Query 042263
Match_columns 159
No_of_seqs 149 out of 720
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:26:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hcs_A TNF receptor-associated 99.8 5.1E-20 1.7E-24 140.2 4.7 105 14-121 14-138 (170)
2 3hct_A TNF receptor-associated 99.6 4.9E-16 1.7E-20 111.9 2.4 88 15-119 15-110 (118)
3 3knv_A TNF receptor-associated 99.5 1.4E-15 4.8E-20 113.4 0.2 82 16-114 29-128 (141)
4 1rmd_A RAG1; V(D)J recombinati 99.5 7.3E-15 2.5E-19 105.1 3.0 82 17-115 22-112 (116)
5 2a25_A Ubiquitin ligase SIAH1; 99.4 6.1E-13 2.1E-17 103.9 7.2 80 73-155 18-104 (193)
6 3lrq_A E3 ubiquitin-protein li 99.1 9.4E-12 3.2E-16 87.0 0.7 68 17-84 21-98 (100)
7 1t1h_A Gspef-atpub14, armadill 99.1 1.5E-11 5.1E-16 81.7 0.9 56 16-72 6-69 (78)
8 1jm7_B BARD1, BRCA1-associated 99.1 6.7E-11 2.3E-15 84.7 3.6 57 16-72 20-81 (117)
9 3ztg_A E3 ubiquitin-protein li 99.1 4.4E-11 1.5E-15 81.7 2.2 56 16-72 11-77 (92)
10 2egp_A Tripartite motif-contai 99.0 8.5E-12 2.9E-16 82.7 -2.0 54 15-69 9-76 (79)
11 2y43_A E3 ubiquitin-protein li 99.0 5.7E-11 2E-15 82.4 1.3 56 17-72 21-83 (99)
12 1bor_A Transcription factor PM 99.0 1.5E-10 5.2E-15 72.8 3.1 45 15-60 3-47 (56)
13 2kre_A Ubiquitin conjugation f 99.0 1.1E-10 3.8E-15 82.1 2.6 58 16-74 27-91 (100)
14 4ayc_A E3 ubiquitin-protein li 99.0 9.1E-11 3.1E-15 86.3 2.2 55 17-72 52-111 (138)
15 3fl2_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 84.0 2.0 60 16-76 50-118 (124)
16 2ysl_A Tripartite motif-contai 99.0 1.8E-10 6.3E-15 75.2 2.6 45 15-60 17-67 (73)
17 2kr4_A Ubiquitin conjugation f 99.0 1.5E-10 5.1E-15 78.9 2.2 56 16-72 12-74 (85)
18 1wgm_A Ubiquitin conjugation f 98.9 2.6E-10 8.8E-15 79.9 2.7 56 16-72 20-83 (98)
19 2ckl_A Polycomb group ring fin 98.9 1.9E-10 6.6E-15 81.0 1.7 60 16-75 13-83 (108)
20 2csy_A Zinc finger protein 183 98.9 2E-10 6.8E-15 76.9 1.7 56 13-69 10-71 (81)
21 2ecv_A Tripartite motif-contai 98.9 6.2E-11 2.1E-15 79.1 -1.1 45 15-60 16-69 (85)
22 3l11_A E3 ubiquitin-protein li 98.9 3.3E-10 1.1E-14 80.6 2.4 45 15-60 12-60 (115)
23 2ecw_A Tripartite motif-contai 98.9 5E-11 1.7E-15 79.6 -1.9 54 16-70 17-83 (85)
24 2djb_A Polycomb group ring fin 98.9 2.2E-10 7.6E-15 75.1 1.1 46 15-60 12-60 (72)
25 2ckl_B Ubiquitin ligase protei 98.9 4.2E-10 1.4E-14 84.9 2.0 58 17-74 53-119 (165)
26 1e4u_A Transcriptional repress 98.9 4.7E-10 1.6E-14 75.5 1.7 46 15-60 8-60 (78)
27 2d8t_A Dactylidin, ring finger 98.9 6.3E-10 2.2E-14 72.7 2.1 46 14-60 11-59 (71)
28 1z6u_A NP95-like ring finger p 98.9 5.3E-10 1.8E-14 83.8 1.5 59 17-76 77-144 (150)
29 2ecy_A TNF receptor-associated 98.8 5.8E-10 2E-14 71.8 0.9 45 15-60 12-60 (66)
30 2yu4_A E3 SUMO-protein ligase 98.8 1.3E-09 4.4E-14 75.4 2.3 59 16-74 5-79 (94)
31 2yur_A Retinoblastoma-binding 98.8 1.3E-09 4.3E-14 72.0 2.0 45 15-60 12-62 (74)
32 3ng2_A RNF4, snurf, ring finge 98.8 4.2E-10 1.4E-14 73.0 -0.3 48 13-60 5-61 (71)
33 2c2l_A CHIP, carboxy terminus 98.8 1.6E-09 5.4E-14 86.6 2.9 58 15-73 205-270 (281)
34 1chc_A Equine herpes virus-1 r 98.8 2.9E-09 9.9E-14 68.6 2.7 46 15-60 2-50 (68)
35 2ysj_A Tripartite motif-contai 98.8 1.4E-09 4.9E-14 69.2 1.2 41 15-56 17-63 (63)
36 1jm7_A BRCA1, breast cancer ty 98.8 3.8E-10 1.3E-14 79.4 -1.8 43 17-60 20-68 (112)
37 1g25_A CDK-activating kinase a 98.8 8.8E-10 3E-14 70.7 -0.0 45 16-60 1-53 (65)
38 2ea6_A Ring finger protein 4; 98.7 7.3E-10 2.5E-14 71.2 -0.6 50 11-60 8-66 (69)
39 2ea5_A Cell growth regulator w 98.7 4.4E-09 1.5E-13 68.8 2.4 53 6-60 3-56 (68)
40 4ic3_A E3 ubiquitin-protein li 98.7 2.9E-09 1E-13 70.4 1.3 42 17-60 23-65 (74)
41 2xeu_A Ring finger protein 4; 98.7 1.5E-09 5.1E-14 68.8 -0.7 44 17-60 2-54 (64)
42 2ct2_A Tripartite motif protei 98.7 6.4E-09 2.2E-13 69.9 2.2 45 15-60 12-66 (88)
43 1iym_A EL5; ring-H2 finger, ub 98.7 1.2E-08 4E-13 63.0 3.2 45 16-60 3-53 (55)
44 2ecm_A Ring finger and CHY zin 98.6 1.4E-08 4.7E-13 62.6 2.6 45 16-60 3-53 (55)
45 2ecg_A Baculoviral IAP repeat- 98.6 4.4E-09 1.5E-13 69.6 0.4 42 17-60 24-66 (75)
46 2f42_A STIP1 homology and U-bo 98.6 9.5E-09 3.3E-13 79.4 2.1 57 15-72 103-167 (179)
47 2ecj_A Tripartite motif-contai 98.6 5.7E-09 1.9E-13 64.9 0.7 41 15-56 12-58 (58)
48 2ect_A Ring finger protein 126 98.6 2.1E-08 7.2E-13 66.2 3.1 46 15-60 12-62 (78)
49 2ep4_A Ring finger protein 24; 98.6 1.3E-08 4.6E-13 66.5 1.3 47 14-60 11-62 (74)
50 2ecn_A Ring finger protein 141 98.6 5.7E-09 1.9E-13 67.6 -0.5 45 14-60 11-58 (70)
51 2kiz_A E3 ubiquitin-protein li 98.6 1.9E-08 6.3E-13 65.0 1.9 47 14-60 10-61 (69)
52 4ap4_A E3 ubiquitin ligase RNF 98.5 8.5E-09 2.9E-13 73.8 -0.1 46 15-60 4-58 (133)
53 1x4j_A Ring finger protein 38; 98.5 2.6E-08 8.8E-13 65.5 2.1 45 16-60 21-70 (75)
54 3htk_C E3 SUMO-protein ligase 98.5 2E-08 6.7E-13 81.8 1.5 60 13-72 176-246 (267)
55 2yho_A E3 ubiquitin-protein li 98.5 3.1E-08 1E-12 66.5 1.4 42 17-60 17-59 (79)
56 2ecl_A Ring-box protein 2; RNF 98.4 8.9E-08 3E-12 64.2 2.2 53 8-60 5-74 (81)
57 2l0b_A E3 ubiquitin-protein li 98.4 5.9E-08 2E-12 66.4 1.3 45 16-60 38-87 (91)
58 1v87_A Deltex protein 2; ring- 98.3 1E-07 3.5E-12 67.2 1.5 48 13-60 20-92 (114)
59 4ap4_A E3 ubiquitin ligase RNF 98.3 8.8E-08 3E-12 68.4 0.9 52 9-60 63-123 (133)
60 2vje_A E3 ubiquitin-protein li 98.3 8.6E-08 2.9E-12 61.7 0.6 48 13-60 3-55 (64)
61 3t6p_A Baculoviral IAP repeat- 98.3 4.2E-07 1.5E-11 76.5 3.8 42 17-60 294-336 (345)
62 1wim_A KIAA0161 protein; ring 98.2 2.9E-07 1E-11 63.1 0.4 44 16-59 3-61 (94)
63 2y1n_A E3 ubiquitin-protein li 98.2 5.9E-07 2E-11 76.7 2.2 42 18-60 332-377 (389)
64 2vje_B MDM4 protein; proto-onc 98.1 4.7E-07 1.6E-11 58.0 0.4 44 17-60 6-54 (63)
65 3dpl_R Ring-box protein 1; ubi 97.9 4.1E-06 1.4E-10 59.2 2.9 46 15-60 34-99 (106)
66 4a0k_B E3 ubiquitin-protein li 97.7 8.6E-06 2.9E-10 58.7 1.6 47 14-60 44-110 (117)
67 2yuc_A TNF receptor-associated 97.7 1E-05 3.5E-10 53.1 1.2 40 79-119 4-43 (76)
68 2bay_A PRE-mRNA splicing facto 97.6 1.5E-05 5.2E-10 50.8 1.3 43 18-60 3-48 (61)
69 3vk6_A E3 ubiquitin-protein li 97.3 4.3E-05 1.5E-09 53.5 0.7 80 20-120 3-89 (101)
70 2yre_A F-box only protein 30; 96.8 0.00025 8.6E-09 49.6 0.9 41 75-115 48-90 (100)
71 2yuc_A TNF receptor-associated 96.8 0.00085 2.9E-08 43.7 2.9 38 75-114 27-65 (76)
72 2d8s_A Cellular modulator of i 96.7 0.00082 2.8E-08 44.9 2.5 56 3-60 2-68 (80)
73 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.0011 3.9E-08 55.9 1.5 45 16-60 306-371 (381)
74 2ct0_A Non-SMC element 1 homol 95.9 0.0034 1.2E-07 41.4 2.1 48 12-60 9-62 (74)
75 2jun_A Midline-1; B-BOX, TRIM, 95.8 0.0023 7.8E-08 43.7 1.0 32 17-48 2-35 (101)
76 2d9k_A FLN29 gene product; zin 94.6 0.0023 7.9E-08 41.5 -2.0 34 79-114 31-64 (75)
77 2d9k_A FLN29 gene product; zin 94.3 0.023 7.7E-07 36.6 2.3 33 78-112 3-36 (75)
78 3hcs_A TNF receptor-associated 92.1 0.046 1.6E-06 40.4 1.3 40 74-115 119-159 (170)
79 2cup_A Skeletal muscle LIM-pro 90.9 0.1 3.6E-06 35.0 1.9 45 16-60 31-76 (101)
80 2jne_A Hypothetical protein YF 89.6 0.11 3.7E-06 36.0 1.1 37 19-60 33-71 (101)
81 1wg2_A Zinc finger (AN1-like) 88.2 0.37 1.3E-05 30.8 2.8 45 14-58 11-55 (64)
82 2xqn_T Testin, TESS; metal-bin 87.0 0.27 9.1E-06 34.3 1.9 45 16-60 28-73 (126)
83 1wfh_A Zinc finger (AN1-like) 86.3 0.57 2E-05 29.9 2.9 41 16-56 13-53 (64)
84 2ct7_A Ring finger protein 31; 86.3 0.45 1.5E-05 31.6 2.6 35 15-49 22-61 (86)
85 1vyx_A ORF K3, K3RING; zinc-bi 84.0 0.31 1.1E-05 30.3 0.9 46 15-60 3-57 (60)
86 2jrp_A Putative cytoplasmic pr 83.8 0.44 1.5E-05 31.8 1.6 37 19-60 3-41 (81)
87 1z2q_A LM5-1; membrane protein 83.8 0.71 2.4E-05 30.5 2.6 36 13-48 16-54 (84)
88 2yw8_A RUN and FYVE domain-con 83.6 0.77 2.6E-05 30.2 2.8 36 13-48 14-52 (82)
89 1z60_A TFIIH basal transcripti 83.6 0.48 1.7E-05 29.7 1.6 37 20-56 17-58 (59)
90 1x61_A Thyroid receptor intera 82.7 0.33 1.1E-05 30.4 0.6 41 16-56 31-71 (72)
91 2cs3_A Protein C14ORF4, MY039 82.5 0.32 1.1E-05 32.7 0.5 36 13-48 10-48 (93)
92 1joc_A EEA1, early endosomal a 82.5 0.57 1.9E-05 33.4 1.8 35 14-48 65-102 (125)
93 2jmo_A Parkin; IBR, E3 ligase, 82.4 0.82 2.8E-05 29.9 2.5 42 15-58 22-75 (80)
94 1iml_A CRIP, cysteine rich int 82.2 0.78 2.7E-05 29.0 2.3 45 16-60 25-71 (76)
95 1x4u_A Zinc finger, FYVE domai 81.1 0.91 3.1E-05 29.9 2.4 36 13-48 9-47 (84)
96 2eod_A TNF receptor-associated 80.1 1.2 4.2E-05 26.7 2.6 28 85-114 4-31 (66)
97 3nw0_A Non-structural maintena 79.0 1 3.5E-05 35.5 2.4 43 17-60 179-227 (238)
98 1x68_A FHL5 protein; four-and- 77.7 2 6.9E-05 27.0 3.2 41 16-56 33-74 (76)
99 1wfp_A Zinc finger (AN1-like) 77.1 2.4 8.2E-05 27.7 3.4 41 18-58 25-65 (74)
100 3t7l_A Zinc finger FYVE domain 76.4 1.4 4.8E-05 29.5 2.2 36 14-49 16-54 (90)
101 2eod_A TNF receptor-associated 76.3 1.1 3.6E-05 27.0 1.5 38 80-118 25-63 (66)
102 2yre_A F-box only protein 30; 75.1 2.4 8E-05 29.3 3.1 22 74-95 77-98 (100)
103 2xjy_A Rhombotin-2; oncoprotei 74.6 0.92 3.2E-05 31.6 0.9 45 16-60 27-76 (131)
104 2jtn_A LIM domain-binding prot 74.2 1.3 4.6E-05 32.8 1.8 44 16-60 85-129 (182)
105 2yt9_A Zinc finger-containing 73.8 2.4 8.1E-05 26.8 2.8 83 16-119 5-92 (95)
106 2ko5_A Ring finger protein Z; 73.2 1.2 4E-05 30.7 1.1 41 18-60 28-71 (99)
107 1y02_A CARP2, FYVE-ring finger 72.8 1.6 5.3E-05 31.1 1.8 53 6-58 6-65 (120)
108 2vrw_B P95VAV, VAV1, proto-onc 72.8 3.5 0.00012 34.1 4.3 45 9-54 348-396 (406)
109 1vfy_A Phosphatidylinositol-3- 72.3 2.1 7.3E-05 27.3 2.2 29 20-48 13-44 (73)
110 1wfl_A Zinc finger protein 216 72.3 3.1 0.00011 27.2 2.9 39 18-56 25-63 (74)
111 1rut_X Flinc4, fusion protein 72.2 0.63 2.1E-05 34.9 -0.5 45 16-60 30-79 (188)
112 3mjh_B Early endosome antigen 71.6 2.8 9.7E-05 23.3 2.3 25 92-118 6-31 (34)
113 1wff_A Riken cDNA 2810002D23 p 70.6 3.5 0.00012 27.7 3.0 41 18-58 25-66 (85)
114 2rgt_A Fusion of LIM/homeobox 69.7 1.7 5.8E-05 31.9 1.4 44 16-60 31-75 (169)
115 1m3v_A FLIN4, fusion of the LI 69.3 0.97 3.3E-05 31.4 0.0 44 17-60 31-79 (122)
116 1wfk_A Zinc finger, FYVE domai 68.9 3.1 0.00011 27.7 2.5 33 16-48 7-42 (88)
117 2fiy_A Protein FDHE homolog; F 68.7 2.2 7.4E-05 35.0 2.0 43 17-59 181-231 (309)
118 1zw8_A Zinc-responsive transcr 67.9 3 0.0001 25.8 2.1 26 91-116 38-64 (64)
119 2d8z_A Four and A half LIM dom 67.1 2 6.7E-05 26.5 1.1 33 17-49 30-62 (70)
120 1dvp_A HRS, hepatocyte growth 66.9 2.8 9.7E-05 32.2 2.2 30 19-48 162-194 (220)
121 1x4l_A Skeletal muscle LIM-pro 65.9 2.1 7.1E-05 26.6 1.1 34 16-49 33-66 (72)
122 1x3c_A Zinc finger protein 292 64.9 4.6 0.00016 26.3 2.6 28 90-117 26-54 (73)
123 2eln_A Zinc finger protein 406 64.8 5.1 0.00017 22.0 2.5 25 90-114 8-33 (38)
124 3m62_A Ubiquitin conjugation f 64.5 2.9 9.9E-05 39.4 2.2 57 15-72 888-952 (968)
125 1a7i_A QCRP2 (LIM1); LIM domai 64.1 2 6.7E-05 27.4 0.7 42 16-57 32-74 (81)
126 2ehe_A Four and A half LIM dom 63.5 4.2 0.00014 25.7 2.3 33 17-49 42-74 (82)
127 1nyp_A Pinch protein; LIM doma 63.5 1.8 6.2E-05 26.4 0.4 31 18-48 31-61 (66)
128 1sp2_A SP1F2; zinc finger, tra 62.7 7.9 0.00027 18.7 2.9 26 90-115 1-27 (31)
129 2cu8_A Cysteine-rich protein 2 62.4 3.4 0.00012 25.9 1.6 33 17-49 35-68 (76)
130 1wyh_A SLIM 2, skeletal muscle 62.2 2.7 9.3E-05 25.9 1.1 33 17-49 32-64 (72)
131 2egq_A FHL1 protein; LIM domai 62.1 1.9 6.5E-05 27.1 0.3 30 18-47 46-75 (77)
132 1x4k_A Skeletal muscle LIM-pro 60.5 2.6 9E-05 26.0 0.8 34 16-49 31-64 (72)
133 2cur_A Skeletal muscle LIM-pro 60.5 2.4 8.1E-05 26.0 0.6 34 16-49 29-62 (69)
134 2iyb_E Testin, TESS, TES; LIM 60.2 2.9 9.8E-05 25.5 0.9 34 16-49 30-64 (65)
135 1wig_A KIAA1808 protein; LIM d 59.4 3.4 0.00012 25.9 1.2 34 16-49 29-63 (73)
136 2d8x_A Protein pinch; LIM doma 58.6 2.4 8.4E-05 26.1 0.4 34 16-49 29-62 (70)
137 2dar_A PDZ and LIM domain prot 58.3 3.8 0.00013 26.6 1.3 30 19-48 52-81 (90)
138 3zyq_A Hepatocyte growth facto 58.0 5.3 0.00018 30.9 2.3 29 20-48 166-197 (226)
139 1b8t_A Protein (CRP1); LIM dom 57.9 4.5 0.00015 30.1 1.8 45 16-60 140-185 (192)
140 1b8t_A Protein (CRP1); LIM dom 57.9 3 0.0001 31.1 0.8 35 15-49 31-65 (192)
141 1pft_A TFIIB, PFTFIIBN; N-term 57.5 7.2 0.00025 22.7 2.4 31 14-47 1-32 (50)
142 1zfd_A SWI5; DNA binding motif 57.4 13 0.00046 17.9 3.2 26 90-115 2-28 (32)
143 3lqh_A Histone-lysine N-methyl 56.4 19 0.00066 27.1 5.2 41 20-60 4-64 (183)
144 2gmg_A Hypothetical protein PF 55.6 5.7 0.0002 27.6 1.9 24 33-60 68-94 (105)
145 2cor_A Pinch protein; LIM doma 55.1 5.2 0.00018 25.4 1.5 32 17-49 40-71 (79)
146 2jny_A Uncharacterized BCR; st 49.8 11 0.00038 23.9 2.4 29 16-47 8-36 (67)
147 1ncs_A Peptide M30F, transcrip 49.3 11 0.00039 20.6 2.3 27 89-115 16-43 (47)
148 1x63_A Skeletal muscle LIM-pro 49.0 4.7 0.00016 25.5 0.6 32 18-49 43-74 (82)
149 1x4w_A Hypothetical protein FL 49.0 5 0.00017 25.7 0.7 40 17-56 14-56 (67)
150 3i2d_A E3 SUMO-protein ligase 48.7 8.3 0.00028 32.5 2.2 43 18-60 249-298 (371)
151 1g47_A Pinch protein; LIM doma 48.4 4 0.00014 25.5 0.1 31 18-48 39-69 (77)
152 2jr6_A UPF0434 protein NMA0874 48.3 12 0.00041 23.7 2.5 29 16-47 6-34 (68)
153 2dmd_A Zinc finger protein 64, 48.3 14 0.00048 23.0 2.9 85 16-119 6-91 (96)
154 1weo_A Cellulose synthase, cat 47.5 6.1 0.00021 26.8 1.0 48 13-60 11-68 (93)
155 2cuq_A Four and A half LIM dom 47.1 7.7 0.00026 24.3 1.4 33 17-49 40-72 (80)
156 4fo9_A E3 SUMO-protein ligase 46.5 9.6 0.00033 31.9 2.2 55 18-72 215-280 (360)
157 2co8_A NEDD9 interacting prote 46.5 13 0.00044 23.7 2.4 33 17-49 41-75 (82)
158 3f6q_B LIM and senescent cell 45.4 3.8 0.00013 25.0 -0.3 10 20-29 13-22 (72)
159 3mpx_A FYVE, rhogef and PH dom 44.3 4.7 0.00016 33.5 0.0 36 13-48 370-408 (434)
160 1x3h_A Leupaxin; paxillin fami 44.3 6.6 0.00022 24.6 0.7 34 16-49 39-72 (80)
161 1bhi_A CRE-BP1, ATF-2; CRE bin 43.5 17 0.00059 18.4 2.3 27 90-116 5-32 (38)
162 2dlo_A Thyroid receptor-intera 43.4 9.2 0.00032 24.1 1.3 34 16-49 39-73 (81)
163 3ky9_A Proto-oncogene VAV; cal 43.0 27 0.00091 30.4 4.6 48 6-54 517-568 (587)
164 1zbd_B Rabphilin-3A; G protein 42.0 17 0.00058 26.0 2.7 34 16-49 53-90 (134)
165 2drp_A Protein (tramtrack DNA- 42.0 17 0.00058 21.0 2.3 27 89-117 38-65 (66)
166 1x64_A Alpha-actinin-2 associa 41.9 6.3 0.00022 25.4 0.3 12 19-30 26-37 (89)
167 2ct1_A Transcriptional repress 41.6 20 0.0007 21.5 2.8 28 90-119 44-72 (77)
168 2d8y_A Eplin protein; LIM doma 41.4 8.8 0.0003 24.8 1.0 31 19-49 43-73 (91)
169 1lpv_A Doublesex protein; tran 41.1 13 0.00045 22.5 1.6 25 77-103 19-43 (52)
170 2hf1_A Tetraacyldisaccharide-1 40.9 15 0.00053 23.2 2.1 29 16-47 6-34 (68)
171 2js4_A UPF0434 protein BB2007; 40.8 16 0.00055 23.3 2.2 29 16-47 6-34 (70)
172 2yqq_A Zinc finger HIT domain- 39.0 16 0.00055 22.4 1.8 26 20-48 14-41 (56)
173 2gli_A Protein (five-finger GL 39.0 28 0.00097 23.6 3.5 27 90-116 127-154 (155)
174 2ab3_A ZNF29; zinc finger prot 38.9 22 0.00074 16.3 2.1 24 91-114 2-26 (29)
175 2dj7_A Actin-binding LIM prote 38.0 13 0.00045 23.5 1.4 31 17-48 41-71 (80)
176 1wfe_A Riken cDNA 2310008M20 p 37.8 20 0.00069 23.7 2.4 38 16-54 23-63 (86)
177 2pk7_A Uncharacterized protein 37.2 16 0.00056 23.2 1.7 29 16-47 6-34 (69)
178 2zet_C Melanophilin; complex, 37.1 19 0.00066 26.3 2.4 43 17-59 67-117 (153)
179 1wjp_A Zinc finger protein 295 37.0 21 0.00072 22.9 2.4 83 15-119 13-96 (107)
180 2ee8_A Protein ODD-skipped-rel 36.9 58 0.002 20.4 4.6 84 15-118 14-99 (106)
181 2jvx_A NF-kappa-B essential mo 36.5 12 0.0004 19.8 0.8 11 18-28 3-13 (28)
182 1klr_A Zinc finger Y-chromosom 36.3 33 0.0011 15.6 2.6 26 91-118 2-28 (30)
183 1va1_A Transcription factor SP 36.3 25 0.00086 17.8 2.2 26 90-115 7-33 (37)
184 3pwf_A Rubrerythrin; non heme 36.0 24 0.00083 26.1 2.8 26 30-59 136-162 (170)
185 1wys_A Riken cDNA 2310008M20 p 35.3 31 0.0011 22.3 2.9 36 19-55 15-53 (75)
186 2l3k_A Rhombotin-2, linker, LI 35.1 18 0.00063 24.7 1.9 43 16-58 34-78 (123)
187 2c6a_A Ubiquitin-protein ligas 34.4 13 0.00046 21.9 0.9 27 15-48 10-36 (46)
188 1x5w_A Zinc finger protein 64, 33.7 30 0.001 20.2 2.6 28 90-119 36-64 (70)
189 2m0e_A Zinc finger and BTB dom 33.5 36 0.0012 15.3 2.5 24 91-116 2-26 (29)
190 1d4u_A Nucleotide excision rep 33.3 20 0.00067 25.0 1.8 33 16-48 3-35 (111)
191 1x6a_A LIMK-2, LIM domain kina 33.1 14 0.00049 23.1 1.0 33 17-49 40-74 (81)
192 2kpi_A Uncharacterized protein 33.0 12 0.0004 22.8 0.5 26 16-46 8-35 (56)
193 6rxn_A Rubredoxin; electron tr 32.9 37 0.0013 19.8 2.7 36 16-59 2-39 (46)
194 3uk3_C Zinc finger protein 217 32.8 24 0.00084 19.5 1.9 26 90-117 31-57 (57)
195 2lv9_A Histone-lysine N-methyl 32.8 94 0.0032 20.5 5.2 44 16-60 26-77 (98)
196 2lri_C Autoimmune regulator; Z 32.5 16 0.00056 22.8 1.2 41 17-59 11-59 (66)
197 1rik_A E6APC1 peptide; E6-bind 32.4 37 0.0013 15.5 2.4 24 91-116 2-26 (29)
198 1p91_A Ribosomal RNA large sub 32.2 22 0.00076 26.8 2.1 23 19-41 3-27 (269)
199 1ard_A Yeast transcription fac 32.1 41 0.0014 15.2 2.7 24 91-116 2-26 (29)
200 1x62_A C-terminal LIM domain p 31.9 4.5 0.00015 25.6 -1.7 17 16-32 13-29 (79)
201 1flk_A TNF receptor associated 31.9 11 0.00039 28.8 0.4 25 90-114 8-39 (228)
202 1j2o_A FLIN2, fusion of rhombo 31.8 13 0.00045 25.1 0.7 42 16-57 28-72 (114)
203 1dl6_A Transcription factor II 31.6 33 0.0011 20.8 2.4 32 15-48 8-39 (58)
204 2adr_A ADR1; transcription reg 31.1 32 0.0011 19.3 2.3 28 90-119 29-57 (60)
205 2wbt_A B-129; zinc finger; 2.7 29.5 41 0.0014 22.2 2.9 30 89-120 98-128 (129)
206 1paa_A Yeast transcription fac 29.4 48 0.0016 15.2 2.6 25 91-117 2-27 (30)
207 2cr8_A MDM4 protein; ZF-ranbp 29.3 24 0.00083 21.3 1.5 28 14-48 7-34 (53)
208 2jp9_A Wilms tumor 1; DNA bind 29.0 50 0.0017 21.1 3.3 39 80-118 24-64 (119)
209 2dlk_A Novel protein; ZF-C2H2 28.9 36 0.0012 20.2 2.3 27 90-116 6-33 (79)
210 2d9h_A Zinc finger protein 692 28.7 22 0.00075 21.3 1.3 29 90-120 37-66 (78)
211 1x4v_A Hypothetical protein LO 28.5 26 0.0009 21.9 1.6 36 18-54 12-50 (63)
212 2elx_A Zinc finger protein 406 28.3 45 0.0016 16.0 2.4 26 90-117 6-32 (35)
213 2kvf_A Zinc finger and BTB dom 27.2 41 0.0014 15.3 2.0 23 90-114 2-25 (28)
214 1f2i_G Fusion of N-terminal 17 27.1 39 0.0013 19.7 2.3 29 90-118 18-47 (73)
215 1a1h_A QGSR zinc finger peptid 26.6 39 0.0013 20.4 2.3 27 90-118 33-60 (90)
216 2elp_A Zinc finger protein 406 26.6 38 0.0013 16.8 1.9 24 90-115 8-33 (37)
217 2m0f_A Zinc finger and BTB dom 26.3 45 0.0015 15.0 2.0 24 91-116 2-26 (29)
218 2k5c_A Uncharacterized protein 25.8 21 0.00073 23.8 0.8 30 51-80 52-90 (95)
219 2epa_A Krueppel-like factor 10 25.4 49 0.0017 19.3 2.5 29 90-118 16-45 (72)
220 2m0d_A Zinc finger and BTB dom 25.3 56 0.0019 14.7 2.3 25 90-116 2-27 (30)
221 2elt_A Zinc finger protein 406 24.9 56 0.0019 15.8 2.4 24 90-115 8-32 (36)
222 2ctd_A Zinc finger protein 512 24.9 38 0.0013 21.8 2.0 29 88-118 59-88 (96)
223 1srk_A Zinc finger protein ZFP 24.8 62 0.0021 15.6 2.5 25 90-116 6-31 (35)
224 2elo_A Zinc finger protein 406 24.4 47 0.0016 16.3 2.0 26 90-117 8-34 (37)
225 1rim_A E6APC2 peptide; E6-bind 24.1 71 0.0024 15.5 2.7 24 91-116 2-26 (33)
226 1gh9_A 8.3 kDa protein (gene M 24.1 46 0.0016 21.2 2.2 8 52-60 23-30 (71)
227 2lv2_A Insulinoma-associated p 23.8 47 0.0016 21.2 2.3 27 90-118 55-82 (85)
228 2j7j_A Transcription factor II 23.7 46 0.0016 19.7 2.2 38 80-117 19-58 (85)
229 2k9h_A Glycoprotein; hantaviru 23.6 43 0.0015 20.5 1.8 33 78-114 17-51 (57)
230 2d8v_A Zinc finger FYVE domain 23.5 38 0.0013 21.5 1.7 32 16-50 6-39 (67)
231 1wen_A Inhibitor of growth fam 23.3 68 0.0023 20.1 2.9 45 15-60 13-66 (71)
232 2elq_A Zinc finger protein 406 23.2 60 0.002 15.8 2.3 24 90-115 8-32 (36)
233 2k5r_A Uncharacterized protein 22.8 36 0.0012 23.1 1.6 43 16-60 6-63 (97)
234 2els_A Zinc finger protein 406 22.8 64 0.0022 15.7 2.3 24 90-115 8-32 (36)
235 2l4z_A DNA endonuclease RBBP8, 22.6 19 0.00066 24.9 0.1 14 18-31 61-74 (123)
236 2enn_A NPKC-theta, protein kin 22.5 1.5E+02 0.0051 18.5 5.1 42 13-54 29-74 (77)
237 2kdx_A HYPA, hydrogenase/ureas 22.3 68 0.0023 21.8 3.0 9 52-60 92-100 (119)
238 1p7a_A BF3, BKLF, kruppel-like 22.3 80 0.0027 15.3 2.9 24 90-115 10-34 (37)
239 2vy4_A U11/U12 small nuclear r 22.1 69 0.0024 17.6 2.4 25 90-115 4-28 (37)
240 1wvk_A AT2G23090/F21P24.15; st 22.0 34 0.0012 22.8 1.3 27 91-119 45-75 (86)
241 2wbs_A Krueppel-like factor 4; 21.6 58 0.002 19.6 2.3 40 79-118 22-63 (89)
242 1dx8_A Rubredoxin; electron tr 21.5 63 0.0022 20.4 2.5 41 14-59 3-49 (70)
243 4cpa_I Metallocarboxypeptidase 21.5 33 0.0011 19.1 0.9 26 22-49 6-31 (38)
244 1xau_A B- and T-lymphocyte att 21.3 39 0.0013 23.9 1.5 44 1-44 16-59 (122)
245 1bbo_A Human enhancer-binding 21.1 59 0.002 17.7 2.1 27 90-118 28-55 (57)
246 1yuz_A Nigerythrin; rubrythrin 21.0 60 0.0021 24.5 2.7 25 31-59 170-195 (202)
247 1lko_A Rubrerythrin all-iron(I 20.7 48 0.0016 24.7 2.0 9 51-59 172-180 (191)
248 1faq_A RAF-1; transferase, ser 20.6 1.3E+02 0.0043 17.0 4.0 37 16-53 12-49 (52)
249 1v6g_A Actin binding LIM prote 20.6 25 0.00086 21.9 0.4 12 18-29 41-52 (81)
