Query 042265
Match_columns 490
No_of_seqs 638 out of 3345
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 04:34:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.4E-72 7.4E-77 579.4 55.6 475 1-490 188-735 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.6E-69 3.5E-74 546.8 54.2 473 2-490 89-572 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 8.2E-66 1.8E-70 531.9 50.2 466 2-485 88-629 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.9E-63 4E-68 505.3 49.3 398 10-420 383-797 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 4.6E-62 1E-66 495.1 48.4 461 2-482 408-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.9E-60 1.1E-64 477.8 41.3 462 1-483 124-612 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-30 3.1E-35 275.2 48.9 440 12-473 446-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-30 1.4E-34 270.2 48.2 412 57-477 443-868 (899)
9 PRK11447 cellulose synthase su 99.9 2.3E-22 5.1E-27 213.8 49.7 444 9-474 40-665 (1157)
10 PRK11447 cellulose synthase su 99.9 2.9E-22 6.2E-27 213.1 49.0 409 57-478 281-744 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 5.9E-23 1.3E-27 186.9 29.5 370 78-457 118-501 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 7E-23 1.5E-27 186.4 28.2 411 57-475 60-485 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 6E-21 1.3E-25 190.9 42.5 390 79-475 130-571 (615)
14 PRK11788 tetratricopeptide rep 99.9 1.7E-21 3.7E-26 185.2 28.9 299 154-483 43-355 (389)
15 PRK15174 Vi polysaccharide exp 99.9 8.5E-20 1.8E-24 182.0 40.0 355 57-445 17-385 (656)
16 PRK09782 bacteriophage N4 rece 99.9 8.7E-19 1.9E-23 178.8 46.9 439 11-476 58-707 (987)
17 PRK11788 tetratricopeptide rep 99.9 1.7E-20 3.8E-25 178.3 29.7 294 83-381 42-354 (389)
18 PRK10049 pgaA outer membrane p 99.9 3E-19 6.5E-24 181.9 38.7 387 81-475 20-456 (765)
19 PRK10049 pgaA outer membrane p 99.9 7.5E-19 1.6E-23 179.0 41.1 392 57-455 27-469 (765)
20 PRK09782 bacteriophage N4 rece 99.9 3.4E-18 7.4E-23 174.5 44.7 441 7-477 118-742 (987)
21 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-18 2.6E-23 174.4 39.7 391 38-446 130-576 (615)
22 PRK15174 Vi polysaccharide exp 99.9 1.1E-18 2.3E-23 174.2 38.0 329 113-476 44-382 (656)
23 KOG2002 TPR-containing nuclear 99.9 4.7E-19 1E-23 169.8 30.7 427 33-475 268-745 (1018)
24 PRK14574 hmsH outer membrane p 99.9 5.7E-17 1.2E-21 162.3 43.4 413 57-475 46-513 (822)
25 PRK14574 hmsH outer membrane p 99.8 1.9E-15 4.1E-20 151.5 43.9 422 11-454 48-525 (822)
26 KOG2003 TPR repeat-containing 99.8 1E-15 2.3E-20 135.2 30.9 410 36-461 202-709 (840)
27 KOG4422 Uncharacterized conser 99.8 2.1E-14 4.5E-19 126.2 35.9 397 9-442 127-591 (625)
28 KOG0495 HAT repeat protein [RN 99.8 2.4E-13 5.2E-18 125.7 42.5 446 16-486 425-889 (913)
29 KOG2002 TPR-containing nuclear 99.8 1.2E-14 2.6E-19 140.1 34.1 245 57-304 211-478 (1018)
30 KOG4422 Uncharacterized conser 99.7 1E-14 2.2E-19 128.1 28.1 347 32-407 204-588 (625)
31 KOG2076 RNA polymerase III tra 99.7 2.6E-14 5.7E-19 136.8 32.3 311 160-473 153-510 (895)
32 PF13429 TPR_15: Tetratricopep 99.7 3E-17 6.4E-22 147.9 9.8 258 213-474 13-276 (280)
33 KOG2003 TPR repeat-containing 99.7 7.3E-14 1.6E-18 123.7 26.3 391 82-475 207-689 (840)
34 KOG0547 Translocase of outer m 99.7 5E-13 1.1E-17 119.6 30.9 386 80-473 119-564 (606)
35 KOG1915 Cell cycle control pro 99.7 1.8E-12 4E-17 115.6 34.2 391 57-457 85-551 (677)
36 PRK10747 putative protoheme IX 99.7 1.7E-13 3.6E-18 129.3 28.8 275 190-474 97-389 (398)
37 KOG1155 Anaphase-promoting com 99.7 7.9E-13 1.7E-17 117.6 30.7 327 143-474 161-494 (559)
38 KOG0495 HAT repeat protein [RN 99.6 4.3E-11 9.2E-16 111.2 40.2 384 85-475 415-846 (913)
39 KOG1155 Anaphase-promoting com 99.6 3.7E-12 8E-17 113.5 31.7 308 57-372 176-494 (559)
40 KOG2076 RNA polymerase III tra 99.6 3.6E-11 7.9E-16 115.7 40.3 454 7-475 149-695 (895)
41 PRK10747 putative protoheme IX 99.6 2.6E-12 5.7E-17 121.2 31.5 276 159-441 97-390 (398)
42 KOG1126 DNA-binding cell divis 99.6 1.3E-13 2.9E-18 128.1 21.8 279 191-478 333-623 (638)
43 KOG1915 Cell cycle control pro 99.6 3.4E-11 7.4E-16 107.7 34.7 402 74-481 71-506 (677)
44 TIGR00540 hemY_coli hemY prote 99.6 1.3E-12 2.7E-17 124.1 27.7 127 343-472 262-396 (409)
45 KOG1126 DNA-binding cell divis 99.6 2.1E-13 4.6E-18 126.8 21.6 277 161-446 334-625 (638)
46 TIGR00540 hemY_coli hemY prote 99.6 5.3E-12 1.1E-16 119.8 31.4 278 158-440 96-398 (409)
47 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.6E-19 131.0 12.7 252 118-372 15-276 (280)
48 KOG1173 Anaphase-promoting com 99.6 7.8E-12 1.7E-16 114.2 29.9 263 207-474 243-517 (611)
49 COG2956 Predicted N-acetylgluc 99.6 2.4E-11 5.2E-16 103.5 29.4 287 125-440 49-346 (389)
50 KOG4318 Bicoid mRNA stability 99.5 7.9E-11 1.7E-15 113.0 32.6 428 18-479 11-598 (1088)
51 COG3071 HemY Uncharacterized e 99.5 4.3E-11 9.3E-16 105.1 26.8 283 159-473 97-388 (400)
52 COG2956 Predicted N-acetylgluc 99.5 2.7E-11 5.8E-16 103.2 24.4 281 87-372 46-346 (389)
53 COG3071 HemY Uncharacterized e 99.5 2.1E-10 4.4E-15 100.9 28.7 272 59-336 98-388 (400)
54 KOG1129 TPR repeat-containing 99.4 1.5E-11 3.3E-16 104.8 17.9 228 212-474 227-457 (478)
55 KOG4318 Bicoid mRNA stability 99.4 7.2E-11 1.6E-15 113.3 23.6 91 97-195 11-101 (1088)
56 KOG0547 Translocase of outer m 99.4 9.4E-10 2E-14 99.1 29.1 380 57-443 127-568 (606)
57 KOG1840 Kinesin light chain [C 99.4 4.3E-11 9.4E-16 112.6 21.6 163 311-473 285-477 (508)
58 TIGR02521 type_IV_pilW type IV 99.4 4.6E-11 1E-15 104.9 21.0 197 278-475 31-232 (234)
59 KOG2047 mRNA splicing factor [ 99.4 6.4E-09 1.4E-13 96.9 35.0 451 3-472 108-684 (835)
60 PRK12370 invasion protein regu 99.4 1.3E-10 2.9E-15 114.5 24.7 259 207-476 255-536 (553)
61 KOG1173 Anaphase-promoting com 99.4 5.2E-09 1.1E-13 96.2 31.9 410 33-456 47-533 (611)
62 KOG2376 Signal recognition par 99.4 1E-08 2.2E-13 94.7 33.3 401 57-470 24-515 (652)
63 KOG4162 Predicted calmodulin-b 99.4 4.1E-09 8.9E-14 100.3 30.8 417 33-475 321-783 (799)
64 COG3063 PilF Tfp pilus assembl 99.3 6.5E-11 1.4E-15 96.4 15.6 163 312-477 38-204 (250)
65 KOG1174 Anaphase-promoting com 99.3 1.6E-08 3.4E-13 89.5 31.0 271 176-452 231-511 (564)
66 TIGR02521 type_IV_pilW type IV 99.3 4.5E-10 9.7E-15 98.6 22.2 199 208-441 31-232 (234)
67 KOG3785 Uncharacterized conser 99.3 1.2E-08 2.7E-13 88.3 29.6 348 85-444 66-493 (557)
68 PF13041 PPR_2: PPR repeat fam 99.3 1.8E-12 3.8E-17 82.2 4.8 50 74-123 1-50 (50)
69 KOG4340 Uncharacterized conser 99.3 6.6E-09 1.4E-13 87.9 26.4 388 78-474 12-442 (459)
70 PRK12370 invasion protein regu 99.3 3.6E-10 7.8E-15 111.5 21.2 213 257-475 275-502 (553)
71 KOG1156 N-terminal acetyltrans 99.3 4.3E-08 9.3E-13 91.7 33.0 382 57-477 53-470 (700)
72 KOG2047 mRNA splicing factor [ 99.3 3.6E-07 7.9E-12 85.6 37.9 388 77-473 103-613 (835)
73 PRK11189 lipoprotein NlpI; Pro 99.3 4.1E-09 8.9E-14 95.3 25.2 218 221-446 39-270 (296)
74 KOG1174 Anaphase-promoting com 99.3 9E-08 1.9E-12 84.8 31.7 264 206-476 230-501 (564)
75 PF13041 PPR_2: PPR repeat fam 99.3 1.8E-11 3.8E-16 77.5 6.2 50 206-255 1-50 (50)
76 KOG2376 Signal recognition par 99.2 1E-07 2.2E-12 88.3 31.7 381 83-475 19-487 (652)
77 PF12569 NARP1: NMDA receptor- 99.2 9E-08 1.9E-12 91.6 32.4 402 57-471 16-516 (517)
78 KOG0548 Molecular co-chaperone 99.2 2.6E-08 5.7E-13 91.2 26.3 384 57-458 14-472 (539)
79 KOG1129 TPR repeat-containing 99.2 6.6E-10 1.4E-14 95.0 14.9 223 180-407 226-456 (478)
80 PRK11189 lipoprotein NlpI; Pro 99.2 7E-10 1.5E-14 100.3 15.8 216 257-478 40-268 (296)
81 KOG3616 Selective LIM binding 99.2 4.5E-08 9.7E-13 92.8 26.5 373 33-470 531-932 (1636)
82 PF12569 NARP1: NMDA receptor- 99.2 2.3E-08 5E-13 95.6 25.1 148 327-477 129-293 (517)
83 KOG0624 dsRNA-activated protei 99.2 6.9E-08 1.5E-12 83.5 25.1 302 145-450 37-379 (504)
84 KOG1156 N-terminal acetyltrans 99.1 7.5E-07 1.6E-11 83.7 32.5 409 8-440 52-510 (700)
85 KOG1125 TPR repeat-containing 99.1 2.4E-09 5.1E-14 98.7 15.8 219 253-474 295-526 (579)
86 KOG3617 WD40 and TPR repeat-co 99.1 3.9E-07 8.4E-12 87.6 30.9 375 34-471 725-1170(1416)
87 KOG1840 Kinesin light chain [C 99.1 1.5E-08 3.3E-13 95.7 21.3 226 147-372 200-478 (508)
88 COG3063 PilF Tfp pilus assembl 99.1 5.2E-08 1.1E-12 79.8 21.4 193 251-446 43-241 (250)
89 KOG0985 Vesicle coat protein c 99.1 6.2E-07 1.3E-11 88.1 31.1 223 207-458 1103-1325(1666)
90 KOG4162 Predicted calmodulin-b 99.1 4E-07 8.7E-12 87.1 28.8 416 3-446 329-788 (799)
91 PF04733 Coatomer_E: Coatomer 99.1 5.3E-09 1.2E-13 93.1 15.2 226 210-446 37-270 (290)
92 KOG0985 Vesicle coat protein c 99.0 3.3E-06 7E-11 83.3 33.6 276 160-466 1089-1374(1666)
93 KOG3616 Selective LIM binding 99.0 8.7E-07 1.9E-11 84.3 28.5 191 185-404 740-932 (1636)
94 PF04733 Coatomer_E: Coatomer 99.0 3.9E-09 8.5E-14 94.0 12.4 246 215-475 8-265 (290)
95 cd05804 StaR_like StaR_like; a 99.0 8.4E-07 1.8E-11 83.3 27.7 86 250-336 121-213 (355)
96 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.5E-11 82.4 28.3 258 215-475 50-336 (355)
97 KOG3617 WD40 and TPR repeat-co 99.0 4.3E-06 9.4E-11 80.7 30.8 180 33-235 755-994 (1416)
98 KOG4340 Uncharacterized conser 99.0 2.8E-07 6E-12 78.3 20.2 302 148-470 12-334 (459)
99 KOG3785 Uncharacterized conser 98.9 4.3E-06 9.2E-11 73.0 26.3 380 83-472 29-454 (557)
100 PRK04841 transcriptional regul 98.9 3.6E-06 7.9E-11 89.5 32.1 321 155-475 383-760 (903)
101 KOG0624 dsRNA-activated protei 98.9 6.6E-06 1.4E-10 71.5 27.0 311 76-409 38-370 (504)
102 KOG1914 mRNA cleavage and poly 98.9 7.4E-05 1.6E-09 69.2 33.6 395 33-443 18-503 (656)
103 TIGR03302 OM_YfiO outer membra 98.9 4E-07 8.6E-12 79.9 18.8 182 278-476 33-233 (235)
104 PRK04841 transcriptional regul 98.8 1.6E-05 3.4E-10 84.7 34.1 360 80-444 345-763 (903)
105 PRK10370 formate-dependent nit 98.8 2.1E-07 4.6E-12 78.3 15.9 118 357-476 52-174 (198)
106 KOG1070 rRNA processing protei 98.8 4.5E-07 9.7E-12 92.0 20.3 202 275-480 1455-1668(1710)
107 PLN02789 farnesyltranstransfer 98.8 2.1E-06 4.5E-11 77.7 20.6 225 211-472 40-299 (320)
108 KOG1070 rRNA processing protei 98.7 2.4E-06 5.1E-11 87.0 21.9 233 129-364 1443-1691(1710)
109 PRK15359 type III secretion sy 98.7 3.9E-07 8.4E-12 72.5 13.5 122 330-457 14-137 (144)
110 KOG1125 TPR repeat-containing 98.7 1.6E-06 3.4E-11 80.6 18.2 250 215-468 292-564 (579)
111 PRK15359 type III secretion sy 98.7 3.5E-07 7.5E-12 72.8 12.3 107 365-476 14-122 (144)
112 KOG1914 mRNA cleavage and poly 98.7 0.00024 5.2E-09 66.0 31.2 395 73-475 17-501 (656)
113 KOG1127 TPR repeat-containing 98.7 2.4E-05 5.3E-10 77.4 26.1 422 36-472 493-993 (1238)
114 PRK15179 Vi polysaccharide bio 98.7 1.9E-06 4.1E-11 85.9 19.2 139 308-450 85-226 (694)
115 KOG0548 Molecular co-chaperone 98.7 0.00011 2.4E-09 68.1 28.5 374 84-476 10-456 (539)
116 KOG1128 Uncharacterized conser 98.6 1.8E-06 3.9E-11 82.4 16.6 212 212-440 402-615 (777)
117 PRK10370 formate-dependent nit 98.6 4E-06 8.6E-11 70.6 17.3 154 285-449 23-181 (198)
118 KOG1127 TPR repeat-containing 98.6 1.2E-05 2.5E-10 79.5 22.3 372 92-471 474-909 (1238)
119 KOG1128 Uncharacterized conser 98.6 2.7E-06 5.8E-11 81.2 17.1 193 275-474 395-615 (777)
120 KOG3081 Vesicle coat complex C 98.6 2.4E-05 5.3E-10 65.8 20.6 226 210-446 43-276 (299)
121 COG5010 TadD Flp pilus assembl 98.6 5.1E-06 1.1E-10 69.9 16.7 150 316-468 73-224 (257)
122 PRK14720 transcript cleavage f 98.6 7.7E-06 1.7E-10 82.5 20.7 233 176-457 30-268 (906)
123 PLN02789 farnesyltranstransfer 98.6 6.7E-05 1.5E-09 68.0 24.3 139 179-319 39-186 (320)
124 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 53.5 4.1 32 141-172 2-33 (34)
125 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.8E-12 53.0 4.0 32 375-406 2-33 (34)
126 COG5010 TadD Flp pilus assembl 98.5 1.9E-05 4.1E-10 66.5 16.9 150 82-233 72-227 (257)
127 TIGR03302 OM_YfiO outer membra 98.5 1.4E-05 3.1E-10 70.0 17.4 179 208-407 33-230 (235)
128 TIGR02552 LcrH_SycD type III s 98.5 1.6E-06 3.4E-11 68.7 10.3 98 347-446 20-119 (135)
129 PRK15179 Vi polysaccharide bio 98.5 2.6E-05 5.6E-10 78.0 20.8 130 275-407 83-215 (694)
130 KOG3081 Vesicle coat complex C 98.4 6.2E-05 1.3E-09 63.5 18.9 240 33-292 8-255 (299)
131 PRK14720 transcript cleavage f 98.4 6E-05 1.3E-09 76.3 22.6 236 74-355 29-268 (906)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 4.7E-06 1E-10 76.9 13.6 123 346-473 171-295 (395)
133 COG4783 Putative Zn-dependent 98.4 0.00013 2.8E-09 67.1 22.4 111 218-330 316-429 (484)
134 KOG3060 Uncharacterized conser 98.4 8.9E-05 1.9E-09 62.1 19.5 127 321-450 98-229 (289)
135 PRK15363 pathogenicity island 98.4 9.6E-06 2.1E-10 63.5 12.7 94 382-475 37-132 (157)
136 COG4783 Putative Zn-dependent 98.3 5.8E-05 1.3E-09 69.2 17.9 115 356-472 318-434 (484)
137 TIGR02552 LcrH_SycD type III s 98.3 1.8E-05 3.8E-10 62.6 12.8 98 379-476 16-115 (135)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.5E-05 5.5E-10 72.2 14.8 124 180-305 172-295 (395)
139 KOG3060 Uncharacterized conser 98.3 7E-05 1.5E-09 62.7 15.6 161 312-476 55-221 (289)
140 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.3E-11 50.1 4.1 35 77-111 1-35 (35)
141 KOG2053 Mitochondrial inherita 98.2 0.0069 1.5E-07 60.1 35.5 406 58-480 22-507 (932)
142 PF09976 TPR_21: Tetratricopep 98.2 3.8E-05 8.3E-10 61.4 13.0 121 347-471 15-143 (145)
143 KOG2053 Mitochondrial inherita 98.2 0.008 1.7E-07 59.7 39.7 387 37-440 43-535 (932)
144 PF09976 TPR_21: Tetratricopep 98.2 0.00013 2.8E-09 58.3 14.9 125 312-438 15-144 (145)
145 PF13812 PPR_3: Pentatricopept 98.2 2.6E-06 5.7E-11 48.7 3.8 33 77-109 2-34 (34)
146 PF13414 TPR_11: TPR repeat; P 98.2 6.9E-06 1.5E-10 56.1 6.2 64 411-474 2-66 (69)
147 TIGR00756 PPR pentatricopeptid 98.1 6.5E-06 1.4E-10 47.3 4.4 33 210-242 2-34 (35)
148 PF13812 PPR_3: Pentatricopept 98.1 6.4E-06 1.4E-10 47.0 4.3 33 209-241 2-34 (34)
149 cd00189 TPR Tetratricopeptide 98.1 3.7E-05 8E-10 56.2 9.7 93 383-475 3-97 (100)
150 KOG2041 WD40 repeat protein [G 98.1 0.012 2.7E-07 56.8 27.3 40 417-457 1026-1068(1189)
151 TIGR02795 tol_pal_ybgF tol-pal 98.1 5.5E-05 1.2E-09 58.2 10.4 100 347-446 5-110 (119)
152 PF07079 DUF1347: Protein of u 98.1 0.0095 2.1E-07 54.6 35.2 441 6-472 15-521 (549)
153 PF13432 TPR_16: Tetratricopep 98.0 1.4E-05 2.9E-10 53.8 5.6 58 418-475 3-60 (65)
154 KOG0553 TPR repeat-containing 98.0 4.9E-05 1.1E-09 65.4 9.9 106 354-461 91-198 (304)
155 COG4235 Cytochrome c biogenesi 98.0 0.00012 2.6E-09 63.5 11.6 110 375-484 151-265 (287)
156 PF12895 Apc3: Anaphase-promot 98.0 6.5E-06 1.4E-10 58.7 3.4 77 394-471 3-83 (84)
157 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00012 2.7E-09 56.2 10.9 96 381-476 3-106 (119)
158 PLN03088 SGT1, suppressor of 98.0 6.1E-05 1.3E-09 70.0 10.3 106 351-458 9-116 (356)
159 KOG0550 Molecular chaperone (D 97.9 0.0003 6.5E-09 63.2 13.7 154 317-476 177-351 (486)
160 KOG0553 TPR repeat-containing 97.9 3.7E-05 7.9E-10 66.1 7.5 88 388-475 89-178 (304)
161 PLN03088 SGT1, suppressor of 97.9 0.00015 3.3E-09 67.4 12.3 90 315-407 8-97 (356)
162 COG4700 Uncharacterized protei 97.9 0.0024 5.1E-08 51.1 15.7 132 340-473 85-220 (251)
163 PF14559 TPR_19: Tetratricopep 97.8 2.9E-05 6.3E-10 52.8 4.7 53 423-475 2-54 (68)
164 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 4.9E-10 43.6 3.3 30 77-106 1-30 (31)
165 KOG0550 Molecular chaperone (D 97.8 0.0031 6.6E-08 57.0 17.7 266 121-406 59-347 (486)
166 cd00189 TPR Tetratricopeptide 97.8 0.00021 4.5E-09 52.0 9.2 88 354-443 10-99 (100)
167 PRK02603 photosystem I assembl 97.8 0.00021 4.6E-09 59.0 9.9 93 382-474 37-148 (172)
168 PRK10866 outer membrane biogen 97.8 0.0043 9.4E-08 54.1 18.4 173 284-473 38-239 (243)
169 PF13432 TPR_16: Tetratricopep 97.8 5.6E-05 1.2E-09 50.8 5.1 61 386-446 3-65 (65)
170 PF14938 SNAP: Soluble NSF att 97.8 0.021 4.5E-07 51.5 23.1 98 312-409 158-266 (282)
171 PF12895 Apc3: Anaphase-promot 97.8 5.5E-05 1.2E-09 53.9 5.2 81 357-437 2-83 (84)
172 KOG1538 Uncharacterized conser 97.8 0.0089 1.9E-07 57.2 20.5 86 345-440 748-845 (1081)
173 PF05843 Suf: Suppressor of fo 97.8 0.0014 3.1E-08 58.7 15.2 133 311-446 3-141 (280)
174 CHL00033 ycf3 photosystem I as 97.8 0.00022 4.8E-09 58.7 9.4 94 379-472 34-139 (168)
175 PF13371 TPR_9: Tetratricopept 97.7 0.00013 2.9E-09 50.3 6.6 57 420-476 3-59 (73)
176 PF08579 RPM2: Mitochondrial r 97.7 0.00034 7.5E-09 50.9 8.5 79 80-158 29-116 (120)
177 PF01535 PPR: PPR repeat; Int 97.7 4.9E-05 1.1E-09 42.1 3.4 29 210-238 2-30 (31)
178 PF04840 Vps16_C: Vps16, C-ter 97.7 0.037 7.9E-07 50.3 24.6 107 346-469 179-285 (319)
179 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.042 9.2E-07 50.5 29.0 393 33-445 40-535 (660)
180 KOG2280 Vacuolar assembly/sort 97.7 0.068 1.5E-06 52.4 27.8 110 344-469 684-793 (829)
181 PRK02603 photosystem I assembl 97.7 0.0011 2.3E-08 54.9 12.2 90 208-298 35-126 (172)
182 PF14938 SNAP: Soluble NSF att 97.6 0.0034 7.4E-08 56.5 15.8 204 79-309 38-268 (282)
183 PRK10153 DNA-binding transcrip 97.6 0.0022 4.8E-08 62.4 15.4 63 411-474 419-481 (517)
184 COG4700 Uncharacterized protei 97.6 0.014 3E-07 46.9 16.7 132 239-372 85-221 (251)
185 PF04840 Vps16_C: Vps16, C-ter 97.6 0.052 1.1E-06 49.4 29.4 102 285-403 184-285 (319)
186 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.7E-08 48.0 9.9 81 210-290 27-116 (120)
187 PRK10153 DNA-binding transcrip 97.6 0.0037 8E-08 60.9 16.5 141 307-450 335-490 (517)
188 PF06239 ECSIT: Evolutionarily 97.6 0.00036 7.8E-09 57.5 8.0 101 61-161 30-153 (228)
189 PRK15363 pathogenicity island 97.6 0.0015 3.3E-08 51.4 11.2 88 213-302 40-127 (157)
190 PF10037 MRP-S27: Mitochondria 97.6 0.00073 1.6E-08 63.0 11.1 97 76-172 66-164 (429)
191 PF10037 MRP-S27: Mitochondria 97.6 0.0012 2.7E-08 61.5 12.1 116 176-291 65-186 (429)
192 PF12688 TPR_5: Tetratrico pep 97.5 0.0013 2.8E-08 49.9 9.9 82 389-470 10-99 (120)
193 PRK10866 outer membrane biogen 97.5 0.021 4.5E-07 49.9 18.6 65 75-141 31-99 (243)
194 KOG2796 Uncharacterized conser 97.5 0.011 2.5E-07 50.1 15.9 138 209-348 178-323 (366)
195 PRK15331 chaperone protein Sic 97.5 0.002 4.3E-08 51.0 10.9 85 390-474 47-133 (165)
196 PF12688 TPR_5: Tetratrico pep 97.5 0.0032 7E-08 47.7 11.7 90 213-303 6-100 (120)
197 CHL00033 ycf3 photosystem I as 97.5 0.0029 6.3E-08 52.0 12.7 80 209-289 36-117 (168)
198 PF05843 Suf: Suppressor of fo 97.5 0.00087 1.9E-08 60.0 10.0 129 345-475 2-136 (280)
199 PF13431 TPR_17: Tetratricopep 97.4 0.00011 2.5E-09 41.4 2.3 33 434-466 1-33 (34)
200 PF13414 TPR_11: TPR repeat; P 97.4 0.00042 9.1E-09 47.1 5.4 64 380-443 3-69 (69)
201 PF14559 TPR_19: Tetratricopep 97.4 0.00016 3.6E-09 49.0 3.3 55 392-446 3-59 (68)
202 PF13428 TPR_14: Tetratricopep 97.4 0.00038 8.3E-09 42.2 4.2 42 413-454 2-43 (44)
203 COG3898 Uncharacterized membra 97.4 0.11 2.3E-06 47.1 26.5 244 219-475 131-392 (531)
204 PF13525 YfiO: Outer membrane 97.3 0.016 3.4E-07 49.3 15.3 49 418-466 147-198 (203)
205 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.13 2.9E-06 47.4 29.9 406 63-474 27-530 (660)
206 PRK10803 tol-pal system protei 97.3 0.0027 5.8E-08 55.9 10.4 101 346-446 145-251 (263)
207 KOG1130 Predicted G-alpha GTPa 97.3 0.0024 5.3E-08 57.5 10.0 128 346-473 197-342 (639)
208 PF03704 BTAD: Bacterial trans 97.3 0.00072 1.6E-08 54.1 6.4 71 413-483 63-138 (146)
209 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0013 2.9E-08 60.8 8.6 62 380-441 75-141 (453)
210 KOG2796 Uncharacterized conser 97.2 0.034 7.5E-07 47.3 15.6 136 310-446 178-320 (366)
211 PF06239 ECSIT: Evolutionarily 97.2 0.003 6.5E-08 52.3 9.2 89 205-293 44-153 (228)
212 KOG1130 Predicted G-alpha GTPa 97.2 0.0019 4.1E-08 58.2 8.6 252 84-336 25-342 (639)
213 KOG2041 WD40 repeat protein [G 97.2 0.11 2.3E-06 50.6 20.4 73 59-136 748-821 (1189)
214 PF13281 DUF4071: Domain of un 97.2 0.083 1.8E-06 48.6 19.1 163 281-446 144-339 (374)
215 PRK10803 tol-pal system protei 97.2 0.0048 1E-07 54.3 10.9 94 382-475 145-246 (263)
216 PF13424 TPR_12: Tetratricopep 97.2 0.0007 1.5E-08 47.4 4.6 63 412-474 5-74 (78)
217 KOG1538 Uncharacterized conser 97.1 0.045 9.8E-07 52.6 16.7 262 179-475 558-846 (1081)
218 COG3898 Uncharacterized membra 97.1 0.21 4.4E-06 45.4 25.3 284 78-373 84-392 (531)
219 COG4235 Cytochrome c biogenesi 97.1 0.025 5.5E-07 49.4 14.1 111 341-454 153-268 (287)
220 KOG1258 mRNA processing protei 97.1 0.31 6.6E-06 46.9 26.6 179 277-460 296-489 (577)
221 PF13371 TPR_9: Tetratricopept 97.0 0.0024 5.2E-08 43.9 5.9 62 388-449 3-66 (73)
222 COG4105 ComL DNA uptake lipopr 96.9 0.21 4.6E-06 42.8 18.2 168 289-473 45-231 (254)
223 KOG0543 FKBP-type peptidyl-pro 96.9 0.015 3.4E-07 52.7 11.6 95 381-475 258-355 (397)
224 KOG2114 Vacuolar assembly/sort 96.9 0.58 1.3E-05 46.9 25.0 166 57-234 346-516 (933)
225 PF10300 DUF3808: Protein of u 96.7 0.1 2.2E-06 50.6 16.6 159 314-474 193-375 (468)
226 PF13525 YfiO: Outer membrane 96.7 0.23 5.1E-06 42.1 17.0 60 213-272 10-71 (203)
227 KOG0543 FKBP-type peptidyl-pro 96.7 0.0091 2E-07 54.2 8.5 64 412-475 257-320 (397)
228 PF13512 TPR_18: Tetratricopep 96.6 0.047 1E-06 42.3 10.6 86 390-475 20-128 (142)
229 KOG2280 Vacuolar assembly/sort 96.6 0.91 2E-05 45.0 26.5 382 17-436 368-794 (829)
230 KOG3941 Intermediate in Toll s 96.4 0.019 4.2E-07 49.3 8.3 113 60-172 49-185 (406)
231 COG1729 Uncharacterized protei 96.3 0.027 5.9E-07 48.6 8.4 99 346-447 144-250 (262)
232 PF12921 ATP13: Mitochondrial 96.3 0.054 1.2E-06 41.6 9.3 52 339-390 47-98 (126)
233 PF02259 FAT: FAT domain; Int 96.3 1 2.2E-05 42.1 20.6 149 308-459 145-305 (352)
234 PRK11906 transcriptional regul 96.2 0.086 1.9E-06 49.3 11.7 158 310-470 252-431 (458)
235 COG3118 Thioredoxin domain-con 96.2 0.55 1.2E-05 41.2 15.7 144 319-464 144-290 (304)
236 PF07719 TPR_2: Tetratricopept 96.2 0.019 4E-07 32.2 4.9 33 413-445 2-34 (34)
237 PRK15331 chaperone protein Sic 96.2 0.1 2.3E-06 41.5 10.4 89 319-410 47-135 (165)
238 PF13281 DUF4071: Domain of un 96.1 0.94 2E-05 41.9 18.0 29 344-372 305-333 (374)
239 PF00515 TPR_1: Tetratricopept 96.1 0.014 3.1E-07 32.8 4.2 32 413-444 2-33 (34)
240 PF03704 BTAD: Bacterial trans 96.1 0.057 1.2E-06 43.1 9.2 71 210-281 64-139 (146)
241 PF04053 Coatomer_WDAD: Coatom 96.1 0.41 8.8E-06 45.9 16.2 132 146-302 295-426 (443)
242 PF13424 TPR_12: Tetratricopep 96.1 0.02 4.3E-07 39.9 5.7 59 382-440 7-74 (78)
243 PF09205 DUF1955: Domain of un 96.1 0.43 9.4E-06 36.2 13.2 141 319-478 12-152 (161)
244 COG1729 Uncharacterized protei 96.0 0.25 5.4E-06 42.8 12.9 57 418-474 184-243 (262)
245 KOG1941 Acetylcholine receptor 95.9 0.55 1.2E-05 42.3 14.8 122 350-471 128-271 (518)
246 COG3118 Thioredoxin domain-con 95.9 0.39 8.4E-06 42.1 13.6 129 343-475 134-265 (304)
247 KOG2114 Vacuolar assembly/sort 95.9 1.1 2.4E-05 45.0 18.0 176 180-370 337-516 (933)
248 PF12921 ATP13: Mitochondrial 95.9 0.12 2.6E-06 39.7 9.5 49 238-286 47-96 (126)
249 PF13512 TPR_18: Tetratricopep 95.9 0.27 5.8E-06 38.3 11.2 115 316-446 17-133 (142)
250 smart00299 CLH Clathrin heavy 95.8 0.68 1.5E-05 36.5 16.1 86 114-203 10-95 (140)
251 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.08 1.7E-06 49.5 9.3 62 343-407 74-139 (453)
252 KOG1258 mRNA processing protei 95.7 2.2 4.7E-05 41.4 28.5 81 12-105 94-180 (577)
253 PRK11619 lytic murein transgly 95.7 2.8 6E-05 42.5 31.1 52 387-438 319-372 (644)
254 KOG1941 Acetylcholine receptor 95.7 1.1 2.3E-05 40.5 15.5 122 284-405 128-271 (518)
255 KOG1585 Protein required for f 95.6 1.2 2.6E-05 37.9 16.1 49 419-468 197-249 (308)
256 PF04053 Coatomer_WDAD: Coatom 95.6 0.82 1.8E-05 43.8 15.8 158 83-268 268-427 (443)
257 PRK11906 transcriptional regul 95.5 0.84 1.8E-05 43.0 15.2 144 293-440 273-435 (458)
258 COG4649 Uncharacterized protei 95.5 0.59 1.3E-05 37.4 12.1 129 310-440 60-195 (221)
259 PF10300 DUF3808: Protein of u 95.5 2.7 5.8E-05 41.0 20.6 81 192-272 248-334 (468)
260 KOG2610 Uncharacterized conser 95.5 0.35 7.7E-06 43.0 11.8 48 356-405 187-234 (491)
261 KOG4555 TPR repeat-containing 95.4 0.085 1.8E-06 39.8 6.8 89 353-443 52-146 (175)
262 PF07035 Mic1: Colon cancer-as 95.4 1.2 2.5E-05 36.1 13.8 30 99-128 17-46 (167)
263 KOG2610 Uncharacterized conser 95.4 0.19 4.2E-06 44.6 10.0 160 320-482 114-283 (491)
264 PF04184 ST7: ST7 protein; In 95.3 2.2 4.7E-05 40.6 17.0 146 213-372 173-323 (539)
265 KOG0890 Protein kinase of the 95.3 7 0.00015 44.6 24.3 310 151-477 1388-1733(2382)
266 COG4785 NlpI Lipoprotein NlpI, 95.3 1.3 2.9E-05 36.9 13.9 158 309-474 99-265 (297)
267 COG0457 NrfG FOG: TPR repeat [ 95.3 1.7 3.7E-05 37.3 25.2 221 222-444 37-268 (291)
268 PF09205 DUF1955: Domain of un 95.2 0.83 1.8E-05 34.8 11.4 137 123-274 14-151 (161)
269 KOG4234 TPR repeat-containing 95.2 0.072 1.6E-06 43.5 6.4 100 353-454 104-210 (271)
270 KOG3941 Intermediate in Toll s 95.2 0.18 3.8E-06 43.7 8.9 97 197-293 54-173 (406)
271 COG0457 NrfG FOG: TPR repeat [ 95.2 1.8 3.9E-05 37.1 25.3 216 257-474 37-264 (291)
272 COG4785 NlpI Lipoprotein NlpI, 95.1 1.6 3.5E-05 36.5 13.9 178 257-442 79-267 (297)
273 smart00299 CLH Clathrin heavy 95.1 1.3 2.7E-05 34.9 14.8 126 312-457 10-136 (140)
274 KOG1920 IkappaB kinase complex 95.0 5.7 0.00012 42.0 22.1 30 143-173 788-819 (1265)
275 PF08631 SPO22: Meiosis protei 95.0 2.6 5.5E-05 37.9 21.2 18 422-439 256-273 (278)
276 KOG1585 Protein required for f 94.9 2.1 4.5E-05 36.6 14.1 54 312-366 193-249 (308)
277 COG3629 DnrI DNA-binding trans 94.9 0.16 3.4E-06 44.7 8.1 60 414-473 155-214 (280)
278 PRK09687 putative lyase; Provi 94.7 3 6.6E-05 37.4 24.3 25 418-443 241-265 (280)
279 PF04184 ST7: ST7 protein; In 94.7 1.3 2.9E-05 41.9 13.8 56 385-440 264-323 (539)
280 COG2976 Uncharacterized protei 94.6 0.26 5.6E-06 40.3 8.0 55 388-442 134-189 (207)
281 PF13181 TPR_8: Tetratricopept 94.4 0.1 2.2E-06 29.2 4.0 31 414-444 3-33 (34)
282 KOG1920 IkappaB kinase complex 94.4 8.1 0.00018 40.9 21.8 140 152-307 914-1055(1265)
283 KOG4555 TPR repeat-containing 94.3 0.18 3.8E-06 38.1 6.0 91 387-477 50-146 (175)
284 COG4649 Uncharacterized protei 94.2 0.74 1.6E-05 36.9 9.6 118 289-407 69-194 (221)
285 PF02259 FAT: FAT domain; Int 94.1 3.7 7.9E-05 38.4 16.4 64 411-474 145-212 (352)
286 PF13176 TPR_7: Tetratricopept 94.1 0.1 2.3E-06 29.7 3.7 26 448-473 1-26 (36)
287 PRK09687 putative lyase; Provi 93.9 4.6 0.0001 36.2 23.8 218 72-305 33-261 (280)
288 COG1747 Uncharacterized N-term 93.9 6.2 0.00013 37.7 21.0 176 275-457 63-250 (711)
289 PF13176 TPR_7: Tetratricopept 93.9 0.13 2.8E-06 29.3 3.8 27 414-440 1-27 (36)
290 PF07079 DUF1347: Protein of u 93.9 5.8 0.00013 37.3 27.0 129 57-189 18-179 (549)
291 PF08631 SPO22: Meiosis protei 93.8 4.7 0.0001 36.2 22.4 16 319-334 256-271 (278)
292 TIGR02561 HrpB1_HrpK type III 93.6 0.61 1.3E-05 36.4 8.0 67 393-461 23-93 (153)
293 PF00637 Clathrin: Region in C 93.6 0.12 2.5E-06 41.1 4.4 86 116-204 12-97 (143)
294 PF13428 TPR_14: Tetratricopep 93.5 0.2 4.3E-06 30.1 4.3 26 115-140 5-30 (44)
295 PF09613 HrpB1_HrpK: Bacterial 93.4 0.75 1.6E-05 36.6 8.4 81 381-461 8-93 (160)
296 PRK15180 Vi polysaccharide bio 93.3 1.3 2.9E-05 41.5 11.1 127 320-450 300-429 (831)
297 KOG1464 COP9 signalosome, subu 93.2 5.3 0.00012 34.7 17.4 151 280-437 147-328 (440)
298 PF10602 RPN7: 26S proteasome 93.1 1.2 2.5E-05 36.8 9.6 92 381-472 37-139 (177)
299 PF07035 Mic1: Colon cancer-as 93.0 4.1 8.8E-05 33.0 13.2 134 131-272 14-149 (167)
300 COG2976 Uncharacterized protei 93.0 4.5 9.7E-05 33.4 13.3 90 386-476 95-189 (207)
301 KOG2066 Vacuolar assembly/sort 93.0 11 0.00024 38.0 24.4 148 82-236 362-533 (846)
302 PF13374 TPR_10: Tetratricopep 92.9 0.29 6.3E-06 28.8 4.4 28 413-440 3-30 (42)
303 PF13174 TPR_6: Tetratricopept 92.8 0.26 5.7E-06 27.1 3.9 28 417-444 5-32 (33)
304 KOG2066 Vacuolar assembly/sort 92.8 12 0.00026 37.8 26.1 167 120-308 365-535 (846)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 92.5 0.95 2.1E-05 32.2 6.9 63 324-388 22-84 (103)
306 COG2909 MalT ATP-dependent tra 92.2 16 0.00034 37.7 26.5 217 252-471 424-684 (894)
307 PF10602 RPN7: 26S proteasome 92.1 2.2 4.7E-05 35.2 10.0 63 210-272 38-102 (177)
308 PF02284 COX5A: Cytochrome c o 92.1 0.87 1.9E-05 32.8 6.4 62 326-389 27-88 (108)
309 KOG1550 Extracellular protein 92.0 15 0.00032 36.9 21.9 273 193-475 228-538 (552)
310 KOG4570 Uncharacterized conser 91.3 0.67 1.4E-05 40.9 6.2 51 91-141 115-165 (418)
311 COG4105 ComL DNA uptake lipopr 90.9 10 0.00022 33.0 21.8 61 386-446 173-238 (254)
312 PF13170 DUF4003: Protein of u 90.9 11 0.00024 34.1 13.9 61 225-285 160-224 (297)
313 PF11207 DUF2989: Protein of u 90.7 1.8 3.8E-05 36.0 7.9 75 390-466 117-198 (203)
314 KOG4648 Uncharacterized conser 90.6 0.55 1.2E-05 41.9 5.2 96 351-448 104-201 (536)
315 PF07719 TPR_2: Tetratricopept 90.6 0.39 8.4E-06 26.6 3.1 29 447-475 2-30 (34)
316 KOG0545 Aryl-hydrocarbon recep 90.4 2.4 5.2E-05 36.2 8.4 63 413-475 231-293 (329)
317 COG3629 DnrI DNA-binding trans 90.3 3.2 6.9E-05 36.8 9.7 75 210-285 155-234 (280)
318 PF13431 TPR_17: Tetratricopep 90.3 0.43 9.2E-06 26.7 2.9 31 135-166 3-33 (34)
319 KOG4648 Uncharacterized conser 90.1 1.2 2.5E-05 40.0 6.8 55 316-372 104-159 (536)
320 PF09613 HrpB1_HrpK: Bacterial 90.0 8.7 0.00019 30.7 11.8 107 355-466 21-129 (160)
321 PF07721 TPR_4: Tetratricopept 89.8 0.52 1.1E-05 24.4 2.9 23 448-470 3-25 (26)
322 PRK13800 putative oxidoreducta 89.8 32 0.00069 37.0 25.5 245 109-372 633-880 (897)
323 PRK13800 putative oxidoreducta 89.7 32 0.0007 37.0 25.4 47 172-218 630-676 (897)
324 PF00637 Clathrin: Region in C 89.7 0.42 9.1E-06 37.9 3.6 129 81-223 12-140 (143)
325 PF00515 TPR_1: Tetratricopept 89.5 0.76 1.6E-05 25.5 3.6 29 447-475 2-30 (34)
326 PF13374 TPR_10: Tetratricopep 89.1 0.76 1.7E-05 26.8 3.7 28 447-474 3-30 (42)
327 KOG1550 Extracellular protein 89.0 21 0.00046 35.8 15.6 114 359-478 308-429 (552)
328 COG1747 Uncharacterized N-term 88.9 23 0.00049 34.1 19.8 174 207-389 65-248 (711)
329 PF13174 TPR_6: Tetratricopept 88.8 0.56 1.2E-05 25.7 2.8 28 448-475 2-29 (33)
330 cd00923 Cyt_c_Oxidase_Va Cytoc 88.8 2.8 6E-05 30.0 6.5 59 94-153 25-83 (103)
331 smart00028 TPR Tetratricopepti 88.7 0.86 1.9E-05 24.2 3.6 29 415-443 4-32 (34)
332 KOG1586 Protein required for f 88.7 14 0.00031 31.5 12.8 15 255-269 26-40 (288)
333 KOG0276 Vesicle coat complex C 88.7 4.7 0.0001 39.3 10.0 140 73-238 578-722 (794)
334 PF06552 TOM20_plant: Plant sp 88.6 0.95 2.1E-05 36.7 4.7 34 428-461 51-84 (186)
335 PF14853 Fis1_TPR_C: Fis1 C-te 88.5 1.5 3.3E-05 27.5 4.7 33 416-448 5-37 (53)
336 PF13181 TPR_8: Tetratricopept 88.3 1.1 2.4E-05 24.8 3.7 29 447-475 2-30 (34)
337 KOG4234 TPR repeat-containing 88.2 6 0.00013 32.8 9.0 87 318-407 104-195 (271)
338 PRK15180 Vi polysaccharide bio 88.0 4.4 9.5E-05 38.3 9.1 120 285-407 296-418 (831)
339 KOG4570 Uncharacterized conser 87.7 6.7 0.00015 35.0 9.6 100 273-373 59-164 (418)
340 COG2909 MalT ATP-dependent tra 87.5 39 0.00084 35.1 20.7 211 156-369 425-684 (894)
341 PRK12798 chemotaxis protein; R 87.3 26 0.00056 32.9 20.2 185 291-478 125-327 (421)
342 KOG0890 Protein kinase of the 87.3 66 0.0014 37.5 24.3 306 116-440 1388-1730(2382)
343 PF11207 DUF2989: Protein of u 87.1 7.2 0.00016 32.5 9.0 73 225-298 123-198 (203)
344 PRK10941 hypothetical protein; 86.7 4.1 8.8E-05 36.1 8.0 62 414-475 183-244 (269)
345 PF10345 Cohesin_load: Cohesin 86.2 42 0.00091 34.2 27.0 84 89-172 152-251 (608)
346 TIGR03504 FimV_Cterm FimV C-te 85.8 1.4 3E-05 26.4 3.3 27 450-476 3-29 (44)
347 COG3947 Response regulator con 85.4 3.3 7.1E-05 36.4 6.5 60 414-473 281-340 (361)
348 PF02284 COX5A: Cytochrome c o 85.3 7.1 0.00015 28.3 7.0 60 226-286 28-87 (108)
349 KOG4279 Serine/threonine prote 85.0 7.8 0.00017 38.9 9.5 189 208-446 201-400 (1226)
350 KOG4642 Chaperone-dependent E3 84.8 4 8.7E-05 34.8 6.6 79 394-472 24-104 (284)
351 COG4455 ImpE Protein of avirul 84.8 4.3 9.3E-05 34.1 6.6 64 383-446 4-69 (273)
352 PF14561 TPR_20: Tetratricopep 84.7 4 8.6E-05 29.2 5.8 53 411-463 21-75 (90)
353 TIGR02508 type_III_yscG type I 84.2 14 0.00029 26.8 8.8 58 186-246 48-105 (115)
354 KOG1308 Hsp70-interacting prot 83.5 0.67 1.5E-05 41.5 1.7 57 419-475 155-211 (377)
355 PF06552 TOM20_plant: Plant sp 83.4 7.6 0.00016 31.7 7.4 60 411-477 68-138 (186)
356 PF13170 DUF4003: Protein of u 82.5 38 0.00082 30.7 18.8 113 326-440 79-210 (297)
357 PF13762 MNE1: Mitochondrial s 82.3 15 0.00033 28.9 8.5 95 17-124 22-128 (145)
358 KOG4077 Cytochrome c oxidase, 81.2 9.7 0.00021 28.8 6.7 60 327-388 67-126 (149)
359 KOG3364 Membrane protein invol 81.1 23 0.00051 27.4 8.8 70 378-447 30-106 (149)
360 COG4455 ImpE Protein of avirul 81.1 12 0.00026 31.6 7.8 59 80-139 5-63 (273)
361 cd08819 CARD_MDA5_2 Caspase ac 81.1 9.1 0.0002 26.9 6.1 65 17-96 22-86 (88)
362 KOG0276 Vesicle coat complex C 80.9 13 0.00029 36.4 9.1 78 37-138 616-693 (794)
363 KOG2471 TPR repeat-containing 80.6 21 0.00045 34.2 10.1 101 288-391 250-380 (696)
364 KOG1464 COP9 signalosome, subu 80.2 40 0.00088 29.5 17.8 59 212-270 149-218 (440)
365 PRK13342 recombination factor 80.0 58 0.0012 31.3 13.6 115 127-256 153-278 (413)
366 TIGR02508 type_III_yscG type I 79.8 21 0.00045 25.9 9.0 85 260-348 22-106 (115)
367 TIGR03504 FimV_Cterm FimV C-te 79.1 4.9 0.00011 24.1 3.8 26 213-238 4-29 (44)
368 smart00386 HAT HAT (Half-A-TPR 79.1 5.2 0.00011 21.4 3.9 30 426-455 1-30 (33)
369 PF07163 Pex26: Pex26 protein; 78.3 27 0.00059 30.8 9.4 84 284-367 89-181 (309)
370 PF10345 Cohesin_load: Cohesin 78.3 84 0.0018 32.1 24.2 48 423-470 372-428 (608)
371 KOG4507 Uncharacterized conser 77.5 6.9 0.00015 38.1 6.2 96 357-453 620-717 (886)
372 KOG2471 TPR repeat-containing 76.8 69 0.0015 30.9 12.2 119 319-459 250-382 (696)
373 cd08819 CARD_MDA5_2 Caspase ac 76.4 24 0.00052 24.9 7.1 65 130-196 21-85 (88)
374 KOG2063 Vacuolar assembly/sort 76.4 1.1E+02 0.0024 32.4 15.3 25 79-103 507-531 (877)
375 PF07163 Pex26: Pex26 protein; 76.4 45 0.00098 29.5 10.2 86 214-301 89-181 (309)
376 KOG0551 Hsp90 co-chaperone CNS 75.6 11 0.00023 34.1 6.5 87 385-471 86-178 (390)
377 PF04190 DUF410: Protein of un 75.1 60 0.0013 28.8 16.2 27 176-202 89-115 (260)
378 PF09986 DUF2225: Uncharacteri 74.8 31 0.00066 29.5 9.0 66 413-478 119-197 (214)
379 COG3947 Response regulator con 74.6 64 0.0014 28.8 14.7 80 91-172 102-192 (361)
380 PF10579 Rapsyn_N: Rapsyn N-te 74.5 4 8.7E-05 28.0 2.9 45 424-468 18-65 (80)
381 TIGR02561 HrpB1_HrpK type III 74.0 42 0.00092 26.6 12.3 25 211-235 96-120 (153)
382 PF07575 Nucleopor_Nup85: Nup8 74.0 1E+02 0.0023 31.1 20.8 60 33-103 111-175 (566)
383 PF04190 DUF410: Protein of un 73.9 64 0.0014 28.6 14.9 141 218-373 20-170 (260)
384 COG0790 FOG: TPR repeat, SEL1 73.8 69 0.0015 28.9 18.9 77 398-477 173-268 (292)
385 KOG2396 HAT (Half-A-TPR) repea 73.8 90 0.002 30.3 31.4 239 226-473 300-557 (568)
386 PF08311 Mad3_BUB1_I: Mad3/BUB 73.6 32 0.00068 26.5 8.1 42 430-471 81-124 (126)
387 COG5159 RPN6 26S proteasome re 73.0 36 0.00077 30.2 8.8 50 315-364 9-65 (421)
388 KOG2063 Vacuolar assembly/sort 73.0 1.3E+02 0.0029 31.8 20.8 49 57-105 319-375 (877)
389 KOG4507 Uncharacterized conser 72.0 26 0.00056 34.4 8.5 133 341-475 568-705 (886)
390 TIGR02270 conserved hypothetic 71.2 99 0.0022 29.6 24.7 43 145-187 99-141 (410)
391 KOG4814 Uncharacterized conser 70.3 49 0.0011 33.0 9.9 85 391-475 365-457 (872)
392 PF13762 MNE1: Mitochondrial s 69.9 49 0.0011 26.1 8.3 84 78-161 41-130 (145)
393 PRK11619 lytic murein transgly 69.7 1.4E+02 0.003 30.7 40.5 205 221-438 254-465 (644)
394 PF08424 NRDE-2: NRDE-2, neces 69.2 95 0.0021 28.6 15.0 115 361-477 48-185 (321)
395 KOG3824 Huntingtin interacting 68.4 11 0.00023 33.6 4.8 46 424-469 128-173 (472)
396 KOG4077 Cytochrome c oxidase, 67.7 27 0.00059 26.6 6.1 58 95-153 68-125 (149)
397 PF09670 Cas_Cas02710: CRISPR- 67.6 1.1E+02 0.0025 28.9 12.0 51 321-372 143-197 (379)
398 PF14561 TPR_20: Tetratricopep 67.3 43 0.00093 23.9 7.7 40 435-474 11-50 (90)
399 PF09477 Type_III_YscG: Bacter 67.2 48 0.001 24.5 8.4 77 259-338 22-98 (116)
400 PF12862 Apc5: Anaphase-promot 67.1 22 0.00049 25.5 5.7 53 422-474 8-69 (94)
401 KOG1586 Protein required for f 66.7 85 0.0019 27.1 14.4 20 426-445 209-228 (288)
402 PF10579 Rapsyn_N: Rapsyn N-te 66.5 19 0.00041 24.8 4.7 46 356-401 18-64 (80)
403 PF10255 Paf67: RNA polymerase 66.1 37 0.00079 32.2 8.2 56 385-440 127-192 (404)
404 KOG0686 COP9 signalosome, subu 65.8 1.2E+02 0.0026 28.6 13.1 56 180-235 153-214 (466)
405 KOG2300 Uncharacterized conser 65.7 1.3E+02 0.0029 29.0 30.1 76 59-135 61-151 (629)
406 PF10366 Vps39_1: Vacuolar sor 64.4 39 0.00086 25.1 6.6 28 77-104 40-67 (108)
407 PF04910 Tcf25: Transcriptiona 64.3 1.3E+02 0.0028 28.3 13.1 120 343-474 39-167 (360)
408 KOG4567 GTPase-activating prot 63.9 1E+02 0.0022 27.9 9.8 43 330-372 264-306 (370)
409 PF14669 Asp_Glu_race_2: Putat 63.5 87 0.0019 26.1 15.3 93 201-303 100-206 (233)
410 PF11846 DUF3366: Domain of un 63.4 28 0.00061 29.2 6.5 36 408-443 140-175 (193)
411 COG0790 FOG: TPR repeat, SEL1 63.0 1.2E+02 0.0025 27.4 17.1 129 293-426 92-236 (292)
412 PF11848 DUF3368: Domain of un 62.7 27 0.00059 21.4 4.6 33 122-154 13-45 (48)
413 PRK13342 recombination factor 62.5 1.5E+02 0.0033 28.5 15.2 101 240-358 173-279 (413)
414 KOG0376 Serine-threonine phosp 62.2 6 0.00013 37.5 2.3 95 351-448 11-108 (476)
415 PF12968 DUF3856: Domain of Un 62.1 67 0.0015 24.3 8.5 62 411-472 54-126 (144)
416 KOG2422 Uncharacterized conser 62.1 1.4E+02 0.0031 29.6 11.1 50 321-371 250-311 (665)
417 PF10366 Vps39_1: Vacuolar sor 61.7 51 0.0011 24.5 6.8 27 311-337 41-67 (108)
418 PF11663 Toxin_YhaV: Toxin wit 61.2 13 0.00029 28.6 3.6 34 86-121 105-138 (140)
419 COG4976 Predicted methyltransf 61.1 17 0.00036 31.1 4.4 58 390-447 5-64 (287)
420 PF14863 Alkyl_sulf_dimr: Alky 60.1 53 0.0012 25.9 6.9 62 397-461 58-119 (141)
421 PF11838 ERAP1_C: ERAP1-like C 60.0 1.4E+02 0.003 27.3 17.1 81 360-440 146-229 (324)
422 PF10255 Paf67: RNA polymerase 59.3 77 0.0017 30.1 9.0 56 180-235 125-191 (404)
423 KOG2396 HAT (Half-A-TPR) repea 59.2 1.8E+02 0.0039 28.4 27.2 102 341-445 456-564 (568)
424 PRK10564 maltose regulon perip 58.3 21 0.00046 31.9 4.9 37 210-246 259-295 (303)
425 PF14853 Fis1_TPR_C: Fis1 C-te 56.3 23 0.00049 22.3 3.5 28 448-475 3-30 (53)
426 cd08326 CARD_CASP9 Caspase act 56.0 36 0.00078 23.9 4.9 32 160-191 44-75 (84)
427 PF12069 DUF3549: Protein of u 55.2 1.7E+02 0.0038 27.0 10.4 133 41-185 172-306 (340)
428 cd08326 CARD_CASP9 Caspase act 54.0 41 0.0009 23.6 4.9 63 16-95 18-80 (84)
429 PF11817 Foie-gras_1: Foie gra 53.6 1.2E+02 0.0026 26.7 9.0 53 417-469 183-241 (247)
430 KOG0991 Replication factor C, 53.6 1.5E+02 0.0033 25.7 9.4 43 301-344 231-273 (333)
431 cd00280 TRFH Telomeric Repeat 53.5 76 0.0017 26.2 6.8 14 360-373 85-98 (200)
432 PF13934 ELYS: Nuclear pore co 53.2 1.5E+02 0.0033 25.6 10.4 111 114-230 79-198 (226)
433 PF00244 14-3-3: 14-3-3 protei 53.0 1.6E+02 0.0034 25.7 10.6 159 214-372 7-197 (236)
434 PF04910 Tcf25: Transcriptiona 53.0 2E+02 0.0044 27.0 15.0 127 143-271 37-167 (360)
435 cd00280 TRFH Telomeric Repeat 53.0 79 0.0017 26.1 6.8 48 325-372 85-139 (200)
436 KOG2297 Predicted translation 52.6 1.8E+02 0.0039 26.3 9.6 149 62-229 184-342 (412)
437 PF11846 DUF3366: Domain of un 52.5 71 0.0015 26.7 7.2 46 429-475 128-173 (193)
438 PF07720 TPR_3: Tetratricopept 52.4 42 0.00091 19.0 4.8 16 419-434 8-23 (36)
439 KOG0687 26S proteasome regulat 52.3 1.9E+02 0.0041 26.5 10.9 94 345-440 105-209 (393)
440 KOG3364 Membrane protein invol 52.2 79 0.0017 24.6 6.3 67 409-475 29-100 (149)
441 KOG4521 Nuclear pore complex, 52.0 3.6E+02 0.0078 29.6 14.5 121 346-468 985-1124(1480)
442 COG5191 Uncharacterized conser 51.6 31 0.00068 30.9 4.8 80 375-454 102-184 (435)
443 PF15469 Sec5: Exocyst complex 51.6 48 0.001 27.5 5.9 28 460-487 153-180 (182)
444 PRK10941 hypothetical protein; 51.4 1.8E+02 0.0039 26.0 9.7 74 312-387 184-258 (269)
445 PF09477 Type_III_YscG: Bacter 51.3 99 0.0021 22.9 9.5 39 126-165 21-59 (116)
446 KOG1498 26S proteasome regulat 50.8 2.2E+02 0.0048 26.8 13.0 97 384-480 135-246 (439)
447 PF14689 SPOB_a: Sensor_kinase 50.5 41 0.00089 21.9 4.2 27 146-172 23-49 (62)
448 COG0735 Fur Fe2+/Zn2+ uptake r 50.5 90 0.002 24.7 7.0 63 98-161 8-70 (145)
449 PF11848 DUF3368: Domain of un 50.4 57 0.0012 19.9 5.2 32 219-250 13-44 (48)
450 KOG2034 Vacuolar sorting prote 50.1 3.4E+02 0.0073 28.7 22.4 287 154-476 366-658 (911)
451 KOG4642 Chaperone-dependent E3 49.9 1.8E+02 0.0038 25.4 9.1 50 220-271 22-72 (284)
452 PF08311 Mad3_BUB1_I: Mad3/BUB 49.4 1.2E+02 0.0026 23.3 8.1 41 398-438 81-125 (126)
453 COG4976 Predicted methyltransf 48.6 38 0.00082 29.0 4.6 52 354-407 5-56 (287)
454 PF06957 COPI_C: Coatomer (COP 48.6 1E+02 0.0022 29.5 8.0 45 402-446 288-334 (422)
455 PF08424 NRDE-2: NRDE-2, neces 48.4 2.2E+02 0.0048 26.2 12.8 112 326-440 48-182 (321)
456 PF11663 Toxin_YhaV: Toxin wit 47.3 26 0.00056 27.1 3.2 33 218-252 105-137 (140)
457 PRK10564 maltose regulon perip 47.1 44 0.00096 30.0 5.1 39 311-349 259-297 (303)
458 PF10155 DUF2363: Uncharacteri 46.5 1.3E+02 0.0029 23.1 10.4 111 59-172 3-124 (126)
459 PF04097 Nic96: Nup93/Nic96; 46.5 3.4E+02 0.0075 27.8 21.3 28 345-372 325-355 (613)
460 KOG1498 26S proteasome regulat 46.4 2.6E+02 0.0056 26.4 15.2 89 315-410 137-242 (439)
461 COG4941 Predicted RNA polymera 44.4 2.6E+02 0.0056 25.8 11.7 117 325-446 272-399 (415)
462 KOG4567 GTPase-activating prot 44.3 2.5E+02 0.0054 25.5 9.4 87 131-218 263-359 (370)
463 COG2912 Uncharacterized conser 44.0 88 0.0019 27.7 6.4 54 420-473 189-242 (269)
464 KOG0292 Vesicle coat complex C 43.9 2.1E+02 0.0045 30.2 9.5 158 283-475 625-782 (1202)
465 COG5159 RPN6 26S proteasome re 43.4 2.5E+02 0.0053 25.2 12.6 50 283-332 8-68 (421)
466 KOG2908 26S proteasome regulat 43.2 2.7E+02 0.0059 25.7 10.0 104 364-467 58-178 (380)
467 PRK14956 DNA polymerase III su 43.2 3.2E+02 0.0069 26.9 10.5 37 110-146 247-283 (484)
468 PF09454 Vps23_core: Vps23 cor 42.9 32 0.00069 22.8 2.8 49 109-158 6-54 (65)
469 PF14689 SPOB_a: Sensor_kinase 42.8 47 0.001 21.7 3.6 26 415-440 26-51 (62)
470 KOG2422 Uncharacterized conser 42.7 3.6E+02 0.0078 27.0 12.6 79 215-293 349-431 (665)
471 cd08332 CARD_CASP2 Caspase act 42.6 68 0.0015 22.9 4.7 30 160-189 48-77 (90)
472 COG2256 MGS1 ATPase related to 42.3 3.1E+02 0.0067 26.1 12.4 135 109-257 143-298 (436)
473 PF04097 Nic96: Nup93/Nic96; 41.9 4.1E+02 0.0088 27.3 29.1 21 390-410 515-535 (613)
474 COG5108 RPO41 Mitochondrial DN 41.3 1.4E+02 0.0029 30.3 7.7 76 314-389 33-112 (1117)
475 COG0735 Fur Fe2+/Zn2+ uptake r 41.2 1.7E+02 0.0036 23.2 7.2 61 232-293 10-70 (145)
476 PF11817 Foie-gras_1: Foie gra 41.0 1.2E+02 0.0026 26.7 7.0 22 213-234 183-204 (247)
477 KOG0376 Serine-threonine phosp 41.0 70 0.0015 30.7 5.6 103 316-422 11-115 (476)
478 PRK11639 zinc uptake transcrip 40.5 1.2E+02 0.0026 24.8 6.4 59 104-163 19-77 (169)
479 KOG2582 COP9 signalosome, subu 40.4 3.1E+02 0.0068 25.6 12.3 94 79-174 105-211 (422)
480 smart00777 Mad3_BUB1_I Mad3/BU 40.4 1.4E+02 0.003 23.0 6.3 40 431-470 82-123 (125)
481 COG5108 RPO41 Mitochondrial DN 38.3 1.5E+02 0.0032 30.0 7.4 91 81-174 33-131 (1117)
482 COG5191 Uncharacterized conser 38.2 48 0.001 29.8 3.9 65 411-475 106-171 (435)
483 PRK11639 zinc uptake transcrip 38.0 1.5E+02 0.0032 24.2 6.6 59 235-294 18-76 (169)
484 PF09670 Cas_Cas02710: CRISPR- 37.5 3.7E+02 0.0079 25.6 12.3 56 216-272 139-198 (379)
485 cd08332 CARD_CASP2 Caspase act 37.3 1.1E+02 0.0025 21.8 5.1 59 16-91 22-80 (90)
486 KOG4279 Serine/threonine prote 37.1 5E+02 0.011 27.0 10.9 149 78-238 203-396 (1226)
487 PF12926 MOZART2: Mitotic-spin 37.1 1.5E+02 0.0033 21.0 6.7 41 132-172 29-69 (88)
488 KOG0686 COP9 signalosome, subu 36.8 3.8E+02 0.0082 25.5 14.0 64 209-272 151-216 (466)
489 PF13929 mRNA_stabil: mRNA sta 36.4 3.2E+02 0.007 24.6 19.9 66 340-405 198-263 (292)
490 PRK15490 Vi polysaccharide bio 35.9 2.4E+02 0.0053 28.4 8.6 47 390-436 52-98 (578)
491 PRK09462 fur ferric uptake reg 35.0 1.9E+02 0.0041 22.9 6.8 61 101-162 7-68 (148)
492 PRK14962 DNA polymerase III su 34.9 4.6E+02 0.0099 25.9 10.8 29 219-247 254-282 (472)
493 KOG3824 Huntingtin interacting 34.9 68 0.0015 28.8 4.3 55 392-446 128-184 (472)
494 PF13929 mRNA_stabil: mRNA sta 34.8 3.4E+02 0.0075 24.4 20.2 56 275-330 199-259 (292)
495 PF11838 ERAP1_C: ERAP1-like C 34.6 3.6E+02 0.0078 24.6 10.6 58 344-405 169-226 (324)
496 PF04034 DUF367: Domain of unk 34.3 2.2E+02 0.0047 22.0 7.3 57 381-437 67-124 (127)
497 cd08330 CARD_ASC_NALP1 Caspase 34.3 1.4E+02 0.003 20.9 5.0 59 12-87 13-71 (82)
498 cd07153 Fur_like Ferric uptake 34.2 91 0.002 23.3 4.6 43 82-124 6-48 (116)
499 cd08323 CARD_APAF1 Caspase act 33.8 1.5E+02 0.0033 20.9 5.2 58 130-191 16-73 (86)
500 PF12862 Apc5: Anaphase-promot 33.7 1.8E+02 0.0039 20.8 7.3 20 353-372 50-69 (94)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-72 Score=579.36 Aligned_cols=475 Identities=35% Similarity=0.670 Sum_probs=442.9
Q ss_pred CcHHHHHHHhhch---hHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcc
Q 042265 1 MTLNNFIKRCKTI---KQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTF 77 (490)
Q Consensus 1 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 77 (490)
+||+.++++|+.. ..++.+|..+.+.| +. |++.++|.|+.+|+ +.|++++|.++|++|++||..
