115 (454)
T 1cru_A 36 PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTI 115 (454)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccE
Confidence 35666666554457888876555432 22211 1345679999984 4443332 1 123
Q ss_pred EEEEEcCCCCC-----CCeEE-eec-CCCCEEEEEEeeCCCEEEEecC
Q 042260 58 IRLFDVNSSSP-----QPVMS-YDQ-HTNNVMAVGFQCDGNWMYSGSE 98 (174)
Q Consensus 58 i~i~d~~~~~~-----~~~~~-~~~-~~~~v~~~~~~~~~~~l~t~~~ 98 (174)
|.-+++..... ..+.. +.. .......++|.++|++.++.+.
T Consensus 116 v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 116 IRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 44454432211 11111 111 1224788999999998777543
No 353
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=55.77 E-value=64 Score=24.39 Aligned_cols=130 Identities=10% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEE
Q 042260 14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWM 93 (174)
Q Consensus 14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 93 (174)
+.+|.+-|+.+++.+..-.. ...+.-.+|..+.++--....+.++++++.+ .+..+. ....|.-=.|-. .+.|
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALrag~~LQiFnletK~--klks~~-~~e~VvfWkWis-~~~L 120 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKAGKTLQIFNIEMKS--KMKAHT-MTDDVTFWKWIS-LNTV 120 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEETTEEEEEETTTTE--EEEEEE-CSSCEEEEEECS-SSEE
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEecCCeEEEechHHhh--hhccee-cCCccEEEEecC-CCeE
Confidence 34677778777655422211 1223456898887765557789999998762 233322 234555555543 3344
Q ss_pred EEecCCCcEEEEeCCC-CeeEEeecc-----cCcEEEEEEccCCCEEE-Eee------CCCcEEEEeCCCC
Q 042260 94 YSGSEDGTVKIWDLRA-PVCQMEYES-----RAAVNTVVLHPNQTELI-SGD------QNGNIRVWDLTAN 151 (174)
Q Consensus 94 ~t~~~dg~v~iwd~~~-~~~~~~~~~-----~~~v~~~~~~~~~~~l~-s~~------~d~~i~iwd~~~~ 151 (174)
+--+. ..|.-|++.. ..+++-++. ...|-....+++.+-++ .|- -.|.+.+|.++.+
T Consensus 121 ~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 190 (365)
T 2xzh_A 121 ALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 190 (365)
T ss_dssp EEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred EEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc
Confidence 44333 3799999864 233333432 35678888888887544 332 1356889988875
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=53.68 E-value=66 Score=23.87 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=27.2
Q ss_pred EEEEeeCCCcEEEEECC-CCceeEEe--ecCCCCeEEEEEcC--CCceEEEecCC
Q 042260 7 ILATASYDKTIKFWEAK-SGRCYRTI--QYPDSQVNRLEITP--NKHYLAAAGNP 56 (174)
Q Consensus 7 ~l~s~s~D~~v~vwd~~-~~~~~~~~--~~~~~~v~~~~~~~--~~~~~~~~~d~ 56 (174)
.|..|...| +.+++.. .++..... ......|.++.+.| .+.+.+++..+
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 455666666 5555533 23333322 23345689999998 56666665444
No 355
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=48.25 E-value=73 Score=22.80 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=78.5
Q ss_pred cEEEEEeeCCCcEEEEECCCC------ceeEEeecCCCCeEEEEE-cCCCceEEEecCCcEEEEEc---CCCCC--CCe-
Q 042260 5 SVILATASYDKTIKFWEAKSG------RCYRTIQYPDSQVNRLEI-TPNKHYLAAAGNPHIRLFDV---NSSSP--QPV- 71 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~~------~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~d~~i~i~d~---~~~~~--~~~- 71 (174)
...++..+.+|.++-..+..- .....++.. ..+..+.. +....++..+..+.+..+.. +.... ...