250 1x6e_A Zinc finger protein 24; 20.5 60 0.002 19.0 2.2 27 90-118 41-68 (72)
251 4i1l_A Scurfin, forkhead box p 20.4 30 0.001 23.4 0.7 25 93-117 14-39 (93)
252 2jx1_A Myelin transcription fa 20.4 41 0.0014 18.1 1.2 13 92-104 2-14 (31)
253 2ytb_A Zinc finger protein 32; 20.3 84 0.0029 15.8 2.6 26 90-117 10-36 (42)
254 3c6w_A P28ING5, inhibitor of g 20.3 38 0.0013 20.5 1.1 43 15-58 6-57 (59)
255 2dlq_A GLI-kruppel family memb 20.1 63 0.0022 20.7 2.4 38 80-119 82-121 (124)
256 2k16_A Transcription initiatio 20.1 54 0.0019 20.3 1.9 45 16-60 16-69 (75)
257 2ebt_A Krueppel-like factor 5; 20.0 85 0.0029 19.2 3.0 38 80-117 33-72 (100)
258 2elv_A Zinc finger protein 406 20.0 75 0.0026 15.4 2.3 23 90-114 8-31 (36)
No 1
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.79 E-value=5.1e-20 Score=140.24 Aligned_cols=105 Identities=22% Similarity=0.448 Sum_probs=90.6
Q ss_pred eCCCeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc----chhhHHHHHHHH------------h
Q 042263 14 SDQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV----MLRSRVMDIALE------------K 73 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~----~~rn~~le~~~~------------~ 73 (159)
.-.+.|.||||+++|.+|+. ++|||+||..|+.++. .+||.||.++ ..++.++++++. .
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~ 92 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLH 92 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCC
T ss_pred CCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCc
Confidence 34568999999999999965 7999999999999874 4899999998 246778888777 4
Q ss_pred hccCCCchhhhccCCCCCCCCCCCCCcceeChhHHHhHhhhhcCCceE
Q 042263 74 TMSFGENKDHERNCQCAPCACPLLDCNFLGSASQLYLYFSWKNGKTFV 121 (159)
Q Consensus 74 ~~~~~~~~~He~~C~~~p~~Cp~~gC~~~g~~~~l~~H~~~~H~~~~~ 121 (159)
++++.++++|+++|+|+++.|| +|+|.+.+.+|..|+....+.+.+
T Consensus 93 ~~~~~~l~~H~~~C~~~~v~C~--~C~~~~~r~~l~~H~~~~C~~r~~ 138 (170)
T 3hcs_A 93 KMELRHLEDHQAHCEFALMDCP--QCQRPFQKFHINIHILKDCPRRQV 138 (170)
T ss_dssp EEEGGGHHHHHTTCTTSEEECT--TTCCEEEGGGHHHHHHHTCTTCEE
T ss_pred eecHhHHHHHHhcCCceeeECC--CCChHHHHHHHHHHhhhhCCCCCe
Confidence 6778899999999999999998 799999999999999877776654
No 2
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.57 E-value=4.9e-16 Score=111.92 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=71.8
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc----chhhHHHHHHHHhhccCCCchhhhcc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV----MLRSRVMDIALEKTMSFGENKDHERN 86 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~----~~rn~~le~~~~~~~~~~~~~~He~~ 86 (159)
-.+.+.|+||++++.+|+. ..|||+||..|+.++. ..||.||.++ ..++..+++++...
T Consensus 15 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l------------ 81 (118)
T 3hct_A 15 LESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL------------ 81 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS------------
T ss_pred CCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc------------
Confidence 3457899999999999976 4899999999998863 3899999998 23567777776533
Q ss_pred CCCCCCCCCCCCCcceeChhHHHhHhhhhcCCc
Q 042263 87 CQCAPCACPLLDCNFLGSASQLYLYFSWKNGKT 119 (159)
Q Consensus 87 C~~~p~~Cp~~gC~~~g~~~~l~~H~~~~H~~~ 119 (159)
.++||+.||+|+|...++..|+...+...
T Consensus 82 ----~v~C~n~gC~~~~~~~~l~~H~~~c~~~~ 110 (118)
T 3hct_A 82 ----MVKCPNEGCLHKMELRHLEDHQAHCEFAL 110 (118)
T ss_dssp ----EEECSSTTCCCEEEGGGSGGGTSSSCC--
T ss_pred ----eeECCCCCCCCEEeeHHHHHHHHHchhhh
Confidence 45898889999999999999998877653
No 3
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.51 E-value=1.4e-15 Score=113.36 Aligned_cols=82 Identities=23% Similarity=0.451 Sum_probs=65.6
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc-c------------hhhHHHHHHHHhhccCC
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV-M------------LRSRVMDIALEKTMSFG 78 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~-~------------~rn~~le~~~~~~~~~~ 78 (159)
.+.+.||||+++|.+|+. ..|||+||..|+.++. ..||.||.++ . .++..+++.+.+.
T Consensus 29 ~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L---- 103 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL---- 103 (141)
T ss_dssp CGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS----
T ss_pred CcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc----
Confidence 467899999999999965 6899999999999874 3799999974 1 1455566655422
Q ss_pred CchhhhccCCCCCCCCCCCCCcceeChhHHHh-Hhhh
Q 042263 79 ENKDHERNCQCAPCACPLLDCNFLGSASQLYL-YFSW 114 (159)
Q Consensus 79 ~~~~He~~C~~~p~~Cp~~gC~~~g~~~~l~~-H~~~ 114 (159)
.++||+.||+|+|...++.. |+..
T Consensus 104 ------------~v~Cpn~GC~~~~~l~~l~~~H~~~ 128 (141)
T 3knv_A 104 ------------PAVCPSDGCTWKGTLKEYESCHEGR 128 (141)
T ss_dssp ------------EEECCSTTCCCEEEHHHHHHHTTTC
T ss_pred ------------ccccCCCCCCCEeEHHHHHHHHHHH
Confidence 45899899999999999998 9864
No 4
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.49 E-value=7.3e-15 Score=105.11 Aligned_cols=82 Identities=24% Similarity=0.392 Sum_probs=65.5
Q ss_pred CeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc-c----hhhHHHHHHHHhhccCCCchhhhccC
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV-M----LRSRVMDIALEKTMSFGENKDHERNC 87 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~-~----~rn~~le~~~~~~~~~~~~~~He~~C 87 (159)
+.+.||||++++.+|+. .+|||+||..|+.++. ..||.||.++ . ..+..+++++...
T Consensus 22 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l------------- 87 (116)
T 1rmd_A 22 KSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL------------- 87 (116)
T ss_dssp HHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC-------------
T ss_pred CCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh-------------
Confidence 46889999999999976 5899999999998763 4799999998 1 2244555555422
Q ss_pred CCCCCCCCCCCCcceeChhHHHhHhhhh
Q 042263 88 QCAPCACPLLDCNFLGSASQLYLYFSWK 115 (159)
Q Consensus 88 ~~~p~~Cp~~gC~~~g~~~~l~~H~~~~ 115 (159)
.+.||+.||+|.+...++..|+...
T Consensus 88 ---~v~C~~~gC~~~~~~~~~~~H~~~C 112 (116)
T 1rmd_A 88 ---MVKCPAQDCNEEVSLEKYNHHVSSH 112 (116)
T ss_dssp ---EEECCSTTCCCEEEHHHHHHHHHTS
T ss_pred ---cCCCCCCCCcchhhHhHHHHHHHHh
Confidence 3478888999999999999999764
No 5
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=99.38 E-value=6.1e-13 Score=103.86 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=40.6
Q ss_pred hhccCCCchhhhccCCCCCCCCCCCC--CcceeChhHHHhHhhhhcCCceEEEEeCcEEE-EEEeCC----CcEEEEEEc
Q 042263 73 KTMSFGENKDHERNCQCAPCACPLLD--CNFLGSASQLYLYFSWKNGKTFVSFTYKKRVK-VTLNVN----DSVFLFRQQ 145 (159)
Q Consensus 73 ~~~~~~~~~~He~~C~~~p~~Cp~~g--C~~~g~~~~l~~H~~~~H~~~~~~~~~~~~~~-~~~~~~----~~~~~l~~~ 145 (159)
++++|.++.+||++|+|+|+.||.+| |+|+|..++|..|+.++|+|..+ ..|..+. +..+.+ .+.. +...
T Consensus 18 ~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~--~~g~~i~f~~~~~~l~~~~~~~-~v~~ 94 (193)
T 2a25_A 18 ITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITT--LQGEDIVFLATDINLPGAVDWV-MMQS 94 (193)
T ss_dssp ------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCE--EESSEEEEEEECCC----CEEE-EEEE
T ss_pred cccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcce--ecCceEEEEecccccccceeEE-EEEE
Confidence 67889999999999999999999986 99999999999999999998432 2222211 222222 2333 3335
Q ss_pred CCCcEEEEEc
Q 042263 146 KNGHLFSLKN 155 (159)
Q Consensus 146 ~d~~lF~l~~ 155 (159)
.+|+.|+|.+
T Consensus 95 ~~g~~Fll~~ 104 (193)
T 2a25_A 95 CFGFHFMLVL 104 (193)
T ss_dssp ETTEEEEEEE
T ss_pred ecCceEEEEE
Confidence 6788777753
No 6
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.11 E-value=9.4e-12 Score=87.02 Aligned_cols=68 Identities=22% Similarity=0.477 Sum_probs=49.0
Q ss_pred CeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc----chhhHHHHHHHH--hhccCCCchhhh
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV----MLRSRVMDIALE--KTMSFGENKDHE 84 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~----~~rn~~le~~~~--~~~~~~~~~~He 84 (159)
+.+.|+||++++.+|+..-.|||.||..|+.++. ..||.||.++ ..+++.++.+++ +.+....+..|+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~ 98 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHE 98 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC-------
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHHHHhhhhc
Confidence 5789999999999998745789999999999873 4799999998 345677777766 445555555554
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.09 E-value=1.5e-11 Score=81.68 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=46.8
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc----chhhHHHHHHHH
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV----MLRSRVMDIALE 72 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~----~~rn~~le~~~~ 72 (159)
++.+.||||+++|.+|+.. .|||+||..|+.++. ..||.||.++ ...|..++++++
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~ 69 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIA 69 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHH
T ss_pred cccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHH
Confidence 5689999999999999875 799999999998763 4699999998 345777777766
No 8
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=6.7e-11 Score=84.69 Aligned_cols=57 Identities=26% Similarity=0.576 Sum_probs=48.8
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC-CCCCCCccCc----chhhHHHHHHHH
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN-NKCPACRSCV----MLRSRVMDIALE 72 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~-~~CP~Cr~~~----~~rn~~le~~~~ 72 (159)
.+.+.||||++++.+|+....|||+||..|+.++. ..||.||.++ ...|..+.++++
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~ 81 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQ 81 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHH
Confidence 35789999999999998765789999999999876 4899999998 355888888877
No 9
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.06 E-value=4.4e-11 Score=81.74 Aligned_cols=56 Identities=20% Similarity=0.463 Sum_probs=47.4
Q ss_pred CCeeecccccccCCCceeecc-CCceeccccccccC-----CCCCCCccCc-----chhhHHHHHHHH
Q 042263 16 QDLFDCPIWYQALKVPVSQSI-NGHIICSSCLAKVN-----NKCPACRSCV-----MLRSRVMDIALE 72 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~~-----~~CP~Cr~~~-----~~rn~~le~~~~ 72 (159)
.+.+.||||+++|.+|+.. + |||+||..|+.++. ..||.||.++ ...|..++++++
T Consensus 11 ~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~ 77 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVN 77 (92)
T ss_dssp CTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHH
T ss_pred CcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHH
Confidence 5679999999999999875 6 89999999998763 4799999986 346888888877
No 10
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.04 E-value=8.5e-12 Score=82.75 Aligned_cols=54 Identities=28% Similarity=0.612 Sum_probs=42.7
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccC----------CCCCCCccCc----chhhHHHHH
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----------NKCPACRSCV----MLRSRVMDI 69 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----------~~CP~Cr~~~----~~rn~~le~ 69 (159)
..+.+.|+||++.+.+|+. .+|||.||..|+.++. ..||.||.++ ..+|..+++
T Consensus 9 ~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred cccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 4568899999999999976 4899999999998753 3699999998 234544443
No 11
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.01 E-value=5.7e-11 Score=82.42 Aligned_cols=56 Identities=27% Similarity=0.634 Sum_probs=47.5
Q ss_pred CeeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc----chhhHHHHHHHH
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV----MLRSRVMDIALE 72 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~----~~rn~~le~~~~ 72 (159)
+.+.|+||++.+.+|+..-.|||.||..|+.++. ..||.||.++ ..+|..++++++
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~ 83 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVK 83 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHH
Confidence 4689999999999997754789999999998863 5799999998 346888888877
No 12
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1.5e-10 Score=72.77 Aligned_cols=45 Identities=24% Similarity=0.515 Sum_probs=39.9
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccCCCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVNNKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~Cr~~~ 60 (159)
+.+.+.|+||++.+.+|+.. +|||+||..|+.+....||.||.++
T Consensus 3 e~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~CP~Cr~~~ 47 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEASGMQCPICQAPW 47 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSSSSSCSSCCSSS
T ss_pred cccCCCceEeCCccCCeEEc-CCCCcccHHHHccCCCCCCcCCcEe
Confidence 56788999999999999764 7899999999988667899999987
No 13
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.01 E-value=1.1e-10 Score=82.08 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=49.5
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc----chhhHHHHHHHHhh
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV----MLRSRVMDIALEKT 74 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~----~~rn~~le~~~~~~ 74 (159)
++.|.||||+++|++||.. .+||+||.+|+.+++ ..||.|+.++ ...|..+.++++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp STTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred cHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 5689999999999999875 689999999999875 5799999998 45688888877743
No 14
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.00 E-value=9.1e-11 Score=86.35 Aligned_cols=55 Identities=25% Similarity=0.470 Sum_probs=43.7
Q ss_pred CeeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc--chhhHHHHHHHH
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV--MLRSRVMDIALE 72 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~--~~rn~~le~~~~ 72 (159)
+.+.||||++++.+|+.. +|||.||..|+.++. ..||.||.++ ...+..++.+++
T Consensus 52 ~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~ 111 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCIN 111 (138)
T ss_dssp HHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHH
T ss_pred ccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHH
Confidence 457899999999999874 799999999998874 5799999998 334555554444
No 15
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.98 E-value=1.2e-10 Score=84.04 Aligned_cols=60 Identities=23% Similarity=0.561 Sum_probs=49.6
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc-----chhhHHHHHHHHhhcc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV-----MLRSRVMDIALEKTMS 76 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~-----~~rn~~le~~~~~~~~ 76 (159)
.+.+.||||++++.+|+.. +|||+||..|+.++. ..||.||.++ ...|..+.++++..++
T Consensus 50 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred ccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 3468899999999999875 899999999998763 3899999998 2468888888875554
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.8e-10 Score=75.19 Aligned_cols=45 Identities=36% Similarity=0.795 Sum_probs=39.4
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccCC------CCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVNN------KCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~------~CP~Cr~~~ 60 (159)
..+.+.|+||++.+.+|+.. .|||.||..|+.++.. .||.||.++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred CccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 45688999999999999875 8999999999988752 799999987
No 17
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.97 E-value=1.5e-10 Score=78.92 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=48.3
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc----chhhHHHHHHHH
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV----MLRSRVMDIALE 72 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~----~~rn~~le~~~~ 72 (159)
++.|.||||+++|++||.. .+||+||.+|+.+++ ..||.|+.++ ...|..+.++++
T Consensus 12 p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~ 74 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQ 74 (85)
T ss_dssp CTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred chheECcccCchhcCCeEC-CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHH
Confidence 5689999999999999875 689999999998874 6899999998 456888877776
No 18
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.95 E-value=2.6e-10 Score=79.91 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=48.6
Q ss_pred CCeeecccccccCCCceeeccCC-ceeccccccccC---CCCCCCccCc----chhhHHHHHHHH
Q 042263 16 QDLFDCPIWYQALKVPVSQSING-HIICSSCLAKVN---NKCPACRSCV----MLRSRVMDIALE 72 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~G-H~~C~~C~~~~~---~~CP~Cr~~~----~~rn~~le~~~~ 72 (159)
++.|.||||+++|++||.. .+| |+||..|+.+++ ..||.|+.++ ...|..+.++++
T Consensus 20 p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~ 83 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQ 83 (98)
T ss_dssp CTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHH
T ss_pred cHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHH
Confidence 5689999999999999874 789 999999999875 5799999998 456888888877
No 19
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.94 E-value=1.9e-10 Score=80.99 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=49.0
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc-c-------hhhHHHHHHHHhhc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV-M-------LRSRVMDIALEKTM 75 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~-~-------~rn~~le~~~~~~~ 75 (159)
.+.+.|+||++++.+|+....|||+||..|+.++. ..||.||..+ . ..|..++++++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 45789999999999998755889999999998873 5799999998 2 34778888877443
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2e-10 Score=76.88 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=44.1
Q ss_pred eeCCCeeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc---chhhHHHHH
Q 042263 13 ISDQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV---MLRSRVMDI 69 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~---~~rn~~le~ 69 (159)
-.+.+.+.|+||++.+.+|+. ..|||.||..|+.++. ..||.||.++ ...|..+.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l~~ 71 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKELMA 71 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHHHHH
Confidence 345568899999999999976 4889999999998874 5799999998 334544433
No 21
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=6.2e-11 Score=79.12 Aligned_cols=45 Identities=33% Similarity=0.747 Sum_probs=38.7
Q ss_pred CCCeeecccccccCCCceeeccCCceecccccccc---------CCCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKV---------NNKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~---------~~~CP~Cr~~~ 60 (159)
..+.+.|+||++.+.+|+.. +|||.||..|+.++ ...||.||..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred ccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 34578999999999999764 88999999999875 35799999998
No 22
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.92 E-value=3.3e-10 Score=80.57 Aligned_cols=45 Identities=29% Similarity=0.572 Sum_probs=39.5
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~ 60 (159)
..+.+.|+||++++.+|+.. .|||+||..|+.++. ..||.||..+
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 44578999999999999876 899999999998874 3799999997
No 23
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.91 E-value=5e-11 Score=79.56 Aligned_cols=54 Identities=28% Similarity=0.575 Sum_probs=42.3
Q ss_pred CCeeecccccccCCCceeeccCCceecccccccc---------CCCCCCCccCc----chhhHHHHHH
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKV---------NNKCPACRSCV----MLRSRVMDIA 70 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~---------~~~CP~Cr~~~----~~rn~~le~~ 70 (159)
.+.+.|+||++.+.+|+. .+|||.||..|+.++ ...||.||.++ ..+|..++++
T Consensus 17 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred ccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 457899999999999975 579999999999875 24799999998 2345444443
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=2.2e-10 Score=75.09 Aligned_cols=46 Identities=26% Similarity=0.466 Sum_probs=39.9
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
..+.+.|+||++.+.+|+..-.|||.||..|+.++. ..||.||.++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 345789999999999998755789999999998863 6899999988
No 25
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.89 E-value=4.2e-10 Score=84.85 Aligned_cols=58 Identities=24% Similarity=0.523 Sum_probs=48.3
Q ss_pred CeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc-----chhhHHHHHHHHhh
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV-----MLRSRVMDIALEKT 74 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~-----~~rn~~le~~~~~~ 74 (159)
+.+.||||++++.+|+....|||.||..|+.++. ..||.||.++ ...|..+++++...