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~--~~~~~~n~Li~~y~----------k~g~~~~A~~lf~~m~~~d~~ 254 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFG-FE--LDVDVVNALITMYV----------KCGDVVSARLVFDRMPRRDCI 254 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcC-CC--cccchHhHHHHHHh----------cCCCHHHHHHHHhcCCCCCcc
Confidence 5899999999754 55689999999999 77 99999999999999 999999999999999999999
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042265 78 SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYC 157 (490)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 157 (490)
+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|+
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHH-------------------------------------------
Q 042265 158 VFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLA------------------------------------------- 194 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------------------------------- 194 (490)
+.|++++|.++|++|..||..+|+.++.+|++.|+++
T Consensus 335 k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred hcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999998777777777776655555444
Q ss_pred ---------------------------HHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 042265 195 ---------------------------HARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALV 247 (490)
Q Consensus 195 ---------------------------~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 247 (490)
+|.++|++|.++|..+|+.++.+|++.|+.++|+++|++|.. +++||..||+
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~ 493 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLI 493 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHH
Confidence 455555555556777777777777777888888888888875 5899999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHH
Q 042265 248 SALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRL 327 (490)
Q Consensus 248 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 327 (490)
.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|+.+ .+|..+||++|.+|+++|+.++
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 328 SLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 328 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|.
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999667999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCceeEEE
Q 042265 408 MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLIQ 487 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 487 (490)
.+||..+|++|+.+|..+|+.+.++...+++.+++|++...|..+++.|.+.|+|++|.++.+.|+++|++++||++|++
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 042265 488 LNG 490 (490)
Q Consensus 488 ~~~ 490 (490)
++|
T Consensus 733 ~~~ 735 (857)
T PLN03077 733 VKG 735 (857)
T ss_pred ECC
Confidence 986
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-69 Score=546.76 Aligned_cols=473 Identities=26% Similarity=0.445 Sum_probs=451.1
Q ss_pred cHHHHHHHh---hchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC----CC
Q 042265 2 TLNNFIKRC---KTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP----YP 74 (490)
Q Consensus 2 ~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~ 74 (490)
+++.++.++ ++++.+-.+++.|...+.+. |+..+|+.++..|+ +.++++.|.+++..|. .|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~--~~~~t~~~ll~a~~----------~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFT--LPASTYDALVEACI----------ALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhCCCc
Confidence 355565544 56788888888888765356 89999999999999 9999999999998875 58
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
|..+||.++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 999999999999999999999999999964 8999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHhc----ccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHH
Q 042265 155 VYCVFHRLRDAQELFDEI----LYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQL 230 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 230 (490)
++.+.|..+.+.+++..+ ..+|..+|+.++.+|++.|++++|.++|++|.++|..+||.++.+|++.|++++|+++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999998877 3468899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee
Q 042265 231 FCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF 310 (490)
Q Consensus 231 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 310 (490)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.|+.+|++.|++++|.++|++|.++|..
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~ 392 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
+||.||.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998779999999999999999
Q ss_pred hhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 042265 391 GRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
++.|++++|.++++++...|+..+|++++.+|..+|+.+.|..+++++.+..|++..+|..++.+|.+.|++++|.++++
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCceeEEEeCC
Q 042265 471 SLDAGKIKKNAGCSLIQLNG 490 (490)
Q Consensus 471 ~m~~~~~~~~~~~~~~~~~~ 490 (490)
+|++.|+++.||++|++++|
T Consensus 553 ~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 553 TLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred HHHHcCCccCCCeeEEEECC
Confidence 99999999999999999875
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-66 Score=531.93 Aligned_cols=466 Identities=24% Similarity=0.455 Sum_probs=432.4
Q ss_pred cHHHHHHHhhc---hhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCccc
Q 042265 2 TLNNFIKRCKT---IKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFS 78 (490)
Q Consensus 2 ~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 78 (490)
+|..++++|.+ ++.+..+|.++.+.| +. ++..++|.|+..|+ +.|+++.|+++|++|++||..+
T Consensus 88 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~n~li~~~~----------~~g~~~~A~~~f~~m~~~d~~~ 154 (857)
T PLN03077 88 AYVALFRLCEWKRAVEEGSRVCSRALSSH-PS--LGVRLGNAMLSMFV----------RFGELVHAWYVFGKMPERDLFS 154 (857)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CC--CCchHHHHHHHHHH----------hCCChHHHHHHHhcCCCCCeeE
Confidence 68889999864 566789999999998 66 89999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..+++.|+.+|++
T Consensus 155 ~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999988998888888888888
Q ss_pred cCChHHHHHHHHhcccCCchhHHHHHHH----------------------------------------------------
Q 042265 159 FHRLRDAQELFDEILYRDVVSCNTLIDG---------------------------------------------------- 186 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~---------------------------------------------------- 186 (490)
.|++++|.++|++|..+|..+||++|.+
T Consensus 235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 8888888888888866655555555554
Q ss_pred ------------------HHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 042265 187 ------------------YVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVS 248 (490)
Q Consensus 187 ------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 248 (490)
|++.|++++|.++|++|..+|..+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 45667777777778888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHH
Q 042265 249 ALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLS 328 (490)
Q Consensus 249 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 328 (490)
++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC
Q 042265 329 LVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM 408 (490)
Q Consensus 329 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (490)
+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+. |+.++..+++.|+++|+++|++++|.++|+++
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-- 550 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-- 550 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence 999999986 59999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh-cCCCCCCCceeE
Q 042265 409 GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYKVLADVYANADRWEDVVKIRRSLD-AGKIKKNAGCSL 485 (490)
Q Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~ 485 (490)
.+|..+|+.++.+|.++|+.++|.++|++|.+ ..|+. .+|..++.+|.+.|++++|.++|++|. +.|+.|+..++.
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 67999999999999999999999999999998 55654 599999999999999999999999999 679999876543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-63 Score=505.29 Aligned_cols=398 Identities=14% Similarity=0.238 Sum_probs=234.6
Q ss_pred hhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcC
Q 042265 10 CKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLF 89 (490)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 89 (490)
+|+++.+..+++.|.+.|.+. ++..+++.++..|. +.|.+++|.++|+.|+.||..+|+.++.+|++.
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~--~~~v~~~~li~~~~----------~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLD--MDKIYHAKFFKACK----------KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHH----------HCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 367788888888888887433 55555555666666 556666666666666556666666666666666
Q ss_pred CCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 042265 90 SSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELF 169 (490)
Q Consensus 90 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 169 (490)
|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666555566666666666666666666666666
Q ss_pred Hhc----ccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC------CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042265 170 DEI----LYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP------FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI 239 (490)
Q Consensus 170 ~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 239 (490)
++| ..||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 555 23455566666666666666666666655553 23555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC----CCeehHHHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE----KNLFTWNAM 315 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l 315 (490)
.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555542 355555555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL 395 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (490)
|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|+
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCC
Confidence 5555555555555555555555555555555555555555555555555555555554 555555555555555555555
Q ss_pred HHHHHHHHhhCCCC---CCHHHHHHHHH
Q 042265 396 IEEALEMIKKMPMG---GDVFVWSGLLG 420 (490)
Q Consensus 396 ~~~A~~~~~~~~~~---~~~~~~~~l~~ 420 (490)
+++|.+++++|... ||..+|+.++.
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55555555555422 25555555543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-62 Score=495.14 Aligned_cols=461 Identities=15% Similarity=0.206 Sum_probs=420.9
Q ss_pred cHHHHHHHhhc---hhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC----CC
Q 042265 2 TLNNFIKRCKT---IKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP----YP 74 (490)
Q Consensus 2 ~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~ 74 (490)
+++.++..|.. ...+..++..|. . |+..+||.|+..|+ +.|++++|.++|+.|. .|
T Consensus 408 ~~~~li~~~~~~g~~~eAl~lf~~M~-----~--pd~~Tyn~LL~a~~----------k~g~~e~A~~lf~~M~~~Gl~p 470 (1060)
T PLN03218 408 YHAKFFKACKKQRAVKEAFRFAKLIR-----N--PTLSTFNMLMSVCA----------SSQDIDGALRVLRLVQEAGLKA 470 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcC-----C--CCHHHHHHHHHHHH----------hCcCHHHHHHHHHHHHHcCCCC
Confidence 34566777754 455555554443 2 89999999999999 9999999999999986 58
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHhcc------cCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CeehHHHHHHHHHhcCCh
Q 042265 155 VYCVFHRLRDAQELFDEIL------YRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR----DAVSWGTLVAGYAQSDQC 224 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~ 224 (490)
+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+. +..+|+.+|.+|++.|++
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 9999999999999999994 578999999999999999999999999999744 678999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 225 EEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 225 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C----CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc
Q 042265 305 Q----EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKEL 380 (490)
Q Consensus 305 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 380 (490)
. .||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|++++|.+++++|.+. |+.||.
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~ 789 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNL 789 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCH
Confidence 5 58999999999999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred hHHHHHHhhhh----hcC-------------------CHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 381 KHYGCMADLLG----RAG-------------------LIEEALEMIKKMPMG---GDVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 381 ~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.+|+.++..+. +++ ..++|..+|++|... ||..+|+.++.++...+..+.+..+
T Consensus 790 ~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 790 VMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRL 869 (1060)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHH
Confidence 99999987643 221 236789999998754 5999999999888888999999999
Q ss_pred HHHHHh-hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCc
Q 042265 435 AEHVMK-LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAG 482 (490)
Q Consensus 435 ~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 482 (490)
++.+.. ..+++..+|+.++.++.+. .++|..++++|...|+.|+-.
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 988765 5556667999999988332 368999999999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.9e-60 Score=477.82 Aligned_cols=462 Identities=19% Similarity=0.250 Sum_probs=420.4
Q ss_pred CcHHHHHHHhhch---hHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcc
Q 042265 1 MTLNNFIKRCKTI---KQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTF 77 (490)
Q Consensus 1 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 77 (490)
+||+.++.+|++. +.++.+|..+.+.| +. |++.++|.|+.+|+ +.|++++|.++|++|+.||..
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~--~~~~~~n~Li~~y~----------k~g~~~~A~~lf~~m~~~~~~ 190 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSG-FE--PDQYMMNRVLLMHV----------KCGMLIDARRLFDEMPERNLA 190 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CC--cchHHHHHHHHHHh----------cCCCHHHHHHHHhcCCCCCee
Confidence 4799999999754 55689999999999 77 99999999999999 999999999999999999999
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042265 78 SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYC 157 (490)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 157 (490)
+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|+..|+.+.+.+++..+.+.|+.||..+++.|+++|+
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeehHHHHHHHHHhcCChhHHHHHHHH
Q 042265 158 VFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP----FRDAVSWGTLVAGYAQSDQCEEAIQLFCN 233 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (490)
+.|++++|.++|++|.++|..+|++++.+|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++..
T Consensus 271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999994 67999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC----CCCe
Q 042265 234 MMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ----EKNL 309 (490)
Q Consensus 234 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~ 309 (490)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|.++|++|. .||.
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999999999999999999999999986 4789999999999999999999999999986 4899
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIE-ARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
.||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ +..|+..+|+.|+.
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHH
Confidence 9999999999999999999999999986 699999999999999999999999999998875 67899999999999
Q ss_pred hhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCCchHHHHHH-------H--
Q 042265 389 LLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK--PEDGGVYKVLAD-------V-- 455 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~-------~-- 455 (490)
+|...|+++.|..+++++.. .| +..+|..++..|.+.|++++|.+++++|.+.. +....+|..+.. .
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 99999999999999988653 34 67899999999999999999999999999832 222212211100 0
Q ss_pred -H-HhcCChHHHHHHHHHHhcCCCCCCCce
Q 042265 456 -Y-ANADRWEDVVKIRRSLDAGKIKKNAGC 483 (490)
Q Consensus 456 -~-~~~g~~~~A~~~~~~m~~~~~~~~~~~ 483 (490)
+ ....-++...++.++|.+.|..|+..+
T Consensus 583 ~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 583 LHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 0 001124566778888889998887554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-30 Score=275.20 Aligned_cols=440 Identities=15% Similarity=0.062 Sum_probs=256.5
Q ss_pred chhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHc
Q 042265 12 TIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTL 88 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 88 (490)
.++.+..++..+.+.. + +++.++..+...|. +.|++++|.+.|+++. +.+...+..+...+..
T Consensus 446 ~~~~A~~~~~~~~~~~--~--~~~~~~~~l~~~~~----------~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQ--P--DNASLHNLLGAIYL----------GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred CHHHHHHHHHHHHHhC--C--CCcHHHHHHHHHHH----------hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 3344444444444332 1 44555555555555 5566666666665432 2334445555555556
Q ss_pred CCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 042265 89 FSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQEL 168 (490)
Q Consensus 89 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 168 (490)
.|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+.+.|++++|.++
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666666655542 2344455555555555666666666666655543 44455555566666666666666666
Q ss_pred HHhccc---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042265 169 FDEILY---RDVVSCNTLIDGYVKAGDLAHARQLFDRMPF---RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242 (490)
Q Consensus 169 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 242 (490)
++++.. .+...|..+...+.+.|++++|...|+++.+ .+...+..+..++...|++++|...|+++.+.. +.+
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 665532 2444566666666666666666666655432 244455566666666666666666666665542 233
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CCeehHHHHHHHHH
Q 042265 243 NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--KNLFTWNAMLVGLA 320 (490)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~ 320 (490)
..++..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.. |+..++..++.++.
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Confidence 4555666666666666666666666665554 44555556666666666666666666665543 33345555666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHH
Q 042265 321 MHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEAL 400 (490)
Q Consensus 321 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (490)
..|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++.+ ..+.++..++.+...+...|+ ++|+
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHH
Confidence 6666666666666666543 23455566666666666666666666666665 334555666666666666666 5566
Q ss_pred HHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 401 EMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 401 ~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
.+++++.. .| ++.++..+...+...|++++|...++++++..|.++.++..++.++.+.|++++|.+++++|.
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66665431 22 555566666666666777777777777776666666666666777777777777777666664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.6e-30 Score=270.20 Aligned_cols=412 Identities=13% Similarity=0.069 Sum_probs=308.9
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
+.|++++|.++++.+. +++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5555555555555443 2345566666666777777777777777666542 23334555566666666777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CC
Q 042265 134 HSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPF---RD 207 (490)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 207 (490)
++.+.+.+ +.+..++..+...+.+.|+.++|...++++... +...+..++..+.+.|++++|.++++.+.. .+
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 600 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS 600 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 77766654 555666667777777777777777777766332 344566677777777777777777776642 25
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...|..++.++...|++++|...|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..++..
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 5677777788888888888888888777653 3355567777777777888888888888777664 5566777778888
Q ss_pred HHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
+...|++++|..+++.+.+ .+...+..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|++++|.
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888877764 245567777888888899999999998888764 45567777888888999999999
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
+.++++.+ ..+.+...+..+...|...|++++|.+.|+++.. .| ++.++..++..+...|+ .+|+..++++.+..
T Consensus 757 ~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 757 KTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 99999887 5667788888999999999999999999998753 33 78889999999999999 88999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 443 PEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
|+++..+..++.++.+.|++++|.++++++.+.+.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999998764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2.3e-22 Score=213.79 Aligned_cols=444 Identities=12% Similarity=0.059 Sum_probs=302.1
Q ss_pred HhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC--CC-cccH------
Q 042265 9 RCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY--PS-TFSY------ 79 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~------ 79 (490)
+.++.+.++..++++.... |.++.++..++..+. +.|+.++|.+.+++..+ |+ ...+
T Consensus 40 ~~~~~d~a~~~l~kl~~~~----p~~p~~~~~~~~~~l----------~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID----PNNPDVIAARFRLLL----------RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTM 105 (1157)
T ss_pred hhCChHHHHHHHHHHHccC----CCCHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 3356677778888777765 268889999999999 99999999999988752 32 2222
Q ss_pred ----------HHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhH
Q 042265 80 ----------NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS-FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFV 148 (490)
Q Consensus 80 ----------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 148 (490)
..+.+.+.+.|++++|++.|+.+.+.+ +|+... ...+.......|+.++|.+.++++.+.. |.+...
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~ 183 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGL 183 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHH
Confidence 233446888999999999999998753 333321 1112222334589999999999999875 667888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCc------h-----------------hHH------------------------
Q 042265 149 LNSLMHVYCVFHRLRDAQELFDEILYRDV------V-----------------SCN------------------------ 181 (490)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~-----------------~~~------------------------ 181 (490)
+..+...+...|+.++|+..++++..... . .+.
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 88999999999999999999988632110 0 000
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHhhCCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHH-
Q 042265 182 ----------TLIDGYVKAGDLAHARQLFDRMPF--R-DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD-NIAL- 246 (490)
Q Consensus 182 ----------~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~- 246 (490)
.....+...|++++|+..|++... | +..++..+..++.+.|++++|+..|++..+...... ...+
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 113345678999999999988653 2 677888999999999999999999999887542221 1111
Q ss_pred -----------HHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehH
Q 042265 247 -----------VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTW 312 (490)
Q Consensus 247 -----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 312 (490)
......+.+.|++++|...++++.+.. +.+...+..+..++...|++++|++.|+++.+. +...+
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 122445678899999999999988875 556677778888999999999999998887642 22222
Q ss_pred HH------------------------------------------HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042265 313 NA------------------------------------------MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGA 350 (490)
Q Consensus 313 ~~------------------------------------------l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 350 (490)
.. +...+...|++++|++.|++..+.... +...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 21 223345678899999999988875322 45566777
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh------------------------------------------
Q 042265 351 LVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD------------------------------------------ 388 (490)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~------------------------------------------ 388 (490)
...+.+.|++++|...++++.+. .+.+...+..+..
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 88888999999999999988763 2223332222222
Q ss_pred --hhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 389 --LLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 389 --~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
.+...|+.++|.++++.-+ +++..+..+...+.+.|++++|+..|+++++..|+++.++..++.+|...|++++|.
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 2233334444444433111 133444555666666677777777777777666666666666666666666666666
Q ss_pred HHHHHHhc
Q 042265 467 KIRRSLDA 474 (490)
Q Consensus 467 ~~~~~m~~ 474 (490)
+.++++.+
T Consensus 658 ~~l~~ll~ 665 (1157)
T PRK11447 658 AQLAKLPA 665 (1157)
T ss_pred HHHHHHhc
Confidence 66665543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2.9e-22 Score=213.11 Aligned_cols=409 Identities=11% Similarity=0.036 Sum_probs=329.5
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc---cHH------------HHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY---SFP------------FLL 118 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~------------~ll 118 (490)
..|++++|+..|++.. +.+...+..+...+.+.|++++|+..|++..+.. |+.. .+. ...
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHH
Confidence 7899999999998764 4477889999999999999999999999998754 3322 121 223
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHH
Q 042265 119 RACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAH 195 (490)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 195 (490)
..+.+.|++++|...++++++.. +.+...+..+..++...|++++|++.|+++.+. +...+..+...+. .++.++
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHH
Confidence 45678899999999999999975 667778888999999999999999999999653 3446666666664 568899
Q ss_pred HHHHHhhCCCCC------------eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 042265 196 ARQLFDRMPFRD------------AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGK 263 (490)
Q Consensus 196 a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 263 (490)
|..+++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999998775321 2345667788899999999999999998864 235667788899999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCC--e-----------ehHHHHHHHHHHcCChHHHHH
Q 042265 264 NIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKN--L-----------FTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-----------~~~~~l~~~~~~~~~~~~A~~ 330 (490)
..++++.+.. +.+...+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|..
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999998765 4566666666677888999999999999886431 1 112345667889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-
Q 042265 331 YFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG- 409 (490)
Q Consensus 331 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 409 (490)
+++. .+++...+..+...+.+.|++++|...|+++.+ ..+.+...+..++..|...|++++|.+.++.+...
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 9872 244556777788889999999999999999998 45667888999999999999999999999987643
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc------hHHHHHHHHHhcCChHHHHHHHHHHhc-CCCC
Q 042265 410 G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG------VYKVLADVYANADRWEDVVKIRRSLDA-GKIK 478 (490)
Q Consensus 410 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 478 (490)
| +...+..+..++...|++++|.++++++++..|+++. .+..++..+...|++++|...|++... .|+.
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 3 6777888888999999999999999999997765543 566678999999999999999998864 3454
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=5.9e-23 Score=186.87 Aligned_cols=370 Identities=14% Similarity=0.111 Sum_probs=182.2
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042265 78 SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYC 157 (490)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 157 (490)
+|..+...+-..|+++.|+.+|+.+.+.. +-....|..+..++...|+.+.|.+.|...++.+ |........+...+.
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHH
Confidence 44445555555555555555555555432 1133345555555555555555555555555432 111222233334444
Q ss_pred hcCChHHHHHHHHhcccCC---chhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---eehHHHHHHHHHhcCChhHHHHHH
Q 042265 158 VFHRLRDAQELFDEILYRD---VVSCNTLIDGYVKAGDLAHARQLFDRMPFRD---AVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
..|++.+|...+.+.++.+ ...|+.|...+...|++-.|++.|++..+-| ..+|-.|...|...+.+++|...|
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 4555555555555443322 2345555555555555555555555544332 234555555555555555555555
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---C
Q 042265 232 CNMMDLDIKPD-NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---K 307 (490)
Q Consensus 232 ~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 307 (490)
.+.... .|+ ...+..+...|...|.+|.|+..|++..+.. |.-+..|+.|..++-..|++.+|.+.|.+... .
T Consensus 276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 554442 232 2344445555555555555555555555443 22344555555555555555555555555443 1
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC-chHHHH
Q 042265 308 NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE-LKHYGC 385 (490)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 385 (490)
...+.+.|...+...|..++|..+|....+- .|. ....+.|...|-.+|++++|...|++..+ +.|+ ...|+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~N 427 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSN 427 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHh
Confidence 2334555555555555555555555554442 222 23444455555555555555555555543 2222 344555
Q ss_pred HHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 386 MADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
+...|...|+.+.|...+.+.. ..| -+...+.|...|...|+..+|++.++.++++.|+.+.+|-.++.++.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 5555555555555555554432 233 34445555555555555555555555555555555555555554443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=7e-23 Score=186.39 Aligned_cols=411 Identities=13% Similarity=0.059 Sum_probs=340.9
Q ss_pred CCCChhHHHHhhccCC--CC-CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 57 TTDPLSYALSIFNNIP--YP-STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
+.|++++|++.-.-.- .| +....-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+-..|+++.|...
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred hccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 5899999988755432 12 2222223334455666666655444443333 234567899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhH---HHHHHHHHhcCCHHHHHHHHhhCCC--C-C
Q 042265 134 HSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSC---NTLIDGYVKAGDLAHARQLFDRMPF--R-D 207 (490)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~--~-~ 207 (490)
++.+++.. +.....|..+..++...|+.+.|.+.|.+.++-++..+ +.+...+...|++++|...|.+..+ | =
T Consensus 139 y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f 217 (966)
T KOG4626|consen 139 YRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF 217 (966)
T ss_pred HHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce
Confidence 99999975 66788999999999999999999999999876655433 3345556678999999999887653 3 3
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD-NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
..+|..|...+..+|+...|+..|++.++. .|+ ...|..|...|...+.++.|...|.+..... +....++..+..
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~ 294 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLAC 294 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEE
Confidence 678999999999999999999999999874 454 3588999999999999999999999988775 566788888999
Q ss_pred HHHhcCCHHHHHHHHhccCC--CC-eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQE--KN-LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEA 363 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 363 (490)
.|...|.++-|+..|++..+ |+ +..|+.|..++-..|++.+|+..|++..... ..-....+.|...+...|.+++|
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHH
Confidence 99999999999999999875 33 4689999999999999999999999998863 22457788999999999999999
Q ss_pred HHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 364 RKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM-PMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
..+|....+ -.+.-....+.|...|...|++++|+..+++. +.+| -+..++.+...|...|+.+.|++.+.+++.+
T Consensus 374 ~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 374 TRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 999999987 34445667899999999999999999999885 4566 6788999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 442 KPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+|.-..++..|+..|...|+..+|+.-++...+.
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999988654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=6e-21 Score=190.88 Aligned_cols=390 Identities=14% Similarity=0.036 Sum_probs=295.6
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
+......+.+.|++++|+..|++..+. .|+...|..+..++...|++++|.+.++..++.+ +.+...+..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445677888999999999999998874 5788889999999999999999999999999875 6677889999999999
Q ss_pred cCChHHHHHHHHhcccCCc---hhHHHHHHHHHhcCCHHHHHHHHhhCCCC-----------------------------
Q 042265 159 FHRLRDAQELFDEILYRDV---VSCNTLIDGYVKAGDLAHARQLFDRMPFR----------------------------- 206 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------- 206 (490)
.|++++|...|......+. .....++..+........+...++.-...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999988766532211 11111111111111112222222111100
Q ss_pred C---eehHHHHHHHH---HhcCChhHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCh
Q 042265 207 D---AVSWGTLVAGY---AQSDQCEEAIQLFCNMMDLD-IKP-DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDS 278 (490)
Q Consensus 207 ~---~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 278 (490)
+ ...+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 0 01111111111 22468999999999998764 234 34567888888899999999999999998875 4456
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 042265 279 FLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355 (490)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 355 (490)
..+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 7888899999999999999999998764 356788999999999999999999999998864 225667777888899
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-C------H-HHHHHHHHHHHhcC
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-D------V-FVWSGLLGGCRIHG 426 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~------~-~~~~~l~~~~~~~~ 426 (490)
+.|++++|...+++..+ ..+.+...++.+...+...|++++|.+.|++.. ..| + . ..++.....+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999987 456677889999999999999999999998843 222 1 1 11222222344579
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 427 NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 427 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++++|.++++++++++|++..++..++.++.+.|++++|.+.|++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999888999999999999999999999988654
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.7e-21 Score=185.21 Aligned_cols=299 Identities=13% Similarity=0.060 Sum_probs=180.5
Q ss_pred HHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------eehHHHHHHHHHhcCC
Q 042265 154 HVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFRD-------AVSWGTLVAGYAQSDQ 223 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g~ 223 (490)
..+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+.... ...+..++..|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777777776443 22344555555555555555555555543221 1234445555555555
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 042265 224 CEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFES 303 (490)
Q Consensus 224 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 303 (490)
+++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555554432 22344455555555555555555555555544321111000
Q ss_pred cCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHH
Q 042265 304 SQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHY 383 (490)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 383 (490)
....+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+. .......++
T Consensus 179 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ 252 (389)
T PRK11788 179 ----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVL 252 (389)
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHH
Confidence 00123445556667777777777777776643 223445666667777778888888888877763 211223456
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh---c
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN---A 459 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~ 459 (490)
..++.+|...|++++|...++++. ..|+...+..++..+.+.|++++|..+++++++..|++. .+..+...+.. .
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCC
Confidence 677777888888888888877754 345555667777888888888888888888888888776 55555555443 4
Q ss_pred CChHHHHHHHHHHhcCCCCCCCce
Q 042265 460 DRWEDVVKIRRSLDAGKIKKNAGC 483 (490)
Q Consensus 460 g~~~~A~~~~~~m~~~~~~~~~~~ 483 (490)
|+.+++..++++|.+++++++|.+
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCCE
Confidence 588888888888888888888874
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=8.5e-20 Score=182.02 Aligned_cols=355 Identities=10% Similarity=-0.014 Sum_probs=195.2
Q ss_pred CCCChhHHHHhhccCCC------CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHH
Q 042265 57 TTDPLSYALSIFNNIPY------PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLA 130 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 130 (490)
+..+++.---.|..-++ .+..-...++..+.+.|++++|..+++...... +-+...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 45556655555554442 123334456667778888888888888877653 22333455555666677888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCC--C
Q 042265 131 QTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDLAHARQLFDRMP--F 205 (490)
Q Consensus 131 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~ 205 (490)
...++.+.+.. |.+...+..+...+.+.|++++|...+++... | +...+..+...+...|++++|...++.+. .
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 88888888765 56667777777888888888888888877744 3 34456666666666666666666665542 1
Q ss_pred C-CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042265 206 R-DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGL 284 (490)
Q Consensus 206 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (490)
| +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+
T Consensus 175 P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~L 252 (656)
T PRK15174 175 PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSL 252 (656)
T ss_pred CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 2 22223222 2355666666666666666554322333333444555566666666666666666553 3344455555
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 285 VDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
..+|...|++++|. .+|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 253 g~~l~~~G~~~eA~---------------------------~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 253 GLAYYQSGRSREAK---------------------------LQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred HHHHHHcCCchhhH---------------------------HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55555555554310 01444444444432 112334444444555555555555
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGGD-VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
..++++.+ ..+.+...+..+..++.+.|++++|...++++. ..|+ ...+..+..++...|+.++|+..|+++++..
T Consensus 305 ~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 305 PLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 55555544 222333344444555555555555555555433 2232 2222223344555555555555555555555
Q ss_pred CCC
Q 042265 443 PED 445 (490)
Q Consensus 443 p~~ 445 (490)
|++
T Consensus 383 P~~ 385 (656)
T PRK15174 383 ASH 385 (656)
T ss_pred hhh
Confidence 543
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=8.7e-19 Score=178.78 Aligned_cols=439 Identities=12% Similarity=-0.006 Sum_probs=295.5
Q ss_pred hchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC--C-CcccHHHHHHHHH
Q 042265 11 KTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY--P-STFSYNTIIRAHT 87 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 87 (490)
|..+.+...+++..+.. + .++.++..|...|. +.|++++|+..+++... | |...+..+ ..+
T Consensus 58 Gd~~~A~~~l~~Al~~d-P---~n~~~~~~LA~~yl----------~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i- 121 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-P---DNIPLTLYLAEAYR----------HFGHDDRARLLLEDQLKRHPGDARLERSL-AAI- 121 (987)
T ss_pred CCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh-
Confidence 56677778888888876 3 56888999999999 89999999999987642 3 33333333 222
Q ss_pred cCCCchhHHHHHHHhhhCCC------------------------------------CCC--cccHHHH-HHHHhccCCcH
Q 042265 88 LFSSPLNAVVLFSQMRTVSI------------------------------------PPD--FYSFPFL-LRACSQLCSHS 128 (490)
Q Consensus 88 ~~g~~~~A~~~~~~m~~~~~------------------------------------~p~--~~~~~~l-l~~~~~~~~~~ 128 (490)
+++++|..+|+++.+... .|+ ....... .+.|.+.|+++
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 777788888888765421 111 2212222 45566677777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-
Q 042265 129 LAQTIHSQVLKLGFICDVFVLNSLMHVYCV-FHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR- 206 (490)
Q Consensus 129 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 206 (490)
.|++.+.++.+.+ +.+......|..+|.. .++ +++..+++...+.++..+..+...+.+.|+.++|.++++++..-
T Consensus 200 ~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 200 QADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 7777777777765 4455556666666666 355 77777766544557778888999999999999999999887510
Q ss_pred ----Ceeh------------------------------HHHHHHH-----------------------------------
Q 042265 207 ----DAVS------------------------------WGTLVAG----------------------------------- 217 (490)
Q Consensus 207 ----~~~~------------------------------~~~l~~~----------------------------------- 217 (490)
...+ .-.++..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 0000 0000111
Q ss_pred ----------------------------HHhcCChhHHHHHHHHHHhC-C-CCC--------------------------
Q 042265 218 ----------------------------YAQSDQCEEAIQLFCNMMDL-D-IKP-------------------------- 241 (490)
Q Consensus 218 ----------------------------~~~~g~~~~A~~~~~~m~~~-~-~~p-------------------------- 241 (490)
..+.|+.++|.++|+..... + ..+
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 12344555555555444331 0 001
Q ss_pred --------------------------------------CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHH
Q 042265 242 --------------------------------------DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTG 283 (490)
Q Consensus 242 --------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (490)
+...+..+..++.. ++.++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 12222333333332 44455555555554442 33333333
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 042265 284 LVDFYAKCGYINTAIEIFESSQE--KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD 361 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 361 (490)
+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|...+++..+.. +++...+..+.......|+++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHH
Confidence 44455678888888888876653 334455666677788888888888888887754 222233333334445569999
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042265 362 EARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVM 439 (490)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 439 (490)
+|...+++..+. .|+...+..+..++.+.|++++|...+++.. ..| +...+..+...+...|++++|+..+++++
T Consensus 594 eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998863 3567888889999999999999999998865 344 78888889999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 440 KLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+..|+++.++..++.++...|++++|...+++..+..
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999887653
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.7e-20 Score=178.30 Aligned_cols=294 Identities=16% Similarity=0.083 Sum_probs=216.8
Q ss_pred HHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhc
Q 042265 83 IRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICD---VFVLNSLMHVYCVF 159 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 159 (490)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445567788888999999888764 33445778888888888889999888888877532221 24567778888888
Q ss_pred CChHHHHHHHHhccc---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCe--------ehHHHHHHHHHhcCChhHHH
Q 042265 160 HRLRDAQELFDEILY---RDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDA--------VSWGTLVAGYAQSDQCEEAI 228 (490)
Q Consensus 160 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~ 228 (490)
|++++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+...+. ..+..++..+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888888888865 3556778888888888888888888887653311 13456677778888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 042265 229 QLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-- 306 (490)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 306 (490)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++++.+
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888887753 2345566777788888888888888888888764233345677788888888888888888887653
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc---cCcHHHHHHHHHHhHHhhCCCCCch
Q 042265 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH---AGLVDEARKLFDEMESVYGVSKELK 381 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 381 (490)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+. ++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 55556677778888888888888888887765 5777777777766553 45788888888888875 6666665
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=3e-19 Score=181.93 Aligned_cols=387 Identities=8% Similarity=-0.026 Sum_probs=250.9
Q ss_pred HHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 042265 81 TIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH 160 (490)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 160 (490)
-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.++++..++.. |.+...+..+..++...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34555666777777777777776521 2333356677777777777777777777777653 555666667777777777
Q ss_pred ChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHH
Q 042265 161 RLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNM 234 (490)
Q Consensus 161 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m 234 (490)
++++|...++++.+ | +.. +..+..++...|+.++|+..++++... +...+..+..++...|..++|++.++..
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 77777777777743 2 334 666677777777777777777776532 4445566666777777777777777655
Q ss_pred HhCCCCCCH------HHHHHHHHHHH-----ccCCh---HHHHHHHHHHHHc-CCCCChh-hH----HHHHHHHHhcCCH
Q 042265 235 MDLDIKPDN------IALVSALSACA-----RLGEL---EQGKNIHRYIELN-QIRVDSF-LS----TGLVDFYAKCGYI 294 (490)
Q Consensus 235 ~~~~~~p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~ 294 (490)
.. .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+ ...+.++...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 43 2221 01111222221 11223 5677777777654 1122221 11 1112334566788
Q ss_pred HHHHHHHhccCCCC---ee-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 295 NTAIEIFESSQEKN---LF-TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP---DGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 295 ~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
++|+..|+++.+.+ +. ....+..+|...|++++|+..|+++.+..... .......+..++...|++++|.+++
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888888877532 11 22224667788888888888888876543211 1234555666677888888888888
Q ss_pred HHhHHhhCCC------------CC---chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 042265 368 DEMESVYGVS------------KE---LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 368 ~~~~~~~~~~------------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 430 (490)
+.+.+. .+ |+ ...+..+...+...|++++|+++++++. ..| +...+..++..+...|++++
T Consensus 334 ~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 334 AHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 887763 22 22 1234456677778888888888888754 334 77788888888888888888
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 431 AEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 431 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|++.++++++.+|++...+..++..+...|++++|..+++++.+.
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888887654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=7.5e-19 Score=179.02 Aligned_cols=392 Identities=13% Similarity=0.022 Sum_probs=301.0
Q ss_pred CCCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPY---PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
..|+.++|++++.+..+ .+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|++++|...
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 67999999999988653 344468999999999999999999999988753 34455677788888999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCee-
Q 042265 134 HSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAV- 209 (490)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 209 (490)
++++.+.. +.+.. +..+..++...|+.++|+..++++.+. +...+..+...+...+..++|++.++.... ++.
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~ 182 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE 182 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH
Confidence 99999874 66677 888999999999999999999999553 445667788888899999999999998775 211
Q ss_pred -------hHHHHHHHHHhc-----CCh---hHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHccCChHHHHHHHHH
Q 042265 210 -------SWGTLVAGYAQS-----DQC---EEAIQLFCNMMDL-DIKPDNI-AL----VSALSACARLGELEQGKNIHRY 268 (490)
Q Consensus 210 -------~~~~l~~~~~~~-----g~~---~~A~~~~~~m~~~-~~~p~~~-~~----~~l~~~~~~~~~~~~a~~~~~~ 268 (490)
....+++..... +++ ++|++.++.+.+. ...|+.. .+ ...+..+...|+.++|...|+.
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222233333222 234 7788899888864 2223221 11 1113445677999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCe-------ehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-
Q 042265 269 IELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL-------FTWNAMLVGLAMHGLGRLSLVYFSRMIEARI- 340 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~- 340 (490)
+.+.+.+........+..+|...|++++|+..|+++.+.++ .....+..++...|++++|...++.+.....
T Consensus 263 ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 263 LKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 99876321122233367789999999999999998765322 2355566688999999999999999987521
Q ss_pred ----------CCCH---HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 341 ----------KPDG---VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 341 ----------~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
.|+. ..+..+...+...|+.++|++.++++.. ..|.+...+..+...+...|++++|++.+++..
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2332 2445667778899999999999999988 567778889999999999999999999999865
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 408 -MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 408 -~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
..| +...+...+..+...|++++|+..++++++..|+++. ...+-..
T Consensus 421 ~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~-~~~~~~~ 469 (765)
T PRK10049 421 VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG-VQRLARA 469 (765)
T ss_pred hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 445 6778888888899999999999999999999999983 3334333
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=3.4e-18 Score=174.48 Aligned_cols=441 Identities=11% Similarity=0.019 Sum_probs=323.2
Q ss_pred HHHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhh-----ccCCcCCCCCCCCCChhHHHHhhccCC--CC--Ccc
Q 042265 7 IKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAIT-----TFKPISSASSPTTDPLSYALSIFNNIP--YP--STF 77 (490)
Q Consensus 7 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~--~~~ 77 (490)
|...+....+-.+++.+.+.. . .++.++..+.... . +..+.+.|.+.++ .. .| +..
T Consensus 118 La~i~~~~kA~~~ye~l~~~~-P---~n~~~~~~la~~~~~~~~l----------~y~q~eqAl~AL~-lr~~~~~~~~~ 182 (987)
T PRK09782 118 LAAIPVEVKSVTTVEELLAQQ-K---ACDAVPTLRCRSEVGQNAL----------RLAQLPVARAQLN-DATFAASPEGK 182 (987)
T ss_pred HHHhccChhHHHHHHHHHHhC-C---CChhHHHHHHHHhhccchh----------hhhhHHHHHHHHH-HhhhCCCCCcH
Confidence 333355555567777777765 2 4555666555552 1 1345555555555 32 23 333
Q ss_pred cHHH-HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhc-cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 042265 78 SYNT-IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ-LCSHSLAQTIHSQVLKLGFICDVFVLNSLMHV 155 (490)
Q Consensus 78 ~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 155 (490)
+... +.+.|.+.|++++|+++++++.+.+ +.+..-...|..++.. .++ +.+..+++. .+..+...+..+...
T Consensus 183 vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~ 256 (987)
T PRK09782 183 TLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATA 256 (987)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHH
Confidence 3344 4889999999999999999999986 3344446667777777 366 777777543 344688899999999
Q ss_pred HHhcCChHHHHHHHHhccc-----CCchhHHHH------------------------------HHH--------------
Q 042265 156 YCVFHRLRDAQELFDEILY-----RDVVSCNTL------------------------------IDG-------------- 186 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------------------------------~~~-------------- 186 (490)
|.+.|+.++|.+.++++.. |+..+|.-+ +..
T Consensus 257 yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (987)
T PRK09782 257 LAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL 336 (987)
T ss_pred HHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999999999822 111111100 000
Q ss_pred -------------------------------------------------HHhcCCHHHHHHHHhhCCC-C----------
Q 042265 187 -------------------------------------------------YVKAGDLAHARQLFDRMPF-R---------- 206 (490)
Q Consensus 187 -------------------------------------------------~~~~~~~~~a~~~~~~~~~-~---------- 206 (490)
..+.|+.++|.++|+.... +
T Consensus 337 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 337 ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 1245667777766655431 0
Q ss_pred -----------------------------------------------------------CeehHHHHHHHHHhcCChhHH
Q 042265 207 -----------------------------------------------------------DAVSWGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 207 -----------------------------------------------------------~~~~~~~l~~~~~~~g~~~~A 227 (490)
+...|..+..++.. +++++|
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 11223444444444 677788
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 042265 228 IQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK 307 (490)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 307 (490)
...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...+++..+.
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8877777764 466655555566667899999999999997655 455555677788899999999999999988765
Q ss_pred CeehHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHH
Q 042265 308 NLFTWNAML---VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYG 384 (490)
Q Consensus 308 ~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (490)
++...+... ......|++++|...+++..+. .|+...+..+...+.+.|++++|...+++... ..+.+...+.
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~ 647 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQA 647 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 444333333 3334559999999999999875 56788899999999999999999999999998 5566778888
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 385 CMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
.+...+...|++++|+..+++.. ..| ++..+..+..++...|++++|+..++++++..|++..+....++...+..++
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHH
Confidence 99999999999999999999854 445 8889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 042265 463 EDVVKIRRSLDAGKI 477 (490)
Q Consensus 463 ~~A~~~~~~m~~~~~ 477 (490)
+.|.+-+++....++
T Consensus 728 ~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 728 RRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHhhcCc
Confidence 999998887655443
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.2e-18 Score=174.41 Aligned_cols=391 Identities=12% Similarity=-0.020 Sum_probs=288.9
Q ss_pred HHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHH
Q 042265 38 TTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFP 115 (490)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 115 (490)
+..+...|. +.|++++|++.|++.. .|+...|..+..++.+.|++++|++.++...+.. +.+...|.
T Consensus 130 ~k~~G~~~~----------~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~ 198 (615)
T TIGR00990 130 LKEKGNKAY----------RNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALN 198 (615)
T ss_pred HHHHHHHHH----------HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 345667777 7999999999999864 4777889999999999999999999999998864 33455788
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc---------------------
Q 042265 116 FLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY--------------------- 174 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------- 174 (490)
.+..++...|++++|..-+......+ +.+......++..+........+...++.-..
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRP 277 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcch
Confidence 89999999999999998887665543 22211111111111111111222222211100
Q ss_pred --------CCch---hHHHHHHH---HHhcCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChhHHHHHHHHH
Q 042265 175 --------RDVV---SCNTLIDG---YVKAGDLAHARQLFDRMPFR------DAVSWGTLVAGYAQSDQCEEAIQLFCNM 234 (490)
Q Consensus 175 --------~~~~---~~~~l~~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 234 (490)
.+.. .+..+... ....+++++|.+.|+..... +...|+.+...+...|++++|+..|++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0000 11111111 12246899999999886532 4457888899999999999999999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---Cee
Q 042265 235 MDLDIKPD-NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLF 310 (490)
Q Consensus 235 ~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~ 310 (490)
++. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+. +..
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 885 344 5578888899999999999999999998875 667889999999999999999999999988753 456
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCch-------HH
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELK-------HY 383 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~ 383 (490)
.+..+...+.+.|++++|+..+++..... +.+...+..+...+...|++++|...|++.... . +.+.. .+
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~-p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-E-KETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-C-CccccccccHHHHH
Confidence 67788889999999999999999998753 335678888899999999999999999998873 2 11111 11
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+.....+...|++++|.+++++.. ..| +...+..++..+.+.|++++|+..++++.++.+...
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 222233445799999999998853 344 666788999999999999999999999999877544
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.1e-18 Score=174.18 Aligned_cols=329 Identities=10% Similarity=-0.020 Sum_probs=228.8
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCC
Q 042265 113 SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGD 192 (490)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (490)
....++..+.+.|+++.|..+++..+... +-+...+..++.+....|++++|...++++...++
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P--------------- 107 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV--------------- 107 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC---------------
Confidence 34555666677777777777777777664 44455555566666667777777777776643221
Q ss_pred HHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 193 LAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 193 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|+.++|...++.+...
T Consensus 108 -------------~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 108 -------------CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred -------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 123344455555555666666666666655532 223344555555666666666666666655444
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 042265 273 QIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTIL 348 (490)
Q Consensus 273 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 348 (490)
. +.+...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.... +.+...+.
T Consensus 174 ~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 V-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred C-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3 2222222222 2355566666666666655432 12233444567788899999999999988764 23566777
Q ss_pred HHHHHhhccCcHHH----HHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 042265 349 GALVGCSHAGLVDE----ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC 422 (490)
Q Consensus 349 ~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 422 (490)
.+...+...|++++ |...++++.+ ..+.+...+..+...+...|++++|...+++.. ..| +...+..+...+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78888999999885 8999999987 455677889999999999999999999999865 344 677888899999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+.|++++|+..++++.+..|++...+..++.++...|++++|...|++..+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987667777889999999999999999987653
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.7e-19 Score=169.82 Aligned_cols=427 Identities=11% Similarity=0.024 Sum_probs=332.0
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCC------CcccHHHHHHHHHcCCCchhHHHHHHHhhhCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYP------STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVS 106 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 106 (490)
.+|.+.+.|...|. -.|+++.++.+...+... -..+|-.+.+++-..|++++|...|-+..+..
T Consensus 268 ~nP~~l~~LAn~fy----------fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 268 ENPVALNHLANHFY----------FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred CCcHHHHHHHHHHh----------hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 89999999999999 669999999998766421 23457788999999999999999998888753
Q ss_pred CCCCcc--cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----ChHHHHHHHHhcccC---Cc
Q 042265 107 IPPDFY--SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH----RLRDAQELFDEILYR---DV 177 (490)
Q Consensus 107 ~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~ 177 (490)
||.. .+.-+...+...|+++.+...|+.+.+.. |.+..+.-.|...|...+ ..++|..++.+...+ |.
T Consensus 338 --~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 338 --NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred --CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 5554 45567888999999999999999999875 777888888888888775 567888888888665 55
Q ss_pred hhHHHHHHHHHhcCC------HHHHHHHHhh-CCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCH----
Q 042265 178 VSCNTLIDGYVKAGD------LAHARQLFDR-MPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL---DIKPDN---- 243 (490)
Q Consensus 178 ~~~~~l~~~~~~~~~------~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~---- 243 (490)
..|-.+...+....- +..|..++.. +....+...|.+...+...|++++|...|...... ...+|.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 567666666554333 2334433333 22346788999999999999999999999988764 122333
Q ss_pred --HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHH
Q 042265 244 --IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVG 318 (490)
Q Consensus 244 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 318 (490)
.+--.+..+.-..++.+.|.+.|..+.+.. |.-+..|..++.+....++..+|...++.+.. .++..+..+...
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 233445666677889999999999999874 44455565565555556788899999988764 577888888889
Q ss_pred HHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhh------------ccCcHHHHHHHHHHhHHhhCCCCCchHHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEAR-IKPDGVTILGALVGCS------------HAGLVDEARKLFDEMESVYGVSKELKHYGC 385 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 385 (490)
+.....+..|.+-|+...+.- ..+|..+...|...|. ..+..++|.++|.++.+ ..+.|...-|.
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANG 651 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANG 651 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccc
Confidence 999999988888777665532 2357766666666443 23457788999998888 67788888899
Q ss_pred HHhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHHHHHHHHHhcCC
Q 042265 386 MADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~ 461 (490)
+.-.++..|++.+|..+|.++.... ...+|..+..+|...|++-.|++.|+...+ ...+++.+...|++++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999887442 667899999999999999999999999998 444567789999999999999
Q ss_pred hHHHHHHHHHHhcC
Q 042265 462 WEDVVKIRRSLDAG 475 (490)
Q Consensus 462 ~~~A~~~~~~m~~~ 475 (490)
+.+|.+.+......
T Consensus 732 ~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 732 LQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998777654
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=5.7e-17 Score=162.30 Aligned_cols=413 Identities=9% Similarity=-0.013 Sum_probs=303.7
Q ss_pred CCCChhHHHHhhccCCC--CCcc-cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc-HHHH--HHHHhccCCcHHH
Q 042265 57 TTDPLSYALSIFNNIPY--PSTF-SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS-FPFL--LRACSQLCSHSLA 130 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l--l~~~~~~~~~~~a 130 (490)
+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+... +..+ ...+...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 58999999999998763 4321 22378888889999999999999988 243333 3333 4577788999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHH--HhcCCHHHHHHHHhhCCCC--
Q 042265 131 QTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGY--VKAGDLAHARQLFDRMPFR-- 206 (490)
Q Consensus 131 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~-- 206 (490)
.++++++.+.. |.+...+..++..+...++.++|++.++++.+.++.....+..++ ...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 99999999986 666788888899999999999999999999766544333344444 4456666699999987633
Q ss_pred -CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH------HHHHHHH-----HccCCh---HHHHHHHHHHHH
Q 042265 207 -DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL------VSALSAC-----ARLGEL---EQGKNIHRYIEL 271 (490)
Q Consensus 207 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~------~~l~~~~-----~~~~~~---~~a~~~~~~~~~ 271 (490)
+...+..+..++.+.|-...|.++..+-.+. +.+..... ...++.- ....++ +.|..-++.+..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 5677888999999999999999887764322 11111111 1111110 011222 344444555544
Q ss_pred c-CC-CCChhh----HHHHHHHHHhcCCHHHHHHHHhccCCC----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-
Q 042265 272 N-QI-RVDSFL----STGLVDFYAKCGYINTAIEIFESSQEK----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI- 340 (490)
Q Consensus 272 ~-~~-~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~- 340 (490)
. +. |+.... ..-.+-++...++..++++.|+.+..+ ...+-..+..+|...+++++|+.+|+.+.....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 2 11 222222 223455778889999999999999853 334667788999999999999999999876431
Q ss_pred ----CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC----------CCCCc---hHHHHHHhhhhhcCCHHHHHHHH
Q 042265 341 ----KPDGVTILGALVGCSHAGLVDEARKLFDEMESVYG----------VSKEL---KHYGCMADLLGRAGLIEEALEMI 403 (490)
Q Consensus 341 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~g~~~~A~~~~ 403 (490)
.++......|.-++...+++++|..+++.+.+... -.|++ ..+..++..+.-.|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22333356788899999999999999999987311 01222 23345677788999999999999
Q ss_pred hhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 404 KKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 404 ~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+++. ..| |......+...+...|++.+|++.++.+..+.|++..+....+.++...|+|++|..+.+.+.+.
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9975 334 99999999999999999999999999998999999999999999999999999999998877654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.9e-15 Score=151.54 Aligned_cols=422 Identities=11% Similarity=0.028 Sum_probs=316.0
Q ss_pred hchhHHHHHHHHHHHhCCCCCCCc--hhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcc-cHHHH--HHH
Q 042265 11 KTIKQIHQIHAHFLTKGLLFLSPC--HILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTF-SYNTI--IRA 85 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--i~~ 85 (490)
|.++.+...+.+..+.. |+ +.++ -++.++. ..|+.++|+..+++...|+.. .+..+ ...
T Consensus 48 Gd~~~Al~~L~qaL~~~-----P~~~~av~-dll~l~~----------~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 48 GDTAPVLDYLQEESKAG-----PLQSGQVD-DWLQIAG----------WAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred CCHHHHHHHHHHHHhhC-----ccchhhHH-HHHHHHH----------HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 45566667777777765 44 3455 8888888 889999999999998766433 44444 457
Q ss_pred HHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 042265 86 HTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDA 165 (490)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 165 (490)
+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 788899999999999999874 334556777788889999999999999999876 45555665555555556777679
Q ss_pred HHHHHhccc--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-Ceeh--------HHHHHHHH-----HhcCC---hh
Q 042265 166 QELFDEILY--R-DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR-DAVS--------WGTLVAGY-----AQSDQ---CE 225 (490)
Q Consensus 166 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~l~~~~-----~~~g~---~~ 225 (490)
++.++++.+ | +...+..+..++.+.|-...|.++..+-+.- +... ...+++.- ....+ .+
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 999999954 4 5567788889999999999999998875521 1111 11111110 01122 34
Q ss_pred HHHHHHHHHHhC-CCCCCH-HHH----HHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042265 226 EAIQLFCNMMDL-DIKPDN-IAL----VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIE 299 (490)
Q Consensus 226 ~A~~~~~~m~~~-~~~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 299 (490)
.|+.-++.+... +..|.. ..| .-.+-++...++..++++.|+.+...+.+....+...+.++|...+++++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 455566665542 222322 222 23456778899999999999999999877777789999999999999999999
Q ss_pred HHhccCCCC---------eehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHhhc
Q 042265 300 IFESSQEKN---------LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-----------KPDG---VTILGALVGCSH 356 (490)
Q Consensus 300 ~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~ 356 (490)
+|+.+..++ ......|.-++...+++++|..+++++.+... .||+ ..+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999875422 22246788899999999999999999987321 1222 234445677888
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.|+..+|++.++++.. .-|-|......+.+.+...|.+.+|...++... ..| +..+....+..+...+++++|..+
T Consensus 429 ~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999987 677789999999999999999999999998754 344 777888888889999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHH
Q 042265 435 AEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~ 454 (490)
.+.+.+..|+++ ....|..
T Consensus 507 ~~~l~~~~Pe~~-~~~~l~r 525 (822)
T PRK14574 507 TDDVISRSPEDI-PSQELDR 525 (822)
T ss_pred HHHHHhhCCCch-hHHHHHH
Confidence 999999999998 3334444
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1e-15 Score=135.24 Aligned_cols=410 Identities=13% Similarity=0.050 Sum_probs=260.2
Q ss_pred hHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC----CCcccH-HHHHHHHHcCCCchhHHHHHHHhhhCCCCCC
Q 042265 36 ILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY----PSTFSY-NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPD 110 (490)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 110 (490)
.++..|.+.|. -..-..+|+..++-+.+ ||.-.. -.+...+.+.+.+.+|++.|+-....-...+
T Consensus 202 svl~nlaqqy~----------~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin 271 (840)
T KOG2003|consen 202 SVLFNLAQQYE----------ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN 271 (840)
T ss_pred HHHHHHHHHhh----------hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc
Confidence 34455566666 56667788888876542 333222 2344567777888888888877665421222
Q ss_pred ccc----HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc------------
Q 042265 111 FYS----FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY------------ 174 (490)
Q Consensus 111 ~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------ 174 (490)
..+ .+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+|..
T Consensus 272 k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~ 349 (840)
T KOG2003|consen 272 KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK 349 (840)
T ss_pred hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC
Confidence 222 233333466778888888888887775 47776666666677777888888888887722
Q ss_pred ----CCchhHHH-----HHHHHHhcC--CHHHHHHHHhhCC----CCCee-------------hHHH--------HHHHH
Q 042265 175 ----RDVVSCNT-----LIDGYVKAG--DLAHARQLFDRMP----FRDAV-------------SWGT--------LVAGY 218 (490)
Q Consensus 175 ----~~~~~~~~-----l~~~~~~~~--~~~~a~~~~~~~~----~~~~~-------------~~~~--------l~~~~ 218 (490)
|+....+. .+.-+-+.+ +-++++-.--++. .|+-. .+.. -...+
T Consensus 350 ~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 11111111 111111111 1111111111111 11100 0000 11234
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC------------------------------------CHHHHHHHHHHHHccCChHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKP------------------------------------DNIALVSALSACARLGELEQG 262 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p------------------------------------~~~~~~~l~~~~~~~~~~~~a 262 (490)
.+.|+++.|+++++-+.+..-+. +....+.-.+.....|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 55566666666555544332211 111111111222345788888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC---CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 042265 263 KNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ---EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR 339 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 339 (490)
.+.|++.+...-......|+ +.-.+...|++++|++.|-++. ..+..+...+...|-...++.+|++++.+....
T Consensus 510 ~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 88888887654222222232 3445677888999988887654 356667777778888888999999988776553
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC-CCCCCHHHHHHH
Q 042265 340 IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM-PMGGDVFVWSGL 418 (490)
Q Consensus 340 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 418 (490)
++.|+..+..|...|-+.|+-.+|.+.+-.--+ -++.+..+...|..-|....-+++|+.+|++. ...|+..-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 455677888888899999999999887765544 56778888888988898989999999999885 367899999888
Q ss_pred HHHH-HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 419 LGGC-RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 419 ~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
+..| .+.|++++|.++++...+..|.+...+..|.+.+...|.
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8775 568999999999999999999999999999988887775
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.1e-14 Score=126.20 Aligned_cols=397 Identities=16% Similarity=0.162 Sum_probs=244.9
Q ss_pred HhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccC-------------------CcCCCCCCCCCChhHHHHhhc
Q 042265 9 RCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFK-------------------PISSASSPTTDPLSYALSIFN 69 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~~~~~~g~~~~A~~~~~ 69 (490)
..+-+++.--+|+.|...| .+ .++.+--.|+.+.++- +--|.++=|.|.+.+ ++-
T Consensus 127 S~~EvKDs~ilY~~m~~e~-~~--vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd---L~~ 200 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSEN-VD--VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD---LLF 200 (625)
T ss_pred hhcccchhHHHHHHHHhcC-CC--CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH---HHH
Confidence 3455666778999999988 66 7777666665544311 012334444454444 333
Q ss_pred cCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHH
Q 042265 70 NIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVL 149 (490)
Q Consensus 70 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 149 (490)
+..++...+|..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+-+-.. ..+++.+|....+.||..|+
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhH
Confidence 33445667888888888888888888888888887777888888888887754432 27788888888888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeehHHHHHHHHHhcCChh
Q 042265 150 NSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP----FRDAVSWGTLVAGYAQSDQCE 225 (490)
Q Consensus 150 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 225 (490)
|+++++..+.|+++.|.+.+ .+++.+|+ +|...+|..+|..+.+.++..
T Consensus 277 NalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred HHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 88888888888877665432 22222222 445566666666666666654
Q ss_pred H-HHHHHHHHHhC----CC---CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCC---hhhHHHHHHHHH
Q 042265 226 E-AIQLFCNMMDL----DI---KP-DNIALVSALSACARLGELEQGKNIHRYIELN----QIRVD---SFLSTGLVDFYA 289 (490)
Q Consensus 226 ~-A~~~~~~m~~~----~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~ 289 (490)
+ |..++.+.... -. .| |...|...+..|.+..+.+-|.++...+... -+.|+ ...|..+..+.+
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 3 45555555442 12 23 3446677788888888888888877665543 12232 223455666777
Q ss_pred hcCCHHHHHHHHhccCC----CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-c---H-
Q 042265 290 KCGYINTAIEIFESSQE----KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG-L---V- 360 (490)
Q Consensus 290 ~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~---~- 360 (490)
.....+.-...|+.+.. |+..+...++++....|.++-.-++|.+++..|..-+.....-++..+++.. . .
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 77777778888887764 5666777777777778888888888888887765545444444444444433 1 1
Q ss_pred ----HH-----HHHHHHHhHH----hhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-------CCHHHHHHHHH
Q 042265 361 ----DE-----ARKLFDEMES----VYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-------GDVFVWSGLLG 420 (490)
Q Consensus 361 ----~~-----a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~l~~ 420 (490)
.. |..+++.... .....-.....+.+...+.+.|+.++|.++|.-+..+ |.....-.++.
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 00 1111111111 0012233344566666677777777777776654221 12222234444
Q ss_pred HHHhcCCHHHHHHHHHHHHhhC
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
.....++...|...++-+...+
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC
Confidence 4556666777777777765543
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=2.4e-13 Score=125.70 Aligned_cols=446 Identities=12% Similarity=0.043 Sum_probs=340.1
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--------CCCcccHHHHHHHHH
Q 042265 16 IHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--------YPSTFSYNTIIRAHT 87 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~ 87 (490)
++.++....+. ++ .++.+|..-..+=- ..|+.+.+.+++++-. .-+...|-.=...+-
T Consensus 425 AkkvLNkaRe~--ip--td~~IWitaa~LEE----------~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 425 AKKVLNKAREI--IP--TDREIWITAAKLEE----------ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHhh--CC--CChhHHHHHHHHHH----------hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 45555555553 44 66666665555544 6677777777765431 234555655556666
Q ss_pred cCCCchhHHHHHHHhhhCCCCC--CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 042265 88 LFSSPLNAVVLFSQMRTVSIPP--DFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDA 165 (490)
Q Consensus 88 ~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 165 (490)
..|..--+..+......-|+.- -..||..-...|.+.+.++-+..+|...++- ++.+...|......--..|..++.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 6666666666666665555432 2346777777777888888888888887775 366677777777777777888888
Q ss_pred HHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042265 166 QELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI 239 (490)
Q Consensus 166 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 239 (490)
..+|++.+.. ....|......+...||+..|..++...-+. +...|-.-+.......+++.|..+|.+....
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 8888887443 4556777777788889999999888876532 5667888888888999999999999888764
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CeehHHHHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--K-NLFTWNAML 316 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~ 316 (490)
.|+...|.--+...--.+..++|.+++++.++.- +.-...|..+.+.+-+.++++.|.+.|..-.+ | .+-.|-.+.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 5677777666666667789999999998888763 45566788889999999999999999987765 3 455777777
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCH
Q 042265 317 VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLI 396 (490)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (490)
..--+.|++-.|..++++.+-++.. +...|...|+.-.+.|+.+.|..+..++.+ .++.+...|..-|.+..+.++-
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccc
Confidence 7778888999999999998877543 677888889998999999999999999988 6778888888888888888887
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 397 EEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
..+...+++... |+.....+...+....++++|.+.|.++++.+|++..+|..+...+.+.|.-++-.+++.+....
T Consensus 804 Tks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~- 880 (913)
T KOG0495|consen 804 TKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA- 880 (913)
T ss_pred hHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc-
Confidence 777777776653 67777788888888999999999999999999999999999999999999988888999887654
Q ss_pred CCCCCceeEE
Q 042265 477 IKKNAGCSLI 486 (490)
Q Consensus 477 ~~~~~~~~~~ 486 (490)
.|.-|..|.
T Consensus 881 -EP~hG~~W~ 889 (913)
T KOG0495|consen 881 -EPTHGELWQ 889 (913)
T ss_pred -CCCCCcHHH
Confidence 455565554
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.2e-14 Score=140.06 Aligned_cols=245 Identities=15% Similarity=0.096 Sum_probs=110.5
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCC---chhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSS---PLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLA 130 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 130 (490)
+.|+.+.|+..|.+.. +.++.++-.|.-.-....+ +..++.++...-... +-|+...+.|.+.+.-.|++..+
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHH
Confidence 5566666655555433 2233333333222222222 233444443333321 23444455555555555566665
Q ss_pred HHHHHHHHHhCCC--CchhHHHHHHHHHHhcCChHHHHHHHHhcccCC----chhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 042265 131 QTIHSQVLKLGFI--CDVFVLNSLMHVYCVFHRLRDAQELFDEILYRD----VVSCNTLIDGYVKAGDLAHARQLFDRMP 204 (490)
Q Consensus 131 ~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (490)
..+...+...... .-...|-.+.++|-..|++++|...|.+..+.+ +..+--+...+.+.|+++.+...|+.+.
