Query 042265
Match_columns 490
No_of_seqs 638 out of 3345
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 07:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.2E-39 7.5E-44 325.2 35.2 427 33-476 82-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.1E-38 7.3E-43 318.1 29.5 410 57-476 65-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.8E-29 9.5E-34 237.8 38.6 373 82-461 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1E-27 3.5E-32 227.0 38.8 353 117-475 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.9E-28 6.5E-33 236.2 20.9 184 209-393 27-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.7E-28 1.3E-32 234.1 20.3 188 77-291 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 3.2E-25 1.1E-29 218.0 31.5 393 76-476 6-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.4E-25 8.3E-30 218.8 26.6 401 36-452 7-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 9.3E-24 3.2E-28 203.9 32.6 346 73-445 23-414 (450)
10 3fp2_A TPR repeat-containing p 99.9 3.5E-24 1.2E-28 211.8 30.1 392 75-476 24-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 5.1E-23 1.8E-27 198.7 32.1 320 145-471 25-405 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.4E-22 8.3E-27 198.6 28.5 397 34-450 24-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 4.9E-20 1.7E-24 171.9 31.3 205 250-458 127-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.1E-19 3.6E-24 169.6 31.1 298 146-476 3-336 (359)
15 2xm6_A Protein corresponding t 99.9 7.1E-19 2.4E-23 171.4 37.0 367 73-458 36-452 (490)
16 3hym_B Cell division cycle pro 99.9 1.9E-19 6.6E-24 165.9 27.9 244 216-462 64-321 (330)
17 2xm6_A Protein corresponding t 99.9 3.2E-18 1.1E-22 166.8 37.9 362 94-476 25-433 (490)
18 1fch_A Peroxisomal targeting s 99.9 5.2E-20 1.8E-24 172.6 23.1 260 208-471 64-355 (368)
19 3hym_B Cell division cycle pro 99.9 3.4E-19 1.2E-23 164.2 27.4 265 206-475 20-299 (330)
20 2ooe_A Cleavage stimulation fa 99.8 6.2E-18 2.1E-22 166.5 36.4 394 73-475 10-492 (530)
21 1xi4_A Clathrin heavy chain; a 99.8 4.4E-17 1.5E-21 166.7 39.2 393 18-467 969-1376(1630)
22 4eqf_A PEX5-related protein; a 99.8 2E-19 6.9E-24 168.4 19.1 261 207-471 64-352 (365)
23 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.4E-23 160.1 22.8 236 57-321 15-253 (449)
24 2ooe_A Cleavage stimulation fa 99.8 2E-17 6.7E-22 162.9 32.4 404 20-444 2-495 (530)
25 1b89_A Protein (clathrin heavy 99.8 6.4E-18 2.2E-22 155.6 26.0 379 4-436 10-412 (449)
26 3mkr_A Coatomer subunit epsilo 99.8 1.7E-17 5.8E-22 149.4 26.5 271 185-469 7-288 (291)
27 1xi4_A Clathrin heavy chain; a 99.8 8.1E-16 2.8E-20 157.6 40.9 353 75-470 984-1340(1630)
28 3cv0_A Peroxisome targeting si 99.8 1.4E-18 4.6E-23 159.9 18.5 261 208-473 21-313 (327)
29 1fch_A Peroxisomal targeting s 99.8 3.5E-18 1.2E-22 160.1 21.6 307 59-404 15-354 (368)
30 4g1t_A Interferon-induced prot 99.8 8.7E-17 3E-21 156.0 28.8 378 75-477 50-461 (472)
31 4eqf_A PEX5-related protein; a 99.8 6.5E-18 2.2E-22 158.1 16.9 274 74-371 63-354 (365)
32 3mkr_A Coatomer subunit epsilo 99.8 1.9E-17 6.6E-22 149.0 19.1 246 215-475 6-264 (291)
33 4g1t_A Interferon-induced prot 99.8 3.5E-16 1.2E-20 151.8 27.2 367 57-453 63-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 1.6E-16 5.3E-21 146.1 20.8 240 75-336 20-267 (327)
35 3uq3_A Heat shock protein STI1 99.7 1.2E-15 4E-20 135.1 20.7 227 209-475 6-236 (258)
36 3uq3_A Heat shock protein STI1 99.7 6.2E-16 2.1E-20 136.8 18.5 235 177-454 5-255 (258)
37 2pl2_A Hypothetical conserved 99.7 6.3E-16 2.1E-20 133.0 17.9 195 275-473 2-212 (217)
38 3e4b_A ALGK; tetratricopeptide 99.7 3.7E-16 1.3E-20 150.0 18.0 373 82-473 9-419 (452)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.3E-15 8E-20 134.6 21.3 241 220-469 17-269 (275)
40 3e4b_A ALGK; tetratricopeptide 99.7 2.9E-15 9.8E-20 143.8 21.9 344 116-477 8-389 (452)
41 3u4t_A TPR repeat-containing p 99.7 3.7E-15 1.3E-19 133.1 18.5 254 179-460 5-269 (272)
42 3spa_A Mtrpol, DNA-directed RN 99.7 9.3E-17 3.2E-21 159.6 8.1 147 177-323 127-286 (1134)
43 3spa_A Mtrpol, DNA-directed RN 99.7 2.2E-17 7.5E-22 164.0 3.6 125 33-167 125-257 (1134)
44 1ouv_A Conserved hypothetical 99.6 6.6E-14 2.3E-18 125.1 24.3 224 207-443 5-253 (273)
45 2h6f_A Protein farnesyltransfe 99.6 1.4E-14 4.7E-19 134.8 20.2 246 208-458 97-365 (382)
46 2pl2_A Hypothetical conserved 99.6 2E-14 7E-19 123.5 19.1 194 207-406 4-211 (217)
47 1ouv_A Conserved hypothetical 99.6 7.8E-14 2.7E-18 124.6 23.5 223 242-476 5-252 (273)
48 2ho1_A Type 4 fimbrial biogene 99.6 9.1E-14 3.1E-18 122.5 21.4 206 208-448 37-245 (252)
49 3u4t_A TPR repeat-containing p 99.6 7.5E-14 2.6E-18 124.5 20.1 224 249-476 9-251 (272)
50 4a1s_A PINS, partner of inscut 99.6 7.3E-15 2.5E-19 139.7 14.2 260 214-474 54-371 (411)
51 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-14 4.2E-19 127.2 14.3 213 208-456 23-237 (243)
52 2vq2_A PILW, putative fimbrial 99.6 3.9E-13 1.4E-17 115.9 22.2 134 311-446 78-216 (225)
53 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-13 8.6E-18 119.6 21.1 195 76-273 37-239 (252)
54 3sf4_A G-protein-signaling mod 99.6 2.4E-14 8.2E-19 135.7 15.2 267 179-445 11-340 (406)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.7E-14 1.3E-18 126.7 15.4 241 90-367 19-269 (275)
56 2h6f_A Protein farnesyltransfe 99.6 6.7E-14 2.3E-18 130.2 17.5 228 243-475 97-348 (382)
57 3ro2_A PINS homolog, G-protein 99.6 3.3E-14 1.1E-18 130.8 15.0 263 212-475 9-332 (338)
58 4e6h_A MRNA 3'-END-processing 99.6 5.2E-12 1.8E-16 125.3 31.4 416 19-453 54-581 (679)
59 2q7f_A YRRB protein; TPR, prot 99.6 3E-14 1E-18 124.7 13.9 197 277-476 22-223 (243)
60 3vtx_A MAMA; tetratricopeptide 99.6 1.9E-13 6.4E-18 114.2 17.6 165 308-475 4-170 (184)
61 2vq2_A PILW, putative fimbrial 99.6 2.5E-13 8.5E-18 117.2 18.9 196 278-475 8-211 (225)
62 4abn_A Tetratricopeptide repea 99.5 1.3E-13 4.3E-18 133.2 15.5 212 224-472 84-318 (474)
63 3sf4_A G-protein-signaling mod 99.5 2.3E-13 7.8E-18 128.9 15.5 94 77-172 10-113 (406)
64 4a1s_A PINS, partner of inscut 99.5 1.4E-13 4.9E-18 130.7 12.2 267 147-444 49-375 (411)
65 3ulq_A Response regulator aspa 99.5 8.9E-13 3E-17 124.0 17.1 227 214-440 109-367 (383)
66 4e6h_A MRNA 3'-END-processing 99.5 3.6E-11 1.2E-15 119.4 28.3 401 73-476 63-571 (679)
67 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5.1E-16 111.7 23.7 219 225-447 33-276 (308)
68 3nf1_A KLC 1, kinesin light ch 99.5 1.9E-13 6.5E-18 124.4 10.2 165 208-372 27-223 (311)
69 3ro2_A PINS homolog, G-protein 99.5 2.1E-12 7.1E-17 118.7 17.1 275 116-444 10-335 (338)
70 3vtx_A MAMA; tetratricopeptide 99.4 1.9E-12 6.6E-17 107.9 14.7 167 277-446 4-175 (184)
71 1hz4_A MALT regulatory protein 99.4 1.1E-10 3.8E-15 109.1 27.8 161 313-473 139-320 (373)
72 4gyw_A UDP-N-acetylglucosamine 99.4 2.4E-12 8.3E-17 129.2 16.5 163 309-474 9-173 (723)
73 2ond_A Cleavage stimulation fa 99.4 3.2E-11 1.1E-15 109.6 22.4 212 260-476 33-271 (308)
74 3q15_A PSP28, response regulat 99.4 3.5E-11 1.2E-15 112.8 23.2 227 213-440 106-364 (378)
75 3ulq_A Response regulator aspa 99.4 6.9E-12 2.3E-16 117.9 17.4 230 117-373 109-368 (383)
76 4abn_A Tetratricopeptide repea 99.4 8.2E-12 2.8E-16 120.5 18.0 210 92-304 84-318 (474)
77 3as5_A MAMA; tetratricopeptide 99.4 1.6E-11 5.4E-16 102.1 16.5 159 280-475 10-173 (186)
78 3nf1_A KLC 1, kinesin light ch 99.4 2E-12 6.8E-17 117.5 11.1 254 145-444 26-310 (311)
79 4i17_A Hypothetical protein; T 99.3 2.7E-11 9.4E-16 104.7 15.8 190 277-476 6-210 (228)
80 4i17_A Hypothetical protein; T 99.3 8E-11 2.8E-15 101.8 18.1 206 241-456 5-224 (228)
81 3q15_A PSP28, response regulat 99.3 2.7E-11 9.1E-16 113.6 15.9 303 33-372 8-364 (378)
82 3as5_A MAMA; tetratricopeptide 99.3 7.6E-11 2.6E-15 97.9 16.7 168 243-446 8-178 (186)
83 1hz4_A MALT regulatory protein 99.3 2.4E-09 8.2E-14 100.0 28.2 267 81-372 19-321 (373)
84 3edt_B KLC 2, kinesin light ch 99.2 1.3E-10 4.6E-15 103.7 14.0 198 278-475 43-281 (283)
85 1qqe_A Vesicular transport pro 99.2 2.4E-10 8.1E-15 102.9 13.9 162 311-472 79-266 (292)
86 4gyw_A UDP-N-acetylglucosamine 99.2 3.4E-10 1.2E-14 113.8 15.9 162 208-372 9-173 (723)
87 3edt_B KLC 2, kinesin light ch 99.2 6.1E-10 2.1E-14 99.3 16.2 197 245-441 45-281 (283)
88 3mv2_B Coatomer subunit epsilo 99.2 2.9E-09 1E-13 94.0 19.5 238 189-448 25-289 (310)
89 1qqe_A Vesicular transport pro 99.2 6.3E-10 2.2E-14 100.1 15.4 218 192-446 32-274 (292)
90 2yhc_A BAMD, UPF0169 lipoprote 99.1 2E-09 7E-14 92.6 17.2 184 278-478 4-216 (225)
91 2fo7_A Synthetic consensus TPR 99.1 1.1E-09 3.8E-14 85.4 14.2 126 348-475 5-132 (136)
92 3rjv_A Putative SEL1 repeat pr 99.1 3.9E-09 1.3E-13 89.9 17.7 162 307-477 16-199 (212)
93 3qky_A Outer membrane assembly 99.1 6.1E-10 2.1E-14 98.4 13.0 181 281-463 18-249 (261)
94 2pzi_A Probable serine/threoni 99.1 2E-10 6.9E-15 115.9 10.7 145 310-458 434-580 (681)
95 3mv2_B Coatomer subunit epsilo 99.1 8.9E-09 3.1E-13 90.9 19.4 240 215-476 20-283 (310)
96 4ga2_A E3 SUMO-protein ligase 99.1 7.3E-11 2.5E-15 94.5 5.3 140 318-461 6-149 (150)
97 2uy1_A Cleavage stimulation fa 99.1 7.8E-08 2.7E-12 92.7 27.2 370 33-440 13-412 (493)
98 3qky_A Outer membrane assembly 99.1 1.4E-09 4.8E-14 96.0 13.9 169 307-476 13-225 (261)
99 3qou_A Protein YBBN; thioredox 99.1 1.8E-09 6.3E-14 96.7 14.3 175 295-473 103-282 (287)
100 2fo7_A Synthetic consensus TPR 99.1 3.9E-09 1.3E-13 82.2 14.0 131 311-444 3-135 (136)
101 4ga2_A E3 SUMO-protein ligase 99.0 3.9E-10 1.3E-14 90.2 6.6 124 350-475 3-129 (150)
102 2vsy_A XCC0866; transferase, g 99.0 3.4E-09 1.2E-13 105.0 14.2 160 291-453 2-169 (568)
103 2r5s_A Uncharacterized protein 99.0 2.2E-09 7.4E-14 88.5 10.2 155 315-473 12-171 (176)
104 2ifu_A Gamma-SNAP; membrane fu 99.0 7.6E-09 2.6E-13 93.7 14.2 218 221-467 4-253 (307)
105 3urz_A Uncharacterized protein 99.0 9.1E-09 3.1E-13 87.3 13.7 182 245-445 6-190 (208)
106 2pzi_A Probable serine/threoni 99.0 1.4E-08 4.9E-13 102.4 17.3 168 254-426 402-582 (681)
107 3gyz_A Chaperone protein IPGC; 99.0 8.1E-10 2.8E-14 88.0 6.1 98 379-476 35-134 (151)
108 3u3w_A Transcriptional activat 98.9 9.9E-08 3.4E-12 85.7 20.3 159 315-473 81-264 (293)
109 3dra_A Protein farnesyltransfe 98.9 6.7E-07 2.3E-11 79.8 24.5 230 219-454 43-301 (306)
110 4gco_A Protein STI-1; structur 98.9 1.5E-08 5.2E-13 78.0 11.9 108 346-455 15-124 (126)
111 2vsy_A XCC0866; transferase, g 98.9 1.4E-08 4.9E-13 100.5 14.6 148 256-407 2-155 (568)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 9.2E-09 3.1E-13 93.2 12.0 196 255-473 3-222 (307)
113 3rjv_A Putative SEL1 repeat pr 98.9 7.7E-08 2.7E-12 81.7 16.3 171 94-273 4-198 (212)
114 2vgx_A Chaperone SYCD; alterna 98.9 3.1E-09 1.1E-13 84.6 6.9 98 347-446 24-123 (148)
115 3qou_A Protein YBBN; thioredox 98.9 8.5E-08 2.9E-12 85.8 16.9 164 240-405 114-280 (287)
116 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.8E-08 1.6E-12 84.0 14.8 184 242-446 3-218 (225)
117 2uy1_A Cleavage stimulation fa 98.9 1.2E-07 3.9E-12 91.5 18.7 374 57-474 6-412 (493)
118 3urz_A Uncharacterized protein 98.9 4.3E-08 1.5E-12 83.1 14.1 22 215-236 11-32 (208)
119 3dra_A Protein farnesyltransfe 98.9 2.5E-07 8.6E-12 82.5 19.3 214 257-474 47-286 (306)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.9 5.9E-08 2E-12 82.5 14.7 130 311-446 8-155 (213)
121 1a17_A Serine/threonine protei 98.8 4.8E-08 1.6E-12 79.2 13.3 127 345-473 14-144 (166)
122 2r5s_A Uncharacterized protein 98.8 2.5E-08 8.4E-13 82.1 11.5 152 37-201 8-168 (176)
123 2qfc_A PLCR protein; TPR, HTH, 98.8 6.6E-08 2.3E-12 86.8 15.0 162 312-473 78-264 (293)
124 4gco_A Protein STI-1; structur 98.8 2.1E-08 7.1E-13 77.3 9.6 96 380-475 13-110 (126)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 9.4E-08 3.2E-12 81.2 14.4 145 280-438 8-169 (213)
126 2lni_A Stress-induced-phosphop 98.8 4.7E-08 1.6E-12 75.8 10.9 116 344-461 16-133 (133)
127 1na0_A Designed protein CTPR3; 98.8 6.8E-08 2.3E-12 73.9 11.5 115 344-460 9-125 (125)
128 2c2l_A CHIP, carboxy terminus 98.8 1.6E-08 5.3E-13 90.3 8.9 51 425-475 148-199 (281)
129 2vyi_A SGTA protein; chaperone 98.8 5.2E-08 1.8E-12 75.2 10.6 117 344-462 12-130 (131)