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKI 119 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHH
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHH
Confidence 4679999999999998766899999999998873 4699999988 23578888888743
No 26
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.87 E-value=4.7e-10 Score=75.53 Aligned_cols=46 Identities=28% Similarity=0.618 Sum_probs=37.5
Q ss_pred CCCeeecccccccCC--Cce-eeccCCceeccccccccC----CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALK--VPV-SQSINGHIICSSCLAKVN----NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~--~Pv-~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~ 60 (159)
..+.+.||||++++. ++. ..|.|||.||..|+.+++ ..||.||.++
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 457889999999984 343 346689999999998874 5799999988
No 27
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=6.3e-10 Score=72.68 Aligned_cols=46 Identities=26% Similarity=0.580 Sum_probs=39.9
Q ss_pred eCCCeeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 14 SDQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
...+.+.|+||++.+.+|+.. .|||.||..|+.++. ..||.||..+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred cCCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 456688999999999999765 789999999998864 5799999987
No 28
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.85 E-value=5.3e-10 Score=83.78 Aligned_cols=59 Identities=24% Similarity=0.502 Sum_probs=49.0
Q ss_pred CeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc-c----hhhHHHHHHHHhhcc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV-M----LRSRVMDIALEKTMS 76 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~-~----~rn~~le~~~~~~~~ 76 (159)
+.+.|+||++++.+|+. .+|||+||..|+.++. ..||.||.++ . ..|..++++++..++
T Consensus 77 ~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred cCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 46899999999999987 4899999999998874 3799999998 2 468888888875443
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=5.8e-10 Score=71.78 Aligned_cols=45 Identities=31% Similarity=0.648 Sum_probs=39.1
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~ 60 (159)
..+.+.|+||++.+.+|+. ..|||.||..|+.++. ..||.||.++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred CCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 3568999999999999976 4899999999998763 4799999987
No 30
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=1.3e-09 Score=75.41 Aligned_cols=59 Identities=24% Similarity=0.575 Sum_probs=48.3
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC---------CCCCC--CccC-c----chhhHHHHHHHHhh
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---------NKCPA--CRSC-V----MLRSRVMDIALEKT 74 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---------~~CP~--Cr~~-~----~~rn~~le~~~~~~ 74 (159)
.+.|.||||+++|.+||..-.|||+||..|+.+++ ..||. |+.. + ...|..|.++++..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH 79 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence 56789999999999998753489999999998874 27999 9865 4 56788888888743
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.81 E-value=1.3e-09 Score=71.96 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=39.1
Q ss_pred CCCeeecccccccCCCceeecc-CCceeccccccccC-----CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSI-NGHIICSSCLAKVN-----NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~~-----~~CP~Cr~~~ 60 (159)
..+.+.|+||++++.+|+.. . |||.||..|+.++. ..||.||.++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 45688999999999999874 6 89999999998874 4799999986
No 32
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.81 E-value=4.2e-10 Score=72.96 Aligned_cols=48 Identities=31% Similarity=0.710 Sum_probs=39.7
Q ss_pred eeCCCeeecccccccCCCce------eeccCCceeccccccccC---CCCCCCccCc
Q 042263 13 ISDQDLFDCPIWYQALKVPV------SQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~Pv------~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
....+.+.|+||++.+.+|+ ..-.|||.||..|+.++. ..||.||.++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 45667899999999998872 445789999999998863 6899999987
No 33
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=1.6e-09 Score=86.59 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc----chhhHHHHHHHHh
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV----MLRSRVMDIALEK 73 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~----~~rn~~le~~~~~ 73 (159)
.++.+.||||.++|.+||.. +|||+||..|+.+++ ..||.|+.++ ...|..+.++++.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~ 270 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDA 270 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHH
T ss_pred CCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHH
Confidence 46789999999999999874 689999999998864 2499999998 4568888888773
No 34
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.77 E-value=2.9e-09 Score=68.56 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=39.0
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
..+...|+||++.+.+|+..-+|||.||..|+.++. ..||.||.++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 2 ATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 345678999999999986666889999999998763 6899999987
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.4e-09 Score=69.19 Aligned_cols=41 Identities=37% Similarity=0.777 Sum_probs=35.2
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccC------CCCCCC
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN------NKCPAC 56 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~------~~CP~C 56 (159)
..+.+.|+||++.+.+|+.. .|||+||..|+.++. .+||.|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45688999999999999875 899999999998864 369988
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=3.8e-10 Score=79.38 Aligned_cols=43 Identities=35% Similarity=0.897 Sum_probs=37.4
Q ss_pred CeeecccccccCCCceeeccCCceeccccccccC------CCCCCCccCc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN------NKCPACRSCV 60 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~------~~CP~Cr~~~ 60 (159)
+.+.|+||++.+.+|+. ..|||.||..|+.++. ..||.||.++
T Consensus 20 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 20 KILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 46789999999999976 4899999999998763 2799999998
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=8.8e-10 Score=70.71 Aligned_cols=45 Identities=27% Similarity=0.638 Sum_probs=37.2
Q ss_pred CCeeecccccc-cCCCce---eeccCCceeccccccccC----CCCCCCccCc
Q 042263 16 QDLFDCPIWYQ-ALKVPV---SQSINGHIICSSCLAKVN----NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~-~l~~Pv---~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~ 60 (159)
++.+.||||++ ++..|+ ..-.|||+||..|+.++. ..||.||.++
T Consensus 1 m~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp CCTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 35688999999 898884 234789999999998872 4799999987
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=7.3e-10 Score=71.24 Aligned_cols=50 Identities=30% Similarity=0.684 Sum_probs=40.3
Q ss_pred EEeeCCCeeecccccccCCCce------eeccCCceeccccccccC---CCCCCCccCc
Q 042263 11 STISDQDLFDCPIWYQALKVPV------SQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 11 ~~~~~~~~l~C~iC~~~l~~Pv------~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
......+.+.|+||++.+.+|. ..-.|||.||..|+.++. ..||.||.++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 3345667899999999998762 345789999999998873 5899999986
No 39
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=4.4e-09 Score=68.83 Aligned_cols=53 Identities=26% Similarity=0.490 Sum_probs=45.3
Q ss_pred CCceEEEeeCCCeeecccccccCCCceeeccCCce-eccccccccCCCCCCCccCc
Q 042263 6 NGSITSTISDQDLFDCPIWYQALKVPVSQSINGHI-ICSSCLAKVNNKCPACRSCV 60 (159)
Q Consensus 6 ~~~~~~~~~~~~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~~CP~Cr~~~ 60 (159)
||+-+....+.+...|+||++...++++. +|||. ||..|...+ .+||.||.++
T Consensus 3 ~~s~e~e~~~~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~-~~CP~CR~~i 56 (68)
T 2ea5_A 3 SGSSGVEPSEENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKYF-QQCPMCRQFV 56 (68)
T ss_dssp SSCCCCCCSCCCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHHC-SSCTTTCCCC
T ss_pred CccccccccCCCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhcC-CCCCCCCcch
Confidence 55666666777788999999999998875 78999 999999876 5999999988
No 40
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.71 E-value=2.9e-09 Score=70.44 Aligned_cols=42 Identities=29% Similarity=0.570 Sum_probs=38.2
Q ss_pred CeeecccccccCCCceeeccCCce-eccccccccCCCCCCCccCc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHI-ICSSCLAKVNNKCPACRSCV 60 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~~CP~Cr~~~ 60 (159)
+.+.|+||++.+.+|++. +|||. ||..|+.++ ..||.||.++
T Consensus 23 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i 65 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVI 65 (74)
T ss_dssp HHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC-SBCTTTCCBC
T ss_pred cCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC-ccCCCcCcCc
Confidence 367899999999999876 88999 999999988 6999999988
No 41
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.68 E-value=1.5e-09 Score=68.76 Aligned_cols=44 Identities=34% Similarity=0.786 Sum_probs=36.8
Q ss_pred CeeecccccccCCCce------eeccCCceeccccccccC---CCCCCCccCc
Q 042263 17 DLFDCPIWYQALKVPV------SQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv------~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
+.+.|+||++.+..|. ....|||.||..|+.++. ..||.||.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 4678999999998762 445789999999998863 5899999987
No 42
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=6.4e-09 Score=69.88 Aligned_cols=45 Identities=31% Similarity=0.758 Sum_probs=38.3
Q ss_pred CCCeeecccccccCCC----ceeeccCCceeccccccccC------CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKV----PVSQSINGHIICSSCLAKVN------NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~----Pv~qC~~GH~~C~~C~~~~~------~~CP~Cr~~~ 60 (159)
..+.+.|+||++.+.+ |+.. .|||.||..|+.++. ..||.||.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred ccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 4557899999999998 8654 789999999998872 4799999987
No 43
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.67 E-value=1.2e-08 Score=63.02 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=35.7
Q ss_pred CCeeecccccccCCC---ceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKV---PVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~---Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
.+...|+||++.+.. ++..-.|||.||..|+.++. ..||.||.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 345789999999976 44432389999999998874 5799999875
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.63 E-value=1.4e-08 Score=62.59 Aligned_cols=45 Identities=20% Similarity=0.510 Sum_probs=36.3
Q ss_pred CCeeecccccccCCC---ceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKV---PVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~---Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
.+...|+||++.+.+ ++..-.|||.||..|+.++. ..||.||.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 456789999999865 34445789999999998873 6899999875
No 45
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=4.4e-09 Score=69.59 Aligned_cols=42 Identities=29% Similarity=0.570 Sum_probs=37.3
Q ss_pred CeeecccccccCCCceeeccCCce-eccccccccCCCCCCCccCc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHI-ICSSCLAKVNNKCPACRSCV 60 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~~CP~Cr~~~ 60 (159)
+.+.|+||++.+.+|++. +|||. ||..|+.++ ..||.||.++
T Consensus 24 ~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~-~~CP~Cr~~i 66 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV-DKCPMCYTVI 66 (75)
T ss_dssp HHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHC-SBCTTTCCBC
T ss_pred CCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCC-CCCccCCcee
Confidence 367899999999999874 78999 999999876 5999999987
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.62 E-value=9.5e-09 Score=79.39 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=48.7
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccC----CCCCCCccCc----chhhHHHHHHHH
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN----NKCPACRSCV----MLRSRVMDIALE 72 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~----~~CP~Cr~~~----~~rn~~le~~~~ 72 (159)
-++.|.||||+++|.+||.. ++||+||..|+.++. ..||.|+.++ ...|..+.++++
T Consensus 103 ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie 167 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVID 167 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred CcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHH
Confidence 36789999999999999886 799999999998863 2599999998 456888887776
No 47
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=5.7e-09 Score=64.94 Aligned_cols=41 Identities=32% Similarity=0.609 Sum_probs=34.7
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccC------CCCCCC
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN------NKCPAC 56 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~------~~CP~C 56 (159)
..+.+.|+||++.+.+|+. ..|||+||..|+.++. ..||.|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999999976 4789999999998872 469987
No 48
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.60 E-value=2.1e-08 Score=66.20 Aligned_cols=46 Identities=24% Similarity=0.552 Sum_probs=37.7
Q ss_pred CCCeeecccccccCCCc--eeeccCCceeccccccccC---CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVP--VSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~P--v~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
..+.+.|+||++.+..+ +..-.|||.||..|+.++. ..||.||.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 45578999999999765 3344789999999998863 5799999988
No 49
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.3e-08 Score=66.52 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=38.1
Q ss_pred eCCCeeecccccccCCCc--eeeccCCceeccccccccC---CCCCCCccCc
Q 042263 14 SDQDLFDCPIWYQALKVP--VSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~~P--v~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
...+...|+||++.+..+ +....|||.||..|+.++. ..||.||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 345577899999999865 3344789999999998873 6899999987
No 50
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=5.7e-09 Score=67.62 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=37.7
Q ss_pred eCCCeeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 14 SDQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
...+.+.|+||++.+.+ +. -+|||.||..|+.++. ..||.||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LI-LPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EE-ETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred cCCCCCCCeeCCcCccC-cc-cCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 34567899999999988 44 4789999999998874 5799999987
No 51
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.56 E-value=1.9e-08 Score=64.96 Aligned_cols=47 Identities=23% Similarity=0.447 Sum_probs=37.7
Q ss_pred eCCCeeecccccccCC--CceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 14 SDQDLFDCPIWYQALK--VPVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~--~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
.+.+...|+||++.+. .++....|||.||..|+.++. ..||.||.++
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 3456788999999885 234455789999999998873 6899999987
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.54 E-value=8.5e-09 Score=73.79 Aligned_cols=46 Identities=33% Similarity=0.728 Sum_probs=38.4
Q ss_pred CCCeeecccccccCCCce------eeccCCceeccccccccC---CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPV------SQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv------~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
..+.+.|+||++.+.+|+ ....|||.||..|+.++. ..||.||..+
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBC
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcC
Confidence 457899999999998882 344889999999998873 5899999988
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=2.6e-08 Score=65.45 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=37.3
Q ss_pred CCeeecccccccCCCc--eeeccCCceeccccccccC---CCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKVP--VSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~P--v~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
.+...|+||++.+..+ +..-+|||.||..|+.++. ..||.||.++
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 4578899999999766 3444689999999999873 6899999987
No 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.52 E-value=2e-08 Score=81.83 Aligned_cols=60 Identities=18% Similarity=0.444 Sum_probs=49.5
Q ss_pred eeCCCeeecccccccCCCceeeccCCceeccccccccC-----CCCCC--CccCc----chhhHHHHHHHH
Q 042263 13 ISDQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN-----NKCPA--CRSCV----MLRSRVMDIALE 72 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~-----~~CP~--Cr~~~----~~rn~~le~~~~ 72 (159)
......+.||||+++|++||..-.|||+||..|+.+++ ..||. |+..+ ...|..|.++++
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve 246 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCK 246 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHH
Confidence 44567899999999999999744689999999999875 26999 99987 455788877776
No 55
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.48 E-value=3.1e-08 Score=66.53 Aligned_cols=42 Identities=31% Similarity=0.600 Sum_probs=37.8
Q ss_pred CeeecccccccCCCceeeccCCce-eccccccccCCCCCCCccCc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHI-ICSSCLAKVNNKCPACRSCV 60 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~~CP~Cr~~~ 60 (159)
+...|+||++.+.+|++. +|||. ||..|..++. .||.||.++
T Consensus 17 ~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~~-~CP~Cr~~i 59 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQLQ-SCPVCRSRV 59 (79)
T ss_dssp HHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTCS-BCTTTCCBC
T ss_pred CCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhcC-cCCCCCchh
Confidence 356899999999999886 88999 9999999885 999999998
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=8.9e-08 Score=64.23 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=41.4
Q ss_pred ceEEEeeCCCeeecccccccCCC--------------ceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 8 SITSTISDQDLFDCPIWYQALKV--------------PVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 8 ~~~~~~~~~~~l~C~iC~~~l~~--------------Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
++.+-.-|.+.-.|+||++.+.+ ++....|||.|+..|+.++. ..||.||.++
T Consensus 5 ~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 5 SSGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CCCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred eeEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 34444556778889999999976 33444589999999999874 5799999987
No 57
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.41 E-value=5.9e-08 Score=66.37 Aligned_cols=45 Identities=20% Similarity=0.408 Sum_probs=35.9
Q ss_pred CCeeecccccccCCC--ceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKV--PVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~--Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
.+...|+||++.+.. ++...+|||.||..|+.+|. ..||.||.++
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 356789999998865 23344789999999998873 5799999876
No 58
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.35 E-value=1e-07 Score=67.21 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=37.2
Q ss_pred eeCCCeeecccccccCCCce-----------------eeccCCceeccccccccC--------CCCCCCccCc
Q 042263 13 ISDQDLFDCPIWYQALKVPV-----------------SQSINGHIICSSCLAKVN--------NKCPACRSCV 60 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~Pv-----------------~qC~~GH~~C~~C~~~~~--------~~CP~Cr~~~ 60 (159)
+.+.....|+||++.|..|. ..-.|||.||..|+.++. ..||.||..+
T Consensus 20 ~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 20 LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred ccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 33445569999999997653 134689999999998763 3799999987
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.34 E-value=8.8e-08 Score=68.42 Aligned_cols=52 Identities=27% Similarity=0.618 Sum_probs=42.2
Q ss_pred eEEEeeCCCeeecccccccCCCc------eeeccCCceeccccccccC---CCCCCCccCc
Q 042263 9 ITSTISDQDLFDCPIWYQALKVP------VSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 9 ~~~~~~~~~~l~C~iC~~~l~~P------v~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
+.....+.+.+.|+||++.+..| +....|||.||..|+.++. ..||.||.++
T Consensus 63 l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 63 YHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp EEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred ccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 33345577889999999999876 2456889999999998873 6899999987
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.32 E-value=8.6e-08 Score=61.70 Aligned_cols=48 Identities=25% Similarity=0.529 Sum_probs=38.9
Q ss_pred eeCCCeeecccccccCCCceee-ccCCce-eccccccccC---CCCCCCccCc
Q 042263 13 ISDQDLFDCPIWYQALKVPVSQ-SINGHI-ICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~Pv~q-C~~GH~-~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
+...+...|+||++...++++. -+|||. +|..|..++. ..||.||.++
T Consensus 3 l~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 3 LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp --CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CCCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 4456677899999999998763 367999 8999998874 4699999987
No 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.27 E-value=4.2e-07 Score=76.50 Aligned_cols=42 Identities=26% Similarity=0.638 Sum_probs=38.4
Q ss_pred CeeecccccccCCCceeeccCCce-eccccccccCCCCCCCccCc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHI-ICSSCLAKVNNKCPACRSCV 60 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~-~C~~C~~~~~~~CP~Cr~~~ 60 (159)
+.+.|+||++.+.+|++. +|||. ||..|+.++ ..||.||.++
T Consensus 294 ~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~-~~CP~CR~~i 336 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL-RKCPICRGII 336 (345)
T ss_dssp TTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC-SBCTTTCCBC
T ss_pred CCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC-CcCCCCCCCc
Confidence 457899999999999886 88999 999999988 5999999988
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.16 E-value=2.9e-07 Score=63.06 Aligned_cols=44 Identities=20% Similarity=0.420 Sum_probs=35.5
Q ss_pred CCeeecccccccCCCceee--ccCCceeccccccccC-----------CCCCC--CccC
Q 042263 16 QDLFDCPIWYQALKVPVSQ--SINGHIICSSCLAKVN-----------NKCPA--CRSC 59 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~q--C~~GH~~C~~C~~~~~-----------~~CP~--Cr~~ 59 (159)
.+.++|+||++.+..|... -.|||.||..|+...+ -.||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999999999888543 2589999999987642 26999 9998
No 63
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.15 E-value=5.9e-07 Score=76.75 Aligned_cols=42 Identities=31% Similarity=0.609 Sum_probs=36.7
Q ss_pred eeecccccccCCCceeeccCCceecccccccc----CCCCCCCccCc
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLAKV----NNKCPACRSCV 60 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~~CP~Cr~~~ 60 (159)
...|+||.+.+.+|+.. +|||.||..|+..+ ...||.||.++
T Consensus 332 ~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 47899999999999764 88999999999875 25899999987
No 64
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.10 E-value=4.7e-07 Score=58.01 Aligned_cols=44 Identities=20% Similarity=0.533 Sum_probs=36.6
Q ss_pred CeeecccccccCCCcee-eccCCce-eccccccccC---CCCCCCccCc
Q 042263 17 DLFDCPIWYQALKVPVS-QSINGHI-ICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
....|+||++..+++++ .-+|||. +|..|..++. .+||.||.++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 35579999999998864 3477998 9999998874 4899999987
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.95 E-value=4.1e-06 Score=59.20 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=37.8
Q ss_pred CCCeeecccccccCCCc-----------------eeeccCCceeccccccccC---CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVP-----------------VSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~P-----------------v~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
|.+.-.|+||++.+..+ +..-.|||.|+..|+.++. ..||.||.++
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 56677899999999765 3445789999999999873 6799999986
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.73 E-value=8.6e-06 Score=58.66 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=2.8
Q ss_pred eCCCeeecccccccCCCc-----------------eeeccCCceeccccccccC---CCCCCCccCc
Q 042263 14 SDQDLFDCPIWYQALKVP-----------------VSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~~P-----------------v~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
-|.+.-.|+||++.+..| +...+|||.|+..|+.++. ..||.||.++
T Consensus 44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ECCCC--------------------------------------------------------------
T ss_pred ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 355667899999999764 2223689999999999874 5799999986
No 67
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=97.67 E-value=1e-05 Score=53.07 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=23.7
Q ss_pred CchhhhccCCCCCCCCCCCCCcceeChhHHHhHhhhhcCCc
Q 042263 79 ENKDHERNCQCAPCACPLLDCNFLGSASQLYLYFSWKNGKT 119 (159)
Q Consensus 79 ~~~~He~~C~~~p~~Cp~~gC~~~g~~~~l~~H~~~~H~~~ 119 (159)
++..|+..|+|+++.||. +|+....+.+|.+|+...-+.+
T Consensus 4 ~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r 43 (76)
T 2yuc_A 4 GSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKR 43 (76)
T ss_dssp SCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCTTS
T ss_pred HHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCCCc
Confidence 455666666666666654 5666666666666665444443
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.61 E-value=1.5e-05 Score=50.79 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=36.9
Q ss_pred eeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
.+.|||++++|.+||..-.+||+|+..|+.++. .+||..+.++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L 48 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 48 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCC
Confidence 477999999999997643689999999999974 5799999987
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.32 E-value=4.3e-05 Score=53.55 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=57.1
Q ss_pred ecccccccCCCceeeccCCceecccccccc----CCCCCCCccCc-chhhHHHHHHHHhhccCCCchhhhccCCCCCCCC
Q 042263 20 DCPIWYQALKVPVSQSINGHIICSSCLAKV----NNKCPACRSCV-MLRSRVMDIALEKTMSFGENKDHERNCQCAPCAC 94 (159)
Q Consensus 20 ~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~----~~~CP~Cr~~~-~~rn~~le~~~~~~~~~~~~~~He~~C~~~p~~C 94 (159)
-|++|..++..=...=+|.|.||..|...+ .+.||.|+.++ ......++. ..-|
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~~---------------------if~C 61 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGS---------------------LFMC 61 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGGG---------------------CCCC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccCC---------------------EEEC
Confidence 489999888653333367999999999764 25799999988 222211111 4578
Q ss_pred C-CCCCcce-eChhHHHhHhhhhcCCce
Q 042263 95 P-LLDCNFL-GSASQLYLYFSWKNGKTF 120 (159)
Q Consensus 95 p-~~gC~~~-g~~~~l~~H~~~~H~~~~ 120 (159)
+ ..||.-+ .+.++|..|....|....