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 5555555543211 112334455555555666666655555553321 2233344555555566666655555543
Q ss_pred CC---CeehHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH----HHcC
Q 042265 205 FR---DAVSWGTLVAGYAQSD----QCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYI----ELNQ 273 (490)
Q Consensus 205 ~~---~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~ 273 (490)
+. +..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+....- ..+..+|..+ ...+
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKG 447 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcC
Confidence 22 3344444444444443 3344444444444332 2344444444444433222 2223333322 2333
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 274 IRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 274 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
-++.+...|.+...+...|++++|...|+..
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 3455555555555555555555555555443
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1e-14 Score=128.10 Aligned_cols=347 Identities=12% Similarity=0.069 Sum_probs=239.6
Q ss_pred CCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC----CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCC
Q 042265 32 SPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP----YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSI 107 (490)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 107 (490)
|..+.++.+||..++ |--..+.|.+++++-. +-+..+||.+|.+-. +..-.+++.+|....+
T Consensus 204 PKT~et~s~mI~Gl~----------K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLC----------KFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKM 269 (625)
T ss_pred CCCchhHHHHHHHHH----------HHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhc
Confidence 388999999999999 8999999999998765 346778888887643 2333789999999999
Q ss_pred CCCcccHHHHHHHHhccCCcHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH-HHHHHHhc--------cc
Q 042265 108 PPDFYSFPFLLRACSQLCSHSL----AQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRD-AQELFDEI--------LY 174 (490)
Q Consensus 108 ~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~--------~~ 174 (490)
.||..|||+++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++..+ .+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998765 56788999999999999999999999999988755 44444444 11
Q ss_pred ---C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-----------CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042265 175 ---R-DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR-----------DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI 239 (490)
Q Consensus 175 ---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 239 (490)
| |...|..-+..|.+..|.+-|.++-.-.... ...-|..+....+.....+.-...|+.|+-+-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2 5557788888898999999998887665422 123466777888888999999999999999888
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee---hHHHHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF---TWNAML 316 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~ 316 (490)
-|+..+...++++....+.++-..+++..+...|..........++..+++..- .|+.. -+....
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAF 497 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHH
Confidence 899999999999999999999999999999888755444444444444443320 11101 011111
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHH---HHHhhhhhc
Q 042265 317 VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYG---CMADLLGRA 393 (490)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~ 393 (490)
.-++ ..-.+.....-.+|.+.... ....+..+-.+.+.|..++|.+++..+.+.+.-.|.....+ .+++.-.+.
T Consensus 498 ak~a-ad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 498 AKCA-ADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHH-HHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 1000 00011111122334433332 33445555555666777777777766654433334333344 344444556
Q ss_pred CCHHHHHHHHhhCC
Q 042265 394 GLIEEALEMIKKMP 407 (490)
Q Consensus 394 g~~~~A~~~~~~~~ 407 (490)
.....|..+++-+.
T Consensus 575 ~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 575 NSPSQAIEVLQLAS 588 (625)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666553
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=2.6e-14 Score=136.82 Aligned_cols=311 Identities=17% Similarity=0.181 Sum_probs=188.3
Q ss_pred CChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhh---CCCCCeehHHHHHHHHHhcCChhHHHHHHHH
Q 042265 160 HRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDR---MPFRDAVSWGTLVAGYAQSDQCEEAIQLFCN 233 (490)
Q Consensus 160 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (490)
|++++|.+++.++++. ....|.+|...|-..|+.+++...+-. +.+.|...|..+.....+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5555555555554332 333455555555555555555444322 2223444555555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHH----HHHHHHHhcCCHHHHHHHHhccCC---
Q 042265 234 MMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLST----GLVDFYAKCGYINTAIEIFESSQE--- 306 (490)
Q Consensus 234 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~--- 306 (490)
.++.. +++...+-.-...|-+.|+...|..-|.++.....+.|..-+. ..++.+...++-+.|.+.++....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 55543 2333333344444555555555555555555443222222222 123334444444555555544332
Q ss_pred --CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHHHhhcc
Q 042265 307 --KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR---------------------------IKPDGVTILGALVGCSHA 357 (490)
Q Consensus 307 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---------------------------~~p~~~~~~~l~~~~~~~ 357 (490)
-+...++.++..+.+...++.|......+.... ..++...+ .+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcc
Confidence 133345555556666666666655555554411 22222221 122233444
Q ss_pred CcHHHHHHHHHHhHHhhC--CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 042265 358 GLVDEARKLFDEMESVYG--VSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG---DVFVWSGLLGGCRIHGNVEIAE 432 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 432 (490)
...+....+..-.... . ..-+...|.-+.++|...|++.+|+++|..+...+ +...|..++.+|...|.++.|+
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 4444444455545443 4 34466788999999999999999999999988665 7889999999999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 433 AAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+.|++++...|++..+...|+..+.+.|+.++|.+.+..+.
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999876
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=3e-17 Score=147.94 Aligned_cols=258 Identities=17% Similarity=0.120 Sum_probs=113.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNI-ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC 291 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (490)
.+...+.+.|++++|++++++......+|+.. .+..+...+...++.+.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667778888888888886654443234443 34445556667788888888888888775 3466667777776 688
Q ss_pred CCHHHHHHHHhccCC--CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 042265 292 GYINTAIEIFESSQE--KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR-IKPDGVTILGALVGCSHAGLVDEARKLFD 368 (490)
Q Consensus 292 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (490)
+++++|.++++..-+ +++..+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876543 456677778888899999999999999977643 34567778888888999999999999999
Q ss_pred HhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 369 EMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG--GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+..+ ..|.|......++..+...|+.+++.++++..... .++..+..+..++...|++++|...++++.+..|+|+
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9998 44556788888999999999999988887765422 2667788999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.+...++.++...|+.++|.++.++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=7.3e-14 Score=123.72 Aligned_cols=391 Identities=13% Similarity=0.094 Sum_probs=270.9
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHH-HHHHHHhccCCcHHHHHHHHHHHHhCCCCch----hHHHHHHHHH
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFP-FLLRACSQLCSHSLAQTIHSQVLKLGFICDV----FVLNSLMHVY 156 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~ 156 (490)
|..-|..+....+|+..|+-+.+...-|+.-... .+.+.+.+.+++.+|+++++..+..-...+. .+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3445666677889999999988877777766543 3456677888999999999988775322222 3345555568
Q ss_pred HhcCChHHHHHHHHhccc--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----C----------C--eehHHH-----
Q 042265 157 CVFHRLRDAQELFDEILY--RDVVSCNTLIDGYVKAGDLAHARQLFDRMPF----R----------D--AVSWGT----- 213 (490)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----------~--~~~~~~----- 213 (490)
.+.|+++.|...|+...+ |+..+-..|+-++...|+-++..+.|.+|.. + | ....+.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 899999999999999854 5666555566667778999999999988751 1 1 111111
Q ss_pred HHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHH-------------HH--------HHHHHHHHccCChHHHHHHHHHHH
Q 042265 214 LVAGYAQSD--QCEEAIQLFCNMMDLDIKPDNI-------------AL--------VSALSACARLGELEQGKNIHRYIE 270 (490)
Q Consensus 214 l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~-------------~~--------~~l~~~~~~~~~~~~a~~~~~~~~ 270 (490)
.++-.-+.+ +.++++-.-.+++.--+.|+-. .+ ..-...+.+.|+++.|.++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 111121211 1222222222222222223211 00 011234678999999999998877
Q ss_pred HcCCCCChhhHHHHHHH------------------------------------HHhcCCHHHHHHHHhccCCCCeehHHH
Q 042265 271 LNQIRVDSFLSTGLVDF------------------------------------YAKCGYINTAIEIFESSQEKNLFTWNA 314 (490)
Q Consensus 271 ~~~~~~~~~~~~~l~~~------------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~ 314 (490)
+..-..-...-+.|... ....|++++|.+.|++....|...-.+
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 65322211111111111 113578889999998888776654444
Q ss_pred HH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 315 ML---VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 315 l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
|. -.+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+... -++.|+.....|.+.|-
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhh
Confidence 43 3466789999999999877553 234667777788888889999999999998887 67889999999999999
Q ss_pred hcCCHHHHHHHH-hhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 392 RAGLIEEALEMI-KKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 392 ~~g~~~~A~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+.|+-..|.+.. +..+--| +..+..-|...|....-+++++.+|+++.-+.|+-......++.++.+.|+|.+|.+++
T Consensus 604 qegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999875 4455555 88888888888999999999999999999999987655556677788999999999999
Q ss_pred HHHhcC
Q 042265 470 RSLDAG 475 (490)
Q Consensus 470 ~~m~~~ 475 (490)
+...++
T Consensus 684 k~~hrk 689 (840)
T KOG2003|consen 684 KDIHRK 689 (840)
T ss_pred HHHHHh
Confidence 988654
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5e-13 Score=119.62 Aligned_cols=386 Identities=12% Similarity=0.023 Sum_probs=260.9
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCCCCC-cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPD-FYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
-....-+.++|++++|++.|.+.++. .|| +..|.....+|...|+|+++.+--...++.+ |.-+..+..-.+++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHh
Confidence 34555678899999999999999985 688 6778888888999999999998888877754 3335567777788888
Q ss_pred cCChHHHHHHHHhcc---cCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--------------------------Cee
Q 042265 159 FHRLRDAQELFDEIL---YRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR--------------------------DAV 209 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~ 209 (490)
.|++++|+.-.--.. .-+..+...++.-..+.--...+.+-+..-..| ...
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 898888764321110 000001111111111111112222222211111 011
Q ss_pred hHHHHHHHHHh--cC---ChhHHHHHHHHHHhC-CCCC-----C------HHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 210 SWGTLVAGYAQ--SD---QCEEAIQLFCNMMDL-DIKP-----D------NIALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 210 ~~~~l~~~~~~--~g---~~~~A~~~~~~m~~~-~~~p-----~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
....+..++.. .+ .+.+|...+.+-... -..+ | ..+.......+.-.|+.-.+..-|+..++.
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 22222222111 11 233443333332110 0011 1 112222222334567888899999998887
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 042265 273 QIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG 349 (490)
Q Consensus 273 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 349 (490)
. +.+...|..+..+|....+.++....|++..+ .|+.+|..-.+...-.+++++|..=|++.+.... -+...|..
T Consensus 356 ~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQ 433 (606)
T KOG0547|consen 356 D-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQ 433 (606)
T ss_pred C-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHH
Confidence 6 33444477778889999999999999988764 4778899989999999999999999999987532 24566777
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-------CHHHH--HHHH
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-------DVFVW--SGLL 419 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~~~~~--~~l~ 419 (490)
+-.+..+.+.++++...|++..+ .+|..+..|+.....+...+++++|.+.|+... ..| ++..+ ..++
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 77777789999999999999999 788889999999999999999999999998753 222 22221 1222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
. +.-.+++..|+.+++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 512 ~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 512 V-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred h-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 2234899999999999999999999999999999999999999999998753
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.8e-12 Score=115.62 Aligned_cols=391 Identities=13% Similarity=0.066 Sum_probs=246.7
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCCcHHHHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY-SFPFLLRACSQLCSHSLAQT 132 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~ 132 (490)
..+++..|..+|++.. ..++..|-..+..-.++.....|..+++..... -|-+. .|--.+..--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4677888999998764 467778888999999999999999999998864 34332 34444444456799999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc--ccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----
Q 042265 133 IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEI--LYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---- 206 (490)
Q Consensus 133 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 206 (490)
+|+.-.+ ..|+...|.+.|+.-.+...++.|..++++. ..|++.+|--....-.+.|.+..|..+|+...+.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 9999877 5899999999999999999999999999997 6789999998888888999999999999876532
Q ss_pred --CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------------------------------------------CC
Q 042265 207 --DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI-------------------------------------------KP 241 (490)
Q Consensus 207 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-------------------------------------------~p 241 (490)
+...+.+...--.++..++.|.-+|+-.++.-. +-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 233444444444455556666555555444311 12
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChh--hHHHHHH--------HHHhcCCHHHHHHHHhccCC---CC
Q 042265 242 DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSF--LSTGLVD--------FYAKCGYINTAIEIFESSQE---KN 308 (490)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~--------~~~~~~~~~~A~~~~~~~~~---~~ 308 (490)
|-.++--.+..-...|+.+...++|+.+...- ||-.. .|...|- .-....+.+.+.++|+...+ ..
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence 23333333444444455555555555544432 22110 0111110 01123444444444443332 12
Q ss_pred eehHHH----HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHH
Q 042265 309 LFTWNA----MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYG 384 (490)
Q Consensus 309 ~~~~~~----l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (490)
..||.- ...-..++.+...|.+++...+ |.-|...+|...|..-.+.++++....+|++... -.|.+..+|.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 222222 2222234556666666665544 3456666666666666666777777777777766 3444566666
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 385 CMADLLGRAGLIEEALEMIKKMPMGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
.....=...|+.+.|..+|+-....| ....|.+.|..-...|.++.|..+++++++..+... +|.+.+..-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 66666666777777777777666666 334555555555667777777777777777666444 5655554433
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.7e-13 Score=129.27 Aligned_cols=275 Identities=13% Similarity=0.075 Sum_probs=170.4
Q ss_pred cCCHHHHHHHHhhCCCC--Cee-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCChHHHHH
Q 042265 190 AGDLAHARQLFDRMPFR--DAV-SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALV--SALSACARLGELEQGKN 264 (490)
Q Consensus 190 ~~~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 264 (490)
.||++.|++.+....+. ++. .|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555543322 122 2222233445666666666666666553 33332221 22445566666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCe---e--------hHHHHHHHHHHcCChHHHHHHHH
Q 042265 265 IHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL---F--------TWNAMLVGLAMHGLGRLSLVYFS 333 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--------~~~~l~~~~~~~~~~~~A~~~~~ 333 (490)
.++.+.+.. |-++.+...+...|.+.|++++|.+++..+.+... . +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666655 45556666666666666666666666665554211 1 22222333333444555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-C
Q 042265 334 RMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-D 411 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~ 411 (490)
.+.+. .+.++.....+...+...|+.++|.+.+++..+. +++.... ++.+....++.+++.+..++.. ..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 55332 2346667777788888888888888888877753 3444222 2333345588888888887754 444 7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 412 VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+..+..+...|.+.+++++|.+.|+++.+..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77788888888888999999999999988888765 677888888899999999888886643
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.9e-13 Score=117.64 Aligned_cols=327 Identities=14% Similarity=0.056 Sum_probs=250.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCe-ehHHHHHHHHHhc
Q 042265 143 ICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDA-VSWGTLVAGYAQS 221 (490)
Q Consensus 143 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~ 221 (490)
..|...+-.....+.+.|..+.|...|...+..-+..|.+.+....-..+.+.+..+.......+. ..=--+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 455555555555677789999999999998877666777666665555566655555544443211 1112244566666
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHH--
Q 042265 222 DQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQI--RVDSFLSTGLVDFYAKCGYINTA-- 297 (490)
Q Consensus 222 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A-- 297 (490)
.+.+++..-.+.....|.+-+...-+....+.....|+|+|+.+|+++.+... -.|..+|+.++ |.+..+..-+
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~L 318 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHH
Confidence 78888988888888888766666556666677788999999999999998841 12456777666 4443322221
Q ss_pred HHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCC
Q 042265 298 IEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVS 377 (490)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 377 (490)
-...-.+.+--+.|...+.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+-|+.+.+ -.|
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p 395 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INP 395 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCc
Confidence 12222334445677788888899999999999999999986422 456778888889999999999999999998 667
Q ss_pred CCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 378 KELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
.|-..|-.|.++|.-.+...-|+-.|++.. .+| |...|.+|+.+|.+.++.++|+..|+++......+..++..|+.+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 788999999999999999999999999865 455 999999999999999999999999999999777777899999999
Q ss_pred HHhcCChHHHHHHHHHHhc
Q 042265 456 YANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~ 474 (490)
|.+.++..+|...+++-.+
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988765
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=4.3e-11 Score=111.16 Aligned_cols=384 Identities=11% Similarity=0.028 Sum_probs=259.9
Q ss_pred HHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcC
Q 042265 85 AHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQV----LKLGFICDVFVLNSLMHVYCVFH 160 (490)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g 160 (490)
++++..-++.|..++++.++. ++.+...|.+-...--.+|+.+....++++- ...|+..+..-|..=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 345555666777777777654 5556666666666556667776666665543 33566666666666666666666
Q ss_pred ChHHHHHHHHhcccC------CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHH
Q 042265 161 RLRDAQELFDEILYR------DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
..-.+..+....+.- -..+|..-...|.+.+.++-|..+|....+- +...|...+..--..|..+....+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666665555322 2246777777777777777777777665432 4556666666666677778888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CCe
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--KNL 309 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~ 309 (490)
++++..- +-....+.......-..|+...|..++..+.+.. +.+...+.+-+.....+.+++.|..+|.+... +..
T Consensus 574 qkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 8877652 2233444455566667788888888888877775 45677777777888888888888888877654 455
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
..|.--+...--.+..++|.+++++.++. .|+ ...|..+.+.+...++++.|...|..-.+ .++..+..|-.|.+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHH
Confidence 66666666666677788888888777664 343 34566667777777888888877777665 55666667777777
Q ss_pred hhhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------------
Q 042265 389 LLGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED--------------------- 445 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--------------------- 445 (490)
.=.+.|.+-.|..+|++...+ | +...|...+..-.+.|+.+.|..+..++++..|.+
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence 777778888888888775533 3 77788888888888888888888887777755543
Q ss_pred ---------CchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 446 ---------GGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 446 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+.+...++..+....+++.|.+.|.+....
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 335556666666777777777777766544
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.7e-12 Score=113.46 Aligned_cols=308 Identities=14% Similarity=0.116 Sum_probs=187.3
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHH--HHHHHHhccCCcHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFP--FLLRACSQLCSHSLAQTIH 134 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~ 134 (490)
+.|....|...|......-+..|.+-+....-..+.+.+. ... .|.+.|...+. .+..++....+.+++.+-.
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~-~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILV-VGLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHH-hcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777776554333344443333222222222211 111 11222211111 2334445555777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC------CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Q 042265 135 SQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR------DVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDA 208 (490)
Q Consensus 135 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (490)
+.....|++.+...-+....+.....++++|+.+|+++.+. |..+|..++-+-.....+.--......+.+--+
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ 330 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRP 330 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCc
Confidence 77788887777777677777777788888888888888665 334565555443322222221112222222245
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFY 288 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 288 (490)
.|..++.+-|.-.++.++|...|+..++.+ +-....|+.+..-|...++...|.+-++.+++.+ |.|-..|-.|.++|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 666677777777777777777777777654 2234466666677777777777777777777766 66777777777777
Q ss_pred HhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 042265 289 AKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARK 365 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 365 (490)
.-.+...-|+-+|++..+ .|...|.+|..+|.+.++.++|++.|++....|- .+...+..|...+.+.++.++|..
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHH
Confidence 777777777777776553 3666777777777777777777777777766542 255666777777777777777777
Q ss_pred HHHHhHH
Q 042265 366 LFDEMES 372 (490)
Q Consensus 366 ~~~~~~~ 372 (490)
.|++..+
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 7766655
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=3.6e-11 Score=115.74 Aligned_cols=454 Identities=11% Similarity=0.043 Sum_probs=259.2
Q ss_pred HHHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhcc---CCCCCcccHHHHH
Q 042265 7 IKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNN---IPYPSTFSYNTII 83 (490)
Q Consensus 7 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li 83 (490)
+=+-|+++.+..|...++++. . .++..|-.|...|- ..|+.+++...+-. +.+.|..-|-.+.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p---~~~~ay~tL~~IyE----------qrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-P---RNPIAYYTLGEIYE----------QRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-c---cchhhHHHHHHHHH----------HcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 334466677777777777765 2 56667777777777 67777777766532 3455666777777
Q ss_pred HHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhc
Q 042265 84 RAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLN----SLMHVYCVF 159 (490)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~ 159 (490)
....+.|.+++|.-+|.+..+.. +++...+--=...|-+.|+...|.+.|.++.+...+.|..-+. ..+..+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777777653 3333333333455666677777777777777654222222222 234445556
Q ss_pred CChHHHHHHHHhcccC-----CchhHHHHHHHHHhcCCHHHHHHHHhhCCC----C----------------------Ce
Q 042265 160 HRLRDAQELFDEILYR-----DVVSCNTLIDGYVKAGDLAHARQLFDRMPF----R----------------------DA 208 (490)
Q Consensus 160 g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----------------------~~ 208 (490)
++-+.|.+.++..... +...++.++..+.+...++.|......+.. + +.
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 6667777776666431 344566667777776666666665544322 0 11
Q ss_pred ehHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHH
Q 042265 209 VSWG----TLVAGYAQSDQCEEAIQLFCNMMDLDIKP--DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLST 282 (490)
Q Consensus 209 ~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (490)
..|. -++-++...+..+....+.....+..+.| +...|.-+..++...|++..|..++..+.......+..+|-
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 1111 12222333333333333444444444223 34467777778888888888888888887775555677788
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHH
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQEKNL---FTWNAMLVGLAMHGLGRLSLVYFSRMI--------EARIKPDGVTILGAL 351 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~--------~~~~~p~~~~~~~l~ 351 (490)
.+..+|...|.++.|.+.|+.+..-++ ..--.|...+.+.|+.++|.+++..+. ..+..|+........
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 888888888888888888887765333 333445556777888888888877753 222344444444445
Q ss_pred HHhhccCcHHHHHHHHHHhHHhh----C-----------------CCCCchHHHHHHhhhhhcCCHHHHHHHHhhC----
Q 042265 352 VGCSHAGLVDEARKLFDEMESVY----G-----------------VSKELKHYGCMADLLGRAGLIEEALEMIKKM---- 406 (490)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~----~-----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 406 (490)
..+...|+.++=..+-..|...+ - .+........++.+-.+.++......-+..-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 55666676665444433333210 0 0111112222333333333322222111110
Q ss_pred --CCCC-CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCC--chHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 407 --PMGG-DV----FVWSGLLGGCRIHGNVEIAEAAAEHVMK----LKPEDG--GVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 407 --~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
..++ +. ..+.-++..+.+.+++++|..+...+.+ ..++.. ..-...+.+....+++.+|...++.|.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0011 11 2344566677888999999999998888 122211 123344556668888999998888887
Q ss_pred cC
Q 042265 474 AG 475 (490)
Q Consensus 474 ~~ 475 (490)
..
T Consensus 694 ~~ 695 (895)
T KOG2076|consen 694 TQ 695 (895)
T ss_pred HH
Confidence 54
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=2.6e-12 Score=121.20 Aligned_cols=276 Identities=13% Similarity=0.018 Sum_probs=194.5
Q ss_pred cCChHHHHHHHHhcccC--Cch-hHHHHHHHHHhcCCHHHHHHHHhhCCCCCee--hHH--HHHHHHHhcCChhHHHHHH
Q 042265 159 FHRLRDAQELFDEILYR--DVV-SCNTLIDGYVKAGDLAHARQLFDRMPFRDAV--SWG--TLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~l~~~~~~~g~~~~A~~~~ 231 (490)
.|++++|.+.+....+. ++. .|.....+..+.|+++.|.+.+.++.+.+.. ... .....+...|+++.|.+.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46666666666654332 122 2222233335667777777777666543222 122 2255677788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDS-------FLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
+++.+.. +-+......+...|.+.|++++|..++..+.+.+..++. .++..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 8877764 334556677777888888888888888888777543222 12233344444455667777777776
Q ss_pred CC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCch
Q 042265 305 QE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELK 381 (490)
Q Consensus 305 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 381 (490)
.+ .++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+...+ ..+.|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHH
Confidence 54 46778888899999999999999999998874 4454322 23344456999999999999998 5667777
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
.+..+...+.+.|++++|.+.|+... ..|+...+..+...+.+.|+.++|.+++++.+.+
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88899999999999999999999865 5688888889999999999999999999998773
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.3e-13 Score=128.07 Aligned_cols=279 Identities=11% Similarity=0.036 Sum_probs=220.0
Q ss_pred CCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHH
Q 042265 191 GDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI--KPDNIALVSALSACARLGELEQGKNI 265 (490)
Q Consensus 191 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~ 265 (490)
-+..+|...|.+.... +......+.++|...+++++|.++|+.+.+... .-+...|.+.+..+-+ +-+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3567888888885432 345667788999999999999999999887521 1256688888776533 222333
Q ss_pred H-HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCC---eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 042265 266 H-RYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKN---LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK 341 (490)
Q Consensus 266 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 341 (490)
+ +.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+.. .
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--D 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--C
Confidence 3 2333333 6778999999999999999999999999988654 467788878888899999999999988653 2
Q ss_pred CC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHH
Q 042265 342 PD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGL 418 (490)
Q Consensus 342 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l 418 (490)
|. -..|--+...|.++++++.|+-.|+++.+ --+.+......+...+.+.|+.++|+.++++.. ..| |+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 22 23444567779999999999999999987 455567777888889999999999999999854 333 66666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 419 LGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
+..+...+++++|...++++.+.-|++..+|..++..|.+.|+.+.|..-|.-+.+...+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 777888999999999999999999999999999999999999999999998887665433
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=3.4e-11 Score=107.68 Aligned_cols=402 Identities=11% Similarity=0.052 Sum_probs=305.5
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
-+...|-.....-..++++..|..+|+...... ..+...|...+.+-.++..+..|..+++..+..- |--...|-..+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHH
Confidence 355667666666777889999999999998754 4456667777777788999999999999998853 33345666677
Q ss_pred HHHHhcCChHHHHHHHHhc--ccCCchhHHHHHHHHHhcCCHHHHHHHHhhC--CCCCeehHHHHHHHHHhcCChhHHHH
Q 042265 154 HVYCVFHRLRDAQELFDEI--LYRDVVSCNTLIDGYVKAGDLAHARQLFDRM--PFRDAVSWGTLVAGYAQSDQCEEAIQ 229 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 229 (490)
.+--..|++..|.++|++- -+|+...|.+.|+.-.+.+.++.|..++++. ..|++.+|--..+.-.+.|+...|..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 7777789999999999987 5689999999999999999999999999984 47899999999999999999999999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHH----
Q 042265 230 LFCNMMDL-DI-KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVD--SFLSTGLVDFYAKCGYINTAIEIF---- 301 (490)
Q Consensus 230 ~~~~m~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~---- 301 (490)
+|...++. |- ..+...+.+....-.+...++.|..+|+-.++.- |.+ ...|..+...--+-|+.....+..
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 99988764 11 1122334444444456778889999999888763 333 345555554444556544444332
Q ss_pred ----hccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHh---hccCcHHHHH
Q 042265 302 ----ESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGV-------TILGALVGC---SHAGLVDEAR 364 (490)
Q Consensus 302 ----~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~~g~~~~a~ 364 (490)
+...+. |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|..+--+| ....|.+.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 333333 4456666777777889999999999999876 455321 222221122 3578899999
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhh----hcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLG----RAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVM 439 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 439 (490)
++|+...+ -+|....||..+--+|+ ++.++..|.+++-... ..|-..++...|..-.+.++++....++++.+
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988 56667777776655554 7789999999997754 56788899999999899999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCC
Q 042265 440 KLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNA 481 (490)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 481 (490)
+..|.+..+|...+..-...|+++.|..+|+...++..-..|
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 999999999999999999999999999999988877654444
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=1.3e-12 Score=124.07 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchH--HHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CH--HHHH
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKH--YGCMADLLGRAGLIEEALEMIKKMP-MGG-DV--FVWS 416 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~--~~~~ 416 (490)
+...+..+...+...|+.++|.+.+++..+. .+.+... .....-.....++.+.+.+.+++.. ..| ++ ....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 4455555556666666666666666666652 2222210 0111111122355556666665532 333 44 5556
Q ss_pred HHHHHHHhcCCHHHHHHHHH--HHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 417 GLLGGCRIHGNVEIAEAAAE--HVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
++...+.+.|++++|.+.|+ .+.+..|++. .+..++..+.+.|+.++|.+++++-
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777777777777777777 3445666544 4557777777777777777777664
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.1e-13 Score=126.79 Aligned_cols=277 Identities=14% Similarity=0.066 Sum_probs=199.5
Q ss_pred ChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChhHHHHHH
Q 042265 161 RLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR------DAVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
+..+|...|+.+... .......+..+|...+++++|.++|+.+... +...|.+.+-.+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 345666666664322 2234455666777777777777777766532 556677666554332 122222
Q ss_pred -HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee
Q 042265 232 -CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF 310 (490)
Q Consensus 232 -~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 310 (490)
+++.+.. +-.+.+|..+.++|+-+++.+.|++.|++..+.. +-...+|+.+..-+.....+|+|...|+.....|+.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2233322 3456688888888888888888888888887765 446777887888888888888888888888877666
Q ss_pred hHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHH
Q 042265 311 TWNA---MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMA 387 (490)
Q Consensus 311 ~~~~---l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 387 (490)
.||+ +...|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|+++++++.. -.+.|+..--..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHH
Confidence 5554 566788999999999999988875422 556666777778889999999999999887 4555665555667
Q ss_pred hhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 388 DLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
..+...+++++|+..+++++. .| +...+..++..|.+.|+.+.|+..|.-+.+++|...
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 778888999999999998763 34 677788888889999999999999999999999755
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=5.3e-12 Score=119.82 Aligned_cols=278 Identities=12% Similarity=0.001 Sum_probs=184.5
Q ss_pred hcCChHHHHHHHHhcccC--Cc-hhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCe--ehHHHHHHHHHhcCChhHHHHH
Q 042265 158 VFHRLRDAQELFDEILYR--DV-VSCNTLIDGYVKAGDLAHARQLFDRMPF--RDA--VSWGTLVAGYAQSDQCEEAIQL 230 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~~ 230 (490)
..|+++.|.+.+.+..+. ++ ..+-....+..+.|+.+.|.+.+.+..+ |+. .........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 356666666666555332 21 1223334445566666666666666432 222 2233346677777888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH---H----hcCCHHHHHHHHhc
Q 042265 231 FCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFY---A----KCGYINTAIEIFES 303 (490)
Q Consensus 231 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~~~~~ 303 (490)
++.+.+.. +-+...+..+...+...|+++++.+.+..+.+.+..+.......-..++ . .....+...+.++.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88877764 2345566777777788888888888888887776433222211111111 1 22233455555555
Q ss_pred cCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHH-HHHhhccCcHHHHHHHHHHhHHhhCCC
Q 042265 304 SQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVT--ILGA-LVGCSHAGLVDEARKLFDEMESVYGVS 377 (490)
Q Consensus 304 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~ 377 (490)
..+ .++..+..+...+...|+.++|.+.+++..+.. |+... +..+ .......++.+.+.+.++...+ ..+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p 330 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVD 330 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCC
Confidence 553 377788888899999999999999999998863 33331 1111 1222345788889999988887 444
Q ss_pred CCc--hHHHHHHhhhhhcCCHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 378 KEL--KHYGCMADLLGRAGLIEEALEMIKK---MPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 378 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.|+ ....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455 6677899999999999999999993 34578888888999999999999999999999876
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.2e-14 Score=131.05 Aligned_cols=252 Identities=16% Similarity=0.100 Sum_probs=83.4
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCH
Q 042265 118 LRACSQLCSHSLAQTIHSQVLKLG-FICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDL 193 (490)
Q Consensus 118 l~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 193 (490)
...+.+.|++++|.++++...... .+.+...|..+.......++.+.|.+.++++... ++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 344444455555555553322221 1223333333444444445555555555554332 12233333333 345555
Q ss_pred HHHHHHHhhCCC--CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 042265 194 AHARQLFDRMPF--RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLD-IKPDNIALVSALSACARLGELEQGKNIHRYIE 270 (490)
Q Consensus 194 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 270 (490)
++|.++++..-+ +++..+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|...+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555544321 244555566666677777777777777765432 23455566666667777777777777777777
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC---CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 042265 271 LNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ---EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTI 347 (490)
Q Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 347 (490)
+.. |.+..+...++..+...|+.+++.++++... ..|+..+..+..++...|++++|+.+|++..... +.|....
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~ 251 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWL 251 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccc
Confidence 664 4456666667777777777666555554433 3455666666777777777777777777766542 2256666
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
..+..++...|+.++|.++.+++.+
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 6667777777777777777666544
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.8e-12 Score=114.21 Aligned_cols=263 Identities=11% Similarity=0.003 Sum_probs=213.9
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
++.....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+++.- |..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34445555667788899999999999998874 5566666666778888898888777777777764 777889999999
Q ss_pred HHHhcCCHHHHHHHHhccCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQEKNL---FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEA 363 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 363 (490)
-|...|+.++|++.|.+...-|. ..|-.+...|.-.|..++|+..+...-+.= +-...-+--+..-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999998775443 579999999999999999999998776631 11111122233447789999999
Q ss_pred HHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 364 RKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP--------MGG-DVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.++|.++.. -.|.|+...+-+.-.....+.+.+|..+|+... +.+ -..+++.++.+|.+.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999987 567788888888888888999999999998643 111 456789999999999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 435 AEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+++++.+.|.++.++.+++..|...|+++.|.+.|.+...
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987643
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.4e-11 Score=103.52 Aligned_cols=287 Identities=10% Similarity=0.021 Sum_probs=157.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 042265 125 CSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP 204 (490)
Q Consensus 125 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (490)
++.++|.+.|-+|.+.. +.+.++..+|.+.|-+.|..|+|+.+.+.+......|++.-..
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~l------------------- 108 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLL------------------- 108 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHH-------------------
Confidence 45566666666665533 3344455555666666666666666655554332222221111
Q ss_pred CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----hhh
Q 042265 205 FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVD----SFL 280 (490)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 280 (490)
+...|.+-|...|-+|.|+.+|..+.+.+ ..-......|+..|....+|++|+++-+++.+.+..+. ...
T Consensus 109 -----Al~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf 182 (389)
T COG2956 109 -----ALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF 182 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 11123333444444444544444444432 12223344444445555555555555444444432221 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 357 (490)
|..|...+....+.+.|..++++..+. .+..--.+.......|+++.|++.|+...+.+..--+.+...|..+|...
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 444555555556666666666665543 23334445566777788888888888877765444456677778888888
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHH---hcCCHHHHHH
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMI-KKMPMGGDVFVWSGLLGGCR---IHGNVEIAEA 433 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~ 433 (490)
|+.++....+.++.+. .+....-..+.+.-....-.+.|...+ +.+..+|+...+..++..-. ..|...+-..
T Consensus 263 g~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~ 339 (389)
T COG2956 263 GKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLD 339 (389)
T ss_pred CCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHH
Confidence 8888888888887764 233334444444444444445555444 55777888888888887643 2344566666
Q ss_pred HHHHHHh
Q 042265 434 AAEHVMK 440 (490)
Q Consensus 434 ~~~~~~~ 440 (490)
.++.|+.
T Consensus 340 ~lr~mvg 346 (389)
T COG2956 340 LLRDMVG 346 (389)
T ss_pred HHHHHHH
Confidence 6666665
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=7.9e-11 Score=113.04 Aligned_cols=428 Identities=12% Similarity=0.044 Sum_probs=265.4
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC----CCcccHHHHHHHHHcCCCch
Q 042265 18 QIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY----PSTFSYNTIIRAHTLFSSPL 93 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~ 93 (490)
..+.++...| +. |+..+|.+||.-|+ ..|+++.|- +|..|.- -+...|+.++.++.+.++.+
T Consensus 11 nfla~~e~~g-i~--PnRvtyqsLiarYc----------~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~E 76 (1088)
T KOG4318|consen 11 NFLALHEISG-IL--PNRVTYQSLIARYC----------TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAE 76 (1088)
T ss_pred hHHHHHHHhc-CC--CchhhHHHHHHHHc----------ccCCCcccc-chhhhhcccccccchhHHHHHhccccccccc
Confidence 5778889999 77 99999999999999 999999998 8887763 35668999999999999888
Q ss_pred hHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHH---HHHHHHHHHH----hCCC-Cchh-------------HHHHH
Q 042265 94 NAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSL---AQTIHSQVLK----LGFI-CDVF-------------VLNSL 152 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~----~g~~-~~~~-------------~~~~l 152 (490)
.+. .|...||..|..+|.+.||+.. .++-++.+.. .|+. |... --...
T Consensus 77 npk-----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ 145 (1088)
T KOG4318|consen 77 NPK-----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA 145 (1088)
T ss_pred CCC-----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH
Confidence 766 5888999999999999998765 2222222221 2211 1111 11223
Q ss_pred HHHHHhcCChHHHHHHHHhcccC--CchhHHHHHHHHHh-cCCHHHHHHHHhhCCC-CCeehHHHHHHHHHhcCChhHHH
Q 042265 153 MHVYCVFHRLRDAQELFDEILYR--DVVSCNTLIDGYVK-AGDLAHARQLFDRMPF-RDAVSWGTLVAGYAQSDQCEEAI 228 (490)
Q Consensus 153 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 228 (490)
+....-.|-++.+++++..++.. +. +....++-+.. ...+++-..+-....+ +++.+|..++.+....|+.+.|.
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 33444556667777777665322 11 11112222222 2234444444444444 68889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH---------
Q 042265 229 QLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIE--------- 299 (490)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--------- 299 (490)
.++.+|.+.|++.+.+-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....+.+
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 999999999988888877777655 77888888888889999999998888776655555333221110
Q ss_pred ---------------HHhc---------cCC-------CCeehHHHHHHHHHHcCCh-----------------------
Q 042265 300 ---------------IFES---------SQE-------KNLFTWNAMLVGLAMHGLG----------------------- 325 (490)
Q Consensus 300 ---------------~~~~---------~~~-------~~~~~~~~l~~~~~~~~~~----------------------- 325 (490)
.++. .++ ....+|....... .+|.-
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHH
Confidence 0000 000 0011121111111 01110
Q ss_pred ---HHHHHHHHHHHHCC-----------------------------CCCCHH----------------------------
Q 042265 326 ---RLSLVYFSRMIEAR-----------------------------IKPDGV---------------------------- 345 (490)
Q Consensus 326 ---~~A~~~~~~m~~~~-----------------------------~~p~~~---------------------------- 345 (490)
+.+.+.|.+..... ..||..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 01112222221100 011111
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLG 420 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~ 420 (490)
.-+.++-.|+..-+..+++..-+..... -+ +..|..|++.++...+.+.|....+++.... +..-+..+..
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 1112222333333333444333333331 11 2567888888889999999999888876443 5566777888
Q ss_pred HHHhcCCHHHHHHHHHHHHh---hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC
Q 042265 421 GCRIHGNVEIAEAAAEHVMK---LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKK 479 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 479 (490)
.+.+.+....+..+++++.+ ..|.-..++..+.......|+.+.-.++.+-+...|+.-
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88899999999999999887 333334456666667778888888888888887777665
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=4.3e-11 Score=105.11 Aligned_cols=283 Identities=16% Similarity=0.083 Sum_probs=133.8
Q ss_pred cCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CeehHHHHHHHHHhcCChhHHHHHH
Q 042265 159 FHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR----DAVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
.|++.+|++...+-.+. ....|..-..+-.+.||.+.+-.++.+..++ +...+-+..+.....|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45666666655554332 1223333334444555555555555554333 2223334444455555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeeh
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFT 311 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 311 (490)
+++.+.+ +-..........+|.+.|++.....+...+.+.+.-.+...-.. ...+
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------------e~~a 231 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------------EQQA 231 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------------HHHH
Confidence 5555443 12333444555555555555555555555555543333221000 0123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
|+.+++-....+..+.-...|+..-.+ .+-++..-..++.-+...|+.++|.++..+..+. +..|+. ..++ ...
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l 305 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRL 305 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhc
Confidence 333333333333333333344443222 2223344444555555566666666665555554 444431 1111 122
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 392 RAGLIEEALEMIKKM-PMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+-++.+.-++..++. ...| ++..+.+|...|.+++.+.+|...|+.+++..|... .|..++.++.+.|+..+|..+.
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHH
Confidence 334444333333331 1222 445566666666666666666666666666666433 6666666666666666666666
Q ss_pred HHHh
Q 042265 470 RSLD 473 (490)
Q Consensus 470 ~~m~ 473 (490)
++..
T Consensus 385 ~e~L 388 (400)
T COG3071 385 REAL 388 (400)
T ss_pred HHHH
Confidence 6554
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.7e-11 Score=103.23 Aligned_cols=281 Identities=16% Similarity=0.138 Sum_probs=175.4
Q ss_pred HcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCChH
Q 042265 87 TLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLG-FICD--VFVLNSLMHVYCVFHRLR 163 (490)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~ 163 (490)
.-.+++++|+++|-+|.+.. +-+..+..+|.+.+-+.|..+.|+++.+.+.++. .+.+ ......|.+-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34568999999999999853 3344566788899999999999999999988742 1111 223455667788888888
Q ss_pred HHHHHHHhcccCC---chhHHHHHHHHHhcCCHHHHHHHHhhCCCCCe--------ehHHHHHHHHHhcCChhHHHHHHH
Q 042265 164 DAQELFDEILYRD---VVSCNTLIDGYVKAGDLAHARQLFDRMPFRDA--------VSWGTLVAGYAQSDQCEEAIQLFC 232 (490)
Q Consensus 164 ~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~ 232 (490)
.|+++|..+.+.+ ......|+..|....+|++|+++-+++.+-+. ..|.-+...+....+.+.|..++.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 8888888886632 34556677777777777777777665443322 234445555556667777777777
Q ss_pred HHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CCe
Q 042265 233 NMMDLDIKPDNI-ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--KNL 309 (490)
Q Consensus 233 ~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~ 309 (490)
+..+.+ |+.+ .-..+.+.....|++++|.+.++.+.+.+...-..+...|..+|...|+.++...++.++.+ +++
T Consensus 205 kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 205 KALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 766643 2222 22334455666777777777777777666555566666677777777777777766666554 233
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc---cCcHHHHHHHHHHhHH
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH---AGLVDEARKLFDEMES 372 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 372 (490)
..-..+........-.+.|...+.+-... +|+...+..++..-.. .|...+....++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44444444444444444555544443332 5666666666665332 2334444555555544
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=2.1e-10 Score=100.93 Aligned_cols=272 Identities=11% Similarity=0.022 Sum_probs=177.5
Q ss_pred CChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHH
Q 042265 59 DPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHS 135 (490)
Q Consensus 59 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 135 (490)
|++..|+++..+-. +.....|..-.++--+.|+.+.+-..+.+..+..-.++...+.+..+.....|+.+.|..-++
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 99999999987644 233445656666777888999999999988875324444556666677788899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCC-----------chhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 042265 136 QVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRD-----------VVSCNTLIDGYVKAGDLAHARQLFDRMP 204 (490)
Q Consensus 136 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (490)
++.+.+ +-++.+.....++|.+.|++.....++.++.+.. ..+|+.+++-....++.+.-...++..+
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 988876 6778888888899999999999999988885542 2356666666666666666666666665
Q ss_pred CC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhH
Q 042265 205 FR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLS 281 (490)
Q Consensus 205 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 281 (490)
.. ++..-..++.-+.+.|+.++|.++..+..+.+..|+.. ..-.+.+.++...-.+..+...+.- +.++..+
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~ 331 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLL 331 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHH
Confidence 32 56666677777777777777777777777766555411 1223345556555555555544442 3344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC--CCeehHHHHHHHHHHcCChHHHHHHHHHHH
Q 042265 282 TGLVDFYAKCGYINTAIEIFESSQE--KNLFTWNAMLVGLAMHGLGRLSLVYFSRMI 336 (490)
Q Consensus 282 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 336 (490)
.+|...|.+.+.|.+|...|+...+ ++..+|+.+..++.+.|++.+|.++.++..
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5566656555555555555554332 344445555555555555555555444433
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.5e-11 Score=104.77 Aligned_cols=228 Identities=12% Similarity=0.082 Sum_probs=140.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042265 212 GTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC 291 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (490)
+.+.++|.+.|.+.+|.+.++..++. .|-..||..|-++|.+..++..|..++.+-.+.- |.++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 55677777777777777777776664 4556677777777777777777777777766553 44444445556666666
Q ss_pred CCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 042265 292 GYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFD 368 (490)
Q Consensus 292 ~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (490)
++.++|.++|+...+. ++....++...|.-.++++.|+..|+++.+.|+. ++..|..+.-+|...++++.+...|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 6666666666655432 3344444445555566666666666666666544 44555555555555666666655555
Q ss_pred HhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 042265 369 EMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 448 (490)
+.... -..|+. -..+|..+.......|++..|.+.|+-++..+|++..+
T Consensus 383 RAlst-at~~~~------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPGQ------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcch------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 55542 111211 33455555555666666666666666666666666666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 449 YKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
++.|+..-.+.|++++|..+++...+
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 77666666667777777666665544
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=7.2e-11 Score=113.33 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=65.9
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCC
Q 042265 97 VLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRD 176 (490)
Q Consensus 97 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 176 (490)
.++..+...|+.|+..||.++|.-|+..|+.+.|- +|.-|.....+.+...++.++....+.++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35556667777777777777777777777777777 7777777666777777777777777777766554 566
Q ss_pred chhHHHHHHHHHhcCCHHH
Q 042265 177 VVSCNTLIDGYVKAGDLAH 195 (490)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~ 195 (490)
..+|..|..+|...||+..
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 6777777777777777654
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=9.4e-10 Score=99.08 Aligned_cols=380 Identities=13% Similarity=-0.029 Sum_probs=245.9
Q ss_pred CCCChhHHHHhhccCC--CCC-cccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCCcHHHHH
Q 042265 57 TTDPLSYALSIFNNIP--YPS-TFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY-SFPFLLRACSQLCSHSLAQT 132 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~ 132 (490)
+.|++++|++.+++.. .|+ +.-|.....+|...|+|+++++--.+..+. .|+-. .+..=.+++-..|+++++..
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHH
Confidence 7999999999999875 466 778888999999999999999887777764 45432 33333445556666666543
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---C-----------------------chhHHHHHHH
Q 042265 133 IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---D-----------------------VVSCNTLIDG 186 (490)
Q Consensus 133 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-----------------------~~~~~~l~~~ 186 (490)
=.....-.|--.|..+--.+=+.+-+.+ ..++.+-+.+=..| + ..+...+..+
T Consensus 205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 205 DVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred hhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 2222211111111111111111111111 11122222210001 1 0111111111
Q ss_pred HH--hcC---CHHHHHHHHhhCC-----CC-----C------eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 042265 187 YV--KAG---DLAHARQLFDRMP-----FR-----D------AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIA 245 (490)
Q Consensus 187 ~~--~~~---~~~~a~~~~~~~~-----~~-----~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 245 (490)
+. ..+ .+..|.+.+.+-. .+ | ..+.......+.-.|+...|..-|+..++....++. .
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-l 362 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-L 362 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-H
Confidence 11 011 2333333332211 01 1 112222223345578999999999999987544333 3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHc
Q 042265 246 LVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMH 322 (490)
Q Consensus 246 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 322 (490)
|.-+...|....+.++..+.|....+.+ +.++.+|.--.+++.-.++++.|..-|++...- +...|-.+..+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 7778888999999999999999999987 778888988889999999999999999988764 444555566666688
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh----CCCCCc--hHHHHHHhhhhhcCCH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVY----GVSKEL--KHYGCMADLLGRAGLI 396 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~--~~~~~l~~~~~~~g~~ 396 (490)
+++++++..|++.+++ ++..+..|+...+.+..++++++|.+.|+.....- ++..++ .+-..++..- =.+++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhH
Confidence 9999999999999886 45567889999999999999999999999988631 111122 2222222222 33899
Q ss_pred HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 397 EEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 397 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
..|..++++.. ..| ....+..|...-.+.|+.++|+++|++...+-.
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999998865 344 677899999999999999999999999887443
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=4.3e-11 Score=112.56 Aligned_cols=163 Identities=21% Similarity=0.167 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhC--CCCC--
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIE-----ARI-KPDG-VTILGALVGCSHAGLVDEARKLFDEMESVYG--VSKE-- 379 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~-- 379 (490)
+++.|..+|.+.|++++|...+++..+ .|. .|.. ..++.+...|...+++++|..+++...+.+. ..++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 444455555555555555555544322 121 1222 2355566678888999999988888766533 2222
Q ss_pred --chHHHHHHhhhhhcCCHHHHHHHHhhCCC-------C--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCC
Q 042265 380 --LKHYGCMADLLGRAGLIEEALEMIKKMPM-------G--G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK----LKP 443 (490)
Q Consensus 380 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p 443 (490)
..+++.|...|...|++++|.++++++.. + + ....++.+...|.+.+++.+|.++|.+... ..|
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 35788899999999999999999987541 1 1 355778888889999999999999998876 455
Q ss_pred CCC---chHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 444 EDG---GVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 444 ~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+++ .+|..|+.+|.+.|++++|.++.+.+.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 554 467899999999999999999988775
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=4.6e-11 Score=104.87 Aligned_cols=197 Identities=12% Similarity=0.012 Sum_probs=145.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC 354 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 354 (490)
...+..+...+...|++++|.+.+++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344555666666666666666666654432 34456666777777788888888887777653 23455666677777
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHH
Q 042265 355 SHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAE 432 (490)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~ 432 (490)
...|++++|.+.++++.+....+.....+..+...+...|++++|...+++... .| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888876412223445666778888888999999988887542 23 5677888888899999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 433 AAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988888888888889999999999999998877543
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=6.4e-09 Score=96.89 Aligned_cols=451 Identities=14% Similarity=0.133 Sum_probs=230.0
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHH
Q 042265 3 LNNFIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTI 82 (490)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 82 (490)
|..++...+.....+..+......=.+. -+..+|...+.... ..|-++.+.+++++-.+-++..-+-.
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvt--qH~rIW~lyl~Fv~----------~~~lPets~rvyrRYLk~~P~~~eey 175 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVT--QHDRIWDLYLKFVE----------SHGLPETSIRVYRRYLKVAPEAREEY 175 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchH--hhccchHHHHHHHH----------hCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 5556666666666666666665543222 56667777777777 77777788888877655455556677
Q ss_pred HHHHHcCCCchhHHHHHHHhhhCC------CCCCcccHHHHHHHHhccCCcHH---HHHHHHHHHHhCCCCc--hhHHHH
Q 042265 83 IRAHTLFSSPLNAVVLFSQMRTVS------IPPDFYSFPFLLRACSQLCSHSL---AQTIHSQVLKLGFICD--VFVLNS 151 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~g~~~~--~~~~~~ 151 (490)
|..+++.+++++|-+.+....... .+.+...|.-+-...++..+.-. ...+++.+... -+| ...|+.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 788888888888888777765331 12333345555544444332221 22233333222 233 345778
Q ss_pred HHHHHHhcCChHHHHHHHHhcccC--CchhHHHHHHHHHhc----------------C------CHHHHHHHHhhCCCC-
Q 042265 152 LMHVYCVFHRLRDAQELFDEILYR--DVVSCNTLIDGYVKA----------------G------DLAHARQLFDRMPFR- 206 (490)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~- 206 (490)
|.+-|.+.|.+++|..++++.... .+..|+.+.++|+.- + +++-...-|+.+...
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 888888888888888888776443 333333333333210 1 122222223332211
Q ss_pred --------------CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccCChHHHHHHH
Q 042265 207 --------------DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD------NIALVSALSACARLGELEQGKNIH 266 (490)
Q Consensus 207 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~ 266 (490)
++..|..-+ -...|+..+-...|.++++. +.|. ...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 112222211 12345556666666666543 1221 124555666666677777777777
Q ss_pred HHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhccCC-C--------------------CeehHHHHHHHHHHc
Q 042265 267 RYIELNQIRVD---SFLSTGLVDFYAKCGYINTAIEIFESSQE-K--------------------NLFTWNAMLVGLAMH 322 (490)
Q Consensus 267 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~ 322 (490)
++..+...+.- ..+|..-..+-.+..+++.|+++.+.... | +...|...+...-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 76666543322 34555555666666666666666655431 0 112344444443444
Q ss_pred CChHHHHHHHHHHHHCCC----------------------------------CCCH-HHHHHHHHHhh---ccCcHHHHH
Q 042265 323 GLGRLSLVYFSRMIEARI----------------------------------KPDG-VTILGALVGCS---HAGLVDEAR 364 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~----------------------------------~p~~-~~~~~l~~~~~---~~g~~~~a~ 364 (490)
|-++....+|+++.+..+ .|+. ..|+..+.-+. ....++.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 444444444444443222 1222 12232222222 123567777
Q ss_pred HHHHHhHHhhCCCCCchH--HHHHHhhhhhcCCHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 365 KLFDEMESVYGVSKELKH--YGCMADLLGRAGLIEEALEMIKKMPMGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
.+|++..+ +.+|...- |-.....=.+.|-...|+.++++....- -...|+..|.-....=-...-..+|+++
T Consensus 571 dLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 571 DLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 77777776 55554321 1112222224466666777776654322 2234444444333322233445566666
Q ss_pred HhhCCCCCc--hHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 439 MKLKPEDGG--VYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 439 ~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
++.-|++.. .....+..-.+.|..+.|..++.--
T Consensus 649 Ie~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 649 IESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 665554331 2223344455666666666666533
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=1.3e-10 Score=114.53 Aligned_cols=259 Identities=11% Similarity=-0.012 Sum_probs=186.3
Q ss_pred CeehHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH---------ccCChHHHHHHHHHHHH
Q 042265 207 DAVSWGTLVAGYAQ-----SDQCEEAIQLFCNMMDLDIKPD-NIALVSALSACA---------RLGELEQGKNIHRYIEL 271 (490)
Q Consensus 207 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 271 (490)
+...|...+++... .+++++|...|++.++. .|+ ...+..+..++. ..++.++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556566655322 23467899999999875 454 445555555443 23457899999999998
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 042265 272 NQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--K-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTIL 348 (490)
Q Consensus 272 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 348 (490)
.. +.+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+....+ ...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHH
Confidence 86 67788888999999999999999999998775 3 45578888899999999999999999998864332 22233
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcC
Q 042265 349 GALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLGGCRIHG 426 (490)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~ 426 (490)
.++..+...|++++|...++++... ..+.++..+..+..++...|++++|...++++... | +....+.+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 3444566689999999999998873 22334555777888899999999999999986543 3 4445555666677777
Q ss_pred CHHHHHHHHHHHHh---hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 427 NVEIAEAAAEHVMK---LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 427 ~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+.|...++++.+ ..|.++ ..+...|.-.|+-+.+..+ +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 478888888777 444444 2255566667777777666 7777654
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.2e-09 Score=96.16 Aligned_cols=410 Identities=10% Similarity=0.016 Sum_probs=280.9
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhcc--CCCCCcccHHHHHHHHHcCCCchhHHHHHH----HhhhC-
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNN--IPYPSTFSYNTIIRAHTLFSSPLNAVVLFS----QMRTV- 105 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~- 105 (490)
.+|.-.--+.++|. -.|+.+.|..+... +...|..+.......+.+..+++.|..++. .+...
T Consensus 47 ~dp~d~~~~aq~l~----------~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~ 116 (611)
T KOG1173|consen 47 NDPADIYWLAQVLY----------LGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFS 116 (611)
T ss_pred CChHHHHHHHHHHH----------hhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchh
Confidence 44444444566666 56888888887764 457888888889999999999999999988 22111
Q ss_pred --------CCCCCccc----HHHHHHH-------HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-------
Q 042265 106 --------SIPPDFYS----FPFLLRA-------CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVF------- 159 (490)
Q Consensus 106 --------~~~p~~~~----~~~ll~~-------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~------- 159 (490)
-+.+|..- -+.-... +....++++|...|.+.+...+ .+.+.+..++....-.
T Consensus 117 yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~c~Ea~~~lvs~~mlt~~Ee~~l 195 (611)
T KOG1173|consen 117 YYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-KCFEAFEKLVSAHMLTAQEEFEL 195 (611)
T ss_pred hcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-hhHHHHHHHHHHHhcchhHHHHH
Confidence 01111111 1111122 2233466777777776655431 1222222222221111
Q ss_pred ----------C-ChHHHHHHHHhc--------------------ccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--
Q 042265 160 ----------H-RLRDAQELFDEI--------------------LYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR-- 206 (490)
Q Consensus 160 ----------g-~~~~A~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 206 (490)
+ +.+.-..+|+-. .+.++.....-..-+...+++.+..++++.+.+.
T Consensus 196 l~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp 275 (611)
T KOG1173|consen 196 LESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP 275 (611)
T ss_pred HhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC
Confidence 1 111112222211 0012233334445567789999999999887655
Q ss_pred -CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042265 207 -DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLV 285 (490)
Q Consensus 207 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (490)
....+-.-|.++...|+..+-..+=.++++.- +-...+|-.+.--|...|+.++|.++|.+..... +.-...|..+.
T Consensus 276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fg 353 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFG 353 (611)
T ss_pred CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHh
Confidence 45566677778999999988888888888763 4466789999888888999999999999988765 44466788999
Q ss_pred HHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 042265 286 DFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDE 362 (490)
Q Consensus 286 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 362 (490)
..|.-.|.-++|+..+....+ ..-..+--+.--|.+.++...|.++|.+.... .+.|+..++-+.-.....+.+.+
T Consensus 354 hsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 354 HSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred HHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHH
Confidence 999999999999988876543 12222333445577899999999999988764 23356667776666667899999
Q ss_pred HHHHHHHhHHhh-CC---C-CCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042265 363 ARKLFDEMESVY-GV---S-KELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAA 435 (490)
Q Consensus 363 a~~~~~~~~~~~-~~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 435 (490)
|..+|+.....- .. . --..+++.|..+|.+.+++++|+..+++.. ..| +..++.+++-.|...|+++.|++.|
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 999999887320 01 1 133467889999999999999999999854 334 9999999999999999999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHH
Q 042265 436 EHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 436 ~~~~~~~p~~~~~~~~l~~~~ 456 (490)
.+++-+.|++..+-..|..+.
T Consensus 513 hKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 513 HKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHhcCCccHHHHHHHHHHH
Confidence 999999999975555555444
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1e-08 Score=94.74 Aligned_cols=401 Identities=13% Similarity=0.051 Sum_probs=234.1
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
+.|++++|.+....+. +.+...+.+=+-++.+.++|++|+.+.+.-... ..+...+.-=..+..+.+..++|...
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHH
Confidence 7899999999988764 456667777788899999999999665543211 11111111123344577899999988
Q ss_pred HHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHH-HHhcCCHHHHHHHHhhCCCCCeehH
Q 042265 134 HSQVLKLGFIC-DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDG-YVKAGDLAHARQLFDRMPFRDAVSW 211 (490)
Q Consensus 134 ~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (490)
++ |..+ +..+...-...+.+.|++++|..+|+.+.+.+...+...+.+ +...+---.+. +.+........+|
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSY 175 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchH
Confidence 87 3333 344666777888999999999999999976655544443332 11111111111 2333332222233
Q ss_pred H---HHHHHHHhcCChhHHHHHHHHHHhC--------CCC-----CCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 042265 212 G---TLVAGYAQSDQCEEAIQLFCNMMDL--------DIK-----PDNI-ALVSALSACARLGELEQGKNIHRYIELNQI 274 (490)
Q Consensus 212 ~---~l~~~~~~~g~~~~A~~~~~~m~~~--------~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 274 (490)
. .....+...|++.+|+++++...+. ... -+.. .-..+.-++...|+.++|..++....+..
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~- 254 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN- 254 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-
Confidence 3 3344556667777777777766221 000 0001 11223344556677777777777766654
Q ss_pred CCChhhH----HHHHHH---------------------------------------------HHhcCCHHHHHHHHhccC
Q 042265 275 RVDSFLS----TGLVDF---------------------------------------------YAKCGYINTAIEIFESSQ 305 (490)
Q Consensus 275 ~~~~~~~----~~l~~~---------------------------------------------~~~~~~~~~A~~~~~~~~ 305 (490)
++|.... |.|+.+ ..-.+..+.+.++.....
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 3332111 111110 001122233333333333
Q ss_pred CCC-eehHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH--------HhHHhh
Q 042265 306 EKN-LFTWNAMLVGLA--MHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFD--------EMESVY 374 (490)
Q Consensus 306 ~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~ 374 (490)
... ...+..++..+. +...+..+.+++...-+....-........++.....|+++.|.+++. .+.+.
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~- 413 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA- 413 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-
Confidence 222 233444444332 223466777777766654332234455556667788999999999999 44432
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKM--------PMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
+.. +.+...+...+.+.++.+.|..++.+. ...+ -..++..++..-.+.|+-++|..+++++.+.+|++
T Consensus 414 ~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 414 KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 333 445566778888887766666665543 2222 22344444555567899999999999999999999
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHH
Q 042265 446 GGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
..+...++.+|++. +.+.|..+-+
T Consensus 492 ~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 492 TDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 99999999998776 4566655543
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=4.1e-09 Score=100.27 Aligned_cols=417 Identities=13% Similarity=0.020 Sum_probs=259.0
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY---PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPP 109 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 109 (490)
-++.+|..|.-... +.|+++.+-+.|++..+ .....|+.+-..+...|....|+.+++.-....-.|
T Consensus 321 nd~ai~d~Lt~al~----------~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 321 NDAAIFDHLTFALS----------RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred chHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 68889999988888 89999999999987653 455678888888999999999999988765543224
Q ss_pred Ccc-cHHHHHHHHh-ccCCcHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc-----------CChHHHHHHHHhc
Q 042265 110 DFY-SFPFLLRACS-QLCSHSLAQTIHSQVLKL--GF--ICDVFVLNSLMHVYCVF-----------HRLRDAQELFDEI 172 (490)
Q Consensus 110 ~~~-~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~ 172 (490)
+.. .+-..-..|. +.+..+++..+-.+.... +. ......|..+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 333 3333333443 336667777666666552 11 12233344444344321 1134566667766
Q ss_pred ccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 042265 173 LYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMP----FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIA 245 (490)
Q Consensus 173 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 245 (490)
.+. |+.+.-.+.--|+..++++.|.+...+.. ..+...|..+...+...+++.+|+.+.+...+.- .-|...
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l 549 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVL 549 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhh
Confidence 443 33333333444666777777777666533 3366777777777777777877777777665531 112222
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHhccC---C-C--CeehHHHHHHH
Q 042265 246 LVSALSACARLGELEQGKNIHRYIELNQI-RVDSFLSTGLVDFYAKCGYINTAIEIFESSQ---E-K--NLFTWNAMLVG 318 (490)
Q Consensus 246 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~--~~~~~~~l~~~ 318 (490)
...-+..-...++.+++......+...-- .+.. ...++-....+....+. . + .+.++..+...
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 22222333345666666666655543210 0000 01111122222222221 1 1 12223222222
Q ss_pred HHHcCChHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIK--PD------GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~--p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
.... ...+..-.. +....+. |+ ...|......+.+.++.++|...+.+..+ ..+.....|......+
T Consensus 620 ~a~~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 620 VASQ--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLL 694 (799)
T ss_pred HHhh--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHH
Confidence 1111 111100000 1111112 22 12344556667888999999999999887 5667777888888889
Q ss_pred hhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 391 GRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEA--AAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
...|+.++|.+.|.... ..| ++.+..++...+.+.|+...|.. ++..+++.+|.++.+|..++..+.+.|+.++|.
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 99999999999987744 444 88899999999999999888888 999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 042265 467 KIRRSLDAG 475 (490)
Q Consensus 467 ~~~~~m~~~ 475 (490)
+.|+...+.
T Consensus 775 ecf~aa~qL 783 (799)
T KOG4162|consen 775 ECFQAALQL 783 (799)
T ss_pred HHHHHHHhh
Confidence 999987654
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=6.5e-11 Score=96.36 Aligned_cols=163 Identities=13% Similarity=0.018 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
...|.-+|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++..+ -.+.+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 3345566777788888887777777753 22445667777777778888888888888776 45556677777777788
Q ss_pred hcCCHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHH
Q 042265 392 RAGLIEEALEMIKKMPMGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVK 467 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (490)
..|++++|...|++....| ...+|..++.+..+.|+++.|...|++.++.+|+.+.+...++......|++-+|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888887776665 566777777777788888888888888888888888788888888888888888888
Q ss_pred HHHHHhcCCC
Q 042265 468 IRRSLDAGKI 477 (490)
Q Consensus 468 ~~~~m~~~~~ 477 (490)
.+++....+.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 8877766654
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.6e-08 Score=89.50 Aligned_cols=271 Identities=11% Similarity=0.033 Sum_probs=182.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeh---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042265 176 DVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVS---WGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSA 252 (490)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 252 (490)
|+.....+.+.+...|+.++|+..|++...-|+.+ .....-.+.+.|+.+....+...+.... +-+...|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 55666677777777777777777777655433322 2223334456677777777766665432 2233334444444
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC--CC-CeehHHHHHHHHHHcCChHHHH
Q 042265 253 CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ--EK-NLFTWNAMLVGLAMHGLGRLSL 329 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~ 329 (490)
....+++..|..+-++.++.. +.+...+..-..++...++.++|.-.|+... .| +...|.-|+..|...|+..+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 456677777777777766654 4445555555566777778888777777644 33 6677888888888888888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHhh-ccCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHhhhhhcCCHHHHHHHHhh-
Q 042265 330 VYFSRMIEARIKPDGVTILGAL-VGCS-HAGLVDEARKLFDEMESVYGVSKE-LKHYGCMADLLGRAGLIEEALEMIKK- 405 (490)
Q Consensus 330 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~- 405 (490)
-+-+..... ...+..+...+. ..|. ...--++|..++++..+ ..|+ ....+.+...+...|+.++++.++++
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 766655443 233555555552 2232 23345788888888775 2343 45667788889999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 042265 406 MPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVL 452 (490)
Q Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 452 (490)
+...+|...-+.|...+...+.+++|.+.|..+++++|++..+...+
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 45667888999999999999999999999999999999987555444
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=4.5e-10 Score=98.55 Aligned_cols=199 Identities=20% Similarity=0.168 Sum_probs=105.2
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456666666777777777777777666543 2234455566666666666666666666666553 3334444445555
Q ss_pred HHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
+...|++++|...+++ .......| ....+..+...+...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQ-------------------------------AIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHHHH-------------------------------HHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555544 43321111 122333344445555555555555
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
+++..+ ..+.+...+..+...+...|++++|...+++... ..+...+..++..+...|+.+.|..+.+.+.+.