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~ 158 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ 158 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred CCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE
Confidence 346788999999999876442 112223322 34444433 33445666666777655554 22110 111
Q ss_pred -EEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC-------eeEEeecccCcEEEEEEccCCCEEEEeeCCCcE
Q 042260 72 -MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-------VCQMEYESRAAVNTVVLHPNQTELISGDQNGNI 143 (174)
Q Consensus 72 -~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i 143 (174)
..+. ....+..+...+++..++..+..|.++...+..- +-...+.....+..+.....+..++..+.+|.+
T Consensus 159 ~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ 237 (276)
T 3no0_A 159 GIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKA 237 (276)
T ss_dssp CCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCE
T ss_pred EEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeE
Confidence 1122 2355666665556678888899999988875321 112222333444444333334457777778887
Q ss_pred EE--EeCCC
Q 042260 144 RV--WDLTA 150 (174)
Q Consensus 144 ~i--wd~~~ 150 (174)
.. ++...
T Consensus 238 ir~~~~~~~ 246 (276)
T 3no0_A 238 FYDKINQKD 246 (276)
T ss_dssp EEEEEEGGG
T ss_pred EEeeeCHHH
Confidence 77 76654
No 356
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.60 E-value=1.2e+02 Score=24.07 Aligned_cols=130 Identities=10% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCcEEEEECCCCceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEE
Q 042260 14 DKTIKFWEAKSGRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWM 93 (174)
Q Consensus 14 D~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 93 (174)
+.+|.|-|+.+++.+..-.. ...+.-.+|..+.++--....+.++|+++.+ .+..+.. ...|.-=.|-.. +.|
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALrag~~lQiFnle~K~--klks~~~-~e~VvfWkWis~-~~l 119 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKAGKTLQIFNIEMKS--KMKAHTM-TDDVTFWKWISL-NTV 119 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEETTEEEEEETTTTE--EEEEEEC-SSCCCEEEEEET-TEE
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEecCCeEEEEchHHhh--hhcceec-CCCceEEEecCC-CeE
Confidence 34677777776654422211 1234557888887775557789999998752 2333322 344544455443 344
Q ss_pred EEecCCCcEEEEeCCC-CeeEEeecc-----cCcEEEEEEccCCCEEE-Eee------CCCcEEEEeCCCC
Q 042260 94 YSGSEDGTVKIWDLRA-PVCQMEYES-----RAAVNTVVLHPNQTELI-SGD------QNGNIRVWDLTAN 151 (174)
Q Consensus 94 ~t~~~dg~v~iwd~~~-~~~~~~~~~-----~~~v~~~~~~~~~~~l~-s~~------~d~~i~iwd~~~~ 151 (174)
+-.+. ..|.-|++.. ..+++.|+. ...|-....+++.+-++ +|- -.|.+.+|.++.+
T Consensus 120 ~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 120 ALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp EEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred EEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc
Confidence 44433 4799999964 233333432 35678888888888654 331 2356889988874
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=38.92 E-value=1.1e+02 Score=22.24 Aligned_cols=148 Identities=10% Similarity=0.170 Sum_probs=79.7
Q ss_pred CCCcEEEEEeeCCCcEEEEECCCCc-------eeEEe--ecCCCCeEEEEEcCCCceEEEecCCcEEEEE---cCCCCCC
Q 042260 2 AQPSVILATASYDKTIKFWEAKSGR-------CYRTI--QYPDSQVNRLEITPNKHYLAAAGNPHIRLFD---VNSSSPQ 69 (174)
Q Consensus 2 ~~~~~~l~s~s~D~~v~vwd~~~~~-------~~~~~--~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d---~~~~~~~ 69 (174)
+.+..++++.+.+|.||--.+..-+ .+..+ +..+.-+.....+....++..+..|.++-+. ++.....
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4467789999999999988654321 22222 2233323333344445555556666554333 3322111
Q ss_pred C-------eEEeecCCCCEEEEEEee---CCCEEEEecCCCcEEEEeCCCC-------eeEEeecccCcEEEEEEccCCC
Q 042260 70 P-------VMSYDQHTNNVMAVGFQC---DGNWMYSGSEDGTVKIWDLRAP-------VCQMEYESRAAVNTVVLHPNQT 132 (174)
Q Consensus 70 ~-------~~~~~~~~~~v~~~~~~~---~~~~l~t~~~dg~v~iwd~~~~-------~~~~~~~~~~~v~~~~~~~~~~ 132 (174)
. ...+. ....+..+...+ ...+++..+..|.++--.+... .....+.....+..+.....+.