T Consensus 62 ~~~~~CkrtyLs~rdlqaHI~~~H~~~~ 89 (101)
T 3vk6_A 62 SIVQGCKRTYLSQRDLQAHINHRHMRAG 89 (101)
T ss_dssp CCCCCCCCCCSSHHHHHHHHHHHTTTSC
T ss_pred CCCCCHHHHhcCHHHHHHHHHHHhhhcC
Confidence 8 6799765 556899999999998654
No 70
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.00025 Score=49.64 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=35.6
Q ss_pred ccCCCchhhhccCCCCCCCCCCC--CCcceeChhHHHhHhhhh
Q 042263 75 MSFGENKDHERNCQCAPCACPLL--DCNFLGSASQLYLYFSWK 115 (159)
Q Consensus 75 ~~~~~~~~He~~C~~~p~~Cp~~--gC~~~g~~~~l~~H~~~~ 115 (159)
+...++++|...|+.+.+.|++. ||.+++.+.+|.+|++..
T Consensus 48 i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~C 90 (100)
T 2yre_A 48 FHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMC 90 (100)
T ss_dssp EEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHTC
T ss_pred eehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhhC
Confidence 34446679999999999999987 999999999999999853
No 71
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=96.76 E-value=0.00085 Score=43.66 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=34.0
Q ss_pred ccCCCchhhhc-cCCCCCCCCCCCCCcceeChhHHHhHhhh
Q 042263 75 MSFGENKDHER-NCQCAPCACPLLDCNFLGSASQLYLYFSW 114 (159)
Q Consensus 75 ~~~~~~~~He~-~C~~~p~~Cp~~gC~~~g~~~~l~~H~~~ 114 (159)
+...++++|++ .|+++++.|++ |++...+.+|..|...
T Consensus 27 v~r~~l~~H~~~~C~~r~v~C~~--C~~~~~~~~l~~H~~~ 65 (76)
T 2yuc_A 27 LSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHEGM 65 (76)
T ss_dssp CCSSSSTTTTTTSCTTSCCCCSS--SCCCCCHHHHHHTTTS
T ss_pred hhHhHHHhhCHhhCCCcceECCC--CCCccCHHHHHHHHhH
Confidence 66678889998 89999999998 9999999999999853
No 72
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.70 E-value=0.00082 Score=44.87 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=38.4
Q ss_pred ccCCCceEEEeeCCCeeecccccccCC--Ccee-eccC---CceeccccccccC-----CCCCCCccCc
Q 042263 3 SCKNGSITSTISDQDLFDCPIWYQALK--VPVS-QSIN---GHIICSSCLAKVN-----NKCPACRSCV 60 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~C~iC~~~l~--~Pv~-qC~~---GH~~C~~C~~~~~-----~~CP~Cr~~~ 60 (159)
+.|.+..+ ..+.+...|.||++-+. .++. .|.| +|.|-..|+.+|. ..||+||..+
T Consensus 2 ~~~~s~~s--~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 2 SSGSSGTS--ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp CCCCCCCC--CCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CcccCCCC--CCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 34443333 34455668999997663 4543 3433 4999999999984 3799999987
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.29 E-value=0.0011 Score=55.90 Aligned_cols=45 Identities=18% Similarity=0.376 Sum_probs=37.5
Q ss_pred CCeeecccccccCCC----ceeec---cCCceeccccccccC--------------CCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKV----PVSQS---INGHIICSSCLAKVN--------------NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~----Pv~qC---~~GH~~C~~C~~~~~--------------~~CP~Cr~~~ 60 (159)
...-+|+||+..+.+ |...| +|||.|=+.|+.+|. +.||.||.++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 457789999999876 76667 489999999998862 4699999988
No 74
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.92 E-value=0.0034 Score=41.39 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=38.1
Q ss_pred EeeCCCeeecccccccCCCceeec-cCCceeccccccccC-----CCCCCCccCc
Q 042263 12 TISDQDLFDCPIWYQALKVPVSQS-INGHIICSSCLAKVN-----NKCPACRSCV 60 (159)
Q Consensus 12 ~~~~~~~l~C~iC~~~l~~Pv~qC-~~GH~~C~~C~~~~~-----~~CP~Cr~~~ 60 (159)
..-....-.|.||++++.+ -..| .|||.|=..|+.++. .+||.|+.++
T Consensus 9 ~~y~~~i~~C~IC~~~i~~-g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 9 ETYPDAVKICNICHSLLIQ-GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp CCCSSSSCBCSSSCCBCSS-SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred hhccCCCCcCcchhhHccc-CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 3445567889999999974 4567 589999999998763 4799999986
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.84 E-value=0.0023 Score=43.69 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=27.1
Q ss_pred Ceeecccccc-cCCCceeecc-CCceeccccccc
Q 042263 17 DLFDCPIWYQ-ALKVPVSQSI-NGHIICSSCLAK 48 (159)
Q Consensus 17 ~~l~C~iC~~-~l~~Pv~qC~-~GH~~C~~C~~~ 48 (159)
+.+.|+||.+ ++.+|+..|. |||.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 5678999996 5788888764 899999999987
No 76
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.59 E-value=0.0023 Score=41.48 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=22.7
Q ss_pred CchhhhccCCCCCCCCCCCCCcceeChhHHHhHhhh
Q 042263 79 ENKDHERNCQCAPCACPLLDCNFLGSASQLYLYFSW 114 (159)
Q Consensus 79 ~~~~He~~C~~~p~~Cp~~gC~~~g~~~~l~~H~~~ 114 (159)
++..|+..|+.+|+.|+. |+....+.+|..|...
T Consensus 31 ~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H~~~ 64 (75)
T 2d9k_A 31 KLKEHEDYCGARTELCGN--CGRNVLVKDLKTHPEV 64 (75)
T ss_dssp HHHHHHHHHHHCEEECSS--SCCEEETTGGGTHHHH
T ss_pred HHHHHHhHcCCCceEccc--CCCcCcHHHHHHHHHH
Confidence 445677667777777765 7766666777777654
No 77
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.28 E-value=0.023 Score=36.62 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=29.9
Q ss_pred CCchhhhc-cCCCCCCCCCCCCCcceeChhHHHhHh
Q 042263 78 GENKDHER-NCQCAPCACPLLDCNFLGSASQLYLYF 112 (159)
Q Consensus 78 ~~~~~He~-~C~~~p~~Cp~~gC~~~g~~~~l~~H~ 112 (159)
.+|..|+. .|+++|+.|++ |+......+|..|.
T Consensus 3 ~~L~~H~~~~c~~r~~~C~~--C~~~~~~~~L~~H~ 36 (75)
T 2d9k_A 3 SGSSGHEETECPLRLAVCQH--CDLELSILKLKEHE 36 (75)
T ss_dssp CCCSCCCCCCCCCCCEECSS--SCCEECHHHHHHHH
T ss_pred hHHHhhCcccCCCcccCCcc--cChHhhHHHHHHHH
Confidence 46789986 79999999987 99999999999998
No 78
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=92.14 E-value=0.046 Score=40.44 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=34.6
Q ss_pred hccCCCchhhh-ccCCCCCCCCCCCCCcceeChhHHHhHhhhh
Q 042263 74 TMSFGENKDHE-RNCQCAPCACPLLDCNFLGSASQLYLYFSWK 115 (159)
Q Consensus 74 ~~~~~~~~~He-~~C~~~p~~Cp~~gC~~~g~~~~l~~H~~~~ 115 (159)
.+...++..|+ ..|+++++.|++ |++.....+|..|....
T Consensus 119 ~~~r~~l~~H~~~~C~~r~~~C~~--C~~~~~~~~l~~H~~~~ 159 (170)
T 3hcs_A 119 PFQKFHINIHILKDCPRRQVSCDN--CAASMAFEDKEIHDQNC 159 (170)
T ss_dssp EEEGGGHHHHHHHTCTTCEEECTT--TCCEEEGGGHHHHHTTC
T ss_pred HHHHHHHHHHhhhhCCCCCeECCC--CCCccCHHHHHhHHHhC
Confidence 35666788998 699999999995 99999999999998654
No 79
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=90.87 E-value=0.1 Score=34.98 Aligned_cols=45 Identities=20% Similarity=0.548 Sum_probs=37.0
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC-CCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN-NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~-~~CP~Cr~~~ 60 (159)
.+-|.|..|...|....+.-..|..+|..|..++. .+|..|..+|
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I 76 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAI 76 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCcc
Confidence 45689999999997655555789999999998764 6899999887
No 80
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=89.61 E-value=0.11 Score=36.02 Aligned_cols=37 Identities=32% Similarity=0.714 Sum_probs=29.1
Q ss_pred eecccccccCCCceeeccCCceeccccccccC--CCCCCCccCc
Q 042263 19 FDCPIWYQALKVPVSQSINGHIICSSCLAKVN--NKCPACRSCV 60 (159)
Q Consensus 19 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~--~~CP~Cr~~~ 60 (159)
..||+|...|.. ..|+..|..|-.... +.||.|.+++
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHH
Confidence 789999977642 346677999988754 6799999987
No 81
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=88.23 E-value=0.37 Score=30.81 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=33.3
Q ss_pred eCCCeeecccccccCCCceeeccCCceeccccccccCCCCCCCcc
Q 042263 14 SDQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVNNKCPACRS 58 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~Cr~ 58 (159)
.-...-.|..|..-+.-+.++|.||..||+.=...-...|+.-..
T Consensus 11 ~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk 55 (64)
T 1wg2_A 11 PVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFK 55 (64)
T ss_dssp CSCCSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCS
T ss_pred CCCcCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchh
Confidence 334456899999977655689999999999887665556765433
No 82
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=87.04 E-value=0.27 Score=34.31 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=37.2
Q ss_pred CCeeecccccccCCCceeeccCCceecccccccc-CCCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKV-NNKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~Cr~~~ 60 (159)
.+-|.|..|...|...-+.-..|..+|..|..+. ..+|..|..+|
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I 73 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAI 73 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBC
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcC
Confidence 4568999999999875454578999999998875 36899999988
No 83
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=86.30 E-value=0.57 Score=29.89 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=31.5
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccCCCCCCC
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVNNKCPAC 56 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C 56 (159)
...-.|..|.+-+.-+.++|.||..||+.=...-...|+.-
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fD 53 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFD 53 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCC
T ss_pred CcCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCch
Confidence 34578999998766556899999999999876655567654
No 84
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=86.28 E-value=0.45 Score=31.55 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=25.1
Q ss_pred CCCeeecccccccCC----Cceeecc-CCceecccccccc
Q 042263 15 DQDLFDCPIWYQALK----VPVSQSI-NGHIICSSCLAKV 49 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~----~Pv~qC~-~GH~~C~~C~~~~ 49 (159)
+++..-||-|..++. .+..+|+ ||+.||..|...+
T Consensus 22 ~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 22 DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 333444999988653 2235796 9999999998877
No 85
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=84.05 E-value=0.31 Score=30.30 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=30.8
Q ss_pred CCCeeecccccccCCCce-eeccCCc---eeccccccccC-----CCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPV-SQSINGH---IICSSCLAKVN-----NKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv-~qC~~GH---~~C~~C~~~~~-----~~CP~Cr~~~ 60 (159)
+.+.-.|.||++-..+|+ ..|.|.+ .|=..|+.++. ..||+|+.++
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 445668999987655553 3465544 45556777762 5799999876
No 86
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=83.81 E-value=0.44 Score=31.84 Aligned_cols=37 Identities=27% Similarity=0.696 Sum_probs=26.6
Q ss_pred eecccccccCCCceeeccCCceeccccccccC--CCCCCCccCc
Q 042263 19 FDCPIWYQALKVPVSQSINGHIICSSCLAKVN--NKCPACRSCV 60 (159)
Q Consensus 19 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~--~~CP~Cr~~~ 60 (159)
..||.|...|.. ..++..|..|-..+. +.||.|..++
T Consensus 3 ~~CP~C~~~l~~-----~~~~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALER-----NGDTAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEE-----CSSEEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCCcccc-----CCCceECccccccCCCcccCcchhhHH
Confidence 679999977642 335566888877653 5799888876
No 87
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=83.75 E-value=0.71 Score=30.51 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=27.9
Q ss_pred eeCCCeeecccccccCCCc--eeecc-CCceeccccccc
Q 042263 13 ISDQDLFDCPIWYQALKVP--VSQSI-NGHIICSSCLAK 48 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 48 (159)
+.|.+.-.|.+|...|..- -..|. ||.+||+.|...
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4567788999999987532 35686 799999999765
No 88
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=83.65 E-value=0.77 Score=30.19 Aligned_cols=36 Identities=19% Similarity=0.540 Sum_probs=27.0
Q ss_pred eeCCCeeecccccccCCCc--eeecc-CCceeccccccc
Q 042263 13 ISDQDLFDCPIWYQALKVP--VSQSI-NGHIICSSCLAK 48 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 48 (159)
+.|.+.-.|.+|...|..- -..|. ||.+||+.|...
T Consensus 14 ~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp -CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3466777899999887532 24686 799999999865
No 89
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=83.59 E-value=0.48 Score=29.70 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=29.0
Q ss_pred ecccccccCCCc-eeecc-CCceecccccccc---CCCCCCC
Q 042263 20 DCPIWYQALKVP-VSQSI-NGHIICSSCLAKV---NNKCPAC 56 (159)
Q Consensus 20 ~C~iC~~~l~~P-v~qC~-~GH~~C~~C~~~~---~~~CP~C 56 (159)
.|-.|...+.+. +|+|+ |++.||-.|-.=+ ...||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 489999988655 48997 7999999995432 3689988
No 90
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.68 E-value=0.33 Score=30.36 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=28.2
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccCCCCCCC
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVNNKCPAC 56 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C 56 (159)
.+-|.|..|...|....+.-..|..+|..|..++..+|+.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~~~~~ 71 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLESGPSS 71 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHTCSSC
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHccCCCC
Confidence 34578888888886544544678888888887765566543
No 91
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.46 E-value=0.32 Score=32.66 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=29.3
Q ss_pred eeCCCeeecccccccCCCc-eeecc--CCceeccccccc
Q 042263 13 ISDQDLFDCPIWYQALKVP-VSQSI--NGHIICSSCLAK 48 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~P-v~qC~--~GH~~C~~C~~~ 48 (159)
..+...|.|.+|.+-|.+- ..||+ .+|.||-.|...
T Consensus 10 ~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 10 MANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp SCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CCCCCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 3467789999999999886 34897 599999999654
No 92
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=82.46 E-value=0.57 Score=33.42 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=26.5
Q ss_pred eCCCeeecccccccCCCc--eeecc-CCceeccccccc
Q 042263 14 SDQDLFDCPIWYQALKVP--VSQSI-NGHIICSSCLAK 48 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 48 (159)
.|.+.-.|.+|...|..- -..|. ||.+||+.|...
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 355567899999987532 25686 899999999765
No 93
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=82.45 E-value=0.82 Score=29.95 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCCeeeccc--ccccCC----Cceeec------cCCceeccccccccCCCCCCCcc
Q 042263 15 DQDLFDCPI--WYQALK----VPVSQS------INGHIICSSCLAKVNNKCPACRS 58 (159)
Q Consensus 15 ~~~~l~C~i--C~~~l~----~Pv~qC------~~GH~~C~~C~~~~~~~CP~Cr~ 58 (159)
+.+..-||. |..++. .+..+| .||+.||..|...+.. -.|..
T Consensus 22 ~~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~~ 75 (80)
T 2jmo_A 22 QMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECSA 75 (80)
T ss_dssp CCSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSSS
T ss_pred hCCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccccc
Confidence 344667998 988774 234579 6999999999998763 55654
No 94
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=82.16 E-value=0.78 Score=29.00 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=34.5
Q ss_pred CCeeecccccccCCCceeeccCCceecc-ccccccC-CCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICS-SCLAKVN-NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~-~C~~~~~-~~CP~Cr~~~ 60 (159)
.+-|.|..|...|..-.+.-..|..+|. .|..+.. .+|..|....
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 4568999999999764344478999999 6987753 6898887654
No 95
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.10 E-value=0.91 Score=29.93 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=27.2
Q ss_pred eeCCCeeecccccccCCCc--eeecc-CCceeccccccc
Q 042263 13 ISDQDLFDCPIWYQALKVP--VSQSI-NGHIICSSCLAK 48 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 48 (159)
+-|.+.-.|.+|...|..- -..|. ||.+||+.|...
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3466777899999887432 24686 799999999764
No 96
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.09 E-value=1.2 Score=26.69 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=16.2
Q ss_pred ccCCCCCCCCCCCCCcceeChhHHHhHhhh
Q 042263 85 RNCQCAPCACPLLDCNFLGSASQLYLYFSW 114 (159)
Q Consensus 85 ~~C~~~p~~Cp~~gC~~~g~~~~l~~H~~~ 114 (159)
+.|+.+|+.|+. |+.......|..|...
T Consensus 4 ~~C~~~~~~C~~--C~k~f~~~~L~~H~~~ 31 (66)
T 2eod_A 4 GSSGKRTQPCTY--CTKEFVFDTIQSHQYQ 31 (66)
T ss_dssp SCCCCCEEECSS--SCCEEEHHHHHHHHHH
T ss_pred ccCCCCCeeccc--cCCccCHHHHHHHHHH
Confidence 356666666654 6554445556666654
No 97
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=79.02 E-value=1 Score=35.50 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=34.6
Q ss_pred CeeecccccccCCCceeecc-CCceeccccccccC-----CCCCCCccCc
Q 042263 17 DLFDCPIWYQALKVPVSQSI-NGHIICSSCLAKVN-----NKCPACRSCV 60 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~~-----~~CP~Cr~~~ 60 (159)
....|.+|.++... -..|. |++.|=..|..++. ..||.|+.++
T Consensus 179 ~i~~C~iC~~iv~~-g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQ-GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSS-CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhC-CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 57889999999985 46786 78888888887752 4899999876
No 98
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.71 E-value=2 Score=27.02 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=30.3
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC-CCCCCC
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN-NKCPAC 56 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~-~~CP~C 56 (159)
.+-|.|..|...|....+.-..|..+|..|..+.. ..|..+
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~ 74 (76)
T 1x68_A 33 SECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPS 74 (76)
T ss_dssp GGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSS
T ss_pred cccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCC
Confidence 34589999999997654555789999999988753 455443
No 99
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=77.09 E-value=2.4 Score=27.73 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=31.4
Q ss_pred eeecccccccCCCceeeccCCceeccccccccCCCCCCCcc
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLAKVNNKCPACRS 58 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~Cr~ 58 (159)
.-.|..|.+-+.-+.++|.||..||+.=...-...|+.-..
T Consensus 25 ~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFK 65 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTT
T ss_pred CccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchh
Confidence 56899999777665689999999999887665556765433
No 100
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=76.39 E-value=1.4 Score=29.48 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=26.7
Q ss_pred eCCCeeecccccccCCC--ceeecc-CCceecccccccc
Q 042263 14 SDQDLFDCPIWYQALKV--PVSQSI-NGHIICSSCLAKV 49 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~~--Pv~qC~-~GH~~C~~C~~~~ 49 (159)
.|.+.-.|.+|...|.. --..|. ||.+||+.|....
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45566789999987752 235676 7999999998753
No 101
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.34 E-value=1.1 Score=27.01 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=26.5
Q ss_pred chhhhccCCCCCCCCCCCCCccee-ChhHHHhHhhhhcCC
Q 042263 80 NKDHERNCQCAPCACPLLDCNFLG-SASQLYLYFSWKNGK 118 (159)
Q Consensus 80 ~~~He~~C~~~p~~Cp~~gC~~~g-~~~~l~~H~~~~H~~ 118 (159)
+..|+..+..+|+.|++ .|+... ...+|..|.....+.
T Consensus 25 L~~H~~~~~~~p~~C~~-~C~k~f~~~~~L~~H~~~hc~~ 63 (66)
T 2eod_A 25 IQSHQYQCPRLPVACPN-QCGVGTVAREDLPGHLKDSCNT 63 (66)
T ss_dssp HHHHHHHCSSSEEECTT-CCSCCEEETTTHHHHHHTTSSS
T ss_pred HHHHHHHcCCcCccCCc-ccCcccccHHHHHHHHHhhccc
Confidence 44676666778999982 498764 456899998765444
No 102
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.06 E-value=2.4 Score=29.34 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=17.5
Q ss_pred hccCCCchhhhccCCCCCCCCC
Q 042263 74 TMSFGENKDHERNCQCAPCACP 95 (159)
Q Consensus 74 ~~~~~~~~~He~~C~~~p~~Cp 95 (159)
++.-.++.+|++.|+-+.+.|.
T Consensus 77 ~~~R~~L~~He~~CPas~v~~~ 98 (100)
T 2yre_A 77 TMARNKVAEHLEMCPASVSGPS 98 (100)
T ss_dssp EEESSTHHHHHHTCGGGCCCCC
T ss_pred eecHHHHHHHHhhCCceeEecC
Confidence 4455689999999998888775
No 103
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=74.65 E-value=0.92 Score=31.62 Aligned_cols=45 Identities=16% Similarity=0.298 Sum_probs=35.9
Q ss_pred CCeeecccccccCCC--ceeeccCCceeccccccccC-C--CCCCCccCc
Q 042263 16 QDLFDCPIWYQALKV--PVSQSINGHIICSSCLAKVN-N--KCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~--Pv~qC~~GH~~C~~C~~~~~-~--~CP~Cr~~~ 60 (159)
++-|.|..|...|.. ..+.-..|..+|..|..+.. . +|..|..+|
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEE
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCcc
Confidence 567899999999953 33444789999999988764 3 799999987
No 104
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=74.22 E-value=1.3 Score=32.83 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=33.2
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC-CCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN-NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~-~~CP~Cr~~~ 60 (159)
.+-|.|..|...|....| -..|..+|..|..+.. .+|..|..+|
T Consensus 85 ~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I 129 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGI 129 (182)
T ss_dssp SSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCC
T ss_pred cccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCcc
Confidence 456788888888876444 3678899999987653 6899998877
No 105
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=73.84 E-value=2.4 Score=26.83 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=46.8
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccCCCCCCCccCc-chhhHHHHHHHHhhccCCCchhhhccCC---CCC
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVNNKCPACRSCV-MLRSRVMDIALEKTMSFGENKDHERNCQ---CAP 91 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~Cr~~~-~~rn~~le~~~~~~~~~~~~~~He~~C~---~~p 91 (159)
...+.|++|...+...... .-|.-= =...-...|+.|...+ .... |. .|+..-. -.+
T Consensus 5 ~~~~~C~~C~~~f~~~~~l--~~H~~~--h~~~~~~~C~~C~~~f~~~~~--l~-------------~H~~~h~~~~~~~ 65 (95)
T 2yt9_A 5 SSGVACEICGKIFRDVYHL--NRHKLS--HSGEKPYSCPVCGLRFKRKDR--MS-------------YHVRSHDGSVGKP 65 (95)
T ss_dssp CSCEECSSSCCEESSSHHH--HHHHHH--SCSSCSEECSSSCCEESCHHH--HH-------------HHHHHHCCCCCSS
T ss_pred CCCeECCCCCCccCChHHH--HHHHHh--cCCCCCCcCCCCCCccCCHHH--HH-------------HHHHHhcCCCCCc
Confidence 4568899999888664211 123210 0001113699998776 2222 11 1211111 257
Q ss_pred CCCCCCCCcceeC-hhHHHhHhhhhcCCc
Q 042263 92 CACPLLDCNFLGS-ASQLYLYFSWKNGKT 119 (159)
Q Consensus 92 ~~Cp~~gC~~~g~-~~~l~~H~~~~H~~~ 119 (159)
+.|+. |+.... ...|..|+...|...