T Consensus 158 ~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 555554 2223344455555555555555555555554321 114444444555555566666666665555443
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.2e-08 Score=88.33 Aligned_cols=348 Identities=14% Similarity=0.080 Sum_probs=166.9
Q ss_pred HHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 042265 85 AHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRD 164 (490)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 164 (490)
.+.+.|++++|...|+.+.+.. .|+...+..|.-+..-.|.+.+|..+-... +.++-.-..+...-.+.|+-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHH
Confidence 3445555555555555544432 334444444444444445555554443321 2222222333334444454444
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--eehHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042265 165 AQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRD--AVSWGT-LVAGYAQSDQCEEAIQLFCNMMDLDIKP 241 (490)
Q Consensus 165 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~~~p 241 (490)
-..+-+.+... ...--++.......-.+.+|++++.++...+ -...|. +.-+|.+..-++-+.++++-..+. -|
T Consensus 140 ~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~p 216 (557)
T KOG3785|consen 140 ILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FP 216 (557)
T ss_pred HHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CC
Confidence 44443333221 1222334444444557888999998876543 233333 445677777788888877776664 24
Q ss_pred CH-HHHHHHHHHHHcc--CChHHH--HH----------HHHHHHHcCC------------CC-----ChhhHHHHHHHHH
Q 042265 242 DN-IALVSALSACARL--GELEQG--KN----------IHRYIELNQI------------RV-----DSFLSTGLVDFYA 289 (490)
Q Consensus 242 ~~-~~~~~l~~~~~~~--~~~~~a--~~----------~~~~~~~~~~------------~~-----~~~~~~~l~~~~~ 289 (490)
|+ ...+..+....+. |+..+. .. ..+.+.+.++ -| -+.....|+-.|.
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL 296 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYL 296 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeec
Confidence 43 3333333222222 221111 01 1111111110 00 1223334555678
Q ss_pred hcCCHHHHHHHHhccCCCCeehHHHHHHHHHHc-------------------------------------------CChH
Q 042265 290 KCGYINTAIEIFESSQEKNLFTWNAMLVGLAMH-------------------------------------------GLGR 326 (490)
Q Consensus 290 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------------------------~~~~ 326 (490)
+.+++.+|..+.+++....+.-|-.-.-.+... .+++
T Consensus 297 ~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFd 376 (557)
T KOG3785|consen 297 NQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFD 376 (557)
T ss_pred ccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 888999999888877654443332222222222 2333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHH-HHHHhhhhhcCCHHHHHHHHhh
Q 042265 327 LSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHY-GCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
+.+..++.....-...|.. --.+.++.+..|++.+|+++|-.+... .++ |..+| ..|.++|.+.++++-|+.++-+
T Consensus 377 dVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 377 DVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 3333333333221111111 122445556666677777766665542 222 33333 4456666677777777776666
Q ss_pred CCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 406 MPMGGDVFVWSGL-LGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 406 ~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
+....+..++..+ ...|.+.+++--|-+.|+.+...+|.
T Consensus 454 ~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 454 TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 5544433333333 33466666666666666666666664
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=1.8e-12 Score=82.16 Aligned_cols=50 Identities=28% Similarity=0.497 Sum_probs=42.2
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 042265 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ 123 (490)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 123 (490)
||+.+||.+|+++++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 69
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=6.6e-09 Score=87.91 Aligned_cols=388 Identities=15% Similarity=0.048 Sum_probs=255.0
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHH-HHHHHH
Q 042265 78 SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLN-SLMHVY 156 (490)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~ 156 (490)
-+++.+..+.+..+++.|++++..-.+.. +.+....+.|..+|-...++..|-..++++... .|...-|. --...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 36677777888999999999998887763 236677888888999999999999999998774 45555443 335667
Q ss_pred HhcCChHHHHHHHHhcccC-CchhHHHHHH--HHHhcCCHHHHHHHHhhCC-CCCeehHHHHHHHHHhcCChhHHHHHHH
Q 042265 157 CVFHRLRDAQELFDEILYR-DVVSCNTLID--GYVKAGDLAHARQLFDRMP-FRDAVSWGTLVAGYAQSDQCEEAIQLFC 232 (490)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 232 (490)
.+.+.+..|+.+...|... +...-..-+. .....+|+..+..++++.. +.+..+.+.......+.|+++.|.+-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 7889999999999998764 2222222222 2345789999999999998 4677888888888899999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChh---------------------hHHHHHH-----
Q 042265 233 NMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSF---------------------LSTGLVD----- 286 (490)
Q Consensus 233 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~l~~----- 286 (490)
...+-+---....|+..+. ..+.++.+.|.++..++++.|++..+. .-+.+++
T Consensus 169 aAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 9887543334456766554 457789999999999998887643211 1223333
Q ss_pred --HHHhcCCHHHHHHHHhccCCC-----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 042265 287 --FYAKCGYINTAIEIFESSQEK-----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL 359 (490)
Q Consensus 287 --~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 359 (490)
.+.+.|+++.|.+.+-.|+.+ |++|...+.-.= ..+++-+..+-+.-+.+...- ...||..++-.||+..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHH
Confidence 356789999999999999853 667665553322 234455555555556655443 45789999999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCC---HHHHHHH
Q 042265 360 VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGG--CRIHGN---VEIAEAA 434 (490)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~~~---~~~a~~~ 434 (490)
++.|-.++.+-....-.-.+...|+.|=......-..++|.+-++.+...-....-...+.. -...++ ...+++-
T Consensus 326 f~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~ 405 (459)
T KOG4340|consen 326 FDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNE 405 (459)
T ss_pred HhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99988887664432011123344443322223344566666655543311000011111111 111111 2234444
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 435 AEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+++.+++..+ +....++.|.+..++..+.++|+.-.+
T Consensus 406 Yd~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 406 YDETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 5555553322 667778889999999999999986544
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=3.6e-10 Score=111.55 Aligned_cols=213 Identities=12% Similarity=-0.034 Sum_probs=165.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---------cCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCC
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK---------CGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGL 324 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 324 (490)
++.++|...+++..+.. |.+...+..+..+|.. .+++++|...+++..+- +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999999875 4556667666665542 24488999999987753 55678888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHh
Q 042265 325 GRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIK 404 (490)
Q Consensus 325 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (490)
+++|...+++..+.+ +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999864 224567788888899999999999999999873 22233333444555667899999999998
Q ss_pred hCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 405 KMPMG--G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 405 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+.... | ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 86532 3 56667778888999999999999999988888888877888888888888 4888877776653
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.30 E-value=4.3e-08 Score=91.70 Aligned_cols=382 Identities=13% Similarity=0.056 Sum_probs=216.5
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
..|+-++|......-. ..+.++|..+.-.+....++++|++.|......+ +-|...+.-+--.-++.|+++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3788888888877543 4577889888888888889999999999988754 33444566555555677888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc-----CCchhHHHHH------HHHHhcCCHHHHHHHHhh
Q 042265 134 HSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY-----RDVVSCNTLI------DGYVKAGDLAHARQLFDR 202 (490)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~------~~~~~~~~~~~a~~~~~~ 202 (490)
...+.+.. +-....|..+..++.-.|+...|..+++...+ ++...+.... ....+.|.++.|.+.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 88877763 45566777888888888999888888877632 3333333222 234456666666666655
Q ss_pred CCCC--Cee-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHccCChHHH-HHHHHHHHHcCCCCC
Q 042265 203 MPFR--DAV-SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALS-ACARLGELEQG-KNIHRYIELNQIRVD 277 (490)
Q Consensus 203 ~~~~--~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a-~~~~~~~~~~~~~~~ 277 (490)
-... |-. .-..-...+.+.++.++|..+|..++.. .||...|...+. ++....+.-++ ..+|....+. .|.
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r 286 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPR 286 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccc
Confidence 4432 211 2223344566666677777776666664 355554443333 22212121122 2333333222 111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 357 (490)
......+- +.......-.+..-.++..+.+.|+++--..+.++-. .-
T Consensus 287 ~e~p~Rlp------------------------------lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p 333 (700)
T KOG1156|consen 287 HECPRRLP------------------------------LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DP 333 (700)
T ss_pred cccchhcc------------------------------HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---ch
Confidence 11000000 0000001112233345556666665543333322221 11
Q ss_pred CcHHHHHHHHHHhHHhh-C------------CCCCch--HHHHHHhhhhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHH
Q 042265 358 GLVDEARKLFDEMESVY-G------------VSKELK--HYGCMADLLGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLG 420 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~-~------------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~ 420 (490)
...+-.+++.-.+.... + -+|... ++-.++..+-+.|+++.|..+++....+ | -+..|..-.+
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaR 413 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKAR 413 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 11111111111111100 1 134443 3345677778888888888888876644 3 2334444446
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
.+...|+.++|..+++++.+++-.|..+-..-+.-..++++.++|.++....-+.|.
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 677888888888888888887777764444666677788888888888877766553
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=3.6e-07 Score=85.55 Aligned_cols=388 Identities=13% Similarity=0.089 Sum_probs=234.1
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhC-CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTV-SIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHV 155 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 155 (490)
..|-..+..+.++|+...-...|+..... .+......|...+......+-++.+..+++..++. ++..-...+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 56777777777777777777777766543 33334456777777766777777777777777653 23335566667
Q ss_pred HHhcCChHHHHHHHHhcccC----------C--------------------------------------chhHHHHHHHH
Q 042265 156 YCVFHRLRDAQELFDEILYR----------D--------------------------------------VVSCNTLIDGY 187 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~----------~--------------------------------------~~~~~~l~~~~ 187 (490)
+++.+++++|.+.+..++.. + ...|++|.+.|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 77777777777776666221 1 12466666667
Q ss_pred HhcCCHHHHHHHHhhCCCC--CeehHHHHHHHHHhc----------------C------ChhHHHHHHHHHHhCCC----
Q 042265 188 VKAGDLAHARQLFDRMPFR--DAVSWGTLVAGYAQS----------------D------QCEEAIQLFCNMMDLDI---- 239 (490)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~----------------g------~~~~A~~~~~~m~~~~~---- 239 (490)
.+.|++++|.++|++.... ++.-|..+-.+|+.- | +++-.+..|+.+.+.+.
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 7777777777777664432 222222222222211 1 11122223333322210
Q ss_pred -------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 042265 240 -------KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRV------DSFLSTGLVDFYAKCGYINTAIEIFESSQE 306 (490)
Q Consensus 240 -------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 306 (490)
+-+...|..-.. ...|+..+-...+.++.+.- .| -...|..+...|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 011112211111 12345555666666666541 22 134678889999999999999999999887
Q ss_pred CCee-------hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHhhccCcHHH
Q 042265 307 KNLF-------TWNAMLVGLAMHGLGRLSLVYFSRMIEARIK----------P-------DGVTILGALVGCSHAGLVDE 362 (490)
Q Consensus 307 ~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~----------p-------~~~~~~~l~~~~~~~g~~~~ 362 (490)
-+-. +|..-...-.++.+++.|++++++.....-. | +...|...+..-...|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 5433 4555555556788899999988876542111 1 11234444554555678888
Q ss_pred HHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC---CCC-CHHHHHHHHHHHHh---cCCHHHHHHHH
Q 042265 363 ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP---MGG-DVFVWSGLLGGCRI---HGNVEIAEAAA 435 (490)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~~~l~~~~~~---~~~~~~a~~~~ 435 (490)
...+|+++... .+ .++...-.....+....-++++.+++++-. .-| -..+|+..+.-+.+ ....+.|..+|
T Consensus 496 tk~vYdriidL-ri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 496 TKAVYDRIIDL-RI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHH-hc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 88999998874 32 233333334445667788999999999854 223 44577777766543 34789999999
Q ss_pred HHHHhhCCCCC--chHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 436 EHVMKLKPEDG--GVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 436 ~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+++++.-|+.. ..|...+..-.+-|....|..++++.-
T Consensus 574 EqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 574 EQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999777533 233344445556788999999998853
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=4.1e-09 Score=95.28 Aligned_cols=218 Identities=13% Similarity=0.003 Sum_probs=151.5
Q ss_pred cCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042265 221 SDQCEEAIQLFCNMMDLD-IKPD--NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTA 297 (490)
Q Consensus 221 ~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 297 (490)
.+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...++.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677777777777532 1222 3456777778888899999998888888876 56778888899999999999999
Q ss_pred HHHHhccCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh
Q 042265 298 IEIFESSQE--K-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVY 374 (490)
Q Consensus 298 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (490)
...|++..+ | +..+|..+..++...|++++|.+.+++..+. .|+..........+...++.++|...+++...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999888764 3 4567788888888999999999999998875 34433222222223456789999999977665
Q ss_pred CCCCCchHHHHHHhhhhhcCCHH--HHHHHHhhCCCC-C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 375 GVSKELKHYGCMADLLGRAGLIE--EALEMIKKMPMG-G-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...++...+ .+... ..|+.. ++.+.+.+.... + ....|..++..+.+.|++++|+..|+++++.+|++.
T Consensus 194 ~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 334443322 23332 344443 333333322111 1 446788999999999999999999999999997544
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9e-08 Score=84.82 Aligned_cols=264 Identities=11% Similarity=0.005 Sum_probs=198.5
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042265 206 RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNI-ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGL 284 (490)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (490)
.|+.....+...+...|+.++|+..|++.+.. .|+.. ....-.-.+.+.|+.+....+...+.... ..+...|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 37888999999999999999999999998764 34332 22222333467788888877777766543 2334444444
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 042265 285 VDFYAKCGYINTAIEIFESSQEKNL---FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD 361 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 361 (490)
+......++++.|+.+-++..+.++ ..+-.-...+...+++++|.-.|+..+... +-+..+|..|+.+|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 5556667889999999888776444 444444567889999999999999988752 236789999999999999999
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHH-hhhh-hcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042265 362 EARKLFDEMESVYGVSKELKHYGCMA-DLLG-RAGLIEEALEMIKK-MPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 437 (490)
+|.-.-+...+ .++.+..+...+. ..+. .-..-++|.+++++ +..+| -....+.+...+...|..++++.++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99988887776 4555666655542 3332 22334789999987 45566 456677788889999999999999999
Q ss_pred HHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 438 VMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 438 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+...|+.. ..+.|+..+...+.+.+|.+.|....+.+
T Consensus 464 ~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 464 HLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 999999776 99999999999999999999998776543
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.8e-11 Score=77.55 Aligned_cols=50 Identities=32% Similarity=0.584 Sum_probs=42.8
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 042265 206 RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACAR 255 (490)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 255 (490)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57788888888888888888888888888888888888888888888764
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1e-07 Score=88.30 Aligned_cols=381 Identities=11% Similarity=-0.015 Sum_probs=232.3
Q ss_pred HHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 042265 83 IRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL 162 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 162 (490)
++-+...|++++|.....++...+ +-|...+..=+-+..+.+.++.|..+.+.-.. ...+...+..-..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccH
Confidence 455678899999999999998765 44555677777778889999999855433111 111122222334556689999
Q ss_pred HHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042265 163 RDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242 (490)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 242 (490)
++|+..++.....|..+...-...+.+.|++++|.++|+.+.+.+...+...+++-+-.--...... .+......|
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~---~~q~v~~v~- 171 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ---LLQSVPEVP- 171 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH---HHHhccCCC-
Confidence 9999999966555666777778889999999999999999987766666555544222111111111 122222333
Q ss_pred HHHHHHH---HHHHHccCChHHHHHHHHHHHHcCC-------CCCh-------hhHHHHHHHHHhcCCHHHHHHHHhccC
Q 042265 243 NIALVSA---LSACARLGELEQGKNIHRYIELNQI-------RVDS-------FLSTGLVDFYAKCGYINTAIEIFESSQ 305 (490)
Q Consensus 243 ~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 305 (490)
..+|..+ ...+...|++.+|+++++...+.+. ..+. .+-..+.-++...|+.++|..++....
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 2244433 3445678999999999998833211 1111 122335556778999999999887765
Q ss_pred CC---Ce----ehHHHHHHH-----------------------------HH----------------HcCChHHHHHHHH
Q 042265 306 EK---NL----FTWNAMLVG-----------------------------LA----------------MHGLGRLSLVYFS 333 (490)
Q Consensus 306 ~~---~~----~~~~~l~~~-----------------------------~~----------------~~~~~~~A~~~~~ 333 (490)
+. |. +.-|.++.. +. ..+..+.+.++..
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 42 11 001111100 00 0000111111100
Q ss_pred HHHHCCCCCCHHHHHHHHHHhh--ccCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHhhhhhcCCHHHHHHHHh------
Q 042265 334 RMIEARIKPDGVTILGALVGCS--HAGLVDEARKLFDEMESVYGVSKE-LKHYGCMADLLGRAGLIEEALEMIK------ 404 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~------ 404 (490)
.. .+..|. ..+..++..+. +...+.++..++....+ +.+.+ ..+.-..+......|+++.|.+++.
T Consensus 332 ~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 332 SL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred hC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 00 111222 33444444432 22256778888887776 44444 4456667788889999999999998
Q ss_pred --hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----h---CCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 405 --KMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK----L---KPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 405 --~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.+..-. .+.+...+...+.+.++.+.|..++..++. . .+....++..++..-.+.|+-++|..+++++.+
T Consensus 407 ~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 407 KSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 433222 566777777778888888888888888877 1 122223455556666778999999999999977
Q ss_pred C
Q 042265 475 G 475 (490)
Q Consensus 475 ~ 475 (490)
.
T Consensus 487 ~ 487 (652)
T KOG2376|consen 487 F 487 (652)
T ss_pred h
Confidence 4
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=9e-08 Score=91.62 Aligned_cols=402 Identities=11% Similarity=0.048 Sum_probs=234.0
Q ss_pred CCCChhHHHHhhccCCC--CC-cccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHh-c-----cCCc
Q 042265 57 TTDPLSYALSIFNNIPY--PS-TFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACS-Q-----LCSH 127 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~-----~~~~ 127 (490)
..|++++|++.++.... .| ..........+.+.|+.++|..+|..+.+.+ |+...|...+..+. . ..+.
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccH
Confidence 46888888888876442 23 3445566677788888888888888888764 66665555544443 1 1245
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH-HHHHHHHhcccCCc-hhHHHHHHHHHhcCCHHHHHHHHhhCC-
Q 042265 128 SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR-DAQELFDEILYRDV-VSCNTLIDGYVKAGDLAHARQLFDRMP- 204 (490)
Q Consensus 128 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~- 204 (490)
+...++++++...- |.......+.-.+.....+. .+...+..+....+ .+++.+-..|......+-..+++....
T Consensus 94 ~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~ 171 (517)
T PF12569_consen 94 EKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVN 171 (517)
T ss_pred HHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 66677777766542 33333333322222212222 33444444444443 466666666665544444444444321
Q ss_pred -----------------CCCe--ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHH
Q 042265 205 -----------------FRDA--VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD-NIALVSALSACARLGELEQGKN 264 (490)
Q Consensus 205 -----------------~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 264 (490)
.|.. .++..+...|...|++++|++++++.++. .|+ +..|..-.+.+-+.|++.+|..
T Consensus 172 ~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 172 SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 0111 24566677788888888888888888875 454 5577777888888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee----------hH--HHHHHHHHHcCChHHHHHHH
Q 042265 265 IHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF----------TW--NAMLVGLAMHGLGRLSLVYF 332 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~~~A~~~~ 332 (490)
.++...+.. .-|-.+-+-.+..+.+.|++++|.+++....+++.. .| .....+|.+.|++..|++.|
T Consensus 250 ~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 250 AMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888776 566677777778888888888888888777665421 12 23356777888888888887
Q ss_pred HHHHHC--CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC---------------
Q 042265 333 SRMIEA--RIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL--------------- 395 (490)
Q Consensus 333 ~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------- 395 (490)
....+. .+.-|..-|... |.+.+-+..=.++++---..+..+.-.......+..|.+.-+
T Consensus 329 ~~v~k~f~~~~~DQfDFH~Y---c~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~ 405 (517)
T PF12569_consen 329 HAVLKHFDDFEEDQFDFHSY---CLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNE 405 (517)
T ss_pred HHHHHHHHHHhcccccHHHH---HHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccc
Confidence 776552 223333333322 445554433333332221111112222233344445432110
Q ss_pred -H--HHHHHHHhhCC-------------------------------CCC---CHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 042265 396 -I--EEALEMIKKMP-------------------------------MGG---DVFVWSGLLGGCRIHG-NVEIAEAAAEH 437 (490)
Q Consensus 396 -~--~~A~~~~~~~~-------------------------------~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~ 437 (490)
. .+..+.-++.. ..+ |.. .+..-+.+.. =.++|.++++.
T Consensus 406 ~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~A~kfl~p 482 (517)
T PF12569_consen 406 NMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEEAMKFLKP 482 (517)
T ss_pred cCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcHHHHHHHHHHH
Confidence 0 00001110000 000 111 1222233333 34789999999
Q ss_pred HHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 438 VMKLKPEDGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 438 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
+.+..|++..++..-..+|.+.|++--|.+.+.+
T Consensus 483 L~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 483 LLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999888887654
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.6e-08 Score=91.21 Aligned_cols=384 Identities=15% Similarity=0.060 Sum_probs=230.5
Q ss_pred CCCChhHHHHhhccC---CCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCCcHHHHH
Q 042265 57 TTDPLSYALSIFNNI---PYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF-YSFPFLLRACSQLCSHSLAQT 132 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~ 132 (490)
..|++++|+..|... .++|.+.|..-..+|++.|++++|++=-.+-++. .|+- ..|+....++.-.|++++|..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHH
Confidence 479999999999764 3678899999999999999999998877776664 5664 479999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh------cc-cC------CchhHHHHHHHHH----------h
Q 042265 133 IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDE------IL-YR------DVVSCNTLIDGYV----------K 189 (490)
Q Consensus 133 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------~~-~~------~~~~~~~l~~~~~----------~ 189 (490)
.|.+-++.. +.+...++.+..++... . .+.+.|.. +. .| ....|..++..+- .
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999988875 66777788888877211 1 11111111 10 00 1112333332221 1
Q ss_pred cCCHHHHHHHHhhC----------------CCC------------C----------eehHHHHHHHHHhcCChhHHHHHH
Q 042265 190 AGDLAHARQLFDRM----------------PFR------------D----------AVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 190 ~~~~~~a~~~~~~~----------------~~~------------~----------~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
-..+..+.-.+... ..| | ..-...+.++..+..+++.|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 11111111111110 011 0 112456677777778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHH-------HHHHHHHhcCCHHHHHHHHhcc
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLST-------GLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
....+.. -+..-++....++...|....+........+.|.. ...-++ .+..+|.+.++++.++..|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 8877654 34444566666777778777777766666655421 111222 2333555666777777777664
Q ss_pred CCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHH
Q 042265 305 QEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG-VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHY 383 (490)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 383 (490)
..+... -....+....+++........-. .|.. .-...-...+.+.|++..|...|.++.+ ..|.|...|
T Consensus 325 Lte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lY 395 (539)
T KOG0548|consen 325 LTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLY 395 (539)
T ss_pred hhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHH
Confidence 432111 11122233344444444333322 2222 1111123445667888888888888777 456677777
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
..-.-+|.+.|.+..|++-.+.... .| ....|..=+.++....+++.|.+.|++.++.+|.+......+.++...
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 7777788888888877776665432 22 444455445555566678888888888888888777666666655554
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=6.6e-10 Score=94.98 Aligned_cols=223 Identities=13% Similarity=0.090 Sum_probs=178.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC--CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcc
Q 042265 180 CNTLIDGYVKAGDLAHARQLFDRMP--FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL-VSALSACARL 256 (490)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~ 256 (490)
-+.+.++|.+.|.+.+|.+.|+... .+-+.||-.|-++|.+..++..|+.++.+-++. .|-.+|| .-+.+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3678889999999999999998765 346789999999999999999999999988875 4655555 5677888889
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHH
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFS 333 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (490)
++.+.|.++|+...+.. +.+++....+...|.-.++++-|+.+|+++.+ .++..|+.+.-+|.-.++++-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999999886 67777777888888889999999999998765 578889999999999999999999998
Q ss_pred HHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 334 RMIEARIKPD--GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 334 ~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
+....--.|+ ...|-.+-......||...|.+.|+-... ....+...++.|.-.-.+.|++++|..+++...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 8876544444 34566666667778888888888888776 555566677777777777777777777776554
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=7e-10 Score=100.26 Aligned_cols=216 Identities=13% Similarity=-0.015 Sum_probs=153.6
Q ss_pred CChHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHH
Q 042265 257 GELEQGKNIHRYIELNQ-IRV--DSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
+..+.++.-+.++.... ..| ....+..+...|.+.|+.++|...|++..+ .++..|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566677777777542 122 245678888899999999999999998764 356789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC
Q 042265 331 YFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG 410 (490)
Q Consensus 331 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (490)
.|++..+.... +..++..+..++...|++++|.+.+++..+. .+.+. ........+...++.++|...|++.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999985322 4567788888888999999999999999874 22232 22222223456788999999996643221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVM-------KLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
+...|. ........|+...+ ..++.+. +..|+...+|..++.++.+.|++++|...|++..+.+..
T Consensus 196 ~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 DKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 222232 12223334555433 2444443 355666779999999999999999999999999876643
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.17 E-value=4.5e-08 Score=92.75 Aligned_cols=373 Identities=16% Similarity=0.114 Sum_probs=214.8
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY 112 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 112 (490)
.+.+-.-.++.++. .++.+|..+|-+-. .-...|..|....+|++|+.+-+. .|.+.-..
T Consensus 531 t~fykvra~lail~------------kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~---~~~p~~ek 590 (1636)
T KOG3616|consen 531 TDFYKVRAMLAILE------------KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEA---KGHPALEK 590 (1636)
T ss_pred chHHHHHHHHHHHH------------hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHH
Confidence 44445556666666 67888888885522 112345566666777777776543 22222122
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh--cccCCchhHHHHHHHHHhc
Q 042265 113 SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDE--ILYRDVVSCNTLIDGYVKA 190 (490)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~ 190 (490)
.-.+.++++...|+-++|-++- . .+.. -...|..|.+.|.+.+|.+.-.. .+..|......+..++.+.
T Consensus 591 lk~sy~q~l~dt~qd~ka~elk----~----sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~ 661 (1636)
T KOG3616|consen 591 LKRSYLQALMDTGQDEKAAELK----E----SDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKG 661 (1636)
T ss_pred HHHHHHHHHHhcCchhhhhhhc----c----ccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhh
Confidence 2334455555556555554321 1 1111 12345666666666665544321 1222333333333333333
Q ss_pred CCHHHHHHHHhhCCCCC--------------------------ee-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 042265 191 GDLAHARQLFDRMPFRD--------------------------AV-SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDN 243 (490)
Q Consensus 191 ~~~~~a~~~~~~~~~~~--------------------------~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 243 (490)
.-+++|-++|+++..++ ++ .-......+...|+++.|...|-+..
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-------- 733 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-------- 733 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------
Confidence 33333333333333221 11 11122233444555555555443321
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcC
Q 042265 244 IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHG 323 (490)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (490)
.....+.+......|.+|+.+++.+.... .-...|..+.+-|...|+++.|.++|-+.. .++-.|..|.+.|
T Consensus 734 -~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 734 -CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAG 805 (1636)
T ss_pred -hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccc
Confidence 12233455566778888888888777663 334556777888889999999999887644 3556778888999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHH
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMI 403 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (490)
+|++|.++-.+. .|.......|..-..-+-+.|++.+|+++|-.+.. |+. .|.+|-+.|..++.+++.
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHH
Confidence 999888875544 33344445565555667778888888887755433 432 567788888888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 042265 404 KKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
++-....-..|-..+..-+-..|+.+.|+..|-++- -|..-...|...+.|++|.++-+
T Consensus 874 ~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 874 EKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 775533344556666777777888888877776642 34555566666777777766543
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=2.3e-08 Score=95.59 Aligned_cols=148 Identities=15% Similarity=0.043 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh-------------CCCCCc--hHHHHHHhhhh
Q 042265 327 LSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVY-------------GVSKEL--KHYGCMADLLG 391 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~ 391 (490)
.+...+..+..+|+++ +|..+-..|.......-..+++....... .-+|+. .++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3455666777777653 45555555555555555555555544321 112333 34466788889
Q ss_pred hcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 392 RAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
..|++++|++++++.. ..| .+..|..-+..+.+.|++++|.+.++.+.++++.|..+-+..+..+.++|++++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999755 445 57788888888999999999999999999999999988888889999999999999999
Q ss_pred HHHhcCCC
Q 042265 470 RSLDAGKI 477 (490)
Q Consensus 470 ~~m~~~~~ 477 (490)
....+.+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98877765
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.16 E-value=6.9e-08 Score=83.47 Aligned_cols=302 Identities=14% Similarity=0.046 Sum_probs=194.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHH---HHHhcCCHHHHHHHHhhCCCCCeehHHHH---HHHH
Q 042265 145 DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLID---GYVKAGDLAHARQLFDRMPFRDAVSWGTL---VAGY 218 (490)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~ 218 (490)
++.-...+.+.+...|++..|+.-|...++-|+..|.++.+ .|...|+-..|+.-++++.+..+..+.+- ...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 34444556666777777777777777777777766665543 45666666666666666544333333332 2456
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC------------HH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPD------------NI--ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGL 284 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~------------~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (490)
.++|.+++|..=|+..++....-+ .. .....+..+.-.|+...|+.....+++.. +.|...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 777888888777777776532110 11 12233445556788888888888888776 6788888888
Q ss_pred HHHHHhcCCHHHHHHHHhccC---CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHHH-------
Q 042265 285 VDFYAKCGYINTAIEIFESSQ---EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVT----ILGA------- 350 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~l------- 350 (490)
..+|...|++..|+.-++... ..+...+.-+-..+...|+.+.++...++-.+. .||... |..+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHH
Confidence 888888888888887665444 456666666677777888888887777776653 455421 1111
Q ss_pred --HHHhhccCcHHHHHHHHHHhHHhhCCC---CCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH
Q 042265 351 --LVGCSHAGLVDEARKLFDEMESVYGVS---KELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCR 423 (490)
Q Consensus 351 --~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 423 (490)
+......++|.++.+-.+...+. ... .....+..+-.++...|++-+|++...++. ..| |+.++..-..+|.
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 11233456677777777776653 211 112234455666777788888888777654 333 5777877788888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
-...++.|+.-|+.+.+.++++..+-.
T Consensus 353 ~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 888888888888888888887764444
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=7.5e-07 Score=83.65 Aligned_cols=409 Identities=17% Similarity=0.083 Sum_probs=254.6
Q ss_pred HHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccC---CCCCcccHHHHHH
Q 042265 8 KRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNI---PYPSTFSYNTIIR 84 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~ 84 (490)
.+.|+.+.+-.......+.+ + .|++.|..+.-.+. ...++++|++.+... .+.|...|.-+--
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~---~S~vCwHv~gl~~R----------~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl 117 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-L---KSHVCWHVLGLLQR----------SDKKYDEAIKCYRNALKIEKDNLQILRDLSL 117 (700)
T ss_pred hcccchHHHHHHHHHHhccC-c---ccchhHHHHHHHHh----------hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34455555555555555555 4 78899998888888 889999999999864 3567777877776
Q ss_pred HHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC-CCCchhHHHHHH------HHHH
Q 042265 85 AHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLG-FICDVFVLNSLM------HVYC 157 (490)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li------~~~~ 157 (490)
.-++.|+++.......+..+.. +.....|..+..+.--.|+...|..+++...+.. -.|+...+.... ....
T Consensus 118 LQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~ 196 (700)
T KOG1156|consen 118 LQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILI 196 (700)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 7778889999888888888753 3344568888888888899999999999998865 356666654433 3455
Q ss_pred hcCChHHHHHHHHhcccC--Cch-hHHHHHHHHHhcCCHHHHHHHHhhCCCC--CeehHH-HHHHHHHhcCChhHHH-HH
Q 042265 158 VFHRLRDAQELFDEILYR--DVV-SCNTLIDGYVKAGDLAHARQLFDRMPFR--DAVSWG-TLVAGYAQSDQCEEAI-QL 230 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~l~~~~~~~g~~~~A~-~~ 230 (490)
+.|..+.|.+.+...... |.. .-.+-...+.+.+++++|..++..+..+ |...|. .+..++.+-.+.-++. .+
T Consensus 197 E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 197 EAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred HcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 678888888887766433 222 3344566788999999999999998755 333344 4444444333334444 55
Q ss_pred HHHHHhCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHhccC
Q 042265 231 FCNMMDLDIKPDNIAL-VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINT----AIEIFESSQ 305 (490)
Q Consensus 231 ~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~ 305 (490)
|....+. .|....- ..=++......-.+....++....+.|+++-... +...|-.-...+- +..+...+.
T Consensus 277 y~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~ 351 (700)
T KOG1156|consen 277 YAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLS 351 (700)
T ss_pred HHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcc
Confidence 6555442 1211111 1111222222333445566777777776553332 2222221111110 111111111
Q ss_pred --------------CCCee--hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHH
Q 042265 306 --------------EKNLF--TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG-VTILGALVGCSHAGLVDEARKLFD 368 (490)
Q Consensus 306 --------------~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 368 (490)
.|... ++..++..+-..|+++.|...++..+++ .|+. .-|..-.+.+...|++++|..+++
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ 429 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLD 429 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 12222 3445677788889999999988888765 4543 234444567788899999999999
Q ss_pred HhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-CH--------HHHHHH--HHHHHhcCCHHHHHHHHHH
Q 042265 369 EMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-DV--------FVWSGL--LGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~--------~~~~~l--~~~~~~~~~~~~a~~~~~~ 437 (490)
+..+ -..+|...-..-+.-..++++.++|.++.......+ +. -.|..+ +.+|.+.|++..|..-|..
T Consensus 430 ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 430 EAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 8887 455665554455666678888999988887776544 11 123222 2346677777777666655
Q ss_pred HHh
Q 042265 438 VMK 440 (490)
Q Consensus 438 ~~~ 440 (490)
+-+
T Consensus 508 i~k 510 (700)
T KOG1156|consen 508 IEK 510 (700)
T ss_pred HHH
Confidence 544
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=2.4e-09 Score=98.73 Aligned_cols=219 Identities=16% Similarity=0.094 Sum_probs=165.7
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHH
Q 042265 253 CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSL 329 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 329 (490)
+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+- |....-.|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356777777777777777776 667777887877777777777777777776653 3445555666677777777888
Q ss_pred HHHHHHHHCCCC-----C---CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHH
Q 042265 330 VYFSRMIEARIK-----P---DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALE 401 (490)
Q Consensus 330 ~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (490)
+.++.-+....+ + +...-.. ..+..........++|-++....+..+|+.+...|.-.|--.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 877776543210 0 0000000 12233334556667777776655666899999999999999999999999
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 402 MIKKM-PMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 402 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.|+.. ..+| |..+|+.|...++...+.++|+..|.+++++.|.-..+.+.|+..|...|.|++|.+.|=....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99985 4666 9999999999999999999999999999999999999999999999999999999999876543
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3.9e-07 Score=87.64 Aligned_cols=375 Identities=13% Similarity=0.053 Sum_probs=208.3
Q ss_pred chhHHHHHH--HhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhC-C----
Q 042265 34 CHILTTILY--AITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTV-S---- 106 (490)
Q Consensus 34 ~~~~~~~l~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~---- 106 (490)
|+.+=.+++ ++|. .-|+.+.|.+-.+.++ +-..|..+.+.+.+.++.+-|.-.+-.|... |
T Consensus 725 d~~TRkaml~FSfyv----------tiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYV----------TIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred CHHHHHhhhceeEEE----------EeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHH
Confidence 555556664 4566 7899999988877765 3468999999999999999888877777542 1
Q ss_pred ----CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC-CchhHH
Q 042265 107 ----IPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR-DVVSCN 181 (490)
Q Consensus 107 ----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 181 (490)
..|+ .+=..+.-.....|-+++|+.+|.+-.+.+ .|=+.|-..|.+++|.++-+.-... =..||.
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy 862 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYY 862 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHH
Confidence 1222 222223333456788899999998877643 3445566789999998886654222 224777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 042265 182 TLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQ 261 (490)
Q Consensus 182 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 261 (490)
....-+-..+|++.|++.|++...+--..+..|. .++.....+.+.+ -|...|.-...-+-..|+.|.
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHH
Confidence 7777788889999999999887543222221111 1111111222221 122333334444455566666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 042265 262 GKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK 341 (490)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 341 (490)
|+.+|..+.. |-++++..+-.|+.++|-++-++- .|......+...|-..|++.+|..+|.+.+.
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---- 995 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---- 995 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----
Confidence 6666655443 223444444456666655554432 2334444555556666666666666655432
Q ss_pred CCHHHHHHHHHHh---------------hccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHh--
Q 042265 342 PDGVTILGALVGC---------------SHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIK-- 404 (490)
Q Consensus 342 p~~~~~~~l~~~~---------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-- 404 (490)
|...|+.| ....+.-.|-++|++.-- -+...+..|.++|.+.+|+++-=
T Consensus 996 -----fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~---------~~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 996 -----FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG---------YAHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred -----HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch---------hhhHHHHHHHhhcchHHHHHHHHhh
Confidence 12222211 112223333344433321 01223445566666666655321
Q ss_pred -----------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------hCCCC------
Q 042265 405 -----------KMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK----------------------LKPED------ 445 (490)
Q Consensus 405 -----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------~~p~~------ 445 (490)
.+....|+...+.-...+..+.++++|..++-.+.+ +.|..
T Consensus 1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccH
Confidence 111112666666666666666666666555443322 11211
Q ss_pred ---CchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 446 ---GGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 446 ---~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
..++..++..|.+.|.|..|.+-|.+
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 13667888889999988877765543
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=1.5e-08 Score=95.71 Aligned_cols=226 Identities=18% Similarity=0.147 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcccC-------Cch----hHHHHHHHHHhcCCHHHHHHHHhhCC-------CC--
Q 042265 147 FVLNSLMHVYCVFHRLRDAQELFDEILYR-------DVV----SCNTLIDGYVKAGDLAHARQLFDRMP-------FR-- 206 (490)
Q Consensus 147 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~-- 206 (490)
.+...+...|...|+++.|..++++.+.. +.. ..+.+...|...+++++|..+|+++. -+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666555322 111 12234455666666666666666543 11
Q ss_pred --CeehHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCC-CCHH-HHHHHHHHHHccCChHHHHHHHHHHHHc---CC
Q 042265 207 --DAVSWGTLVAGYAQSDQCEEAIQLFCNMMD-----LDIK-PDNI-ALVSALSACARLGELEQGKNIHRYIELN---QI 274 (490)
Q Consensus 207 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 274 (490)
-..+++.|..+|.+.|++++|...++...+ .|.. |... .++.+...|...+++++|..+++...+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234677777788888888888777776543 1222 2222 4567777888899999998888876553 11
Q ss_pred CC----ChhhHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CeehHHHHHHHHHHcCChHHHHHHHHHHHH--
Q 042265 275 RV----DSFLSTGLVDFYAKCGYINTAIEIFESSQEK-----------NLFTWNAMLVGLAMHGLGRLSLVYFSRMIE-- 337 (490)
Q Consensus 275 ~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-- 337 (490)
.+ -..+++.|...|...|++++|.++++++... ....++.|...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 2467889999999999999999999876531 124677888889999999999988877543
Q ss_pred --CCC-CC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 338 --ARI-KP-DGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 338 --~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.|. .| ...+|..|...|...|+++.|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 332 12 246788889999999999999988887763
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=5.2e-08 Score=79.76 Aligned_cols=193 Identities=15% Similarity=0.038 Sum_probs=89.0
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHH
Q 042265 251 SACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRL 327 (490)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 327 (490)
-.|...|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++... .+..+.|....-+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 33444444444444444444433 33333444444444444444444444443332 133344444444455555555
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC
Q 042265 328 SLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM 406 (490)
Q Consensus 328 A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (490)
|...|++....-.-| -..+|..+.-+..+.|+.+.|...|++..+ ..+..+.....+.....+.|++..|...++..
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 555555544432111 123444444444455555555555555554 33333444444555555555555555555544
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 407 PMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 407 ~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.... +..++...|..-...|+.+.+.++=.++.+..|...
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 3222 444444444445555665555555555555555544
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=6.2e-07 Score=88.10 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=132.1
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..++..+.+.|.+++-.+++....+....|.+. +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3567888888888888888888776442 356678888888888888888888887777765455443 56778
Q ss_pred HHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
+|++.+++.+-++++. -||.........-|...|.++.|.-+|... ..|..|...+...|+++.|...
T Consensus 1175 AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877766653 344444555555555556665555444322 2344455555555555555444
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
-+++ .+..+|..+..+|...+.+.-|.-.=-.+. -.+.-+..++..|...|-+++.+.+++..+.+...+.
T Consensus 1243 aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii--vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1243 ARKA-------NSTKTWKEVCFACVDKEEFRLAQICGLNII--VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred hhhc-------cchhHHHHHHHHHhchhhhhHHHhcCceEE--EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 3332 234455555555544443332211000000 0334455566666666666666666666666655556
Q ss_pred chHHHHHHHHHh
Q 042265 447 GVYKVLADVYAN 458 (490)
Q Consensus 447 ~~~~~l~~~~~~ 458 (490)
+.|..|+..|.+
T Consensus 1314 gmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1314 GMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHHHh
Confidence 666666655544
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.08 E-value=4e-07 Score=87.12 Aligned_cols=416 Identities=13% Similarity=0.018 Sum_probs=261.4
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--C--CC-cc
Q 042265 3 LNNFIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--Y--PS-TF 77 (490)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~--~~-~~ 77 (490)
++..+..||.++.+...+++....- + .....|+.+...|. -.|.-..|..+++... + |+ +.
T Consensus 329 Lt~al~~~g~f~~lae~fE~~~~~~-~---~~~e~w~~~als~s----------aag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 329 LTFALSRCGQFEVLAEQFEQALPFS-F---GEHERWYQLALSYS----------AAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh-h---hhHHHHHHHHHHHH----------HhccchHHHHHHHhhcccccCCCcch
Confidence 4567889999998888888777654 4 57778888887887 6888889999987643 2 32 33
Q ss_pred cHHHHHHHHH-cCCCchhHHHHHHHhhhC--CC--CCCcccHHHHHHHHhcc-----------CCcHHHHHHHHHHHHhC
Q 042265 78 SYNTIIRAHT-LFSSPLNAVVLFSQMRTV--SI--PPDFYSFPFLLRACSQL-----------CSHSLAQTIHSQVLKLG 141 (490)
Q Consensus 78 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~g 141 (490)
.+-..-..|. +.+..+++++.-.+.... +. ......|..+.-+|... ....++.+.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333343 346667777666665541 11 12233444444444321 12346778888888876
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHhccc----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHH
Q 042265 142 FICDVFVLNSLMHVYCVFHRLRDAQELFDEILY----RDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTL 214 (490)
Q Consensus 142 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l 214 (490)
+-|+.+...+.--|+..++++.|.+..++..+ -+...|..+.-.+...+++.+|+.+.+..... |-.....-
T Consensus 475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 44555555556667888999999999888744 37789999999999999999999998876533 22222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHH--
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLD-IKPDNIALVSALSACARLGELEQGKNIHRYIELN--QIRVDSFLSTGLVDFYA-- 289 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~-- 289 (490)
+..-..-++.++++.....+..-- -.+.. ...++-....+....+.-. .......++..+.....
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 333344677777777666654310 00000 0111111111111111100 10111222222222111
Q ss_pred -hcCCHHHHHHHHhccCCCC------eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 042265 290 -KCGYINTAIEIFESSQEKN------LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDE 362 (490)
Q Consensus 290 -~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 362 (490)
+.-..+..+..+.....|+ ...|......+.+.+..++|...+.+..... .-....|......+...|.+++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHH
Confidence 1111111111111112222 1245566677888899999998888877642 2344566666667778899999
Q ss_pred HHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHH--HHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 363 ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALE--MIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
|.+.|..... -.|.++....++..++.+.|+..-|.. ++..+. ..| +...|..+...+.+.|+.+.|.+.|..+
T Consensus 703 A~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999998886 455567788899999999998887777 777654 444 9999999999999999999999999999
Q ss_pred HhhCCCCC
Q 042265 439 MKLKPEDG 446 (490)
Q Consensus 439 ~~~~p~~~ 446 (490)
.++.+.+|
T Consensus 781 ~qLe~S~P 788 (799)
T KOG4162|consen 781 LQLEESNP 788 (799)
T ss_pred HhhccCCC
Confidence 99888776
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=5.3e-09 Score=93.11 Aligned_cols=226 Identities=13% Similarity=0.058 Sum_probs=147.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHH
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR-VDSFLSTGLVDFY 288 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 288 (490)
....+.+++...|+++.++ .+..... .|.......+...+...++-+.+..-++........ .+..+......++
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 4445667777777766543 3333332 566555555555554434444444443333222222 2233333344556
Q ss_pred HhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCcHHHHH
Q 042265 289 AKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH----AGLVDEAR 364 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 364 (490)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 6778888888888765 45566677788899999999999999999864 333 445555555432 34688999
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNV-EIAEAAAEHVMKL 441 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 441 (490)
.+|+++.+ ..++++.+.+.+..+....|++++|.+++++.. ..| ++.++..++.+....|+. +.+.+++.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999877 567788888889999999999999999988744 333 777888888888888877 7788888888889
Q ss_pred CCCCC
Q 042265 442 KPEDG 446 (490)
Q Consensus 442 ~p~~~ 446 (490)
.|+++
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 99876
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.3e-06 Score=83.27 Aligned_cols=276 Identities=10% Similarity=0.074 Sum_probs=199.6
Q ss_pred CChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042265 160 HRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI 239 (490)
Q Consensus 160 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 239 (490)
+.+++|.+.-++.. .+..|..+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.|++-.+++.-.++..-
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 44555555544443 34579999999999999999999886654 678899999999999999999999988887766
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGL 319 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 319 (490)
.|... +.++-+|++.+++.+..++.. .|+......+.+-+...|.++.|.-+|.. +.-|..|...+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTL 1230 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHH
Confidence 66655 478889999999887766553 57887888888999999999999988874 45688899999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHH
Q 042265 320 AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEA 399 (490)
Q Consensus 320 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (490)
...|+++.|...-++. .+..||..+-.+|...+.+..|. |... .+.....-...++.-|...|-+++.
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHH
Confidence 9999999998876654 36678988888888777665442 2211 2233444567788889999999999
Q ss_pred HHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hC-C------CCCchHHHHHHHHHhcCChHHHH
Q 042265 400 LEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK-LK-P------EDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 400 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
+.+++.... +.....|..+.-.|.+- ++++..+.++-.-. ++ | +....|..+...|.+-..|+.|.
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 999887542 22555666666666654 34554444443322 11 1 12235667777777777776664
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.03 E-value=8.7e-07 Score=84.33 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=118.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC--eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 042265 185 DGYVKAGDLAHARQLFDRMPFRD--AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQG 262 (490)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 262 (490)
.+-.....+.+|+.+++.+...+ ..-|..+...|...|+++.|.++|.+.- .++-.+..|.+.|+|+.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 33455667777777777666553 2346667777777777777777775431 244556677777777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 042265 263 KNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP 342 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 342 (490)
.++-.+.. |.......|.+-.+-+-+.|++.+|.++|-.+..|+. .|+.|-+.|..+..+++..+-... .
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---h
Confidence 66654432 3334455555556666677777777777777766653 356677777777776665543221 1
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHh
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIK 404 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (490)
-..|-..+..-+...|+...|+..|-+... |..-+.+|...+.+++|.++-+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHh
Confidence 224455556666677777777776665544 4455556666666666665544
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=3.9e-09 Score=93.95 Aligned_cols=246 Identities=13% Similarity=0.036 Sum_probs=168.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.+.. .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344566788988887665 322222223445567788888889877543 3333333 66666666666555544566
Q ss_pred HHHHHHHhccC-CC----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 042265 295 NTAIEIFESSQ-EK----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDE 369 (490)
Q Consensus 295 ~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (490)
+.+..-+++.. ++ +..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67776665544 32 1122222234456679999999887642 3567777888999999999999999999
Q ss_pred hHHhhCCCCCchHHHHHHhhhh----hcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 370 MESVYGVSKELKHYGCMADLLG----RAGLIEEALEMIKKMPMG--GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
|.+. ..| .+...+..++. -.+.+.+|..+|+++..+ +++.+.+.+..+....|++++|.++++++++.+|
T Consensus 157 ~~~~---~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQI---DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCC---SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhc---CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 9863 233 33444555443 234799999999998765 3888899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCh-HHHHHHHHHHhcC
Q 042265 444 EDGGVYKVLADVYANADRW-EDVVKIRRSLDAG 475 (490)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 475 (490)
.++.++..++.+....|+. +.+.+++.++++.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999998898987 6677888887653
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=8.4e-07 Score=83.34 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=39.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---Ce----ehHHHHHHHHHHc
Q 042265 250 LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NL----FTWNAMLVGLAMH 322 (490)
Q Consensus 250 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~----~~~~~l~~~~~~~ 322 (490)
...+...|++++|...+++..+.. +.+...+..+..++...|++++|..++++..+. +. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334444555555555555554443 333444444444555555555555554443321 01 1122344445555
Q ss_pred CChHHHHHHHHHHH
Q 042265 323 GLGRLSLVYFSRMI 336 (490)
Q Consensus 323 ~~~~~A~~~~~~m~ 336 (490)
|++++|..++++..
T Consensus 200 G~~~~A~~~~~~~~ 213 (355)
T cd05804 200 GDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHHHh
Confidence 55555555555543
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=1.2e-06 Score=82.40 Aligned_cols=258 Identities=12% Similarity=-0.002 Sum_probs=162.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACA----RLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK 290 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 290 (490)
...+...|++++|.+.+++..+.. +.+...+.. ...+. ..+..+.+.+.+.. .....+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 445677899999999999888753 223333332 22222 23445555555544 111112233444566778899
Q ss_pred cCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhccCcHHHHH
Q 042265 291 CGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPDG--VTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~ 364 (490)
.|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999998764 3556778888899999999999999999887532 2232 34556778889999999999
Q ss_pred HHHHHhHHhhCCCCCchHH-H--HHHhhhhhcCCHHHHHHH--H-hh---C-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 365 KLFDEMESVYGVSKELKHY-G--CMADLLGRAGLIEEALEM--I-KK---M-PMGGDVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~---~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.++++........+..... + .+..-+...|..+.+.++ + .. . ..............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999986421111222111 1 222333334433333332 1 11 1 1111122223566668889999999999
Q ss_pred HHHHHh-hCC---C-----CCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 435 AEHVMK-LKP---E-----DGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 435 ~~~~~~-~~p---~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++.+.. ... . ........+.++...|++++|.+.+......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999877 222 1 2334456667788999999999999887643
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=4.3e-06 Score=80.73 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=122.1
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC-------------CCCcccHHHHHHHHHcCCCchhHHHHH
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP-------------YPSTFSYNTIIRAHTLFSSPLNAVVLF 99 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~li~~~~~~g~~~~A~~~~ 99 (490)
.+..+|+.+.++|. +..+++-|.-.+-.|. .++ ..-......-...|..++|..+|
T Consensus 755 kS~~vW~nmA~McV----------kT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lY 823 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCV----------KTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILY 823 (1416)
T ss_pred hhhHHHHHHHHHhh----------hhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHH
Confidence 67788999999999 8888888877766553 122 22223333346779999999999
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc-----
Q 042265 100 SQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY----- 174 (490)
Q Consensus 100 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 174 (490)
.+-++ |..|=..|...|.+++|.++-+.=-+. .=..||.....-+-..++.+.|++.|++...
T Consensus 824 r~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev 891 (1416)
T KOG3617|consen 824 RQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV 891 (1416)
T ss_pred HHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH
Confidence 99876 445555667789999998887653221 2235666677777778899999999888722
Q ss_pred ------------------CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CCeehHH
Q 042265 175 ------------------RDVVSCNTLIDGYVKAGDLAHARQLFDRMPF------------------------RDAVSWG 212 (490)
Q Consensus 175 ------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~ 212 (490)
+|...|.-....+-..|+.+.|+.+|+.... .|..+..
T Consensus 892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcY 971 (1416)
T KOG3617|consen 892 FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACY 971 (1416)
T ss_pred HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHH
Confidence 2444455555556678888888888877541 1344555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMM 235 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~ 235 (490)
.+.+.|-..|++.+|..+|.+.+
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666667777777777666543
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.8e-07 Score=78.30 Aligned_cols=302 Identities=14% Similarity=0.107 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--CeehHH-HHHHHHHhc
Q 042265 148 VLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR--DAVSWG-TLVAGYAQS 221 (490)
Q Consensus 148 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~l~~~~~~~ 221 (490)
-+++.+..+++..++..|++++....++ +....+.+..+|....++..|...++++... ...-|. --...+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3455555566667777777776655443 3334555556666666666666666665422 111121 123344555
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042265 222 DQCEEAIQLFCNMMDLDIKPDNIALVSALSA--CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIE 299 (490)
Q Consensus 222 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 299 (490)
+.+..|+++...|.+. |+...-..-+.+ ..+.+++..+..+.++.... .+..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHH
Confidence 6666666666555432 221111111111 12344444444444433221 123333333333445555555555
Q ss_pred HHhccCCC----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHhhccCcHHHHHHHHHHh
Q 042265 300 IFESSQEK----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG-----ALVGCSHAGLVDEARKLFDEM 370 (490)
Q Consensus 300 ~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~ 370 (490)
-|+...+- ....||..+ +..+.|+++.|++...++++.|++..+. ++. .+.+ ...|+. ..+....
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt---~~lh~Sa 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT---LVLHQSA 239 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---HHHHHHH
Confidence 55544431 223333332 2233455555555555555554331110 000 0000 000000 0000000
Q ss_pred HHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 371 ESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
-...+|.-...+.+.|+++.|.+.+..|+.+. |+.|+..+.-.- ..+++.+..+-+.-+++++|-.+
T Consensus 240 --------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 240 --------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPP 310 (459)
T ss_pred --------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCCh
Confidence 00112222333456677777777777776433 666666554322 23456666666666777777777
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 042265 447 GVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
.+|..++..|++..-++-|..++-
T Consensus 311 ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHh
Confidence 778777778887777777776654
No 99
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=4.3e-06 Score=73.00 Aligned_cols=380 Identities=10% Similarity=0.005 Sum_probs=220.6
Q ss_pred HHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHH-HHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 83 IRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLR-ACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
+.-+..++++..|+.+++.-...+-. ........|. ++...|++++|...+..+.+.. .++...+..|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 77788889999999999887654321 2224455444 4567899999999999988865 6778888888888888999
Q ss_pred hHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042265 162 LRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKP 241 (490)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 241 (490)
+.+|..+-.+..+ ++..-..|...-.+.++-++-..+-+.+.... .---+|.......-.+.+|+++|......+ |
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ 182 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN--P 182 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--h
Confidence 9999998877543 33344455566677888777777666665432 233345555555567999999999987653 5
Q ss_pred CHHHHHHH-HHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHH-------
Q 042265 242 DNIALVSA-LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWN------- 313 (490)
Q Consensus 242 ~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------- 313 (490)
.-...+.- .-+|.+..-++-+.++++-..+.- +.++...+.......+.=+-..|..-.+++.+.-...|.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 55555443 445677777888888888777653 444444454444444432222333333332221110111
Q ss_pred ----------------------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-----hccCcH
Q 042265 314 ----------------------------AMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC-----SHAGLV 360 (490)
Q Consensus 314 ----------------------------~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~g~~ 360 (490)
.++--|.+.+++++|..+.+++.. ..|-......+..+- ......
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 112223444555555555444321 122222222221111 111123
Q ss_pred HHHHHHHHHhHHhhCCCCCc-hHHHHHHhhhhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042265 361 DEARKLFDEMESVYGVSKEL-KHYGCMADLLGRAGLIEEALEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 437 (490)
.-|.+.|+..-+. +...|. .--.++...+.-..++++.+.+++.+.. ..|......+..+++..|++.+|+++|-+
T Consensus 340 KiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 3344444443332 222221 1223344444445566666666665542 11333344567777888888888888888
Q ss_pred HHhhCCCCCchHH-HHHHHHHhcCChHHHHHHHHHH
Q 042265 438 VMKLKPEDGGVYK-VLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 438 ~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m 472 (490)
+...+-.+..+|. .|+++|.++|..+-|+.++-++
T Consensus 419 is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 419 ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 7765534444554 5678888888888888877654
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=3.6e-06 Score=89.48 Aligned_cols=321 Identities=12% Similarity=0.013 Sum_probs=207.8
Q ss_pred HHHhcCChHHHHHHHHhccc----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CC---e-----ehHHHHHHHH
Q 042265 155 VYCVFHRLRDAQELFDEILY----RDVVSCNTLIDGYVKAGDLAHARQLFDRMPF----RD---A-----VSWGTLVAGY 218 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~l~~~~ 218 (490)
.....|+++.+...++.+.. .++.........+...|+++++...+..... .+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777776621 2333334445556778999998888875421 11 1 1222334556
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPDN----IALVSALSACARLGELEQGKNIHRYIELNQI---RV--DSFLSTGLVDFYA 289 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 289 (490)
...|++++|...+++..+.....+. ...+.+...+...|++++|...+.+...... .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999988763212221 2345566667789999999999888765411 11 1234456677888
Q ss_pred hcCCHHHHHHHHhccCC-------CC----eehHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHh
Q 042265 290 KCGYINTAIEIFESSQE-------KN----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEA--RIKP--DGVTILGALVGC 354 (490)
Q Consensus 290 ~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p--~~~~~~~l~~~~ 354 (490)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876442 11 122344556677789999999998887553 1112 223444455667
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCCchHH-----HHHHhhhhhcCCHHHHHHHHhhCCCCC--CH----HHHHHHHHHHH
Q 042265 355 SHAGLVDEARKLFDEMESVYGVSKELKHY-----GCMADLLGRAGLIEEALEMIKKMPMGG--DV----FVWSGLLGGCR 423 (490)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~l~~~~~ 423 (490)
...|++++|.+.++.+............+ ...+..+...|+.+.|.+++....... .. ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78999999999998886531111111111 112234456899999999987754321 11 12345667788
Q ss_pred hcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 424 IHGNVEIAEAAAEHVMKLK------PEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..|++++|...++++.... +....+...++.++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998731 112235677888999999999999999888754
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.91 E-value=6.6e-06 Score=71.55 Aligned_cols=311 Identities=10% Similarity=0.009 Sum_probs=197.1
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHH---HHHhccCCcHHHHHHHHHHHHhCCCCchhH-HHH
Q 042265 76 TFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLL---RACSQLCSHSLAQTIHSQVLKLGFICDVFV-LNS 151 (490)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~ 151 (490)
+.-.--+...+..+|++..|+..|....+- |+..|.++. ..|...|+...|..=+...++. .||... ...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 334445677788888888888888888763 344444443 4566678888888777777774 566432 233
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHH
Q 042265 152 LMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
-...+.+.|.+++|..-|+.+++.++.. +....++.+.--.++-. .....+..+...|+...|+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHH
Confidence 4456778888888888888886553311 00111111111111111 1223344455667777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee-
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF- 310 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 310 (490)
..+++.. +.|...|..-..+|...|++..|+.-++...+.. ..+...+-.+-..+...|+.+.++..+++..+-|+.
T Consensus 179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 7777642 3466666666777777777777776666666554 444555555666667777777777777666553332
Q ss_pred -----hHHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 311 -----TWNAM---------LVGLAMHGLGRLSLVYFSRMIEARIKPDGVT---ILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 311 -----~~~~l---------~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
.|-.+ +......++|.++++..+...+......... +..+-.++...|++.+|++.-.++..
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~- 335 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD- 335 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-
Confidence 11111 2234567888888888888877643322333 33444556778999999999999886
Q ss_pred hCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC
Q 042265 374 YGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG 409 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (490)
-.+.|..++..-..+|.-...++.|+.-|+.....
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44556888888888999999999999999887643
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.86 E-value=7.4e-05 Score=69.21 Aligned_cols=395 Identities=11% Similarity=0.069 Sum_probs=242.0
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY---PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPP 109 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 109 (490)
-|...|+.||.-+. .. .+++++..++++.. -+...|..-|....+.++++....+|.+....- -
T Consensus 18 ~di~sw~~lire~q----------t~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--L 84 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQ----------TQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--L 84 (656)
T ss_pred ccHHHHHHHHHHHc----------cC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--h
Confidence 78889999999998 44 89999999998752 356789999999999999999999999987653 4
Q ss_pred CcccHHHHHHHHhcc-CCcHH----HHHHHHHHH-HhCCCC-chhHHHHHHHH---------HHhcCChHHHHHHHHhcc
Q 042265 110 DFYSFPFLLRACSQL-CSHSL----AQTIHSQVL-KLGFIC-DVFVLNSLMHV---------YCVFHRLRDAQELFDEIL 173 (490)
Q Consensus 110 ~~~~~~~ll~~~~~~-~~~~~----a~~~~~~~~-~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~ 173 (490)
+...|..-+.---+. ++... ..+.|+-.. +.|+.+ +...|+..+.. |....+++...+++++++
T Consensus 85 nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 85 NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 455666666533222 33322 333344333 344433 33445555543 333445677788888874
Q ss_pred cC----------CchhHHHHHHHH-------HhcCCHHHHHHHHhhCCC------CCe---------------ehHHHHH
Q 042265 174 YR----------DVVSCNTLIDGY-------VKAGDLAHARQLFDRMPF------RDA---------------VSWGTLV 215 (490)
Q Consensus 174 ~~----------~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~------~~~---------------~~~~~l~ 215 (490)
.. |-..|..=|+.. -+..++..|.+++++... .+. ..|-.+|
T Consensus 165 ~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I 244 (656)
T KOG1914|consen 165 VTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWI 244 (656)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Confidence 42 222222222211 133445556666655430 000 1133333
Q ss_pred HHHHhcCC--------hhHHHHHHHHH-HhCCCCCCHHHHHH-H----HHHHHccCC-------hHHHHHHHHHHHHcCC
Q 042265 216 AGYAQSDQ--------CEEAIQLFCNM-MDLDIKPDNIALVS-A----LSACARLGE-------LEQGKNIHRYIELNQI 274 (490)
Q Consensus 216 ~~~~~~g~--------~~~A~~~~~~m-~~~~~~p~~~~~~~-l----~~~~~~~~~-------~~~a~~~~~~~~~~~~ 274 (490)
.--...+- .....-.+++. .-.+..|+...... . -..+...|+ -+++..+++.....-.
T Consensus 245 ~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 245 KWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 22111110 01122222222 11233343332111 1 112222333 3455556665554433
Q ss_pred CCChhhHHHHHHHHHhcC---CHHHHHHHHhccCC----CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHH
Q 042265 275 RVDSFLSTGLVDFYAKCG---YINTAIEIFESSQE----KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP-DGVT 346 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~ 346 (490)
..+..+|..+.+.--..- ..+.....++++.. .-..+|...|..-.+..-...|..+|.+..+.+..+ ....
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence 334444444433221111 24555555555443 345678888888888899999999999999988777 6677
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGG 421 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~ 421 (490)
..+++..+| .++.+-|.++|+.-.+. ...++.--...++-+...++-..|..+|++...+. ...+|..++..
T Consensus 405 a~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 405 AAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 788888766 68899999999998884 44445555677888889999999999999876542 66899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p 443 (490)
-..-|+...+.++-++.....|
T Consensus 482 ES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcc
Confidence 9999999999999999888666
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=4e-07 Score=79.90 Aligned_cols=182 Identities=12% Similarity=-0.043 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCC---Ce---ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEK---NL---FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG--VTILG 349 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ 349 (490)
...+..++..+.+.|+++.|...|+++.+. ++ ..+..+..++...|++++|...++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 344455555566666666666666655432 11 24455566666777777777777777664321111 12333
Q ss_pred HHHHhhc--------cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042265 350 ALVGCSH--------AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGG 421 (490)
Q Consensus 350 l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 421 (490)
+..++.. .|+.++|.+.++.+.+. .+.+...+..+..... ..... ......+...