130 2xcb_A PCRH, regulatory protei 98.8 2.2E-08 7.6E-13 79.0 8.1 89 385-473 23-113 (142)
131 2e2e_A Formate-dependent nitri 98.7 1.9E-08 6.5E-13 82.8 7.5 126 319-447 20-150 (177)
132 1p5q_A FKBP52, FK506-binding p 98.7 9.7E-08 3.3E-12 87.5 12.6 126 346-473 149-292 (336)
133 3upv_A Heat shock protein STI1 98.7 1.2E-07 4.1E-12 73.0 10.2 90 384-473 8-99 (126)
134 2kck_A TPR repeat; tetratricop 98.7 9.6E-08 3.3E-12 71.4 9.4 99 379-477 5-108 (112)
135 3u3w_A Transcriptional activat 98.7 7.2E-07 2.5E-11 80.0 16.6 212 18-271 32-265 (293)
136 4f3v_A ESX-1 secretion system 98.7 8.6E-08 2.9E-12 83.5 9.8 192 255-452 18-247 (282)
137 2qfc_A PLCR protein; TPR, HTH, 98.7 9.7E-07 3.3E-11 79.1 17.1 170 77-271 76-265 (293)
138 2fbn_A 70 kDa peptidylprolyl i 98.6 2.9E-07 9.8E-12 77.2 11.8 96 381-476 89-187 (198)
139 1hxi_A PEX5, peroxisome target 98.6 9.4E-08 3.2E-12 72.9 8.0 95 382-476 19-115 (121)
140 3q7a_A Farnesyltransferase alp 98.6 2.5E-05 8.5E-10 70.5 24.5 231 217-452 63-343 (349)
141 2vgx_A Chaperone SYCD; alterna 98.6 8.2E-08 2.8E-12 76.3 7.3 98 378-475 19-118 (148)
142 3q49_B STIP1 homology and U bo 98.6 2.5E-07 8.4E-12 72.3 10.0 100 343-444 8-109 (137)
143 1elw_A TPR1-domain of HOP; HOP 98.6 3.9E-07 1.3E-11 68.7 10.8 108 346-455 6-115 (118)
144 4f3v_A ESX-1 secretion system 98.6 2.3E-07 7.7E-12 80.9 10.4 182 290-476 18-238 (282)
145 3sz7_A HSC70 cochaperone (SGT) 98.6 1.5E-07 5.1E-12 76.3 8.8 110 343-454 10-121 (164)
146 4gcn_A Protein STI-1; structur 98.6 1.3E-07 4.5E-12 72.9 7.8 92 383-474 11-111 (127)
147 2lni_A Stress-induced-phosphop 98.6 3.4E-07 1.2E-11 70.8 10.2 99 377-475 13-113 (133)
148 3gw4_A Uncharacterized protein 98.6 4.2E-07 1.4E-11 76.4 11.4 83 290-372 4-94 (203)
149 3upv_A Heat shock protein STI1 98.6 5.1E-07 1.8E-11 69.3 11.0 111 345-457 5-123 (126)
150 2e2e_A Formate-dependent nitri 98.6 3.1E-07 1.1E-11 75.4 10.1 121 354-476 20-145 (177)
151 3sz7_A HSC70 cochaperone (SGT) 98.6 4.6E-07 1.6E-11 73.4 10.9 92 382-473 13-106 (164)
152 2xcb_A PCRH, regulatory protei 98.6 2.5E-07 8.4E-12 73.0 8.8 107 345-453 19-127 (142)
153 2c2l_A CHIP, carboxy terminus 98.6 1.6E-07 5.4E-12 83.7 8.5 97 75-173 3-99 (281)
154 3gyz_A Chaperone protein IPGC; 98.5 5.3E-07 1.8E-11 71.6 10.3 100 345-446 37-138 (151)
155 1elw_A TPR1-domain of HOP; HOP 98.5 1.1E-06 3.7E-11 66.2 11.1 97 380-476 4-102 (118)
156 3gw4_A Uncharacterized protein 98.5 5E-07 1.7E-11 75.9 10.0 64 208-271 26-94 (203)
157 1na0_A Designed protein CTPR3; 98.5 6.8E-07 2.3E-11 68.1 9.6 97 380-476 9-107 (125)
158 3q7a_A Farnesyltransferase alp 98.5 9.4E-05 3.2E-09 66.7 24.4 174 87-293 65-257 (349)
159 3q49_B STIP1 homology and U bo 98.5 1.2E-06 4E-11 68.4 10.8 99 377-475 6-106 (137)
160 3k9i_A BH0479 protein; putativ 98.5 1.5E-07 5E-12 71.4 5.2 89 357-446 3-95 (117)
161 2dba_A Smooth muscle cell asso 98.5 1.9E-06 6.4E-11 68.0 11.9 110 343-455 27-142 (148)
162 1a17_A Serine/threonine protei 98.5 2.2E-06 7.6E-11 69.1 12.4 127 311-440 15-145 (166)
163 2dba_A Smooth muscle cell asso 98.5 1.5E-06 5.3E-11 68.5 11.2 98 378-475 26-128 (148)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.3E-06 4.3E-11 83.7 12.4 95 380-474 317-414 (457)
165 1wao_1 Serine/threonine protei 98.4 4E-07 1.4E-11 87.6 8.2 118 352-471 14-135 (477)
166 2vyi_A SGTA protein; chaperone 98.4 1.3E-06 4.4E-11 67.2 9.5 98 379-476 11-110 (131)
167 2hr2_A Hypothetical protein; a 98.4 1.2E-06 4.2E-11 68.8 8.7 107 345-474 12-130 (159)
168 4b4t_Q 26S proteasome regulato 98.4 9.2E-06 3.2E-10 77.2 16.5 161 313-473 59-243 (434)
169 3rkv_A Putative peptidylprolyl 98.4 9E-07 3.1E-11 71.4 7.9 103 344-446 11-131 (162)
170 1elr_A TPR2A-domain of HOP; HO 98.4 1.6E-06 5.5E-11 66.7 8.9 109 346-457 6-123 (131)
171 3dss_A Geranylgeranyl transfer 98.3 7.2E-05 2.5E-09 67.1 20.3 228 220-453 41-316 (331)
172 2xev_A YBGF; tetratricopeptide 98.3 1.7E-06 5.8E-11 66.6 8.5 99 349-449 7-113 (129)
173 1p5q_A FKBP52, FK506-binding p 98.3 5E-06 1.7E-10 76.0 12.3 129 310-440 148-293 (336)
174 1hxi_A PEX5, peroxisome target 98.3 1.5E-06 5.2E-11 66.1 7.4 97 348-446 21-119 (121)
175 2fbn_A 70 kDa peptidylprolyl i 98.3 1.3E-06 4.3E-11 73.2 7.6 138 57-196 16-175 (198)
176 2xev_A YBGF; tetratricopeptide 98.3 6.6E-06 2.3E-10 63.1 11.1 91 385-475 7-105 (129)
177 1ihg_A Cyclophilin 40; ppiase 98.3 3E-06 1E-10 78.5 10.4 90 379-468 272-363 (370)
178 1elr_A TPR2A-domain of HOP; HO 98.3 1.9E-06 6.4E-11 66.3 7.8 97 380-476 4-109 (131)
179 3dss_A Geranylgeranyl transfer 98.3 0.00014 4.7E-09 65.3 20.8 217 255-475 41-304 (331)
180 2kck_A TPR repeat; tetratricop 98.3 5.4E-06 1.8E-10 61.6 10.1 100 74-175 4-106 (112)
181 3ro3_A PINS homolog, G-protein 98.3 6.4E-06 2.2E-10 65.9 10.6 127 348-474 13-157 (164)
182 3rkv_A Putative peptidylprolyl 98.3 2.4E-06 8.4E-11 68.8 7.9 92 384-475 15-126 (162)
183 2if4_A ATFKBP42; FKBP-like, al 98.3 1.8E-06 6E-11 79.1 7.8 147 310-476 180-329 (338)
184 4gcn_A Protein STI-1; structur 98.3 4.6E-06 1.6E-10 64.0 9.0 96 347-444 11-115 (127)
185 4b4t_Q 26S proteasome regulato 98.2 0.00024 8.3E-09 67.3 23.0 162 211-372 58-244 (434)
186 1dce_A Protein (RAB geranylger 98.2 4.2E-05 1.4E-09 74.9 17.3 167 295-464 46-244 (567)
187 3k9i_A BH0479 protein; putativ 98.2 6.4E-07 2.2E-11 67.8 2.8 84 392-475 2-90 (117)
188 3ma5_A Tetratricopeptide repea 98.2 1E-05 3.4E-10 59.1 9.0 64 411-474 6-69 (100)
189 3n71_A Histone lysine methyltr 98.2 1.2E-05 4E-10 76.9 11.4 124 353-476 318-465 (490)
190 3ro3_A PINS homolog, G-protein 98.1 9.3E-06 3.2E-10 64.9 8.7 131 312-442 12-159 (164)
191 1klx_A Cysteine rich protein B 98.1 2.5E-05 8.6E-10 60.8 10.8 112 358-477 9-128 (138)
192 2l6j_A TPR repeat-containing p 98.1 6.1E-07 2.1E-11 67.0 1.3 93 379-471 3-103 (111)
193 2hr2_A Hypothetical protein; a 98.1 5.4E-06 1.9E-10 65.1 6.5 116 311-455 13-145 (159)
194 2if4_A ATFKBP42; FKBP-like, al 98.1 9.5E-06 3.2E-10 74.2 8.6 152 278-446 179-333 (338)
195 2kat_A Uncharacterized protein 98.0 2.2E-05 7.7E-10 58.8 8.6 79 363-443 4-84 (115)
196 1wao_1 Serine/threonine protei 98.0 8.8E-06 3E-10 78.2 7.6 84 288-372 16-102 (477)
197 1na3_A Designed protein CTPR2; 98.0 1.3E-05 4.5E-10 57.0 6.7 81 380-460 9-91 (91)
198 1ihg_A Cyclophilin 40; ppiase 98.0 1.5E-05 5E-10 73.8 8.5 113 344-475 223-336 (370)
199 1zu2_A Mitochondrial import re 98.0 3.8E-06 1.3E-10 65.8 3.4 85 392-476 14-121 (158)
200 3lvg_A Clathrin heavy chain 1; 98.0 1E-07 3.5E-12 87.1 -6.5 251 60-330 40-325 (624)
201 3bee_A Putative YFRE protein; 97.9 5.8E-05 2E-09 53.8 8.7 71 411-482 5-78 (93)
202 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00011 3.9E-09 70.1 12.7 121 208-329 268-405 (457)
203 1klx_A Cysteine rich protein B 97.8 0.00027 9.1E-09 54.9 12.1 112 323-443 9-128 (138)
204 2l6j_A TPR repeat-containing p 97.8 8.6E-05 2.9E-09 54.9 8.3 66 411-476 3-68 (111)
205 3n71_A Histone lysine methyltr 97.8 0.00016 5.3E-09 69.2 11.3 127 218-373 319-464 (490)
206 1zu2_A Mitochondrial import re 97.7 3.2E-05 1.1E-09 60.7 5.2 109 358-475 16-147 (158)
207 1na3_A Designed protein CTPR2; 97.7 0.00012 4.2E-09 51.8 7.8 65 411-475 8-72 (91)
208 1dce_A Protein (RAB geranylger 97.7 0.0004 1.4E-08 67.9 13.8 150 323-475 43-221 (567)
209 2kat_A Uncharacterized protein 97.7 9.9E-05 3.4E-09 55.2 6.9 76 399-474 4-81 (115)
210 3qww_A SET and MYND domain-con 97.5 0.00034 1.1E-08 65.7 8.8 82 393-474 311-410 (433)
211 2kc7_A BFR218_protein; tetratr 97.4 0.00016 5.5E-09 52.2 4.9 79 386-472 6-87 (99)
212 3qwp_A SET and MYND domain-con 97.4 0.00047 1.6E-08 64.8 9.2 86 388-473 295-398 (429)
213 2kc7_A BFR218_protein; tetratr 97.4 0.00043 1.5E-08 49.9 7.0 59 418-476 6-65 (99)
214 3lvg_A Clathrin heavy chain 1; 97.2 0.00045 1.6E-08 63.6 6.2 144 33-197 52-219 (624)
215 3qww_A SET and MYND domain-con 97.2 0.0012 4E-08 62.0 9.1 93 356-448 310-423 (433)
216 3mkq_A Coatomer beta'-subunit; 97.2 0.037 1.3E-06 56.9 21.2 165 121-334 609-774 (814)
217 3ma5_A Tetratricopeptide repea 97.1 0.0014 4.8E-08 47.3 7.0 61 311-372 9-69 (100)
218 3qwp_A SET and MYND domain-con 97.1 0.004 1.4E-07 58.5 11.4 100 351-450 294-414 (429)
219 3ly7_A Transcriptional activat 97.0 0.0053 1.8E-07 55.4 11.3 64 411-475 276-339 (372)
220 3ly7_A Transcriptional activat 96.9 0.02 6.9E-07 51.6 14.0 75 375-450 272-347 (372)
221 3u64_A Protein TP_0956; tetrat 96.8 0.0042 1.4E-07 53.7 8.1 87 397-483 180-277 (301)
222 1qsa_A Protein (soluble lytic 96.8 0.46 1.6E-05 46.6 26.3 114 323-440 228-347 (618)
223 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0049 1.7E-07 44.8 7.4 70 384-453 9-87 (104)
224 1pc2_A Mitochondria fission pr 96.8 0.0048 1.6E-07 47.7 7.5 90 359-450 13-109 (152)
225 3mkq_A Coatomer beta'-subunit; 96.6 0.059 2E-06 55.4 17.2 155 216-406 607-762 (814)
226 1wy6_A Hypothetical protein ST 96.6 0.15 5E-06 38.1 15.1 141 319-478 17-157 (172)
227 1pc2_A Mitochondria fission pr 96.6 0.0037 1.2E-07 48.4 5.6 80 396-475 14-100 (152)
228 3bee_A Putative YFRE protein; 96.4 0.026 8.9E-07 39.8 9.1 70 377-446 3-77 (93)
229 2v5f_A Prolyl 4-hydroxylase su 96.4 0.014 4.9E-07 42.3 7.7 65 411-475 4-75 (104)
230 3mkq_B Coatomer subunit alpha; 96.2 0.34 1.2E-05 38.4 16.0 98 189-303 17-114 (177)
231 1nzn_A CGI-135 protein, fissio 95.9 0.094 3.2E-06 38.9 10.0 91 358-450 15-112 (126)
232 1wy6_A Hypothetical protein ST 95.9 0.38 1.3E-05 35.9 12.9 147 113-274 7-156 (172)
233 4gns_B Protein CSD3, chitin bi 95.4 0.064 2.2E-06 53.5 10.0 55 418-472 343-397 (754)
234 3mkq_B Coatomer subunit alpha; 95.1 0.96 3.3E-05 35.9 17.0 44 290-335 17-60 (177)
235 4ady_A RPN2, 26S proteasome re 94.7 4.4 0.00015 41.5 21.1 25 149-173 233-257 (963)
236 2ff4_A Probable regulatory pro 94.7 0.067 2.3E-06 49.4 7.3 70 414-483 173-247 (388)
237 3ltj_A Alpharep-4; protein eng 94.5 1.6 5.4E-05 35.6 18.0 158 57-222 9-166 (201)
238 1nzn_A CGI-135 protein, fissio 94.3 0.08 2.7E-06 39.3 5.4 67 409-475 32-103 (126)
239 4b4t_P 26S proteasome regulato 94.0 0.65 2.2E-05 43.7 12.5 248 59-308 30-325 (445)
240 4h7y_A Dual specificity protei 93.7 0.46 1.6E-05 36.3 8.6 110 343-454 12-136 (161)
241 3u64_A Protein TP_0956; tetrat 93.4 0.5 1.7E-05 40.9 9.6 65 210-274 201-271 (301)
242 4h7y_A Dual specificity protei 93.4 0.62 2.1E-05 35.6 8.8 101 72-174 9-122 (161)
243 1v54_E Cytochrome C oxidase po 93.0 0.5 1.7E-05 33.1 7.1 64 324-389 25-88 (109)
244 1y8m_A FIS1; mitochondria, unk 92.5 1.6 5.3E-05 33.1 9.9 72 377-448 36-113 (144)
245 3ltm_A Alpha-REP4; protein eng 92.4 3.8 0.00013 33.5 17.8 121 64-192 21-141 (211)
246 4ady_A RPN2, 26S proteasome re 91.9 11 0.00039 38.6 18.3 263 86-354 384-671 (963)
247 3ffl_A Anaphase-promoting comp 91.8 1.1 3.9E-05 34.9 8.7 25 347-371 66-90 (167)
248 3o48_A Mitochondria fission 1 91.7 0.6 2.1E-05 34.8 6.8 70 378-447 38-113 (134)
249 3ffl_A Anaphase-promoting comp 91.4 0.59 2E-05 36.5 6.7 26 447-472 123-148 (167)
250 4fhn_B Nucleoporin NUP120; pro 91.1 6.7 0.00023 41.9 16.9 23 282-304 846-868 (1139)
251 2y69_E Cytochrome C oxidase su 90.4 1.2 4.1E-05 33.1 7.1 64 324-389 68-131 (152)
252 2wpv_A GET4, UPF0363 protein Y 90.4 8.8 0.0003 33.7 20.5 167 181-373 37-217 (312)
253 3txn_A 26S proteasome regulato 90.2 11 0.00037 34.5 18.5 90 213-302 104-205 (394)
254 3ltm_A Alpha-REP4; protein eng 89.8 7.2 0.00025 31.8 18.2 18 144-161 31-48 (211)
255 3lpz_A GET4 (YOR164C homolog); 89.2 11 0.00039 33.3 19.0 144 284-440 41-215 (336)
256 1v54_E Cytochrome C oxidase po 88.9 2.6 8.8E-05 29.6 7.5 61 93-154 27-87 (109)
257 4gns_B Protein CSD3, chitin bi 88.7 3.3 0.00011 41.5 11.3 55 250-305 344-398 (754)
258 1qsa_A Protein (soluble lytic 88.2 21 0.0007 35.0 37.3 341 57-438 84-439 (618)
259 1y8m_A FIS1; mitochondria, unk 88.0 3.5 0.00012 31.2 8.4 68 408-475 35-106 (144)
260 2wpv_A GET4, UPF0363 protein Y 87.6 14 0.00048 32.4 19.3 147 283-440 38-216 (312)
261 2ff4_A Probable regulatory pro 87.4 3.9 0.00013 37.5 10.4 71 211-282 174-249 (388)
262 3o48_A Mitochondria fission 1 86.5 3.1 0.0001 31.0 7.3 67 409-475 37-107 (134)
263 4fhn_B Nucleoporin NUP120; pro 86.3 21 0.00072 38.1 16.7 60 245-304 901-964 (1139)
264 3ltj_A Alpharep-4; protein eng 86.2 12 0.0004 30.2 17.7 9 315-323 158-166 (201)
