BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042265
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment
Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS
EQUISIMILIS.
pdb|1VJ7|B Chain B, Crystal Structure Of The Bifunctional Catalytic Fragment
Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS
EQUISIMILIS
Length = 393
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 110 DFYSFPFLL---RACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQ 166
+FY ++ R + + I S + G DV+ H+Y ++ ++RD +
Sbjct: 199 EFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDVY--GRPKHIYSIYRKMRDKK 256
Query: 167 ELFDEILYRDVVSC--NTLIDGYVKAGDLAHARQLFDRMP--FRDAVS 210
+ FD+I + C T D Y G + +L+ MP F+D ++
Sbjct: 257 KRFDQIFDLIAIRCVMETQSDVYAMVG---YIHELWRPMPGRFKDYIA 301
>pdb|3ZVK|A Chain A, Crystal Structure Of Vapbc2 From Rickettsia Felis Bound To
A Dna Fragment From Their Promoter
pdb|3ZVK|B Chain B, Crystal Structure Of Vapbc2 From Rickettsia Felis Bound To
A Dna Fragment From Their Promoter
pdb|3ZVK|C Chain C, Crystal Structure Of Vapbc2 From Rickettsia Felis Bound To
A Dna Fragment From Their Promoter
pdb|3ZVK|D Chain D, Crystal Structure Of Vapbc2 From Rickettsia Felis Bound To
A Dna Fragment From Their Promoter
Length = 134
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 231 FCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLST-GLVDFYA 289
+ N ++L K + IA+ S + L EL+ G + + E NQ ++D FLS ++DF A
Sbjct: 21 YYNNLELLAKNNTIAISSIV-----LAELQYGVSKSKKKEQNQSKLDIFLSRLEIIDFSA 75
Query: 290 KCGY 293
KC +
Sbjct: 76 KCTF 79
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 183 LIDGYVKAGDLAHARQLFDR---MPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI 239
L + Y K GD A + + + + R A +W L Y + +EAI+ + ++LD
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 240 KPDNIALVSALSACARLGELEQG-KNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAI 298
+ A + +A + G+ ++ + + +EL+ +++ + G + Y K G + AI
Sbjct: 67 RSAE-AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG--NAYYKQGDYDEAI 123
Query: 299 EIFESSQE 306
E ++ + E
Sbjct: 124 EYYQKALE 131
>pdb|2B4K|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B9V|A Chain A, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|B Chain B, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|C Chain C, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|D Chain D, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|E Chain E, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|F Chain F, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|G Chain G, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|H Chain H, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|I Chain I, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|J Chain J, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|K Chain K, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|L Chain L, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|M Chain M, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|N Chain N, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|O Chain O, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|P Chain P, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
Length = 652
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 391 GRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450
GRA + AL M + +P G DVFV G + R+ ++ + + +P G +
Sbjct: 76 GRANRVPNALTMREVLPQGDDVFVEGGYI---RVFQDIRGKYGSQGDYVMTRPPHGPLNP 132
Query: 451 VLADVYANADRWEDV 465
D D W+ V
Sbjct: 133 TKTD--ETTDAWDTV 145
>pdb|1NX9|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
Length = 652
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 391 GRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450
GRA + AL M + +P G DVFV G + R+ ++ + + +P G +
Sbjct: 76 GRANRVPNALTMREVLPQGDDVFVEGGYI---RVFQDIRGKYGSQGDYVMTRPPHGPLNP 132
Query: 451 VLADVYANADRWEDV 465
D D W+ V
Sbjct: 133 TKTD--ETTDAWDTV 145
>pdb|1RYY|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|E Chain E, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|F Chain F, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|G Chain G, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|H Chain H, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
Length = 652
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 391 GRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450
GRA + AL M + +P G DVFV G + R+ ++ + + +P G +
Sbjct: 76 GRANRVPNALTMREVLPQGDDVFVEGGYI---RVFQDIRGKYGSQGDYVMTRPPHGPLNP 132
Query: 451 VLADVYANADRWEDV 465
D D W+ V
Sbjct: 133 TKTD--ETTDAWDTV 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,972,391
Number of Sequences: 62578
Number of extensions: 569330
Number of successful extensions: 1762
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1756
Number of HSP's gapped (non-prelim): 14
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)