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~~ 175 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHHH
Confidence 3333332 26788888888888763 2223222222211100 00000 0112245667
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDG---GVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+.+.|++++|+..++++++..|+++ .++..++.++.+.|++++|..+++.+....
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8899999999999999999877654 688999999999999999999999887653
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=1.6e-05 Score=84.72 Aligned_cols=360 Identities=11% Similarity=-0.063 Sum_probs=211.3
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF-YSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
......+...|++.+|...+...... +.. .............|+++.+..+++.+.......+..........+..
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 33445566667766666544433211 000 01111222334456777766666654221112222233344455566
Q ss_pred cCChHHHHHHHHhccc---C-C---c-----hhHHHHHHHHHhcCCHHHHHHHHhhCCC--C--Ce----ehHHHHHHHH
Q 042265 159 FHRLRDAQELFDEILY---R-D---V-----VSCNTLIDGYVKAGDLAHARQLFDRMPF--R--DA----VSWGTLVAGY 218 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~---~-~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~ 218 (490)
.|++++|...++.... . + . .....+...+...|++++|...+++... + +. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 7888887777765521 1 1 1 1112223445678888888887776432 1 11 2345666677
Q ss_pred HhcCChhHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC---ChhhHHHHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDI---KPD--NIALVSALSACARLGELEQGKNIHRYIELN----QIRV---DSFLSTGLVD 286 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~ 286 (490)
...|++++|...+.+.....- .+. ...+..+...+...|+++.|...+++.... +... ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 888999999988888764211 111 234455666778889999998888776553 2111 1233445566
Q ss_pred HHHhcCCHHHHHHHHhccCC------C--CeehHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQE------K--NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR--IKPDGV--TI--LGALV 352 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~--~~--~~l~~ 352 (490)
.+...|++++|...+++... + ....+..+...+...|++++|...+.+..... ...... .. ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 77778999999888876542 1 12234445567778899999999888875421 111110 00 11123
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCch----HHHHHHhhhhhcCCHHHHHHHHhhCCC----CC----CHHHHHHHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKELK----HYGCMADLLGRAGLIEEALEMIKKMPM----GG----DVFVWSGLLG 420 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~ 420 (490)
.+...|+.+.|...+...... . ..... .+..+..++...|++++|...+++... .+ ...+...+..
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 344578999999888776542 1 11111 134567778889999999998887542 11 2345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
++...|+.++|...+.++++....
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCc
Confidence 789999999999999999994443
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=2.1e-07 Score=78.29 Aligned_cols=118 Identities=7% Similarity=0.082 Sum_probs=68.4
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC-RIHGN--VEIA 431 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~-~~~~~--~~~a 431 (490)
.++.+++...++...+ ..+.+...|..+...|...|++++|...+++.. ..| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4444555555555554 344555566666666666666666666665533 223 555555555542 44454 3666
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 432 EAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.++++++++.+|+++.++..++..+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666666666666666666666666666666666665543
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=4.5e-07 Score=92.04 Aligned_cols=202 Identities=20% Similarity=0.110 Sum_probs=150.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC--------CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK--------NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVT 346 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 346 (490)
|.....|...|......++.++|+++.+++... -...|-++++.....|.-+...++|+++.+.. -.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 455566777777777888888888888776642 23467777777777777777788888887641 12345
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG---DVFVWSGLLGGC 422 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 422 (490)
|..|...|.+.+..++|.++++.|.+.++ .....|..++..+.+.++-++|.+++++.. .-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67777778888888888888888888544 566678888888888888888888887632 223 555666666677
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKN 480 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 480 (490)
.+.|+.+++..+|+..+.-.|.....|+.+++.-.+.|+.+.++.+|++....++.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 7888888888888888888888888888888888888888888888888887776653
No 107
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=2.1e-06 Score=77.71 Aligned_cols=225 Identities=11% Similarity=0.047 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDN-IALVSALSACARLG-ELEQGKNIHRYIELNQIRVDSFLSTGLVDFY 288 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 288 (490)
+..+-..+...++.++|+.++.++++. .|+. ..|+....++...| ++++++..++.+.+.. +.+..+|+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~----- 111 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHH----- 111 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHH-----
Confidence 334444445555666666666666553 2322 23333333333444 3455555555555443 233333333
Q ss_pred HhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 042265 289 AKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLG--RLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
....+.+.|+. ++++.+++++.+...+ |..+|.....++...|+++++++.
T Consensus 112 --------------------------R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 112 --------------------------RRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred --------------------------HHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22222233321 3455555555554322 445555555555555666666666
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhc---CCH----HHHHHHHhh-CCCCC-CHHHHHHHHHHHHhc----CCHHHHHH
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRA---GLI----EEALEMIKK-MPMGG-DVFVWSGLLGGCRIH----GNVEIAEA 433 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~----~~~~~a~~ 433 (490)
++++.+ ..+.+...|+.....+.+. |+. ++.+.+..+ +...| +...|+.+...+... ++..+|.+
T Consensus 165 ~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 666665 2333444444444433332 222 344555433 33444 666676666666652 34456777
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcC------------------ChHHHHHHHHHH
Q 042265 434 AAEHVMKLKPEDGGVYKVLADVYANAD------------------RWEDVVKIRRSL 472 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 472 (490)
.+.++.+..|+++.++..|+..|+... ..++|.++++.+
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 788777777887778888888887532 246788888887
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=2.4e-06 Score=87.02 Aligned_cols=233 Identities=13% Similarity=0.092 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC--------CchhHHHHHHHHHhcCCHHHHHHHH
Q 042265 129 LAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR--------DVVSCNTLIDGYVKAGDLAHARQLF 200 (490)
Q Consensus 129 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~ 200 (490)
.+.+ |+.+.... |.+...|-..|......+++++|.++.++.+.. -...|.++++.-...|.-+...++|
T Consensus 1443 saeD-ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAED-FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHH-HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 4444 34444443 666778999999999999999999999998543 3357888888888888889999999
Q ss_pred hhCCCC-C-eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC
Q 042265 201 DRMPFR-D-AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQI-RVD 277 (490)
Q Consensus 201 ~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 277 (490)
+++.+- | ...|..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++.+.-. ...
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 997754 3 457889999999999999999999999886 235667888889999999999999999999887621 224
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG--VTILGALV 352 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~ 352 (490)
.....-.++.-.+.|+.+.++.+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-. ..|...+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 566677777888999999999999987753 4568999999999999999999999999998877654 23444444
Q ss_pred HhhccCcHHHHH
Q 042265 353 GCSHAGLVDEAR 364 (490)
Q Consensus 353 ~~~~~g~~~~a~ 364 (490)
.--..|+-..++
T Consensus 1680 yEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVE 1691 (1710)
T ss_pred HHHhcCchhhHH
Confidence 333445544333
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=3.9e-07 Score=72.53 Aligned_cols=122 Identities=9% Similarity=0.008 Sum_probs=86.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-C
Q 042265 330 VYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-M 408 (490)
Q Consensus 330 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 408 (490)
.++++..+. .|+. +..+...+...|++++|...|+.+.. -.+.+...+..+..++.+.|++++|...|++.. .
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555443 3432 44456666778888888888888776 455567777777778888888888888887754 2
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 409 GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 409 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
.| ++..+..+..++...|++++|+..++++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 77777888888888888888888888888888888777766665554
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.6e-06 Score=80.60 Aligned_cols=250 Identities=13% Similarity=0.036 Sum_probs=181.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
..-+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345677888889988888888764 3356688888888888888888888888888876 67788888888889988888
Q ss_pred HHHHHHHhccCCCC-eehHHHHH---------HHHHHcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHhhccCcHHHH
Q 042265 295 NTAIEIFESSQEKN-LFTWNAML---------VGLAMHGLGRLSLVYFSR-MIEARIKPDGVTILGALVGCSHAGLVDEA 363 (490)
Q Consensus 295 ~~A~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~A~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 363 (490)
..|.+.+++-.... ...|.... ..+..........++|-+ ....+..+|+.....|.-.|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888887542210 00000000 011111122333444444 44555557777777887788889999999
Q ss_pred HHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 364 RKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
...|+.+.. --|-|..+||.|.-.++...+.++|+..|++.. .+| -+.....|.-+|...|.+++|...|-.++.+
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999997 556688899999999999999999999998864 455 6677888999999999999999999999885
Q ss_pred CCCC-----C-----chHHHHHHHHHhcCChHHHHHH
Q 042265 442 KPED-----G-----GVYKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 442 ~p~~-----~-----~~~~~l~~~~~~~g~~~~A~~~ 468 (490)
.+.+ . .+|..|=.++.-.++.|-+.++
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 5441 1 3666666666667776644443
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=3.5e-07 Score=72.82 Aligned_cols=107 Identities=9% Similarity=-0.101 Sum_probs=91.5
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
.++++..+ ..|+ .+..+...+...|++++|...|+... ..| +...+..+..++...|++++|+..|+++++.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555554 2233 35567888899999999999999865 344 88999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 443 PEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
|+++.++..++.++...|++++|...+++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987654
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00024 Score=65.97 Aligned_cols=395 Identities=11% Similarity=0.085 Sum_probs=223.1
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 042265 73 YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
+-|+.+|+.||+-+..+ .++++.+.|+++... .+-....|..-|..-.+.++++..+.+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45899999999987766 999999999999864 34455678888999999999999999999988763 456666666
Q ss_pred HHHHHh-cCChHHHH----HHHHhccc------CCchhHHHHHHH---------HHhcCCHHHHHHHHhhCCCC------
Q 042265 153 MHVYCV-FHRLRDAQ----ELFDEILY------RDVVSCNTLIDG---------YVKAGDLAHARQLFDRMPFR------ 206 (490)
Q Consensus 153 i~~~~~-~g~~~~A~----~~~~~~~~------~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~------ 206 (490)
+.--.+ .|+...+. +.|+-... .+-..|+..+.. +....+++...+++.++...
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 553332 33333322 22222211 133456655554 34556778888888887632
Q ss_pred ----CeehHHHHHHHH-------HhcCChhHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHccCC
Q 042265 207 ----DAVSWGTLVAGY-------AQSDQCEEAIQLFCNMMD--LDIKPDNIA---------------LVSALSACARLGE 258 (490)
Q Consensus 207 ----~~~~~~~l~~~~-------~~~g~~~~A~~~~~~m~~--~~~~p~~~~---------------~~~l~~~~~~~~~ 258 (490)
|-..|..=|+.. -+...+..|.++++++.. .|..-...+ |..+|.-- +.+.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCC
Confidence 112222222211 123345566677766643 233211111 11111110 1110
Q ss_pred hH---------HHHHHHHHHHH-cCCCCChhhH-----HHHHHHHHhcCC-------HHHHHHHHhccCCC----CeehH
Q 042265 259 LE---------QGKNIHRYIEL-NQIRVDSFLS-----TGLVDFYAKCGY-------INTAIEIFESSQEK----NLFTW 312 (490)
Q Consensus 259 ~~---------~a~~~~~~~~~-~~~~~~~~~~-----~~l~~~~~~~~~-------~~~A~~~~~~~~~~----~~~~~ 312 (490)
+. ...-++++... .+..|+.... ...-+.+...|+ .+++..+++..... +...|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111111111 1222221110 011112222333 23333344333221 11222
Q ss_pred HHHHHHHHHc---CChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-CchHHHHHH
Q 042265 313 NAMLVGLAMH---GLGRLSLVYFSRMIEAR-IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSK-ELKHYGCMA 387 (490)
Q Consensus 313 ~~l~~~~~~~---~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 387 (490)
..+..---.. +..+.....++++...- ..| ..+|..++....+..-++.|..+|.++.+. +..+ ++.++++++
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALM 409 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHH
Confidence 2222111111 12445555666665532 333 346677777777778888888999888886 5555 666777777
Q ss_pred hhhhhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC-CCchHHHHHHHHHhcCCh
Q 042265 388 DLLGRAGLIEEALEMIKK-MPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL--KPE-DGGVYKVLADVYANADRW 462 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~ 462 (490)
.-|| .++.+-|.++|+- ++..| ++.-....+..+...++-..+..+|++++.. .|+ ...+|..++.--..-|+.
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 7664 5778888888886 44445 4444456677777888888888899988874 332 235788888888888998
Q ss_pred HHHHHHHHHHhcC
Q 042265 463 EDVVKIRRSLDAG 475 (490)
Q Consensus 463 ~~A~~~~~~m~~~ 475 (490)
..+.++-+++...
T Consensus 489 ~si~~lekR~~~a 501 (656)
T KOG1914|consen 489 NSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777654
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.68 E-value=2.4e-05 Score=77.37 Aligned_cols=422 Identities=14% Similarity=0.020 Sum_probs=246.4
Q ss_pred hHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCC-CCCCc
Q 042265 36 ILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVS-IPPDF 111 (490)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 111 (490)
..|+.|...|. ...+...|.+.|+..- ..+...+......|++..+++.|..+.-..-+.. ...-.
T Consensus 493 paf~~LG~iYr----------d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 493 PAFAFLGQIYR----------DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 36888888888 6668888999988654 4567788889999999999999998843332221 00011
Q ss_pred ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchh-HHH--HHHHHH
Q 042265 112 YSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVS-CNT--LIDGYV 188 (490)
Q Consensus 112 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~--l~~~~~ 188 (490)
..|....-.+...++...+..-|+...+.. |.|...|..++.+|.+.|++..|.++|.+...-++.. |.. .....+
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 123334444667788889999999988876 7788899999999999999999999998875543332 222 223356
Q ss_pred hcCCHHHHHHHHhhCCCC----------CeehHHHHHHHHHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHH
Q 042265 189 KAGDLAHARQLFDRMPFR----------DAVSWGTLVAGYAQSDQCEEAIQLFCNMMD-------LDIKPDNIALVSALS 251 (490)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~ 251 (490)
..|.+++|...+...... -..++-.+...+.-.|-..+|..++++-++ .....+...+-.+-.
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD 721 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Confidence 778888888887765421 122333333333333433344444333221 111111112211111
Q ss_pred HHHc---cC-Ch--HHHHHH-HHHHHHcCC--------------------CCChhhHHHHHHHHHh----c----CCHHH
Q 042265 252 ACAR---LG-EL--EQGKNI-HRYIELNQI--------------------RVDSFLSTGLVDFYAK----C----GYINT 296 (490)
Q Consensus 252 ~~~~---~~-~~--~~a~~~-~~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~----~~~~~ 296 (490)
+|.- .. ++ .....+ +.+....+. ..+...|..|+..|.+ . .+...
T Consensus 722 ac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 722 ACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 1110 00 00 000001 111111111 1123334344443333 1 12235
Q ss_pred HHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 297 AIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 297 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
|...+.+..+ .+...|+.|.-. ...|.+.-|...|-+-+... +-...+|..+...+.+..+++.|...|...+.
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS- 878 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS- 878 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh-
Confidence 5566655443 355667666544 55566766666665555432 22456677777777888899999999988886
Q ss_pred hCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh-----CCCC--CCHHHHHHHHHHHHhcCCHHHHH----------HHHH
Q 042265 374 YGVSKELKHYGCMADLLGRAGLIEEALEMIKK-----MPMG--GDVFVWSGLLGGCRIHGNVEIAE----------AAAE 436 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~--~~~~~~~~l~~~~~~~~~~~~a~----------~~~~ 436 (490)
-.|.+...|-.........|+.-++..+|.. +... ++..-|.....--..+|+.++-+ -.++
T Consensus 879 -LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 -LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred -cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 4555666665555555667888888887765 1111 13333333333344555555443 3444
Q ss_pred HHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 437 HVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 437 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
+.....|+...+|...+....+.+.+++|.+...+.
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445578888889999999999999988888877665
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=1.9e-06 Score=85.92 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=92.2
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHH
Q 042265 308 NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCM 386 (490)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 386 (490)
++..+..|.....+.|++++|+.+++...+. .|+ ......+...+.+.+++++|...+++... ..+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3556666777777777777777777777664 443 34455566667777777777777777776 455566666667
Q ss_pred HhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 387 ADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
..++.+.|++++|.++|+++. ..| +..++..+..++...|+.++|...|+++++...+....|+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 777777777777777777755 333 4667777777777777777777777777774444433443
No 115
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=0.00011 Score=68.13 Aligned_cols=374 Identities=14% Similarity=0.049 Sum_probs=238.3
Q ss_pred HHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 042265 84 RAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR 163 (490)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 163 (490)
.+.+..|+++.|+.+|.+..... ++|...|+.=..+++..|++++|.+=-.+-++.. |.-..-|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 45677899999999999998865 4577788888899999999999987766666654 445678999999999999999
Q ss_pred HHHHHHHhcccCC---chhHHHHHHHHHhcCCHHHHHHHHh------hCC-CC------CeehHHHHHHHHHhc------
Q 042265 164 DAQELFDEILYRD---VVSCNTLIDGYVKAGDLAHARQLFD------RMP-FR------DAVSWGTLVAGYAQS------ 221 (490)
Q Consensus 164 ~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~------~~~-~~------~~~~~~~l~~~~~~~------ 221 (490)
+|+..|.+-++.+ ...++-+..++.. +.. +.+.|. .+. .| ....|..++...-+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLE--DYA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhH--HHH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999886653 3455556655511 100 111111 110 00 112333333322211
Q ss_pred -CChhHHHHHHHHHHh--------C-------CCCC---------C-------------HHHHHHHHHHHHccCChHHHH
Q 042265 222 -DQCEEAIQLFCNMMD--------L-------DIKP---------D-------------NIALVSALSACARLGELEQGK 263 (490)
Q Consensus 222 -g~~~~A~~~~~~m~~--------~-------~~~p---------~-------------~~~~~~l~~~~~~~~~~~~a~ 263 (490)
.+.+...+..-.+.. . +..| . ..-...+.++..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 011111111111100 0 0111 0 112344556666667777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCe---e-------hHHHHHHHHHHcCChHHHHHHHH
Q 042265 264 NIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL---F-------TWNAMLVGLAMHGLGRLSLVYFS 333 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~A~~~~~ 333 (490)
+-+....... .+..-++....+|...|.+..+...-+...+... . .+..+..+|.+.++++.++..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 7777777664 5555666677777777777776665555443211 1 12223345666677777887777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc-hHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-
Q 042265 334 RMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKEL-KHYGCMADLLGRAGLIEEALEMIKKMP-MGG- 410 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~- 410 (490)
+.....-.|+. ..+....+++....+...- +.|.. .-...-...+.+.|++..|.+.+.++. ..|
T Consensus 323 kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPDL---------LSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 76554333322 1122334444444433322 12222 112223566788999999999998865 445
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
|...|.....+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++-.+..
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999876654
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1.8e-06 Score=82.37 Aligned_cols=212 Identities=13% Similarity=0.033 Sum_probs=141.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042265 212 GTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC 291 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (490)
..+...+...|-...|..++++.. .+..++.+|...|+.++|..+..+-.+. +|++..|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345666777777777777777653 3455667777777777777777766662 67777777777777666
Q ss_pred CCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 292 GYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 292 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
.-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.|....
T Consensus 471 s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 6677777777654432 11112222234677777777777665532 2234566666666667777777777777777
Q ss_pred HhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 372 SVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
. +.+.+...||.+..+|.+.|+..+|...+++..... +...|.+.+-...+.|.+++|++.+.++..
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6 566667777888888888888888877777754332 556666777777777778888777777766
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=4e-06 Score=70.62 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=117.0
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 285 VDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
+-.|...|+++.+....+.+..+. . .+...++.++++..+++..+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345777777777655543332221 0 1123566778888888877764 447788999999999999999999
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhh-hhcCC--HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLL-GRAGL--IEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVM 439 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 439 (490)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++.. ..| +...+..+...+.+.|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988 4566778888888864 67777 599999999865 344 88899999999999999999999999999
Q ss_pred hhCCCCCchH
Q 042265 440 KLKPEDGGVY 449 (490)
Q Consensus 440 ~~~p~~~~~~ 449 (490)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9888876443
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.63 E-value=1.2e-05 Score=79.53 Aligned_cols=372 Identities=14% Similarity=0.036 Sum_probs=216.9
Q ss_pred chhHHHHHHHhhhCCCCCC-cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 042265 92 PLNAVVLFSQMRTVSIPPD-FYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFD 170 (490)
Q Consensus 92 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 170 (490)
...|...|-+..+.. |+ ...|..|...|...-+...|.+.|+...+.+ +-+........+.|.+..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 445555554444432 22 2357777777777667778888888887765 5567777888888888888888888844
Q ss_pred hcccCC-----chhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042265 171 EILYRD-----VVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242 (490)
Q Consensus 171 ~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 242 (490)
...+.+ ...|....-.|.+.++...|..-|+....- |...|..++.+|...|++..|+++|.+... +.|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 443322 234445555677888888888888775532 667888899999999999999999988766 3454
Q ss_pred HH-HHHHHHHHHHccCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---------
Q 042265 243 NI-ALVSALSACARLGELEQGKNIHRYIELNQ------IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--------- 306 (490)
Q Consensus 243 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------- 306 (490)
.. .--......+..|.+.++...+....... ...-..++..+...+.-.|-..+|..++++..+
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 33 11222233467788888888777765431 111122333333333333333333333332211
Q ss_pred --CCeehHHHHHHHHH---HcC--ChH-HHHHH-HHHHHHCCCCC--------------------CHHHHHHHHHHhhc-
Q 042265 307 --KNLFTWNAMLVGLA---MHG--LGR-LSLVY-FSRMIEARIKP--------------------DGVTILGALVGCSH- 356 (490)
Q Consensus 307 --~~~~~~~~l~~~~~---~~~--~~~-~A~~~-~~~m~~~~~~p--------------------~~~~~~~l~~~~~~- 356 (490)
.+...|-.+..+|. +.. -+. -...+ +.+....+.-| +..+|-.+...|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 12222222222211 000 000 00000 11111111111 12222222222211
Q ss_pred -------cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 042265 357 -------AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGN 427 (490)
Q Consensus 357 -------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 427 (490)
..+...|...+.+..+ -...+..+|+.|.-+ ...|.+.-|...|-+-. ..| ...+|..+...+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 1233466777777665 334455556655444 55577777777665432 333 77788888888889999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 428 VEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 428 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
++-|...+.++..++|.+...|...+......|+.-++..+|..
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999887777777777778888887777765
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=2.7e-06 Score=81.22 Aligned_cols=193 Identities=13% Similarity=0.085 Sum_probs=98.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC 354 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 354 (490)
+|-...-..+...+.+.|-...|..+|+++. .|.-.+.+|...|+..+|..+..+-.++ +|++..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 3444444556666666677777777666543 4555566666666666666666665552 55666666665554
Q ss_pred hccCcHHHHHHHHHHhHHhh--------------------------CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-
Q 042265 355 SHAGLVDEARKLFDEMESVY--------------------------GVSKELKHYGCMADLLGRAGLIEEALEMIKKMP- 407 (490)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 407 (490)
....-+++|.++.+.....- -.+....+|-.+.-+..+.++++.|.+.|....
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 44444555555544433210 112223333334444444445555544444422
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 408 MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 408 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
..| +...|+++..+|.+.++-.+|...++++++.+-.+..+|....-...+.|.+++|.+.+.++.+
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 222 4445555555555555555555555555554444444444444444455555555555554443
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2.4e-05 Score=65.82 Aligned_cols=226 Identities=12% Similarity=-0.012 Sum_probs=144.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH-HHHHHHHHHcCCCCChhhHHHHHHHH
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQG-KNIHRYIELNQIRVDSFLSTGLVDFY 288 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~ 288 (490)
.-.-+.++|...|.+.....-.. . |-.|....+..+.......++.+.- ..+.+.+.......+......-...|
T Consensus 43 ~d~y~~raylAlg~~~~~~~eI~---~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 43 LDVYMYRAYLALGQYQIVISEIK---E-GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred HHHHHHHHHHHcccccccccccc---c-ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 33344556666665543332211 1 1123333333333333333433332 33444444444344433444445567
Q ss_pred HhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCcHHHHH
Q 042265 289 AKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH----AGLVDEAR 364 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 364 (490)
+..|++++|++....... ....-.=...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.+..|.
T Consensus 119 ~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred hcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHH
Confidence 888888888888877332 222323344566778889999999999874 256777777777643 45688899
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG--GDVFVWSGLLGGCRIHGNV-EIAEAAAEHVMKL 441 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 441 (490)
-+|+++.+ ..+|++.+.+....+....|++++|..++++...+ .++.++..++..-...|.. +-..+.+.+....
T Consensus 194 yifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 194 YIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999987 67888888888888888999999999999886533 3888888888777777755 4456777777778
Q ss_pred CCCCC
Q 042265 442 KPEDG 446 (490)
Q Consensus 442 ~p~~~ 446 (490)
.|.++
T Consensus 272 ~p~h~ 276 (299)
T KOG3081|consen 272 HPEHP 276 (299)
T ss_pred CCcch
Confidence 88776
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=5.1e-06 Score=69.86 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=75.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL 395 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (490)
-..+...|+-+....+........ .-+.......+....+.|++..|...+++... .-++|...|+.+.-+|.+.|+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 334444444444444444332211 11222333344445555555555555555555 455555555555555555555
Q ss_pred HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHH
Q 042265 396 IEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 396 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (490)
+++|..-+.+.. ..| ++...+.+...+.-.|+.+.|..++.......+.+..+-..|+.+....|++++|..+
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 555555554432 122 4555555555555555555555555555555555555555555555555555555544
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=7.7e-06 Score=82.54 Aligned_cols=233 Identities=10% Similarity=0.045 Sum_probs=127.1
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042265 176 DVVSCNTLIDGYVKAGDLAHARQLFDRMPF--R-DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSA 252 (490)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 252 (490)
+...+..|+..+...+++++|.++.+.... | ....|-.+...+...++.+++..+ .+ +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhh
Confidence 344555566666666666666666554332 1 233344444445555554443333 11 111
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHH
Q 042265 253 CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSL 329 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 329 (490)
.....++..+..++..+... ..+...+..+..+|-+.|+.++|...++++.+ .|+.+.|.+...|... +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22222232223333333332 22333555566666666666666666666554 2455566666666666 666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC
Q 042265 330 VYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG 409 (490)
Q Consensus 330 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (490)
+++.+.+.. +...+++..+.++|.++.. ..+.+...+-.+..... ..+...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~------------~~~~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL------------GHREFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH------------hhhccc
Confidence 666555432 3344566666666666665 33333333222222111 111111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 410 GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 410 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
.-+.++..+-..|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 145566677778888999999999999999999999989999988887
No 123
>PLN02789 farnesyltranstransferase
Probab=98.57 E-value=6.7e-05 Score=68.01 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042265 179 SCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSD-QCEEAIQLFCNMMDLDIKPDNIALVSALSACA 254 (490)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 254 (490)
++..+-..+...+..++|+.+.+++... +..+|+....++...| ++++++..++++.+... -+..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHH
Confidence 4555666677888999999999987644 4456666666777777 67999999999988653 34445665555555
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHH
Q 042265 255 RLGEL--EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGL 319 (490)
Q Consensus 255 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 319 (490)
+.|+. +++..+++.+.+.. +-+..+|....-++...|+++++++.++++.+. |..+|+.....+
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 55552 56677777777665 556666666666666666666666666665542 344555544443
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.4e-07 Score=53.50 Aligned_cols=32 Identities=44% Similarity=0.678 Sum_probs=22.2
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 042265 141 GFICDVFVLNSLMHVYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 141 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 172 (490)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777766665
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.8e-07 Score=53.03 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=16.7
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKM 406 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (490)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=1.9e-05 Score=66.52 Aligned_cols=150 Identities=15% Similarity=0.078 Sum_probs=76.9
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
+-..+...|+-+....+....... .+-|....+..+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 344444455555544444443221 12222333345555555555555555555555543 5555555555555555555
Q ss_pred hHHHHHHHHhccc---CCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChhHHHHHHHH
Q 042265 162 LRDAQELFDEILY---RDVVSCNTLIDGYVKAGDLAHARQLFDRMP---FRDAVSWGTLVAGYAQSDQCEEAIQLFCN 233 (490)
Q Consensus 162 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (490)
++.|..-|.+..+ .++...+.+.-.+.-.||++.|..++.... ..|...-..+.......|++++|.++...
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 5555555555422 244455555555555555655555554432 12455555566666666666666655443
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=1.4e-05 Score=70.05 Aligned_cols=179 Identities=12% Similarity=-0.067 Sum_probs=83.1
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChh---h
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD-N---IALVSALSACARLGELEQGKNIHRYIELNQIRVDSF---L 280 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 280 (490)
...+..++..+...|++++|...|+++.... |+ . ..+..+..++...|++++|...++.+.+.. +.+.. +
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 3445555555566666666666666555432 21 1 234445555556666666666666665543 11111 2
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHhccCCCCee---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 042265 281 STGLVDFYAKC--------GYINTAIEIFESSQEKNLF---TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG 349 (490)
Q Consensus 281 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 349 (490)
+..+..++.+. |++++|.+.|+++.+.++. .+..+... ..+... . ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHHH
Confidence 33333334332 4455555555554432111 11111000 000000 0 000112
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
+...+.+.|++++|...++.+.+.+...| ....+..++.++...|++++|..+++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445566666666666666665322112 23455666666666666666666665543
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=1.6e-06 Score=68.66 Aligned_cols=98 Identities=18% Similarity=0.078 Sum_probs=56.0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHh
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRI 424 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~ 424 (490)
...+...+...|++++|.+.++.+.. ..+.+...+..+...+...|++++|..++++.. ..| +...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44444555566666666666666655 234455555556666666666666666665542 222 45555555556666
Q ss_pred cCCHHHHHHHHHHHHhhCCCCC
Q 042265 425 HGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 425 ~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.|++++|...++++++..|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENP 119 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccc
Confidence 6666666666666666666554
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=2.6e-05 Score=77.99 Aligned_cols=130 Identities=11% Similarity=0.066 Sum_probs=83.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--K-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGAL 351 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 351 (490)
+.+...+..|.......|.+++|..+++...+ | +......++..+.+.+++++|+..+++....... +......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 45566666777777777777777777776654 3 3345556666677777777777777777665321 334455555
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 352 VGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
.++.+.|++++|..+|+++.. ..+.+..++..+...+...|+.++|...|++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566667777777777777765 333445666666777777777777777776643
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=6.2e-05 Score=63.47 Aligned_cols=240 Identities=10% Similarity=0.048 Sum_probs=128.1
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC-C-CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP-Y-PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPD 110 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 110 (490)
|+...++.-=..|. |++..++..-.... . .+...-.-+-++|...|++.....-... .. .|.
T Consensus 8 ~~d~LF~iRn~fY~------------Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~---~~-~~~ 71 (299)
T KOG3081|consen 8 PEDELFNIRNYFYL------------GNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKE---GK-ATP 71 (299)
T ss_pred cchhHHHHHHHHHh------------hHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccc---cc-CCh
Confidence 55566665555555 88887777665433 2 2233333455677777776644332211 11 222
Q ss_pred cccHHHHHHHHhccCCcHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHh
Q 042265 111 FYSFPFLLRACSQLCSHSL-AQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVK 189 (490)
Q Consensus 111 ~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 189 (490)
......+-.....-++.+. ...+.+.+.......+......-...|++.|++++|++..+.. -+......=...+.+
T Consensus 72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLK 149 (299)
T ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHH
Confidence 2222222222222333333 2334444444433333333444445677788888888777763 233333333445566
Q ss_pred cCCHHHHHHHHhhCCCC-CeehHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 042265 190 AGDLAHARQLFDRMPFR-DAVSWGTLVAGYAQ----SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKN 264 (490)
Q Consensus 190 ~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 264 (490)
..+++.|.+.+++|..- +..+.+.|..++.+ .+...+|.-+|++|-++ .+|+..+.+....++...+++++|..
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 66777777777777655 33445545555543 34566677777776553 45666666666667777777777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 265 IHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
+++...... ..++.+...++.+-...|
T Consensus 229 lL~eaL~kd-~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 229 LLEEALDKD-AKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHhC
Confidence 777666654 334444444443333333
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=6e-05 Score=76.29 Aligned_cols=236 Identities=8% Similarity=-0.033 Sum_probs=107.0
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 042265 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS-FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
.+...|..|+..+...+++++|.++.+...+. .|+... |-.+...+.+.++.+.+..+ .+... .+...-+..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~v 102 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIV 102 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHH
Confidence 45566677777777777777777777755553 344332 22222344444554444333 22211 1111111111
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHH
Q 042265 153 MHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQ 229 (490)
Q Consensus 153 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 229 (490)
-..|...+++- .+...+-.+..+|-+.|+.++|..+++++.+- |+.+.|.+...|... +.++|.+
T Consensus 103 e~~~~~i~~~~-----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 103 EHICDKILLYG-----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHHHHHhhh-----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 11111111110 12223444455555555555555555554322 444555555555555 5555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCe
Q 042265 230 LFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL 309 (490)
Q Consensus 230 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 309 (490)
++.+.+.. +...+++..+..+|.++.... +.+...+..+.+.....-.. ..-+
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~-----------~~~~ 223 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREF-----------TRLV 223 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhcc-----------chhH
Confidence 55444332 333344555555555555443 22222222222211111000 0112
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 355 (490)
.++-.+-..|-..++++++..+++...+.... |.....-++.+|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 23344445666777788888888888775433 4455555555554
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.44 E-value=4.7e-06 Score=76.91 Aligned_cols=123 Identities=17% Similarity=0.090 Sum_probs=97.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCR 423 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 423 (490)
....++..+...++++.|..+++++.+. . |+ ....+++.+...++-.+|.+++++.. ..| +...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~-~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER-D--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc-C--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566666677888888888888774 1 33 44557777777788888888887754 334 7777777778899
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888764
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=0.00013 Score=67.07 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=52.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042265 218 YAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTA 297 (490)
Q Consensus 218 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 297 (490)
+...|++++|+..++.++..- +-|..........+...++.++|.+.++.+.... |........+.++|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHH
Confidence 334455555555555544431 2222333333444455555555555555555442 22234444455555555555555
Q ss_pred HHHHhccCC---CCeehHHHHHHHHHHcCChHHHHH
Q 042265 298 IEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 298 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
+..++.... .|+..|..|.++|...|+..++..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 555554432 244455555555555555554443
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=8.9e-05 Score=62.06 Aligned_cols=127 Identities=19% Similarity=0.204 Sum_probs=84.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHH
Q 042265 321 MHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEAL 400 (490)
Q Consensus 321 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (490)
..|++++|+++|+.+.+.+ +.|..++..-+...-..|+.-+|++-+....+ .+..|...|..+...|...|++++|.
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 4566777777777776654 23445555545555556666677777777777 56777788888888888888888888
Q ss_pred HHHhhCC-CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCchHH
Q 042265 401 EMIKKMP-MGG-DVFVWSGLLGGCRIHG---NVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 401 ~~~~~~~-~~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
-.++++. ..| ++..+..+...+.-.| +.+.+.++|.+++++.|.+...+.
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 8887754 445 5555666666543333 667788888888888885544444
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.41 E-value=9.6e-06 Score=63.51 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=82.2
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
..-.+...+...|++++|.++|+-+. ..| +..-|..|..++...|++++|+..|.++..++|+++..+..++.++...
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 34456666778999999999998754 333 8888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcC
Q 042265 460 DRWEDVVKIRRSLDAG 475 (490)
Q Consensus 460 g~~~~A~~~~~~m~~~ 475 (490)
|+.+.|.+.|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988765
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=5.8e-05 Score=69.24 Aligned_cols=115 Identities=23% Similarity=0.205 Sum_probs=71.9
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
..|+++.|+..++.+.. ..+.|+.......+.+.+.++.++|.+.++++. ..| ....+-.+..++.+.|++++|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 45666666666666665 445555555566666666677777766666644 334 35555566666666777777777
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 434 AAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
++++...-+|+++..|..|+.+|...|+..+|.....+.
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 777766666666666666666666666655555544443
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=1.8e-05 Score=62.62 Aligned_cols=98 Identities=21% Similarity=0.202 Sum_probs=83.8
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
+......+...+...|++++|.+.++.+.. .| +...+..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 445566677888899999999999988643 34 7788888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhcCC
Q 042265 457 ANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~~ 476 (490)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999998887654
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=2.5e-05 Score=72.17 Aligned_cols=124 Identities=17% Similarity=0.101 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 042265 180 CNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGEL 259 (490)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 259 (490)
-..++..+...++++.|.++|+++.+.++.....+++.+...++..+|.+++.+.++.. +-+...+..-...+.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34456666777888888888888888888888888888888888899999999888653 34566666677778889999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC
Q 042265 260 EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ 305 (490)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 305 (490)
+.|..+.+++.+.. |.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999998875 6677789999999999999999998888776
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=7e-05 Score=62.66 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=124.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG-ALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
|..++-+....|+.+.|..+++++...- |.+.-... -..-+...|++++|.++|+.+.+ ..+.|..++-.-+-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHHH
Confidence 3444555667788899999999988763 44332222 22234567999999999999998 5577777887777777
Q ss_pred hhcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC---ChHHH
Q 042265 391 GRAGLIEEALEMIKKMPMG--GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD---RWEDV 465 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 465 (490)
-..|+.-+|++-+.+..+. .|...|..+...|...|++++|.-.+++++-..|.++-.+..++..+.-.| ++.-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7888888888877765432 399999999999999999999999999999999999988889999877655 46778
Q ss_pred HHHHHHHhcCC
Q 042265 466 VKIRRSLDAGK 476 (490)
Q Consensus 466 ~~~~~~m~~~~ 476 (490)
.++|.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 88888776554
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.5e-06 Score=50.10 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF 111 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 111 (490)
.+||.+|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.24 E-value=0.0069 Score=60.14 Aligned_cols=406 Identities=15% Similarity=0.116 Sum_probs=213.2
Q ss_pred CCChhHHHHhhccCC--CCCcccHHHHHHH--HHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 58 TDPLSYALSIFNNIP--YPSTFSYNTIIRA--HTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 58 ~g~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
.+++..|++..+.+. .||. .|..++.+ +.|.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 456677777666653 3443 34445554 45778888888888877665433 667788888888888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHH----HHHHHHhcccCCchhHHHHHHHHHhc-CC---------HHHHHHH
Q 042265 134 HSQVLKLGFICDVFVLNSLMHVYCVFHRLRD----AQELFDEILYRDVVSCNTLIDGYVKA-GD---------LAHARQL 199 (490)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~~~ 199 (490)
|++..+. .|+......+..+|.+.+++.+ |++++....+.--..|+ +++..... .. ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHH
Confidence 8888775 4667777777788888777654 55555544444333443 33333221 11 2334555
Q ss_pred HhhCCCCC--ee---hHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 042265 200 FDRMPFRD--AV---SWGTLVAGYAQSDQCEEAIQLFC-NMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQ 273 (490)
Q Consensus 200 ~~~~~~~~--~~---~~~~l~~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 273 (490)
++.+.+.+ .. -...-...+-..|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++..++...+
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55554433 11 11122233456778888888883 33333333344444566677778888888888888888776
Q ss_pred CCCChhhHHHHHHHHHh----------------cCCHHHHHHHHhccCCC-CeehHHHHHHHHH---HcCChHHHHHHHH
Q 042265 274 IRVDSFLSTGLVDFYAK----------------CGYINTAIEIFESSQEK-NLFTWNAMLVGLA---MHGLGRLSLVYFS 333 (490)
Q Consensus 274 ~~~~~~~~~~l~~~~~~----------------~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~A~~~~~ 333 (490)
+.| |...++.+.+ .+..+...+...+.... .-..|-+-+.+.. .-|+.+++...|-
T Consensus 257 -~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 257 -NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred -Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 333 3333332211 12222333332222221 1223333333333 3466666554432
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCch-------HHHHHHhhhhhcCCH-----HHHHH
Q 042265 334 RMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELK-------HYGCMADLLGRAGLI-----EEALE 401 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~-----~~A~~ 401 (490)
+- -|-.| .+..=+..|...=..++-..++...... .++.. .+.+.+..-.-.|.+ +.-..
T Consensus 333 ~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 333 KK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 21 12111 1111111111111122222222222210 01100 011111111111211 11111
Q ss_pred HH-------hhCCCC-----C------C---HHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 402 MI-------KKMPMG-----G------D---VFVWSGLLGGCRIHGNV---EIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 402 ~~-------~~~~~~-----~------~---~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
++ +.-... | + ..+.+.++..+.+.++. -+|+-+++..+...|.|...-..++++|+
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~ 484 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYS 484 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 11 111000 1 1 12455666777777654 56788888888889988877788899999
Q ss_pred hcCChHHHHHHHHHHhcCCCCCC
Q 042265 458 NADRWEDVVKIRRSLDAGKIKKN 480 (490)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~~~~~~ 480 (490)
-.|-...|.++++.+.-+.|..+
T Consensus 485 ~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 485 YLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HhcCChhHHHHHHhcchHHhhhc
Confidence 99999999999988866665544
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=3.8e-05 Score=61.37 Aligned_cols=121 Identities=15% Similarity=0.068 Sum_probs=68.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC---chHHHHHHhhhhhcCCHHHHHHHHhhCCCC-CCH----HHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKE---LKHYGCMADLLGRAGLIEEALEMIKKMPMG-GDV----FVWSGL 418 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l 418 (490)
|..++..+ ..++...+...++.+.+. .+.+ ....-.+...+...|++++|...|+.+... ++. .....+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33333433 356666666666666663 2222 222333455666667777777777665432 222 233445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 419 LGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
...+...|++++|+..++... ..+..+..+...+.+|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566667777777777775532 2222334566677777777777777777765
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.21 E-value=0.008 Score=59.73 Aligned_cols=387 Identities=11% Similarity=0.056 Sum_probs=220.8
Q ss_pred HHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc
Q 042265 37 LTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS 113 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 113 (490)
.+...+..+... |.|..++|..+++... ..|..+...+-..|...++.++|..+|++..+. -|+..-
T Consensus 43 ~~a~vLkaLsl~--------r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eel 112 (932)
T KOG2053|consen 43 LYAKVLKALSLF--------RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEEL 112 (932)
T ss_pred HHHHHHHHHHHH--------HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHH
Confidence 344555555533 8899999999998764 347778889999999999999999999999876 477777
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHHhcccCC-c-h---
Q 042265 114 FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR----------LRDAQELFDEILYRD-V-V--- 178 (490)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~-~-~--- 178 (490)
...+..+|.+.+++.+-.++--++-+ .++.++..+-.+++...+.-. ..-|.+.++.+.+.+ . .
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a 191 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA 191 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHH
Confidence 88888899999888776666555554 356677777777777665321 234555666665443 1 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhh-----CCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH----H
Q 042265 179 SCNTLIDGYVKAGDLAHARQLFDR-----MPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVS----A 249 (490)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~----l 249 (490)
-.......+...|++++|.+++.. ....+...-+--+..+...++|.+..++-.++...|.. |-.+|.- +
T Consensus 192 E~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-dy~~~~~sv~kl 270 (932)
T KOG2053|consen 192 EIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-DYKIYTDSVFKL 270 (932)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-chHHHHHHHHHH
Confidence 112223445678899999999832 22224445556677788889999999998888887622 2112111 1
Q ss_pred HHH---------HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCCHHHHHHHH-hccCC----------
Q 042265 250 LSA---------CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYA---KCGYINTAIEIF-ESSQE---------- 306 (490)
Q Consensus 250 ~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~-~~~~~---------- 306 (490)
+.. ....+..+...+...+..... ....|-+-+.++. .-|+.+++.-.| ++.-.
T Consensus 271 Le~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~ 347 (932)
T KOG2053|consen 271 LELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNH 347 (932)
T ss_pred HHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHH
Confidence 111 111122233333222222221 1112222222222 335555544322 22211
Q ss_pred --------------------CCeeh--------HHHHHHHHHHcC-----ChHHHHHHHHHHH---HCC------CCCCH
Q 042265 307 --------------------KNLFT--------WNAMLVGLAMHG-----LGRLSLVYFSRMI---EAR------IKPDG 344 (490)
Q Consensus 307 --------------------~~~~~--------~~~l~~~~~~~~-----~~~~A~~~~~~m~---~~~------~~p~~ 344 (490)
.+..+ +...+..-...| ..+....++++.. ++| +-|+.
T Consensus 348 yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE 427 (932)
T KOG2053|consen 348 YLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTE 427 (932)
T ss_pred hhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccc
Confidence 01111 111111111122 1222333333322 222 33443
Q ss_pred H---------HHHHHHHHhhccCcHH---HHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-C
Q 042265 345 V---------TILGALVGCSHAGLVD---EARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-D 411 (490)
Q Consensus 345 ~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 411 (490)
. +.+.++..+.+.++.. +|+-+++.... ..+.|..+--.+++.|+-.|-+..|.++++.+..+. .
T Consensus 428 ~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 428 YSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 3 3356677788877765 45555555544 334455555678999999999999999999876543 1
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 042265 412 VFVWSG-LLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 412 ~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
..|... +...+...|++..+...+....+
T Consensus 506 ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 506 TDTLGHLIFRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred hccchHHHHHHHHhcccchhHHHHHHHHHH
Confidence 112222 23335566777777777777666
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=0.00013 Score=58.35 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC--chHHHHHH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD--GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE--LKHYGCMA 387 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~ 387 (490)
|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+... ...+. ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33444444 47788888888888877532211 123333456677889999999999988875 32222 12344567
Q ss_pred hhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 388 DLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
..+...|++++|+..++.....+ .+..+...+..+...|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888899999999998765544 5566777778889999999999988875
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=2.6e-06 Score=48.67 Aligned_cols=33 Identities=30% Similarity=0.578 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCC
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPP 109 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 109 (490)
.+||.++.++++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777666
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.16 E-value=6.9e-06 Score=56.08 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-ChHHHHHHHHHHhc
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD-RWEDVVKIRRSLDA 474 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 474 (490)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999998765
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=6.5e-06 Score=47.35 Aligned_cols=33 Identities=36% Similarity=0.758 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 242 (490)
+||.++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=6.4e-06 Score=47.02 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=26.2
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKP 241 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 241 (490)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888877776
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=3.7e-05 Score=56.18 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=75.3
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 383 YGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
+..+...+...|++++|...+++.. ..| +...+..+...+...+++++|.+.++++.+..|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456667777888888888887754 233 45677778888888899999999999999988888888889999999999
Q ss_pred ChHHHHHHHHHHhcC
Q 042265 461 RWEDVVKIRRSLDAG 475 (490)
Q Consensus 461 ~~~~A~~~~~~m~~~ 475 (490)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998887654
No 150
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=0.012 Score=56.77 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---hCCCCCchHHHHHHHHH
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMK---LKPEDGGVYKVLADVYA 457 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~ 457 (490)
.|..--...|..+.|.+..-.+.. .-|+ ..+|..++-+-+
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP-~eiySllALaac 1068 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPP-AEIYSLLALAAC 1068 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCH-HHHHHHHHHHHh
Confidence 333334556777777665444433 3332 235555544433
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.06 E-value=5.5e-05 Score=58.20 Aligned_cols=100 Identities=17% Similarity=0.055 Sum_probs=46.8
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC----CHHHHHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG----DVFVWSGLLG 420 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~ 420 (490)
+..+...+.+.|++++|.+.+..+.+.+...+ ....+..+..++.+.|++++|...++.+.. .| ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555566666666555554211101 122333445555555555555555554321 11 1334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
++...|+.++|...++++++..|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 55555555555555555555555444
No 152
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.06 E-value=0.0095 Score=54.65 Aligned_cols=441 Identities=11% Similarity=0.068 Sum_probs=222.7
Q ss_pred HHHHhhchhHHHHHHHHHHHhCCCCCCC----chhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC--CCcccH
Q 042265 6 FIKRCKTIKQIHQIHAHFLTKGLLFLSP----CHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY--PSTFSY 79 (490)
Q Consensus 6 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 79 (490)
.|...+.++.++.|+..+.... ..+| -....+.++++|- .++++.....+....+ | ...|
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-----------l~nld~Me~~l~~l~~~~~-~s~~ 80 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-----------LNNLDLMEKQLMELRQQFG-KSAY 80 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-----------HhhHHHHHHHHHHHHHhcC-CchH
Confidence 3445566777777777775442 2001 1445677888888 6667766666655442 3 3455
Q ss_pred HHHHHHH--HcCCCchhHHHHHHHhhhC--CCCC------------CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCC
Q 042265 80 NTIIRAH--TLFSSPLNAVVLFSQMRTV--SIPP------------DFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFI 143 (490)
Q Consensus 80 ~~li~~~--~~~g~~~~A~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 143 (490)
-.+..++ -+.+++.+|++.+...... +-.| |-..=+..+.++...|++.+++.+++++...=++
T Consensus 81 l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 81 LPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 5555543 4678888888888776654 2222 1111234556667778888888888877664433
Q ss_pred ----CchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHH
Q 042265 144 ----CDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYA 219 (490)
Q Consensus 144 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 219 (490)
.+..+|+.++-.+.+.=-.+ +-+.+...=...|-.++..|.+.=..-++. -+++. .|.......++....
T Consensus 161 rE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~-~Y~k~-~peeeL~s~imqhlf 234 (549)
T PF07079_consen 161 RECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQR-PYEKF-IPEEELFSTIMQHLF 234 (549)
T ss_pred hhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhhc-hHHhh-CcHHHHHHHHHHHHH
Confidence 67778877666555421111 111111111122333444443221111100 00000 011111222222221
Q ss_pred hc--CChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcC
Q 042265 220 QS--DQCEEAIQLFCNMMDLDIKPDNIA-LVSALSACARLGELEQGKNIHRYIELNQIRV----DSFLSTGLVDFYAKCG 292 (490)
Q Consensus 220 ~~--g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~ 292 (490)
-. .+..--++++....+.-+.|+... ...+...+.+ +.+++..+.+.+....+.+ -..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112222333333344444555332 2233333333 4455555544444332111 1345666666677777
Q ss_pred CHHHHHHHHhccC--CCCeehH-------HHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH---HHhhc
Q 042265 293 YINTAIEIFESSQ--EKNLFTW-------NAMLVGLAM----HGLGRLSLVYFSRMIEARIKPDGVTILGAL---VGCSH 356 (490)
Q Consensus 293 ~~~~A~~~~~~~~--~~~~~~~-------~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~---~~~~~ 356 (490)
+...|...+.-+. +|+...- ..+-+..+. .-+...=+.+|+.....++.- ......++ .-+.+
T Consensus 313 ~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWE 391 (549)
T ss_pred hHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHh
Confidence 7777776665433 2322111 111111111 111222334455554443221 11122222 22455
Q ss_pred cCc-HHHHHHHHHHhHHhhCCCCCchHHHHHH----hhhhhc---CCHHHHHH---HHhhCCCCC----CHHHHHHHHHH
Q 042265 357 AGL-VDEARKLFDEMESVYGVSKELKHYGCMA----DLLGRA---GLIEEALE---MIKKMPMGG----DVFVWSGLLGG 421 (490)
Q Consensus 357 ~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~---~~~~~~~~~----~~~~~~~l~~~ 421 (490)
.|. -++|.++++.+.+- -+-|...-|.+. ..|..+ ..+..-.. ..++....| +...-|.+..+
T Consensus 392 ~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred cCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 555 77888888888762 233433333222 222221 11222222 222222222 66677777777
Q ss_pred --HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 422 --CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 422 --~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
+..+|++.++.-.-..+.++.| ++.+|..+|-++....+|++|+.++..+
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 6689999999999999999999 7789999999999999999999999865
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.03 E-value=1.4e-05 Score=53.83 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+...+...|++++|+..|+++++..|.++.++..++.++.+.|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566788899999999999999988998889999999999999999999999888654
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=4.9e-05 Score=65.38 Aligned_cols=106 Identities=15% Similarity=0.048 Sum_probs=79.6
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 431 (490)
..+.+++++|...|.++.+ -.+.|+..|..-..+|.+.|.++.|++-.+... ..| ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4567888888888888887 556677777777888888888888888777654 333 567888888888888888888
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 432 EAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
++.|+++++++|++......|-.+-.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 888888888888888555555555444443
No 155
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00012 Score=63.46 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=89.4
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCCchH
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH---GNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
..+-|...|..|...|...|+++.|..-|.+.. ..| ++..+..+..++..+ ....++..+++++++.+|.++.+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 456688889999999999999999999887743 333 777777777774432 355788999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCcee
Q 042265 450 KVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCS 484 (490)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 484 (490)
..|+..+...|++.+|...|+.|.+..-..+|..+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999999988766666544
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=6.5e-06 Score=58.75 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=42.0
Q ss_pred CCHHHHHHHHhhCCC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 394 GLIEEALEMIKKMPM-GG---DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 394 g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
|+++.|+.+++++.. .| +...+..+..++.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555555554331 11 233344456666666666666666666 5555555455555566666666666666666
Q ss_pred HH
Q 042265 470 RS 471 (490)
Q Consensus 470 ~~ 471 (490)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.00012 Score=56.18 Aligned_cols=96 Identities=16% Similarity=-0.008 Sum_probs=73.6
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHH
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMPM-GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED---GGVYKVL 452 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 452 (490)
.++..++..+.+.|++++|.+.|+++.. .| ....+..+...+.+.|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455677778888888888888887652 22 24566667888888888888888888888877765 4467788
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCC
Q 042265 453 ADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+.++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888888888888888888887764
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=6.1e-05 Score=69.96 Aligned_cols=106 Identities=16% Similarity=0.057 Sum_probs=89.1
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 042265 351 LVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNV 428 (490)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~ 428 (490)
...+...|++++|...|+++.+ ..+.+...|..+..+|...|++++|+..++++. ..| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4456678999999999999998 456677888889999999999999999998865 334 788899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 429 EIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 429 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
++|+..|+++++++|+++.....+..+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999998776666555433
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0003 Score=63.18 Aligned_cols=154 Identities=11% Similarity=0.001 Sum_probs=107.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hhccCcHHHHHHHHHHhHHhhCCCCCchHHHH---------
Q 042265 317 VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVG--CSHAGLVDEARKLFDEMESVYGVSKELKHYGC--------- 385 (490)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--------- 385 (490)
.++...|++++|.+.--...+... ...+...+++ +...++.+.+...|++... ..|+...-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 345667888888877666655421 1223333333 3346778888888887764 2343322111
Q ss_pred ----HHhhhhhcCCHHHHHHHHhhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 386 ----MADLLGRAGLIEEALEMIKKMP-MGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 386 ----l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
=..-..+.|++.+|.+.+.+.. ..| ++..|.....+..+.|+..+|+.-.+++++++|.-...|..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1223457789999999987754 333 666777777778889999999999999999999888888888888
Q ss_pred HHhcCChHHHHHHHHHHhcCC
Q 042265 456 YANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+...++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999988876553
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=3.7e-05 Score=66.15 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=78.7
Q ss_pred hhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHH
Q 042265 388 DLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDV 465 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (490)
.-+.+.+++++|+..|.+.. ..| |++-|..-..+|.+.|.++.|++-++.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567899999999998754 455 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 042265 466 VKIRRSLDAG 475 (490)
Q Consensus 466 ~~~~~~m~~~ 475 (490)
++.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999876543
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.92 E-value=0.00015 Score=67.36 Aligned_cols=90 Identities=10% Similarity=-0.083 Sum_probs=72.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcC
Q 042265 315 MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAG 394 (490)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (490)
....+...|++++|++.|+++++... -+...|..+..++...|++++|...++++.. -.+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 34556778999999999999888643 2566777788888899999999999999887 44556777888888899999
Q ss_pred CHHHHHHHHhhCC
Q 042265 395 LIEEALEMIKKMP 407 (490)
Q Consensus 395 ~~~~A~~~~~~~~ 407 (490)
++++|...|++..
T Consensus 85 ~~~eA~~~~~~al 97 (356)
T PLN03088 85 EYQTAKAALEKGA 97 (356)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0024 Score=51.11 Aligned_cols=132 Identities=13% Similarity=-0.018 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C---CHHHH
Q 042265 340 IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G---DVFVW 415 (490)
Q Consensus 340 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~ 415 (490)
..|+...-..|..+..+.|+..+|...|++...- -+..|......+.++....+++..|...++++.+. | ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666667778888889999999888888873 44567777777888888888888888888875432 2 44555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 416 SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 416 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
..+...+...|.+.+|+..|+.++...|.. ......+..+.+.|+.++|..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 567788888899999999999998887754 366667777888888777766555444
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.85 E-value=2.9e-05 Score=52.77 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+.|++++|++.++++.+..|++..+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888888888888888877654
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=2.3e-05 Score=43.56 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCC
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVS 106 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 106 (490)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367777777777777777777777777665
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0031 Score=56.97 Aligned_cols=266 Identities=11% Similarity=-0.044 Sum_probs=129.6
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHH
Q 042265 121 CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHAR 197 (490)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 197 (490)
+.+..++..|+..+...++.+ +.+..-|..-...+...|++++|.--.+.-+.. ........-+++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 344456666666666666654 444555555555566666666665544433221 1122333334444444445555
Q ss_pred HHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHccCChHHHHHHHHHHHHcCCC
Q 042265 198 QLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI-KPDNIALVSA-LSACARLGELEQGKNIHRYIELNQIR 275 (490)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~ 275 (490)
+.++. ...| ....++..++....... +|.-.++-.+ ..++...|+.++|.++--.+.+.. .
T Consensus 138 ~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~ 200 (486)
T KOG0550|consen 138 EKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A 200 (486)
T ss_pred HHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c
Confidence 44441 1111 11122222222222211 1323333322 234455667777666655555443 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeeh---------------HHHHHHHHHHcCChHHHHHHHHHHHHC--
Q 042265 276 VDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFT---------------WNAMLVGLAMHGLGRLSLVYFSRMIEA-- 338 (490)
Q Consensus 276 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~~m~~~-- 338 (490)
.+....-.-..++.-.++.+.+...|++...-++.. +..-..-..+.|.+..|.+.|.+.+..
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 222222222223344566677777777666533321 111223345667777777777777653
Q ss_pred -CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC
Q 042265 339 -RIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM 406 (490)
Q Consensus 339 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (490)
...|+...|........+.|+..+|+.--+...+. .+.-...|..-..++...++|++|.+-+++.
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555666666666777777777766666541 1111222223333444556677777776653
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.00021 Score=52.04 Aligned_cols=88 Identities=24% Similarity=0.186 Sum_probs=40.6
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 431 (490)
+...|++++|...++.+.+ ..+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...+...|+++.|
T Consensus 10 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 10 YYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence 3334444444444444443 122222333444444444455555555444422 111 334455555555555666666
Q ss_pred HHHHHHHHhhCC
Q 042265 432 EAAAEHVMKLKP 443 (490)
Q Consensus 432 ~~~~~~~~~~~p 443 (490)
...++++.+..|
T Consensus 88 ~~~~~~~~~~~~ 99 (100)
T cd00189 88 LEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHccCC
Confidence 666665555444
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00021 Score=59.01 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=57.2
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMPM-GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
.+..+...+...|++++|...|++... .+ ....+..++..+.+.|++++|+..++++++..|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344455555555666666655554331 11 1345666667777777777777777777777777777777777777
Q ss_pred HhcCC--------------hHHHHHHHHHHhc
Q 042265 457 ANADR--------------WEDVVKIRRSLDA 474 (490)
Q Consensus 457 ~~~g~--------------~~~A~~~~~~m~~ 474 (490)
...|+ +++|.+++++...
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 66665 4556666655544
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.79 E-value=0.0043 Score=54.14 Aligned_cols=173 Identities=9% Similarity=0.036 Sum_probs=100.4
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCe---eh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 042265 284 LVDFYAKCGYINTAIEIFESSQEKNL---FT---WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH- 356 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 356 (490)
....+.+.|++++|.+.|+++....+ .. .-.++.++.+.+++++|...+++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 33444556666666666666654211 11 123455667777777777777777765332222333333333221
Q ss_pred -c---------------Cc---HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 042265 357 -A---------------GL---VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSG 417 (490)
Q Consensus 357 -~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (490)
. .| ..+|...|+.+.+. . |+. .-..+|...+..+..+ -...-..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--y-P~S-------------~ya~~A~~rl~~l~~~-la~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--Y-PNS-------------QYTTDATKRLVFLKDR-LAKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--C-cCC-------------hhHHHHHHHHHHHHHH-HHHHHHH
Confidence 0 11 23455555565553 2 222 2233444333333211 1111224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDG---GVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+...|.+.|.+.-|+.-++.+++..|+.+ .+...+..+|.+.|..++|..+.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 55668899999999999999999777655 466688899999999999998877654
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.78 E-value=5.6e-05 Score=50.78 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=49.5
Q ss_pred HHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 386 MADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+...+...|++++|.+.|+++.. .| +...+..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45667788999999999988653 34 778888899999999999999999999999999864
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=0.021 Score=51.47 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhh-CCCCC--chH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKP-----DGV-TILGALVGCSHAGLVDEARKLFDEMESVY-GVSKE--LKH 382 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~ 382 (490)
+..+...+.+.|++++|.++|++........ +.. .+...+-++...||+..|.+.+++..... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 3445666777788888888887776543221 111 22223334555788888888888876531 22222 234
Q ss_pred HHHHHhhhhh--cCCHHHHHHHHhhCCCC
Q 042265 383 YGCMADLLGR--AGLIEEALEMIKKMPMG 409 (490)
Q Consensus 383 ~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 409 (490)
...|+.++-. ...+++|..-|+.+..-
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 4556666643 34566777777776643
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=5.5e-05 Score=53.92 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=38.8
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAA 435 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 435 (490)
.|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++....+ +......++.++.+.|++++|++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 355555666665555531111123333335555666666666666665522111 2233334455566666666666665
Q ss_pred HH
Q 042265 436 EH 437 (490)
Q Consensus 436 ~~ 437 (490)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.76 E-value=0.0089 Score=57.17 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C-----------CH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G-----------DV 412 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----------~~ 412 (490)
.+...+...+.+...+..|-++|.+|-.. ..+++.....+++++|.++-++.++- + ..
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 34444444445555566666666665432 34566666667777776666655422 1 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.-+...-.+|.+.|+-.+|.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1222333456667777777777777654
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.0014 Score=58.69 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVG-CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+ .++.+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 57777888888888999999999998543 2233444443333 3336778889999999998 456677888889999
Q ss_pred hhhcCCHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 390 LGRAGLIEEALEMIKKMPM-GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+...|+.+.|..+|++... .+ ....|...+..-.+.|+.+.+..+.+++.+..|.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998653 33 345899999999999999999999999999888755
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.75 E-value=0.00022 Score=58.66 Aligned_cols=94 Identities=12% Similarity=-0.087 Sum_probs=72.7
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
....+..++..+...|++++|...|++.. ..+ ...++..+...+...|++++|+..++++++..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 34456667777778888888888887753 111 2457888889999999999999999999999999888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHH
Q 042265 454 DVYA-------NADRWEDVVKIRRSL 472 (490)
Q Consensus 454 ~~~~-------~~g~~~~A~~~~~~m 472 (490)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 778887666555543
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.73 E-value=0.00013 Score=50.32 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=49.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
..|.+.+++++|.+.++++++.+|+++..+...+.++.+.|++++|.+.+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788899999999999999999988888889999999999999999998887654
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.00034 Score=50.89 Aligned_cols=79 Identities=10% Similarity=-0.010 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCC-CCCcccHHHHHHHHhccC--------CcHHHHHHHHHHHHhCCCCchhHHH
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSI-PPDFYSFPFLLRACSQLC--------SHSLAQTIHSQVLKLGFICDVFVLN 150 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (490)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. ..-..+.+|+.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999887653 2345788899999999999999999
Q ss_pred HHHHHHHh
Q 042265 151 SLMHVYCV 158 (490)
Q Consensus 151 ~li~~~~~ 158 (490)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
No 177
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.9e-05 Score=42.14 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLD 238 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 238 (490)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.71 E-value=0.037 Score=50.33 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=83.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIH 425 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (490)
+.+..+.-|...|+...|.++-.+. .+ |+...|...+.+|+..++|++-.++-.. +.++..|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4455566677788887777665554 33 7888899999999999999988887654 33678899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
|+..+|..+..++ .+..-+..|.++|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHH
Confidence 9999999888872 2366777888999999987663
No 179
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.69 E-value=0.042 Score=50.51 Aligned_cols=393 Identities=9% Similarity=0.015 Sum_probs=210.7
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCc---ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPST---FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPP 109 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 109 (490)
.+...|-.|+..|. ..|..++.+++++++..|-+ .+|..-+++-...+++.....+|.+..... .
T Consensus 40 tnI~S~fqLiq~~~----------tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l 107 (660)
T COG5107 40 TNILSYFQLIQYLE----------TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--L 107 (660)
T ss_pred hhHHHHHHHHHHHh----------hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--c
Confidence 67788999999999 89999999999999886643 478888888888889999999998887754 3
Q ss_pred CcccHHHHHHHHhccCCc------HHHHHHHHHHHH-hCCCCch-hHHHHHHHHH---HhcC------ChHHHHHHHHhc
Q 042265 110 DFYSFPFLLRACSQLCSH------SLAQTIHSQVLK-LGFICDV-FVLNSLMHVY---CVFH------RLRDAQELFDEI 172 (490)
Q Consensus 110 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~g~~~~~-~~~~~li~~~---~~~g------~~~~A~~~~~~~ 172 (490)
+...|...+....+.+.. ....+.|+-... .++.|-. ..|+..+..+ -..| ++|.....+.++
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 455555555543332211 122334444333 3444432 3344433322 1223 345556666666
Q ss_pred ccCC----------chhHHHHHHHHH-------hcCCHHHHHHHHhhCCC---------C-CeehHH-----------HH
Q 042265 173 LYRD----------VVSCNTLIDGYV-------KAGDLAHARQLFDRMPF---------R-DAVSWG-----------TL 214 (490)
Q Consensus 173 ~~~~----------~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~---------~-~~~~~~-----------~l 214 (490)
+... -..|..=++-.. ..--+-.|...+++... | +..+++ ..