265 2uwj_G Type III export protein 84.9 7.9 0.00027 27.0 8.9 86 258-348 21-106 (115)
266 3lpz_A GET4 (YOR164C homolog); 84.4 21 0.00073 31.6 23.0 165 182-372 40-215 (336)
267 2p58_C Putative type III secre 84.4 8.5 0.00029 26.9 9.1 85 258-347 22-106 (116)
268 2y69_E Cytochrome C oxidase su 83.9 5.7 0.00019 29.6 7.5 60 94-154 71-130 (152)
269 1zbp_A Hypothetical protein VP 81.4 3.8 0.00013 34.9 6.7 58 389-446 6-65 (273)
270 4b4t_P 26S proteasome regulato 80.2 38 0.0013 31.6 21.8 96 312-407 140-245 (445)
271 1wdy_A 2-5A-dependent ribonucl 78.7 29 0.001 29.4 12.5 47 256-302 192-240 (285)
272 3esl_A Checkpoint serine/threo 78.2 25 0.00084 28.5 10.1 49 394-442 93-145 (202)
273 2uwj_G Type III export protein 77.9 13 0.00043 26.0 7.1 78 12-106 21-98 (115)
274 4b4t_R RPN7, 26S proteasome re 75.1 15 0.00052 34.1 9.6 59 347-405 134-193 (429)
275 4b4t_R RPN7, 26S proteasome re 75.0 22 0.00074 33.1 10.7 95 279-373 132-237 (429)
276 1wdy_A 2-5A-dependent ribonucl 72.2 34 0.0012 28.9 10.9 199 57-265 14-238 (285)
277 2p58_C Putative type III secre 70.2 25 0.00086 24.6 9.8 48 189-238 52-99 (116)
278 1zbp_A Hypothetical protein VP 68.9 54 0.0018 27.9 13.8 121 317-449 5-137 (273)
279 2d2s_A Exocyst complex compone 66.8 18 0.00063 30.2 7.3 89 81-172 23-117 (235)
280 1oyz_A Hypothetical protein YI 65.6 63 0.0021 27.5 19.5 18 144-161 35-52 (280)
281 3eiq_C Programmed cell death p 63.5 73 0.0025 28.5 10.9 29 37-75 56-84 (358)
282 3esl_A Checkpoint serine/threo 63.4 46 0.0016 26.9 8.6 56 90-145 93-149 (202)
283 4a1g_A Mitotic checkpoint seri 62.6 50 0.0017 25.3 9.3 30 411-440 100-129 (152)
284 3txn_A 26S proteasome regulato 61.6 96 0.0033 28.3 24.6 214 248-476 104-344 (394)
285 3mv2_A Coatomer subunit alpha; 61.5 82 0.0028 27.6 10.4 60 402-475 195-256 (325)
286 3bqo_A Telomeric repeat-bindin 58.5 49 0.0017 26.5 7.7 65 396-460 94-165 (211)
287 2qx5_A Nucleoporin NIC96; mRNA 57.9 1E+02 0.0034 30.4 11.7 16 457-472 549-564 (661)
288 2wvi_A Mitotic checkpoint seri 57.8 65 0.0022 25.0 9.1 32 411-442 95-126 (164)
289 4gq2_M Nucleoporin NUP120; bet 56.2 1E+02 0.0035 32.1 12.1 47 414-460 899-950 (950)
290 1te4_A Conserved protein MTH18 56.0 35 0.0012 25.0 6.7 51 109-163 54-104 (131)
291 3ygs_P Procaspase 9; apoptosis 54.1 27 0.00093 24.3 5.3 66 17-97 24-89 (97)
292 2nsz_A Programmed cell death p 52.8 57 0.0019 24.1 7.2 62 282-343 11-77 (129)
293 3kea_A K1L; tropism, ANK repea 50.5 1.2E+02 0.004 25.9 10.7 137 57-202 8-151 (285)
294 4a1g_A Mitotic checkpoint seri 50.2 83 0.0029 24.0 8.8 52 94-145 83-135 (152)
295 2r9g_A AAA ATPase, central reg 49.2 1E+02 0.0035 24.8 9.0 66 314-381 16-89 (204)
296 3kea_A K1L; tropism, ANK repea 49.1 1.2E+02 0.004 25.9 9.9 16 288-303 69-84 (285)
297 2nsz_A Programmed cell death p 47.6 44 0.0015 24.7 5.9 59 182-240 12-75 (129)
298 1k1a_A B-cell lymphoma 3-encod 47.6 1.1E+02 0.0038 24.8 9.6 181 81-267 11-204 (241)
299 1oyz_A Hypothetical protein YI 47.5 1.3E+02 0.0044 25.4 21.4 48 109-160 35-82 (280)
300 2ko4_A Mediator of RNA polymer 46.7 38 0.0013 22.3 4.4 39 65-103 23-63 (81)
301 2ion_A PDCD4, programmed cell 45.9 46 0.0016 25.5 5.8 63 281-343 12-79 (152)
302 2zu6_B Programmed cell death p 45.5 1.5E+02 0.0053 25.8 10.4 195 281-477 6-233 (307)
303 4b4t_S RPN3, 26S proteasome re 45.3 1.2E+02 0.0042 28.7 9.6 24 79-102 234-257 (523)
304 1bpo_A Protein (clathrin); cla 44.2 2E+02 0.0069 26.8 11.7 113 57-171 341-454 (494)
305 3hra_A Ankyrin repeat family p 43.6 1E+02 0.0035 24.2 8.2 14 87-100 13-26 (201)
306 2wvi_A Mitotic checkpoint seri 43.6 1.1E+02 0.0039 23.7 9.1 56 93-148 77-133 (164)
307 3jxi_A Vanilloid receptor-rela 43.5 41 0.0014 28.1 6.0 56 83-138 9-73 (260)
308 4aez_C MAD3, mitotic spindle c 43.2 67 0.0023 26.4 6.6 32 411-442 149-180 (223)
309 4gq2_M Nucleoporin NUP120; bet 43.1 2.6E+02 0.0089 29.1 12.7 51 183-234 816-866 (950)
310 2r9g_A AAA ATPase, central reg 42.3 1.3E+02 0.0046 24.1 8.4 65 209-274 12-84 (204)
311 3ygs_P Procaspase 9; apoptosis 41.6 77 0.0026 21.9 6.0 36 161-196 52-87 (97)
312 3eu9_A Huntingtin-interacting 41.3 1.3E+02 0.0046 24.2 8.9 40 58-98 19-61 (240)
313 2d2s_A Exocyst complex compone 41.1 1E+02 0.0035 25.6 7.7 21 215-235 25-45 (235)
314 2ion_A PDCD4, programmed cell 40.0 38 0.0013 26.0 4.5 24 182-205 14-37 (152)
315 2fu4_A Ferric uptake regulatio 39.8 78 0.0027 20.8 5.9 61 101-162 7-68 (83)
316 3ctd_A Putative ATPase, AAA fa 39.6 1.5E+02 0.0052 24.0 8.4 69 311-380 34-110 (213)
317 1ya0_A SMG-7 transcript varian 39.5 1.1E+02 0.0039 28.9 8.6 52 420-471 160-211 (497)
318 2fe3_A Peroxide operon regulat 38.4 96 0.0033 23.3 6.7 59 234-293 13-71 (145)
319 3bge_A Predicted ATPase; struc 38.2 1.2E+02 0.0042 24.3 7.1 58 315-372 10-75 (201)
320 1wgl_A TOLL-interacting protei 34.8 51 0.0017 20.4 3.6 49 432-482 10-59 (59)
321 2qx5_A Nucleoporin NIC96; mRNA 34.8 3.4E+02 0.012 26.7 15.4 20 391-410 549-568 (661)
322 2fe3_A Peroxide operon regulat 34.3 70 0.0024 24.1 5.3 62 101-163 12-73 (145)
323 3bge_A Predicted ATPase; struc 34.2 1.6E+02 0.0055 23.6 7.2 46 212-257 8-56 (201)
324 2f6m_A Suppressor protein STP2 33.2 59 0.002 20.6 3.7 46 114-160 5-50 (65)
325 3ctd_A Putative ATPase, AAA fa 32.9 2E+02 0.0068 23.4 7.8 68 207-274 31-106 (213)
326 3mkr_B Coatomer subunit alpha; 32.0 2.4E+02 0.0081 24.7 8.6 43 402-444 186-230 (320)
327 1n11_A Ankyrin; clathrin, BAND 31.3 3E+02 0.01 25.0 11.7 345 116-480 16-371 (437)
328 3eu9_A Huntingtin-interacting 31.3 2E+02 0.007 23.0 9.4 79 57-144 51-135 (240)
329 4g8k_A 2-5A-dependent ribonucl 29.5 2.8E+02 0.0095 24.0 11.2 282 39-343 27-328 (337)
330 4b4t_S RPN3, 26S proteasome re 29.2 97 0.0033 29.4 6.2 63 411-475 230-299 (523)
331 2b7e_A PRE-mRNA processing pro 29.1 49 0.0017 20.5 2.8 29 93-121 3-31 (59)
332 2xig_A Ferric uptake regulatio 29.0 1.4E+02 0.0049 22.5 6.3 61 233-294 17-77 (150)
333 4aez_C MAD3, mitotic spindle c 27.9 2.5E+02 0.0086 23.0 8.5 54 93-146 131-185 (223)
334 2w57_A Ferric uptake regulatio 27.5 1.7E+02 0.0057 22.2 6.4 62 100-162 6-68 (150)
335 2ijq_A Hypothetical protein; s 27.4 1.5E+02 0.0051 22.9 6.0 60 79-139 36-103 (161)
336 3jxi_A Vanilloid receptor-rela 26.9 64 0.0022 26.9 4.4 83 120-203 11-116 (260)
337 3ljn_A Hypothetical protein; a 25.8 2.6E+02 0.009 24.5 8.6 17 287-303 179-195 (364)
338 1wfd_A Hypothetical protein 15 25.7 67 0.0023 22.1 3.4 42 50-103 1-42 (93)
339 4ets_A Ferric uptake regulatio 25.5 1.2E+02 0.004 23.4 5.2 69 225-294 14-85 (162)
340 3eyy_A Putative iron uptake re 25.3 1.6E+02 0.0056 22.0 6.0 58 234-293 10-67 (145)
341 2o03_A Probable zinc uptake re 25.1 98 0.0034 22.7 4.6 25 82-106 16-40 (131)
342 2xig_A Ferric uptake regulatio 24.9 1.1E+02 0.0038 23.2 5.0 63 100-163 16-78 (150)
343 3us6_A Histidine-containing ph 24.7 2.3E+02 0.0079 21.5 7.0 42 347-392 10-51 (153)
344 2p1h_A APAF-1, apoptotic prote 24.4 1.7E+02 0.0058 19.8 7.7 64 130-197 24-87 (94)
345 3b34_A Aminopeptidase N; prote 24.2 4.6E+02 0.016 27.0 10.6 89 378-467 762-862 (891)
346 3eiq_C Programmed cell death p 23.6 4E+02 0.014 23.8 16.3 65 281-345 220-289 (358)
347 2crb_A Nuclear receptor bindin 23.2 1.1E+02 0.0037 21.0 3.8 24 414-437 17-40 (97)
348 4ets_A Ferric uptake regulatio 23.1 1.6E+02 0.0054 22.7 5.5 69 93-162 14-85 (162)
349 3mwm_A ZUR, putative metal upt 23.0 93 0.0032 23.2 4.1 45 117-161 19-63 (139)
350 3ljn_A Hypothetical protein; a 22.1 3.1E+02 0.011 24.1 8.3 81 389-471 179-266 (364)
351 1mzb_A Ferric uptake regulatio 22.0 1.8E+02 0.006 21.5 5.5 66 59-125 1-67 (136)
352 3qye_A TBC1 domain family memb 21.9 4E+02 0.014 23.2 10.3 130 91-224 164-310 (331)
353 1ug3_A EIF4GI, eukaryotic prot 21.7 4.1E+02 0.014 23.4 12.2 25 151-175 16-40 (339)
354 2fu4_A Ferric uptake regulatio 21.7 1.7E+02 0.0059 19.0 6.6 60 233-293 7-67 (83)
355 3eyy_A Putative iron uptake re 21.7 1.3E+02 0.0045 22.6 4.8 60 101-162 9-68 (145)
356 2o03_A Probable zinc uptake re 21.6 1.7E+02 0.0059 21.4 5.3 43 214-256 16-58 (131)
357 3mwm_A ZUR, putative metal upt 21.4 1.4E+02 0.0048 22.2 4.8 35 80-114 17-51 (139)
358 1bd8_A P19INK4D CDK4/6 inhibit 20.4 2.6E+02 0.0089 20.5 6.9 15 87-101 10-24 (156)
359 2cfu_A SDSA1; SDS-hydrolase, l 20.1 2.4E+02 0.0081 27.9 7.4 62 397-461 437-498 (658)
360 3bu8_A Telomeric repeat-bindin 20.1 3.6E+02 0.012 22.0 7.1 69 325-396 88-163 (235)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-39 Score=325.24 Aligned_cols=427 Identities=10% Similarity=0.009 Sum_probs=375.6
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPD 110 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 110 (490)
+++..++.++..|. +.|++++|..+|+++. .|+..+|..++.++.+.|++++|..+|+++... +++
T Consensus 82 ~~~~~~~~~~~~~~----------~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 149 (597)
T 2xpi_A 82 SREDYLRLWRHDAL----------MQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRS 149 (597)
T ss_dssp CHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTC
T ss_pred HHHHHHHHHHHHHH----------HccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccc
Confidence 67888999999999 8999999999998875 477788899999999999999999999988653 678
Q ss_pred cccHHHHHHHHhccCCcHHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC
Q 042265 111 FYSFPFLLRACSQLCSHSLAQTIHSQVLKL---------------GFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR 175 (490)
Q Consensus 111 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 175 (490)
..+++.++.++.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999853221 23456889999999999999999999999998543
Q ss_pred Cc---hhHHH--------------------------------------HHHHHHhcCCHHHHHHHHhhCCC--CCeehHH
Q 042265 176 DV---VSCNT--------------------------------------LIDGYVKAGDLAHARQLFDRMPF--RDAVSWG 212 (490)
Q Consensus 176 ~~---~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 212 (490)
++ ..+.. ++..|.+.|++++|.++|+++.. ++..+|+
T Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 309 (597)
T 2xpi_A 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309 (597)
T ss_dssp CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHH
T ss_pred CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHH
Confidence 22 23222 24456688999999999999987 6899999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+..++..++.+|.+.|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999865 3467789999999999999999999999999765 678899999999999999
Q ss_pred CHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 042265 293 YINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDE 369 (490)
Q Consensus 293 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (490)
++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|++
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998753 467799999999999999999999999999864 34788999999999999999999999999
Q ss_pred hHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-------CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 370 MESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-------MGGD--VFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
+.+ ..+.+..+|..++..|.+.|++++|.++|+++. ..|+ ..+|..++.+|.+.|++++|++.++++.+
T Consensus 467 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 467 SYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 998 455678899999999999999999999999873 2555 78999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 441 LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
..|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-38 Score=318.05 Aligned_cols=410 Identities=10% Similarity=-0.008 Sum_probs=349.6
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
+.|.+..+...++.++.+++..|+.++..+.+.|++++|+.+|++|.+. .|+..++..++.+|.+.|++++|..+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6788888889999988889999999999999999999999999999863 58889999999999999999999999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC-------------------CchhHHHHHHHHHhcCCHHHHH
Q 042265 137 VLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR-------------------DVVSCNTLIDGYVKAGDLAHAR 197 (490)
Q Consensus 137 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~ 197 (490)
+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.