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 0 11122 224455554332 4667888899999998876321 1222233345555555544456
Q ss_pred EEEEeeCCCcEEEEeCCC
Q 042260 133 ELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 133 ~l~s~~~d~~i~iwd~~~ 150 (174)
.++..+.+|.+..++...
T Consensus 164 ~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp EEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHH
Confidence 788888999988887764
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=29.44 E-value=2.3e+02 Score=23.04 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=38.9
Q ss_pred CCEEEEEEeeCCCEEE-EecC-----------CCcEEEEeCCCCeeEEeec--ccCcEEEEEEccCCCEEEEe
Q 042260 79 NNVMAVGFQCDGNWMY-SGSE-----------DGTVKIWDLRAPVCQMEYE--SRAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 79 ~~v~~~~~~~~~~~l~-t~~~-----------dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~ 137 (174)
...-.+.|.++|.+.+ |-.. ...|...+..+.+....+. ....++.++|+|+++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4466788999998777 4221 1256666665555443332 23568999999999988765
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=27.55 E-value=2e+02 Score=21.77 Aligned_cols=135 Identities=7% Similarity=0.188 Sum_probs=76.3
Q ss_pred CcEEEEECCCC--ceeEEeecC------CCCeEEEEEc---CC----CceEEEe--cCCcEEEEEcCCCCCCCeE-----
Q 042260 15 KTIKFWEAKSG--RCYRTIQYP------DSQVNRLEIT---PN----KHYLAAA--GNPHIRLFDVNSSSPQPVM----- 72 (174)
Q Consensus 15 ~~v~vwd~~~~--~~~~~~~~~------~~~v~~~~~~---~~----~~~~~~~--~d~~i~i~d~~~~~~~~~~----- 72 (174)
..|.+||++++ +.++.+..+ .+....+.+. +. +.++..+ +...|-++|+.+++.-.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 46889999999 888888754 3346777776 22 3343333 4567999999776422111
Q ss_pred -----Ee--ecC----CCCEEEEEEeeC----CCEEEEecCCCcEEEEeCC-----CC---eeEEeeccc---CcEEEEE
Q 042260 73 -----SY--DQH----TNNVMAVGFQCD----GNWMYSGSEDGTVKIWDLR-----AP---VCQMEYESR---AAVNTVV 126 (174)
Q Consensus 73 -----~~--~~~----~~~v~~~~~~~~----~~~l~t~~~dg~v~iwd~~-----~~---~~~~~~~~~---~~v~~~~ 126 (174)
.+ .+. ...+..++.+++ ++.++-..-.+ -++|.+. .. .....+..+ ......+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 00 010 246777788776 55555443332 1222221 11 111122222 2334556
Q ss_pred Ec-cCCCEEEEeeCCCcEEEEeCCC
Q 042260 127 LH-PNQTELISGDQNGNIRVWDLTA 150 (174)
Q Consensus 127 ~~-~~~~~l~s~~~d~~i~iwd~~~ 150 (174)
+. .+|..+++--+...|..||...