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNw 267 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNW 267 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhH
Confidence 4321 111111111100 00112223333333220 0 111111 11
Q ss_pred HHHHHhc-----CCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 215 VAGYAQS-----DQC--EEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 215 ~~~~~~~-----g~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
|.--... |+. ....-++++.... +......|.---.-+...++-+.|.+.... |.+..+.....+...
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~lse~ 342 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMFLSEY 342 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchheeHHHH
Confidence 1111100 000 0000111111110 001111111111122233444555444332 323222222223333
Q ss_pred HHhcCCHHHHHHHHhccC---------------------------------CCCeehHHHHHHHHHHcCChHHHHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQ---------------------------------EKNLFTWNAMLVGLAMHGLGRLSLVYFSR 334 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 334 (490)
|.-..+-+.....|++.. ..-..+|...+..-.+....+.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333332211 11234567777777777888888889988
Q ss_pred HHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC----
Q 042265 335 MIEAR-IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG---- 409 (490)
Q Consensus 335 m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 409 (490)
..+.| +.++...+++++..++ .|+...|.++|+.-.. .++.++.--+..+..+.+.++-+.|..+|+....+
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~ 499 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT 499 (660)
T ss_pred HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh
Confidence 88887 5677778888888664 6888888888887766 33334433455666777888888888888854322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 410 GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 410 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
.-..+|..++..-..-|+...+..+-+++.+..|..
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 235678888888888888888888888888877764
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.068 Score=52.41 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCR 423 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 423 (490)
..+.+--+.-+...|+-.+|.++-.+.+- ||...|..-+.+++..+++++-+++-+..+ .+.-|..+..+|.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACL 755 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHH
Confidence 34455555666778888888877766543 777888888888999999988887777655 3566778888999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+.|+.++|..++-+... +.-...+|.+.|++.+|.++-
T Consensus 756 ~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 99999999888876522 225777888888888887653
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.67 E-value=0.0011 Score=54.86 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=58.5
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD--NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLV 285 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (490)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566677777777788888877777765432222 3466677777777788888888777777654 33455566666
Q ss_pred HHHHhcCCHHHHH
Q 042265 286 DFYAKCGYINTAI 298 (490)
Q Consensus 286 ~~~~~~~~~~~A~ 298 (490)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6666666544433
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.63 E-value=0.0034 Score=56.50 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc-----ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF-----YSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
|......|...|++++|.+.|.+..+.....+. ..|......+ +..+++.|...+ ...+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~---------------~~A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECY---------------EKAI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHH---------------HHHH
Confidence 444556666677777777777665432100000 0111111211 112333333333 3334
Q ss_pred HHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC-------C--CeehHHHHHHHHHhcCC
Q 042265 154 HVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKA-GDLAHARQLFDRMPF-------R--DAVSWGTLVAGYAQSDQ 223 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~ 223 (490)
..|...|++..|-+++.+ +...|... |++++|.+.|++... + -..++..+...+.+.|+
T Consensus 102 ~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 445555555555444433 23334444 555555555544321 1 12345566677777788
Q ss_pred hhHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCC--hhhHHHHHHHHHhc--
Q 042265 224 CEEAIQLFCNMMDLDIK-----PDNI-ALVSALSACARLGELEQGKNIHRYIELNQ--IRVD--SFLSTGLVDFYAKC-- 291 (490)
Q Consensus 224 ~~~A~~~~~~m~~~~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~-- 291 (490)
+++|.++|++....... .+.. .|...+-++...||...|...++...... +..+ ..+...|+.++-..
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 88888888776654221 1221 22333445556677777777777766442 1111 23444555555432
Q ss_pred CCHHHHHHHHhccCCCCe
Q 042265 292 GYINTAIEIFESSQEKNL 309 (490)
Q Consensus 292 ~~~~~A~~~~~~~~~~~~ 309 (490)
..++.+..-|+.+.+-|.
T Consensus 251 e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 251 EAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp CCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHcccCccHH
Confidence 345556666666555443
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.62 E-value=0.0022 Score=62.40 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
++..+..+.......|++++|...++++++++|. ...|..++.++...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444444455555555555555555552 34555555555555555555555555443
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.62 E-value=0.014 Score=46.91 Aligned_cols=132 Identities=16% Similarity=0.019 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC-----CeehHH
Q 042265 239 IKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK-----NLFTWN 313 (490)
Q Consensus 239 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~ 313 (490)
+.|+...-..|..+....|+..+|...|.+....-+..|..+...+.++....++...|...++++-+. ++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 356666666777777788888888888877776666667777777777777777777777777766542 344555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 314 AMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.+...+...|.+.+|+..|+..... .|+...-......+.++|+.+++..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6667777777777777777777764 34443333333445566666665555444444
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.052 Score=49.35 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=50.4
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 285 VDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
+.-+...|+...|.++-.+..-|+-.-|-..+.+++..++|++-.++... . -++.-|..++.+|.+.|+..+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCHHHHH
Confidence 34444455555555555555555555555555555555555554443221 1 12244555555555555555555
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHH
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMI 403 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (490)
.+..++. +..-+..|.++|++.+|.+.-
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 5544421 123344555555555554443
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.0013 Score=48.03 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCChhh
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDI-KPDNIALVSALSACARLG--------ELEQGKNIHRYIELNQIRVDSFL 280 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 280 (490)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+...+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 899999999999887653 23456778999999999999999
Q ss_pred HHHHHHHHHh
Q 042265 281 STGLVDFYAK 290 (490)
Q Consensus 281 ~~~l~~~~~~ 290 (490)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0037 Score=60.88 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=97.5
Q ss_pred CCeehHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc--------CcHHHHHHHHHHhHH
Q 042265 307 KNLFTWNAMLVGLAMH-----GLGRLSLVYFSRMIEARIKPDG-VTILGALVGCSHA--------GLVDEARKLFDEMES 372 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 372 (490)
.+...|...+.+.... ++...|..+|++.++. .|+- ..+..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4667777777765432 2366888888888875 4543 3444333322211 223444444444433
Q ss_pred hhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 373 VYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
....+.++..|..+.-.....|++++|...+++.. ..|+...|..++..+...|+.++|.+.++++.+++|.++ +|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p-t~~ 490 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN-TLY 490 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-hHH
Confidence 21244456778777777778899999999999854 456888999999999999999999999999999999988 443
No 188
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.60 E-value=0.00036 Score=57.53 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=82.7
Q ss_pred hhHHHHhhccC--CCCCcccHHHHHHHHHcC-----CCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccC--------
Q 042265 61 LSYALSIFNNI--PYPSTFSYNTIIRAHTLF-----SSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLC-------- 125 (490)
Q Consensus 61 ~~~A~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-------- 125 (490)
+..-...|+.. ...+-.+|..+++.+.+. |..+-....++.|.+.|+.-|..+|+.|++.+=+..
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 33445566665 467888999999988754 777778888999999999999999999999875421
Q ss_pred --------CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 126 --------SHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 126 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
+-+-|++++++|...|+-||.+++..+++.+++.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345689999999999999999999999999977664
No 189
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.60 E-value=0.0015 Score=51.39 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=40.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
.+...+...|++++|.++|+.+.... +-+...|..|.-++...|++++|+..|....... +.++..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33334444555555555555444422 1122333444444444555555555555554444 344444444444444444
Q ss_pred CHHHHHHHHh
Q 042265 293 YINTAIEIFE 302 (490)
Q Consensus 293 ~~~~A~~~~~ 302 (490)
+.+.|++.|+
T Consensus 118 ~~~~A~~aF~ 127 (157)
T PRK15363 118 NVCYAIKALK 127 (157)
T ss_pred CHHHHHHHHH
Confidence 4444444443
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.59 E-value=0.00073 Score=63.02 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=48.4
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHhhhC--CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 76 TFSYNTIIRAHTLFSSPLNAVVLFSQMRTV--SIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
......++..+....+.+.+..++-+.+.. ....-..|.+++++.|...|..+.+..++..=...|+-||..+++.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334444444444444555555555554443 111223344455555555555555555555555555555555555555
Q ss_pred HHHHhcCChHHHHHHHHhc
Q 042265 154 HVYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~ 172 (490)
+.+.+.|++..|.++...|
T Consensus 146 d~fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEM 164 (429)
T ss_pred HHHhhcccHHHHHHHHHHH
Confidence 5555555555555555444
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.0012 Score=61.54 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=87.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 042265 176 DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR------DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSA 249 (490)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 249 (490)
+......+++.+....+++.+..++.+.... -..|..++++.|.+.|..++++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334455566666666677777776665422 2446678999999999999999999988889999999999999
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042265 250 LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC 291 (490)
Q Consensus 250 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (490)
|..+.+.|++..|.++...|...+...+..++...+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999998888887666666666555555544
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.0013 Score=49.90 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=38.6
Q ss_pred hhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHhcC
Q 042265 389 LLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE---DGGVYKVLADVYANAD 460 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g 460 (490)
++-..|+.++|+.++++....+ -...+-.+...+...|++++|..++++.....|+ +......++.++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 3444445555555444432211 1223334444455555555555555555554444 3333344444555555
Q ss_pred ChHHHHHHHH
Q 042265 461 RWEDVVKIRR 470 (490)
Q Consensus 461 ~~~~A~~~~~ 470 (490)
+.++|++.+-
T Consensus 90 r~~eAl~~~l 99 (120)
T PF12688_consen 90 RPKEALEWLL 99 (120)
T ss_pred CHHHHHHHHH
Confidence 5555555543
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.52 E-value=0.021 Score=49.94 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=45.0
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccH----HHHHHHHhccCCcHHHHHHHHHHHHhC
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSF----PFLLRACSQLCSHSLAQTIHSQVLKLG 141 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~g 141 (490)
+...+-.....+.+.|++++|++.|+.+...- |+.... -.+..++.+.++++.|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33333344555677889999999999988753 443322 345567788889999999999888864
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.011 Score=50.11 Aligned_cols=138 Identities=9% Similarity=0.060 Sum_probs=103.0
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCh-----hhHHH
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDS-----FLSTG 283 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 283 (490)
...+.++..+.-.|.+.-....+.+.++...+.+......+++.-.+.||.+.|..+|+...+..-..+. .+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456777788888899999999999998876778888888999999999999999999988765333333 33334
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 042265 284 LVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTIL 348 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 348 (490)
....|.-.+++..|...+.++... ++..-|.-.-+..-.|+..+|++.++.|++. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 444566778888999999887754 4555565555666778999999999999885 44444433
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=97.51 E-value=0.002 Score=50.99 Aligned_cols=85 Identities=11% Similarity=-0.019 Sum_probs=62.2
Q ss_pred hhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHH
Q 042265 390 LGRAGLIEEALEMIKKMP--MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVK 467 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (490)
+...|++++|..+|+-+. ...+..-|..|..++...+++++|+..|..+..+.++||..+...+.+|...|+.+.|..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 446677777777777643 223666667777777777888888888888777777777777788888888888888888
Q ss_pred HHHHHhc
Q 042265 468 IRRSLDA 474 (490)
Q Consensus 468 ~~~~m~~ 474 (490)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7777665
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.51 E-value=0.0032 Score=47.72 Aligned_cols=90 Identities=18% Similarity=0.104 Sum_probs=54.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHH
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPD--NIALVSALSACARLGELEQGKNIHRYIELNQIRV---DSFLSTGLVDF 287 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 287 (490)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++...... +. +......+..+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 345566777888888888888877775543 2345556677777778888877777776542 11 12222223334
Q ss_pred HHhcCCHHHHHHHHhc
Q 042265 288 YAKCGYINTAIEIFES 303 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~ 303 (490)
+...|+.++|.+.+-.
T Consensus 85 L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 5555666665555433
No 197
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.0029 Score=52.01 Aligned_cols=80 Identities=13% Similarity=0.029 Sum_probs=48.2
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKP--DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
..|..++..+...|++++|+..|++.......| ...++..+..++...|+.++|...++...... +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 455666666777777777777777776543222 12356666677777777777777777766553 333344444444
Q ss_pred HHH
Q 042265 287 FYA 289 (490)
Q Consensus 287 ~~~ 289 (490)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 198
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.00087 Score=60.04 Aligned_cols=129 Identities=14% Similarity=0.091 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh-cCCHHHHHHHHhhCCC-CC-CHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR-AGLIEEALEMIKKMPM-GG-DVFVWSGLLGG 421 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 421 (490)
.+|..++....+.+..+.|..+|.++.+ ....+..+|-.....-.. .++.+.|.++|+.... -| +...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888888899999999999999986 444455666666555334 5667779999998652 23 88889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDG---GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+...++.+.|..+|++++..-|.+. .+|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999655443 58899999999999999999999888764
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.43 E-value=0.00011 Score=41.44 Aligned_cols=33 Identities=24% Similarity=0.603 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 434 AAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
+++++++++|+++.+|..++.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 368899999999999999999999999999986
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.40 E-value=0.00042 Score=47.13 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=48.9
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHG-NVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 443 (490)
+..|..+...+...|++++|+..|++.. ..| ++..|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566677777777788888888777643 233 6778888888888888 68899999988888877
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.39 E-value=0.00016 Score=49.00 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=29.3
Q ss_pred hcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 392 RAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
..|++++|++.|+++. ..| +...+..++.+|.+.|++++|.++++++....|+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 3455555555555532 222 555555555566666666666666666666555544
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.36 E-value=0.00038 Score=42.22 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
.++..+...|...|++++|+++++++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999988887764
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.36 E-value=0.11 Score=47.10 Aligned_cols=244 Identities=14% Similarity=0.115 Sum_probs=147.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPDNI--ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINT 296 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 296 (490)
.-.|+++.|.+-|+.|... |... ....|.-...+.|+.+.|..+-+..-..- +.-.......+...+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3456677777777766542 2221 12223333345666666666666655543 3334556666777777777777
Q ss_pred HHHHHhccCC-----CCee--hHHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHH
Q 042265 297 AIEIFESSQE-----KNLF--TWNAMLVGL---AMHGLGRLSLVYFSRMIEARIKPDGV-TILGALVGCSHAGLVDEARK 365 (490)
Q Consensus 297 A~~~~~~~~~-----~~~~--~~~~l~~~~---~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 365 (490)
|+++++.-.. ++.. .-..|+.+- .-.-+...|...-.+..+ +.|+-. .-.....++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 7777764332 2221 111222211 112345556555544444 344432 22334567888999999999
Q ss_pred HHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHH--H--HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 366 LFDEMESVYGVSKELKHYGCMADLLGRAGLIEEA--L--EMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
+++.+-+. .|.+...... .+.+.|+.... . +-++.|+.. +......+..+-...|++..|..--+.+.+.
T Consensus 285 ilE~aWK~---ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKA---EPHPDIALLY--VRARSGDTALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhc---CCChHHHHHH--HHhcCCCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 99998864 4555444322 23455544322 1 223344433 7788888888999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhc-CChHHHHHHHHHHhcC
Q 042265 442 KPEDGGVYKVLADVYANA-DRWEDVVKIRRSLDAG 475 (490)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 475 (490)
.|... .|..|+..-... |+-.++...+-+..+.
T Consensus 359 ~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99765 888888877654 9999998888776655
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.34 E-value=0.016 Score=49.31 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=38.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCc---hHHHHHHHHHhcCChHHHH
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGG---VYKVLADVYANADRWEDVV 466 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 466 (490)
++..|.+.|.+..|..-++.+++..|+.+. +...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 566689999999999999999998888653 4567888899999887554
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.32 E-value=0.13 Score=47.43 Aligned_cols=406 Identities=11% Similarity=0.031 Sum_probs=228.9
Q ss_pred HHHHhhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 042265 63 YALSIFNNIP--YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKL 140 (490)
Q Consensus 63 ~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 140 (490)
+-+++=++++ +.|+.+|-.||.-+..++..++..+++++|..- .+--...|..-+.+-....++...+.+|.+.+..
T Consensus 27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 27 DELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3446667775 458889999999999999999999999999752 2334456777777777778999999999998876
Q ss_pred CCCCchhHHHHHHHHHHhcCCh------HHHHHHHHhc-----ccC-CchhHHHHHHHH---------HhcCCHHHHHHH
Q 042265 141 GFICDVFVLNSLMHVYCVFHRL------RDAQELFDEI-----LYR-DVVSCNTLIDGY---------VKAGDLAHARQL 199 (490)
Q Consensus 141 g~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~~-----~~~-~~~~~~~l~~~~---------~~~~~~~~a~~~ 199 (490)
. .+...|...++--.+.+.. ....+.|+-. .+| ....|+..+..+ -...+++...+.
T Consensus 106 ~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 S--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred h--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4 4466666666544443311 1112222222 222 334555554432 233445556666
Q ss_pred HhhCCCC----------CeehHHHHHHHHHh---cC----ChhHHHHHHHHHHh--CCCC----CCHHHHHHHHH-----
Q 042265 200 FDRMPFR----------DAVSWGTLVAGYAQ---SD----QCEEAIQLFCNMMD--LDIK----PDNIALVSALS----- 251 (490)
Q Consensus 200 ~~~~~~~----------~~~~~~~l~~~~~~---~g----~~~~A~~~~~~m~~--~~~~----p~~~~~~~l~~----- 251 (490)
+.++... |-..|..=++.... .| -+-.|...+++... .|.. .+..+++.+-+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 6665532 11112111111111 01 13345555555543 2222 12223332211
Q ss_pred ------HHHcc-----CC--hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHH
Q 042265 252 ------ACARL-----GE--LEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVG 318 (490)
Q Consensus 252 ------~~~~~-----~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 318 (490)
--... |+ .....-++++.... ++....+|--.-..+...++-+.|....+...+-.+...-.+...
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ 342 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEY 342 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHH
Confidence 10000 00 01111122222222 123334444444445566778888888776554322211111122
Q ss_pred HHHcCChHHHHHHHHHHHH--------------CCCC---------------CCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIE--------------ARIK---------------PDGVTILGALVGCSHAGLVDEARKLFDE 369 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~--------------~~~~---------------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (490)
|...++.+.....|+...+ .+.. --...|...+.+..+..-++.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2222222222222221110 0110 1123455566666677778999999999
Q ss_pred hHHhhC-CCCCchHHHHHHhhhhhcCCHHHHHHHHhh-CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh-hCC-C
Q 042265 370 MESVYG-VSKELKHYGCMADLLGRAGLIEEALEMIKK-MPMGGDVFVW-SGLLGGCRIHGNVEIAEAAAEHVMK-LKP-E 444 (490)
Q Consensus 370 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~-~~p-~ 444 (490)
+.+. + ..+++..+++++..++ .|+..-|.++|+- |...||...| +-.+..+...++-+.|..+|+..++ +.. .
T Consensus 423 ~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 423 LRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred Hhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 9987 5 6788888999888664 6788899999986 5555655554 4566667888999999999997776 221 1
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 445 DGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
-..+|..++.--..-|+...+..+-++|.+
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 234888888888889998888877766643
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.29 E-value=0.0027 Score=55.90 Aligned_cols=101 Identities=15% Similarity=0.029 Sum_probs=55.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC----CHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG----DVFVWSGLL 419 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~ 419 (490)
.|...+....+.|++++|...|+.+.+.+...+ .+..+..+...|...|++++|...|+.+.. .| ....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444433455677777777777666421111 023445566666666666666666665431 12 344444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 555566666666666666666666544
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.29 E-value=0.0024 Score=57.51 Aligned_cols=128 Identities=11% Similarity=-0.012 Sum_probs=82.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHH---hHHhhCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhC-------CCCC-CHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDE---MESVYGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKM-------PMGG-DVF 413 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~ 413 (490)
.|..|...|.-.|+++.|+...+. +.+.+|.+. ....+..+..++.-.|+++.|.+.++.- ..+. .+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555666667888888766543 222234433 2345666777788888888888877652 1111 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh----C--CCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKL----K--PEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+...|...|.-..++++|+.+..+-+.+ . .-...++.+|+.++...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6667777777777888888887775541 1 1123477888888888888888887766544
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.29 E-value=0.00072 Score=54.13 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh-----cCCCCCCCce
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD-----AGKIKKNAGC 483 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 483 (490)
.....++..+...|+++.|+..+++++..+|-+...+..++.+|...|+..+|.++|+++. +.|+.|+|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3556677788899999999999999999999999999999999999999999999998875 4588888764
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.28 E-value=0.0013 Score=60.76 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=30.1
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhh-CCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKK-MPMGGD-V---FVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
...++.+..+|...|++++|+..|++ +...|+ . .+|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444555555555555555555544 223332 2 23555555555555555555555555554
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.034 Score=47.32 Aligned_cols=136 Identities=15% Similarity=0.007 Sum_probs=103.9
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHH---
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCM--- 386 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--- 386 (490)
...+.++..+.-.|.+.-.+..+++.++...+-++.....|.+.-.+.||.+.|..+|+...+. .-..+....+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3456677777778889889999999998766667788888888888999999999999988765 333444333333
Q ss_pred --HhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 387 --ADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 387 --~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...|.-.+++.+|...+.++.... ++...|.-.-+..-.|+..+|++.++.+++..|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 334566788899999998876443 666666666666677999999999999999988754
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.003 Score=52.26 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=67.8
Q ss_pred CCCeehHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----------------CChHHHH
Q 042265 205 FRDAVSWGTLVAGYAQ-----SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL----------------GELEQGK 263 (490)
Q Consensus 205 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 263 (490)
.+|..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|+..+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4455566666666654 467777777888888888888888888888876542 2346688
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042265 264 NIHRYIELNQIRVDSFLSTGLVDFYAKCGY 293 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (490)
+++++|+..|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999998876553
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.22 E-value=0.0019 Score=58.20 Aligned_cols=252 Identities=16% Similarity=0.081 Sum_probs=152.3
Q ss_pred HHHHcCCCchhHHHHHHHhhhCCCCCCcc----cHHHHHHHHhccCCcHHHHHHHHHH--HH--hCC-CCchhHHHHHHH
Q 042265 84 RAHTLFSSPLNAVVLFSQMRTVSIPPDFY----SFPFLLRACSQLCSHSLAQTIHSQV--LK--LGF-ICDVFVLNSLMH 154 (490)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~g~-~~~~~~~~~li~ 154 (490)
.-+++.|+....+.+|+...+.| .-|.. .|..|.++|.-.+++++|.++...= +. .|- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34789999999999999999987 33433 3666777777788899988874321 11 110 112233344556
Q ss_pred HHHhcCChHHHHHHHHhcccC---------CchhHHHHHHHHHhcCC--------------------HHHHHHHHhhCC-
Q 042265 155 VYCVFHRLRDAQELFDEILYR---------DVVSCNTLIDGYVKAGD--------------------LAHARQLFDRMP- 204 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~- 204 (490)
.+--.|.+++|.....+-+.- ....+..+...|...|+ ++.|.++|.+-.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 666678888877664433110 12234445555543332 333444443311
Q ss_pred ------CC--CeehHHHHHHHHHhcCChhHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 042265 205 ------FR--DAVSWGTLVAGYAQSDQCEEAIQLFCNMM----DLDIK-PDNIALVSALSACARLGELEQGKNIHRYIEL 271 (490)
Q Consensus 205 ------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 271 (490)
.+ -..+|..|...|.-.|+++.|+..-+.-+ +-|-+ .....+..+.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11 23456667777777788888887655432 22222 1234677788888888888888888776443
Q ss_pred c----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---------CCeehHHHHHHHHHHcCChHHHHHHHHHHH
Q 042265 272 N----Q-IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---------KNLFTWNAMLVGLAMHGLGRLSLVYFSRMI 336 (490)
Q Consensus 272 ~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 336 (490)
. | ........-+|...|.-..++++|+.++.+-.. ....++-+|..+|...|..++|+.+.+.-.
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 2 123344455677778878888888887764321 133466677778888888888777665543
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.11 Score=50.64 Aligned_cols=73 Identities=8% Similarity=-0.035 Sum_probs=41.4
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCC-CCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 59 DPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVS-IPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 59 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
|.+++|.+++-.+.+.|. .|....+-|++-...++++.--... -..-...|+.+...++....+++|.+.|..
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999988876653 3555666677766666654321100 000112355555555555566666555543
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.083 Score=48.55 Aligned_cols=163 Identities=20% Similarity=0.081 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC-------CeehHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQEK-------NLFTWNAMLVGLAM---HGLGRLSLVYFSRMIEARIKPDGVTILGA 350 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 350 (490)
...++-+|....+++...++++.+... ....-....-++.+ .|+.++|++++..+....-.+++.++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334444566666666666666666543 11122233344555 67788888888776555556677777776
Q ss_pred HHHhhc---------cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH----HHHHH---hh-CC------
Q 042265 351 LVGCSH---------AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE----ALEMI---KK-MP------ 407 (490)
Q Consensus 351 ~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~---~~-~~------ 407 (490)
.+.|-. ....++|...|.+.-+ ..|+...--.++..+...|...+ ..++- .. +.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 665421 2236677777776543 33444332223333333333221 12221 11 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 408 MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...+-..+.+++.++.-.|+.++|.+.++++.+..|+.-
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 112667778889999999999999999999999887644
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.19 E-value=0.0048 Score=54.30 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=65.0
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHH
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG---GVYKVLA 453 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 453 (490)
.|...+..+.+.|++++|...|+.+. ..| .+..+..++..|...|++++|...|+++++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444455678888888877754 233 235666777778888888888888888887666643 4555567
Q ss_pred HHHHhcCChHHHHHHHHHHhcC
Q 042265 454 DVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.++...|++++|.++++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888888877654
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.18 E-value=0.0007 Score=47.36 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 412 VFVWSGLLGGCRIHGNVEIAEAAAEHVMK----LKPED---GGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
..+++.+...|...|++++|+..++++++ ..+++ ..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34677788888888888888888888886 22222 34677888888888999999888887643
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.11 E-value=0.045 Score=52.61 Aligned_cols=262 Identities=16% Similarity=0.118 Sum_probs=146.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCC-----------CCCeehHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHH
Q 042265 179 SCNTLIDGYVKAGDLAHARQLFDRMP-----------FRDAVSWGTLVAGYAQSDQ--CEEAIQLFCNMMDLDIKPDNIA 245 (490)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~ 245 (490)
.+.+-+..|...|.+++|.++----. .-+...++..-.+|.+..+ +-+.+.-+++++++|-.|+...
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence 44444555666777776655421111 0022334445556665554 3344555677777887787653
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHH----HHH
Q 042265 246 LVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVG----LAM 321 (490)
Q Consensus 246 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~----~~~ 321 (490)
+...|+-.|++.+|.++|.+- |. -+..+++|...+.++.|.+++...... .-..|+.- ...
T Consensus 638 ---lA~~~Ay~gKF~EAAklFk~~---G~------enRAlEmyTDlRMFD~aQE~~~~g~~~---eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 638 ---LADVFAYQGKFHEAAKLFKRS---GH------ENRALEMYTDLRMFDYAQEFLGSGDPK---EKKMLIRKRADWARN 702 (1081)
T ss_pred ---HHHHHHhhhhHHHHHHHHHHc---Cc------hhhHHHHHHHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHhhh
Confidence 455667788888888887643 21 123456666666677776666543321 11111100 001
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHH
Q 042265 322 HGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALE 401 (490)
Q Consensus 322 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (490)
.+++..|-+++ +..|- ....+..+...|-.+.+.++-+++-. .+..+...+..-+.+...+.-|-+
T Consensus 703 ~kePkaAAEmL---iSaGe------~~KAi~i~~d~gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 703 IKEPKAAAEML---ISAGE------HVKAIEICGDHGWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred cCCcHHHHHHh---hcccc------hhhhhhhhhcccHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHH
Confidence 12222222111 11110 01112223344444444444444333 344455556666667778888999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC----------chHHHHHHHHHhcCChHHHHHHHHH
Q 042265 402 MIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG----------GVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
+|++|.+. ..++......+++.+|..+.++.-+..|+-. .-|...-.+|.++|+-.||..++++
T Consensus 769 IF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 769 IFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 99988754 3456667889999999999998877655421 2344555778889999999999988
Q ss_pred HhcC
Q 042265 472 LDAG 475 (490)
Q Consensus 472 m~~~ 475 (490)
+...
T Consensus 843 Ltnn 846 (1081)
T KOG1538|consen 843 LTNN 846 (1081)
T ss_pred hhhh
Confidence 7644
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.11 E-value=0.21 Score=45.38 Aligned_cols=284 Identities=15% Similarity=0.031 Sum_probs=137.9
Q ss_pred cHHHHHHHHHc--CCCchhHHHHHHHhhhCCCCCCcccHHHHHHHH--hccCCcHHHHHHHHHHHHhCCCCchhH--HHH
Q 042265 78 SYNTIIRAHTL--FSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRAC--SQLCSHSLAQTIHSQVLKLGFICDVFV--LNS 151 (490)
Q Consensus 78 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 151 (490)
-|..|-.++.. .|+-..|.++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|.. .|.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 45555554443 35555565555544322 334444455554432 334777777777777764 222221 112
Q ss_pred HHHHHHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCee--hHHHHHHHHH--
Q 042265 152 LMHVYCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDLAHARQLFDRMP-----FRDAV--SWGTLVAGYA-- 219 (490)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~--~~~~l~~~~~-- 219 (490)
|.----+.|+.+.|..+-++... | -.-.+...+...+..|+++.|+++++.-. +++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22223345666666666555522 2 22355566666666677777766665433 22211 1111211111
Q ss_pred -hcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042265 220 -QSDQCEEAIQLFCNMMDLDIKPDNIA-LVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTA 297 (490)
Q Consensus 220 -~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 297 (490)
-.-+...|...-.+..+ +.||... -.....++.+.|+..++-.+++.+-+....| .+.... .+.+.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~lY--~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALLY--VRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHHH--HHhcCCCcHHH
Confidence 11234444444333333 3444432 2233456667777777777777776664333 222221 23344432221
Q ss_pred H----HHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-ccCcHHHHHHHHHHhHH
Q 042265 298 I----EIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS-HAGLVDEARKLFDEMES 372 (490)
Q Consensus 298 ~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 372 (490)
. +-++.|...+..+......+-...|++..|..--+.... ..|....|..+.+.-. ..||-.++...+.+..+
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1 223444445555555556666666666666555444443 3555556655555432 34666666666666655
Q ss_pred h
Q 042265 373 V 373 (490)
Q Consensus 373 ~ 373 (490)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 3
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.025 Score=49.41 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc---CCHHHHHHHHhhCC-CCC-CHHHH
Q 042265 341 KPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA---GLIEEALEMIKKMP-MGG-DVFVW 415 (490)
Q Consensus 341 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~-~~~-~~~~~ 415 (490)
+-|...|..|...|...|+.+.|..-|....+ -.++++..+..+..++... ....++..+|+++. ..| ++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34778899999999999999999999999988 4566677777777766533 23457888998865 333 88888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 416 SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 416 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
..|...+...|++.+|...++.|++..|.+. ....++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHHH
Confidence 8899999999999999999999999777766 4444443
No 220
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.08 E-value=0.31 Score=46.94 Aligned_cols=179 Identities=15% Similarity=0.085 Sum_probs=120.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 042265 277 DSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK--PDGVTILGAL 351 (490)
Q Consensus 277 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~ 351 (490)
+..+|...+..-.+.|+.+.+.-+|+...-| -...|-..+.-....|+.+.|..++....+-.++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567788888888899999999999988765 2334555555555568888888887766554332 2223333322
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCCCc-hHHHHHHhhhhhcCCHHHHH---HHHhhCCC-CCCHHHHHH----HHHH-
Q 042265 352 VGCSHAGLVDEARKLFDEMESVYGVSKEL-KHYGCMADLLGRAGLIEEAL---EMIKKMPM-GGDVFVWSG----LLGG- 421 (490)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~-~~~~~~~~~----l~~~- 421 (490)
+...|++..|..+++.+.+. . |+. ..-..-+....+.|..+.+. .++..... +.+..+... ..+.
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 34578999999999999985 3 443 33333455567888888887 55544332 112222222 2222
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
+.-.++.+.|..++.++.+..|++...|..+.......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 445689999999999999999999988888888776655
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.01 E-value=0.0024 Score=43.92 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=50.2
Q ss_pred hhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 042265 388 DLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
..|.+.+++++|.++++.+.. .| ++..+......+...|++++|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 457788888888888888653 34 777888888889999999999999999999999877443
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.94 E-value=0.21 Score=42.84 Aligned_cols=168 Identities=17% Similarity=0.088 Sum_probs=90.7
Q ss_pred HhcCCHHHHHHHHhccCCCC------eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc------
Q 042265 289 AKCGYINTAIEIFESSQEKN------LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH------ 356 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~------ 356 (490)
.+.|++++|.+.|+.+.... ..+.-.++.++.+.+++++|+...++....-.......|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 34566666666666665421 123334455666777777777777777664322222334444444331
Q ss_pred -cCcH---HHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042265 357 -AGLV---DEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAE 432 (490)
Q Consensus 357 -~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 432 (490)
..|. ..|..-|+.+..+ .|.+..+ .+|..-+..+... -...=..+.+.|.+.|.+..|.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya--------------~dA~~~i~~~~d~-LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNSRYA--------------PDAKARIVKLNDA-LAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCCcch--------------hhHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHH
Confidence 1222 2334444444442 2222211 1111111111100 0111223456688999999999
Q ss_pred HHHHHHHhhCCCCCc---hHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 433 AAAEHVMKLKPEDGG---VYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 433 ~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
.-++++++-.|+.+. .+..+..+|.+.|..++|.+.-+-+.
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999999996665543 55567788999999999888755443
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.015 Score=52.72 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=78.8
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMP--MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
.++..+..++.+.+++.+|++.-++.. ..+|...+..-..++...|+++.|+..|+++++++|.|..+-..+..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 356778888999999999999888754 334888888889999999999999999999999999999888888877777
Q ss_pred cCChHH-HHHHHHHHhcC
Q 042265 459 ADRWED-VVKIRRSLDAG 475 (490)
Q Consensus 459 ~g~~~~-A~~~~~~m~~~ 475 (490)
..++.+ ..++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 666544 47888888654
No 224
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.58 Score=46.89 Aligned_cols=166 Identities=10% Similarity=0.022 Sum_probs=109.2
Q ss_pred CCCChhHHHHhhccCCCCCcc----cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTF----SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQT 132 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 132 (490)
+..-++-|..+.+.-.- +.. ......+.+-+.|++++|...|-+-... +.| ..++.-+....+...-..
T Consensus 346 kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~ 418 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTS 418 (933)
T ss_pred HhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHH
Confidence 56777777777765432 222 2334445667889999999988876643 223 345666777777888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCc-hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehH
Q 042265 133 IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDV-VSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSW 211 (490)
Q Consensus 133 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (490)
+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+...+-.. .-....+..+.+.+-.++|..+-.+... +....
T Consensus 419 YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl 496 (933)
T KOG2114|consen 419 YLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVL 496 (933)
T ss_pred HHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHH
Confidence 9999999984 5566667899999999999998888877652211 1244556666666666666655544433 22222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 042265 212 GTLVAGYAQSDQCEEAIQLFCNM 234 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~m 234 (490)
. -.+-..+++++|++++..+
T Consensus 497 ~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 497 D---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred H---HHHHHhcCHHHHHHHHhcC
Confidence 2 2334567788888887765
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.74 E-value=0.1 Score=50.61 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=103.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHhh----ccCcHHHHHHHHHHhHHhhCCCCCchHH
Q 042265 314 AMLVGLAMHGLGRLSLVYFSRMIEAR-IKPDG-----VTILGALVGCS----HAGLVDEARKLFDEMESVYGVSKELKHY 383 (490)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 383 (490)
.+++...-.|+-+.+++.+.+..+.+ +.-.. ..|...+..++ ...+.+.|.++++.+.+. .|.+....
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444445566666666666554422 21111 12333333332 246788899999999884 44344333
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH-HHHH
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMPMGG------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVL-ADVY 456 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~ 456 (490)
-.-.+.+...|++++|++.|++..... ....+-.++..+.-..++++|...+.++.+...-+...|..+ +.++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 444566778899999999999755321 444566677778889999999999999999766666566544 4455
Q ss_pred HhcCCh-------HHHHHHHHHHhc
Q 042265 457 ANADRW-------EDVVKIRRSLDA 474 (490)
Q Consensus 457 ~~~g~~-------~~A~~~~~~m~~ 474 (490)
...|+. ++|.++++++..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 678888 889999888754
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.73 E-value=0.23 Score=42.12 Aligned_cols=60 Identities=20% Similarity=0.092 Sum_probs=37.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIK--PDNIALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
.....+...|++++|.+.|+.+...... -.......++.++.+.|+++.|...++...+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455566777788888888777764211 11234455666777777777777777777665
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0091 Score=54.15 Aligned_cols=64 Identities=8% Similarity=-0.055 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 412 VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
...+..+..++.+.+++..|++..+++++.+|+|..+++.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3467788889999999999999999999999999999999999999999999999999999764
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.61 E-value=0.047 Score=42.34 Aligned_cols=86 Identities=20% Similarity=0.157 Sum_probs=58.5
Q ss_pred hhhcCCHHHHHHHHhhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCC
Q 042265 390 LGRAGLIEEALEMIKKMPMG-G----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV---YKVLADVYANADR 461 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~ 461 (490)
..+.|++++|.+.|+.+..+ | ....-..++.+|.+.+++++|...+++.+++.|.++.+ +...+-++.+...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 34667777777777766532 2 45566668888889999999999999999988887743 3344444444443
Q ss_pred ---------------hHHHHHHHHHHhcC
Q 042265 462 ---------------WEDVVKIRRSLDAG 475 (490)
Q Consensus 462 ---------------~~~A~~~~~~m~~~ 475 (490)
..+|..-|++++++
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 66777777777654
No 229
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.91 Score=45.00 Aligned_cols=382 Identities=11% Similarity=-0.011 Sum_probs=172.5
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC------CC------Ccc-----cH
Q 042265 17 HQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP------YP------STF-----SY 79 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~------~~~-----~~ 79 (490)
+.|-+|+...+ -+ -.|..-..|+..-.|. -.+. +.-++++-.++-+.+. .+ +.. +-
T Consensus 368 ~aV~~CI~aA~-~e--f~pe~QK~LL~AAsfG---k~~l-~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~ 440 (829)
T KOG2280|consen 368 KAVDDCIEAAC-DE--FQPEEQKSLLRAASFG---KASL-RTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSE 440 (829)
T ss_pred HHHHHHHHHhh-hc--cCHHHHHHHHHHHhhc---cccc-ccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhch
Confidence 45666776666 45 6677777777665522 2222 4455555544443321 11 111 22
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCc--HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSH--SLAQTIHSQVLKLGFICDVFVLNSLMHVYC 157 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 157 (490)
..+|+-+...+.+..|+++-+.+...-... ...|..+...+.+..+. +.+.+..++-..... -....|..+.+...
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 345666677777777777776665321111 34555555555544321 222222222222211 23345566666666
Q ss_pred hcCChHHHHHHHHhcccC--------CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CeehHHHHHHHHHhcCChhHHH
Q 042265 158 VFHRLRDAQELFDEILYR--------DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR-DAVSWGTLVAGYAQSDQCEEAI 228 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 228 (490)
..|+.+-|..+++.=... +..-+..-+.-..+.||.+-...++-.+... +...+ +.-..+...|.
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l------~~~l~~~p~a~ 592 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL------FMTLRNQPLAL 592 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH------HHHHHhchhhh
Confidence 777777777776543211 2223333444445555555555544433211 11111 11112233344
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH-HHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHH--------
Q 042265 229 QLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIH-RYIELN-QIRVDSFLSTGLVDFYAKCGYINTAI-------- 298 (490)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~-------- 298 (490)
.+|.+..+.. |.. .+-..|....+......+. +..... .+.+-..........+.+.....-..
T Consensus 593 ~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 593 SLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred HHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 4444433211 000 0111121212221111111 110000 01111111222233333332211111
Q ss_pred --HHHhccCC-----CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 299 --EIFESSQE-----KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 299 --~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
.+.+.+.. -...+.+--+.-+...|+..+|.++-.+.+ .||...|..-+.+++..++|++-+++-+...
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 11111111 112233444455566677777766655543 4666666666777777777766554443322
Q ss_pred HhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042265 372 SVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAE 436 (490)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 436 (490)
++.-|.-.+..|.+.|+.++|.+++.+....+ ....+|.+.|++.+|.+..-
T Consensus 743 -------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 -------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred -------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 13445556667777777777777777666442 34555666666666655443
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.44 E-value=0.019 Score=49.28 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=85.7
Q ss_pred ChhHHHHhhccCC--CCCcccHHHHHHHHHc-----CCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccC-------
Q 042265 60 PLSYALSIFNNIP--YPSTFSYNTIIRAHTL-----FSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLC------- 125 (490)
Q Consensus 60 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------- 125 (490)
++--....|...+ +.|-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 49 ~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 49 SLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred cccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHH
Confidence 3444556666666 4677788888877654 3566777788899999999999999999999875532
Q ss_pred ---------CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH-HHHHHHHhc
Q 042265 126 ---------SHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR-DAQELFDEI 172 (490)
Q Consensus 126 ---------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~ 172 (490)
+-+-++.++++|...|+.||..+-..|++++.+.+..- +..+++-.|
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23448899999999999999999999999999887643 344444444
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.027 Score=48.58 Aligned_cols=99 Identities=19% Similarity=0.094 Sum_probs=63.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC---chHHHHHHhhhhhcCCHHHHHHHHhhCC----CCC-CHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKE---LKHYGCMADLLGRAGLIEEALEMIKKMP----MGG-DVFVWSG 417 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~ 417 (490)
.|+..+.. .+.|++..|..-|....+. .+.+ +..+-.|...+...|++++|..+|..+. ..| -+..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 56665554 3567788888888887773 3332 2334456777777777777777665532 222 4566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
+.....+.|+.++|...|+++.+..|..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 666677777777777777777777776553
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.27 E-value=0.054 Score=41.58 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 339 RIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 339 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
...|+..+..+++.+|+..|++..|.++.+.+.+.++++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4678888889999999889999999999999988888777777777776643
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.25 E-value=1 Score=42.09 Aligned_cols=149 Identities=14% Similarity=-0.028 Sum_probs=82.5
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC--chH
Q 042265 308 NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP---DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE--LKH 382 (490)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 382 (490)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|...++..... ....+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34567777888888888888888888877643111 2233334445566778888888888877762 11111 111
Q ss_pred HHHHHhhhhhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 383 YGCMADLLGRAGLIEEALEM-IKKMPMGGDVFVWSGLLGGCRIH------GNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
...+...+.. ..+..... ........-...+..+...+... +..+++...|+++.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000122333344444444 788999999999999999888888888877
Q ss_pred HHhc
Q 042265 456 YANA 459 (490)
Q Consensus 456 ~~~~ 459 (490)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=96.19 E-value=0.086 Score=49.33 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=101.4
Q ss_pred ehH--HHHHHHHHHc-----CChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHhhc---------cCcHHHHHHHHHHhH
Q 042265 310 FTW--NAMLVGLAMH-----GLGRLSLVYFSRMIEA-RIKPD-GVTILGALVGCSH---------AGLVDEARKLFDEME 371 (490)
Q Consensus 310 ~~~--~~l~~~~~~~-----~~~~~A~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 371 (490)
..| ...+.+.... ...+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 2346677888888722 24554 3455555444321 234556677777777
Q ss_pred HhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 042265 372 SVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
+ -.+.|+.....+..++.-.|+++.|..+|++.. ..| .+.+|......+.-.|+.++|.+.++++++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 6 556677777777777777888899999998754 334 666777777777788999999999999999888765432
Q ss_pred H--HHHHHHHhcCChHHHHHHHH
Q 042265 450 K--VLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 450 ~--~l~~~~~~~g~~~~A~~~~~ 470 (490)
. ..+..|+.. ..++|++++-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHh
Confidence 2 233345444 4566766653
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.55 Score=41.22 Aligned_cols=144 Identities=16% Similarity=0.108 Sum_probs=69.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
....|+..+|...|+........ +......+..+|...|+.+.|..++..+-.. --.........-+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCC
Confidence 34555666666666655554222 2334444555666666666666666655432 111111111122333333333333
Q ss_pred HHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHHHHHHHHHhcCChHH
Q 042265 399 ALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYKVLADVYANADRWED 464 (490)
Q Consensus 399 A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~ 464 (490)
...+-++....| |...-..+...+...|+.+.|.+.+-.+++ ..-.+..+-..++..+.-.|.-+.
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 333333333334 555555555666666666666666655555 223334455555555555554333
No 236
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.16 E-value=0.019 Score=32.24 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
..+..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456777788888888888888888888888864
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=96.16 E-value=0.1 Score=41.50 Aligned_cols=89 Identities=8% Similarity=-0.006 Sum_probs=48.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
+...|++++|..+|+-+...+.. +..-+..|..++-..+++++|...|...... ...|+..+-....+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccchHHHHHHHhCCHHH
Confidence 34556666666666665553322 2333444444555566666666666665542 12333334445566666666666
Q ss_pred HHHHHhhCCCCC
Q 042265 399 ALEMIKKMPMGG 410 (490)
Q Consensus 399 A~~~~~~~~~~~ 410 (490)
|...|+....+|
T Consensus 124 A~~~f~~a~~~~ 135 (165)
T PRK15331 124 ARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHhCc
Confidence 666666555443
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.14 E-value=0.94 Score=41.88 Aligned_cols=29 Identities=14% Similarity=-0.020 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
-..+.+++.++.-.|+.++|.+.++++.+
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 34445555555556666666666666554
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.11 E-value=0.014 Score=32.78 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888888899988888888886
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.11 E-value=0.057 Score=43.10 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCChhhH
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIEL-----NQIRVDSFLS 281 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 281 (490)
+...++..+...|++++|..+++.+.... +.+...+..+|.++...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455666777777888888777777754 44666777778888888888887777776543 3767766544
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.10 E-value=0.41 Score=45.86 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChh
Q 042265 146 VFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCE 225 (490)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 225 (490)
....+.++..+-+.|..+.|+++-..- ..-.....+.|+++.|.++.++.. +...|..|.....+.|+++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence 334566666666666666666553221 123344456677777776666554 4557777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 042265 226 EAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFE 302 (490)
Q Consensus 226 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 302 (490)
-|.+.|.+..+ +..|+-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..+++.
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 77777766432 44455556666776666666666555541 3334444445566666555544
No 242
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.08 E-value=0.02 Score=39.85 Aligned_cols=59 Identities=19% Similarity=0.123 Sum_probs=34.1
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-------C-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-------M-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
+++.+...|...|++++|+..|++.. . .+ ...++..+...+...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555444321 0 11 245667777777888888888888877765
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.08 E-value=0.43 Score=36.22 Aligned_cols=141 Identities=9% Similarity=0.028 Sum_probs=86.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+.+.+.+-. ....++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc---
Confidence 34567888888888877663 255566777766666666666667777665532222211 11223444443332
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
+.......+.....+|+-+.-.+++..+.+-+..+|.....++.+|.+.|+..++.+++++.-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455666777888999999999999887644456678999999999999999999999999888874
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.25 Score=42.82 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=27.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPED---GGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
|..++...|++++|...|..+.+-.|++ +.++.-|+....+.|+.++|...|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4445555555555555555555533332 23444445555555555555555555443
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.92 E-value=0.55 Score=42.29 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=56.2
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCC----CchHHHHHHhhhhhcCCHHHHHHHHhh-------CCCCC-----CHH
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSK----ELKHYGCMADLLGRAGLIEEALEMIKK-------MPMGG-----DVF 413 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~-----~~~ 413 (490)
+..++...+.++++.+.|+...+--.-.. ...++-.|...|.+..++++|.-+..+ ....+ ...
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33444444555555555555443211111 123445555555555555554433322 11111 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCc----hHHHHHHHHHhcCChHHHHHHHHH
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGG----VYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
+...+.-++...|...+|.+..+++.+ +..-|.. ....+++.|...|+.+.|+.-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 333344455566666666666666655 2222222 233555666666666655555443
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.39 Score=42.12 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHH---HH
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSG---LL 419 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~ 419 (490)
....+... ......|+..+|...|+.... -.+-+...-..++.+|...|+.+.|..++..++..-...-+.. -+
T Consensus 134 ~e~~~~~~-~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 134 EEEALAEA-KELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHHHHh-hhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 33344333 335678999999999999988 4555567777899999999999999999999885532222222 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..+.+.....+.. -+++-...+|+|...-..++..+...|+.++|.+.+=.+.++
T Consensus 211 ~ll~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 211 ELLEQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2333333222222 233334578999999999999999999999999987766654
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=1.1 Score=45.03 Aligned_cols=176 Identities=12% Similarity=0.065 Sum_probs=107.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 042265 180 CNTLIDGYVKAGDLAHARQLFDRMPFRD---AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL 256 (490)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 256 (490)
...-+..+.+...++-|..+-+.-..+. ..........+.+.|++++|...|-+-+.. +.|. .++.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3445566666666777766665543221 112333344556778888888888766543 2332 244455566
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCe-ehHHHHHHHHHHcCChHHHHHHHHHH
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL-FTWNAMLVGLAMHGLGRLSLVYFSRM 335 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m 335 (490)
..+.+-..+++.+.+.| -.+......|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 66666677788888877 34556667788888888888888888877663221 12455566666666666666555443
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 042265 336 IEARIKPDGVTILGALVGCSHAGLVDEARKLFDEM 370 (490)
Q Consensus 336 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (490)
.. +......+++ ..+++++|.++++.+
T Consensus 490 ~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred cc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 22 3334444433 567888888887665
No 248
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.86 E-value=0.12 Score=39.65 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCChhhHHHHHH
Q 042265 238 DIKPDNIALVSALSACARLGELEQGKNIHRYIELN-QIRVDSFLSTGLVD 286 (490)
Q Consensus 238 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 286 (490)
...|+..+..+++.+++..|++..|.++.+...+. +++.+..+|..|++
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35677778888888888888888888877776654 66666677776665
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.85 E-value=0.27 Score=38.26 Aligned_cols=115 Identities=12% Similarity=-0.009 Sum_probs=55.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIK--PDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA 393 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (490)
.....+.|++++|.+.|+.+...-.. -....-..++.++.+.+++++|...+++..+.+...|+. -|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 33444556666666666666554111 122334445555666666666666666666543333332 233333333222
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 394 GLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...+..+.-+- ..=...+....|..-|+++++..|++.
T Consensus 96 ~~~~~~~~~~~---------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSLQSFF---------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHHhhhc---------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 22111111111 000112235688888999999999875
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.85 E-value=0.68 Score=36.52 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCH
Q 042265 114 FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDL 193 (490)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (490)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+..+.++. ..+.......++.|.+.+-+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3455555555566666666666666655 355566666666666543 2333333331 22333334455555555555
Q ss_pred HHHHHHHhhC
Q 042265 194 AHARQLFDRM 203 (490)
Q Consensus 194 ~~a~~~~~~~ 203 (490)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555554443
No 251
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.08 Score=49.47 Aligned_cols=62 Identities=11% Similarity=0.008 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc----hHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKEL----KHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
+...+..+..+|.+.|++++|...|++..+. .|+. ..|..+..+|...|+.++|++.+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666666666666665542 2322 235556666666666666666666544
No 252
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.72 E-value=2.2 Score=41.41 Aligned_cols=81 Identities=7% Similarity=-0.023 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC------CCcccHHHHHHH
Q 042265 12 TIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY------PSTFSYNTIIRA 85 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~ 85 (490)
..+.+..|++.-+.. ++ .+..+|...+..+. . ..|+.+...+.|++... -+...|...|..
T Consensus 94 ~~~~s~~Vfergv~a--ip--~SvdlW~~Y~~f~~-n--------~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 94 NAENSVKVFERGVQA--IP--LSVDLWLSYLAFLK-N--------NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred hHHHHHHHHHHHHHh--hh--hHHHHHHHHHHHHh-c--------cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 344455666666654 44 77778888777777 3 66777777777776532 345567788887
Q ss_pred HHcCCCchhHHHHHHHhhhC
Q 042265 86 HTLFSSPLNAVVLFSQMRTV 105 (490)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~ 105 (490)
-..++++.....+|++..+.
T Consensus 161 en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccccHHHHHHHHHHHHhh
Confidence 77888888888888887763
No 253
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.70 E-value=2.8 Score=42.54 Aligned_cols=52 Identities=12% Similarity=-0.050 Sum_probs=23.6
Q ss_pred HhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 387 ADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
+....+.++++.+...+..|.... ...-..=+..++...|+.++|...|+++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333335555555555555543211 2222223344444455555555555554
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.67 E-value=1.1 Score=40.53 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=56.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-------C--CeehHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHHHH-
Q 042265 284 LVDFYAKCGYINTAIEIFESSQE-------K--NLFTWNAMLVGLAMHGLGRLSLVYFSRMIE----ARIKPDGVTILG- 349 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~~- 349 (490)
+..+....+.++++++.|+...+ + ...++-.|...|.+..++++|.-+..+..+ .++.--...|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444444555555555544321 1 223455555556666666665554444322 121111111221
Q ss_pred ----HHHHhhccCcHHHHHHHHHHhHHh---hCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhh
Q 042265 350 ----ALVGCSHAGLVDEARKLFDEMESV---YGVSK-ELKHYGCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 350 ----l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
+.-++...|....|.+.-++..+. .|..+ .......+.+.|...|+.+.|+.-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223344555555555555544332 12222 223344566667777777776666654
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=1.2 Score=37.93 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=23.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----hCCCCCchHHHHHHHHHhcCChHHHHHH
Q 042265 419 LGGCRIHGNVEIAEAAAEHVMK----LKPEDGGVYKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (490)
+-.+.-..++..|...++..-+ ..|.+..+...|+.+| ..|+.+++..+
T Consensus 197 ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3334444455555555555433 3344444555555444 44454444443
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.55 E-value=0.82 Score=43.81 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=109.7
Q ss_pred HHHHHcCCCchhHHHHHH--HhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 042265 83 IRAHTLFSSPLNAVVLFS--QMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH 160 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 160 (490)
.....-+|+++++.++.+ ++.. .+ +....+.++..+.+.|..+.|+++-. |+. .-.+...+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcC
Confidence 344566788998877775 2221 12 24457888888899999999987643 332 2345567899
Q ss_pred ChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 042265 161 RLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIK 240 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 240 (490)
+++.|.++.++.. +...|..|.....+.|+++-|++.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|
T Consensus 333 ~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-- 403 (443)
T PF04053_consen 333 NLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG-- 403 (443)
T ss_dssp -HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9999998877765 66699999999999999999999999976 47788888999999988888888877766
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHH
Q 042265 241 PDNIALVSALSACARLGELEQGKNIHRY 268 (490)
Q Consensus 241 p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 268 (490)
-++....++.-.|+.++..+++..
T Consensus 404 ----~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ----DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 255666677777888888777653
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=95.54 E-value=0.84 Score=43.00 Aligned_cols=144 Identities=14% Similarity=0.028 Sum_probs=95.2
Q ss_pred CHHHHHHHHhccC---CCC---eehHHHHHHHHHH---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 042265 293 YINTAIEIFESSQ---EKN---LFTWNAMLVGLAM---------HGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357 (490)
Q Consensus 293 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 357 (490)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.+..++..+.+ .-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888898877 434 3345444443322 123456677777777765 33777777777777788
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh-CCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKK-MPMGG---DVFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
++.+.|...|++... -.+.....|........-.|+.++|.+.+++ +...| -.......+..|+.+ ..+.|+.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 889999999999986 3333445566666667778999999999998 66666 333444444455554 4677777
Q ss_pred HHHHHHh
Q 042265 434 AAEHVMK 440 (490)
Q Consensus 434 ~~~~~~~ 440 (490)
++-+-.+
T Consensus 429 ~~~~~~~ 435 (458)
T PRK11906 429 LYYKETE 435 (458)
T ss_pred HHhhccc
Confidence 7765444
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.59 Score=37.43 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=72.5
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCch-HHHHH-
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGV-TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELK-HYGCM- 386 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l- 386 (490)
..|...++ +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.. ...|... -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 34443333 356677788888888887765432211 1111223345677888888888887754 2222221 11111
Q ss_pred -HhhhhhcCCHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 387 -ADLLGRAGLIEEALEMIKKMPMGG---DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 387 -~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.-.+...|.+++...-.+.+...+ -...-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 223456677777776666655333 233445566666677777777777777666
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.49 E-value=2.7 Score=40.95 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=33.8
Q ss_pred CHHHHHHHHhhCCC--CCeehHHH-HHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCChHHHHHH
Q 042265 192 DLAHARQLFDRMPF--RDAVSWGT-LVAGYAQSDQCEEAIQLFCNMMDLD---IKPDNIALVSALSACARLGELEQGKNI 265 (490)
Q Consensus 192 ~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~ 265 (490)
+.+.|.++++.+.. |+...|.. -.+.+...|+.++|++.|+...... .+.....+--+..++....++++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 44445555554443 33322222 2233444455555555555433210 011122233344444455555555555
Q ss_pred HHHHHHc
Q 042265 266 HRYIELN 272 (490)
Q Consensus 266 ~~~~~~~ 272 (490)
+..+.+.
T Consensus 328 f~~L~~~ 334 (468)
T PF10300_consen 328 FLRLLKE 334 (468)
T ss_pred HHHHHhc
Confidence 5555544
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.35 Score=42.97 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=20.8
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
..|-+++|++.-++..+ -.+.|...-..+...+.-.|++.++.+...+
T Consensus 187 E~g~y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HhccchhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 44444444444444443 2222333333444444444444444444443
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.40 E-value=0.085 Score=39.76 Aligned_cols=89 Identities=26% Similarity=0.186 Sum_probs=49.7
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C--C---HHHHHHHHHHHHhcC
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G--D---VFVWSGLLGGCRIHG 426 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~---~~~~~~l~~~~~~~~ 426 (490)
+....|+.+.|++.|.+... -.+.....||.-..++.-.|+.++|+.-+++...- + . -..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556666666666666665 34455566666666666666666666666553311 1 1 112333333355566
Q ss_pred CHHHHHHHHHHHHhhCC
Q 042265 427 NVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 427 ~~~~a~~~~~~~~~~~p 443 (490)
+.+.|..-|+.+.++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 66666666666666544
No 262
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.39 E-value=1.2 Score=36.07 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=15.4
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCCcH
Q 042265 99 FSQMRTVSIPPDFYSFPFLLRACSQLCSHS 128 (490)
Q Consensus 99 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 128 (490)
++.+.+.+++|+...+..+++.+.+.|++.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333444455555555555555555555443
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.19 Score=44.56 Aligned_cols=160 Identities=10% Similarity=0.038 Sum_probs=117.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHH----HHHhhhhhcCC
Q 042265 320 AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYG----CMADLLGRAGL 395 (490)
Q Consensus 320 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 395 (490)
--+|+..+|-..++++.+. .+-|...+...=.+|...|+...-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888888889998876 344667777777888999999999999998887 4556665444 44455668999
Q ss_pred HHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----CchHHHHHHHHHhcCChHHHHHHH
Q 042265 396 IEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED----GGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 396 ~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+++|.+.-++...-+ |...-.+....+...|+.+++.++..+-...-... ...|-..+..+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998865333 77777778888889999999999988765522111 123446666777889999999999
Q ss_pred HHHhcCCCCCCCc
Q 042265 470 RSLDAGKIKKNAG 482 (490)
Q Consensus 470 ~~m~~~~~~~~~~ 482 (490)
+.=.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8766555555544
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.32 E-value=2.2 Score=40.55 Aligned_cols=146 Identities=9% Similarity=0.094 Sum_probs=69.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
.+|.-.-+..+++.-++.-.+.++ +.||..+.-.++ +--......++.+++++..+.+-. . +.+..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-~----------lg~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-S----------LGKSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-h----------hchhh
Confidence 334444455556666666666555 345543322222 122344567778888777665410 0 00000
Q ss_pred CHHHHHHHHhccCCCC----eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 293 YINTAIEIFESSQEKN----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK-PDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 293 ~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
..+..-..++....++ +.+-..+..++-+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0000000111111111 222233444555667777777777776653211 12234555666667777777777766
Q ss_pred HHhHH
Q 042265 368 DEMES 372 (490)
Q Consensus 368 ~~~~~ 372 (490)
.+..+
T Consensus 319 ~kYdD 323 (539)
T PF04184_consen 319 AKYDD 323 (539)
T ss_pred HHhcc
Confidence 66543
No 265
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.31 E-value=7 Score=44.63 Aligned_cols=310 Identities=10% Similarity=-0.018 Sum_probs=174.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhc----ccC--CchhHHHHHHHHHhcCCHHHHHHHHhh-CCCCCeehHHHHHHHHHhcCC
Q 042265 151 SLMHVYCVFHRLRDAQELFDEI----LYR--DVVSCNTLIDGYVKAGDLAHARQLFDR-MPFRDAVSWGTLVAGYAQSDQ 223 (490)
Q Consensus 151 ~li~~~~~~g~~~~A~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 223 (490)
.+..+-.+++.+.+|...+++- .+. ....+-.+...|+..+++|...-+... ...+ ....-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhcc
Confidence 4445666788899999999883 111 112333344478888888888777763 2222 23334555677899
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHh
Q 042265 224 CEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLST-GLVDFYAKCGYINTAIEIFE 302 (490)
Q Consensus 224 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~ 302 (490)
+..|...|+.+.+.+ ++...+++-++......+.++......+-..... .+....++ .=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998865 3446678888887778888877776555444332 33333333 33445567788887777766
Q ss_pred ccCCCCeehHHHH--HHHHHHcCChH--HHHHHHHHHHHCCCCCC---------HHHHHHHHHHhhccCcHHHHHHHHHH
Q 042265 303 SSQEKNLFTWNAM--LVGLAMHGLGR--LSLVYFSRMIEARIKPD---------GVTILGALVGCSHAGLVDEARKLFDE 369 (490)
Q Consensus 303 ~~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (490)
..+..+|... +..+.+...-+ .-.+..+.+++.-+.|- ...|..++....-. +.+.-.
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~----- 1613 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSI----- 1613 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHH-----
Confidence 4455555554 23333322211 11123333333211110 01222222221100 001111
Q ss_pred hHHhhCCCCCch------HHHHHHhhhhhcCCHHHHHHHHh----h--CC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 370 MESVYGVSKELK------HYGCMADLLGRAGLIEEALEMIK----K--MP---MGGDVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 370 ~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~----~--~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
....+..++.. .|..-+..-....+..+-+--++ . |. ...-..+|....+.....|+++.|...
T Consensus 1614 -~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 -EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred -HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11112222221 11111111111111222111111 1 12 112667899999999999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 435 AEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
+-.+.+..++ .++...++.+...|+...|+.++++..+...
T Consensus 1693 ll~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9998886653 5789999999999999999999999876543
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.30 E-value=1.3 Score=36.92 Aligned_cols=158 Identities=11% Similarity=0.063 Sum_probs=68.5
Q ss_pred eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 309 LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++..|.+-+...-+ ..+.|+ |..+--
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ--~D~~DP--fR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQ--DDPNDP--FRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHh--cCCCCh--HHHHHH
Confidence 3456666666666666666666666665543221111111111 22345666666655555444 222233 111111
Q ss_pred hh-hhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHhc
Q 042265 389 LL-GRAGLIEEALEMI-KKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED-------GGVYKVLADVYANA 459 (490)
Q Consensus 389 ~~-~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 459 (490)
-+ ...-++.+|..-+ ++.... |..-|...+-.+.- |+.. .+.+++++.....++ ..+|..|++-+...
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~-d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKS-DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhc-cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 11 1223344444333 223222 33333333322211 1111 122333333322222 13666777777777
Q ss_pred CChHHHHHHHHHHhc
Q 042265 460 DRWEDVVKIRRSLDA 474 (490)
Q Consensus 460 g~~~~A~~~~~~m~~ 474 (490)
|+.++|..+|+....