T Consensus 143 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 143 EDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 8653 788999999999999999999999999975443 3779999999999999999999
Q ss_pred HHHhhCCCC---CeehHHHH--------------------------------------HHHHHhcCChhHHHHHHHHHHh
Q 042265 198 QLFDRMPFR---DAVSWGTL--------------------------------------VAGYAQSDQCEEAIQLFCNMMD 236 (490)
Q Consensus 198 ~~~~~~~~~---~~~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~m~~ 236 (490)
++|+++... +...+..+ +..|.+.|++++|.++|+++.+
T Consensus 221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 999998633 22333322 4456678999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHH
Q 042265 237 LDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWN 313 (490)
Q Consensus 237 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~ 313 (490)
. +++..++..++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+++++.+ .+..+|+
T Consensus 301 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 301 L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 5 5899999999999999999999999999999887 66889999999999999999999999998753 4678999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc
Q 042265 314 AMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA 393 (490)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (490)
.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+ ..+.+..++..++.+|.+.
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHc
Confidence 99999999999999999999998853 33678999999999999999999999999998 5567889999999999999
Q ss_pred CCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC-CchHHHHHHHHHhcCChHH
Q 042265 394 GLIEEALEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL------KPED-GGVYKVLADVYANADRWED 464 (490)
Q Consensus 394 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~g~~~~ 464 (490)
|++++|.++|+++.. ..++.+|..++..|.+.|++++|+++++++.+. .|++ ..++..++.+|.+.|++++
T Consensus 455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 999999999998752 238999999999999999999999999999996 5553 5689999999999999999
Q ss_pred HHHHHHHHhcCC
Q 042265 465 VVKIRRSLDAGK 476 (490)
Q Consensus 465 A~~~~~~m~~~~ 476 (490)
|.++++++.+.+
T Consensus 535 A~~~~~~~~~~~ 546 (597)
T 2xpi_A 535 AIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.8e-29 Score=237.81 Aligned_cols=373 Identities=14% Similarity=0.050 Sum_probs=315.1
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
+...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778899999999998887753 2334456666777788899999999998888875 7788889999999999999
Q ss_pred hHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 042265 162 LRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDLAHARQLFDRMP--FR-DAVSWGTLVAGYAQSDQCEEAIQLFCNMM 235 (490)
Q Consensus 162 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 235 (490)
+++|...|+++.. | +..+|..+..++.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999998843 4 44578889999999999999999998765 23 45678888889999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehH
Q 042265 236 DLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTW 312 (490)
Q Consensus 236 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 312 (490)
+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++..+ .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 763 3356788899999999999999999999999876 56678888999999999999999999987653 356788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
..+...+...|++++|++.++++.+.. +.+..++..+...+.+.|++++|...++++.+ ..+.+..++..+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHH
Confidence 899999999999999999999998864 22567888999999999999999999999998 456788899999999999
Q ss_pred cCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 393 AGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
.|++++|.+.++++.. .| +..++..++..+.+.|++++|+..++++++..|+++.++..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998653 34 788999999999999999999999999999999999999999998877664
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1e-27 Score=227.05 Aligned_cols=353 Identities=16% Similarity=0.064 Sum_probs=311.3
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCH
Q 042265 117 LLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDL 193 (490)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 193 (490)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+ | +..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3455678899999999999999875 66777888888999999999999999988744 3 567899999999999999
Q ss_pred HHHHHHHhhCC--CC-CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 042265 194 AHARQLFDRMP--FR-DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIE 270 (490)
Q Consensus 194 ~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 270 (490)
++|.+.|+++. .| +..+|..++.++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999875 33 56689999999999999999999999998864 2345567788889999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 042265 271 LNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTI 347 (490)
Q Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 347 (490)
+.. +.+..++..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|+..+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 66788999999999999999999999998764 356688889999999999999999999998763 2257888
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH 425 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 425 (490)
..+...+...|++++|...|+++.+ ..+.+..++..+...+.+.|++++|.+.++++. ..| +..++..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999998 455567889999999999999999999999865 223 889999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|++++|+..++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999864
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.9e-28 Score=236.16 Aligned_cols=184 Identities=11% Similarity=0.143 Sum_probs=165.1
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHcCCCCChh
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGE---------LEQGKNIHRYIELNQIRVDSF 279 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 279 (490)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788889999999999999999999999999999999999999987654 678899999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccC----CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 042265 280 LSTGLVDFYAKCGYINTAIEIFESSQ----EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355 (490)
Q Consensus 280 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 355 (490)
+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998876 47888999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA 393 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (490)
+.|++++|.+++++|.+. +..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999987 9999999999998888653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.7e-28 Score=234.14 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=165.3
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC---------cHHHHHHHHHHHHhCCCCchh
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS---------HSLAQTIHSQVLKLGFICDVF 147 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 147 (490)
..++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888999999999999999999999999999999999999999987654 578999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHH
Q 042265 148 VLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 148 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 227 (490)
+|+.+|.+|++.|++++|.++|++|.+.. ..||..+|+.+|.+|++.|++++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------------~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG---------------------------IQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------CCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCccceehHHHHHHHHCCCHHHH
Confidence 99999999999999999998888875332 246777888888888888888899
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042265 228 IQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC 291 (490)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (490)
.++|++|.+.|+.||..||+.|+.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999888888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.2e-25 Score=217.96 Aligned_cols=393 Identities=10% Similarity=-0.037 Sum_probs=313.0
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 042265 76 TFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHV 155 (490)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 155 (490)
...|......+.+.|++++|+..|+++.+.. |+...|..+..++...|++++|...++.+.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456677888899999999999999998864 788889999999999999999999999999876 6677889999999
Q ss_pred HHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHH--------------------------------
Q 042265 156 YCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLF-------------------------------- 200 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~-------------------------------- 200 (490)
+.+.|++++|...|+++... +......++..+.+......+.+.+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999988443 2333333333333222222211111
Q ss_pred ------hhCCC---------C-CeehHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCCCC--------CHHHHHH
Q 042265 201 ------DRMPF---------R-DAVSWGTLVAGYAQ---SDQCEEAIQLFCNMMD-----LDIKP--------DNIALVS 248 (490)
Q Consensus 201 ------~~~~~---------~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~~~~~ 248 (490)
..... + +...+......+.. .|++++|...|+++.+ ....| +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11110 1 13344455555554 8999999999999887 31122 3456778
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCCh
Q 042265 249 ALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLG 325 (490)
Q Consensus 249 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 325 (490)
+..++...|++++|...++.+.+.... ..++..+..+|...|++++|...++++.+ .+...+..+...+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888999999999999999999988633 88889999999999999999999988764 3567888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh
Q 042265 326 RLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 326 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
++|...++++.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+++
T Consensus 321 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988643 35678888899999999999999999999883 455678889999999999999999999987
Q ss_pred CCC----CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 406 MPM----GGD----VFVWSGLLGGCRI---HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 406 ~~~----~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+.. .++ ...+..++..+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|...+++..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 642 122 4588899999999 99999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 042265 475 GK 476 (490)
Q Consensus 475 ~~ 476 (490)
..
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 53
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.4e-25 Score=218.81 Aligned_cols=401 Identities=11% Similarity=-0.064 Sum_probs=322.9
Q ss_pred hHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc
Q 042265 36 ILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS 113 (490)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 113 (490)
..+..+...+. +.|++++|++.|+++. .|+..+|..+..++.+.|++++|+..++++.+.+ +.+...
T Consensus 7 ~~~~~~g~~~~----------~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 75 (514)
T 2gw1_A 7 LALKDKGNQFF----------RNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKV 75 (514)
T ss_dssp HHHHHHHHHHH----------HTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred HHHHHHHHHHH----------HhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHH
Confidence 34556677788 7999999999999875 4789999999999999999999999999999864 345568
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH-----------------------
Q 042265 114 FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFD----------------------- 170 (490)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~----------------------- 170 (490)
+..+..++...|++++|...|+.+.+.+ +++......++..+........+.+.+.
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh
Confidence 9999999999999999999999999876 4555555555554444332222222221
Q ss_pred ---------------hcc---------cC-CchhHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C
Q 042265 171 ---------------EIL---------YR-DVVSCNTLIDGYVK---AGDLAHARQLFDRMPF----------------R 206 (490)
Q Consensus 171 ---------------~~~---------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~ 206 (490)
... .| +...+......+.. .|++++|...|+++.. +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp --CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred ccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 110 01 13344444444444 8999999999987644 2
Q ss_pred -CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042265 207 -DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLV 285 (490)
Q Consensus 207 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (490)
+..++..+...+...|++++|...++++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 311 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH
Confidence 35678889999999999999999999998865 447788999999999999999999999999875 66788899999
Q ss_pred HHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 042265 286 DFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDE 362 (490)
Q Consensus 286 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 362 (490)
.+|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998653 356788899999999999999999999998763 2356788889999999999999
Q ss_pred HHHHHHHhHHhhCCCCC----chHHHHHHhhhhh---cCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 042265 363 ARKLFDEMESVYGVSKE----LKHYGCMADLLGR---AGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 363 a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
|...++++.+.....++ ...+..+...+.. .|++++|.+.++++. ..| +..++..+...+...|++++|..