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 75 5677677777788899999876
No 360
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=27.24 E-value=2.3e+02 Score=22.31 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=41.0
Q ss_pred CEEEEEEeeC----CC--EEEEecCCCcEEEEeCC-CC-------eeEEee---cccCcEEEEEEccCCCEEEEeeCCCc
Q 042260 80 NVMAVGFQCD----GN--WMYSGSEDGTVKIWDLR-AP-------VCQMEY---ESRAAVNTVVLHPNQTELISGDQNGN 142 (174)
Q Consensus 80 ~v~~~~~~~~----~~--~l~t~~~dg~v~iwd~~-~~-------~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~ 142 (174)
..++++...- +. .+..|..+|.|+-.-+. .. .....+ ....+|..+.++++...|..++.++-
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4677665532 33 46778888876543332 21 111122 24578999999999999999988875
Q ss_pred EEE
Q 042260 143 IRV 145 (174)
Q Consensus 143 i~i 145 (174)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=26.91 E-value=1.9e+02 Score=21.24 Aligned_cols=145 Identities=13% Similarity=0.184 Sum_probs=78.2
Q ss_pred cEEEEEeeCCCcEEEEECCC-------CceeEEeecCCCCeEEEEEcCCCceEEEecCCcEEEEEcC-----CCCC--CC
Q 042260 5 SVILATASYDKTIKFWEAKS-------GRCYRTIQYPDSQVNRLEITPNKHYLAAAGNPHIRLFDVN-----SSSP--QP 70 (174)
Q Consensus 5 ~~~l~s~s~D~~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~-----~~~~--~~ 70 (174)
...++..+.+|-+|--.+.. |.....++..+.-+.....+....+++.+..+.+..+... .... ..
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G 188 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG 188 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC
Confidence 45788899999999887543 2112223333332333344444556666667766555544 1111 11
Q ss_pred e--EEeecCCCCEEEEEEeeCCCEEEEecCCCcEEEEeCCCC-------eeEE--eecc-cCcEEEEEEccCCCEEEEee
Q 042260 71 V--MSYDQHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAP-------VCQM--EYES-RAAVNTVVLHPNQTELISGD 138 (174)
Q Consensus 71 ~--~~~~~~~~~v~~~~~~~~~~~l~t~~~dg~v~iwd~~~~-------~~~~--~~~~-~~~v~~~~~~~~~~~l~s~~ 138 (174)
. ..+. ....+.++...+.+..++..+..|.++.-.+... .-.. .+.. ...+..+........++..+
T Consensus 189 v~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T 267 (327)
T 3uc1_A 189 VQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVT 267 (327)
T ss_dssp EESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEE
T ss_pred eeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEc
Confidence 1 1121 2355777766666778899999999988775321 1111 1211 23344444333445566667
Q ss_pred CCCcEEEEeCCC
Q 042260 139 QNGNIRVWDLTA 150 (174)
Q Consensus 139 ~d~~i~iwd~~~ 150 (174)
.+|.+.-++...
T Consensus 268 ~~G~~ir~~~~~ 279 (327)
T 3uc1_A 268 SGGGVIRTAARQ 279 (327)
T ss_dssp GGGCEEEEEGGG
T ss_pred CCCeEEEEehhh
Confidence 777766666553
No 362
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=26.65 E-value=17 Score=28.34 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=13.0
Q ss_pred EeeCCCcEEEEeCCCCcce
Q 042260 136 SGDQNGNIRVWDLTANSCS 154 (174)
Q Consensus 136 s~~~d~~i~iwd~~~~~~~ 154 (174)
.+..+|.||+||+++.+..
T Consensus 162 ~~~~~GVVrvWDVkd~slL 180 (577)
T 3mwp_A 162 RAGRDGVVRVWDVKNAELL 180 (577)
T ss_dssp ----CCEECSEECSCGGGG
T ss_pred CCCCCCeEEEEecCCHHHH
Confidence 4567899999999987654
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=26.64 E-value=1.8e+02 Score=20.99 Aligned_cols=146 Identities=13% Similarity=0.148 Sum_probs=75.3
Q ss_pred CcEEEEEeeCCCcEEEEECCCCc-------eeE--EeecCCCCeEEEEEcCCCceEEEecCCcE---EEEEcCCCCCC--
Q 042260 4 PSVILATASYDKTIKFWEAKSGR-------CYR--TIQYPDSQVNRLEITPNKHYLAAAGNPHI---RLFDVNSSSPQ-- 69 (174)
Q Consensus 4 ~~~~l~s~s~D~~v~vwd~~~~~-------~~~--~~~~~~~~v~~~~~~~~~~~~~~~~d~~i---~i~d~~~~~~~-- 69 (174)
+..++++.+.+|-||=-.+..-+ .+. .++..+.-+.....+....+++.+..|.+ +.++++.....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 45678899999999877654311 111 12333332333333444455555555553 34445443221
Q ss_pred Ce-----EEeecCCCCEEEEEEe---eCCCEEEEecCCCcEEEEeCCC-------CeeEEeecccCcEEEEEEccCCCEE
Q 042260 70 PV-----MSYDQHTNNVMAVGFQ---CDGNWMYSGSEDGTVKIWDLRA-------PVCQMEYESRAAVNTVVLHPNQTEL 134 (174)
Q Consensus 70 ~~-----~~~~~~~~~v~~~~~~---~~~~~l~t~~~dg~v~iwd~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l 134 (174)
.. ..+. ....+.++... .++.+++..+..|.++--.+.. ......+..+..+..+....+...|
T Consensus 82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 82 GRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEV 160 (307)
T ss_dssp CEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEE
T ss_pred CeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEE
Confidence 11 1121 23456655432 3456788999999999887531 1111222333555554444445567
Q ss_pred EEeeCCCcEEEEeCCC
Q 042260 135 ISGDQNGNIRVWDLTA 150 (174)
Q Consensus 135 ~s~~~d~~i~iwd~~~ 150 (174)
+..+.+|.+..++...