T Consensus 251 G~~~~A~~LfKLaia 265 (297)
T COG4785 251 GDLDEATALFKLAVA 265 (297)
T ss_pred ccHHHHHHHHHHHHH
Confidence 777777777765543
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.27 E-value=1.7 Score=37.28 Aligned_cols=221 Identities=19% Similarity=0.087 Sum_probs=116.7
Q ss_pred CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042265 222 DQCEEAIQLFCNMMDLDIKP-DNIALVSALSACARLGELEQGKNIHRYIELN-QIRVDSFLSTGLVDFYAKCGYINTAIE 299 (490)
Q Consensus 222 g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 299 (490)
+....+...+.......... ....+......+...++...+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555554432211 2345556666666667777776666665542 224444555556666666666666766
Q ss_pred HHhccCCC--Ce-ehHHHHHH-HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 300 IFESSQEK--NL-FTWNAMLV-GLAMHGLGRLSLVYFSRMIEARI--KPDGVTILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 300 ~~~~~~~~--~~-~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
.+...... +. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~- 195 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK- 195 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh-
Confidence 66665542 11 22222233 56666777777777766644211 01222333333334456666666666666665
Q ss_pred hCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 374 YGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKMPMG-GD-VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 374 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
..+. ....+..+...+...++++.|...+...... |+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 -LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2233 3455555666666666666666666554322 22 333444444444555566666666666665554
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.24 E-value=0.83 Score=34.78 Aligned_cols=137 Identities=10% Similarity=0.050 Sum_probs=71.4
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC-CchhHHHHHHHHHhcCCHHHHHHHHh
Q 042265 123 QLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR-DVVSCNTLIDGYVKAGDLAHARQLFD 201 (490)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 201 (490)
-.|..++..++..+...+. +..-+|-+|--....-+-+-..++++.+-+. |.. .+|++......+-
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis----------~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS----------KCGNLKRVIECYA 80 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------G-S-THHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch----------hhcchHHHHHHHH
Confidence 3466666666666665532 3333333333333334444445555444221 221 2333333333333
Q ss_pred hCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 042265 202 RMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQI 274 (490)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 274 (490)
.+.. +.......+.....+|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 81 ~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 81 KRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred Hhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3221 33445566777788888888888888876533 67777778888888888888888888888887774
No 269
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.23 E-value=0.072 Score=43.47 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=63.1
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCc-----hHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKEL-----KHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH 425 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 425 (490)
-+.+.|++++|..-|..+... +++.. ..|..-.-++.+.+.++.|+.-..+.. ..| ....+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 366788888888888888873 33332 233334445667777777777665544 233 333344445567777
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
..+++|+.-|+++++.+|....+-...++
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 78888888888888888876544444443
No 270
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.20 E-value=0.18 Score=43.68 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=69.6
Q ss_pred HHHHhhCC--CCCeehHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC------------
Q 042265 197 RQLFDRMP--FRDAVSWGTLVAGYAQ-----SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG------------ 257 (490)
Q Consensus 197 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------ 257 (490)
++.|.... ++|..+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 33444443 3455556555555543 3556666677788888888888888888888765432
Q ss_pred ----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042265 258 ----ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY 293 (490)
Q Consensus 258 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (490)
+-+-++.++++|...|+.||..+-..|++++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 334578899999999999999999999999988775
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.18 E-value=1.8 Score=37.10 Aligned_cols=216 Identities=19% Similarity=0.107 Sum_probs=120.2
Q ss_pred CChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHhccCC-----CCeehHHHHHHHHHHcCChHHHHH
Q 042265 257 GELEQGKNIHRYIELNQIR-VDSFLSTGLVDFYAKCGYINTAIEIFESSQE-----KNLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
+....+...+......... ............+...+++..+...+..... .....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444444311 1245555666666667777776666655432 233445555555666666777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HhhccCcHHHHHHHHHHhHHhhCC--CCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 331 YFSRMIEARIKPDGVTILGALV-GCSHAGLVDEARKLFDEMESVYGV--SKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 331 ~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
.+.........+. ........ .+...|+++.+...+.+.... .. ......+......+...++.+.+...+.+..
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7776665433321 11222222 566677777777777776431 11 1222333334444556677777777776644
Q ss_pred CC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 408 MG-G--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 408 ~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.. + ....+..+...+...++++.|...+.......|.....+..+...+...|.++++...+++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 2 2455666666666777777777777777776666444555555555555667777766665543
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.14 E-value=1.6 Score=36.49 Aligned_cols=178 Identities=13% Similarity=-0.008 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee-hHHHHHH--HHHHcCChHHHHHHHH
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF-TWNAMLV--GLAMHGLGRLSLVYFS 333 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~ 333 (490)
|-++-|..-|.+..... |.-+.+||.|.--+...|+++.|.+.|+...+-|+. -|..+-+ ++--.|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 33444444444444433 444678888888888999999999999988775442 3333322 2334688888887666
Q ss_pred HHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHH-hhhhhcCCHHHHHHHHhhCCCCC-
Q 042265 334 RMIEAR-IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMA-DLLGRAGLIEEALEMIKKMPMGG- 410 (490)
Q Consensus 334 ~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~- 410 (490)
+.-+.. -.|-...|.-+.. ..-++.+|..-+.+=-+ + .|..-|...+ ..|.-.=..+.+.+-...-....
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNT 230 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchH
Confidence 665543 2232233333332 23456666544333222 2 2333343322 22222212222222222222111
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 411 -----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 411 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
-..||--+..-+...|+.++|..+|+-++..+
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 34577788888999999999999999887744
No 273
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.11 E-value=1.3 Score=34.95 Aligned_cols=126 Identities=13% Similarity=0.052 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
...++..+...+.+.....+++.+...+. .+....+.++..|++.+ ..+..+.++. . .+......++..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 34556666666677777777777766653 45566677777776543 2333333331 1 22233344666666
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 392 RAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIH-GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
+.+.++++.-++.++... ...+..+... ++++.|++++++ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 777777777777766432 2223333333 677777777665 334556666665554
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.01 E-value=5.7 Score=41.98 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=18.4
Q ss_pred CCchhHHHHHHHHHHhcC--ChHHHHHHHHhcc
Q 042265 143 ICDVFVLNSLMHVYCVFH--RLRDAQELFDEIL 173 (490)
Q Consensus 143 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 173 (490)
.|+ .....+|..|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 444 44456677777766 6666666666554
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.00 E-value=2.6 Score=37.90 Aligned_cols=18 Identities=17% Similarity=-0.106 Sum_probs=12.4
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042265 422 CRIHGNVEIAEAAAEHVM 439 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~ 439 (490)
+.+.++++.|.++|+-.+
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456777777777777544
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=2.1 Score=36.58 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHhhccCcHHHHHHH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEAR---IKPDGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
|-..|-.+....++..|...++.--+.+ -.-+..+...|+.+| ..||.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3344444555556666666666533321 111334555566655 34555555444
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.89 E-value=0.16 Score=44.74 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
++..++..+...|+++.+...+++..+.+|-+...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 455566666666677777777777777777666677777777777777777776666654
No 278
>PRK09687 putative lyase; Provisional
Probab=94.72 E-value=3 Score=37.37 Aligned_cols=25 Identities=4% Similarity=0.012 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
.+.++.+.|.. +|+..+.++.+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 34444444443 35555555554444
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.69 E-value=1.3 Score=41.91 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=32.6
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 385 CMADLLGRAGLIEEALEMIKKMP-MGG---DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.+..++.+.|+.++|++.++++. ..| ...+...|+.++...+.+.++..++.+.-+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34455556666666666666653 223 333555666666666666666666666544
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.59 E-value=0.26 Score=40.32 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=25.6
Q ss_pred hhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 388 DLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
......|.+++|+..++...... .......-...+...|+-++|...|+++++..
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33444555555555555544432 22222333334555555555555555555543
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.40 E-value=0.1 Score=29.17 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566667777777777777777777777664
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.40 E-value=8.1 Score=40.94 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=78.1
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHH
Q 042265 152 LMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
.++.-.+.|.+.+|+.++..=.+.-...|.+...-+.+.+.+++|.-.|+...+ ..--+.+|...|+|.+|+.+.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a 988 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLA 988 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHH
Confidence 333334455555555544333223334455555555666667777666665442 223456667778888887777
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 042265 232 CNMMDLDIKPDNI--ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK 307 (490)
Q Consensus 232 ~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 307 (490)
.++-.. -+.. +--.|..-+...++.-+|-++..+..+. ....+..|++...|++|.++-....+.
T Consensus 989 ~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~ 1055 (1265)
T KOG1920|consen 989 AQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRD 1055 (1265)
T ss_pred HhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccc
Confidence 665321 1111 1245566666777777777776665433 123444566677777777776655543
No 283
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.31 E-value=0.18 Score=38.12 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=75.1
Q ss_pred HhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCC---chHHHHHHHHHhcC
Q 042265 387 ADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL-KPEDG---GVYKVLADVYANAD 460 (490)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~---~~~~~l~~~~~~~g 460 (490)
.-++...|+.+.|++.|.+.. ..| .+..||.-..++.-+|+.++|..-+++++++ .|... .+|..-+..|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 446778999999999998743 344 8899999999999999999999999999993 44332 35667788899999
Q ss_pred ChHHHHHHHHHHhcCCC
Q 042265 461 RWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 461 ~~~~A~~~~~~m~~~~~ 477 (490)
+-+.|..=|+..-+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998877764
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.23 E-value=0.74 Score=36.88 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=67.3
Q ss_pred HhcCCHHHHHHHHhccCCCCeehHHHHH-----HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH--HhhccCcH
Q 042265 289 AKCGYINTAIEIFESSQEKNLFTWNAML-----VGLAMHGLGRLSLVYFSRMIEARIKPDGV-TILGALV--GCSHAGLV 360 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~--~~~~~g~~ 360 (490)
.+.+..++|+.-|..+.+.+...|..|. ....+.|+...|...|++.-.....|-.. -...|-. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445556666666666555444444332 23456677777777777776544344332 1111211 23456777
Q ss_pred HHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 361 DEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
+......+-+... +.+.....-..|.-+-.+.|++.+|..+|..+.
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 7776666666543 444444445566666677788888888887754
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.15 E-value=3.7 Score=38.36 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKP----EDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
...+|..++..+.+.|+++.|...+.++....+ ..+.+...-++.+...|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566788888888899999999888888887441 1345677778888888988889888887776
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.09 E-value=0.1 Score=29.71 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 448 VYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888743
No 287
>PRK09687 putative lyase; Provisional
Probab=93.90 E-value=4.6 Score=36.23 Aligned_cols=218 Identities=9% Similarity=-0.045 Sum_probs=96.6
Q ss_pred CCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCc----HHHHHHHHHHHHhCCCCchh
Q 042265 72 PYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSH----SLAQTIHSQVLKLGFICDVF 147 (490)
Q Consensus 72 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~~~~ 147 (490)
..+|.......+.++...|. +.+...+..+.+. +|...-...+.++++.|+. +.+...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 34444455555555555543 2233333333322 3333334444445555542 2344444444222 34455
Q ss_pred HHHHHHHHHHhcCCh-----HHHHHHHHh-cccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhc
Q 042265 148 VLNSLMHVYCVFHRL-----RDAQELFDE-ILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQS 221 (490)
Q Consensus 148 ~~~~li~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (490)
+....+.+++..+.. ..+...+.. +..++..+-...+.++++.++.+....+..-+..+|...-...+.++...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 554455554444321 122333322 23334445555555555555543333333334444444444444444443
Q ss_pred C-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042265 222 D-QCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300 (490)
Q Consensus 222 g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 300 (490)
+ +...+...+..+.. .++...-...+.++.+.++. .+...+-...+.+. .....+.++...|.. +|...
T Consensus 187 ~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 187 KYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred CCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHH
Confidence 2 13345555555443 33445555555666666653 33333333333321 233455566666664 45555
Q ss_pred HhccC
Q 042265 301 FESSQ 305 (490)
Q Consensus 301 ~~~~~ 305 (490)
+..+.
T Consensus 257 L~~l~ 261 (280)
T PRK09687 257 LDTLL 261 (280)
T ss_pred HHHHH
Confidence 55444
No 288
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.90 E-value=6.2 Score=37.71 Aligned_cols=176 Identities=11% Similarity=0.028 Sum_probs=100.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALV 352 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 352 (490)
+.|.....+++..+..+-++.-++.+..++.. .+-..|..+++.|..+ ..++-..+|+++.+..+. |...-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44555666667777666666666666666654 3455677777777776 556667777777775432 3333333444
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCc------hHHHHHHhhhhhcCCHHHHHHHHhhCCCCC----CHHHHHHHHHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKEL------KHYGCMADLLGRAGLIEEALEMIKKMPMGG----DVFVWSGLLGGC 422 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~ 422 (490)
.| ..++.+.+..+|.++..+ +.|.. ..|..+...- ..+.+.-..+..++.... -...+..+-.-|
T Consensus 141 ~y-Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KY-EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HH-HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 34 347777777777777663 22311 1333333211 345555555555544221 334445555567
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
....++++|++++.-+++.+-.+.-+...++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 77778888888888777766555545555554443
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.88 E-value=0.13 Score=29.29 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
+|..|...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788889999999999999999655
No 290
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.86 E-value=5.8 Score=37.29 Aligned_cols=129 Identities=15% Similarity=0.052 Sum_probs=68.9
Q ss_pred CCCChhHHHHhhccCCC---CCccc------HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHH--hccC
Q 042265 57 TTDPLSYALSIFNNIPY---PSTFS------YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRAC--SQLC 125 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~---~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~ 125 (490)
+.+++.+|.++|.++-. .+... -+.++++|..+ +.+.....+....+. .| ...|..+..+. -+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 67788888888877642 22222 23555665544 344444444444443 23 33444444432 4567
Q ss_pred CcHHHHHHHHHHHHh--CCC------------CchhHHHHHHHHHHhcCChHHHHHHHHhccc--------CCchhHHHH
Q 042265 126 SHSLAQTIHSQVLKL--GFI------------CDVFVLNSLMHVYCVFHRLRDAQELFDEILY--------RDVVSCNTL 183 (490)
Q Consensus 126 ~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 183 (490)
++++|.+.+..-... +.. +|...-+..+.++...|++.++..+++++.+ -+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777777665553 211 1122224555666777777777777766632 155566665
Q ss_pred HHHHHh
Q 042265 184 IDGYVK 189 (490)
Q Consensus 184 ~~~~~~ 189 (490)
+-.+++
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 544443
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.85 E-value=4.7 Score=36.19 Aligned_cols=16 Identities=0% Similarity=-0.170 Sum_probs=9.4
Q ss_pred HHHcCChHHHHHHHHH
Q 042265 319 LAMHGLGRLSLVYFSR 334 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~ 334 (490)
+.+.++++.|.++|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 3455666666666653
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.60 E-value=0.61 Score=36.43 Aligned_cols=67 Identities=10% Similarity=-0.021 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 393 AGLIEEALEMIKKMP-MGG---DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
.++.+++..+++.+. -+| ...++. ...+...|++++|.++++++.+..+..+..-..++.++.-.|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 455555555555443 122 222222 2224455555555555555555444433222333333333443
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.59 E-value=0.12 Score=41.12 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=53.4
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHH
Q 042265 116 FLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAH 195 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (490)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .....++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35566666777777777777777665556677777777778777777777776663322 333445556666666666
Q ss_pred HHHHHhhCC
Q 042265 196 ARQLFDRMP 204 (490)
Q Consensus 196 a~~~~~~~~ 204 (490)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666655544
No 294
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.49 E-value=0.2 Score=30.10 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=12.2
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHh
Q 042265 115 PFLLRACSQLCSHSLAQTIHSQVLKL 140 (490)
Q Consensus 115 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 140 (490)
..+...+...|++++|.++++..++.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.40 E-value=0.75 Score=36.61 Aligned_cols=81 Identities=12% Similarity=-0.068 Sum_probs=50.1
Q ss_pred hHHHHHHhhh---hhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 381 KHYGCMADLL---GRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 381 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
.+.+.|+... .+.++.+++..+++.+. -+| .+..-..-...+...|++.+|+++++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555543 35678888888887764 334 222222233446778888888888888877777666444555555
Q ss_pred HHhcCC
Q 042265 456 YANADR 461 (490)
Q Consensus 456 ~~~~g~ 461 (490)
+...|+
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 555555
No 296
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.33 E-value=1.3 Score=41.48 Aligned_cols=127 Identities=16% Similarity=0.098 Sum_probs=80.0
Q ss_pred HHcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 320 AMHGLGRLSLVYFS-RMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 320 ~~~~~~~~A~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
...|+...|-+-+. .++...-.|+.......| +...|+++.+.+.+..... -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566666655443 344433345544443333 4567888888888777765 444556667777888888888888
Q ss_pred HHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 399 ALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 399 A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
|...-+-|.... ++.+...........|-++++...++++..++|+....+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 887777665332 5555554444555667788888888888887665443333
No 297
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.16 E-value=5.3 Score=34.68 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=77.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCC---------------CeehHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC
Q 042265 280 LSTGLVDFYAKCGYINTAIEIFESSQEK---------------NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA-RIKPD 343 (490)
Q Consensus 280 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~ 343 (490)
+-..|...|...+++.+..++++++.+. -...|..-|+.|...++-..-..+|++...- ...|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345666666666666666666554420 1235666777887777777777777766542 33455
Q ss_pred HHHHHHHHHHh-----hccCcHHHHHHHHHHhHHhhCCCCCc-----hHHHHHHhhhhhcCCHHHHHHHHhhCC-----C
Q 042265 344 GVTILGALVGC-----SHAGLVDEARKLFDEMESVYGVSKEL-----KHYGCMADLLGRAGLIEEALEMIKKMP-----M 408 (490)
Q Consensus 344 ~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~ 408 (490)
+..... |+-| .+.|++++|..-|=++-+.+.-..++ .-|..|..++.+.|- .=|+.-. .
T Consensus 227 PlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKN 300 (440)
T KOG1464|consen 227 PLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKN 300 (440)
T ss_pred hHHHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCC
Confidence 544443 3444 35677887765544444433222222 124445555555441 1111111 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042265 409 GGDVFVWSGLLGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 437 (490)
.|.......++.+|..+ +..+-+++++.
T Consensus 301 dPEIlAMTnlv~aYQ~N-dI~eFE~Il~~ 328 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQNN-DIIEFERILKS 328 (440)
T ss_pred CHHHHHHHHHHHHHhcc-cHHHHHHHHHh
Confidence 22444556677776543 44444444443
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.06 E-value=1.2 Score=36.78 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=53.4
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHH---
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYK--- 450 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~--- 450 (490)
..+..+.+.|.+.|+.++|.+.+.++.... -...+-.++......+++..+...+.++.. ..+.+...-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345566677777777777777777665332 334455666667777777777777777766 1222221111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHH
Q 042265 451 -VLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 451 -~l~~~~~~~g~~~~A~~~~~~m 472 (490)
.-+-.+...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1223344567777777766543
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.04 E-value=4.1 Score=33.00 Aligned_cols=134 Identities=10% Similarity=0.071 Sum_probs=89.3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcC--CHHHHHHHHhhCCCCCe
Q 042265 131 QTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAG--DLAHARQLFDRMPFRDA 208 (490)
Q Consensus 131 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 208 (490)
.+++..+.+.+++|+...+..+++.+.+.|++.....++.--+-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 5667777888999999999999999999999998888887665555544433333222211 1344555555553
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
..+..++..+...|++-+|+++.+...... ......++.+..+.+|...-..+++-..+.
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 256677788889999999999887753321 112244566666666766666666655553
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.01 E-value=4.5 Score=33.40 Aligned_cols=90 Identities=9% Similarity=-0.073 Sum_probs=62.7
Q ss_pred HHhhhhhcCCHHHHHHHHhhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 386 MADLLGRAGLIEEALEMIKKMPMGGDVF-----VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
+...+..+|++++|..-++.....+... +--.+.......|.+++|...++...+-.-.. .....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~-~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA-IVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH-HHHHHhhhHHHHcC
Confidence 4556677888888888887765444222 22345556778899999998888765422211 13556688899999
Q ss_pred ChHHHHHHHHHHhcCC
Q 042265 461 RWEDVVKIRRSLDAGK 476 (490)
Q Consensus 461 ~~~~A~~~~~~m~~~~ 476 (490)
+.++|+.-|++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999887775
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.01 E-value=11 Score=38.01 Aligned_cols=148 Identities=9% Similarity=-0.006 Sum_probs=83.7
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCC---CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPP---DFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
-|+.+.+.+.+++|++..+.-.. ..| -.......|..+.-.|+++.|-...-.|.. .+..-|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 35667888888999888776543 233 223456667777777888888777666643 344555555555555
Q ss_pred cCChHHHHHHHHhccc-CCchhHHHHHHHHHhcCCHHHHHHHHhhCC-------------C-------CCeehHHHHHHH
Q 042265 159 FHRLRDAQELFDEILY-RDVVSCNTLIDGYVKAGDLAHARQLFDRMP-------------F-------RDAVSWGTLVAG 217 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------------~-------~~~~~~~~l~~~ 217 (490)
.++......++=.-.. -++..|..++..+.. .+...-.++..+-. + .+...-..|+..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 5554433322222111 145566666666655 33322222222211 0 022334457778
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 042265 218 YAQSDQCEEAIQLFCNMMD 236 (490)
Q Consensus 218 ~~~~g~~~~A~~~~~~m~~ 236 (490)
|...+++..|+..+-.+++
T Consensus 515 Yl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHccChHHHHHHHHhccC
Confidence 8888888888888776643
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.86 E-value=0.29 Score=28.75 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666655
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.81 E-value=0.26 Score=27.08 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
.+..++.+.|++++|.+.++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555566666666666666665554
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=12 Score=37.81 Aligned_cols=167 Identities=11% Similarity=0.060 Sum_probs=100.5
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHH
Q 042265 120 ACSQLCSHSLAQTIHSQVLKLGFIC---DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHA 196 (490)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 196 (490)
-+.+.+.+++|.++.+... |..| -......+|..+.-.|++++|-...-.|...+..-|...+.-+...++....
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3445567777776655432 2344 3456788899999999999999999999998888888888888888777665
Q ss_pred HHHHhhCCCC-CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 042265 197 RQLFDRMPFR-DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR 275 (490)
Q Consensus 197 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 275 (490)
..++-.-... +...|..++..+.. .+. ..|.+.++. -+...|..+-..-+...++ .+. .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~---Wp~~Lys~l~iisa~~~q~----------~q~--S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE---WPGHLYSVLTIISATEPQI----------KQN--S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh---CChhhhhhhHHHhhcchHH----------Hhh--c
Confidence 5554433332 66788888887777 222 223333321 1222333222111111111 111 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 042265 276 VDSFLSTGLVDFYAKCGYINTAIEIFESSQEKN 308 (490)
Q Consensus 276 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 308 (490)
-+......|+..|...+++.+|...+-.+.+++
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 112222337778888888888888877776653
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.45 E-value=0.95 Score=32.25 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
+.-++.+-++.+....+.|++......+++|.+.+|+..|.++++.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4445667777777788999999999999999999999999999998886423 24445665554
No 306
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.15 E-value=16 Score=37.67 Aligned_cols=217 Identities=12% Similarity=-0.037 Sum_probs=114.6
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCChh-------hHHHH-HHHHHhcCCHHHHHHHHhccCC--------CCeehHHHH
Q 042265 252 ACARLGELEQGKNIHRYIELNQIRVDSF-------LSTGL-VDFYAKCGYINTAIEIFESSQE--------KNLFTWNAM 315 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l 315 (490)
......++++|..+..++...-..|+.. .++.| .......|+++.|.++.+.... .....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456678888888888776653233222 12222 1233456788888877765443 245667777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHH--HhhccCcH--HHHHHHHHHhHHhhCCCCC-----chHH
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIKPDGVT---ILGALV--GCSHAGLV--DEARKLFDEMESVYGVSKE-----LKHY 383 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~--~~~~~g~~--~~a~~~~~~~~~~~~~~~~-----~~~~ 383 (490)
..+..-.|++++|..+..+..+..-.-+... +..+.. .+..+|+. .+.+..+......+..... ..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888889999999888776655321223222 222222 24556633 3333334443332111111 1233
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-----CCC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHHH-
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-----MGG---DV-FVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYKV- 451 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-----~~~---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~- 451 (490)
..+..++.+ .+.+..-..... ..+ +. ..+..++......|+.+.|...+.++.. ..+....-|..
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 334444443 333333222211 112 11 1223667778889999999999999988 33321112221
Q ss_pred ----HHHHHHhcCChHHHHHHHHH
Q 042265 452 ----LADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 452 ----l~~~~~~~g~~~~A~~~~~~ 471 (490)
-.......|+..+|.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 11223467888888777665
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.11 E-value=2.2 Score=35.22 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDN--IALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
.+..+...|.+.|+.+.|.+.|.++.+....+.. ..+..+++.....+++..+.....++...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566677777777777777777777665444332 24456666666677777776666665543
No 308
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.10 E-value=0.87 Score=32.82 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 326 RLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 326 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
-+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+ +....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35566677777778899999999999999999999999999999988544 333377766653
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.95 E-value=15 Score=36.87 Aligned_cols=273 Identities=12% Similarity=0.059 Sum_probs=160.1
Q ss_pred HHHHHHHHhhCCCC-CeehHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccC--
Q 042265 193 LAHARQLFDRMPFR-DAVSWGTLVAG-----YAQSDQCEEAIQLFCNMMD-------LDIKPDNIALVSALSACARLG-- 257 (490)
Q Consensus 193 ~~~a~~~~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 257 (490)
...|.+.++..... +...-..+..+ +....+.+.|+.+|+.+.+ .|. ......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCC
Confidence 45677777665544 33333333332 3355688888888888766 442 224455666665532
Q ss_pred ---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHhccCCC-CeehHHHHHHHHH----HcCChHHH
Q 042265 258 ---ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK-CGYINTAIEIFESSQEK-NLFTWNAMLVGLA----MHGLGRLS 328 (490)
Q Consensus 258 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~A 328 (490)
+.+.|..++....+.| .|+.......+..... -.+...|.++|....+. .+..+-.+..+|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677888888888887 5555544333333322 24677888888876653 3334333333332 23477889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh---hh----cCCHHHHHH
Q 042265 329 LVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL---GR----AGLIEEALE 401 (490)
Q Consensus 329 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~ 401 (490)
..++++..+.| .|...--...+..+.. ++++.+.-.+..+... +.......-..+.... .. ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999988887 3332222223333333 6666666666665553 3322211111111111 11 235566777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-C--ChHHHHHHHHHHhc
Q 042265 402 MIKKMPMGGDVFVWSGLLGGCRIH----GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA-D--RWEDVVKIRRSLDA 474 (490)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~ 474 (490)
.+.+....++......+...|..- .+++.|...+.++.... ......++..+... | ++..|.+++++..+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 777777777777777777775433 46888998888887766 45667777776542 1 25778888877665
Q ss_pred C
Q 042265 475 G 475 (490)
Q Consensus 475 ~ 475 (490)
.
T Consensus 538 ~ 538 (552)
T KOG1550|consen 538 E 538 (552)
T ss_pred c
Confidence 4
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=0.67 Score=40.92 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=32.3
Q ss_pred CchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 042265 91 SPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLG 141 (490)
Q Consensus 91 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 141 (490)
++++++.++..=.+.|+-||..+++.+|..+.+.+++..|.++.-.|....
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666666666655555443
No 311
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.89 E-value=10 Score=32.95 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=34.8
Q ss_pred HHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 386 MADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+.+-|.+.|.+..|..-+++|.+.. ....+-.+..+|...|-.++|...-+-+..-.|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4445556666666555555544221 334455566667777777777766665555555554
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.87 E-value=11 Score=34.10 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCC--hHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042265 225 EEAIQLFCNMMDLDIKPDNI--ALVSALSACARLGE--LEQGKNIHRYIELNQIRVDSFLSTGLV 285 (490)
Q Consensus 225 ~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (490)
+.+..+|+.+.+.|...+.. ..+.++..+....+ ..++..+++.+.+.|+++....|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 44556666666655554332 22333333222222 335666777777777776666655444
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.74 E-value=1.8 Score=35.98 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=56.2
Q ss_pred hhhcCCHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCCchHHHHHHHHHhcCCh
Q 042265 390 LGRAGLIEEALEMIKKMPMGG---DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK----PEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~ 462 (490)
..+.|+ ++|.+.|-.+...| ++.....++..|. ..+.++++.++-+++++. ..|+.++.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 56777777777666 6666666665555 678999999999999933 23578999999999999999
Q ss_pred HHHH
Q 042265 463 EDVV 466 (490)
Q Consensus 463 ~~A~ 466 (490)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.64 E-value=0.55 Score=41.90 Aligned_cols=96 Identities=16% Similarity=-0.015 Sum_probs=71.5
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCH
Q 042265 351 LVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNV 428 (490)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 428 (490)
..-|.++|.+++|+..|..... -.+.++.++..-..+|.+..++..|..-........ -...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4457889999999999998876 344488888888888999999888877666544221 333455555555567888
Q ss_pred HHHHHHHHHHHhhCCCCCch
Q 042265 429 EIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 429 ~~a~~~~~~~~~~~p~~~~~ 448 (490)
.+|.+-++.++++.|.+...
T Consensus 182 ~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHhHHHHHhhCcccHHH
Confidence 99999999999999986543
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.64 E-value=0.39 Score=26.61 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.++..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999988654
No 316
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=2.4 Score=36.21 Aligned_cols=63 Identities=6% Similarity=-0.140 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..+..+..++...|++-++++....+++..|.+..+|..-+.+....=+..+|..=|.++.+.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 344455566666777777777777777777777777777777776666666666666655443
No 317
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.32 E-value=3.2 Score=36.77 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCChhhHHHH
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIEL-----NQIRVDSFLSTGL 284 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 284 (490)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44455555556666666666666665543 33555666666666666666666666555544 3555555554443
Q ss_pred H
Q 042265 285 V 285 (490)
Q Consensus 285 ~ 285 (490)
.
T Consensus 234 ~ 234 (280)
T COG3629 234 E 234 (280)
T ss_pred H
Confidence 3
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.32 E-value=0.43 Score=26.75 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=19.2
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 042265 135 SQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQ 166 (490)
Q Consensus 135 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 166 (490)
++.++.. |.+...|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 556666777777777777766664
No 319
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.15 E-value=1.2 Score=39.96 Aligned_cols=55 Identities=11% Similarity=0.025 Sum_probs=45.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
..-|.++|.+++|+.+|.+.... .| |++++..-..+|.+...+..|+.--..+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45689999999999999987764 55 888888888999999999888877666655
No 320
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.96 E-value=8.7 Score=30.75 Aligned_cols=107 Identities=17% Similarity=0.096 Sum_probs=51.4
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCCchH-HHHHHhhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 042265 355 SHAGLVDEARKLFDEMESVYGVSKELKH-YGCMADLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAE 432 (490)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 432 (490)
...++.+.+..++..+.- ..|.... -..-...+...|++.+|.++|+++...+ ....-..|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 355677777777777764 2333222 2223344567777788887777766443 2222233333343332222223
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 433 AAAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
...+++++..+ ++ .-..++..+....+...|.
T Consensus 98 ~~A~evle~~~-d~-~a~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 98 RYADEVLESGA-DP-DARALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHhcCC-Ch-HHHHHHHHHHHhccccchh
Confidence 33444444444 22 2233444444444433333
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.84 E-value=0.52 Score=24.40 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 042265 448 VYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777888888888877765
No 322
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=89.83 E-value=32 Score=37.01 Aligned_cols=245 Identities=11% Similarity=-0.008 Sum_probs=137.6
Q ss_pred CCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHHHhcccCCchhHHHHHHHH
Q 042265 109 PDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL-RDAQELFDEILYRDVVSCNTLIDGY 187 (490)
Q Consensus 109 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~l~~~~ 187 (490)
+|...-...+..+.+.+..+ +...+..+++ .++..+-...+..+.+.+.. .....+...+..+|...-...+.++
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL 708 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVL 708 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHH
Confidence 56666666677776666533 4444444443 34555555555555554322 1112222333445666666666666
Q ss_pred HhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH-HHHHH
Q 042265 188 VKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQ-GKNIH 266 (490)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~ 266 (490)
...+.-+ ...+...+..+|...-...+.++.+.+..+. +..+.. .++...-.....++...+..+. +...+
T Consensus 709 ~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 5543211 2334455666677666677777776655432 222222 3455555666666666665432 23334
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 042265 267 RYIELNQIRVDSFLSTGLVDFYAKCGYINTAI-EIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGV 345 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 345 (490)
..+.+ .++..+-...+.++.+.|..+.+. .+...+..++...-...+.++...+. +++...+..+.+ .|+..
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~ 853 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLD 853 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHH
Confidence 44433 456778888888888888765553 34444555666666667777777765 345566655554 46666
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.-...+.++.+.+....+...+..+.+
T Consensus 854 VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 854 VRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666777777665334456666666655
No 323
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=89.71 E-value=32 Score=36.95 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=19.5
Q ss_pred cccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHH
Q 042265 172 ILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGY 218 (490)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 218 (490)
+..+|+..-..-+..+.+.++.+....+...+..++...-...+.++
T Consensus 630 L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 630 LADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred hcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33445555555555555544433223333333333333333333333
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.66 E-value=0.42 Score=37.87 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 042265 81 TIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH 160 (490)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 160 (490)
.+++.+.+.+.++.....++.+...+...+....+.++..|++.++.+...++++. .+..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 45677778888888888999888766556677888899999998877888777762 11122345666677777
Q ss_pred ChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCC
Q 042265 161 RLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQ 223 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (490)
.+++|.-++.++...+.. +..+...++++.|.+...+.. +...|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~~--~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKVD--DPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGCS--SSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhcC--cHHHHHHHHHHHHhcCc
Confidence 777776665554221100 000112233333333333322 46677777777766654
No 325
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.52 E-value=0.76 Score=25.49 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999988754
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.05 E-value=0.76 Score=26.85 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=24.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3688999999999999999999998764
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.02 E-value=21 Score=35.80 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh---cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 042265 359 LVDEARKLFDEMESVYGVSKELKHYGCMADLLGR---AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIA 431 (490)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 431 (490)
+.+.|..++.+..+. +. |+...+ +...+.. ..+...|.++|......+....+..+...|.. ..+...|
T Consensus 308 d~~~A~~~~~~aA~~-g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL-GN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhc-CC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 566677777777663 32 333222 2222222 23456777777777766666655555554432 3467778
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhc-CChHHHHHHHHHHhcCCCC
Q 042265 432 EAAAEHVMKLKPEDGGVYKVLADVYANA-DRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 478 (490)
..+++++.+.++. .+...+...+.-. ++++.+.-.+..+.+.|.+
T Consensus 384 ~~~~k~aA~~g~~--~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 384 FAYYKKAAEKGNP--SAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHccCh--hhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 8888887776632 2333333332221 6666666666666555543
No 328
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.93 E-value=23 Score=34.14 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=97.0
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
|.....+++..+.....+.-+..+-.+|..-| .+...|..++.+|... ..++-..+|+++.+..+ .|+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44556667777777777777777777777754 4566777788887776 56677777887777652 34444455555
Q ss_pred HHHhcCCHHHHHHHHhccCCC------Ce---ehHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhc
Q 042265 287 FYAKCGYINTAIEIFESSQEK------NL---FTWNAMLVGLAMHGLGRLSLVYFSRMIE-ARIKPDGVTILGALVGCSH 356 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~ 356 (490)
.|.+ ++.+++..+|.++... +. ..|.-+... -..+.+..+.+..+... .|..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 6667776666654321 11 122222211 12334444444444433 2222233444444455666
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
..++.+|.+++..+.+ ....|...-..++..
T Consensus 218 ~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILE--HDEKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhh--hcchhhhHHHHHHHH
Confidence 6666677666666665 344444444444443
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.85 E-value=0.56 Score=25.67 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 448 VYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++..++.++.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678899999999999999999998765
No 330
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.76 E-value=2.8 Score=29.98 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=38.4
Q ss_pred hHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 94 NAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
++.+-++.+...++.|++....+.+++|-+.+++..|.++++..+... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445555566666677777777888888877888888888877766432 22444555544
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.74 E-value=0.86 Score=24.19 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 415 WSGLLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 415 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
+..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444555555555555555554444
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.69 E-value=14 Score=31.53 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=9.2
Q ss_pred ccCChHHHHHHHHHH
Q 042265 255 RLGELEQGKNIHRYI 269 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~ 269 (490)
-.+++++|.+++.+.
T Consensus 26 g~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 26 GSNKYEEAAELYERA 40 (288)
T ss_pred CCcchHHHHHHHHHH
Confidence 344677777766654
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.68 E-value=4.7 Score=39.29 Aligned_cols=140 Identities=19% Similarity=0.079 Sum_probs=64.6
Q ss_pred CCCcccHHHHHHH-----HHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchh
Q 042265 73 YPSTFSYNTIIRA-----HTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVF 147 (490)
Q Consensus 73 ~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 147 (490)
+-++..|..++.. ..-.|+++.|..++..+. ....+.+...+.++|-.++|+++ .+|..
T Consensus 578 e~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d 641 (794)
T KOG0276|consen 578 ELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPD 641 (794)
T ss_pred ccceEeEeeehHHHHHHHHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChh
Confidence 3445555443332 234566666655443332 22334455555555555555443 22222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHH
Q 042265 148 VLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 148 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 227 (490)
-. .....+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+.. -|..|+-.+...|+.+..
T Consensus 642 ~r---Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 642 QR---FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hh---hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHH
Confidence 11 12334566776666654442 233345555555555555555555554432 244444445555554444
Q ss_pred HHHHHHHHhCC
Q 042265 228 IQLFCNMMDLD 238 (490)
Q Consensus 228 ~~~~~~m~~~~ 238 (490)
..+-....+.|
T Consensus 712 ~~la~~~~~~g 722 (794)
T KOG0276|consen 712 AVLASLAKKQG 722 (794)
T ss_pred HHHHHHHHhhc
Confidence 44444444333
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.58 E-value=0.95 Score=36.69 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 428 VEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 428 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
+++|+.-|++++.++|+...++..++.+|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5677888888888999999999999999887653
No 335
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.47 E-value=1.5 Score=27.54 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 042265 416 SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 416 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 448 (490)
..+.-++.+.|++++|.+..+.+++.+|++..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 346677899999999999999999999998743
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.29 E-value=1.1 Score=24.78 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+|..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999999999987653
No 337
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.23 E-value=6 Score=32.78 Aligned_cols=87 Identities=15% Similarity=0.013 Sum_probs=43.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 318 GLAMHGLGRLSLVYFSRMIEARIKPDG-----VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 318 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
-+..+|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|+.--.+..+. .+........-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 3556666666666666666542 2211 22333334455566666666555555541 11112222222345556
Q ss_pred cCCHHHHHHHHhhCC
Q 042265 393 AGLIEEALEMIKKMP 407 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~ 407 (490)
..++++|++-++++.
T Consensus 181 ~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 181 MEKYEEALEDYKKIL 195 (271)
T ss_pred hhhHHHHHHHHHHHH
Confidence 666666666666554
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.96 E-value=4.4 Score=38.26 Aligned_cols=120 Identities=14% Similarity=0.035 Sum_probs=78.3
Q ss_pred HHHHHhcCCHHHHHH-HHhccCC--CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 042265 285 VDFYAKCGYINTAIE-IFESSQE--KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD 361 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~-~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 361 (490)
|.--...|++..|-+ ++..+.. .++.........+...|+++.+...+...... +.....+...+++...+.|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 333445677666644 3333332 24444344444566789999999888766543 3445678888899999999999
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 362 EARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
+|...-..|.. .-..+++............|-++++...|+++.
T Consensus 375 ~a~s~a~~~l~--~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 375 EALSTAEMMLS--NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHhc--cccCChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 99999888887 333444444444444456678899998888754
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.69 E-value=6.7 Score=34.97 Aligned_cols=100 Identities=17% Similarity=0.091 Sum_probs=72.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC-Ce-----ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 042265 273 QIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK-NL-----FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVT 346 (490)
Q Consensus 273 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 346 (490)
|.+....+...++..-....+++++...+-++... +. .+-...++.+ -.=++++++.++..=++.|+.||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 44555666666776666677888888877666532 11 1111222322 33467789999888889999999999
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
+..++..+.+.+++..|.++.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999888777664
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.46 E-value=39 Score=35.07 Aligned_cols=211 Identities=12% Similarity=0.035 Sum_probs=112.5
Q ss_pred HHhcCChHHHHHHHHhc----ccCCch-------hHHHHHH-HHHhcCCHHHHHHHHhhCCC--------CCeehHHHHH
Q 042265 156 YCVFHRLRDAQELFDEI----LYRDVV-------SCNTLID-GYVKAGDLAHARQLFDRMPF--------RDAVSWGTLV 215 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~----~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~ 215 (490)
.....++++|..++.++ ..++.. .|+.+-. .....|++++|+++-+.... .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888776 222221 3333322 23456888888877665331 1456777888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHccCChHHH--HHHHHHHHHc---CCCC---ChhhHH
Q 042265 216 AGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSAL-----SACARLGELEQG--KNIHRYIELN---QIRV---DSFLST 282 (490)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a--~~~~~~~~~~---~~~~---~~~~~~ 282 (490)
.+..-.|++++|..+..+..+..-.-+...+.... ..+...|+...+ ...+...... ..+. -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999998887776543233443332222 234555633222 2233332222 1111 123344
Q ss_pred HHHHHHHhcCCHHHHHHHHhccC------CCCe----ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----CHHHHH
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQ------EKNL----FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP----DGVTIL 348 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~------~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~ 348 (490)
.+..++.+ ++.+..-..... .+.. ..+..|+......|+.++|...+.++......+ +..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 333332222211 1211 122356777788899999999988887643333 222222
Q ss_pred HHHHH--hhccCcHHHHHHHHHH
Q 042265 349 GALVG--CSHAGLVDEARKLFDE 369 (490)
Q Consensus 349 ~l~~~--~~~~g~~~~a~~~~~~ 369 (490)
..+.. -...|+.+++.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 2356788777776665
No 341
>PRK12798 chemotaxis protein; Reviewed
Probab=87.33 E-value=26 Score=32.94 Aligned_cols=185 Identities=17% Similarity=0.170 Sum_probs=106.4
Q ss_pred cCCHHHHHHHHhccCCC----CeehHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCcHH
Q 042265 291 CGYINTAIEIFESSQEK----NLFTWNAMLVGL-AMHGLGRLSLVYFSRMIEARIKPDG----VTILGALVGCSHAGLVD 361 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~-~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~ 361 (490)
.|+.+++.+.+..+... ....|-.|+.+- ....++..|+++|+...-. .|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 35666666666555432 333455555443 3456777788887776542 3322 23333344456778888
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHH-HHhhh---hhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042265 362 EARKLFDEMESVYGVSKELKHYGC-MADLL---GRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 437 (490)
+...+-......|...|-..-|.. +...+ ....+.+.-..++..|....-...|..+...-.-.|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 877777777665544444333322 22222 23334455556666666444667888888888888999998888888
Q ss_pred HHhhCCCCCchHHHHHHHHH-----hcCChHHHHHHHHHHhcCCCC
Q 042265 438 VMKLKPEDGGVYKVLADVYA-----NADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 438 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~~~~~ 478 (490)
+..+...+. .-...+..|. -..+.++|.+.++.+....+.
T Consensus 283 A~~L~~~~~-~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 283 ALKLADPDS-ADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHhccCCC-cchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 888543322 3333333332 345577777777666544443
No 342
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.26 E-value=66 Score=37.54 Aligned_cols=306 Identities=11% Similarity=0.002 Sum_probs=160.4
Q ss_pred HHHHHHhccCCcHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh-cccCCchhHHHHHHHHHhc
Q 042265 116 FLLRACSQLCSHSLAQTIHSQV----LKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDE-ILYRDVVSCNTLIDGYVKA 190 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~ 190 (490)
.+..+-.+.+.+.+|...++.- .+. ......+..+...|...+++|...-+... ...++ ...-|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhh
Confidence 3444556778888888888873 221 12233444555589999999988777763 33333 22345556778
Q ss_pred CCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccCChHHHHHHH
Q 042265 191 GDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVS-ALSACARLGELEQGKNIH 266 (490)
Q Consensus 191 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~ 266 (490)
|+++.|...|+.+... ...+++-++......|.++.+....+-..... .+....++. =..+--+.+++|......
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 9999999999998754 35578888888888888888877665554432 223333322 234445677777766655
Q ss_pred HHHHHcCCCCChhhHHH--HHHHHHhcC--CHHHHHHHHhccCC----C---------CeehHHHHHHHHHHcCChHHHH
Q 042265 267 RYIELNQIRVDSFLSTG--LVDFYAKCG--YINTAIEIFESSQE----K---------NLFTWNAMLVGLAMHGLGRLSL 329 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~A~~~~~~~~~----~---------~~~~~~~l~~~~~~~~~~~~A~ 329 (490)
. .. +..+|.. ++....+.. +.-.-.+.++.+.+ + -...|..++....-..--...
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~- 1613 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI- 1613 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH-
Confidence 4 11 1122211 222222211 11111111111110 0 012233333322211110000
Q ss_pred HHHHHHHHCCCCCCH------HHHHHHHHHhhccCcHHHHHHHHHHhHHhhC-----CCCCchHHHHHHhhhhhcCCHHH
Q 042265 330 VYFSRMIEARIKPDG------VTILGALVGCSHAGLVDEARKLFDEMESVYG-----VSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 330 ~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
+.. .+..++. .-|..-+.--....+..+-+--+++..-... -..-..+|....+...++|+++.
T Consensus 1614 ---~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1614 ---EEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred ---HHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 000 1112221 1122222211111111111111111111001 11234577778888888999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
|...+-+.....-+..+-..+......|+...|+.++++.++
T Consensus 1689 A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1689 AQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 988776655444666777778888999999999999999987
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.14 E-value=7.2 Score=32.53 Aligned_cols=73 Identities=11% Similarity=0.002 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHH
Q 042265 225 EEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELN---QIRVDSFLSTGLVDFYAKCGYINTAI 298 (490)
Q Consensus 225 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~ 298 (490)
+.|.+.|-++...+.--++.....+...|. ..+.+++..++....+. +-.+|+.++..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666666554444444444444443 55666677666666554 22456666667777776666666653
No 344
>PRK10941 hypothetical protein; Provisional
Probab=86.70 E-value=4.1 Score=36.15 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.-.+..|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34556666888888999999999888888888877778888888888888888877776554
No 345
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.18 E-value=42 Score=34.22 Aligned_cols=84 Identities=11% Similarity=0.125 Sum_probs=44.4
Q ss_pred CCCchhHHHHHHHhhhCC---CCCCcccHHHHHHHHh--ccCCcHHHHHHHHHHHHhCC---------CCchhHHHHHHH
Q 042265 89 FSSPLNAVVLFSQMRTVS---IPPDFYSFPFLLRACS--QLCSHSLAQTIHSQVLKLGF---------ICDVFVLNSLMH 154 (490)
Q Consensus 89 ~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~ 154 (490)
.+++..|.+.++.+...- ..|-...+..++.+.. +.+..+.+.+.++.+..... .|...++..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 367777887777765432 1233333444444432 34555666666665533211 234555666655
Q ss_pred HHH--hcCChHHHHHHHHhc
Q 042265 155 VYC--VFHRLRDAQELFDEI 172 (490)
Q Consensus 155 ~~~--~~g~~~~A~~~~~~~ 172 (490)
.++ ..|+++.+.+.++++
T Consensus 232 l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 544 456666666665555
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.78 E-value=1.4 Score=26.40 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 450 KVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357788888888888888888887554
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.36 E-value=3.3 Score=36.41 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
++......|...|.+.+|.++.+++++.+|-+...+..+...+...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445566778999999999999999999999999899999999999999777877777764
No 348
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.25 E-value=7.1 Score=28.32 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 226 EAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 226 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
+..+-+..+....+.|++....+.+++|.+.+++..|.++++-+.... .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445556666666777888888888888888888888888887776553 222335655554
No 349
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.99 E-value=7.8 Score=38.85 Aligned_cols=189 Identities=19% Similarity=0.248 Sum_probs=102.4
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNI----------ALVSALSACARLGELEQGKNIHRYIELNQIRVD 277 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 277 (490)
..+-..++..|....+++...++.+.+++. ||.. .|...++--.+-|+-++|..+.-.+++..-+..
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 345666777788888888888888887762 3221 223333333455777788777766666533333
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 357 (490)
+..|. -+|+ +|+.|- +-+.|...+..+.|.++|++.-+ +.|+..+-..+...+...
T Consensus 278 pDm~C-------l~GR------IYKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 278 PDMYC-------LCGR------IYKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred Cceee-------eech------hhhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 33332 2222 111111 01123334555677788877665 456554322222222222
Q ss_pred Cc-HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042265 358 GL-VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAE 436 (490)
Q Consensus 358 g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 436 (490)
|. ++...++ ... | -.|-..+++.|..++..++|+-. + .+.+-.-.+++.+|++..+
T Consensus 334 G~~Fens~El----q~I-g--------mkLn~LlgrKG~leklq~YWdV~-------~---y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 334 GEHFENSLEL----QQI-G--------MKLNSLLGRKGALEKLQEYWDVA-------T---YFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred hhhccchHHH----HHH-H--------HHHHHHhhccchHHHHHHHHhHH-------H---hhhhhhhccCHHHHHHHHH
Confidence 32 1111111 110 1 12334567888888877777532 2 3344455688999999999
Q ss_pred HHHhhCCCCC
Q 042265 437 HVMKLKPEDG 446 (490)
Q Consensus 437 ~~~~~~p~~~ 446 (490)
.|.++.|+..
T Consensus 391 ~mfKLk~P~W 400 (1226)
T KOG4279|consen 391 MMFKLKPPVW 400 (1226)
T ss_pred HHhccCCcee
Confidence 9999888754
No 350
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.82 E-value=4 Score=34.80 Aligned_cols=79 Identities=10% Similarity=0.118 Sum_probs=44.3
Q ss_pred CCHHHHHHHHhh-CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 394 GLIEEALEMIKK-MPMGGDV-FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 394 g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
.+++.|+..+.+ +...|.. .-|..=+.++.+..+++.+..-..+++++.|+.......++........+++|+..+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 334444444433 3344433 23334444555566666666666666666666666666666666666666666666665
Q ss_pred H
Q 042265 472 L 472 (490)
Q Consensus 472 m 472 (490)
.
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 5
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.78 E-value=4.3 Score=34.11 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=51.8
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 383 YGCMADLLGRAGLIEEALEMIKK-MPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.+.-+..+.+.++.++|+...++ ++.+| +...-..++..++-.|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44556677788899999988765 66777 777777788889999999999999999988888754
No 352
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.74 E-value=4 Score=29.19 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCChH
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE--DGGVYKVLADVYANADRWE 463 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 463 (490)
|......+...+...|++++|++.+-.+++.+|. +...-..++..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 5566666677777777777777777777775443 3445566666666666643
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.19 E-value=14 Score=26.83 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=31.9
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 042265 186 GYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL 246 (490)
Q Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 246 (490)
.+...|++++|..+.+.+..||...|.+|.. .+.|..+++..-+..|..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445566666666666665555555555433 35565666666666666555 3443333
No 354
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.55 E-value=0.67 Score=41.49 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=26.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 419 LGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..++.+.++...|++=+..+++++|+...-|-.-+.+..-.|+|++|...+....+.
T Consensus 155 ~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 155 ASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 333444444444444444444444444444444444444444444444444444433
No 355
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.36 E-value=7.6 Score=31.68 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 411 DVFVWSGLLGGCRIHG-----------NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
...++..+..++...+ .+++|...|+++.+.+|.+. .|..-+... ++|-++..++.+++.
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 3455555555554332 36778888888888999887 776655554 346666666655543
No 356
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.51 E-value=38 Score=30.72 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--cC----cHHHHHHHHHHhHHhhCCC--CCchHHHHHHhhhhhcCCHH
Q 042265 326 RLSLVYFSRMIEARIKPDGVTILGALVGCSH--AG----LVDEARKLFDEMESVYGVS--KELKHYGCMADLLGRAGLIE 397 (490)
Q Consensus 326 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 397 (490)
++.+.+++.|.+.|..-+..+|.+....... .. ....|..+|+.|++.+.+- ++...+..++.. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3456677788888877776666553332222 22 3556788888888865442 233333333322 333333
Q ss_pred ----HHHHHHhhCCC----CCCH-HHHHHHHHHHHhcCC--HHHHHHHHHHHHh
Q 042265 398 ----EALEMIKKMPM----GGDV-FVWSGLLGGCRIHGN--VEIAEAAAEHVMK 440 (490)
Q Consensus 398 ----~A~~~~~~~~~----~~~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 440 (490)
.+..+++.+.. +++. .....++..+....+ ..++.++++.+.+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~ 210 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK 210 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 34444544432 2333 333333333322222 3466777777766
No 357
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.26 E-value=15 Score=28.90 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCCCCCCch--hHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---------CCCcccHHHHHHH
Q 042265 17 HQIHAHFLTKGLLFLSPCH--ILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---------YPSTFSYNTIIRA 85 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~ 85 (490)
..+..++.+.+ .. ++. ...|.++.-.. ..+++...+++++.+. ..+-.+|+.++.+
T Consensus 22 ~~~~~y~~~~~-~~--~~~k~~fiN~iL~hl~----------~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~S 88 (145)
T PF13762_consen 22 NSHLPYMQEEN-AS--QSTKTIFINCILNHLA----------SYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKS 88 (145)
T ss_pred HHHHHHhhhcc-cC--hhHHHHHHHHHHHHHH----------HccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHH
Confidence 34444455555 43 333 46778888777 7788888888887764 1355677788887
Q ss_pred HHcCCC-chhHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 042265 86 HTLFSS-PLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQL 124 (490)
Q Consensus 86 ~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 124 (490)
..+... ---+..+|.-|++.+.+++..-|..+|.++.+.
T Consensus 89 lsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 89 LSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 765555 334667777777777777777788888876654
No 358
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=81.22 E-value=9.7 Score=28.84 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 327 LSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
+..+-++.+....+.|++......+++|.+.+|+..|.++|+.++.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 34455666677788999999999999999999999999999998874 4444445655553
No 359
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.14 E-value=23 Score=27.39 Aligned_cols=70 Identities=10% Similarity=-0.030 Sum_probs=45.2
Q ss_pred CCchHHHHHHhhhhhcCCH---HHHHHHHhhCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 378 KELKHYGCMADLLGRAGLI---EEALEMIKKMPM--GG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
++..+--.+..++.+..+. .+-+.+|+++.. .| ...-..-+.-++.+.++++++.++.+..++.+|+|..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4444444455566555443 345566666542 22 3334445666788899999999999999999998773
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.08 E-value=12 Score=31.62 Aligned_cols=59 Identities=15% Similarity=-0.008 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHH
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLK 139 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 139 (490)
+..++.+.+.++.++++...++-.+.. +.|..+-..++..++-.|++++|..-++..-+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 334455555555555555555544432 23344455555555555666655555544433
No 361
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=81.08 E-value=9.1 Score=26.89 Aligned_cols=65 Identities=15% Similarity=0.036 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHH
Q 042265 17 HQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAV 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 96 (490)
..++....++| + -+....+.+-..-. ..|+.+.|+++++.++ ..+..|..+++++...|.-.-|.
T Consensus 22 ~~v~d~ll~~~-i---lT~~d~e~I~aa~~----------~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQG-L---LTEEDRNRIEAATE----------NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcC-C---CCHHHHHHHHHhcc----------ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 67888888888 5 34445555555444 5688999999999999 88889999999998888766554
No 362
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.89 E-value=13 Score=36.40 Aligned_cols=78 Identities=12% Similarity=-0.077 Sum_probs=39.6
Q ss_pred HHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHH
Q 042265 37 LTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPF 116 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 116 (490)
.-+.+...+- +.|-.++|+.+-. |.. .-.....+.|+++.|.++..+. .+..-|..
T Consensus 616 ~rt~va~Fle----------~~g~~e~AL~~s~-----D~d---~rFelal~lgrl~iA~~la~e~------~s~~Kw~~ 671 (794)
T KOG0276|consen 616 IRTKVAHFLE----------SQGMKEQALELST-----DPD---QRFELALKLGRLDIAFDLAVEA------NSEVKWRQ 671 (794)
T ss_pred hhhhHHhHhh----------hccchHhhhhcCC-----Chh---hhhhhhhhcCcHHHHHHHHHhh------cchHHHHH
Confidence 3455556655 6666666665421 111 1122334555666665554432 13334666
Q ss_pred HHHHHhccCCcHHHHHHHHHHH
Q 042265 117 LLRACSQLCSHSLAQTIHSQVL 138 (490)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~~~ 138 (490)
|.++....+++..|.+.|....
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhc
Confidence 6666666666666666655543
No 363
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.63 E-value=21 Score=34.16 Aligned_cols=101 Identities=16% Similarity=0.042 Sum_probs=55.3
Q ss_pred HHhcCCHHHHHHHHhccCC---C---------CeehHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH----
Q 042265 288 YAKCGYINTAIEIFESSQE---K---------NLFTWNAMLVGLAMHGLGRLSLVYFSRMIE-------ARIKPDG---- 344 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-------~~~~p~~---- 344 (490)
+.-.|++.+|.+++....- + .-..||.|...+.+.|.+..+..+|.+..+ .|+.|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4445677777766643321 1 112345555555555666655555555442 3444432
Q ss_pred -------HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 345 -------VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 345 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
.+|+.=+ .+...|++-.|.+.|.+... -+..++..|-.|..+|.
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 2333322 24567777777777777776 34556666666666654
No 364
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.18 E-value=40 Score=29.54 Aligned_cols=59 Identities=5% Similarity=-0.101 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC----C-------CHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 042265 212 GTLVAGYAQSDQCEEAIQLFCNMMDLDIK----P-------DNIALVSALSACARLGELEQGKNIHRYIE 270 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 270 (490)
.-|...|...+.+.+..++++++..+--. . -...|..-+..|....+-.+...++++..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34555555556666666666555432100 0 11244444555555555555555555544
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=79.96 E-value=58 Score=31.32 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHh---CC-CCchhHHHHHHHHHHhcCChHHHHHHHHhcccC-CchhHHHHHHHHHhcCCHHHHHHHHh
Q 042265 127 HSLAQTIHSQVLKL---GF-ICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR-DVVSCNTLIDGYVKAGDLAHARQLFD 201 (490)
Q Consensus 127 ~~~a~~~~~~~~~~---g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 201 (490)
.+....++...... |+ ..+......++... .|+...++.+++..... ... ..+...+++.
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I-------------t~~~v~~~~~ 217 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI-------------TLELLEEALQ 217 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC-------------CHHHHHHHHh
Confidence 34555556555432 33 44555555554432 67777777777765321 011 1222223332
Q ss_pred hC---CCCCeehHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 042265 202 RM---PFRDAVSWGTLVAGYAQ---SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL 256 (490)
Q Consensus 202 ~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 256 (490)
.. ..++...+..++.++.+ ..+++.|+.++..|.+.|..|....-..+..++-..
T Consensus 218 ~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 218 KRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred hhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 21 12233445556666655 478999999999999988777655444444444333
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.79 E-value=21 Score=25.95 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 042265 260 EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR 339 (490)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 339 (490)
++|..|-+.+...+- ....+-.+-+..+.+.|++++|..+.+...-||...|-++.. -+.|..+.+..-+.+|...|
T Consensus 22 qEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 445555444444331 122222223445667788888888888887778777766543 35666677777777776665
Q ss_pred CCCCHHHHH
Q 042265 340 IKPDGVTIL 348 (490)
Q Consensus 340 ~~p~~~~~~ 348 (490)
.|....|.
T Consensus 99 -~p~lq~Fa 106 (115)
T TIGR02508 99 -DPRLQTFV 106 (115)
T ss_pred -CHHHHHHH
Confidence 34444443
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.15 E-value=4.9 Score=24.09 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=17.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLD 238 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 238 (490)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777776543
No 368
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.05 E-value=5.2 Score=21.44 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
|+.+.|..+|+++++..|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999888888777766543
No 369
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.34 E-value=27 Score=30.81 Aligned_cols=84 Identities=8% Similarity=-0.078 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHH----HhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh----
Q 042265 284 LVDFYAKCGYINTAIEI----FESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS---- 355 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---- 355 (490)
=|++++..+++.++... |+.-.+-.+.....-|-.|.+.+++..+.++-..-....-.-+...|..+++.|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 46777777887777643 3333333555666666677777777777776665554322223334666555543
Q ss_pred -ccCcHHHHHHHH
Q 042265 356 -HAGLVDEARKLF 367 (490)
Q Consensus 356 -~~g~~~~a~~~~ 367 (490)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 457777777766
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.28 E-value=84 Score=32.11 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=35.3
Q ss_pred HhcCCHHHHHHHHHHHHhh---CCC------CCchHHHHHHHHHhcCChHHHHHHHH
Q 042265 423 RIHGNVEIAEAAAEHVMKL---KPE------DGGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~---~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
.-.+++..|...++.+.+. .|+ .+.++...+..+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4578899999999988873 222 23345556666677899999999997
No 371
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.49 E-value=6.9 Score=38.06 Aligned_cols=96 Identities=16% Similarity=0.062 Sum_probs=45.1
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP--MGGDVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.|+...|...+..+... .........-.|...+.+.|...+|-.++.+.. ....+.++..+.+++.-..+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~-~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNL-APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhcc-ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 35555555555544321 111111122234444444455555555443321 111444555555555555666666666
Q ss_pred HHHHHhhCCCCCchHHHHH
Q 042265 435 AEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~ 453 (490)
|+.+.+..|+++..-+.|.
T Consensus 699 ~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHhcCCCChhhHHHHH
Confidence 6666666666555544443
No 372
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.82 E-value=69 Score=30.90 Aligned_cols=119 Identities=10% Similarity=-0.070 Sum_probs=70.3
Q ss_pred HHHcCChHHHHHHHHHHHH---CCCCCCH-----HHHHHHHHHhhccCcHHHHHHHHHHhHHh------hCCCCCchHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIE---ARIKPDG-----VTILGALVGCSHAGLVDEARKLFDEMESV------YGVSKELKHYG 384 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~---~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~ 384 (490)
+.-+|++.+|.+++...-- .|...++ ..++.+...+.+.|.+..+..+|.+..+. .|++|...
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~--- 326 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT--- 326 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc---
Confidence 4557888888887654321 1211111 12244444445566666666666666541 01111110
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 385 CMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
+ .+.....-.+.....-.|...|++-.|.+.|.++......+|..|..|+.+|...
T Consensus 327 ------------------~-tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 ------------------F-TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ------------------e-ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 0 0111113334445566688899999999999999998888888999999998754
No 373
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.39 E-value=24 Score=24.86 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHH
Q 042265 130 AQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHA 196 (490)
Q Consensus 130 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 196 (490)
+.++++.+.+.|+ .+......+-..-...|+.+.|.+++..+. +.+..|...+.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555552 222222222222224466666666666666 6666666666666655554443
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.38 E-value=1.1e+02 Score=32.42 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhh
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQMR 103 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~ 103 (490)
|..|+..|...|+.++|+++|.+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHh
Confidence 4444444444444444444444443
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.37 E-value=45 Score=29.53 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=47.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-
Q 042265 214 LVAGYAQSDQCEEAIQLFCNMMDL--DIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK- 290 (490)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 290 (490)
=|.+++..++|.+++...-+.-+. .++|. ..-..|-.|.+.+.+..+.++-....+..-.-+..-|..+++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 356777777787777655444332 23333 3333444566777777777766666655333334445555555533
Q ss_pred ----cCCHHHHHHHH
Q 042265 291 ----CGYINTAIEIF 301 (490)
Q Consensus 291 ----~~~~~~A~~~~ 301 (490)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 45555555554
No 376
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.59 E-value=11 Score=34.05 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=67.0
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 385 CMADLLGRAGLIEEALEMIKKMPM----GG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
-=.+-|.+..++..|...|.+-.. .| ++..|+.-..+-...|++..|+.=..+++..+|.+...|..=+.++..
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 334556777888888888876431 12 667777777777778999999999999999999999999888888888
Q ss_pred cCChHHHHHHHHH
Q 042265 459 ADRWEDVVKIRRS 471 (490)
Q Consensus 459 ~g~~~~A~~~~~~ 471 (490)
..++++|....++
T Consensus 166 Le~~~~a~nw~ee 178 (390)
T KOG0551|consen 166 LERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHhh
Confidence 8887766665544
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.10 E-value=60 Score=28.81 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhh
Q 042265 176 DVVSCNTLIDGYVKAGDLAHARQLFDR 202 (490)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 202 (490)
|+.....+...|.+.|++.+|+..|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 444555555666666666666555543
No 378
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.82 E-value=31 Score=29.54 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCHHH-------HHHHHHHHHh--hCCC----CCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 413 FVWSGLLGGCRIHGNVEI-------AEAAAEHVMK--LKPE----DGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~-------a~~~~~~~~~--~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
..+..+...|...|+.+. |.+.|+++.+ ..|. ...+...++....+.|++++|.+.|.++...+-.
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 344455555666666443 4444444444 1222 1245667788888889999999999888866433
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.55 E-value=64 Score=28.85 Aligned_cols=80 Identities=5% Similarity=-0.119 Sum_probs=45.9
Q ss_pred CchhHHHHHHHhhhCCCCCCcccHHHHHHHHhc------cC-----CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 042265 91 SPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ------LC-----SHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVF 159 (490)
Q Consensus 91 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~------~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 159 (490)
..++--+..++..+.-.+....++...+.++.. +| -..+|.++|.-+.++. ....+-..++..+...
T Consensus 102 t~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe 179 (361)
T COG3947 102 TPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHK--GKEVTSWEAIEALWPE 179 (361)
T ss_pred CHHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhc--CCcccHhHHHHHHccc
Confidence 334444444444433223334466666666551 12 2357889998888753 2334455677777777
Q ss_pred CChHHHHHHHHhc
Q 042265 160 HRLRDAQELFDEI 172 (490)
Q Consensus 160 g~~~~A~~~~~~~ 172 (490)
.+..+|...+...