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875222232 3388899999999 999999999998864 223 78899999999999999999999
Q ss_pred HHHHHHhhCCCCCchHHHH
Q 042265 434 AAEHVMKLKPEDGGVYKVL 452 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l 452 (490)
.++++++..|.++..+..+
T Consensus 471 ~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 471 LFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHH
Confidence 9999999999988776655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=9.3e-24 Score=203.94 Aligned_cols=346 Identities=11% Similarity=0.042 Sum_probs=217.2
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 042265 73 YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
+.+...|..+...+.+.|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3467789999999999999999999999998753 4567788999999999999999999999999986 6678899999
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCc------hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhH
Q 042265 153 MHVYCVFHRLRDAQELFDEILYRDV------VSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEE 226 (490)
Q Consensus 153 i~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (490)
..+|.+.|++++|.+.|+++...++ ..+..++..+... .+..+...+...|++++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHH
Confidence 9999999999999999999966433 4555554432111 12223334445555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 042265 227 AIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE 306 (490)
Q Consensus 227 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 306 (490)
|...|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++..++.+|...|++++|...|+++.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555432 2244445555555555555555555555555443 33444455555555555555555555544432
Q ss_pred --C-CeehHHH------------HHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhccCcHHHHHHH
Q 042265 307 --K-NLFTWNA------------MLVGLAMHGLGRLSLVYFSRMIEARIKPD-----GVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 307 --~-~~~~~~~------------l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
| +...+.. +...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1 1222222 255666667777777777776653 233 23555666666677777777777
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH------------HHhcC-----C
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGG------------CRIHG-----N 427 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~------------~~~~~-----~ 427 (490)
++++.+. .+.+...+..+..+|...|++++|...++++. ..| +...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 7776652 33455666666667777777777777766643 223 45555555422 22233 4
Q ss_pred HHHHHHHHHH-HHhhCCCC
Q 042265 428 VEIAEAAAEH-VMKLKPED 445 (490)
Q Consensus 428 ~~~a~~~~~~-~~~~~p~~ 445 (490)
.+++.+.+++ +++..|++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 5666777775 55566654
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.5e-24 Score=211.79 Aligned_cols=392 Identities=9% Similarity=-0.033 Sum_probs=292.7
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
....|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++.+.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35677888889999999999999999998864 4466788889999999999999999999999886 677888999999
Q ss_pred HHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-----------------------------
Q 042265 155 VYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPF----------------------------- 205 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------------- 205 (490)
++...|++++|...|+.+ ..++......+..+...+....|...++.+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999999999643 32222222233334444444555555544432
Q ss_pred --------CCee---hHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHccCC
Q 042265 206 --------RDAV---SWGTLVAGYAQ--------SDQCEEAIQLFCNMMDLDIKPD--------NIALVSALSACARLGE 258 (490)
Q Consensus 206 --------~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~--------~~~~~~l~~~~~~~~~ 258 (490)
.+.. ....+...+.. .|++++|..+++++.+.. |+ ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhccc
Confidence 1111 22222222221 247888888888888753 33 2246666677888899
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHH
Q 042265 259 LEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRM 335 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 335 (490)
+++|...++.+.+.. |+...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999988874 4477888888889999999999999887653 35678888888999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC----CC-
Q 042265 336 IEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM----GG- 410 (490)
Q Consensus 336 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~- 410 (490)
.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.. .+
T Consensus 337 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 87642 24577888888888999999999999998883 455677888889999999999999998887531 11
Q ss_pred ---CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 411 ---DVFVWSGLLGGCRIH----------GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 411 ---~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
....+......+... |++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 333455556667777 999999999999999999988899999999999999999999998887643
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=5.1e-23 Score=198.73 Aligned_cols=320 Identities=13% Similarity=0.054 Sum_probs=236.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhccc---CCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeehHHHHHHHH
Q 042265 145 DVFVLNSLMHVYCVFHRLRDAQELFDEILY---RDVVSCNTLIDGYVKAGDLAHARQLFDRMP---FRDAVSWGTLVAGY 218 (490)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 218 (490)
+...+..+...+.+.|++++|..+|+++.. .+..+|..+..++...|++++|...|+++. ..+..++..++.+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344444444444444444444444444422 133344444444455555555555544432 22455666777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH----HHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCChhhHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPDN----IALVSA------------LSACARLGELEQGKNIHRYIELNQIRVDSFLST 282 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (490)
.+.|++++|.+.|+++.+.. |+. ..+..+ ...+...|++++|...++.+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 77777777777777776643 332 333333 455888999999999999999876 67888999
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH--------
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD-GVTILGA-------- 350 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l-------- 350 (490)
.++.+|.+.|++++|...|+++.+ .+..+|..++..+...|++++|+..|+++... .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 46789999999999999999999999999875 343 3344433
Q ss_pred ----HHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHH
Q 042265 351 ----LVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLG 420 (490)
Q Consensus 351 ----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 420 (490)
...+...|++++|...|+++.+. .+.+ ...+..++.++.+.|++++|...++++. ..| +..+|..++.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 77889999999999999999884 2223 3478889999999999999999999864 234 8899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH------------HHhcC-----ChHHHHHHHHH
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV------------YANAD-----RWEDVVKIRRS 471 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 471 (490)
+|...|++++|+..++++++..|+++.++..++.+ |...| +.+++.+.+++
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999899888844 44455 56677777776
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.4e-22 Score=198.56 Aligned_cols=397 Identities=13% Similarity=-0.002 Sum_probs=305.1
Q ss_pred chhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCC
Q 042265 34 CHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPD 110 (490)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 110 (490)
....+..+...+. +.|++++|++.|+++. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+
T Consensus 24 ~a~~~~~~g~~~~----------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 92 (537)
T 3fp2_A 24 YAVQLKNRGNHFF----------TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDH 92 (537)
T ss_dssp HHHHHHHHHHHHH----------HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHH----------HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cch
Confidence 3456777888888 8999999999999864 5678899999999999999999999999998864 445
Q ss_pred cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---------------
Q 042265 111 FYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR--------------- 175 (490)
Q Consensus 111 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------- 175 (490)
...+..+..++...|++++|...|+. ... .|+.. ...+..+...+....|...++++...
T Consensus 93 ~~~~~~la~~~~~~g~~~~A~~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 167 (537)
T 3fp2_A 93 SKALLRRASANESLGNFTDAMFDLSV-LSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL 167 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-Hhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH
Confidence 67888899999999999999999963 332 22211 12233444445556667666666332
Q ss_pred ----------------------Cch---hHHHHHHHHH--------hcCCHHHHHHHHhhCCCCCe----------ehHH
Q 042265 176 ----------------------DVV---SCNTLIDGYV--------KAGDLAHARQLFDRMPFRDA----------VSWG 212 (490)
Q Consensus 176 ----------------------~~~---~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~----------~~~~ 212 (490)
+.. ....+...+. ..|++++|..+|+++...++ .++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 168 ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247 (537)
T ss_dssp HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHH
Confidence 111 1222222211 22578999999988765422 2577
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
.+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 7788899999999999999999985 4667888999999999999999999999999886 667889999999999999
Q ss_pred CHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 042265 293 YINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDE 369 (490)
Q Consensus 293 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (490)
++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999998763 356789999999999999999999999998864 33567888899999999999999999999
Q ss_pred hHHhhCCCCC----chHHHHHHhhhhhc----------CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 042265 370 MESVYGVSKE----LKHYGCMADLLGRA----------GLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 370 ~~~~~~~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
+.+.....++ ...+..+...+... |++++|...+++.. ..| +...+..+...+...|++++|..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 8774211121 12234455677777 99999999999865 233 78899999999999999999999
Q ss_pred HHHHHHhhCCCCCchHH
Q 042265 434 AAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~ 450 (490)
.++++++..|.+.....
T Consensus 484 ~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 484 LFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999998875544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=4.9e-20 Score=171.89 Aligned_cols=205 Identities=11% Similarity=-0.004 Sum_probs=135.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChH
Q 042265 250 LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGR 326 (490)
Q Consensus 250 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 326 (490)
...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+ .+...+..+...+...|+++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345555666666666666665554 44555566666666666666666666655443 24455666666666667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH------------HHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc----hHHHHHHhhh
Q 042265 327 LSLVYFSRMIEARIKPDGVTIL------------GALVGCSHAGLVDEARKLFDEMESVYGVSKEL----KHYGCMADLL 390 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~ 390 (490)
+|...+++..+.... +...+. .+...+...|++++|...++++.+. .+.+. ..+..+...+
T Consensus 206 ~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 206 LSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHH
Confidence 777777666654211 222221 2355577788888888888888874 22232 2344567778
Q ss_pred hhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 391 GRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
...|++++|...+++... .| +..++..++..+...|++++|...++++++.+|+++.++..+..+...
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 888888888888877542 33 778888888888888888888888888888888888777777766544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.1e-19 Score=169.61 Aligned_cols=298 Identities=10% Similarity=0.019 Sum_probs=211.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChh
Q 042265 146 VFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCE 225 (490)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 225 (490)
+..+..+...+...|++++|...|+++.+.+ +.+..++..+...+...|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD----------------------------PDNYIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------------cccHHHHHHHHHHHHHccCHH
Confidence 3455556666666666666666666653211 112334444444455555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CChhhHH------------HHHHHHHh
Q 042265 226 EAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR---VDSFLST------------GLVDFYAK 290 (490)
Q Consensus 226 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~------------~l~~~~~~ 290 (490)
+|...++++.+.. +.+...+..+..++...|++++|...++.+.+.. + .+...+. .+...+..
T Consensus 55 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 55 AALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544432 1233444445555555555555555555554432 2 2222332 23678899
Q ss_pred cCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 291 CGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
.|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998763 466788899999999999999999999998864 346788899999999999999999999
Q ss_pred HHhHHhhCCCCCchHHH------------HHHhhhhhcCCHHHHHHHHhhCC-CCC-CH----HHHHHHHHHHHhcCCHH
Q 042265 368 DEMESVYGVSKELKHYG------------CMADLLGRAGLIEEALEMIKKMP-MGG-DV----FVWSGLLGGCRIHGNVE 429 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~----~~~~~l~~~~~~~~~~~ 429 (490)
+++.+. .+.+...+. .+...+.+.|++++|...++++. ..| +. ..+..+...+...|+++
T Consensus 212 ~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence 999884 333443333 23667889999999999998854 233 33 34556788899999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 430 IAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 430 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+|+..++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998764
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=7.1e-19 Score=171.43 Aligned_cols=367 Identities=11% Similarity=-0.048 Sum_probs=306.5
Q ss_pred CCCcccHHHHHHHHHc----CCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCC
Q 042265 73 YPSTFSYNTIIRAHTL----FSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ----LCSHSLAQTIHSQVLKLGFIC 144 (490)
Q Consensus 73 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 144 (490)
..+..++..+...+.. .+++++|+..|++..+.| +...+..|...+.. .+++++|.+.|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4577888888888888 899999999999998864 56677888888887 899999999999998865
Q ss_pred chhHHHHHHHHHHh----cCChHHHHHHHHhcccC-CchhHHHHHHHHHh----cCCHHHHHHHHhhCCCC-CeehHHHH
Q 042265 145 DVFVLNSLMHVYCV----FHRLRDAQELFDEILYR-DVVSCNTLIDGYVK----AGDLAHARQLFDRMPFR-DAVSWGTL 214 (490)
Q Consensus 145 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l 214 (490)
+...+..|...|.. .+++++|.+.|++..+. +...+..+...|.. .+++++|.+.|++..+. +..++..+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56777788888888 88999999999998665 66788888888887 88999999999886543 77888899
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 215 VAGYAQ----SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACAR----LGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 215 ~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
...|.. .+++++|.+.|++..+.| +...+..+...+.. .++.++|..++++..+.+ +...+..+..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 263 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY 263 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 999988 899999999999998865 55677777777775 789999999999998765 4556777888
Q ss_pred HHHh----cCCHHHHHHHHhccCCC-CeehHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 042265 287 FYAK----CGYINTAIEIFESSQEK-NLFTWNAMLVGLAMH-----GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH 356 (490)
Q Consensus 287 ~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 356 (490)
.|.. .+++++|...|++..+. ++..+..+...|... +++++|+..|++..+.| +...+..+...+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 8888 89999999999987654 667788888888887 89999999999998875 44566667777766
Q ss_pred cC---cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 042265 357 AG---LVDEARKLFDEMESVYGVSKELKHYGCMADLLGR----AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----H 425 (490)
Q Consensus 357 ~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~ 425 (490)
.| ++++|.++|++..+. .++..+..+...|.. .+++++|.++|++....+++..+..+...|.. .
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 56 899999999999884 456778888888888 89999999999998777789999999999988 8
Q ss_pred CCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHh
Q 042265 426 GNVEIAEAAAEHVMKLKPE---DGGVYKVLADVYAN 458 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 458 (490)
+++++|...|+++.+..|+ ++.+...++..+..
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999998844 66666666665543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.9e-19 Score=165.86 Aligned_cols=244 Identities=12% Similarity=0.059 Sum_probs=144.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 216 AGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG-ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
.++...|++++|...++++.+.. +.+...+..+...+...| ++++|...++++.+.. +.+...+..+..++...|++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCH
Confidence 33333344444444444433321 112333333444444444 4444444444444332 22333444444444444444
Q ss_pred HHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 295 NTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 295 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
++|...|+++.+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444444444331 123445555566666666666666666666543 2245666667777777777777777777776
Q ss_pred HhhC-------CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 372 SVYG-------VSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 372 ~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
+... .+.....+..+...|...|++++|...+++... .| +...+..+...+...|++++|...++++++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 5311 133456777788888888888888888877542 22 67788888888999999999999999999999
Q ss_pred CCCCchHHHHHHHH-HhcCCh
Q 042265 443 PEDGGVYKVLADVY-ANADRW 462 (490)
Q Consensus 443 p~~~~~~~~l~~~~-~~~g~~ 462 (490)
|+++.++..++.++ ...|+.
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC-
T ss_pred CCchHHHHHHHHHHHHHhCch
Confidence 99888888888888 455554
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=3.2e-18 Score=166.79 Aligned_cols=362 Identities=11% Similarity=-0.011 Sum_probs=304.3
Q ss_pred hHHHHHHHhhhCCCCCCcccHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHH
Q 042265 94 NAVVLFSQMRTVSIPPDFYSFPFLLRACSQ----LCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV----FHRLRDA 165 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 165 (490)
.++..++...+.| +...+..+...+.. .+++++|...|+...+.| +...+..|...|.. .++.++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455566655543 66677777777776 799999999999998865 56778888899998 8999999
Q ss_pred HHHHHhcccC-CchhHHHHHHHHHh----cCCHHHHHHHHhhCCCC-CeehHHHHHHHHHh----cCChhHHHHHHHHHH
Q 042265 166 QELFDEILYR-DVVSCNTLIDGYVK----AGDLAHARQLFDRMPFR-DAVSWGTLVAGYAQ----SDQCEEAIQLFCNMM 235 (490)
Q Consensus 166 ~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 235 (490)
.+.|++..+. +...+..+...|.. .+++++|.+.|++.... +...+..+...|.. .+++++|.+.|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9999998665 66788888888888 88999999999986644 67788889999988 889999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHhccCCC
Q 042265 236 DLDIKPDNIALVSALSACAR----LGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK----CGYINTAIEIFESSQEK 307 (490)
Q Consensus 236 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 307 (490)
+.| +...+..+...+.. .++.++|..++++..+.+ +...+..+...|.. .+++++|..+|++..+.
T Consensus 179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 875 66778888888887 899999999999999875 45677788888886 88999999999987654
Q ss_pred -CeehHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-----CcHHHHHHHHHHhHHhhCCC
Q 042265 308 -NLFTWNAMLVGLAM----HGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA-----GLVDEARKLFDEMESVYGVS 377 (490)
Q Consensus 308 -~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~ 377 (490)
++..+..+...|.. .+++++|+..|++..+.| +...+..+...+... +++++|...|++..+. +
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~-- 326 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G-- 326 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T--
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C--
Confidence 66677788888887 899999999999998764 456666777777776 8999999999999884 3
Q ss_pred CCchHHHHHHhhhhhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 378 KELKHYGCMADLLGRAG---LIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
+...+..+...|...| ++++|.++|++....+++..+..+...|.. .+++++|...++++.+.. ++.++.
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 4566777888887766 789999999998777899999999999998 899999999999999854 466899
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhcCC
Q 042265 451 VLADVYAN----ADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 451 ~l~~~~~~----~g~~~~A~~~~~~m~~~~ 476 (490)
.|+.+|.+ .+++++|...|++..+.+
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999998 899999999999988776
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=5.2e-20 Score=172.60 Aligned_cols=260 Identities=13% Similarity=-0.018 Sum_probs=193.1
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445566666666666666666666666543 2344556666666666666666666666666554 4455566666666
Q ss_pred HHhcCCHHHHHHHHhccCCC---CeehHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEK---NLFTWNA---------------MLVGLAMHGLGRLSLVYFSRMIEARIKP-DGVTIL 348 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~---------------l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~ 348 (490)
|...|++++|.+.++++.+. +...+.. .+..+...|++++|...++++.+..... +..++.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 66666666666666654421 1111110 1333348899999999999998864221 478889
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC
Q 042265 349 GALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHG 426 (490)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 426 (490)
.+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++. ..| +...+..++..+...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999883 45567889999999999999999999998864 233 7889999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 427 NVEIAEAAAEHVMKLKPED-----------GGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 427 ~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
++++|...++++++..|++ ..++..++.+|...|++++|..++++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999988877 67899999999999999999998764
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.4e-19 Score=164.17 Aligned_cols=265 Identities=10% Similarity=-0.009 Sum_probs=232.3
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042265 206 RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLV 285 (490)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (490)
.+...+..++..+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 367788889999999999999999999998764 3345566778888899999999999999999876 66788899999
Q ss_pred HHHHhcC-CHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 042265 286 DFYAKCG-YINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD 361 (490)
Q Consensus 286 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 361 (490)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 35678999999999999999999999999886432 4566777889999999999
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-----------CCCHHHHHHHHHHHHhcCCHHH
Q 042265 362 EARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-----------GGDVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 430 (490)
+|...++++.+ ..+.+...+..+...+...|++++|...+++... .....++..++..+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998 5566778899999999999999999999987532 2256789999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 431 AEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 431 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987654
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=6.2e-18 Score=166.51 Aligned_cols=394 Identities=10% Similarity=0.009 Sum_probs=280.7
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 042265 73 YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
+.+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|+++.|..+|+++++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346778888887 477888888888888888752 3455578888888888888888888888888753 577777766
Q ss_pred HHHH-HhcCChHHHHH----HHHhccc------CCchhHHHHHHHHHh---------cCCHHHHHHHHhhCCC-CCe---
Q 042265 153 MHVY-CVFHRLRDAQE----LFDEILY------RDVVSCNTLIDGYVK---------AGDLAHARQLFDRMPF-RDA--- 208 (490)
Q Consensus 153 i~~~-~~~g~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~--- 208 (490)
+... ...|+.+.|.+ +|++... .+...|...+....+ .|+++.|..+|++... |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34566666554 5555421 244567777666554 6788888888887553 211
Q ss_pred ehHHHHHHHH-------------HhcCChhHHHHHHHHH------HhCC---CCCCH--------HHHHHHHHHHHc---
Q 042265 209 VSWGTLVAGY-------------AQSDQCEEAIQLFCNM------MDLD---IKPDN--------IALVSALSACAR--- 255 (490)
Q Consensus 209 ~~~~~l~~~~-------------~~~g~~~~A~~~~~~m------~~~~---~~p~~--------~~~~~l~~~~~~--- 255 (490)
..|....... .+.+++..|..++.+. .+.. ++|+. ..|...+.....