T Consensus 66 ~~C~~--C~~~f~~~~~L~~H~~~~H~~~ 92 (95)
T 2yt9_A 66 YICQS--CGKGFSRPDHLNGHIKQVHSGP 92 (95)
T ss_dssp BCCSS--SCCCBSSHHHHHHHHHHTSCCC
T ss_pred eECCC--ccchhCCHHHHHHHHHHhcCCC
Confidence 88986 988755 468999999888754
No 106
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=73.23 E-value=1.2 Score=30.69 Aligned_cols=41 Identities=27% Similarity=0.581 Sum_probs=32.8
Q ss_pred eeecccccccCCCceeeccCCceeccccccccC---CCCCCCccCc
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLAKVN---NKCPACRSCV 60 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~---~~CP~Cr~~~ 60 (159)
-+.|-.|....+. ...| +.|..|..|+..+. ..||+|..++
T Consensus 28 ~~nCKsCWf~~k~-LV~C-~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 28 PQFCKSCWFENKG-LVEC-NNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CCCCCSSCSCCSS-EEEC-SSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred cccChhhccccCC-eeee-cchhhHHHHHHHHHhhccCCcccCCcC
Confidence 6789989877776 3444 58999999998874 5799999987
No 107
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=72.84 E-value=1.6 Score=31.09 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=27.6
Q ss_pred CCceEEEe-eCCCeeecccccccCCCc--eeecc-CCceeccccccccC---CCCCCCcc
Q 042263 6 NGSITSTI-SDQDLFDCPIWYQALKVP--VSQSI-NGHIICSSCLAKVN---NKCPACRS 58 (159)
Q Consensus 6 ~~~~~~~~-~~~~~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~~~---~~CP~Cr~ 58 (159)
|+.+++-- -|.+...|..|...|..- -..|. ||.+||+.|..... ..|-.|..
T Consensus 6 ~~~~~~~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 6 NPGYSSFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --------------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred CCCcccCCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 44444322 355667899999987532 24676 79999999987632 33555533
No 108
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=72.84 E-value=3.5 Score=34.07 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=34.3
Q ss_pred eEEEeeCCCeeecccccccCCC---ceeecc-CCceeccccccccCCCCC
Q 042263 9 ITSTISDQDLFDCPIWYQALKV---PVSQSI-NGHIICSSCLAKVNNKCP 54 (159)
Q Consensus 9 ~~~~~~~~~~l~C~iC~~~l~~---Pv~qC~-~GH~~C~~C~~~~~~~CP 54 (159)
-.....+...-.|..|...+.. .-++|. ||..+|..|..++. .|+
T Consensus 348 ~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~C~ 396 (406)
T 2vrw_B 348 DFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-PCG 396 (406)
T ss_dssp CEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-CC-
T ss_pred CCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-CCC
Confidence 3445667778889999998863 456787 89999999999875 353
No 109
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.33 E-value=2.1 Score=27.33 Aligned_cols=29 Identities=14% Similarity=0.317 Sum_probs=22.5
Q ss_pred ecccccccCCCc--eeecc-CCceeccccccc
Q 042263 20 DCPIWYQALKVP--VSQSI-NGHIICSSCLAK 48 (159)
Q Consensus 20 ~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 48 (159)
.|.+|...|..- -..|. ||.+||+.|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 799999887532 25686 899999999764
No 110
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=72.30 E-value=3.1 Score=27.21 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=29.1
Q ss_pred eeecccccccCCCceeeccCCceeccccccccCCCCCCC
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLAKVNNKCPAC 56 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C 56 (159)
.-.|..|..-+.-..+.|.||..||+.=...-...|+.-
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fD 63 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYD 63 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCC
T ss_pred CCcChhhCCcccccCeecCCCCEechhcCCCccCCCcch
Confidence 457999988654334899999999998776655567644
No 111
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=72.20 E-value=0.63 Score=34.90 Aligned_cols=45 Identities=22% Similarity=0.453 Sum_probs=35.7
Q ss_pred CCeeecccccccCCC--ceeeccCCceeccccccccC-C--CCCCCccCc
Q 042263 16 QDLFDCPIWYQALKV--PVSQSINGHIICSSCLAKVN-N--KCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~--Pv~qC~~GH~~C~~C~~~~~-~--~CP~Cr~~~ 60 (159)
.+-|.|..|...|.. ..+.-..|..+|..|..+.. . +|..|..+|
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSI 79 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEE
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcc
Confidence 456899999999874 33444789999999988764 3 599999987
No 112
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=71.63 E-value=2.8 Score=23.26 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.2
Q ss_pred CCCCCCCCcce-eChhHHHhHhhhhcCC
Q 042263 92 CACPLLDCNFL-GSASQLYLYFSWKNGK 118 (159)
Q Consensus 92 ~~Cp~~gC~~~-g~~~~l~~H~~~~H~~ 118 (159)
..||. |... +...+|..|++..|..
T Consensus 6 FiCP~--C~~~l~s~~~L~~Hye~~H~~ 31 (34)
T 3mjh_B 6 FICPQ--CMKSLGSADELFKHYEAVHDA 31 (34)
T ss_dssp EECTT--TCCEESSHHHHHHHHHHHTSS
T ss_pred cCCcH--HHHHcCCHHHHHHHHHhcccc
Confidence 56887 8654 6678999999999975
No 113
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=70.57 E-value=3.5 Score=27.65 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=30.0
Q ss_pred eeecccccccCCC-ceeeccCCceeccccccccCCCCCCCcc
Q 042263 18 LFDCPIWYQALKV-PVSQSINGHIICSSCLAKVNNKCPACRS 58 (159)
Q Consensus 18 ~l~C~iC~~~l~~-Pv~qC~~GH~~C~~C~~~~~~~CP~Cr~ 58 (159)
.-.|..|..-+.- .-++|.||..||+.=...-...|+.--.
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK 66 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYK 66 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCS
T ss_pred CccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhh
Confidence 4689999976543 1388999999999987665557876433
No 114
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=69.74 E-value=1.7 Score=31.86 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=36.0
Q ss_pred CCeeecccccccCCCceeeccCCceecccccccc-CCCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKV-NNKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~Cr~~~ 60 (159)
.+-|.|..|...|....+ -..|..+|..|..+. ..+|..|..+|
T Consensus 31 ~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I 75 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGI 75 (169)
T ss_dssp TTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBC
T ss_pred cccCccCCCCCcCCCCCc-ccCCeeeeccccccccccccccccccc
Confidence 456899999999976545 478999999998765 46899999887
No 115
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=69.26 E-value=0.97 Score=31.45 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=34.7
Q ss_pred CeeecccccccCCC--ceeeccCCceeccccccccC-C--CCCCCccCc
Q 042263 17 DLFDCPIWYQALKV--PVSQSINGHIICSSCLAKVN-N--KCPACRSCV 60 (159)
Q Consensus 17 ~~l~C~iC~~~l~~--Pv~qC~~GH~~C~~C~~~~~-~--~CP~Cr~~~ 60 (159)
+-|.|..|...|.+ ..+.-..|..+|..|..+.. . +|..|..+|
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I 79 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMG 79 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCS
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCc
Confidence 45889999999963 23444789999999987753 4 899999988
No 116
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=68.95 E-value=3.1 Score=27.70 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=24.7
Q ss_pred CCeeecccccccCCCc--eeecc-CCceeccccccc
Q 042263 16 QDLFDCPIWYQALKVP--VSQSI-NGHIICSSCLAK 48 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 48 (159)
.+.-.|.+|...|..- -..|. ||.+||+.|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3455799999877532 35676 799999999765
No 117
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=68.72 E-value=2.2 Score=35.04 Aligned_cols=43 Identities=21% Similarity=0.399 Sum_probs=30.6
Q ss_pred CeeecccccccCCCceeec---cCC--ceeccccccccC---CCCCCCccC
Q 042263 17 DLFDCPIWYQALKVPVSQS---ING--HIICSSCLAKVN---NKCPACRSC 59 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC---~~G--H~~C~~C~~~~~---~~CP~Cr~~ 59 (159)
..-.||+|.....--+..= ..| +..|+.|-..|. .+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567999998765444321 356 479999988874 589999875
No 118
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=67.94 E-value=3 Score=25.77 Aligned_cols=26 Identities=31% Similarity=0.649 Sum_probs=22.3
Q ss_pred CCCCCCCCCcceeCh-hHHHhHhhhhc
Q 042263 91 PCACPLLDCNFLGSA-SQLYLYFSWKN 116 (159)
Q Consensus 91 p~~Cp~~gC~~~g~~-~~l~~H~~~~H 116 (159)
++.|.+.+|++.+.. ..|..|+..+|
T Consensus 38 ~~~C~W~~C~~~~~~~~~L~~Hir~~H 64 (64)
T 1zw8_A 38 PLACNWEDCDFLGDDTASIVNHINAQH 64 (64)
T ss_dssp CEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred CCEeeCCCCcCCCCChHHHHhhccccC
Confidence 689999999998764 68999999887
No 119
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.08 E-value=2 Score=26.48 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=23.8
Q ss_pred CeeecccccccCCCceeeccCCceecccccccc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
+-|.|..|...|....+.-..|..+|..|..++
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 457788888888654454467888888887664
No 120
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.90 E-value=2.8 Score=32.17 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=23.4
Q ss_pred eecccccccCCCc--eeecc-CCceeccccccc
Q 042263 19 FDCPIWYQALKVP--VSQSI-NGHIICSSCLAK 48 (159)
Q Consensus 19 l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 48 (159)
-.|++|...|..- -..|. ||++||+.|...
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 5899999887531 25686 899999999765
No 121
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.89 E-value=2.1 Score=26.55 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=25.1
Q ss_pred CCeeecccccccCCCceeeccCCceecccccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
.+-|.|..|...|....+.-..|..+|..|..++
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 33 NDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred cccCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 3457888888888765454467888998887765
No 122
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=64.93 E-value=4.6 Score=26.30 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.4
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhhcC
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWKNG 117 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~H~ 117 (159)
.|+.|+.++|+..... ..|..|+...|.
T Consensus 26 KPYkC~~~~CgKaFsr~s~L~~H~rriHT 54 (73)
T 1x3c_A 26 RPYRCVHQGCFAAFTIQQNLILHYQAVHK 54 (73)
T ss_dssp CSCBCCSTTCCCBCSSHHHHHHHHHHHSS
T ss_pred CCeECCCCCcChhHcCHHHHHHHhhhhCC
Confidence 6899998899998765 579999977775
No 123
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.78 E-value=5.1 Score=22.01 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=20.0
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhh
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSW 114 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~ 114 (159)
+|+.|+..+|++.... ..|..|+..
T Consensus 8 kp~~C~~~~C~k~F~~~~~L~~H~r~ 33 (38)
T 2eln_A 8 ILLKCPTDGCDYSTPDKYKLQAHLKV 33 (38)
T ss_dssp CCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHh
Confidence 5889998789998765 579999764
No 124
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=64.53 E-value=2.9 Score=39.40 Aligned_cols=57 Identities=19% Similarity=0.123 Sum_probs=46.9
Q ss_pred CCCeeecccccccCCCceeeccCC-ceeccccccccC---CCCCCCccCc----chhhHHHHHHHH
Q 042263 15 DQDLFDCPIWYQALKVPVSQSING-HIICSSCLAKVN---NKCPACRSCV----MLRSRVMDIALE 72 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~G-H~~C~~C~~~~~---~~CP~Cr~~~----~~rn~~le~~~~ 72 (159)
-++.|.|||=.++|++||.. +.| +++=++.+.++. .+||.=|.++ ...|.++...++
T Consensus 888 iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~ 952 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKIL 952 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred CcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHH
Confidence 47899999999999999986 566 689999998873 5799888887 457888877776
No 125
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=64.11 E-value=2 Score=27.40 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=26.3
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC-CCCCCCc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN-NKCPACR 57 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~-~~CP~Cr 57 (159)
.+-|.|..|...|..-.+.-..|..+|..|..++. .+|-.|.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg 74 (81)
T 1a7i_A 32 RCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYG 74 (81)
T ss_dssp SSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-------
T ss_pred cccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccC
Confidence 45688999998887654544689999999987753 4666554
No 126
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.47 E-value=4.2 Score=25.75 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=24.1
Q ss_pred CeeecccccccCCCceeeccCCceecccccccc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
+=|.|..|...|..-.+.-..|..+|..|..++
T Consensus 42 ~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 42 GCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp TTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred cCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 457888888888764444467888888887765
No 127
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=63.46 E-value=1.8 Score=26.36 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=20.6
Q ss_pred eeecccccccCCCceeeccCCceeccccccc
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLAK 48 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 48 (159)
-|.|..|...|....+.-..|..+|..|..+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 31 HFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp TCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred cCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 4677777777765444445677787777654
No 128
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=62.72 E-value=7.9 Score=18.75 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=18.8
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhh
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWK 115 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~ 115 (159)
+|+.|++..|+.... ...|..|....
T Consensus 1 kp~~C~~~~C~k~f~~~~~L~~H~~~H 27 (31)
T 1sp2_A 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27 (31)
T ss_dssp CCCBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred CCcCCcCCCCCcccCCHhHHHHHHHHh
Confidence 367888667988755 46899998653
No 129
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.36 E-value=3.4 Score=25.87 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=22.5
Q ss_pred CeeecccccccCCCceeeccCCceecc-cccccc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICS-SCLAKV 49 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~-~C~~~~ 49 (159)
+-|.|..|...|..-.+.-..|..+|. .|..++
T Consensus 35 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~ 68 (76)
T 2cu8_A 35 FCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATL 68 (76)
T ss_dssp TTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHH
T ss_pred CCCCCCCCCCccCCCceEeECCEEecchHHHHHh
Confidence 457788888887654344457888888 687664
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.18 E-value=2.7 Score=25.88 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=23.3
Q ss_pred CeeecccccccCCCceeeccCCceecccccccc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
+-|.|..|...|....+.-..|..+|..|..+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 357788888888654344467888888887664
No 131
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=62.12 E-value=1.9 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=15.5
Q ss_pred eeecccccccCCCceeeccCCceecccccc
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLA 47 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 47 (159)
=|.|..|...|....+.-..|..+|..|..
T Consensus 46 CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~ 75 (77)
T 2egq_A 46 CFHCKKCSVNLANKRFVFHQEQVYCPDCAK 75 (77)
T ss_dssp TCBCSSSCCBCTTSCCCEETTEECCHHHHH
T ss_pred cCEehhcCCCCCCCccEeECCEEEChHHhc
Confidence 355666666655432322455566655543
No 132
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.52 E-value=2.6 Score=25.96 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCeeecccccccCCCceeeccCCceecccccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
.+-|.|..|...|..-.+.-..|..+|..|..+.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 31 ETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred ccCCcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 3457788888888665454467888888887664
No 133
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.49 E-value=2.4 Score=26.04 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCeeecccccccCCCceeeccCCceecccccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
.+-|.|..|...|....+.-..|..+|..|..++
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 3456778888777654444456778888877654
No 134
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=60.22 E-value=2.9 Score=25.54 Aligned_cols=34 Identities=18% Similarity=0.440 Sum_probs=24.1
Q ss_pred CCeeecccccccCCCceeeccCCceec-ccccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIIC-SSCLAKV 49 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C-~~C~~~~ 49 (159)
.+-|.|..|...|..-.+.-..|..+| ..|..++
T Consensus 30 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 30 TECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp TTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 566788888888865444446788888 7776654
No 135
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.38 E-value=3.4 Score=25.87 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=23.7
Q ss_pred CCeeecccccccCC-CceeeccCCceecccccccc
Q 042263 16 QDLFDCPIWYQALK-VPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 16 ~~~l~C~iC~~~l~-~Pv~qC~~GH~~C~~C~~~~ 49 (159)
++-|.|..|...|. ...+.=..|..+|..|..++
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 34578888888886 33333357888888887765
No 136
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.57 E-value=2.4 Score=26.06 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=20.5
Q ss_pred CCeeecccccccCCCceeeccCCceecccccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
.+-|.|..|...|.+-.+.-..|..+|..|..+.
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 3446777777776654333346777777776543
No 137
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.31 E-value=3.8 Score=26.65 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=13.2
Q ss_pred eecccccccCCCceeeccCCceeccccccc
Q 042263 19 FDCPIWYQALKVPVSQSINGHIICSSCLAK 48 (159)
Q Consensus 19 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 48 (159)
|.|..|...|..-.+.-..|..+|..|..+
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 81 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYEK 81 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHHH
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHHH
Confidence 445555544443222223455555555443
No 138
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=58.03 E-value=5.3 Score=30.92 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=22.6
Q ss_pred ecccccccCCCc--eeecc-CCceeccccccc
Q 042263 20 DCPIWYQALKVP--VSQSI-NGHIICSSCLAK 48 (159)
Q Consensus 20 ~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 48 (159)
.|.+|...|..- -..|. ||.+||+.|...
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 799999877531 25686 899999999765
No 139
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=57.92 E-value=4.5 Score=30.15 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=31.6
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC-CCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN-NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~-~~CP~Cr~~~ 60 (159)
.+-|.|..|...|..-.+.-..|..+|..|..++. .+|..|...+
T Consensus 140 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 140 KSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCC
T ss_pred hhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCcc
Confidence 34577888888886533444678888988887653 5788887653
No 140
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=57.87 E-value=3 Score=31.12 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=27.9
Q ss_pred CCCeeecccccccCCCceeeccCCceecccccccc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
-.+-|.|..|...|....+.-..|..+|..|..++
T Consensus 31 H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 65 (192)
T 1b8t_A 31 HKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKK 65 (192)
T ss_dssp CTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHH
T ss_pred cCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhh
Confidence 34678999999999776555578999999998765
No 141
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=57.53 E-value=7.2 Score=22.75 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=20.4
Q ss_pred eCCCeeecccccc-cCCCceeeccCCceecccccc
Q 042263 14 SDQDLFDCPIWYQ-ALKVPVSQSINGHIICSSCLA 47 (159)
Q Consensus 14 ~~~~~l~C~iC~~-~l~~Pv~qC~~GH~~C~~C~~ 47 (159)
|+...+.||.|.. .| ++--..|..+|..|-.
T Consensus 1 m~~~~~~CP~C~~~~l---~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 1 MVNKQKVCPACESAEL---IYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSSCCSCTTTSCCCE---EEETTTTEEEESSSCC
T ss_pred CCCccEeCcCCCCcce---EEcCCCCeEECcccCC
Confidence 3455788999986 22 2222458888888855
No 142
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=57.38 E-value=13 Score=17.92 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=18.7
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhh
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWK 115 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~ 115 (159)
+|+.|++..|+.... ...|..|....
T Consensus 2 k~~~C~~~~C~k~f~~~~~L~~H~~~H 28 (32)
T 1zfd_A 2 RPYSCDHPGCDKAFVRNHDLIRHKKSH 28 (32)
T ss_dssp CSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred CCCcCcCCCCCCccCCHHHHHHHHHHc
Confidence 467888667987655 46899998653
No 143
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=56.45 E-value=19 Score=27.07 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=28.0
Q ss_pred ecccccccCCC-----ceeecc-CCceecccccccc--------------CCCCCCCccCc
Q 042263 20 DCPIWYQALKV-----PVSQSI-NGHIICSSCLAKV--------------NNKCPACRSCV 60 (159)
Q Consensus 20 ~C~iC~~~l~~-----Pv~qC~-~GH~~C~~C~~~~--------------~~~CP~Cr~~~ 60 (159)
.||+|..+..+ ++.||. |...|=..|..-. ...||.|+..-
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 49999988754 377886 6655555554321 24799998876
No 144
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=55.59 E-value=5.7 Score=27.60 Aligned_cols=24 Identities=33% Similarity=0.719 Sum_probs=16.2
Q ss_pred eecc-CCceeccccccccC--CCCCCCccCc
Q 042263 33 SQSI-NGHIICSSCLAKVN--NKCPACRSCV 60 (159)
Q Consensus 33 ~qC~-~GH~~C~~C~~~~~--~~CP~Cr~~~ 60 (159)
+.|. ||+.| ...+. ..||.|+..-
T Consensus 68 ~~C~~CG~~F----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 68 AQCRKCGFVF----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp CBBTTTCCBC----CCCSSCCSSCSSSCCCC
T ss_pred cChhhCcCee----cccCCCCCCCcCCCCCc
Confidence 3565 89998 23332 5899998864
No 145
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.11 E-value=5.2 Score=25.41 Aligned_cols=32 Identities=25% Similarity=0.601 Sum_probs=19.2
Q ss_pred CeeecccccccCCCceeeccCCceecccccccc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
+-|.|..|...|..--+ -..|..+|..|..+.
T Consensus 40 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 40 DHFNCANCGKELTADAR-ELKGELYCLPCHDKM 71 (79)
T ss_dssp TTSBCSSSCCBCCTTCE-EETTEEECHHHHHTT
T ss_pred CCCEeCCCCCccCCCCE-eECCEEeCHHHHHHh
Confidence 34666677666655433 346667777776554
No 146
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=49.81 E-value=11 Score=23.89 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=19.8
Q ss_pred CCeeecccccccCCCceeeccCCceecccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLA 47 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 47 (159)
.+.|.||+|...|.. .=..|-.+|..|..
T Consensus 8 LeiL~CP~ck~~L~~---~~~~g~LvC~~c~~ 36 (67)
T 2jny_A 8 LEVLACPKDKGPLRY---LESEQLLVNERLNL 36 (67)
T ss_dssp TCCCBCTTTCCBCEE---ETTTTEEEETTTTE
T ss_pred HHHhCCCCCCCcCeE---eCCCCEEEcCCCCc
Confidence 568999999986642 21357777777743
No 147
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=49.32 E-value=11 Score=20.60 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCcceeCh-hHHHhHhhhh
Q 042263 89 CAPCACPLLDCNFLGSA-SQLYLYFSWK 115 (159)
Q Consensus 89 ~~p~~Cp~~gC~~~g~~-~~l~~H~~~~ 115 (159)
-+|+.|++..|+..... ..|..|....
T Consensus 16 ~k~~~C~~~~C~k~F~~~~~L~~H~~~H 43 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43 (47)
T ss_dssp TTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred CCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence 46789987679887665 5799997653
No 148
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.02 E-value=4.7 Score=25.49 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=19.1
Q ss_pred eeecccccccCCCceeeccCCceecccccccc
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
-|.|..|...|..-.+.-..|..+|..|..+.
T Consensus 43 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 43 CFTCSNCKQVIGTGSFFPKGEDFYCVTCHETK 74 (82)
T ss_dssp TCCCSSSCCCCTTSCEEEETTEEEEHHHHHHH
T ss_pred cCchhhCCCccCCCccEeeCCEEECHHHHHHH
Confidence 46677777666543333356777777776553
No 149
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.98 E-value=5 Score=25.70 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=29.9
Q ss_pred CeeecccccccCCCce---eeccCCceeccccccccCCCCCCC
Q 042263 17 DLFDCPIWYQALKVPV---SQSINGHIICSSCLAKVNNKCPAC 56 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv---~qC~~GH~~C~~C~~~~~~~CP~C 56 (159)
..-.|..|.+-+.-+- +.|.||..||+.=...-...|+.-
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fD 56 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFD 56 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSC
T ss_pred cCCcchhhCCeecccccCceEecCCCEehhccCCccccCCccc
Confidence 3457999999887663 789999999998766544456543
No 150
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=48.69 E-value=8.3 Score=32.46 Aligned_cols=43 Identities=28% Similarity=0.592 Sum_probs=32.6
Q ss_pred eeecccccccCCCceeeccCCceecccccccc-------CCCCCCCccCc
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLAKV-------NNKCPACRSCV 60 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~~CP~Cr~~~ 60 (159)
.|.||+=+..|..|+.--.|-|.-|-.=..=+ ..+||.|...+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 58999999999999987678998654432111 25899999887
No 151
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.41 E-value=4 Score=25.46 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=14.7
Q ss_pred eeecccccccCCCceeeccCCceeccccccc
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLAK 48 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 48 (159)
-|.|..|...|..--+.-..|..+|..|..+
T Consensus 39 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 69 (77)
T 1g47_A 39 CFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 69 (77)
T ss_dssp TCCCTTTCCCCGGGCSEEETTEEECHHHHHH
T ss_pred cCeECCCCCCCCCCCeEeECCeEeCHHHHHH
Confidence 3455555555543222224455555555544
No 152
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=48.31 E-value=12 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=19.4
Q ss_pred CCeeecccccccCCCceeeccCCceecccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLA 47 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 47 (159)
.+.|.||+|...|.. .=..|-.+|..|..