T Consensus 180 ~D~kka~s~lhTt 192 (361)
T COG3947 180 KDEKKASSLLHTT 192 (361)
T ss_pred cchhhHHHHHHHH
Confidence 7777777666543
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.53 E-value=4 Score=27.96 Aligned_cols=45 Identities=4% Similarity=0.051 Sum_probs=33.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCChHHHHHH
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGV---YKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~ 468 (490)
...+.+.|+..++.+++..++.+.- +-.+..+|+.-|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999999998866655544 44556778888888887766
No 381
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.02 E-value=42 Score=26.56 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMM 235 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~ 235 (490)
|..........+...++..+.+.+.
T Consensus 96 Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 96 WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 3333444444444445555544444
No 382
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.00 E-value=1e+02 Score=31.09 Aligned_cols=60 Identities=13% Similarity=0.042 Sum_probs=35.5
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCC-Ch--hHHHHhhccCCCC--CcccHHHHHHHHHcCCCchhHHHHHHHhh
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTD-PL--SYALSIFNNIPYP--STFSYNTIIRAHTLFSSPLNAVVLFSQMR 103 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g-~~--~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 103 (490)
+...+...|+...- +.. .. +.+.+++..-++. ++.-|+ .+..+.-.|.++.|.+++....
T Consensus 111 ~~~~v~~~Ll~WvN----------r~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 111 PRGPVPEQLLDWVN----------RFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp THHHHHHHHHHHHH----------TTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred cCCchHHHHHHHHH----------HhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 33457888999984 222 22 2233334333332 256787 6888889999999999985543
No 383
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.91 E-value=64 Score=28.61 Aligned_cols=141 Identities=16% Similarity=0.071 Sum_probs=65.6
Q ss_pred HHhcCChhHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHccCChH-HHHHHHHHHH---HcC--CCCChhhHHHHHHH
Q 042265 218 YAQSDQCEEAIQLF----CNMMDLDIKPDNIALVSALSACARLGELE-QGKNIHRYIE---LNQ--IRVDSFLSTGLVDF 287 (490)
Q Consensus 218 ~~~~g~~~~A~~~~----~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~---~~~--~~~~~~~~~~l~~~ 287 (490)
+.+.|+...|.++- +-+.+.+.+++......++..+...+.-+ .-.++.+.+. +.+ ..-++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 44445544433332 23333455566655555555554333211 1222222222 221 23456778888999
Q ss_pred HHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
|.+.|++.+|+..|-....++...+..++.-....|...++ +...-..++. |...++...|...+
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YLCLGNLRDANELF 164 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HHHTTBHHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HHHhcCHHHHHHHH
Confidence 99999999998887554433333222222222222222221 2222333333 45578888888888
Q ss_pred HHhHHh
Q 042265 368 DEMESV 373 (490)
Q Consensus 368 ~~~~~~ 373 (490)
+...+.
T Consensus 165 ~~f~~~ 170 (260)
T PF04190_consen 165 DTFTSK 170 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 384
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.82 E-value=69 Score=28.89 Aligned_cols=77 Identities=10% Similarity=-0.094 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-------------
Q 042265 398 EALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD------------- 460 (490)
Q Consensus 398 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 460 (490)
.|...+.+.-..++......+...|.. ..+.++|...|+++.+... ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555544444444444444433322 2355666666666655443 22344444 333333
Q ss_pred --ChHHHHHHHHHHhcCCC
Q 042265 461 --RWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 461 --~~~~A~~~~~~m~~~~~ 477 (490)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 55555555555554443
No 385
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=73.81 E-value=90 Score=30.26 Aligned_cols=239 Identities=9% Similarity=-0.011 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC------ChHHHHHHHHHHHHcC-C-CCChhhHHHHHHHHHhcCCHH-H
Q 042265 226 EAIQLFCNMMDLDIKPDNIALVSALSACARLG------ELEQGKNIHRYIELNQ-I-RVDSFLSTGLVDFYAKCGYIN-T 296 (490)
Q Consensus 226 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~-~ 296 (490)
....+|++..+. -|+...+...|..|...- .+.....+++...+.+ . +.....|..+.-.+....... .
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344566665542 345555555555554322 3344455555554442 1 223445555555555554433 3
Q ss_pred HHHHHhccCCCCeehHHHHHHHHHHcC-ChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc-HHHH--HHHHHHhH
Q 042265 297 AIEIFESSQEKNLFTWNAMLVGLAMHG-LGRL-SLVYFSRMIEARIKPDGVTILGALVGCSHAGL-VDEA--RKLFDEME 371 (490)
Q Consensus 297 A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a--~~~~~~~~ 371 (490)
|..+..+..+.+...|..-++...+.. +.+- -.+.+......-..+....|+... .++ +... ..++..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 333333444555555555555444221 2211 112222232221222223333332 122 1111 12233333
Q ss_pred HhhCCCCCch-HHHHHHhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCC
Q 042265 372 SVYGVSKELK-HYGCMADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCR--IHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 372 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+ -..|+.. .-+.+.+-+.+.|-..+|...+..+...| +...+..++..-. ..-+..-+..+++.+..-.-.++
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 3 2234433 33567777778888888888888876554 6667777766522 22347778888888888333667
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
..|......-...|+.+.+-.++.+..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHH
Confidence 788777776677888777776665543
No 386
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.62 E-value=32 Score=26.49 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=29.4
Q ss_pred HHHHHHHHHHh--hCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 430 IAEAAAEHVMK--LKPEDGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 430 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
.+.++|+.|.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777766 5555555677777777788888888777764
No 387
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.02 E-value=36 Score=30.17 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=31.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHhhccCcHHHHH
Q 042265 315 MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTIL-------GALVGCSHAGLVDEAR 364 (490)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-------~l~~~~~~~g~~~~a~ 364 (490)
+..-..+.+++++|+..+.+....|+..+..+.+ .+...|...|+...-.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 3445566778888888888888887777765543 3444455555544433
No 388
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.95 E-value=1.3e+02 Score=31.82 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=33.8
Q ss_pred CCCChhHHHHhhccCCCCCcccHH-----HHHH---HHHcCCCchhHHHHHHHhhhC
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYN-----TIIR---AHTLFSSPLNAVVLFSQMRTV 105 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~-----~li~---~~~~~g~~~~A~~~~~~m~~~ 105 (490)
...++++|..+-+....|++.... .... -+..+|++++|.+.|.++...
T Consensus 319 ~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 319 QEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred HhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 356699999988877766544321 2222 245789999999999998754
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.04 E-value=26 Score=34.38 Aligned_cols=133 Identities=10% Similarity=-0.037 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHhhcc--CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC-CCCC--CHHHH
Q 042265 341 KPDGVTILGALVGCSHA--GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM-PMGG--DVFVW 415 (490)
Q Consensus 341 ~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~--~~~~~ 415 (490)
-|+..+...++.-.... ...+-+..++..|.. ...|--...|...--+...|+...|.+.+... ...| .-...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 35555555554433221 223344455555544 44443333332222234568999999988764 4455 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 416 SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 416 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..|...+.+.|-.-+|-.++.+.+.+.-..|-++..++++|....+.+.|++.|+...+.
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 667778888888999999999999987777889999999999999999999999987665
No 390
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=71.22 E-value=99 Score=29.62 Aligned_cols=43 Identities=2% Similarity=-0.198 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHH
Q 042265 145 DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGY 187 (490)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 187 (490)
+..+.....+.+...+..+....+..-+...++......+.++
T Consensus 99 ~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al 141 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAAL 141 (410)
T ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3334445555555554444444433333333433333333333
No 391
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.27 E-value=49 Score=32.96 Aligned_cols=85 Identities=6% Similarity=-0.049 Sum_probs=66.2
Q ss_pred hhcCCHHHHHHHHhh-CCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 391 GRAGLIEEALEMIKK-MPMGG-------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~-~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
.+..++..+.++|.. +..-+ -......+.-+|....+.|.|.++++++.+.+|.++-.-.....+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 356778888888764 33222 2345666777788899999999999999999999987777788888899999
Q ss_pred HHHHHHHHHHhcC
Q 042265 463 EDVVKIRRSLDAG 475 (490)
Q Consensus 463 ~~A~~~~~~m~~~ 475 (490)
++|+.+.......
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988776543
No 392
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.86 E-value=49 Score=26.14 Aligned_cols=84 Identities=13% Similarity=0.023 Sum_probs=66.2
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHhhhCC-----CCCCcccHHHHHHHHhccCC-cHHHHHHHHHHHHhCCCCchhHHHH
Q 042265 78 SYNTIIRAHTLFSSPLNAVVLFSQMRTVS-----IPPDFYSFPFLLRACSQLCS-HSLAQTIHSQVLKLGFICDVFVLNS 151 (490)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 151 (490)
..|+++......+++...+.+++.+.... -.-+..+|+.++.+.++... --.+..+|..+.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46888888889999999999988874321 02466789999999877665 4557788999988888999999999
Q ss_pred HHHHHHhcCC
Q 042265 152 LMHVYCVFHR 161 (490)
Q Consensus 152 li~~~~~~g~ 161 (490)
+|.++.+...
T Consensus 121 li~~~l~g~~ 130 (145)
T PF13762_consen 121 LIKAALRGYF 130 (145)
T ss_pred HHHHHHcCCC
Confidence 9998876533
No 393
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.66 E-value=1.4e+02 Score=30.71 Aligned_cols=205 Identities=7% Similarity=-0.140 Sum_probs=96.8
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042265 221 SDQCEEAIQLFCNMMDLD-IKPDNI--ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTA 297 (490)
Q Consensus 221 ~g~~~~A~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 297 (490)
..+.+.|...+....... ..+... ....+.......+..+++...+...... ..+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777654432 222111 2223322223332244555555443322 22444445555555577777777
Q ss_pred HHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHH-HHHHHHhHHh
Q 042265 298 IEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEA-RKLFDEMESV 373 (490)
Q Consensus 298 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 373 (490)
...+..|.+. ...-..=+..++...|+.++|...|+.+... .+ -|..+... +.|..-.- ......-..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~~~~~~~~~~~~- 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAAQ--RLGEEYPLKIDKAPKPDS- 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHHH--HcCCCCCCCCCCCCchhh-
Confidence 7777776532 2223334555656677777777777776321 11 22222211 11211000 000000000
Q ss_pred hCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 374 YGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
.+..++ --.-+..+...|+...|...+..+....+......+.....+.|.++.++....+.
T Consensus 404 -~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 404 -ALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred -hhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 000000 11123445566777777777766554445555566666666777777777666544
No 394
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.16 E-value=95 Score=28.60 Aligned_cols=115 Identities=10% Similarity=-0.011 Sum_probs=67.0
Q ss_pred HHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHh---cCCHHHHHHHH
Q 042265 361 DEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLGGCRI---HGNVEIAEAAA 435 (490)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~---~~~~~~a~~~~ 435 (490)
+.-..+++++.+. .+.+......++..+.+....++..+-++++... | +...|...+..... .-.++.....|
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3445566666652 3345555555666666666666666666665432 2 66666666665443 22455666666
Q ss_pred HHHHh---hCCCC---------------CchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 436 EHVMK---LKPED---------------GGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 436 ~~~~~---~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
.+.++ ..... ..++..+...+.++|-.+.|..+++-+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 65554 00000 12444555666788888888888888887765
No 395
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=68.41 E-value=11 Score=33.57 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=21.6
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+.|+.++|..+|+.++.+.|+++.++..++......++.-+|-.++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 3444555555555555555555544444444444444444444333
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.71 E-value=27 Score=26.56 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=39.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 95 AVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 95 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
..+-++.+...++.|++.....-+++|-+.+|+..|.++|+-++.. ..+...+|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3444555555677788888888888888888888888888876654 234444555444
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.56 E-value=1.1e+02 Score=28.90 Aligned_cols=51 Identities=6% Similarity=-0.112 Sum_probs=26.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHh--hccCcHHHHHHHHHHhHH
Q 042265 321 MHGLGRLSLVYFSRMIEARIKPDGV--TILGALVGC--SHAGLVDEARKLFDEMES 372 (490)
Q Consensus 321 ~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 372 (490)
..+++..|.++++.+... +.++.. .+..+..+| ...-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666666666666654 333333 233333333 234455666666665554
No 398
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.32 E-value=43 Score=23.91 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 435 AEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+++.++.+|++......++..+...|++++|.+.+-++.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555444443
No 399
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=67.24 E-value=48 Score=24.47 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 042265 259 LEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA 338 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 338 (490)
.++|..|.+.+...+. ....+-..-+..+.+.|++++|...=.....||...|-+|- -.+.|-.+++...+.++...
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 4555555555555442 22222222333455556666663333333344555544332 23555555555555555443
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.06 E-value=22 Score=25.52 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=33.1
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCC----C-----CchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPE----D-----GGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
..+.|++..|.+.+.+....... . ..+...++..+...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34667777777666666551111 1 12334566677778888888888877654
No 401
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.69 E-value=85 Score=27.12 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHHHhhCCCC
Q 042265 426 GNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~ 445 (490)
.+.-.+...+++..+.+|.-
T Consensus 209 ~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcc
Confidence 44445555555555555543
No 402
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.55 E-value=19 Score=24.83 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=19.0
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHhhhhhcCCHHHHHH
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKE-LKHYGCMADLLGRAGLIEEALE 401 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 401 (490)
...+.++|+..|....+....+++ ..++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443111111 1233444445555555554443
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.08 E-value=37 Score=32.18 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=37.5
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 385 CMADLLGRAGLIEEALEMIKKMPMGG----------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.|++..+-.|++..|+++++.+.... ...++..++-+|...+++.+|++.|...+-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667788888888877664221 445666666777777777777777776655
No 404
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.80 E-value=1.2e+02 Score=28.56 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 042265 180 CNTLIDGYVKAGDLAHARQLFDRMPFR------DAVSWGTLVAGYAQSDQCEEAIQLFCNMM 235 (490)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 235 (490)
+.-+..-|..+|+++.|.+.|.+...- .+..|-.+|..-.-.|+|.....+..+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 444445555556666665555553311 22334444444455555555555444443
No 405
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.73 E-value=1.3e+02 Score=29.05 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=43.5
Q ss_pred CChhHHHHhhc-------cCCCC---CcccHHHHHHHHHcCC-CchhHHHHHHHhhhCCC-CCCccc---HHHHHHHHhc
Q 042265 59 DPLSYALSIFN-------NIPYP---STFSYNTIIRAHTLFS-SPLNAVVLFSQMRTVSI-PPDFYS---FPFLLRACSQ 123 (490)
Q Consensus 59 g~~~~A~~~~~-------~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~-~p~~~~---~~~ll~~~~~ 123 (490)
.+++-|..-++ .|+.- ...++..|...|.... .+..+..++.+..+..- .| ..+ ...|+.....
T Consensus 61 ~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p-~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 61 KNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP-YWSCKLLFQLAQLHII 139 (629)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHhh
Confidence 56666655554 33321 2235666666666655 77788888888776421 11 111 1234555666
Q ss_pred cCCcHHHHHHHH
Q 042265 124 LCSHSLAQTIHS 135 (490)
Q Consensus 124 ~~~~~~a~~~~~ 135 (490)
..++..|.+++.
T Consensus 140 dkD~~sA~elLa 151 (629)
T KOG2300|consen 140 DKDFPSALELLA 151 (629)
T ss_pred hccchhHHHHHh
Confidence 678888887743
No 406
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.36 E-value=39 Score=25.11 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhh
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRT 104 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 104 (490)
.-|..++..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577777777777777777777777665
No 407
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.27 E-value=1.3e+02 Score=28.31 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC--CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHH-
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYG--VSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSG- 417 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~- 417 (490)
...++..+-..+...|+.+.|.++++++.-.++ ..|. +..+... ...|. .++. ..+ |...|.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~---F~~~~~~-~~~g~--------~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPS---FSPFRSN-LTSGN--------CRLDYRRPENRQFFLAL 106 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---hhhhhcc-cccCc--------cccCCccccchHHHHHH
Confidence 345666666677778888888777777654210 0000 0000000 00000 0000 011 4444443
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHH-hcCChHHHHHHHHHHhc
Q 042265 418 --LLGGCRIHGNVEIAEAAAEHVMKLKPE-DGGVYKVLADVYA-NADRWEDVVKIRRSLDA 474 (490)
Q Consensus 418 --l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 474 (490)
.+..+.+.|-+..|.++.+-+..++|. ||-.....+..|. ++++++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 344577888888899988888888888 7766666666664 67777777777776544
No 408
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=63.92 E-value=1e+02 Score=27.85 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 330 VYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 330 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
++|+.|...++.|.-..|..+.-.+.+.=.+.....+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 5666666666777766666666666666666667777776665
No 409
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=63.52 E-value=87 Score=26.08 Aligned_cols=93 Identities=12% Similarity=0.140 Sum_probs=50.5
Q ss_pred hhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-----
Q 042265 201 DRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR----- 275 (490)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 275 (490)
+..+++....|.....+-++.-+.+++-+.+-- ..=.+++-.|.+.-++.+..++++.+.+..+.
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LK 169 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLK 169 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 333333455566666665555444444333211 11234555667777788888887777665332
Q ss_pred ---------CChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 042265 276 ---------VDSFLSTGLVDFYAKCGYINTAIEIFES 303 (490)
Q Consensus 276 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 303 (490)
+.-...|.....+.+.|.+|.|..++++
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 1223445555566666666666666653
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.38 E-value=28 Score=29.15 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 408 MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
..|++.++..++.++...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345666666666666666666666666666666666
No 411
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=62.99 E-value=1.2e+02 Score=27.38 Aligned_cols=129 Identities=11% Similarity=-0.007 Sum_probs=69.2
Q ss_pred CHHHHHHHHhccCCC-CeehHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-------CcH
Q 042265 293 YINTAIEIFESSQEK-NLFTWNAMLVGLAM----HGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA-------GLV 360 (490)
Q Consensus 293 ~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------g~~ 360 (490)
+...|..+|+...+. .+.....|...|.. ..+..+|..+|++..+.|..+...+...+...+... .+.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 345555555543332 22333334444433 236778888888888777554322233333333222 133
Q ss_pred HHHHHHHHHhHHhhCCCCCchHHHHHHhhhh----hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 042265 361 DEARKLFDEMESVYGVSKELKHYGCMADLLG----RAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHG 426 (490)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 426 (490)
..|...|.++... + +......+...|. -..+.++|..+|+.....++......+. .+...|
T Consensus 172 ~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g 236 (292)
T COG0790 172 KKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNG 236 (292)
T ss_pred HhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcC
Confidence 4788888887775 4 3333444444443 3457788999998877666644444444 444444
No 412
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.67 E-value=27 Score=21.36 Aligned_cols=33 Identities=9% Similarity=0.154 Sum_probs=23.7
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 122 SQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
.+.|-.+++..+++.|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455677777778888877887777777766654
No 413
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.46 E-value=1.5e+02 Score=28.50 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcc---CCCCeehHHHHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESS---QEKNLFTWNAML 316 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~ 316 (490)
..+......++..+ .|+...+..+++.+...+...+... ..+++... ...+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~----------------v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLEL----------------LEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHH----------------HHHHHhhhhhccCCCccHHHHHH
Confidence 44555555554432 6888888887777654421222221 12222211 112223344555
Q ss_pred HHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 042265 317 VGLAM---HGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG 358 (490)
Q Consensus 317 ~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 358 (490)
+++.+ .++++.|+.++.+|.+.|..|....-..++.++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55554 4789999999999999988887666555555544443
No 414
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.17 E-value=6 Score=37.49 Aligned_cols=95 Identities=16% Similarity=0.057 Sum_probs=65.9
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCCch-HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 042265 351 LVGCSHAGLVDEARKLFDEMESVYGVSKELK-HYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGN 427 (490)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 427 (490)
+..+...+.++.|..++.++.+ ..|+.. .|..=..++.+.+++..|+.-+.+.. ..| ....|..=..++...++
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4455677889999999999886 345433 33333477788888888887766544 333 33444444555667778
Q ss_pred HHHHHHHHHHHHhhCCCCCch
Q 042265 428 VEIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 428 ~~~a~~~~~~~~~~~p~~~~~ 448 (490)
+.+|...|+....+.|+++..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 888888898888899988843
No 415
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=62.14 E-value=67 Score=24.35 Aligned_cols=62 Identities=23% Similarity=0.282 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCCch----HHHHHHHHHhcCChHHHHHHHHHH
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK-------LKPEDGGV----YKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
|...+..|..++...|++++++.-.++++. +..+.-.. ..+-+.++...|+.++|...|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 344455556667777777666655555544 34433322 334456777788888888887653
No 416
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.05 E-value=1.4e+02 Score=29.58 Aligned_cols=50 Identities=12% Similarity=-0.014 Sum_probs=26.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH------------HHHHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 321 MHGLGRLSLVYFSRMIEARIKPDG------------VTILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 321 ~~~~~~~A~~~~~~m~~~~~~p~~------------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
....+++|...|.-.+.. ..|+. .+...+...|..+|+.+.|..+.++..
T Consensus 250 hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred cchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 445566666666555543 22221 123334445666777777766666543
No 417
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.66 E-value=51 Score=24.51 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIE 337 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 337 (490)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777788888888888877766
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.20 E-value=13 Score=28.57 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=22.3
Q ss_pred HHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 042265 86 HTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRAC 121 (490)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 121 (490)
+.+.|.-..|..+|.+|.+.|-+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3444666677778888888777766 366666543
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.06 E-value=17 Score=31.06 Aligned_cols=58 Identities=31% Similarity=0.304 Sum_probs=38.9
Q ss_pred hhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 390 LGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
..+.++.+.|.+++.+...- | ....|-.+...-.+.|+.+.|.+.+++.++++|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 44566777777777665422 3 6666777777667777777777777777777777653
No 420
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.08 E-value=53 Score=25.85 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=44.6
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 397 EEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
+.|.++.+-|- ...............|++..|.++.+.++..+|++..+-...+.+|.+.|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45555555553 444455556667789999999999999999999999888888888877654
No 421
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.01 E-value=1.4e+02 Score=27.33 Aligned_cols=81 Identities=17% Similarity=-0.025 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHHhhCC---CCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042265 360 VDEARKLFDEMESVYGV---SKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAE 436 (490)
Q Consensus 360 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 436 (490)
.+.|.+.|+........ ..++.....+.....+.|..+.-..+++.....++...-..++.++....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 44556666666552011 234444455555555666655555555555544466666666667666667766666666
Q ss_pred HHHh
Q 042265 437 HVMK 440 (490)
Q Consensus 437 ~~~~ 440 (490)
.+..
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 6666
No 422
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.35 E-value=77 Score=30.11 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-----------CCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 042265 180 CNTLIDGYVKAGDLAHARQLFDRMP-----------FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMM 235 (490)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 235 (490)
...|++.++-.||+..|+++++.+. .-.+.+|--+.-+|...+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665543 1145567777888888888888888887654
No 423
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.19 E-value=1.8e+02 Score=28.35 Aligned_cols=102 Identities=19% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCCHHHH-HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh---hhcCCHHHHHHHHhhCCC-C-CCHHH
Q 042265 341 KPDGVTI-LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL---GRAGLIEEALEMIKKMPM-G-GDVFV 414 (490)
Q Consensus 341 ~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~-~-~~~~~ 414 (490)
.|+..|+ +.++.-+.+.|-..+|...+..+.. -.+|+...|..++..= ..+| ...+.++++.+.. - .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 4454444 3456666778888888888888887 5667777787777653 2333 6667777776642 1 38888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCC
Q 042265 415 WSGLLGGCRIHGNVEIAEAAAEHVMK-LKPED 445 (490)
Q Consensus 415 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~ 445 (490)
|...+.--...|..+.+-.++.++.+ ++|..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 88888877788988888888888877 66643
No 424
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.27 E-value=21 Score=31.93 Aligned_cols=37 Identities=8% Similarity=0.164 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL 246 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 246 (490)
-|+.-|....+.||.++|++++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4667888888888888888888888887765444444
No 425
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.31 E-value=23 Score=22.29 Aligned_cols=28 Identities=14% Similarity=-0.066 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 448 VYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
....++.++.+.|++++|.+..+.+.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4567888999999999999999988654
No 426
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=55.96 E-value=36 Score=23.94 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=16.1
Q ss_pred CChHHHHHHHHhcccCCchhHHHHHHHHHhcC
Q 042265 160 HRLRDAQELFDEILYRDVVSCNTLIDGYVKAG 191 (490)
Q Consensus 160 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (490)
.+.+++.++++.+..++..+|.....++...|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34455555555555555555555555544444
No 427
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=55.22 E-value=1.7e+02 Score=26.96 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHH
Q 042265 41 LYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRA 120 (490)
Q Consensus 41 l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 120 (490)
+.++++ |.++-+.+..+-+.++.-......++..++-...=.+...+.+.+..+.. ||......++++
T Consensus 172 IAD~~a----------Rl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRA 239 (340)
T PF12069_consen 172 IADICA----------RLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRA 239 (340)
T ss_pred HHHHHH----------HhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhcCChHHHHHHHHhcccCC-chhHHHHHH
Q 042265 121 CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM-HVYCVFHRLRDAQELFDEILYRD-VVSCNTLID 185 (490)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~ 185 (490)
.+...........++.+.+.....+..+...+. +++....+.+.+..+++++...+ ...|+.+..
T Consensus 240 ls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 240 LSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 428
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=53.98 E-value=41 Score=23.63 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhH
Q 042265 16 IHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNA 95 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 95 (490)
.+.|+.++.+.| +- +......+ -+ ...+.+.|.++++.++..+..+|..+..++...|...-|
T Consensus 18 ~~~v~~~L~~~~-Vl---t~~~~e~I---~~----------~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRG-VF---TPDMIEEI---QA----------AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcC-CC---CHHHHHHH---Hc----------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 367888998888 42 22222222 22 345688999999999999999999999999888765544
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.63 E-value=1.2e+02 Score=26.66 Aligned_cols=53 Identities=13% Similarity=-0.041 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC------CCchHHHHHHHHHhcCChHHHHHHH
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPE------DGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
.+...|...|++++|.++|+.+...... ...+...+..++.+.|+.++...+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444466666666666666666442111 1124445555666666666665553
No 430
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.62 E-value=1.5e+02 Score=25.73 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=26.5
Q ss_pred HhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 042265 301 FESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG 344 (490)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 344 (490)
|+-..+|.+.....++..| ..+++++|.+++.++.+.|..|..
T Consensus 231 fKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 231 FKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH
Confidence 3333445555555555544 345677788888887777776643
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.46 E-value=76 Score=26.19 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhHHh
Q 042265 360 VDEARKLFDEMESV 373 (490)
Q Consensus 360 ~~~a~~~~~~~~~~ 373 (490)
.+.|..+|+.+.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 56677777777664
No 432
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.19 E-value=1.5e+02 Score=25.63 Aligned_cols=111 Identities=8% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHHHHH--hccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC--CchhHHHHHHHHHh
Q 042265 114 FPFLLRAC--SQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR--DVVSCNTLIDGYVK 189 (490)
Q Consensus 114 ~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~ 189 (490)
|...++++ ...++++.|.+.+ ............++.++...|+.+.|+.+++....+ +...-..++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HH
Q ss_pred cCCHHHHHHHHhhCCCCC-eehHHHHHHHHH----hcCChhHHHHH
Q 042265 190 AGDLAHARQLFDRMPFRD-AVSWGTLVAGYA----QSDQCEEAIQL 230 (490)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~----~~g~~~~A~~~ 230 (490)
++.+.+|..+-+....+. ...+..++..+. +.+..++-..+
T Consensus 153 ~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred cCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 433
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.03 E-value=1.6e+02 Score=25.75 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-
Q 042265 214 LVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSAC-ARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC- 291 (490)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 291 (490)
+++.+-..|+++++.+.++++...+...+..--+.+-.+| ...|....+.+++..+.+..-.-.......++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred -----CCHHHHHHHHhccCCCCeehHHHHHHHHHHcCCh-----------------HHHHHHHHHHHH---CCCCCCHHH
Q 042265 292 -----GYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLG-----------------RLSLVYFSRMIE---ARIKPDGVT 346 (490)
Q Consensus 292 -----~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~A~~~~~~m~~---~~~~p~~~~ 346 (490)
.--.+...+++...-|....-...+-.+-..|++ +.|.+.|++..+ ..++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHhh-----ccCcHHHHHHHHHHhHH
Q 042265 347 ILGALVGCS-----HAGLVDEARKLFDEMES 372 (490)
Q Consensus 347 ~~~l~~~~~-----~~g~~~~a~~~~~~~~~ 372 (490)
+..++--++ ..|+.++|.++-+....
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.02 E-value=2e+02 Score=27.03 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=68.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHH---HHHHH
Q 042265 143 ICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTL---VAGYA 219 (490)
Q Consensus 143 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~ 219 (490)
|-...++..+...+.+.|+.+.|.+++++.+--=..++......+... ......-+.--...|...|-++ |..+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~--~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSN--LTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccCccccCCccccchHHHHHHHHHHHHHH
Confidence 566777777888888888888888877775211000000000000000 0000000000001144444443 45677
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHHH
Q 042265 220 QSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACA-RLGELEQGKNIHRYIEL 271 (490)
Q Consensus 220 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 271 (490)
+.|-+..|+++.+-+...+..-|......+|..|+ +.++++--+++.+....
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 88888888888888887664446666666666664 55666666666665443
No 435
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.00 E-value=79 Score=26.11 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHCCCCCCH--HHHH-----HHHHHhhccCcHHHHHHHHHHhHH
Q 042265 325 GRLSLVYFSRMIEARIKPDG--VTIL-----GALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 325 ~~~A~~~~~~m~~~~~~p~~--~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.+.|+.+|+.+.+.-..|.. .... ..+..|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 56777777777665333311 1111 122345666666666666666654
No 436
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.64 E-value=1.8e+02 Score=26.33 Aligned_cols=149 Identities=12% Similarity=0.109 Sum_probs=66.5
Q ss_pred hHHHHhhcc-CCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 042265 62 SYALSIFNN-IPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKL 140 (490)
Q Consensus 62 ~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 140 (490)
.-|.++|+. +.+.++ |.+++.+.+.+--+.-.++ .+|+..+-......+...|--+...-.-.++. .
T Consensus 184 ~F~~~lFk~~~~Ek~i---~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~-~ 251 (412)
T KOG2297|consen 184 SFAVKLFKEWLVEKDI---NDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQS-E 251 (412)
T ss_pred HHHHHHHHHHHhhccH---HHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHH-H
Confidence 456667764 334443 6667766665544444443 36666665555554444432111110000000 0
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHh-ccc---CCc----hhHHHHHHHHHhc-CCHHHHHHHHhhCCCCCeehH
Q 042265 141 GFICDVFVLNSLMHVYCVFHRLRDAQELFDE-ILY---RDV----VSCNTLIDGYVKA-GDLAHARQLFDRMPFRDAVSW 211 (490)
Q Consensus 141 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~---~~~----~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 211 (490)
..-...-..|..-..+...+++......+ |.. |++ ..|..++++--=. ..---|.+.++. ...|
T Consensus 252 --~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh-----lK~y 324 (412)
T KOG2297|consen 252 --GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH-----LKQY 324 (412)
T ss_pred --HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH-----HHhh
Confidence 00011112222223333334444333332 211 222 3577666653211 111223334433 3468
Q ss_pred HHHHHHHHhcCChhHHHH
Q 042265 212 GTLVAGYAQSDQCEEAIQ 229 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~ 229 (490)
..|+.+++.+|+.+-.+-
T Consensus 325 aPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 325 APLLAAFCSQGQSELELL 342 (412)
T ss_pred hHHHHHHhcCChHHHHHH
Confidence 889999999998775543
No 437
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.53 E-value=71 Score=26.72 Aligned_cols=46 Identities=22% Similarity=0.122 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 429 EIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 429 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+..++..++..+..| ++.+|..++.++...|+.++|.+..+++...
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334455555555667 4669999999999999999999999888653
No 438
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.45 E-value=42 Score=19.02 Aligned_cols=16 Identities=13% Similarity=-0.118 Sum_probs=7.2
Q ss_pred HHHHHhcCCHHHHHHH
Q 042265 419 LGGCRIHGNVEIAEAA 434 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~ 434 (490)
...+...|++++|+.+
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3334445555555555
No 439
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.29 E-value=1.9e+02 Score=26.48 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHh---hCCCCCchHHHHHH-hhhhh----cCCHHHHHHHHhhCCC---CCCHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESV---YGVSKELKHYGCMA-DLLGR----AGLIEEALEMIKKMPM---GGDVF 413 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~-~~~~~----~g~~~~A~~~~~~~~~---~~~~~ 413 (490)
..+......|++.||.+.|.+.+.+..++ .|.+.|...+..=+ -.|.. ....++|..++++-.+ ++--.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34555666788888888888777665443 25555554432211 12222 2334555555554321 11223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
+|..+- |....++.+|-.+|-..+.
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 333221 3445677777777777665
No 440
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.15 E-value=79 Score=24.64 Aligned_cols=67 Identities=13% Similarity=-0.008 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-hCCCC-CchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 409 GGDVFVWSGLLGGCRIHG---NVEIAEAAAEHVMK-LKPED-GGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 409 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.++..+--.+..++.+.. +..+.+.+++...+ -.|.. ....+.|+.++.+.|+|+++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 445666667778877665 45677888888886 44433 345667888999999999999998887665
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.00 E-value=3.6e+02 Score=29.62 Aligned_cols=121 Identities=12% Similarity=-0.003 Sum_probs=72.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLG 420 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~ 420 (490)
-|..+++.+.+.+-.+.+.++-..+.+ ..+++ +.+++.+.+.....|.+-+|...+-+..+.. -......++.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvi 1062 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 366677777777888888888777776 33333 2356677777778888888877665544321 2234455555
Q ss_pred HHHhcCCH------------HHHHH-HHHHHHhhCCCCCchHHHHHH-HHHhcCChHHHHHH
Q 042265 421 GCRIHGNV------------EIAEA-AAEHVMKLKPEDGGVYKVLAD-VYANADRWEDVVKI 468 (490)
Q Consensus 421 ~~~~~~~~------------~~a~~-~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~ 468 (490)
.+...|.+ ++... +++..-+..|....-|+.++. .+.+.+++.+|-.+
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 55555543 34444 444444444433334444444 45677888877665
No 442
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=51.62 E-value=31 Score=30.92 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=49.6
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKM-PMGG-DVFVWSG-LLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKV 451 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 451 (490)
....|+..|...+.-..+.|.+.+.-.++.+. ..+| ++..|-. -..-+...++++.+..++.+.++++|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34445555555554444556666666666553 3445 5555533 2223566788888888888888888888877765
Q ss_pred HHH
Q 042265 452 LAD 454 (490)
Q Consensus 452 l~~ 454 (490)
..+
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 443
No 443
>PF15469 Sec5: Exocyst complex component Sec5
Probab=51.58 E-value=48 Score=27.47 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHhcCCCCCCCceeEEE
Q 042265 460 DRWEDVVKIRRSLDAGKIKKNAGCSLIQ 487 (490)
Q Consensus 460 g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 487 (490)
...++..++++.+.+.+...+|.+.|+.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4677788888888888999999988864
No 444
>PRK10941 hypothetical protein; Provisional
Probab=51.38 E-value=1.8e+02 Score=25.98 Aligned_cols=74 Identities=9% Similarity=-0.049 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMA 387 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 387 (490)
.+.+-.+|.+.++++.|+.+.+.+... .| ++.-+.--.-.|.+.|.+..|..-++...+.....|+.......+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 344555666777777777777776664 23 233344344446667777777777777666433344444433333
No 445
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.32 E-value=99 Score=22.94 Aligned_cols=39 Identities=18% Similarity=0.053 Sum_probs=15.2
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 042265 126 SHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDA 165 (490)
Q Consensus 126 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 165 (490)
..++|..+.+.+...+- -...+--+.+..+.+.|++++|
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH
Confidence 34455555555544431 1122222223334445555555
No 446
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=50.79 E-value=2.2e+02 Score=26.80 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=59.6
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCC-----ch
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMPMGG--------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDG-----GV 448 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~-----~~ 448 (490)
..|...+...|+.++|..++.+..... -+.....-++.|...+|+-.|.-+-+++.. .+.++. ..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 345666677788888888877765321 111112224456777888888777777766 222221 24
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 042265 449 YKVLADVYANADRWEDVVKIRRSLDAGKIKKN 480 (490)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 480 (490)
|..++....+.+.|=++-+.++.+.+.|--+.
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 56666666677778888888888776654333
No 447
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.51 E-value=41 Score=21.95 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 042265 146 VFVLNSLMHVYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 172 (490)
..-.-.+|.++...|++++|.++++++
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333445566666666666666665554
No 448
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.47 E-value=90 Score=24.72 Aligned_cols=63 Identities=6% Similarity=-0.052 Sum_probs=40.2
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 98 LFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 98 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
+.+.+++.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 444556666665443 345666666666668888888888887766666655555566666553
No 449
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.36 E-value=57 Score=19.92 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=17.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPDNIALVSAL 250 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 250 (490)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 44455556666666666666555555554443
No 450
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.10 E-value=3.4e+02 Score=28.71 Aligned_cols=287 Identities=11% Similarity=-0.040 Sum_probs=0.0
Q ss_pred HHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHH
Q 042265 154 HVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCN 233 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (490)
+.|...|++++|+++-+.-+..=..++..-...|.+.+++..|.+++.++ ...|..+.--+....+.+ +++.|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC--Ceeh
Q 042265 234 MMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK--NLFT 311 (490)
Q Consensus 234 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~ 311 (490)
=+-..++|...+-..++....-.-..++--.+- .+.+.....+. ...+...+.|...... +...
T Consensus 441 KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~-----~~de~~~en~~---------~~~~~~~re~~~~~~~~~~~~n 506 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTWLLELYLEQLNDLD-----STDEEALENWR---------LEYDEVQREFSKFLVLHKDELN 506 (911)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhccc-----ccChhHHHHHH---------HHHHHHHHHHHHHHHhhHHhhh
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
..+.-+.+...|+.+....+-.-|.+ |..++......+.+++|.+++..-... -.-....-..
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~--------el~yk~ap~L 569 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNP--------ELFYKYAPEL 569 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccch--------hhHHHhhhHH
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh-hCCCCCchHHHHHHHHHhcCChHHHHH
Q 042265 392 RAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIH---GNVEIAEAAAEHVMK-LKPEDGGVYKVLADVYANADRWEDVVK 467 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (490)
....+.+....+....+.........++..+... .....++..++-... ..-.++..++.+...|....+-+.-..
T Consensus 570 i~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~ 649 (911)
T KOG2034|consen 570 ITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLY 649 (911)
T ss_pred HhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHH
Q ss_pred HHHHHhcCC
Q 042265 468 IRRSLDAGK 476 (490)
Q Consensus 468 ~~~~m~~~~ 476 (490)
+-..+...+
T Consensus 650 le~~~~~~~ 658 (911)
T KOG2034|consen 650 LEIIKFMKS 658 (911)
T ss_pred HHHHhhccc
No 451
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.90 E-value=1.8e+02 Score=25.42 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=22.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHH
Q 042265 220 QSDQCEEAIQLFCNMMDLDIKPDNIA-LVSALSACARLGELEQGKNIHRYIEL 271 (490)
Q Consensus 220 ~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 271 (490)
...+++.|+..|.+.+. +.|+..+ |+.-+.++.+..+++.+..--....+
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 33445555555544443 2344422 23444444455555555444444333
No 452
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.40 E-value=1.2e+02 Score=23.32 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 398 EALEMIKKMPMG----GDVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 398 ~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
++.++|+.|..+ ..+..|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 455555444322 25555666666666666666666666553
No 453
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.62 E-value=38 Score=29.02 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=36.8
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
..+.++.+.+.+++.++.. -.+.....|-.+...-.+.|+++.|.+-+++..
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 4566777788888877776 445556667677777777888888877777644
No 454
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=48.61 E-value=1e+02 Score=29.46 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=29.7
Q ss_pred HHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 402 MIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 402 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+|......| -..++..-+..+.+.+++..|-.+.++++++.|+..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 344444443 334566666778899999999999999999988653
No 455
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.39 E-value=2.2e+02 Score=26.19 Aligned_cols=112 Identities=15% Similarity=0.122 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh---cCCHHHHHHH
Q 042265 326 RLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR---AGLIEEALEM 402 (490)
Q Consensus 326 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 402 (490)
+.-+.++++..+.+. -+.......+..+.+..+.++..+.|+++.. ..+-+...|...++.... .-.+++...+
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~--~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLF--KNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 344555566555522 3444455555666666666666666666665 233345555544444322 1223333333
Q ss_pred Hhh-------CCCC-----C-----C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 403 IKK-------MPMG-----G-----D---VFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 403 ~~~-------~~~~-----~-----~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
|.+ .... + . ..++..+...+...|..+.|..+++.+++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHH
Confidence 322 1111 0 1 12333344445688999999999999999
No 456
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.31 E-value=26 Score=27.06 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042265 218 YAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSA 252 (490)
Q Consensus 218 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 252 (490)
....|.-..|..+|.+|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34557778899999999999999986 4455544
No 457
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.11 E-value=44 Score=29.98 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG 349 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 349 (490)
-|+..|....+.||+++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 456777777888888888888888888776654455443
No 458
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=46.54 E-value=1.3e+02 Score=23.09 Aligned_cols=111 Identities=12% Similarity=0.177 Sum_probs=62.6
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhc-----------cCCc
Q 042265 59 DPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ-----------LCSH 127 (490)
Q Consensus 59 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-----------~~~~ 127 (490)
+++.-|..++.+....+ .+...++.+....-.-.+.++..++....-.|.. ..+..+..|.+ .+..
T Consensus 3 nNp~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~e-fl~~yI~~cI~~ce~~kd~~~q~R~V 79 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQE-FLHMYISNCIKSCESIKDKYMQNRLV 79 (126)
T ss_pred CcHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHH-HHHHHHHHHHHHHHhhcccccccchh
Confidence 34455555554443221 2555666666666666667777776665433333 23333333322 1223
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 042265 128 SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 128 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 172 (490)
.-.-.++..+.+.++......+..+-..|.+..+..+|..+|+-+
T Consensus 80 Rlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 80 RLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 334455677777776666666677777777777888888877654
No 459
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=46.45 E-value=3.4e+02 Score=27.80 Aligned_cols=28 Identities=7% Similarity=-0.103 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhc---cCcHHHHHHHHHHhHH
Q 042265 345 VTILGALVGCSH---AGLVDEARKLFDEMES 372 (490)
Q Consensus 345 ~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 372 (490)
.-+..+|..|.+ ..++.+|.++|--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 445666666543 4677777777766655
No 460
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=46.37 E-value=2.6e+02 Score=26.36 Aligned_cols=89 Identities=10% Similarity=-0.074 Sum_probs=48.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH------------HHHHhhccCcHHHHHHHHHHhHHhhCCCCCc--
Q 042265 315 MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG------------ALVGCSHAGLVDEARKLFDEMESVYGVSKEL-- 380 (490)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 380 (490)
+...+-..|+.++|..++.+.. ..||.+ -++.|...+|+-.|.-+-+++...+-..|+.
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 3444555666666666554432 122222 1344556667777766666666543334443
Q ss_pred ---hHHHHHHhhhhhcCCHHHHHHHHhhCCCCC
Q 042265 381 ---KHYGCMADLLGRAGLIEEALEMIKKMPMGG 410 (490)
Q Consensus 381 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (490)
..|+.++......+.+=.+-+.++.+-..|
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 245666666666666666666666654333
No 461
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=44.40 E-value=2.6e+02 Score=25.79 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh------ccCcHHHHHHHHHHhHHhhCCCCCch-HHHHHHhhhhhcCCHH
Q 042265 325 GRLSLVYFSRMIEARIKPDGVTILGALVGCS------HAGLVDEARKLFDEMESVYGVSKELK-HYGCMADLLGRAGLIE 397 (490)
Q Consensus 325 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 397 (490)
.+++..++++....+. |.++.....|.++- ..-+|.....+|+.+... .|++. +.|- .-+..+..-.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNR-AVAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehH-HHHHHHhhhHH
Confidence 5678888888877764 88888888887763 345788888888888764 34433 2332 22344555567
Q ss_pred HHHHHHhhCCCCC---CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 398 EALEMIKKMPMGG---DVFVW-SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 398 ~A~~~~~~~~~~~---~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.++.+.+.+...| +...| ..-...+.+.|+.++|...|++++.+.++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 7788887776665 22223 3334447889999999999999999777644
No 462
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.34 E-value=2.5e+02 Score=25.55 Aligned_cols=87 Identities=13% Similarity=0.154 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHH----------hcCCHHHHHHHH
Q 042265 131 QTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYV----------KAGDLAHARQLF 200 (490)
Q Consensus 131 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~ 200 (490)
.++++.+.+.++.|.-..+.=+.-.+.+.=.+...+.+++.+..-. .-|..++..|+ -.||+....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4566667777777777666666666666666777777777764321 11444444443 357788888887
Q ss_pred hhCCCCCeehHHHHHHHH
Q 042265 201 DRMPFRDAVSWGTLVAGY 218 (490)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~ 218 (490)
+.-..-|....-.+...+
T Consensus 342 Q~yp~tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 342 QNYPTTDISKMLAVADSL 359 (370)
T ss_pred hcCCCCCHHHHHHHHHHH
Confidence 776555554444444333
No 463
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=43.97 E-value=88 Score=27.69 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=34.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
..+.+.++++.|....++.+.++|.++.-..--+-+|.+.|.+.-|.+-++...
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~ 242 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV 242 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH
Confidence 345666677777777777777777666556666666666666666666655533
No 464
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.91 E-value=2.1e+02 Score=30.21 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDE 362 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 362 (490)
++|..+.+.|-.+-|+.+.+.-... ...+...|+.+.|++.-+++ -+..+|..|......+|+.+-
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR--------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR--------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh--------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHH
Confidence 3444555666666666554432211 11234557777777655443 256778888888888888888
Q ss_pred HHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 363 ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
|+..|++... |..|--.|.-.|+.++-.++.+....+.|..+.. ....-.|+.++-..+++..-..
T Consensus 691 aEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~---qnalYl~dv~ervkIl~n~g~~- 756 (1202)
T KOG0292|consen 691 AEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQF---QNALYLGDVKERVKILENGGQL- 756 (1202)
T ss_pred HHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHH---HHHHHhccHHHHHHHHHhcCcc-
Confidence 8888877665 4556666777788887777766655444433321 1112346777766666654221
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 443 PEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+-+|. .-...|.-++|.++.++...+
T Consensus 757 ---~layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 757 ---PLAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred ---cHHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 11222 123457777788887777664
No 465
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.44 E-value=2.5e+02 Score=25.25 Aligned_cols=50 Identities=16% Similarity=-0.069 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC----Cee-------hHHHHHHHHHHcCChHHHHHHH
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQEK----NLF-------TWNAMLVGLAMHGLGRLSLVYF 332 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-------~~~~l~~~~~~~~~~~~A~~~~ 332 (490)
.+.+-..+.+++++|+..+.++... +.. +...+...|...|++..--++.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4556677889999999999887754 222 3344556667777666554443
No 466
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=43.24 E-value=2.7e+02 Score=25.68 Aligned_cols=104 Identities=10% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHhHHhhCCCCCc-hHHHHHHhhhhhcCCHHHHHHHHhhCC------CCCCHHHHHHHHHH--HHhcCCHHHHHHH
Q 042265 364 RKLFDEMESVYGVSKEL-KHYGCMADLLGRAGLIEEALEMIKKMP------MGGDVFVWSGLLGG--CRIHGNVEIAEAA 434 (490)
Q Consensus 364 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~l~~~--~~~~~~~~~a~~~ 434 (490)
.++|......+..+.++ .....++....+.++.++|+++++++. ..|++..+.....+ +...|+.+++.+.
T Consensus 58 l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ 137 (380)
T KOG2908|consen 58 LQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKL 137 (380)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHH
Q ss_pred HHHHHh-------hCCCCCchHHHHHHHHHhc-CChHHHHH
Q 042265 435 AEHVMK-------LKPEDGGVYKVLADVYANA-DRWEDVVK 467 (490)
Q Consensus 435 ~~~~~~-------~~p~~~~~~~~l~~~~~~~-g~~~~A~~ 467 (490)
++...+ ..|+=...|+.+..-|.+. |++....+
T Consensus 138 ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 138 LDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHH
No 467
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.18 E-value=3.2e+02 Score=26.92 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCch
Q 042265 110 DFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDV 146 (490)
Q Consensus 110 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 146 (490)
+...+..++..+...+....+..+++.+.+.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 4444555555554444456788888888888866543
No 468
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.85 E-value=32 Score=22.78 Aligned_cols=49 Identities=8% Similarity=-0.097 Sum_probs=27.9
Q ss_pred CCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 109 PDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 109 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
|....++.++...+...-.+.+...+.+..+.| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444555666666666666666666666666666 3455555555555544
No 469
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.77 E-value=47 Score=21.69 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 415 WSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 415 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
--.++.++...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34456666677777777766666544
No 470
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.73 E-value=3.6e+02 Score=26.97 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=40.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHh
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACA-RLGELEQGKNIHRYIELN---QIRVDSFLSTGLVDFYAK 290 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 290 (490)
|..+.+.|-|..|.++-+-+......-|+.....+|..|+ +..++.=.+++++..... ..-|+...-.+|...|..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3445566777777776666665543335555555555553 444555445555444322 223444444445555554
Q ss_pred cCC
Q 042265 291 CGY 293 (490)
Q Consensus 291 ~~~ 293 (490)
...
T Consensus 429 ~~~ 431 (665)
T KOG2422|consen 429 KNE 431 (665)
T ss_pred cCC
Confidence 433
No 471
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=42.59 E-value=68 Score=22.90 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=15.8
Q ss_pred CChHHHHHHHHhcccCCchhHHHHHHHHHh
Q 042265 160 HRLRDAQELFDEILYRDVVSCNTLIDGYVK 189 (490)
Q Consensus 160 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 189 (490)
.+.+++.++++.+..+++.+|..+..++..
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 344555555555555555555555555543
No 472
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=42.30 E-value=3.1e+02 Score=26.11 Aligned_cols=135 Identities=20% Similarity=0.178 Sum_probs=73.6
Q ss_pred CCcccHHHHHHHHhcc----CCcHHHHHHHHHH---HHhCCC-----CchhHHHHHHHHHHhcCChHHHHHHHHhccc--
Q 042265 109 PDFYSFPFLLRACSQL----CSHSLAQTIHSQV---LKLGFI-----CDVFVLNSLMHVYCVFHRLRDAQELFDEILY-- 174 (490)
Q Consensus 109 p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~---~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 174 (490)
|.-...+.+++-|.-. =..+...++++.. ...|+. .+......++. ...||...|+..++.+..
T Consensus 143 PsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~--~s~GD~R~aLN~LE~~~~~~ 220 (436)
T COG2256 143 PSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR--LSNGDARRALNLLELAALSA 220 (436)
T ss_pred CCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHH--hcCchHHHHHHHHHHHHHhc
Confidence 4444555565544221 1334445555552 223443 23334444333 235888888777776522
Q ss_pred -CCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHH
Q 042265 175 -RDVVSCNTLIDGYVKAGDLAHARQLFDRMP---FRDAVSWGTLVAGYAQS---DQCEEAIQLFCNMMDLDIKPDNIALV 247 (490)
Q Consensus 175 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~ 247 (490)
++.. -..+...+++.+-. .++...+-.+++++.|+ .+++.|+-++..|++.|-.|-...-.
T Consensus 221 ~~~~~------------~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARR 288 (436)
T COG2256 221 EPDEV------------LILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARR 288 (436)
T ss_pred CCCcc------------cCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHH
Confidence 2210 01233333333321 33556777788887664 68999999999999998767655555
Q ss_pred HHHHHHHccC
Q 042265 248 SALSACARLG 257 (490)
Q Consensus 248 ~l~~~~~~~~ 257 (490)
.++-++-.-|
T Consensus 289 lv~~AsEDIG 298 (436)
T COG2256 289 LVRIASEDIG 298 (436)
T ss_pred HHHHHHhhcc
Confidence 5555554444
No 473
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=41.87 E-value=4.1e+02 Score=27.31 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=14.3
Q ss_pred hhhcCCHHHHHHHHhhCCCCC
Q 042265 390 LGRAGLIEEALEMIKKMPMGG 410 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~ 410 (490)
+...|++++|++.++++..-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 357788888888888877666
No 474
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.30 E-value=1.4e+02 Score=30.28 Aligned_cols=76 Identities=11% Similarity=-0.047 Sum_probs=40.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhccCcHHH--HHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 314 AMLVGLAMHGLGRLSLVYFSRMIEA--RIKPDGVTILGALVGCSHAGLVDE--ARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
+|..+|..+|++..+.++++.+... |-+.-...++..++.+.+.|.++- ..+-..+..+...+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6677777777777777777777653 222233456666666666665432 111111111111344555666555544
No 475
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.18 E-value=1.7e+02 Score=23.22 Aligned_cols=61 Identities=3% Similarity=0.004 Sum_probs=31.2
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY 293 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (490)
..+.+.|++++..- ..++..+...++.-.|..+++.+.+.+...+..|.-.-++.+...|-
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34444555554432 23444445554555666666666665544544444444555555553
No 476
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.04 E-value=1.2e+02 Score=26.67 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=12.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNM 234 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m 234 (490)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555666666666666554
No 477
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.97 E-value=70 Score=30.73 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=68.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcC
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIKPDGVTI-LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAG 394 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (490)
+.-+...+.++.|..++.+.++. .||...| ..-..++.+.+++..|..-..++.+. .+.....|-.=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 34456778899999999999885 6655444 33347788999999999888888873 2223333333344555667
Q ss_pred CHHHHHHHHhhCC-CCCCHHHHHHHHHHH
Q 042265 395 LIEEALEMIKKMP-MGGDVFVWSGLLGGC 422 (490)
Q Consensus 395 ~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 422 (490)
.+.+|...|+... ..|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 7788888887754 455555555555444
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.50 E-value=1.2e+02 Score=24.82 Aligned_cols=59 Identities=7% Similarity=-0.166 Sum_probs=29.8
Q ss_pred hCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 042265 104 TVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR 163 (490)
Q Consensus 104 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 163 (490)
+.|++++..- ..++..+....+.-.|.++++.+.+.+...+..|...-++.+.+.|-+.
T Consensus 19 ~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 19 QRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3444433332 2333333334445566666666666655555555555555566655543
No 479
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.42 E-value=3.1e+02 Score=25.59 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc----ccHHHHHHHHhccCCcHHHHHHHHHHHHh----C--CCCchhH
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF----YSFPFLLRACSQLCSHSLAQTIHSQVLKL----G--FICDVFV 148 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g--~~~~~~~ 148 (490)
.+.+-.++.+.+.+..-+.+..+.... ..|.. .....++..|.+.+++..+...++.-.-. + .+|.. .
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~-f 182 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKY-F 182 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHH-H
Confidence 344555555666665544444444332 12222 23445566666777776665554432211 1 11111 1
Q ss_pred HHHHH---HHHHhcCChHHHHHHHHhccc
Q 042265 149 LNSLM---HVYCVFHRLRDAQELFDEILY 174 (490)
Q Consensus 149 ~~~li---~~~~~~g~~~~A~~~~~~~~~ 174 (490)
+.-+. ..|.-..+++.|+.+++..+.
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 11111 124456788999988888754
No 480
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.42 E-value=1.4e+02 Score=22.97 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=25.5
Q ss_pred HHHHHHHHHh--hCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 042265 431 AEAAAEHVMK--LKPEDGGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 431 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
..++|+.+.+ +....+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666655 444445556666777777777777777765
No 481
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.31 E-value=1.5e+02 Score=30.04 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=57.1
Q ss_pred HHHHHHHcCCCchhHHHHHHHhhhCC--CCCCcccHHHHHHHHhccCCcHH------HHHHHHHHHHhCCCCchhHHHHH
Q 042265 81 TIIRAHTLFSSPLNAVVLFSQMRTVS--IPPDFYSFPFLLRACSQLCSHSL------AQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
+|+.+|..+|++..+.++++...... -+.=...+|..|+-..+.|.++- +.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887642 22223457888888888887653 333333322 44567777777
Q ss_pred HHHHHhcCChHHHHHHHHhccc
Q 042265 153 MHVYCVFHRLRDAQELFDEILY 174 (490)
Q Consensus 153 i~~~~~~g~~~~A~~~~~~~~~ 174 (490)
+.+-...-+-.-.+-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6655443333333444444443
No 482
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=38.25 E-value=48 Score=29.82 Aligned_cols=65 Identities=9% Similarity=-0.085 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHH-HHHHHHhcCChHHHHHHHHHHhcC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKV-LADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|+..|...+....+.|.+.+...++.++++..|.+...|.. -..-+...++++.+..+|.+-.+.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 88899998888888899999999999999999999988876 445567789999999888755444
No 483
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.98 E-value=1.5e+02 Score=24.24 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=31.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 235 MDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 235 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
.+.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|.-.-+..+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555554433 33333333344456666666666666555555555555566665543
No 484
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.53 E-value=3.7e+02 Score=25.56 Aligned_cols=56 Identities=2% Similarity=-0.082 Sum_probs=36.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--ccCChHHHHHHHHHHHHc
Q 042265 216 AGYAQSDQCEEAIQLFCNMMDLDIKPDNI--ALVSALSACA--RLGELEQGKNIHRYIELN 272 (490)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 272 (490)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455778888888888888876 555444 3444444443 456677888887776654
No 485
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.33 E-value=1.1e+02 Score=21.78 Aligned_cols=59 Identities=14% Similarity=0.255 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCC
Q 042265 16 IHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSS 91 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 91 (490)
...|+..+...| + -++.-+..+ .+ ...+.+.+.++++.++..+..+|..+..++...+.
T Consensus 22 ~~~v~~~L~~~g-v---lt~~~~~~I---~~----------~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKD-I---LTDSMAESI---MA----------KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcC-C---CCHHHHHHH---Hc----------CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 457888888888 4 233333322 22 33567889999999998888999999999866554
No 486
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.13 E-value=5e+02 Score=27.03 Aligned_cols=149 Identities=15% Similarity=0.211 Sum_probs=86.5
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc----------ccHHHHHHHHhccCCcHHHHHHHHHHHHhC--CCCc
Q 042265 78 SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF----------YSFPFLLRACSQLCSHSLAQTIHSQVLKLG--FICD 145 (490)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~ 145 (490)
+-..++-.|....+++..+++.+.+++. ||. ..|...++---+-|+-++|+...-.+.+.. +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3445566677778899999999998874 332 234444444445688888988877777653 3455
Q ss_pred hhHHHHHH-------HHHHhcCChHHHHHHHHhcc--cCC---chhHHHHHHH---------------------HHhcCC
Q 042265 146 VFVLNSLM-------HVYCVFHRLRDAQELFDEIL--YRD---VVSCNTLIDG---------------------YVKAGD 192 (490)
Q Consensus 146 ~~~~~~li-------~~~~~~g~~~~A~~~~~~~~--~~~---~~~~~~l~~~---------------------~~~~~~ 192 (490)
......-| +.|...+..+.|.+.|++.- +|. -..+..|+.+ +++.|.
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGA 359 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccch
Confidence 43322111 22334456677888888873 332 2233334333 334454
Q ss_pred HHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 042265 193 LAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLD 238 (490)
Q Consensus 193 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 238 (490)
+++...+|+- . ....+-.-.+++.+|.+.-+.|.+..
T Consensus 360 leklq~YWdV------~---~y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 360 LEKLQEYWDV------A---TYFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred HHHHHHHHhH------H---HhhhhhhhccCHHHHHHHHHHHhccC
Confidence 4444444422 1 22344455678888888888887753
No 487
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=37.09 E-value=1.5e+02 Score=20.95 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 042265 132 TIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 132 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 172 (490)
++|+-....|+..|+.+|..+++.+.-.=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56666666777777777777777666655666666666665
No 488
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.80 E-value=3.8e+02 Score=25.52 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=45.3
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLD--IKPDNIALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
..+.-+...|...|+.+.|++.|...++-- .+-....+..+|..-.-.|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 357778888899999999999998865431 1122335566666667788888888888777665
No 489
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=36.35 E-value=3.2e+02 Score=24.60 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh
Q 042265 340 IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 340 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
-.++..+...++..+++.++|.+-.++++......+...|...|..+++.....|+..-..++.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 455666667777777777777777777776665323445666777777777777777766666654
No 490
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.85 E-value=2.4e+02 Score=28.35 Aligned_cols=47 Identities=11% Similarity=-0.048 Sum_probs=27.4
Q ss_pred hhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042265 390 LGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAE 436 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 436 (490)
+...|..+.|..+|+.+....+...+......+.+.|-..+|..+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 52 LHDVNETERAYALYETLIAQNNDEARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhhhhhhHhHHHHHHHHHHhCCcchHHHHHHHHHhhhhhhHHHHHHH
Confidence 44455666666666665533322555555566666666666666666
No 491
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.04 E-value=1.9e+02 Score=22.88 Aligned_cols=61 Identities=7% Similarity=0.082 Sum_probs=36.5
Q ss_pred HhhhCCCCCCcccHHHHHHHHhcc-CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 042265 101 QMRTVSIPPDFYSFPFLLRACSQL-CSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL 162 (490)
Q Consensus 101 ~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 162 (490)
.+.+.|++++.. -..++..+... +..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344556554433 23444444443 45667888888888877666666666666666666643
No 492
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.87 E-value=4.6e+02 Score=25.86 Aligned_cols=29 Identities=0% Similarity=-0.051 Sum_probs=21.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPDNIALV 247 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 247 (490)
.+.++++.|..++.+|...|..|....-.
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~r~ 282 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLIQQ 282 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 45688888888888888888766554333
No 493
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.85 E-value=68 Score=28.81 Aligned_cols=55 Identities=11% Similarity=0.244 Sum_probs=24.0
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 392 RAGLIEEALEMIKKM-PMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+.|+.++|.++|+.. ...| ++..+..+.......++.-+|.++|-+++.+.|.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 344444444444432 1222 333333344333344444555555555555555443
No 494
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=34.78 E-value=3.4e+02 Score=24.44 Aligned_cols=56 Identities=9% Similarity=0.151 Sum_probs=34.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC-----CCeehHHHHHHHHHHcCChHHHHH
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-----KNLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
.++..+...+++.+++.+++.+-.++++.... .|...|..+|......|+..-...
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 55556666666666666666666666655432 356667777777777776654433
No 495
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.57 E-value=3.6e+02 Score=24.59 Aligned_cols=58 Identities=10% Similarity=-0.036 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
+.....++....+.|+.+.-..+++.... .++..-...++.+++...+.+...++++.
T Consensus 169 ~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 169 PDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 33334444444455554443333333332 12344444455555555555544444443
No 496
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=34.34 E-value=2.2e+02 Score=21.95 Aligned_cols=57 Identities=19% Similarity=0.122 Sum_probs=30.6
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMPMGGDV-FVWSGLLGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 437 (490)
.+..++.-++.-.|..++|.++++...-.+.- ..-..++..|....+.++..++-++
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455555666666666666666665533322 2223455556666655555554444
No 497
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=34.26 E-value=1.4e+02 Score=20.90 Aligned_cols=59 Identities=5% Similarity=-0.020 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHH
Q 042265 12 TIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHT 87 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 87 (490)
+.+.+.+|++.+...| + -+..-+..+- + ..-+.+.|.++++-++..+..++..+..++.
T Consensus 13 ~v~~v~~ilD~L~~~~-V---it~e~~~~I~---a----------~~T~~~kar~Lld~l~~kG~~A~~~F~~~L~ 71 (82)
T cd08330 13 RVTNVDPILDKLHGKK-V---ITQEQYSEVR---A----------EKTNQEKMRKLFSFVRSWGASCKDIFYQILR 71 (82)
T ss_pred HHhhHHHHHHHHHHCC-C---CCHHHHHHHH---c----------CCCcHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4556788888888887 4 3444444332 2 3466889999999998888888888888874
No 498
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.23 E-value=91 Score=23.29 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=19.5
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQL 124 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 124 (490)
++..+...+.+-.|.++++.+.+.+..++..|.-..++.+...
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~ 48 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEA 48 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Confidence 3444444444555555555555544334444433333333333
No 499
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=33.84 E-value=1.5e+02 Score=20.93 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcC
Q 042265 130 AQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAG 191 (490)
Q Consensus 130 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (490)
+..+++.+.+.| ..+..-+..+ -.+....++|..+++.+..++..+|....+++...|
T Consensus 16 v~~ild~L~~~g-vlt~~~~e~I---~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 16 TSYIMDHMISDG-VLTLDEEEKV---KSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHH---HcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 444566666655 2222222211 223444555666666655555555555555554433
No 500
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.71 E-value=1.8e+02 Score=20.80 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=12.0
Q ss_pred HhhccCcHHHHHHHHHHhHH
Q 042265 353 GCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~ 372 (490)
.....|++++|...+++..+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34455666666666666554
Done!