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 1222221110 1235677777777653 2221 34442 344444433222
Q ss_pred -cCCh----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHhccCC---C-CeehH
Q 042265 256 -LGEL----EQGKNIHRYIELNQIRVDSFLSTGLVDFYAK-------CGYIN-------TAIEIFESSQE---K-NLFTW 312 (490)
Q Consensus 256 -~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~ 312 (490)
.++. ..+..+|+++.... +.+...|..++..+.+ .|+++ +|..+|++..+ | +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 1233 36778899988874 6678888888888876 68887 89999998774 3 46688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh-
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIKPD--GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL- 389 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 389 (490)
..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+. .+.+...+...+..
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHH
Confidence 89999999999999999999999985 454 247888888888999999999999999873 33334444333322
Q ss_pred hhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc----hHHHHHHHHHhcCChH
Q 042265 390 LGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG----VYKVLADVYANADRWE 463 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~ 463 (490)
+...|+.++|..+|++.. ..| ++..|..++..+.+.|+.++|..+|+++++..|.++. .|...+......|+.+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 346899999999999754 334 7899999999999999999999999999998776654 7778888888999999
Q ss_pred HHHHHHHHHhcC
Q 042265 464 DVVKIRRSLDAG 475 (490)
Q Consensus 464 ~A~~~~~~m~~~ 475 (490)
.+..+.+++.+.
T Consensus 481 ~~~~~~~r~~~~ 492 (530)
T 2ooe_A 481 SILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888654
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=4.4e-17 Score=166.74 Aligned_cols=393 Identities=10% Similarity=0.037 Sum_probs=282.0
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC-CC-----CcccHHHHHHHHHcCCC
Q 042265 18 QIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP-YP-----STFSYNTIIRAHTLFSS 91 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~g~ 91 (490)
++.++..... ++-+-+|.--...++.|. ..|.+.+|+++++++. .| +...-+.++....+. +
T Consensus 969 ~Lidqv~a~a-L~e~~~PeeVs~~vKaf~----------~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D 1036 (1630)
T 1xi4_A 969 PLIDQVVQTA-LSETQDPEEVSVTVKAFM----------TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-D 1036 (1630)
T ss_pred HHHHHHHHhh-cccccCHHHhHHHHHHHH----------hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-C
Confidence 3444443333 332345555566677788 7788888888888764 22 234555666666666 5
Q ss_pred chhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 042265 92 PLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDE 171 (490)
Q Consensus 92 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 171 (490)
..+..+..++.... ....+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++
T Consensus 1037 ~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aer 1101 (1630)
T 1xi4_A 1037 RTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAER 1101 (1630)
T ss_pred hhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHh
Confidence 56666665554421 13446677778888888888888742 11222222322 67888888888887
Q ss_pred cccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042265 172 ILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALS 251 (490)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 251 (490)
. .++.+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|.++|...++.. ++....+.++.
T Consensus 1102 v--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1102 C--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred c--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 6 34668889999999999999999999775 577788889999999999999999998877754 33333345888
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHH
Q 042265 252 ACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVY 331 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 331 (490)
+|++.++++....+. + .++...+..+...|...|++++|..+|..+ ..|..+...+.+.|++++|.+.
T Consensus 1176 aYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHH
Confidence 888888887644442 1 345566667888999999999999999885 4788999999999999999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C
Q 042265 332 FSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G 410 (490)
Q Consensus 332 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 410 (490)
+++. .+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..... +
T Consensus 1244 arKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1244 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 8876 35688888888898899988888766543 235566778899999999999999999875432 2
Q ss_pred -CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCC-----CCCchHHHHHHHHHhcCChHHHHH
Q 042265 411 -DVFVWSGLLGGCRIH--GNVEIAEAAAEHVMKLKP-----EDGGVYKVLADVYANADRWEDVVK 467 (490)
Q Consensus 411 -~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 467 (490)
....|..+...+.+. ++..++.+.|..-..+.| .+...|..+...|.+.|+++.|..
T Consensus 1312 aH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 556676676666654 456666666666555555 566688899999999999999884
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=2e-19 Score=168.44 Aligned_cols=261 Identities=13% Similarity=-0.053 Sum_probs=206.2
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45567777888888888888888888887754 3456677888888888888888888888887765 556777888888
Q ss_pred HHHhcCCHHHHHHHHhccCCCC-------------eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQEKN-------------LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK-PDGVTILGALV 352 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~ 352 (490)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888887765311 223345577888999999999999999886432 25788999999
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 430 (490)
.+...|++++|...++++.+ ..+.+..++..+..+|...|++++|...++++. ..| +..++..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998 455678899999999999999999999998864 234 78999999999999999999
Q ss_pred HHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 431 AEAAAEHVMKLKPE------------DGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 431 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
|...++++++..|+ +..++..++.++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999997776 356899999999999999999888764
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.3e-18 Score=160.14 Aligned_cols=236 Identities=13% Similarity=0.142 Sum_probs=90.2
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
+.|++++|.++++++++| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999766 49999999999999999999999652 6788999999999999999999998887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHH
Q 042265 137 VLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVA 216 (490)
Q Consensus 137 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 216 (490)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7764 45678899999999999999998888753 67778999999999999999999999887 47888999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042265 217 GYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINT 296 (490)
Q Consensus 217 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 296 (490)
++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 999999999999988887 2678888888888888888888544332 22333334456667777777777
Q ss_pred HHHHHhccCCC---CeehHHHHHHHHHH
Q 042265 297 AIEIFESSQEK---NLFTWNAMLVGLAM 321 (490)
Q Consensus 297 A~~~~~~~~~~---~~~~~~~l~~~~~~ 321 (490)
|..+++....- ....|+-+.-+|++
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 77777665542 23345555444443
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2e-17 Score=162.91 Aligned_cols=404 Identities=9% Similarity=0.004 Sum_probs=295.5
Q ss_pred HHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHH
Q 042265 20 HAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAV 96 (490)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 96 (490)
++..++.. |.+...|..++.. . +.|++++|..+|+++. +.+...|..++..+.+.|++++|.
T Consensus 2 le~al~~~----P~~~~~w~~l~~~-~----------~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~ 66 (530)
T 2ooe_A 2 AEKKLEEN----PYDLDAWSILIRE-A----------QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVE 66 (530)
T ss_dssp HHHHHHHC----TTCHHHHHHHHHH-H----------HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHhhhC----CCCHHHHHHHHHH-H----------HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 34445554 2678899999985 6 6899999999999864 456778999999999999999999
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHH-hccCCcHHHHH----HHHHHHHh-CCC-CchhHHHHHHHHHHh---------cC
Q 042265 97 VLFSQMRTVSIPPDFYSFPFLLRAC-SQLCSHSLAQT----IHSQVLKL-GFI-CDVFVLNSLMHVYCV---------FH 160 (490)
Q Consensus 97 ~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~-~~~~~~~~li~~~~~---------~g 160 (490)
.+|+++.+.. |+...|...+... ...|+.+.|.+ +|+..+.. |.. ++...|...+....+ .|
T Consensus 67 ~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 144 (530)
T 2ooe_A 67 KLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ 144 (530)
T ss_dssp HHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHH
T ss_pred HHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHh
Confidence 9999999863 6777777766533 34577776665 77776653 543 356778888877665 68
Q ss_pred ChHHHHHHHHhcccC-Cc---hhHHHHHHHH-------------HhcCCHHHHHHHHhh-------CC------CCC---
Q 042265 161 RLRDAQELFDEILYR-DV---VSCNTLIDGY-------------VKAGDLAHARQLFDR-------MP------FRD--- 207 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~-~~---~~~~~l~~~~-------------~~~~~~~~a~~~~~~-------~~------~~~--- 207 (490)
++++|..+|++.++. +. ..|....... .+.++++.|..++.. +. .|+
T Consensus 145 ~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 145 RITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 899999999998652 21 2333222211 124556777765553 11 111
Q ss_pred -----eehHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------cCChH-------
Q 042265 208 -----AVSWGTLVAGYAQS----DQC----EEAIQLFCNMMDLDIKPDNIALVSALSACAR-------LGELE------- 260 (490)
Q Consensus 208 -----~~~~~~l~~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-------~~~~~------- 260 (490)
...|...+...... ++. +++..+|++.+... +-+...|...+..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 13455544333322 232 37788999988753 3466777777777765 79987
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--C-Ce-ehHHHHHHHHHHcCChHHHHHHHHHHH
Q 042265 261 QGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--K-NL-FTWNAMLVGLAMHGLGRLSLVYFSRMI 336 (490)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~ 336 (490)
+|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8999999998733356788999999999999999999999998764 3 32 478888888889999999999999998
Q ss_pred HCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C----
Q 042265 337 EARIKPDGVTILGALVG-CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G---- 410 (490)
Q Consensus 337 ~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---- 410 (490)
+... .+...+...... +...|++++|..+|++..+. .+.++..+..++..+.+.|+.++|..+|++.... |
T Consensus 384 ~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 384 EDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp TCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred hccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 7532 223333322222 33589999999999999884 3456788999999999999999999999986432 2
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 411 -DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 411 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
....|...+......|+.+.+..+.+++.+..|+
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3458888888889999999999999999998874
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=6.4e-18 Score=155.55 Aligned_cols=379 Identities=10% Similarity=0.027 Sum_probs=182.4
Q ss_pred HHHHHHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHH
Q 042265 4 NNFIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTII 83 (490)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 83 (490)
..+|..|++++.+....+.+ +++.+|+.|...+. +.|++++|++.|.+. +|...|..++
T Consensus 10 ~~ll~~~~~ld~A~~fae~~---------~~~~vWs~La~A~l----------~~g~~~eAIdsfika--~D~~~y~~V~ 68 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERC---------NEPAVWSQLAKAQL----------QKGMVKEAIDSYIKA--DDPSSYMEVV 68 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhC---------CChHHHHHHHHHHH----------HcCCHHHHHHHHHcC--CCHHHHHHHH
Confidence 35677777777776666644 34459999999999 999999999999764 5677999999
Q ss_pred HHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 042265 84 RAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR 163 (490)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 163 (490)
+.+...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.++
T Consensus 69 ~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 69 QAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp ------------------------------------------CHHHHTTTTT-------CC----------------CTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHH
Confidence 9999999999999988777764 4667889999999999999999998874 477789999999999999999
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 042265 164 DAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDN 243 (490)
Q Consensus 164 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 243 (490)
+|...|..+ ..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+ ...+
T Consensus 140 eA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~a 207 (449)
T 1b89_A 140 AAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA 207 (449)
T ss_dssp THHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCH
T ss_pred HHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCH
Confidence 999999987 589999999999999999999999994 7899999999999999999996655542 2333
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CCHHHHHHHHhccCC--------CCeehHH
Q 042265 244 IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC--GYINTAIEIFESSQE--------KNLFTWN 313 (490)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--------~~~~~~~ 313 (490)
.....++..|.+.|.+++|..+++...... +-....|+.|..+|++- +++.+.++.|..-.. .+...|.
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 445578899999999999999999998776 66778888888888764 455555566554332 2567899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 314 AMLVGLAMHGLGRLSLVYFSRMIEA-RIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
.+...|.+.++++.|..+ |.++ ...-+...|..++.--....-+-+|..+|- .. .+...+.|+.++..
T Consensus 287 e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~-----~p~~l~~ll~~l~~ 355 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF-----KPLLLNDLLMVLSP 355 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH-----CGGGHHHHHHHHGG
T ss_pred HHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc-----CHHHHHHHHHHHHh
Confidence 999999999999998874 4443 111223333333332222222223333332 21 22234455555555
Q ss_pred cCCHHHHHHHHhhC-------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042265 393 AGLIEEALEMIKKM-------------PMGGDVFVWSGLLGGCRIHGNVEIAEAAAE 436 (490)
Q Consensus 393 ~g~~~~A~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 436 (490)
.=+...+..+|++. ....+..+-.++-..|....+++.-....+
T Consensus 356 ~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 356 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp GCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55555555555443 333355555566666777777776555444
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.7e-17 Score=149.41 Aligned_cols=271 Identities=10% Similarity=-0.026 Sum_probs=209.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC----eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 042265 185 DGYVKAGDLAHARQLFDRMPFRD----AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELE 260 (490)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 260 (490)
+-....|++..|+..++.....+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 33455677777777777655433 23445667888888888888876644 1 3566677888888888888999
Q ss_pred HHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 042265 261 QGKNIHRYIELNQI-RVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR 339 (490)
Q Consensus 261 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 339 (490)
+|.+.++++...+. |.+...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+..
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 99999998887764 44566777788899999999999999998 4577788899999999999999999999998863
Q ss_pred CCCCHHHH---HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHH
Q 042265 340 IKPDGVTI---LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFV 414 (490)
Q Consensus 340 ~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~ 414 (490)
|+.... ...+..+...|++++|..+|+++.+ ..+.+...++.+..++.+.|++++|.+.|+++. ..| ++.+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 554321 1223334456999999999999998 466788899999999999999999999999854 344 8899
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 415 WSGLLGGCRIHGNVEI-AEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 415 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+..++..+...|+.++ +.++++++++..|+++.+.. ...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 9999999999999876 67899999999999984433 445555566655443
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=8.1e-16 Score=157.60 Aligned_cols=353 Identities=12% Similarity=0.089 Sum_probs=279.9
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCC--CCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSI--PPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
++.--...+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..++.+...... ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHH
Confidence 333445678899999999999999999984321 01223445566666665 6666666666654221 3447
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 042265 153 MHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFC 232 (490)
Q Consensus 153 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 232 (490)
...+...|.+++|..+|++... .....+.++ ...+++++|.++.++.. +..+|..+..++...|++++|++.|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7888999999999999999742 222223332 27889999999999874 47889999999999999999999996
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehH
Q 042265 233 NMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTW 312 (490)
Q Consensus 233 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 312 (490)
+. -|...|..++.++.+.|++++|.+++....+.. +++...+.++.+|++.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 64 467788899999999999999999999888765 44444456999999999999755554 35566778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..+|..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhh
Confidence 88999999999999999999985 479999999999999999999998773 45889999999999
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc--CChHHHHHHHH
Q 042265 393 AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA--DRWEDVVKIRR 470 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 470 (490)
.|++..|......+.. ++..+..++..|.+.|.+++|+.+++..+.++|.+...|..++.+|.+- ++..++.++|.