T Consensus 6 L~iL~CP~ck~~L~~---~~~~~~LiC~~cg~ 34 (68)
T 2jr6_A 6 LDILVCPVTKGRLEY---HQDKQELWSRQAKL 34 (68)
T ss_dssp SCCCBCSSSCCBCEE---ETTTTEEEETTTTE
T ss_pred hhheECCCCCCcCeE---eCCCCEEEcCCCCc
Confidence 568899999976642 21346677776643
No 153
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=48.30 E-value=14 Score=23.02 Aligned_cols=85 Identities=19% Similarity=0.363 Sum_probs=46.3
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccCCCCCCCccCcchhhHHHHHHHHhhccCCCchhhhccCCCCCCCCC
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVNNKCPACRSCVMLRSRVMDIALEKTMSFGENKDHERNCQCAPCACP 95 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~Cr~~~~~rn~~le~~~~~~~~~~~~~~He~~C~~~p~~Cp 95 (159)
...+.|++|...+...... ..|.-- -...-...|+.|...+.... .|.+=+. .|. .-.++.|+
T Consensus 6 ~~~~~C~~C~~~f~~~~~l--~~H~~~--h~~~~~~~C~~C~~~f~~~~-~l~~H~~---------~h~---~~~~~~C~ 68 (96)
T 2dmd_A 6 SGPHKCEVCGKCFSRKDKL--KTHMRC--HTGVKPYKCKTCDYAAADSS-SLNKHLR---------IHS---DERPFKCQ 68 (96)
T ss_dssp CCCCCBTTTTBCCCCHHHH--HHHGGG--CCCCCSEECSSSCCEESSHH-HHHHHHH---------HSC---CCCCEECS
T ss_pred CcCeECCCCCCccCCHHHH--HHHHHh--cCCCCCEeCCCCCCccCCHH-HHHHHHH---------HhC---CCCCccCC
Confidence 4468899999888764221 133210 00111136999987762111 1111110 121 12468898
Q ss_pred CCCCcceeC-hhHHHhHhhhhcCCc
Q 042263 96 LLDCNFLGS-ASQLYLYFSWKNGKT 119 (159)
Q Consensus 96 ~~gC~~~g~-~~~l~~H~~~~H~~~ 119 (159)
. |+.... ..+|..|+...|...
T Consensus 69 ~--C~~~f~~~~~l~~H~~~h~~~~ 91 (96)
T 2dmd_A 69 I--CPYASRNSSQLTVHLRSHTGDS 91 (96)
T ss_dssp S--SSCEESSHHHHHHHHTTCCSCC
T ss_pred C--CCCccCCHHHHHHHHHHhcCCC
Confidence 6 988765 468999998777653
No 154
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=47.51 E-value=6.1 Score=26.77 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=32.8
Q ss_pred eeCCCeeecccccccCC-----Cceeecc-CCceecccccccc----CCCCCCCccCc
Q 042263 13 ISDQDLFDCPIWYQALK-----VPVSQSI-NGHIICSSCLAKV----NNKCPACRSCV 60 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~-----~Pv~qC~-~GH~~C~~C~~~~----~~~CP~Cr~~~ 60 (159)
+++...-.|.||.+-.- .+..-|. |+-.+|..|.+-- ...||.|.++.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 44556677999998742 1222353 6888999997642 36899999886
No 155
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.12 E-value=7.7 Score=24.29 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=19.8
Q ss_pred CeeecccccccCCCceeeccCCceecccccccc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
+-|.|..|...|..-.+.-..|..+|..|..++
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 40 ECLVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp TTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred hhCCcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 346677777777543333356777777776554
No 156
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=46.51 E-value=9.6 Score=31.94 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=37.8
Q ss_pred eeecccccccCCCceeeccCCceecccccccc-------CCCCCCCccCcchh----hHHHHHHHH
Q 042263 18 LFDCPIWYQALKVPVSQSINGHIICSSCLAKV-------NNKCPACRSCVMLR----SRVMDIALE 72 (159)
Q Consensus 18 ~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~-------~~~CP~Cr~~~~~r----n~~le~~~~ 72 (159)
.|.||+=+..++.|+.--.|-|.-|-.=..=+ ..+||.|...+... ...+.++++
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 67899999999999987778998654432211 15899999988222 344444544
No 157
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.49 E-value=13 Score=23.66 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=21.0
Q ss_pred CeeecccccccCCCceeec--cCCceecccccccc
Q 042263 17 DLFDCPIWYQALKVPVSQS--INGHIICSSCLAKV 49 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC--~~GH~~C~~C~~~~ 49 (159)
+-|.|..|...|..-.+.. ..|..+|..|..++
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 41 SCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp TTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 3467777777776544432 36777777777654
No 158
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=45.41 E-value=3.8 Score=24.96 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=5.3
Q ss_pred ecccccccCC
Q 042263 20 DCPIWYQALK 29 (159)
Q Consensus 20 ~C~iC~~~l~ 29 (159)
.|..|.+.+.
T Consensus 13 ~C~~C~~~i~ 22 (72)
T 3f6q_B 13 TCERCKGGFA 22 (72)
T ss_dssp BCTTTCCBCC
T ss_pred cchhcCcccc
Confidence 4555555554
No 159
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=44.32 E-value=4.7 Score=33.47 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=0.0
Q ss_pred eeCCCeeecccccccCCCc--eeecc-CCceeccccccc
Q 042263 13 ISDQDLFDCPIWYQALKVP--VSQSI-NGHIICSSCLAK 48 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~P--v~qC~-~GH~~C~~C~~~ 48 (159)
+-|.+.-.|.+|...|..- -..|. ||++||+.|...
T Consensus 370 ~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 370 VPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp ---------------------------------------
T ss_pred CCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCC
Confidence 3455577899999877531 24676 899999999754
No 160
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.26 E-value=6.6 Score=24.63 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCeeecccccccCCCceeeccCCceecccccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
.+-|.|..|...|....+.-..|..+|..|..++
T Consensus 39 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 39 PECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp TTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred cCcCChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 3457777777777653333356777777776553
No 161
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.45 E-value=17 Score=18.36 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=20.1
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhhc
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWKN 116 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~H 116 (159)
+|+.|++++|+..... ..|..|.....
T Consensus 5 k~~~C~~~~C~k~f~~~~~L~~H~~~H~ 32 (38)
T 1bhi_A 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32 (38)
T ss_dssp CCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred cceECCCCCCCcccCCHHHHHHHHHHhC
Confidence 5778987789887664 57999986543
No 162
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.36 E-value=9.2 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=22.0
Q ss_pred CCeeecccccccCCCceeecc-CCceecccccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSI-NGHIICSSCLAKV 49 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~ 49 (159)
++-|.|..|...|....+.-. .|..+|..|..+.
T Consensus 39 ~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 39 PGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp TTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred HHhcCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 445778888877765444323 5777888877654
No 163
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=43.03 E-value=27 Score=30.41 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=35.9
Q ss_pred CCceEEEeeCCCeeecccccccCCC---ceeecc-CCceeccccccccCCCCC
Q 042263 6 NGSITSTISDQDLFDCPIWYQALKV---PVSQSI-NGHIICSSCLAKVNNKCP 54 (159)
Q Consensus 6 ~~~~~~~~~~~~~l~C~iC~~~l~~---Pv~qC~-~GH~~C~~C~~~~~~~CP 54 (159)
+|--.........-.|.+|...+.. .-++|. ||-.+|..|...+ ..|+
T Consensus 517 ~~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v-~~C~ 568 (587)
T 3ky9_A 517 NGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV-PPCG 568 (587)
T ss_dssp GGCCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS-CCC-
T ss_pred cCCceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhcC-CCCC
Confidence 4455556677778889999998853 567887 8999999999987 3443
No 164
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.04 E-value=17 Score=26.00 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=25.3
Q ss_pred CCeeecccccccCC---Cceeecc-CCceecccccccc
Q 042263 16 QDLFDCPIWYQALK---VPVSQSI-NGHIICSSCLAKV 49 (159)
Q Consensus 16 ~~~l~C~iC~~~l~---~Pv~qC~-~GH~~C~~C~~~~ 49 (159)
.+.-.|.+|..+|. .+-.+|. |.|.+|..|....
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 35567999999883 2334675 8999999998755
No 165
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=42.00 E-value=17 Score=21.02 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCcceeC-hhHHHhHhhhhcC
Q 042263 89 CAPCACPLLDCNFLGS-ASQLYLYFSWKNG 117 (159)
Q Consensus 89 ~~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~ 117 (159)
-.|+.|+. |+.... ...|..|....|.
T Consensus 38 ~~~~~C~~--C~k~f~~~~~L~~H~~~~H~ 65 (66)
T 2drp_A 38 VKVYPCPF--CFKEFTRKDNMTAHVKIIHK 65 (66)
T ss_dssp CCCEECTT--TCCEESCHHHHHHHHHHHTC
T ss_pred CcCeECCC--CCCccCCHHHHHHHHHHHcC
Confidence 35788986 887755 4679999988875
No 166
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.86 E-value=6.3 Score=25.45 Aligned_cols=12 Identities=8% Similarity=-0.153 Sum_probs=6.6
Q ss_pred eecccccccCCC
Q 042263 19 FDCPIWYQALKV 30 (159)
Q Consensus 19 l~C~iC~~~l~~ 30 (159)
-.|..|.+.+.+
T Consensus 26 ~~C~~C~~~I~~ 37 (89)
T 1x64_A 26 PLCDKCGSGIVG 37 (89)
T ss_dssp CBCTTTCCBCCS
T ss_pred CCcccCCCEecc
Confidence 446666655554
No 167
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.64 E-value=20 Score=21.48 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=22.0
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhcCCc
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKNGKT 119 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~~~ 119 (159)
.++.|+. |+.... ...|..|+...|...
T Consensus 44 ~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~ 72 (77)
T 2ct1_A 44 AKFHCPH--CDTVIARKSDLGVHLRKQHSYS 72 (77)
T ss_dssp SSEECSS--SSCEESSHHHHHHHHHHTSCCS
T ss_pred CccCCCC--CCCccCCHHHHHHHHHHhCCCC
Confidence 4788986 988765 468999999988764
No 168
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.42 E-value=8.8 Score=24.83 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=14.9
Q ss_pred eecccccccCCCceeeccCCceecccccccc
Q 042263 19 FDCPIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 19 l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
|.|..|...|..-.+.-..|..+|..|..++
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHHHHHH
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHHHHHH
Confidence 4555555555432232244555555555443
No 169
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=41.11 E-value=13 Score=22.53 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=19.5
Q ss_pred CCCchhhhccCCCCCCCCCCCCCccee
Q 042263 77 FGENKDHERNCQCAPCACPLLDCNFLG 103 (159)
Q Consensus 77 ~~~~~~He~~C~~~p~~Cp~~gC~~~g 103 (159)
...++.|...|+|+.+.|.. |..+.
T Consensus 19 ~~~lKGHKr~C~~r~C~C~k--C~li~ 43 (52)
T 1lpv_A 19 KITLKGHKRYCKFRYCTCEK--CRLTA 43 (52)
T ss_dssp CCTTTTCGGGCTTTTCCSHH--HHHHH
T ss_pred ccccCCccCccCCCCCcCCC--CcCcH
Confidence 35788999999999999963 65443
No 170
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=40.94 E-value=15 Score=23.23 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=18.7
Q ss_pred CCeeecccccccCCCceeeccCCceecccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLA 47 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 47 (159)
.+.|.||+|...|.. .=..|-.+|..|..
T Consensus 6 L~iL~CP~ck~~L~~---~~~~~~LiC~~cg~ 34 (68)
T 2hf1_A 6 LEILVCPLCKGPLVF---DKSKDELICKGDRL 34 (68)
T ss_dssp EEECBCTTTCCBCEE---ETTTTEEEETTTTE
T ss_pred hhheECCCCCCcCeE---eCCCCEEEcCCCCc
Confidence 457899999976642 11346677766643
No 171
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=40.84 E-value=16 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.505 Sum_probs=18.8
Q ss_pred CCeeecccccccCCCceeeccCCceecccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLA 47 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 47 (159)
.+.|.||+|...|.. .=..|-.+|..|..
T Consensus 6 L~iL~CP~ck~~L~~---~~~~~~LiC~~cg~ 34 (70)
T 2js4_A 6 LDILVCPVCKGRLEF---QRAQAELVCNADRL 34 (70)
T ss_dssp CCCCBCTTTCCBEEE---ETTTTEEEETTTTE
T ss_pred hhheECCCCCCcCEE---eCCCCEEEcCCCCc
Confidence 568899999986642 11346666666643
No 172
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.02 E-value=16 Score=22.40 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=15.0
Q ss_pred ecccccccCCCceeecc-CCceecc-ccccc
Q 042263 20 DCPIWYQALKVPVSQSI-NGHIICS-SCLAK 48 (159)
Q Consensus 20 ~C~iC~~~l~~Pv~qC~-~GH~~C~-~C~~~ 48 (159)
.|.||.. .+-|.|+ |+-.+|+ .|...
T Consensus 14 ~C~vC~~---~~kY~CPrC~~~yCSl~C~k~ 41 (56)
T 2yqq_A 14 VCVICLE---KPKYRCPACRVPYCSVVCFRK 41 (56)
T ss_dssp CCTTTCS---CCSEECTTTCCEESSHHHHHH
T ss_pred ccCcCcC---CCeeeCCCCCCCeeCHHHHHH
Confidence 4777766 3346665 5666666 45443
No 173
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=38.95 E-value=28 Score=23.62 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=13.1
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhhc
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWKN 116 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~H 116 (159)
.++.|+.++|+..... ..|..|+...|
T Consensus 127 ~~~~C~~~~C~~~f~~~~~L~~H~~~hh 154 (155)
T 2gli_A 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 154 (155)
T ss_dssp CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred CCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence 3455554455554332 34555555444
No 174
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=38.90 E-value=22 Score=16.34 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=17.1
Q ss_pred CCCCCCCCCcceeC-hhHHHhHhhh
Q 042263 91 PCACPLLDCNFLGS-ASQLYLYFSW 114 (159)
Q Consensus 91 p~~Cp~~gC~~~g~-~~~l~~H~~~ 114 (159)
|+.|++..|+.... ...|..|...
T Consensus 2 ~~~C~~~~C~k~f~~~~~l~~H~~~ 26 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKLNRHKKI 26 (29)
T ss_dssp CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred CCCCcCCcCcCccCCHHHHHHHHHH
Confidence 56787667987755 4678999764
No 175
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.02 E-value=13 Score=23.54 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=16.4
Q ss_pred CeeecccccccCCCceeeccCCceeccccccc
Q 042263 17 DLFDCPIWYQALKVPVSQSINGHIICSSCLAK 48 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 48 (159)
+-|.|..|...|.. .+.-..|..+|..|..+
T Consensus 41 ~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~ 71 (80)
T 2dj7_A 41 SCFKCQTCSVILTG-EYISKDGVPYCESDYHA 71 (80)
T ss_dssp TTCBCSSSCCBCSS-CCEEETTEEECTTHHHH
T ss_pred ccCCcCcCCCCcCC-CeEEECCEEECHHHHHH
Confidence 34566666665554 23324566666666544
No 176
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=37.79 E-value=20 Score=23.74 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=26.4
Q ss_pred CCeeeccc--ccccCCCceeecc-CCceeccccccccCCCCC
Q 042263 16 QDLFDCPI--WYQALKVPVSQSI-NGHIICSSCLAKVNNKCP 54 (159)
Q Consensus 16 ~~~l~C~i--C~~~l~~Pv~qC~-~GH~~C~~C~~~~~~~CP 54 (159)
.....|+. |......| +.|. ||..||..=.......|+
T Consensus 23 ~~~~~C~~~~Ck~~~~l~-f~C~~C~~~FC~~HR~~e~H~C~ 63 (86)
T 1wfe_A 23 HKSYSCSFKGCTDVELVA-VICPYCEKNFCLRHRHQSDHDCE 63 (86)
T ss_dssp SCCEECCSTTCCCEESSC-EECTTTCCEECGGGCSTGGGTCS
T ss_pred CCCCCCCCcCCCCCCccc-eECCCCCcccccccCCccCCCCC
Confidence 34678998 99876665 5798 999999864433334564
No 177
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=37.17 E-value=16 Score=23.17 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=18.7
Q ss_pred CCeeecccccccCCCceeeccCCceecccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLA 47 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~ 47 (159)
.+.|.||+|...|.. .=..|-.+|..|..
T Consensus 6 LeiL~CP~ck~~L~~---~~~~~~LiC~~cg~ 34 (69)
T 2pk7_A 6 LDILACPICKGPLKL---SADKTELISKGAGL 34 (69)
T ss_dssp GGTCCCTTTCCCCEE---CTTSSEEEETTTTE
T ss_pred HhheeCCCCCCcCeE---eCCCCEEEcCCCCc
Confidence 467899999977642 11346666766643
No 178
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=37.10 E-value=19 Score=26.33 Aligned_cols=43 Identities=19% Similarity=0.382 Sum_probs=29.2
Q ss_pred CeeecccccccCC---Cceeecc-CCceeccccccccC----CCCCCCccC
Q 042263 17 DLFDCPIWYQALK---VPVSQSI-NGHIICSSCLAKVN----NKCPACRSC 59 (159)
Q Consensus 17 ~~l~C~iC~~~l~---~Pv~qC~-~GH~~C~~C~~~~~----~~CP~Cr~~ 59 (159)
+.-.|.+|..+|. .+-.+|. |.|.+|..|..... ..|-.|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 4567999998863 3334675 89999999984432 246666553
No 179
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=37.01 E-value=21 Score=22.89 Aligned_cols=83 Identities=14% Similarity=0.311 Sum_probs=46.8
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccCCCCCCCccCcchhhHHHHHHHHhhccCCCchhhhccCCCCCCCC
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVNNKCPACRSCVMLRSRVMDIALEKTMSFGENKDHERNCQCAPCAC 94 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~Cr~~~~~rn~~le~~~~~~~~~~~~~~He~~C~~~p~~C 94 (159)
....+.|++|...+...... ..|.-=. .+ ...|+.|...+.... .|. .|+.--.-.|+.|
T Consensus 13 ~~~~~~C~~C~~~f~~~~~l--~~H~~~H---~~-~~~C~~C~~~f~~~~-~l~-------------~H~~H~~~~~~~C 72 (107)
T 1wjp_A 13 NKEVYQCRLCNAKLSSLLEQ--GSHERLC---RN-AAVCPYCSLRFFSPE-LKQ-------------EHESKCEYKKLTC 72 (107)
T ss_dssp CCCCCBCTTTCCBCSSHHHH--HHHHHHH---HH-SBCCTTTCCCBSSHH-HHH-------------HHHHHCSTGGGEE
T ss_pred CCcCeECCCCCCccCCHHHH--HHHHHHC---CC-CccCCCCCCccCCHH-HHH-------------HHHHcCCCCCccC
Confidence 34568899999888764211 1221100 11 247999988762111 111 1211112246888
Q ss_pred CCCCCcceeCh-hHHHhHhhhhcCCc
Q 042263 95 PLLDCNFLGSA-SQLYLYFSWKNGKT 119 (159)
Q Consensus 95 p~~gC~~~g~~-~~l~~H~~~~H~~~ 119 (159)
+. |+..... ..|..|+...|...
T Consensus 73 ~~--C~~~f~~~~~L~~H~~~~H~~~ 96 (107)
T 1wjp_A 73 LE--CMRTFKSSFSIWRHQVEVHNQN 96 (107)
T ss_dssp GG--GTEECSSHHHHHHHHHHTSCCC
T ss_pred cc--ccchhCCHHHHHHHHHHHcCCC
Confidence 86 8887654 68999998778653
No 180
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=36.87 E-value=58 Score=20.42 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=45.6
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccccCCCCCCCccCcchhhHHHHHHHHhhccCCCchhhhccC-CCCCCC
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVNNKCPACRSCVMLRSRVMDIALEKTMSFGENKDHERNC-QCAPCA 93 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~Cr~~~~~rn~~le~~~~~~~~~~~~~~He~~C-~~~p~~ 93 (159)
....+.|++|...+...... ..|.-- -...-...|+.|...+.... .| ..|+..- .-.++.
T Consensus 14 ~~~~~~C~~C~~~f~~~~~l--~~H~~~--h~~~~~~~C~~C~~~f~~~~-~l-------------~~H~~~h~~~~~~~ 75 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTKSYNL--LIHERT--HTDERPYTCDICHKAFRRQD-HL-------------RDHRYIHSKEKPFK 75 (106)
T ss_dssp CCCCCBCSSSCCBCSSHHHH--HHHHHH--HCCSCCCBCSSSCCBCSCHH-HH-------------HHHGGGSCCCCTTS
T ss_pred CCcCeECCCCCCccCCHHHH--HHHHHH--cCCCCCcCCCCccchhCCHH-HH-------------HHHHHHhCCCCCeE
Confidence 44568899999888754211 123210 00011147999987762111 11 1222111 125788
Q ss_pred CCCCCCcceeC-hhHHHhHhhhhcCC
Q 042263 94 CPLLDCNFLGS-ASQLYLYFSWKNGK 118 (159)
Q Consensus 94 Cp~~gC~~~g~-~~~l~~H~~~~H~~ 118 (159)
|+. |+.... ..+|..|+...+..
T Consensus 76 C~~--C~~~f~~~~~L~~H~~~H~~~ 99 (106)
T 2ee8_A 76 CQE--CGKGFCQSRTLAVHKTLHMQT 99 (106)
T ss_dssp CSS--SCCCCSSHHHHHHHHHHTTSC
T ss_pred CCC--cCCcccCHHHHHHHHHHhCCC
Confidence 986 887755 46899998765554
No 181
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=36.52 E-value=12 Score=19.78 Aligned_cols=11 Identities=27% Similarity=0.334 Sum_probs=5.2
Q ss_pred eeecccccccC
Q 042263 18 LFDCPIWYQAL 28 (159)
Q Consensus 18 ~l~C~iC~~~l 28 (159)
++.||+|...+
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 34455555443
No 182
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=36.34 E-value=33 Score=15.65 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=17.7
Q ss_pred CCCCCCCCCcceeC-hhHHHhHhhhhcCC
Q 042263 91 PCACPLLDCNFLGS-ASQLYLYFSWKNGK 118 (159)
Q Consensus 91 p~~Cp~~gC~~~g~-~~~l~~H~~~~H~~ 118 (159)
|+.|+. |+.... ...|..|....|..
T Consensus 2 ~~~C~~--C~k~f~~~~~l~~H~~~h~~~ 28 (30)
T 1klr_A 2 TYQCQY--CEFRSADSSNLKTHIKTKHSK 28 (30)
T ss_dssp CCCCSS--SSCCCSCSHHHHHHHHHHTSS
T ss_pred CccCCC--CCCccCCHHHHHHHHHHHccC
Confidence 567775 776644 46899998776543
No 183
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=36.27 E-value=25 Score=17.76 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=19.2
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhh
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWK 115 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~ 115 (159)
+|+.|++.+|+..... ..|..|....
T Consensus 7 k~~~C~~~~C~k~f~~~~~L~~H~~~H 33 (37)
T 1va1_A 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33 (37)
T ss_dssp CCEECCSTTCCCEESCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence 4778987679887654 6799997653
No 184
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=35.96 E-value=24 Score=26.06 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=16.7
Q ss_pred Cceeecc-CCceeccccccccCCCCCCCccC
Q 042263 30 VPVSQSI-NGHIICSSCLAKVNNKCPACRSC 59 (159)
Q Consensus 30 ~Pv~qC~-~GH~~C~~C~~~~~~~CP~Cr~~ 59 (159)
++.++|. ||+++= ......||.|..+
T Consensus 136 ~~~~~C~~CG~i~~----~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAV----DEAPEYCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEE----SCCCSBCTTTCCB
T ss_pred CCeeEeCCCCCeeC----CCCCCCCCCCCCC
Confidence 3466776 677653 2333589999875
No 185
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=35.28 E-value=31 Score=22.30 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=25.6
Q ss_pred eeccc--ccccCCCceeecc-CCceeccccccccCCCCCC
Q 042263 19 FDCPI--WYQALKVPVSQSI-NGHIICSSCLAKVNNKCPA 55 (159)
Q Consensus 19 l~C~i--C~~~l~~Pv~qC~-~GH~~C~~C~~~~~~~CP~ 55 (159)
-.|.. |.+.-.-| +.|. ||..||..=+..-...||.