T Consensus 161 ~l~T~~G~~irf~~~~ 176 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESS 176 (307)
T ss_dssp EEEETTSEEEEEEGGG
T ss_pred EEECCCCcEEEEEHHH
Confidence 7778888877766653
No 364
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=26.24 E-value=2e+02 Score=23.23 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=33.7
Q ss_pred EEEEEcCCCceEEEecC-------------CcEEEEEcCCCCCCCeEEeecCCCCEEEEEEeeCCCEEEEe
Q 042260 39 NRLEITPNKHYLAAAGN-------------PHIRLFDVNSSSPQPVMSYDQHTNNVMAVGFQCDGNWMYSG 96 (174)
Q Consensus 39 ~~~~~~~~~~~~~~~~d-------------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~ 96 (174)
-.|.|++.+.++++-.. ..+...+..+++..++..- ....+++.++|+|+++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEE
Confidence 45889998886665321 1233444444444333332 235789999999998865543
No 365
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=25.94 E-value=2.8e+02 Score=22.81 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=35.0
Q ss_pred EEEEecCCCcEEEE-eCCCCeeE-E---eecccCcEEEEEEccCC--CEEEEeeCCCcEEE
Q 042260 92 WMYSGSEDGTVKIW-DLRAPVCQ-M---EYESRAAVNTVVLHPNQ--TELISGDQNGNIRV 145 (174)
Q Consensus 92 ~l~t~~~dg~v~iw-d~~~~~~~-~---~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~i 145 (174)
.++.|..+|.|+-. ........ . .+....+|..+.++++. ..|..++.++-+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 57778888876433 33332222 1 22345788999999887 88888887765544
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=25.75 E-value=2.7e+02 Score=22.64 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=34.8
Q ss_pred eEEEEEcCCCceEEEecC-------------CcEEEEEcCCCCCCCeEEeec-CCCCEEEEEEeeCCCEEEEe
Q 042260 38 VNRLEITPNKHYLAAAGN-------------PHIRLFDVNSSSPQPVMSYDQ-HTNNVMAVGFQCDGNWMYSG 96 (174)
Q Consensus 38 v~~~~~~~~~~~~~~~~d-------------~~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~t~ 96 (174)
...+.|.+.+.+.++... ..+..++..+++...+. .. ....+..++|+|+++.|+..