T Consensus 1263 ~~Ef~LA~~cgl~Iiv--~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIVV--HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hhHHHHHHHHHHhhhc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998876443 5667778999999999999999999999999999999998888888764 45666666665
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.4e-18 Score=159.93 Aligned_cols=261 Identities=10% Similarity=-0.076 Sum_probs=195.7
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566666666667777777666666543 2345566666666666677777777776666654 4455666666666
Q ss_pred HHhcCCHHHHHHHHhccCCC---CeehHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEK---NLFTWNAM--------------LV-GLAMHGLGRLSLVYFSRMIEARIKPDGVTILG 349 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 349 (490)
|...|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 77777777777666654421 12222222 22 3667789999999999998864 336788888
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGN 427 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 427 (490)
+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++. ..| +...+..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999883 45567888999999999999999999998854 233 78899999999999999
Q ss_pred HHHHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 428 VEIAEAAAEHVMKLKPE------------DGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 428 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+++|...++++++..|. ++.++..++.++.+.|++++|..++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999888 67789999999999999999999987543
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=3.5e-18 Score=160.13 Aligned_cols=307 Identities=12% Similarity=0.019 Sum_probs=150.8
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHH-HHHHhhhCCC-CC--CcccHHHHHHHHhccCCcHHHHHHH
Q 042265 59 DPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVV-LFSQMRTVSI-PP--DFYSFPFLLRACSQLCSHSLAQTIH 134 (490)
Q Consensus 59 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~ 134 (490)
+.++.+...|+.+...+.. .+.-.|++++|++ .|++..+... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4445555555554433222 2233467778877 7776554321 11 3456777777888888888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHH
Q 042265 135 SQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTL 214 (490)
Q Consensus 135 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 214 (490)
+.+.+.. +.+..++..+..++.+.|++++|...|+++.+.+ ..+..++..+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~l 138 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK----------------------------PDNQTALMAL 138 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC----------------------------CCCHHHHHHH
Confidence 8888765 5667777777888888888888887777763321 1123344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHccCChHHHHHHHHHHHHcCCCC--C
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVS---------------ALSACARLGELEQGKNIHRYIELNQIRV--D 277 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 277 (490)
...+...|++++|.+.++++.+.... +...+.. .+..+...|++++|...++++.+.. +. +
T Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~ 216 (368)
T 1fch_A 139 AVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSID 216 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCccc
Confidence 44455555555555555554443211 1111100 1222225566666666666665553 22 3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC 354 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 354 (490)
..++..+..+|.+.|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45555555555555665555555554432 234455555566666666666666666655532 22345555666666
Q ss_pred hccCcHHHHHHHHHHhHHhhCCC---------CCchHHHHHHhhhhhcCCHHHHHHHHh
Q 042265 355 SHAGLVDEARKLFDEMESVYGVS---------KELKHYGCMADLLGRAGLIEEALEMIK 404 (490)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (490)
.+.|++++|...|+++.+..... .....|..+..+|...|++++|..+++
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 66666666666666655421000 013344445555555555555544443
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=8.7e-17 Score=156.04 Aligned_cols=378 Identities=10% Similarity=-0.057 Sum_probs=220.1
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhC-----C--CCC-CcccHHHHHHHHhccCCcHHHHHHHHHHHHhC-----
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTV-----S--IPP-DFYSFPFLLRACSQLCSHSLAQTIHSQVLKLG----- 141 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 141 (490)
....||.+...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556888888888899999999988876542 1 122 23467788888888888888888888776531
Q ss_pred -C-CCchhHHHHHHHHHHhc--CChHHHHHHHHhccc--C-CchhHHHHHHH---HHhcCCHHHHHHHHhhCC---CCCe
Q 042265 142 -F-ICDVFVLNSLMHVYCVF--HRLRDAQELFDEILY--R-DVVSCNTLIDG---YVKAGDLAHARQLFDRMP---FRDA 208 (490)
Q Consensus 142 -~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~---~~~~ 208 (490)
. .....++..+..++.+. +++++|.+.|++..+ | ++..+..+..+ +...++.++|++.+++.. ..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 0 12245555555555543 467888888888743 3 33344444443 334566666766666543 2244
Q ss_pred ehHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042265 209 VSWGTLVAGYAQ----SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGL 284 (490)
Q Consensus 209 ~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (490)
.++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. |.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 555555544443 356677777777776643 3455566777777777778888877777777664 4455666666
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 285 VDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
..+|...+....+.. ... ........+..+.|...+++..+.. +.+..++..+...+...|++++|.
T Consensus 288 g~~y~~~~~~~~~~~------~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLR------ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhHH------HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence 655543221111100 000 0000111223566777777776643 223456667777888888888888
Q ss_pred HHHHHhHHhhCCCCCc--hHHHHHHh-hhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 365 KLFDEMESVYGVSKEL--KHYGCMAD-LLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
..|+++.+. ...+.. ..+..+.. .+...|++++|+..+++.. ..|+.... .+....+..++++.++
T Consensus 355 ~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~---------~~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 355 YYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---------EKMKDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH---------HHHHHHHHHHHHHHHH
Confidence 888888763 222211 11222222 2346788888888887643 33322211 1223455677888888
Q ss_pred hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 441 LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
.+|+++.++..++.+|...|++++|.+.|++..+.+-
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999987653
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=6.5e-18 Score=158.13 Aligned_cols=274 Identities=12% Similarity=-0.038 Sum_probs=185.7
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
.+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668888888888888888888888887753 3456678888888888888888888888888775 55677888888
Q ss_pred HHHHhcCChHHHHHHHHhcccCCch---hHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHH
Q 042265 154 HVYCVFHRLRDAQELFDEILYRDVV---SCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQL 230 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 230 (490)
.+|...|++++|...++++.+.++. .+..+. .....+..+...+...|++++|.+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------------------CCHHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888888888888888877543221 111110 0123344556667777777777777
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---
Q 042265 231 FCNMMDLDIK-PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--- 306 (490)
Q Consensus 231 ~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 306 (490)
|+++.+.... ++...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7777765321 146677777777777777777777777777765 55667777777777778888888777776553
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK-----------PDGVTILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
.+..++..+..+|...|++++|...|+++.+.... .+...+..+..++...|+.+.+.....+-.
T Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 34567777778888888888888888877653211 125677888888888888888887776543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.9e-17 Score=149.04 Aligned_cols=246 Identities=9% Similarity=-0.000 Sum_probs=202.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDN--IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
++-....|+++.|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999999876543 3443 3556778999999999999986654 23667788889999999999
Q ss_pred CHHHHHHHHhccC----CC-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 293 YINTAIEIFESSQ----EK-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 293 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
+.++|.+.++++. .| ++..+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 456677788999999999999999987 457788999999999999999999999
Q ss_pred HHhHHhhCCCCCchHH---HHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 368 DEMESVYGVSKELKHY---GCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
+++.+. . |+.... ..++..+...|++++|..+|+++.. .| ++..++.++.++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~-~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ-D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH-C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh-C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999985 2 443211 2233444556999999999998752 33 88999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHH-HHHHHHHHhcC
Q 042265 443 PEDGGVYKVLADVYANADRWED-VVKIRRSLDAG 475 (490)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 475 (490)
|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888887654
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.5e-16 Score=151.76 Aligned_cols=367 Identities=10% Similarity=-0.036 Sum_probs=224.9
Q ss_pred CCCChhHHHHhhccCC------------CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhC----CC--CC-CcccHHHH
Q 042265 57 TTDPLSYALSIFNNIP------------YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTV----SI--PP-DFYSFPFL 117 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p-~~~~~~~l 117 (490)
..|+.++|++.|++.. +....+|+.+..+|...|++++|...+++..+. .- .+ ...++...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 5799999999997531 234568999999999999999999999987642 11 11 12345544
Q ss_pred HHHHhc--cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHh
Q 042265 118 LRACSQ--LCSHSLAQTIHSQVLKLGFICDVFVLNSLMHV---YCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVK 189 (490)
Q Consensus 118 l~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 189 (490)
..++.. .+++++|...|++.++.. |.++..+..+..+ +...++.++|++.+++..+ | +...+..+...+..
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 444444 457999999999999976 5566666666555 4456788889999888743 3 44566666555544
Q ss_pred ----cCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 042265 190 ----AGDLAHARQLFDRMP---FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQG 262 (490)
Q Consensus 190 ----~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 262 (490)
.+++++|.+.+++.. ..+..++..+...|...|++++|...+++..+.. +-+...+..+..++...+....
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~- 299 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVM- 299 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhh-
Confidence 467889999998754 3467789999999999999999999999998853 3345566666665532211110
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC---CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 042265 263 KNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ---EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR 339 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 339 (490)
... .. .........+..+.|...+++.. ..+...+..+...+...|++++|+..|++.....
T Consensus 300 --------~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 300 --------NLR-EN------GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp --------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred --------hHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 000 00 00111112233566777776654 3466788889999999999999999999988864
Q ss_pred CCCCHH--HHHHHHH-HhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC-CCCC-CHHH
Q 042265 340 IKPDGV--TILGALV-GCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM-PMGG-DVFV 414 (490)
Q Consensus 340 ~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 414 (490)
..|... .+..+.. .....|+.++|+..|++..+. .|+....... ...+.+++++. ...| ++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHH
Confidence 433321 1222222 234678999999999998863 3443222211 22333444332 2234 7789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 415 WSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 415 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
|..++..+...|++++|++.|+++++..|.+|.+...+|
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999999888887766554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=1.6e-16 Score=146.10 Aligned_cols=240 Identities=13% Similarity=-0.006 Sum_probs=131.6
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
+...|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45566777777788888888888888877653 3355567777777777788888888888877764 556677777777
Q ss_pred HHHhcCChHHHHHHHHhcccCCc---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHH-HH-HHHhcCChhHHHH
Q 042265 155 VYCVFHRLRDAQELFDEILYRDV---VSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTL-VA-GYAQSDQCEEAIQ 229 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~ 229 (490)
++...|++++|.+.++++...++ ..+..+.... ++......+ .. .+...|++++|.+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 77777777777777777643321 1111110000 000011111 11 2455566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---
Q 042265 230 LFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--- 306 (490)
Q Consensus 230 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 306 (490)
.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 666666543 2345556666666666666666666666665543 33344444444444444444444444443321
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHHH
Q 042265 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMI 336 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 336 (490)
.+...+..+...+...|++++|.+.++++.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 122333344444444444444444444433
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-15 Score=135.05 Aligned_cols=227 Identities=11% Similarity=-0.018 Sum_probs=140.8
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CChhhHHHHHH
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR--VDSFLSTGLVD 286 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 286 (490)
..|..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++.+.+.... ++.. .
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~--- 77 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK---V--- 77 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH---H---
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH---H---
Confidence 345666666677777777777777666654 55566666666666666666666666666554210 0100 0
Q ss_pred HHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
....+..+...+...|++++|...+++.... .|+. ..+...|++++|...
T Consensus 78 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 78 ---------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHH
Confidence 0234445555555566666666666665553 2332 234445666667766
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
++++.. ..+.+...+..+...+...|++++|...+++.. ..| +...+..++..+...|++++|+..++++++..|+
T Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 128 AEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 666665 333445566666666777777777777776643 122 5667777777777777777777777777777777
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 445 DGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++.++..++.++.+.|++++|...+++..+.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7777777777777777777777777776543
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=6.2e-16 Score=136.81 Aligned_cols=235 Identities=12% Similarity=0.015 Sum_probs=171.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HHHHHH
Q 042265 177 VVSCNTLIDGYVKAGDLAHARQLFDRMPF--RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI--KPD----NIALVS 248 (490)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~ 248 (490)
...+..+...+...|++++|.+.|++... .+..+|..+..++...|++++|.+.+++..+... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 35788889999999999999999987532 6778899999999999999999999999887431 122 467788
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHH
Q 042265 249 ALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLS 328 (490)
Q Consensus 249 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 328 (490)
+..++...|++++|...++++.+.. |+. .. +...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~-------------------------------~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DI-------------------------------LTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HH-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HH-------------------------------HHHHhHHHHH
Confidence 8888888999999999888888764 221 12 3334455556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-
Q 042265 329 LVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP- 407 (490)
Q Consensus 329 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 407 (490)
...++++.... +.+...+..+...+...|++++|...++++.+ ..+.+...+..+...+...|++++|...+++..
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666555532 11334556666666777777777777777766 334456667777777777777777777777643
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCCchHHHHHH
Q 042265 408 MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK------PEDGGVYKVLAD 454 (490)
Q Consensus 408 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 454 (490)
..| +...+..+...+...|++++|...++++++.. |++..++..+..
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 223 67788888888999999999999999999877 776666655544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=6.3e-16 Score=132.96 Aligned_cols=195 Identities=12% Similarity=-0.011 Sum_probs=143.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGAL 351 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 351 (490)
|++...+..+...+.+.|++++|...|++..+ .++..+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45556666666677777777777777766543 244566677777777778888888887777653 22456677777
Q ss_pred HHhhcc-----------CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 042265 352 VGCSHA-----------GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP--MGGDVFVWSGL 418 (490)
Q Consensus 352 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 418 (490)
..+... |++++|...+++..+ ..+.+...+..+..+|...|++++|+..|++.. . .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 777777 999999999999988 345567788889999999999999999998753 3 688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 419 LGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
...+...|++++|+..++++++..|+++.++..++.++.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998764
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=3.7e-16 Score=150.00 Aligned_cols=373 Identities=9% Similarity=-0.033 Sum_probs=212.4
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCc---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSH---SLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|...|+...+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666777777777777776654 333444455555555666 6777777776643 44555555554444
Q ss_pred cC-----ChHHHHHHHHhcccC-CchhHHHHHHHHHhcCCHHHH---HHHHhhCC-CCCeehHHHHHHHHHhcCChhHHH
Q 042265 159 FH-----RLRDAQELFDEILYR-DVVSCNTLIDGYVKAGDLAHA---RQLFDRMP-FRDAVSWGTLVAGYAQSDQCEEAI 228 (490)
Q Consensus 159 ~g-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 228 (490)
.+ ++++|...|++..++ +...+..+...|...+..+++ .+.+.... ..+...+..+...|...+.++++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 44 566777777776554 445666666666655543332 23332222 124566667777777777555444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCHHHHHHHH
Q 042265 229 QLFCNMMDLDIKPDNIALVSALSACARLG---ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC----GYINTAIEIF 301 (490)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~ 301 (490)
.....+.+.-...+...+..+...|...| +.++|...|+...+.| +++...+..+..+|... +++++|...|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 44222222111122226666777777777 7777777777777776 55555556666666554 6777888887
Q ss_pred hccCCCCeehHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-----cHHHHHHHHHHhHHh
Q 042265 302 ESSQEKNLFTWNAMLVG-L--AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG-----LVDEARKLFDEMESV 373 (490)
Q Consensus 302 ~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~ 373 (490)
++....++..+..+... + ...+++++|...|++..+.| +......+...|. .| ++++|..+|++..
T Consensus 241 ~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-- 314 (452)
T 3e4b_A 241 EKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-- 314 (452)
T ss_dssp HHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--
T ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--
Confidence 77663355666666665 3 35678888888888877765 4555556666555 44 7888888887776
Q ss_pred hCCCCCchHHHHHHhhhhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC
Q 042265 374 YGVSKELKHYGCMADLLGR----AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~ 445 (490)
+.++.....|...|.. ..++++|.++|++....+++.....+...|.. ..+.++|..+++++.+..+..
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 2345566666666655 34788888888877666677777777777663 457888888888887755433
Q ss_pred CchHHHHHHHH--HhcCChHHHHHHHHHHh
Q 042265 446 GGVYKVLADVY--ANADRWEDVVKIRRSLD 473 (490)
Q Consensus 446 ~~~~~~l~~~~--~~~g~~~~A~~~~~~m~ 473 (490)
....+.... ...++..+|..+.++-.