T Consensus 15 ~~Cs~~~C~~~dflp-f~C~~C~~~FC~~HR~~e~H~C~~ 53 (75)
T 1wys_A 15 QHCQVQHCRQRDFLP-FVCDGCSGIFCLEHRSKDSHGCSE 53 (75)
T ss_dssp CCCSCTTTCCCSCCC-EECTTTCCEECSTTCSSGGGTCCC
T ss_pred CCcCcccCCCcccee-eECcccCcCcCcccCCccccCCCC
Confidence 37888 99886667 5788 9999998655444345653
No 186
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=35.08 E-value=18 Score=24.72 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=27.2
Q ss_pred CCeeecccccccCC-CceeeccCCceeccccccccC-CCCCCCcc
Q 042263 16 QDLFDCPIWYQALK-VPVSQSINGHIICSSCLAKVN-NKCPACRS 58 (159)
Q Consensus 16 ~~~l~C~iC~~~l~-~Pv~qC~~GH~~C~~C~~~~~-~~CP~Cr~ 58 (159)
.+-|.|..|...|. ...+.-..|..+|..|..++. .+|..+..
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~ 78 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGS 78 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCC
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCC
Confidence 34578888888883 333433678888888877653 34554443
No 187
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=34.40 E-value=13 Score=21.93 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=19.4
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAK 48 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 48 (159)
..+...|+-|. -+.+|+ +++|..|++-
T Consensus 10 ~~D~WkC~~C~-~~N~Pl------~r~C~rCw~L 36 (46)
T 2c6a_A 10 LADYWKCTSCN-EMNPPL------PSHCNRCWAL 36 (46)
T ss_dssp GGGCEECTTTC-CEECSS------CSSCTTTCCC
T ss_pred ccceEeccccc-ccCCCc------cchhhHHHhh
Confidence 34788999998 566663 3778888763
No 188
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.67 E-value=30 Score=20.22 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=21.6
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhhcCCc
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWKNGKT 119 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~H~~~ 119 (159)
.++.|+. |+..... ..|..|+...|...
T Consensus 36 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~ 64 (70)
T 1x5w_A 36 RPFKCNY--CSFDTKQPSNLSKHMKKFHGDM 64 (70)
T ss_dssp CSEECSS--SSCEESSHHHHHHHHHHHHSSS
T ss_pred CCEeCCC--CCCccCCHHHHHHHHHHHhCCC
Confidence 5788986 8887654 68999998888654
No 189
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.49 E-value=36 Score=15.31 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=16.1
Q ss_pred CCCCCCCCCcceeC-hhHHHhHhhhhc
Q 042263 91 PCACPLLDCNFLGS-ASQLYLYFSWKN 116 (159)
Q Consensus 91 p~~Cp~~gC~~~g~-~~~l~~H~~~~H 116 (159)
|+.|+. |+.... ...|..|....+
T Consensus 2 ~~~C~~--C~~~f~~~~~l~~H~~~h~ 26 (29)
T 2m0e_A 2 EHKCPH--CDKKFNQVGNLKAHLKIHI 26 (29)
T ss_dssp CCCCSS--CCCCCCTTTHHHHHHHHHH
T ss_pred CCcCCC--CCcccCCHHHHHHHHHHhc
Confidence 567875 776644 467888986544
No 190
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=33.25 E-value=20 Score=25.02 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=25.3
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAK 48 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 48 (159)
.+...|--|...+-++.....-|..+|.+|...
T Consensus 3 ~~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 3 FDYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 455678899988888766556788899998764
No 191
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.13 E-value=14 Score=23.05 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=19.7
Q ss_pred CeeecccccccCCC-ceee-ccCCceecccccccc
Q 042263 17 DLFDCPIWYQALKV-PVSQ-SINGHIICSSCLAKV 49 (159)
Q Consensus 17 ~~l~C~iC~~~l~~-Pv~q-C~~GH~~C~~C~~~~ 49 (159)
+-|.|..|...|.+ .-+. -..|..+|..|..++
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~ 74 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV 74 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHH
Confidence 45677777777742 2232 246777777776553
No 192
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=33.04 E-value=12 Score=22.85 Aligned_cols=26 Identities=23% Similarity=0.669 Sum_probs=17.8
Q ss_pred CCeeecccccccCCCceeeccCCceecc--ccc
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICS--SCL 46 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~--~C~ 46 (159)
.+.|.||+|...|.. ..|..+|. .|.
T Consensus 8 L~iL~CP~c~~~L~~-----~~~~L~C~~~~c~ 35 (56)
T 2kpi_A 8 LEILACPACHAPLEE-----RDAELICTGQDCG 35 (56)
T ss_dssp TTSCCCSSSCSCEEE-----ETTEEEECSSSCC
T ss_pred HhheeCCCCCCccee-----cCCEEEcCCcCCC
Confidence 568899999976532 12677777 664
No 193
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=32.90 E-value=37 Score=19.80 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=19.3
Q ss_pred CCeeecccccccCCCceeeccCCceeccccccccC--CCCCCCccC
Q 042263 16 QDLFDCPIWYQALKVPVSQSINGHIICSSCLAKVN--NKCPACRSC 59 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~~~--~~CP~Cr~~ 59 (159)
+..+.|++|.-+..+. .|-. .=++.+- ..||.|..+
T Consensus 2 m~~y~C~vCGyvyd~~-----~Gd~---t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPA-----EHDN---VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCCEEETTTCCEECGG-----GGTT---CCGGGSCTTCBCTTTCCB
T ss_pred CCEEECCCCCeEEeCC-----cCCC---cchhhCCCCCcCcCCCCc
Confidence 4567888888555321 1211 1122332 379999765
No 194
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=32.77 E-value=24 Score=19.51 Aligned_cols=26 Identities=15% Similarity=0.511 Sum_probs=19.6
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhcC
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKNG 117 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~ 117 (159)
.|+.|+. |+.... ...|..|+...|+
T Consensus 31 ~~~~C~~--C~~~f~~~~~l~~H~~~hh~ 57 (57)
T 3uk3_C 31 KPYKCEF--CEYAAAQKTSLRYHLERHHK 57 (57)
T ss_dssp CCEECSS--SSCEESSHHHHHHHHHHHC-
T ss_pred CCcCCCC--CcchhCCHHHHHHHHHHhcC
Confidence 4788986 988755 4689999988774
No 195
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=32.76 E-value=94 Score=20.53 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=28.7
Q ss_pred CCeeecccccccCC-Cceeecc-CCceeccccccccC------CCCCCCccCc
Q 042263 16 QDLFDCPIWYQALK-VPVSQSI-NGHIICSSCLAKVN------NKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~-~Pv~qC~-~GH~~C~~C~~~~~------~~CP~Cr~~~ 60 (159)
.+...| ||...-. ..+.+|. |.-.|=..|...-. ..||.|+..-
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRN 77 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSC
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCC
Confidence 456778 8987653 4677886 56666667765321 4699997543
No 196
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=32.49 E-value=16 Score=22.78 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=24.1
Q ss_pred CeeecccccccCCCceeecc-CCceeccccccccC-------CCCCCCccC
Q 042263 17 DLFDCPIWYQALKVPVSQSI-NGHIICSSCLAKVN-------NKCPACRSC 59 (159)
Q Consensus 17 ~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~~-------~~CP~Cr~~ 59 (159)
..-.|.||.+- ..+..|. |...|=..|+..-. ..||.|...
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34458888753 3355564 55566666664321 368888654
No 197
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=32.39 E-value=37 Score=15.46 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=16.2
Q ss_pred CCCCCCCCCcceeC-hhHHHhHhhhhc
Q 042263 91 PCACPLLDCNFLGS-ASQLYLYFSWKN 116 (159)
Q Consensus 91 p~~Cp~~gC~~~g~-~~~l~~H~~~~H 116 (159)
|+.|+. |+.... ...|..|.....
T Consensus 2 ~~~C~~--C~k~f~~~~~l~~H~~~H~ 26 (29)
T 1rik_A 2 KFACPE--CPKRFMRSDHLTLHILLHE 26 (29)
T ss_dssp CEECSS--SSCEESCSHHHHHHHTGGG
T ss_pred CccCCC--CCchhCCHHHHHHHHHHhc
Confidence 567765 877654 467999987543
No 198
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=32.24 E-value=22 Score=26.77 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=16.7
Q ss_pred eecccccccCCC--ceeeccCCcee
Q 042263 19 FDCPIWYQALKV--PVSQSINGHII 41 (159)
Q Consensus 19 l~C~iC~~~l~~--Pv~qC~~GH~~ 41 (159)
|.||+|...+.. ..+.|.++|.|
T Consensus 3 ~~Cp~C~~~~~~~~~~~~C~~~~~~ 27 (269)
T 1p91_A 3 FSCPLCHQPLSREKNSYICPQRHQF 27 (269)
T ss_dssp BBCTTTCCBCEEETTEEECTTCCEE
T ss_pred ccCCCCCccceeCCCEEECCCCCcC
Confidence 789999987632 24578887765
No 199
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=32.14 E-value=41 Score=15.23 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=16.4
Q ss_pred CCCCCCCCCcceeC-hhHHHhHhhhhc
Q 042263 91 PCACPLLDCNFLGS-ASQLYLYFSWKN 116 (159)
Q Consensus 91 p~~Cp~~gC~~~g~-~~~l~~H~~~~H 116 (159)
|+.|+. |+.... ...|..|....+
T Consensus 2 ~~~C~~--C~~~f~~~~~l~~H~~~h~ 26 (29)
T 1ard_A 2 SFVCEV--CTRAFARQEHLKRHYRSHT 26 (29)
T ss_dssp CCBCTT--TCCBCSSHHHHHHHHHHHS
T ss_pred CeECCC--CCcccCCHHHHHHHHHHhc
Confidence 567875 877654 467899987643
No 200
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.90 E-value=4.5 Score=25.56 Aligned_cols=17 Identities=18% Similarity=0.016 Sum_probs=11.3
Q ss_pred CCeeecccccccCCCce
Q 042263 16 QDLFDCPIWYQALKVPV 32 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv 32 (159)
+..-.|..|.+.+.+.+
T Consensus 13 ~~~~~C~~C~~~I~~~~ 29 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVF 29 (79)
T ss_dssp CCCCCCSSSCCCCCSSC
T ss_pred CCCCccccCCCCccCcE
Confidence 34556888887776643
No 201
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=31.89 E-value=11 Score=28.84 Aligned_cols=25 Identities=0% Similarity=-0.187 Sum_probs=8.5
Q ss_pred CCCCCCCC--CCccee-----ChhHHHhHhhh
Q 042263 90 APCACPLL--DCNFLG-----SASQLYLYFSW 114 (159)
Q Consensus 90 ~p~~Cp~~--gC~~~g-----~~~~l~~H~~~ 114 (159)
..+.||+. ||...+ ++.+|.+|+..
T Consensus 8 ~~i~c~~~~~gc~~~~~~~~~~r~~~~~h~~~ 39 (228)
T 1flk_A 8 DSMKSSVESLQNRVTELESVDKSAGQVARNTG 39 (228)
T ss_dssp ----------------CTTTTTTTTTHHHHHH
T ss_pred hheeccccccCceeeccccccchhHHHHHHHH
Confidence 45778875 888888 88888888763
No 202
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.84 E-value=13 Score=25.14 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=29.1
Q ss_pred CCeeecccccccCCC--ceeeccCCceecccccccc-CCCCCCCc
Q 042263 16 QDLFDCPIWYQALKV--PVSQSINGHIICSSCLAKV-NNKCPACR 57 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~--Pv~qC~~GH~~C~~C~~~~-~~~CP~Cr 57 (159)
++-|.|..|...|.. ..+.-..|..+|..|..+. ..+|-.|.
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS 72 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCB
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCC
Confidence 456889999998864 2344478899999998764 34555554
No 203
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=31.56 E-value=33 Score=20.78 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=20.8
Q ss_pred CCCeeecccccccCCCceeeccCCceeccccccc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSINGHIICSSCLAK 48 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 48 (159)
..+.+.||.|...- -++--..|-.+|..|-.-
T Consensus 8 ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 8 ALPRVTCPNHPDAI--LVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CCSCCSBTTBSSSC--CEECSSSCCEECTTTCCE
T ss_pred ccccccCcCCCCCc--eeEeCCCCeEEeCCCCCE
Confidence 34566899997522 233335688999998543
No 204
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=31.13 E-value=32 Score=19.27 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=21.5
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhcCCc
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKNGKT 119 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~~~ 119 (159)
.|+.|+. |+.... ...|..|+...|...
T Consensus 29 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~ 57 (60)
T 2adr_A 29 KPYPCGL--CNRAFTRRDLLIRHAQKIHSGN 57 (60)
T ss_dssp CSEECTT--TCCEESSHHHHHHHHTTTSCCS
T ss_pred CCccCCC--CCCccCCHHHHHHHHHHHcCCc
Confidence 5788986 888755 468999998888754
No 205
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=29.53 E-value=41 Score=22.19 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCcceeCh-hHHHhHhhhhcCCce
Q 042263 89 CAPCACPLLDCNFLGSA-SQLYLYFSWKNGKTF 120 (159)
Q Consensus 89 ~~p~~Cp~~gC~~~g~~-~~l~~H~~~~H~~~~ 120 (159)
-.|+.|+. |+..... ..|..|....|++.|
T Consensus 98 ~~~~~C~~--C~k~f~~~~~l~~H~~~h~~~~v 128 (129)
T 2wbt_A 98 EHTKVCPV--CKKEFTSTDSALDHVCKKHNICV 128 (129)
T ss_dssp CCCCBCTT--TCCBCSSHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCC--CCcccCCHHHHHHHHHHHCCccC
Confidence 35778976 8877654 679999998888743
No 206
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=29.39 E-value=48 Score=15.17 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=16.9
Q ss_pred CCCCCCCCCcceeC-hhHHHhHhhhhcC
Q 042263 91 PCACPLLDCNFLGS-ASQLYLYFSWKNG 117 (159)
Q Consensus 91 p~~Cp~~gC~~~g~-~~~l~~H~~~~H~ 117 (159)
|+.|+. |+.... ...|..|....|.
T Consensus 2 ~~~C~~--C~k~f~~~~~l~~H~~~~H~ 27 (30)
T 1paa_A 2 AYACGL--CNRAFTRRDLLIRHAQKIHS 27 (30)
T ss_dssp CSBCTT--TCCBCSSSHHHHHHHTTTSC
T ss_pred CcCCcc--cCcccCChHHHHHHHHHHcc
Confidence 567865 876644 4679999655564
No 207
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=29.30 E-value=24 Score=21.31 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=20.8
Q ss_pred eCCCeeecccccccCCCceeeccCCceeccccccc
Q 042263 14 SDQDLFDCPIWYQALKVPVSQSINGHIICSSCLAK 48 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~C~~~ 48 (159)
...|...|+-|. .+.+|+ +++|..|++-
T Consensus 7 ~~eD~WkC~~C~-k~N~Pl------~ryC~rCwaL 34 (53)
T 2cr8_A 7 GSEDEWQCTECK-KFNSPS------KRYCFRCWAL 34 (53)
T ss_dssp CCSCCEECSSSC-CEECSS------CCBCTTTCCB
T ss_pred CCcceeeccccc-ccCCCc------cchhHHHHHh
Confidence 345788999998 566664 3789999864
No 208
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=28.99 E-value=50 Score=21.09 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=24.1
Q ss_pred chhhhccC-CCCCCCCCCCCCcceeC-hhHHHhHhhhhcCC
Q 042263 80 NKDHERNC-QCAPCACPLLDCNFLGS-ASQLYLYFSWKNGK 118 (159)
Q Consensus 80 ~~~He~~C-~~~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~~ 118 (159)
+..|...- .-.++.|++..|+.... ..+|..|+...+..
T Consensus 24 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~ 64 (119)
T 2jp9_A 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64 (119)
T ss_dssp HHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCC
T ss_pred HHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCC
Confidence 44554421 23567888667877655 46788888775554
No 209
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.92 E-value=36 Score=20.18 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=15.4
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhc
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKN 116 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H 116 (159)
+++.|+.++|+.... ...|..|+...|
T Consensus 6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H 33 (79)
T 2dlk_A 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQH 33 (79)
T ss_dssp SSEECSSTTTCCEESSHHHHHHHHHHGG
T ss_pred CCccCCCCCCcCccCCHHHHHHHHHHHh
Confidence 345566556666544 345667766444
No 210
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.72 E-value=22 Score=21.32 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=22.6
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhhcCCce
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWKNGKTF 120 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~H~~~~ 120 (159)
.++.|+. |+..... ..|..|+...|....
T Consensus 37 ~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~~ 66 (78)
T 2d9h_A 37 LRFPCEF--CGKRFEKPDSVAAHRSKSHPALL 66 (78)
T ss_dssp CCEECTT--TCCEESSHHHHHHHHHHTSTTTS
T ss_pred cccCCCC--CCchhCCHHHHHHHHHHhCCCCC
Confidence 5788986 9887654 689999999888643
No 211
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.46 E-value=26 Score=21.87 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=23.2
Q ss_pred eeeccc--ccccCCCceeecc-CCceeccccccccCCCCC
Q 042263 18 LFDCPI--WYQALKVPVSQSI-NGHIICSSCLAKVNNKCP 54 (159)
Q Consensus 18 ~l~C~i--C~~~l~~Pv~qC~-~GH~~C~~C~~~~~~~CP 54 (159)
.-.|+. |...-..| +.|. ||..||..=...-...|+
T Consensus 12 ~~~Cs~~~Ck~~~ll~-f~C~~C~~~FC~~HR~~e~H~C~ 50 (63)
T 1x4v_A 12 TNKCERAGCRQREMMK-LTCERCSRNFCIKHRHPLDHDCS 50 (63)
T ss_dssp CCCCCSTTCCCCCSSC-CBCSSSCCBCCHHHHSTTSSCCC
T ss_pred CCCCCccCCCCCCccc-eECCCCCcccCcccCCccCCcCC
Confidence 456888 99765455 5788 899999753333223454
No 212
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.27 E-value=45 Score=16.01 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=18.7
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhcC
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKNG 117 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~ 117 (159)
+|+.|+. |+.... ...|..|....+.
T Consensus 6 k~~~C~~--C~k~f~~~~~L~~H~~~h~~ 32 (35)
T 2elx_A 6 SGYVCAL--CLKKFVSSIRLRSHIREVHG 32 (35)
T ss_dssp CSEECSS--SCCEESSHHHHHHHHHHTSC
T ss_pred CCeECCC--CcchhCCHHHHHHHHHHHcC
Confidence 4778876 887755 4689999876544
No 213
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.23 E-value=41 Score=15.26 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=15.9
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhh
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSW 114 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~ 114 (159)
+|+.|+. |+.... ...|..|...
T Consensus 2 k~~~C~~--C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 2 RPYSCSV--CGKRFSLKHQMETHYRV 25 (28)
T ss_dssp CSEECSS--SCCEESCHHHHHHHHTT
T ss_pred cCccCCC--CCcccCCHHHHHHHHHh
Confidence 3667875 877655 4678889764
No 214
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=27.05 E-value=39 Score=19.73 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=20.4
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhcCC
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKNGK 118 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~~ 118 (159)
+++.|++..|+.... ...|..|....+..
T Consensus 18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~ 47 (73)
T 1f2i_G 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ 47 (73)
T ss_dssp CCEECSSTTBCCEESSHHHHHHHHHHHHCC
T ss_pred CccCCcCCCCCCccCCHHHHHHHHHhhCCC
Confidence 567888767887655 45788897765544
No 215
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=26.61 E-value=39 Score=20.44 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=16.3
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhcCC
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKNGK 118 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~~ 118 (159)
.++.|+. |+.... ...|..|+...+..
T Consensus 33 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~ 60 (90)
T 1a1h_A 33 KPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60 (90)
T ss_dssp CCEECTT--TCCEESCHHHHHHHHHHHHCC
T ss_pred CCccCCC--CCcccCCHHHHHHHHHHcCCC
Confidence 4667765 766544 35677777655443
No 216
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.61 E-value=38 Score=16.78 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=17.4
Q ss_pred CCCCCCCCCCcceeCh--hHHHhHhhhh
Q 042263 90 APCACPLLDCNFLGSA--SQLYLYFSWK 115 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~--~~l~~H~~~~ 115 (159)
+|+.|+. |+..... ..|..|....
T Consensus 8 k~~~C~~--C~k~f~~~~~~L~~H~~~H 33 (37)
T 2elp_A 8 RAMKCPY--CDFYFMKNGSDLQRHIWAH 33 (37)
T ss_dssp CCEECSS--SSCEECSSCHHHHHHHHHH
T ss_pred CCeECCC--CChhhccCHHHHHHHHHhc
Confidence 5778875 8877665 5799997653
No 217
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.29 E-value=45 Score=14.99 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=16.3
Q ss_pred CCCCCCCCCcceeC-hhHHHhHhhhhc
Q 042263 91 PCACPLLDCNFLGS-ASQLYLYFSWKN 116 (159)
Q Consensus 91 p~~Cp~~gC~~~g~-~~~l~~H~~~~H 116 (159)
|+.|+. |+.... ...|..|.....
T Consensus 2 ~~~C~~--C~k~f~~~~~l~~H~~~H~ 26 (29)
T 2m0f_A 2 PLKCRE--CGKQFTTSGNLKRHLRIHS 26 (29)
T ss_dssp CEECTT--TSCEESCHHHHHHHHHHHH
T ss_pred CccCCC--CCCccCChhHHHHHHHHhc
Confidence 567775 877654 467889976543
No 218
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=25.85 E-value=21 Score=23.77 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=18.8
Q ss_pred CCCCCCccCcchh---hHHHHHHHH------hhccCCCc
Q 042263 51 NKCPACRSCVMLR---SRVMDIALE------KTMSFGEN 80 (159)
Q Consensus 51 ~~CP~Cr~~~~~r---n~~le~~~~------~~~~~~~~ 80 (159)
-+||.|...++-+ ....|++.+ ..+.+.+.
T Consensus 52 FkCP~CgEEFyG~~Lp~~EaeKVFELLNdFkGsIDwenk 90 (95)
T 2k5c_A 52 FKCPVCGEEFYGKTLPRREAEKVFELLNDFKGGIDWENK 90 (95)
T ss_dssp EECTTTCCEEETTSSCTTTHHHHHHHHHSCSSSCBTTTT
T ss_pred hcCCCccHHHhcccCChHHHHHHHHHHHHccCccccccc
Confidence 4799999998333 344566665 45555543
No 219
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=25.41 E-value=49 Score=19.28 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=17.6
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhcCC
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKNGK 118 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~~ 118 (159)
++..|+..+|+.... ...|..|+...+..
T Consensus 16 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~ 45 (72)
T 2epa_A 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGE 45 (72)
T ss_dssp CCEECSSTTTCCEESSHHHHHHHHHHHSSS
T ss_pred CceeCCCCCCccccCCHHHHHHHHHhcCCC
Confidence 355677667776654 35677777654433
No 220
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.31 E-value=56 Score=14.70 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=17.0
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhc
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKN 116 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H 116 (159)
.|+.|+. |+.... ...|..|....+
T Consensus 2 k~~~C~~--C~~~f~~~~~l~~H~~~h~ 27 (30)
T 2m0d_A 2 KPYQCDY--CGRSFSDPTSKMRHLETHD 27 (30)
T ss_dssp CCEECTT--TCCEESCHHHHHHHHHTTC
T ss_pred cCccCCC--CCcccCCHHHHHHHHHHhc
Confidence 3667875 877655 467899986543
No 221
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.94 E-value=56 Score=15.82 Aligned_cols=24 Identities=21% Similarity=0.607 Sum_probs=17.5
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhh
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWK 115 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~ 115 (159)
.|+.|+. |+..... ..|..|....
T Consensus 8 k~~~C~~--C~k~f~~~~~l~~H~~~H 32 (36)
T 2elt_A 8 KPYKCPQ--CSYASAIKANLNVHLRKH 32 (36)
T ss_dssp CSEECSS--SSCEESSHHHHHHHHHHH
T ss_pred CCCCCCC--CCcccCCHHHHHHHHHHc
Confidence 4778876 8877554 6799998653
No 222
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.87 E-value=38 Score=21.82 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCCcceeCh-hHHHhHhhhhcCC
Q 042263 88 QCAPCACPLLDCNFLGSA-SQLYLYFSWKNGK 118 (159)
Q Consensus 88 ~~~p~~Cp~~gC~~~g~~-~~l~~H~~~~H~~ 118 (159)
.-+|+.|+. |+..... ..|..|+...|..