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl--~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFM--VGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEE--ECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEE--eCCCCccccCCEECCCCCEEEEE
Confidence 457889998887663321 13444454445433332 22 23578999999999876554
No 367
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=25.26 E-value=2.4e+02 Score=21.86 Aligned_cols=103 Identities=9% Similarity=0.127 Sum_probs=58.0
Q ss_pred CeEEEEEcCCCc--eEEEecCCcEEEEEcCCCC-CCCeEEee---------cCCCCEEEEEEeeC----CCEEEEecC--
Q 042260 37 QVNRLEITPNKH--YLAAAGNPHIRLFDVNSSS-PQPVMSYD---------QHTNNVMAVGFQCD----GNWMYSGSE-- 98 (174)
Q Consensus 37 ~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~-~~~~~~~~---------~~~~~v~~~~~~~~----~~~l~t~~~-- 98 (174)
.-+.|+|.|++. ++++-..+.|++++..... ...+.... ........+++.|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999885 7887778888888653221 11222211 11356889999885 444444322
Q ss_pred CC----------cEEEEeCCC----------CeeEEeec---ccCcEEEEEEccCCCEEEEeeC
Q 042260 99 DG----------TVKIWDLRA----------PVCQMEYE---SRAAVNTVVLHPNQTELISGDQ 139 (174)
Q Consensus 99 dg----------~v~iwd~~~----------~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~ 139 (174)
++ .|.-|.+.. .+.+..+. .......|+|.|++.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 11 233244321 22333322 1345789999999987666443
No 368
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=24.15 E-value=1.2e+02 Score=19.75 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=19.4
Q ss_pred CCcEEEEECCCCceeEEeecCCCCe
Q 042260 14 DKTIKFWEAKSGRCYRTIQYPDSQV 38 (174)
Q Consensus 14 D~~v~vwd~~~~~~~~~~~~~~~~v 38 (174)
+++|++.|..+...+..+....-.+
T Consensus 63 ~~tlrLvD~~tk~~L~~~pI~~I~f 87 (148)
T 3d8d_A 63 DETLKLVEPQSQALLHAQPIISIRV 87 (148)
T ss_dssp TTEEEEECTTTCCEEEEEEGGGCCE
T ss_pred CCeEEEecCCCCceEEEeeEEEEEE
Confidence 6789999999988888887654333
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=23.31 E-value=3e+02 Score=22.29 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=37.3
Q ss_pred CEEEEEEeeCCCEEEEecCC------------CcEEEEeCCCCeeEEee--cccCcEEEEEEccCCCEEEEe
Q 042260 80 NVMAVGFQCDGNWMYSGSED------------GTVKIWDLRAPVCQMEY--ESRAAVNTVVLHPNQTELISG 137 (174)
Q Consensus 80 ~v~~~~~~~~~~~l~t~~~d------------g~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~ 137 (174)
..-.+.|++.|++++....+ ..+.+.+..+.+...-+ .....+..++|+|+++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45678899999977765432 23444555544433222 235678999999999887764
No 370
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.53 E-value=3.1e+02 Score=21.82 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=40.6
Q ss_pred CEEEEEEeeCC--CEEEEecCCCcEEEEeCCCC----eeEEee---cccCcEE-EEEEccCCCEEEEeeCCCcEEE
Q 042260 80 NVMAVGFQCDG--NWMYSGSEDGTVKIWDLRAP----VCQMEY---ESRAAVN-TVVLHPNQTELISGDQNGNIRV 145 (174)
Q Consensus 80 ~v~~~~~~~~~--~~l~t~~~dg~v~iwd~~~~----~~~~~~---~~~~~v~-~~~~~~~~~~l~s~~~d~~i~i 145 (174)
..++++....+ ..++.|..+|.|+-..+... .....+ ....+|. .+.++++...|..++.++-+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 45666654433 35777888888765544321 111111 2256785 8999999999998887765544
No 371
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=20.52 E-value=2.4e+02 Score=20.21 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=34.5
Q ss_pred EEeeCCCEEEEecC-CCcEEEEeCCCCeeEEeecccCcEEEEEEccCCCEEEEeeCC--CcEEEEeCCC
Q 042260 85 GFQCDGNWMYSGSE-DGTVKIWDLRAPVCQMEYESRAAVNTVVLHPNQTELISGDQN--GNIRVWDLTA 150 (174)
Q Consensus 85 ~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--~~i~iwd~~~ 150 (174)
.++++++.|+-.+. ...|..-++........+.. ... ..+.|++..|+-...+ ..|..-++..
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 45677777775554 56788777766543333322 222 2355777776643322 2455555553
Done!