T Consensus 59 ~~k~~~C~~--Cgk~F~~~~~L~~H~~~~H~~ 88 (96)
T 2ctd_A 59 KQEMFTCHH--CGKQLRSLAGMKYHVMANHNS 88 (96)
T ss_dssp CCCCCCCSS--SCCCCSSHHHHHHHHHHHTCC
T ss_pred CCCCeECCC--CCCeeCCHHHHHHHhHHhcCC
Confidence 346889986 8877654 6899996667754
No 223
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.83 E-value=62 Score=15.57 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=18.0
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhc
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKN 116 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H 116 (159)
+|+.|+. |+.... ...|..|....+
T Consensus 6 k~~~C~~--C~k~f~~~~~l~~H~~~H~ 31 (35)
T 1srk_A 6 RPFVCRI--CLSAFTTKANCARHLKVHT 31 (35)
T ss_dssp SCEECSS--SCCEESSHHHHHHHHGGGT
T ss_pred cCeeCCC--CCcccCCHHHHHHHHHHcC
Confidence 5778876 887765 467999986644
No 224
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.42 E-value=47 Score=16.31 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=18.9
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhhcC
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWKNG 117 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~H~ 117 (159)
.|+.|+. |+..... ..|..|....+.
T Consensus 8 k~~~C~~--C~k~f~~~~~l~~H~~~h~~ 34 (37)
T 2elo_A 8 RSYSCPV--CEKSFSEDRLIKSHIKTNHP 34 (37)
T ss_dssp CCCEETT--TTEECSSHHHHHHHHHHHCS
T ss_pred CCcCCCC--CCCccCCHHHHHHHHHHHcC
Confidence 5788876 8877554 679999876544
No 225
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.13 E-value=71 Score=15.45 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=16.6
Q ss_pred CCCCCCCCCcceeC-hhHHHhHhhhhc
Q 042263 91 PCACPLLDCNFLGS-ASQLYLYFSWKN 116 (159)
Q Consensus 91 p~~Cp~~gC~~~g~-~~~l~~H~~~~H 116 (159)
|+.|+. |+.... ...|..|+....
T Consensus 2 p~~C~~--C~k~F~~~~~L~~H~~~H~ 26 (33)
T 1rim_A 2 KFACPE--CPKRFMRSDHLSKHITLHE 26 (33)
T ss_dssp CCCCSS--SCCCCSSHHHHHHHHHHHT
T ss_pred cccCCC--CCchhCCHHHHHHHHHHhC
Confidence 667875 877644 468999986543
No 226
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=24.13 E-value=46 Score=21.22 Aligned_cols=8 Identities=50% Similarity=1.086 Sum_probs=5.0
Q ss_pred CCCCCccCc
Q 042263 52 KCPACRSCV 60 (159)
Q Consensus 52 ~CP~Cr~~~ 60 (159)
+|| |...+
T Consensus 23 ~C~-CG~~~ 30 (71)
T 1gh9_A 23 KCV-CGRTV 30 (71)
T ss_dssp EET-TTEEE
T ss_pred ECC-CCCee
Confidence 576 76655
No 227
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.82 E-value=47 Score=21.24 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=21.9
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhhcCC
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWKNGK 118 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~H~~ 118 (159)
+|+.|+. |+..... ..|..|+...|..
T Consensus 55 k~~~C~~--C~k~F~~~~~L~~H~~~~H~~ 82 (85)
T 2lv2_A 55 QVFPCKY--CPATFYSSPGLTRHINKCHPS 82 (85)
T ss_dssp SSEECTT--SSCEESSHHHHHHHHHTTCTT
T ss_pred CccCCCC--CCCEeCCHHHHHHhCcccCcC
Confidence 5889986 9988654 6899999998874
No 228
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=23.71 E-value=46 Score=19.73 Aligned_cols=38 Identities=29% Similarity=0.259 Sum_probs=25.2
Q ss_pred chhhhccC-CCCCCCCCCCCCcceeC-hhHHHhHhhhhcC
Q 042263 80 NKDHERNC-QCAPCACPLLDCNFLGS-ASQLYLYFSWKNG 117 (159)
Q Consensus 80 ~~~He~~C-~~~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~ 117 (159)
+..|+..= .-.|+.|+..+|+.... ..+|..|+...+.
T Consensus 19 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 58 (85)
T 2j7j_A 19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58 (85)
T ss_dssp HHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence 44554331 23678898878987755 4678999876555
No 229
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=23.63 E-value=43 Score=20.52 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=21.9
Q ss_pred CCchhhhccCCCCCCCCCCCCCcc--eeChhHHHhHhhh
Q 042263 78 GENKDHERNCQCAPCACPLLDCNF--LGSASQLYLYFSW 114 (159)
Q Consensus 78 ~~~~~He~~C~~~p~~Cp~~gC~~--~g~~~~l~~H~~~ 114 (159)
.+++.|..+|+... ||+ |.- ..+...|..|+..
T Consensus 17 kEl~~H~~sCp~gq--CPY--C~~~~e~tesAlQaHfkv 51 (57)
T 2k9h_A 17 KELESHRQSCINGQ--CPY--CMTITEATESALQAHYSI 51 (57)
T ss_dssp TTHHHHHHHHTTTB--CTT--TCCBCCSSHHHHHHHHTT
T ss_pred HHHHHHhccCCCCC--CCc--ccCcCCcCHHHHHHHHHH
Confidence 47889999888774 554 422 2344678888864
No 230
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.54 E-value=38 Score=21.50 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=23.3
Q ss_pred CCeeecccccccCCCceeecc-C-CceeccccccccC
Q 042263 16 QDLFDCPIWYQALKVPVSQSI-N-GHIICSSCLAKVN 50 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~-~-GH~~C~~C~~~~~ 50 (159)
.+.--|-||.+- .++.|. | |-+||..|+....
T Consensus 6 ee~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED---ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC---CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC---CeEEecCCCCceehHHHHHHHc
Confidence 345558888864 567775 5 8899999988653
No 231
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=23.30 E-value=68 Score=20.07 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=27.1
Q ss_pred CCCeeecccccccCCCceeeccC---C-ceeccccccc--c---CCCCCCCccCc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSIN---G-HIICSSCLAK--V---NNKCPACRSCV 60 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~---G-H~~C~~C~~~--~---~~~CP~Cr~~~ 60 (159)
+.+..-| +|..+-...+.+|.. . ..|=..|+.- . ...||.|+...
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 3456667 899876667778763 2 2344455431 1 13699997653
No 232
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.16 E-value=60 Score=15.81 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=17.3
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhh
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWK 115 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~ 115 (159)
.|+.|+. |+..... ..|..|....
T Consensus 8 k~~~C~~--C~k~f~~~~~l~~H~~~H 32 (36)
T 2elq_A 8 KPFKCSL--CEYATRSKSNLKAHMNRH 32 (36)
T ss_dssp CSEECSS--SSCEESCHHHHHHHHHHS
T ss_pred CCccCCC--CCchhCCHHHHHHHHHHh
Confidence 5778876 8877654 6789997653
No 233
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=22.81 E-value=36 Score=23.09 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=24.8
Q ss_pred CCeeecccccccCCCcee---------------eccCCceeccccccccCCCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKVPVS---------------QSINGHIICSSCLAKVNNKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~---------------qC~~GH~~C~~C~~~~~~~CP~Cr~~~ 60 (159)
.+.|.||+|...|.--.. .=..| ..|..|..... .||.|+..+
T Consensus 6 LdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~-~~~~e~~~~~L-vC~~c~~~Y 63 (97)
T 2k5r_A 6 LHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADG-SIQNQSLHEAL-ITRDRKQVF 63 (97)
T ss_dssp CSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTS-CBCCCCCSEEE-ECTTSCEEE
T ss_pred hhheECCCCCCcccccccchhhhhhhhhhccccccccc-cccccccCCeE-EcCCCCCCc
Confidence 578899999986642100 00112 25666665543 588787765
No 234
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.76 E-value=64 Score=15.69 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=17.3
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhh
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWK 115 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~ 115 (159)
.|+.|+. |+..... ..|..|....
T Consensus 8 k~~~C~~--C~k~f~~~~~l~~H~~~H 32 (36)
T 2els_A 8 KIFTCEY--CNKVFKFKHSLQAHLRIH 32 (36)
T ss_dssp CCEECTT--TCCEESSHHHHHHHHHHH
T ss_pred CCEECCC--CCceeCCHHHHHHHHHHh
Confidence 4778876 8877554 6789997653
No 235
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.58 E-value=19 Score=24.88 Aligned_cols=14 Identities=7% Similarity=-0.112 Sum_probs=9.4
Q ss_pred eeecccccccCCCc
Q 042263 18 LFDCPIWYQALKVP 31 (159)
Q Consensus 18 ~l~C~iC~~~l~~P 31 (159)
.-.|..|.+++.+.
T Consensus 61 ~~~C~~C~~~I~~~ 74 (123)
T 2l4z_A 61 WKRCAGCGGKIADR 74 (123)
T ss_dssp CSBBSSSSSBCCSS
T ss_pred CCcCcCCCCCcCCc
Confidence 45677887777654
No 236
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=22.51 E-value=1.5e+02 Score=18.51 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=23.9
Q ss_pred eeCCCeeecccccccCCC---ceeecc-CCceeccccccccCCCCC
Q 042263 13 ISDQDLFDCPIWYQALKV---PVSQSI-NGHIICSSCLAKVNNKCP 54 (159)
Q Consensus 13 ~~~~~~l~C~iC~~~l~~---Pv~qC~-~GH~~C~~C~~~~~~~CP 54 (159)
......-.|.+|.++|.. +-++|. |+-.+=..|..++...|+
T Consensus 29 ~~f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v~~~C~ 74 (77)
T 2enn_A 29 TFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCT 74 (77)
T ss_dssp ECCSSCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSSCCSCCC
T ss_pred EcCCCCcCccccChhhccccccccCcCCCCCcCCHhHHhhCcCCCC
Confidence 344556679999888863 456665 333333355555444443
No 237
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=22.33 E-value=68 Score=21.85 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=6.5
Q ss_pred CCCCCccCc
Q 042263 52 KCPACRSCV 60 (159)
Q Consensus 52 ~CP~Cr~~~ 60 (159)
.||.|..+.
T Consensus 92 ~CP~Cgs~~ 100 (119)
T 2kdx_A 92 VCEKCHSKN 100 (119)
T ss_dssp CCSSSSSCC
T ss_pred cCccccCCC
Confidence 688887663
No 238
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.32 E-value=80 Score=15.34 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=17.4
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhh
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWK 115 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~ 115 (159)
.|+.|+. |+.... ...|..|....
T Consensus 10 k~~~C~~--C~k~f~~~~~l~~H~~~H 34 (37)
T 1p7a_A 10 KPFQCPD--CDRSFSRSDHLALHRKRH 34 (37)
T ss_dssp SSBCCTT--TCCCBSSHHHHHHHHGGG
T ss_pred CCccCCC--CCcccCcHHHHHHHHHHh
Confidence 5788985 887655 46789997653
No 239
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=22.07 E-value=69 Score=17.58 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=19.5
Q ss_pred CCCCCCCCCCcceeChhHHHhHhhhh
Q 042263 90 APCACPLLDCNFLGSASQLYLYFSWK 115 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~~~l~~H~~~~ 115 (159)
..+.||+ .-.-......|..|+...
T Consensus 4 ~~v~CPy-d~~H~i~~~~l~~Hl~kC 28 (37)
T 2vy4_A 4 EVVICPY-DSNHHMPKSSLAKHMASC 28 (37)
T ss_dssp CCEECTT-TSSCEECGGGHHHHHHHH
T ss_pred eEEECCC-CCCeEeCHHHHHHHHHHH
Confidence 4567887 467788899999998764
No 240
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=22.01 E-value=34 Score=22.78 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=20.9
Q ss_pred CCCCCCCCCcc---e-eChhHHHhHhhhhcCCc
Q 042263 91 PCACPLLDCNF---L-GSASQLYLYFSWKNGKT 119 (159)
Q Consensus 91 p~~Cp~~gC~~---~-g~~~~l~~H~~~~H~~~ 119 (159)
-+.|++ |.. . .....|.+|.++.|+..
T Consensus 45 ~i~C~V--Cr~tFm~t~~~~~L~~H~e~KHpK~ 75 (86)
T 1wvk_A 45 SIQCKV--CMQTFICTTSEVKCREHAEAKHPKA 75 (86)
T ss_dssp CEEETT--TTEEECCSSCSHHHHHHHHTCCSCC
T ss_pred CCCChH--hHhhHHhcCChHHHHHHHHcCCCCC
Confidence 368887 877 2 33578999999999875
No 241
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=21.64 E-value=58 Score=19.57 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=26.0
Q ss_pred CchhhhccC-CCCCCCCCCCCCcceeC-hhHHHhHhhhhcCC
Q 042263 79 ENKDHERNC-QCAPCACPLLDCNFLGS-ASQLYLYFSWKNGK 118 (159)
Q Consensus 79 ~~~~He~~C-~~~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~~ 118 (159)
.+..|+..= .-.++.|++..|+.... ...|..|+...+..
T Consensus 22 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~ 63 (89)
T 2wbs_A 22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63 (89)
T ss_dssp HHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCC
Confidence 455666542 23578898777887755 46788898765544
No 242
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.53 E-value=63 Score=20.41 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=23.0
Q ss_pred eCCCeeecccccccCCC----ceeeccCCceeccccccccC--CCCCCCccC
Q 042263 14 SDQDLFDCPIWYQALKV----PVSQSINGHIICSSCLAKVN--NKCPACRSC 59 (159)
Q Consensus 14 ~~~~~l~C~iC~~~l~~----Pv~qC~~GH~~C~~C~~~~~--~~CP~Cr~~ 59 (159)
..+..+.|.+|.-+..+ |...=.-|.. +..+. ..||.|..+
T Consensus 3 ~~m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~-----f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 3 IDEGKYECEACGYIYEPEKGDKFAGIPPGTP-----FVDLSDSFMCPACRSP 49 (70)
T ss_dssp CCSSCEEETTTCCEECTTTCCTTTTCCSSCC-----GGGSCTTCBCTTTCCB
T ss_pred CCCceEEeCCCCEEEcCCCCCcccCcCCCCc-----hhhCCCCCcCCCCCCC
Confidence 45678999999866542 1111112322 33332 379999875
No 243
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=21.47 E-value=33 Score=19.10 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=16.2
Q ss_pred ccccccCCCceeeccCCceecccccccc
Q 042263 22 PIWYQALKVPVSQSINGHIICSSCLAKV 49 (159)
Q Consensus 22 ~iC~~~l~~Pv~qC~~GH~~C~~C~~~~ 49 (159)
|+|.++-+.. --| .|-.||+.|+.-.
T Consensus 6 ~~C~KPC~T~-DDC-S~gw~CqaC~nfa 31 (38)
T 4cpa_I 6 PICNKPCKTH-DDC-SGAWFCQACWNSA 31 (38)
T ss_dssp TTTTCBCSSS-SSS-CCCSSCCEEETTT
T ss_pred cccCCCccCc-ccc-ccchHHHHHHhhc
Confidence 5666554432 123 3779999998754
No 244
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=21.30 E-value=39 Score=23.91 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=34.1
Q ss_pred CCccCCCceEEEeeCCCeeecccccccCCCceeeccCCceeccc
Q 042263 1 LRSCKNGSITSTISDQDLFDCPIWYQALKVPVSQSINGHIICSS 44 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~C~iC~~~l~~Pv~qC~~GH~~C~~ 44 (159)
|.-+|+...++...|+=.|+||+=+-.-+|-|.=|.-||..|..
T Consensus 16 l~ikR~S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~ 59 (122)
T 1xau_A 16 LNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVP 59 (122)
T ss_dssp ECCCTTEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEE
T ss_pred EEEEeeccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccc
Confidence 35689999999999999999998555555667777777776654
No 245
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=21.15 E-value=59 Score=17.75 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=19.8
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhcCC
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKNGK 118 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~~ 118 (159)
.|+.|+. |+.... ...|..|+...|..
T Consensus 28 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~ 55 (57)
T 1bbo_A 28 RPYHCTY--CNFSFKTKGNLTKHMKSKAHS 55 (57)
T ss_dssp CCEECSS--SSCEESSHHHHHHHHHSSSSC
T ss_pred CCccCCC--CCchhcCHHHHHHHHHHhccc
Confidence 5788986 888765 46799998776553
No 246
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.00 E-value=60 Score=24.48 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=16.2
Q ss_pred ceeecc-CCceeccccccccCCCCCCCccC
Q 042263 31 PVSQSI-NGHIICSSCLAKVNNKCPACRSC 59 (159)
Q Consensus 31 Pv~qC~-~GH~~C~~C~~~~~~~CP~Cr~~ 59 (159)
.+++|. ||+++=+ ..+ ..||.|..+
T Consensus 170 ~~~~C~~CG~i~~g--~~p--~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKG--EDF--EKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEES--SCC--SBCTTTCCB
T ss_pred cEEEECCCCCEEcC--cCC--CCCCCCCCC
Confidence 367776 7777543 122 489999875
No 247
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.74 E-value=48 Score=24.70 Aligned_cols=9 Identities=44% Similarity=1.032 Sum_probs=6.9
Q ss_pred CCCCCCccC
Q 042263 51 NKCPACRSC 59 (159)
Q Consensus 51 ~~CP~Cr~~ 59 (159)
..||.|..+
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 378988775
No 248
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=20.61 E-value=1.3e+02 Score=16.97 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=20.3
Q ss_pred CCeeecccccccCCCceeecc-CCceeccccccccCCCC
Q 042263 16 QDLFDCPIWYQALKVPVSQSI-NGHIICSSCLAKVNNKC 53 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~Pv~qC~-~GH~~C~~C~~~~~~~C 53 (159)
...-.|..|.+.|. .-++|. ||-..=..|..++...|
T Consensus 12 ~~pt~C~~C~~~l~-qG~~C~~C~~~~H~~C~~~v~~~C 49 (52)
T 1faq_A 12 LKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKVPTMC 49 (52)
T ss_dssp SSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSSSSCC
T ss_pred CCCcCCCCcccccc-cCCEeCCCCCeEChhHHhhCcCcC
Confidence 34566999998887 456664 33232234444443334
No 249
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.56 E-value=25 Score=21.89 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=6.2
Q ss_pred eeecccccccCC
Q 042263 18 LFDCPIWYQALK 29 (159)
Q Consensus 18 ~l~C~iC~~~l~ 29 (159)
-|.|..|...|.
T Consensus 41 CF~C~~C~~~L~ 52 (81)
T 1v6g_A 41 CFVCAVCRLPFP 52 (81)
T ss_dssp TSSCSSSCCCCC
T ss_pred CCccccCCCCCC
Confidence 345555555553
No 250
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.54 E-value=60 Score=18.97 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=19.9
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhhhcCC
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSWKNGK 118 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~~H~~ 118 (159)
.|+.|+. |+..... ..|..|+...+..
T Consensus 41 ~~~~C~~--C~~~f~~~~~L~~H~~~H~~~ 68 (72)
T 1x6e_A 41 KPYKCLE--CGKAFSQNSGLINHQRIHTSG 68 (72)
T ss_dssp CCEECSS--SCCEESSHHHHHHHHHHHHSS
T ss_pred CCeECCC--CCcccCCHHHHHHHHHhcCCC
Confidence 5788986 8877654 6799998776554
No 251
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=20.40 E-value=30 Score=23.37 Aligned_cols=25 Identities=8% Similarity=0.095 Sum_probs=16.1
Q ss_pred CCCCCCCccee-ChhHHHhHhhhhcC
Q 042263 93 ACPLLDCNFLG-SASQLYLYFSWKNG 117 (159)
Q Consensus 93 ~Cp~~gC~~~g-~~~~l~~H~~~~H~ 117 (159)
.|.++||.-.- ...++.+|+..+|.
T Consensus 14 ~CkWPGCe~~~ed~~~FlkHL~~eH~ 39 (93)
T 4i1l_A 14 VCKWPGCEKVFEEPEEFLKHCQADHL 39 (93)
T ss_dssp ----CCSTTTTHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCcccCHHHHHHHhhcccC
Confidence 57788887653 35688999999885
No 252
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=20.37 E-value=41 Score=18.11 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=10.3
Q ss_pred CCCCCCCCcceeC
Q 042263 92 CACPLLDCNFLGS 104 (159)
Q Consensus 92 ~~Cp~~gC~~~g~ 104 (159)
+.||.+||+=+|-
T Consensus 2 ~~CPtpGC~g~GH 14 (31)
T 2jx1_A 2 LKCPTPGCDGSGH 14 (31)
T ss_dssp CSCSCTTCCSSCC
T ss_pred CcCCCCCccccce
Confidence 4799999987763
No 253
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.35 E-value=84 Score=15.80 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=18.5
Q ss_pred CCCCCCCCCCcceeC-hhHHHhHhhhhcC
Q 042263 90 APCACPLLDCNFLGS-ASQLYLYFSWKNG 117 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~ 117 (159)
.|+.|+. |+.... ...|..|....+.
T Consensus 10 k~~~C~~--C~k~f~~~~~L~~H~~~H~~ 36 (42)
T 2ytb_A 10 KPYRCDQ--CGKAFSQKGSLIVHIRVHTG 36 (42)
T ss_dssp CSBCCTT--TTCCBSSHHHHHTTGGGTSC
T ss_pred CCeeCCC--ccchhCCHHHHHHHHHHhCC
Confidence 5788986 887655 4679999875443
No 254
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=20.27 E-value=38 Score=20.48 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=23.0
Q ss_pred CCCeeecccccccCCCceeeccC---C-ceeccccccc--c---CCCCCCCcc
Q 042263 15 DQDLFDCPIWYQALKVPVSQSIN---G-HIICSSCLAK--V---NNKCPACRS 58 (159)
Q Consensus 15 ~~~~l~C~iC~~~l~~Pv~qC~~---G-H~~C~~C~~~--~---~~~CP~Cr~ 58 (159)
..+..-| +|.++....+.+|.+ . ..|=..|..- . ...||.|+.
T Consensus 6 ~~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 3455667 899876666777763 2 2343445431 1 135777754
No 255
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.08 E-value=63 Score=20.68 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=24.2
Q ss_pred chhhhccC-CCCCCCCCCCCCcceeCh-hHHHhHhhhhcCCc
Q 042263 80 NKDHERNC-QCAPCACPLLDCNFLGSA-SQLYLYFSWKNGKT 119 (159)
Q Consensus 80 ~~~He~~C-~~~p~~Cp~~gC~~~g~~-~~l~~H~~~~H~~~ 119 (159)
+..|...- .-.|+.|+. |+..... .+|..|+...|...
T Consensus 82 l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~ 121 (124)
T 2dlq_A 82 LRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLHSGP 121 (124)
T ss_dssp HHHHHHHHSSSCSEECSS--SCCEESSHHHHHHHHHHTSSCS
T ss_pred HHHHHHHcCCCCCccCCC--ccchhCCHHHHHHHHHHHCCCC
Confidence 44554332 235678876 8877554 57888888888653
No 256
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=20.08 E-value=54 Score=20.33 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=24.7
Q ss_pred CCeeecccccccCCC-ceeecc-CCceecccccccc-------CCCCCCCccCc
Q 042263 16 QDLFDCPIWYQALKV-PVSQSI-NGHIICSSCLAKV-------NNKCPACRSCV 60 (159)
Q Consensus 16 ~~~l~C~iC~~~l~~-Pv~qC~-~GH~~C~~C~~~~-------~~~CP~Cr~~~ 60 (159)
.+...|++|...-.. .+.+|. |.-.|=..|+... ...||.|...+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 345669999987543 456665 2222223343211 13599887654
No 257
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=20.03 E-value=85 Score=19.21 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=21.0
Q ss_pred chhhhcc-CCCCCCCCCCCCCcceeC-hhHHHhHhhhhcC
Q 042263 80 NKDHERN-CQCAPCACPLLDCNFLGS-ASQLYLYFSWKNG 117 (159)
Q Consensus 80 ~~~He~~-C~~~p~~Cp~~gC~~~g~-~~~l~~H~~~~H~ 117 (159)
|..|+.. -.-.++.|++..|+.... ...|..|+...+.
T Consensus 33 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~ 72 (100)
T 2ebt_A 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72 (100)
T ss_dssp HHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCC
Confidence 4455433 122466777656766544 3567777765444
No 258
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.03 E-value=75 Score=15.39 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=17.0
Q ss_pred CCCCCCCCCCcceeCh-hHHHhHhhh
Q 042263 90 APCACPLLDCNFLGSA-SQLYLYFSW 114 (159)
Q Consensus 90 ~p~~Cp~~gC~~~g~~-~~l~~H~~~ 114 (159)
.|+.|+. |+..... ..|..|...
T Consensus 8 k~~~C~~--C~k~f~~~~~l~~H~~~ 31 (36)
T 2elv_A 8 LLYDCHI--CERKFKNELDRDRHMLV 31 (36)
T ss_dssp CCEECSS--SCCEESSHHHHHHHHTT
T ss_pred CCeECCC--CCCccCCHHHHHHHHHH
Confidence 5788876 8877654 578899765
Done!