T Consensus 392 --a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 392 --ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp --HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333333332 23345666666665544
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=2.3e-15 Score=134.57 Aligned_cols=241 Identities=11% Similarity=-0.063 Sum_probs=188.7
Q ss_pred hcCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042265 220 QSDQCEEAIQLFCNMMDLDIK---PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINT 296 (490)
Q Consensus 220 ~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 296 (490)
..|++++|++.|+++.+.... .+...+..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875321 134567788888888899999999888888875 5677888888888999999999
Q ss_pred HHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 297 AIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 297 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
|...|+++.+ .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998887664 35678888999999999999999999999885 455444444555567789999999999888873
Q ss_pred hCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 374 YGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
.+++...+. ++..+...++.++|...+++..... +...+..++..+...|++++|...++++++..|++..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 445555544 7777788888999999998866443 2578889999999999999999999999999998754
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 042265 448 VYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
. .+.++...|++++|.+.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 366788899999998876
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=2.9e-15 Score=143.80 Aligned_cols=344 Identities=12% Similarity=-0.006 Sum_probs=238.1
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHHhcccCCchhHHHHHHHHHhcC-
Q 042265 116 FLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL---RDAQELFDEILYRDVVSCNTLIDGYVKAG- 191 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~- 191 (490)
.+...+.+.|++++|.++|+...+.| +...+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35566778899999999999999887 334455566667778888 99999999998777778888888666655
Q ss_pred ----CHHHHHHHHhhCCCC-CeehHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 042265 192 ----DLAHARQLFDRMPFR-DAVSWGTLVAGYAQSDQCEE---AIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGK 263 (490)
Q Consensus 192 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 263 (490)
++++|.+.|++...+ +...+..|...|...+..++ +.+.+......|. ......+...|...+.++++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 789999999887655 66788899999988766444 4555555555442 345566777777777555544
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHhccCCC-Cee--hHHHHHHHHHHc----CChHHHHHHHH
Q 042265 264 NIHRYIELNQIRVDSFLSTGLVDFYAKCG---YINTAIEIFESSQEK-NLF--TWNAMLVGLAMH----GLGRLSLVYFS 333 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~-~~~--~~~~l~~~~~~~----~~~~~A~~~~~ 333 (490)
.....+.+.-...++..+..|..+|.+.| +.++|.+.|++..+. +.. .+..+...|... +++++|...|+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 44333333322344458888999999999 999999999887643 223 336677777554 79999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-h--hccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcC-----CHHHHHHHHhh
Q 042265 334 RMIEARIKPDGVTILGALVG-C--SHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAG-----LIEEALEMIKK 405 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~ 405 (490)
+.. .| +...+..+... + ...+++++|...|++..+. + +...+..|...|. .| ++++|.++|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 987 33 44555555555 3 5689999999999999885 4 6667777888887 55 99999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHhcCCC
Q 042265 406 MPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN----ADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 406 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 477 (490)
.. .+++.....+...|.. ..++++|..+++++.+. .++.+...|+.+|.. ..+.++|..++++..+.|.
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88 7799999999988876 44999999999999874 445689999999985 4589999999999888774
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=3.7e-15 Score=133.10 Aligned_cols=254 Identities=9% Similarity=-0.002 Sum_probs=142.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 042265 179 SCNTLIDGYVKAGDLAHARQLFDRMP---FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD--NIALVSALSAC 253 (490)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~ 253 (490)
.+......+...|++++|++.|++.. ..+...+..+..++...|++++|++.+++..+....|+ ...|..+..++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34455566666777777777766643 22445666666677777777777777776666321111 22356666666
Q ss_pred HccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHH
Q 042265 254 ARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 254 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
...|++++|...++++.+.. +.+..++..+..+|...|++++|...|++..+. +...|..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777766666654 445556666666666666666666666665542 23344444422233345555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCc---HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 331 YFSRMIEARIKPDGVTILGALVGCSHAGL---VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 331 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
.++++.+.. +.+...+..+...+...|+ +++|...++++.+.....|+.. -..
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~---------------------- 219 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDE---------------------- 219 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHH----------------------
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHH----------------------
Confidence 555555432 1123333334444444444 4444444444433211111110 000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 408 MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
....+..+...|...|++++|.+.++++++.+|+++.+...+.......+
T Consensus 220 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 220 ---LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 12467778888999999999999999999999999988877776655443
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=9.3e-17 Score=159.58 Aligned_cols=147 Identities=11% Similarity=0.122 Sum_probs=119.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 042265 177 VVSCNTLIDGYVKAGDLAHARQLFDRMP-------FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSA 249 (490)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 249 (490)
..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3489999999999999999999986643 679999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC-----CeehHHHHHHHHHHcC
Q 042265 250 LSACARLGEL-EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK-----NLFTWNAMLVGLAMHG 323 (490)
Q Consensus 250 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 323 (490)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++......+ .+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 788999999999999999999999998777665444444443333321 1334444555555444
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=2.2e-17 Score=164.01 Aligned_cols=125 Identities=12% Similarity=0.096 Sum_probs=110.9
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC-------CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP-------YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTV 105 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 105 (490)
....+||+||..|+ +.|++++|.++|++|. .||+.+||+||++|++.|++++|.++|++|.+.
T Consensus 125 ~~~~TynaLIdglc----------K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 125 GQQQRLLAFFKCCL----------LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp HHHHHHHHHHHHHH----------HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 45568999999999 9999999999997652 699999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHhccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 042265 106 SIPPDFYSFPFLLRACSQLCSH-SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQE 167 (490)
Q Consensus 106 ~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 167 (490)
|+.||..||+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.+
T Consensus 195 G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred CCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 9999999999999999999985 7899999999999999999999999877666543333333
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=6.6e-14 Score=125.06 Aligned_cols=224 Identities=13% Similarity=-0.045 Sum_probs=121.1
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCChhhHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACAR----LGELEQGKNIHRYIELNQIRVDSFLST 282 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (490)
++.++..+...+...|++++|.+.|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556677777777777888888887777763 244566666677777 777777777777777664 455555
Q ss_pred HHHHHHHh----cCCHHHHHHHHhccCCC-CeehHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042265 283 GLVDFYAK----CGYINTAIEIFESSQEK-NLFTWNAMLVGLAM----HGLGRLSLVYFSRMIEARIKPDGVTILGALVG 353 (490)
Q Consensus 283 ~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 353 (490)
.+...|.. .+++++|...|++..+. +...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 56666666555544332 33444455555555 555555555555555443 23334444444
Q ss_pred hhc----cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-
Q 042265 354 CSH----AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR----AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI- 424 (490)
Q Consensus 354 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 424 (490)
+.. .+++++|...|++..+. .+...+..+...|.. .+++++|...+++....++...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 444 45555555555554442 122333444444444 44444444444443333334444444444444
Q ss_pred ---cCCHHHHHHHHHHHHhhCC
Q 042265 425 ---HGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 425 ---~~~~~~a~~~~~~~~~~~p 443 (490)
.+++++|++.++++.+..|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 4444444444444444444
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=1.4e-14 Score=134.83 Aligned_cols=246 Identities=12% Similarity=0.069 Sum_probs=200.2
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGE-LEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
...|..+..++.+.|++++|++.++++++.. +-+...|..+..++...|+ +++|+..++++.+.. +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567788888888999999999999888754 3356678888888888886 999999999998886 667888888899
Q ss_pred HHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCcHHH
Q 042265 287 FYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH-AGLVDE 362 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~ 362 (490)
++...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.... +...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999988764 36678888999999999999999999999886432 66788888888888 565466
Q ss_pred H-----HHHHHHhHHhhCCCCCchHHHHHHhhhhhcC--CHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC--------
Q 042265 363 A-----RKLFDEMESVYGVSKELKHYGCMADLLGRAG--LIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHG-------- 426 (490)
Q Consensus 363 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~-------- 426 (490)
| ...++++.. -.+.+...|..+..++...| ++++|++.++++...| +...+..++..|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 588888887 34556778888888888888 6899999988874444 7788888999988764
Q ss_pred -CHHHHHHHHHHH-HhhCCCCCchHHHHHHHHHh
Q 042265 427 -NVEIAEAAAEHV-MKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 427 -~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 458 (490)
..++|+.+++++ .+.+|.....|..++..+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999999888888877654
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=2e-14 Score=123.46 Aligned_cols=194 Identities=14% Similarity=0.028 Sum_probs=120.8
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
+...+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|...+++..+.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 55667777777888888888888888877653 3356677777777788888888888888877775 556667777777
Q ss_pred HHHhc-----------CCHHHHHHHHhccCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042265 287 FYAKC-----------GYINTAIEIFESSQE--K-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALV 352 (490)
Q Consensus 287 ~~~~~-----------~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 352 (490)
++... |++++|+..|++..+ | +...+..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 77776 666666666665542 2 34456666666666666666666666666654 45566666666
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM 406 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (490)
++...|++++|...|+++.+ ..+.+...+..+...+...|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666665 23444555666666666666666666666554
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=7.8e-14 Score=124.61 Aligned_cols=223 Identities=12% Similarity=-0.044 Sum_probs=188.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHhccCCC-CeehHHHHH
Q 042265 242 DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK----CGYINTAIEIFESSQEK-NLFTWNAML 316 (490)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~ 316 (490)
+...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+. ++..+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567778888888999999999999998883 355677888888999 99999999999887643 667888888
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 317 VGLAM----HGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH----AGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 317 ~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 88888 999999999999998875 66778888888888 89999999999999884 3 5566777888
Q ss_pred hhhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh--
Q 042265 389 LLGR----AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN-- 458 (490)
Q Consensus 389 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 458 (490)
.|.. .+++++|...+++....+++..+..+...|.. .+++++|+..++++.+..| +..+..++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8887 89999999999887666688888889999988 9999999999999998766 5578899999998
Q ss_pred --cCChHHHHHHHHHHhcCC
Q 042265 459 --ADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 459 --~g~~~~A~~~~~~m~~~~ 476 (490)
.+++++|.+.+++..+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 899999999999887665
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=9.1e-14 Score=122.47 Aligned_cols=206 Identities=13% Similarity=0.009 Sum_probs=114.8
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~-------- 106 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNAR-------- 106 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH--------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHH--------
Confidence 3445555555666666666666666555432 2234455555555555555555555555555442 22233
Q ss_pred HHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
.+..+...+...|++++|.+.++++...+..| +...+..+...+...|++++|...
T Consensus 107 -----------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 107 -----------------------VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -----------------------HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33344444445555555555555554422223 334455555666666666666666
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
++++.+. .+.+...+..+...+...|++++|...++++.. .| +...+..+...+...|++++|.+.++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6666652 233455556666666666666666666665432 22 5556666666677777777777777777777776
Q ss_pred CCch
Q 042265 445 DGGV 448 (490)
Q Consensus 445 ~~~~ 448 (490)
++..
T Consensus 242 ~~~~ 245 (252)
T 2ho1_A 242 SLEY 245 (252)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6533
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=7.5e-14 Score=124.53 Aligned_cols=224 Identities=8% Similarity=-0.057 Sum_probs=147.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CCe----ehHHHHHHHHHHc
Q 042265 249 ALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--KNL----FTWNAMLVGLAMH 322 (490)
Q Consensus 249 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~ 322 (490)
....+...|++++|...++++.+.. +.+...+..+..+|...|++++|...++++.+ ++. ..|..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444455555555555544443 23334455555555555555555555544432 111 1356666677777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEM 402 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (490)
|++++|+..+++..+... .+...+..+...+...|++++|...+++..+ ..+.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766432 2456777777788888888888888888776 3444556666666233344588888888
Q ss_pred HhhCC-CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC-----CchHHHHHHHHHhcCChHHHHHHH
Q 042265 403 IKKMP-MGG-DVFVWSGLLGGCRIHGN---VEIAEAAAEHVMKLK---PED-----GGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 403 ~~~~~-~~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
|+++. ..| +...+..+...+...|+ +++|+..++++++.. |+. ..++..++..|...|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87754 223 57777778888888887 888999999998844 432 147888999999999999999999
Q ss_pred HHHhcCC
Q 042265 470 RSLDAGK 476 (490)
Q Consensus 470 ~~m~~~~ 476 (490)
++..+..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987654
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=7.3e-15 Score=139.70 Aligned_cols=260 Identities=11% Similarity=-0.003 Sum_probs=143.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCCChhhHHHH
Q 042265 214 LVAGYAQSDQCEEAIQLFCNMMDLDIKPDN----IALVSALSACARLGELEQGKNIHRYIELN----Q-IRVDSFLSTGL 284 (490)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 284 (490)
+...+...|++++|...|+++.+.+. .+. ..+..+..++...|++++|...++++.+. + .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 34444445555555555555444321 111 23444444444555555555554444332 0 01123344445
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC---------CeehHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHC
Q 042265 285 VDFYAKCGYINTAIEIFESSQEK---------NLFTWNAMLVGLAMHGL-----------------GRLSLVYFSRMIEA 338 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~~ 338 (490)
...|...|++++|...+++..+. ...++..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555443320 12244555555555666 66666665554331
Q ss_pred ----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCCC-
Q 042265 339 ----RIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMPM- 408 (490)
Q Consensus 339 ----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 408 (490)
+-.| ...++..+...+...|++++|...+++..+.....++ ...+..+...|...|++++|.+.+++...
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 1235566666677777777777777776653111111 12566677777777887777777765431
Q ss_pred ---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 409 ---GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED------GGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 409 ---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.+ ...++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|.+.+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 24567777777888888888888888887743332 23677788888888888888888877643
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=1.2e-14 Score=127.25 Aligned_cols=213 Identities=11% Similarity=0.053 Sum_probs=119.4
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~----------- 89 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SS----------- 89 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cc-----------
Confidence 3445555555566666666666666555532 2234455555555555555555555555554442 22
Q ss_pred HHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 90 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 90 --------------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 23344445555556666666666666665542 224556666666777777777777777
Q ss_pred HHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 368 DEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-G-GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
+++.+. .+.+...+..+...+...|++++|.+.++++.. . .+..++..+...+...|++++|...++++++..|++
T Consensus 149 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 777662 344556666677777777777777777766431 2 256777777888888888888888888888888887
Q ss_pred CchHHHHHHHH
Q 042265 446 GGVYKVLADVY 456 (490)
Q Consensus 446 ~~~~~~l~~~~ 456 (490)
+.++..+....
T Consensus 227 ~~~~~~~~~l~ 237 (243)
T 2q7f_A 227 MLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHHH
Confidence 76666555443
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=3.9e-13 Score=115.92 Aligned_cols=134 Identities=14% Similarity=-0.005 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 311 TWNAMLVGLAMH-GLGRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 311 ~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
.+..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 155 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHH
Confidence 334444444444 555555555555544211222 334444555555555555555555555542 2223344444444
Q ss_pred hhhhcCCHHHHHHHHhhCCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 389 LLGRAGLIEEALEMIKKMPM--G-GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.+...|++++|.+.++++.. . .+...+..+...+...|+.+.|..+++.+.+..|+++
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 44455555555544444321 1 2344444444445555555555555555555555554
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=2.5e-13 Score=119.61 Aligned_cols=195 Identities=11% Similarity=-0.019 Sum_probs=152.1
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 042265 76 TFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHV 155 (490)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 155 (490)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678889999999999999999999998763 3456678888899999999999999999999875 5678888889999
Q ss_pred HHhcCChHHHHHHHHhccc--C---CchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChhHH
Q 042265 156 YCVFHRLRDAQELFDEILY--R---DVVSCNTLIDGYVKAGDLAHARQLFDRMP---FRDAVSWGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 227 (490)
+...|++++|.+.++++.. . +...+..+...+.+.|++++|.+.|+++. ..+...+..+...+...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998866 2 33466677777777788888877777653 22456677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 042265 228 IQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQ 273 (490)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 273 (490)
...++++.+.. +.+...+..+...+...|+.++|..+++.+.+..
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777776643 3455566667777777777777777777777654
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=2.4e-14 Score=135.69 Aligned_cols=267 Identities=12% Similarity=0.032 Sum_probs=128.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----eehHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHH
Q 042265 179 SCNTLIDGYVKAGDLAHARQLFDRMPF--R-D----AVSWGTLVAGYAQSDQCEEAIQLFCNMMDL----DIKPD-NIAL 246 (490)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~ 246 (490)
.+......+...|++++|...|+++.. | + ..++..+...+...|++++|...+++.... +-.|. ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344455556666666666666655431 1 2 234555666666666666666666654332 11111 2344
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCC--------------------HHHHHHHH
Q 042265 247 VSALSACARLGELEQGKNIHRYIELNQIR-V----DSFLSTGLVDFYAKCGY--------------------INTAIEIF 301 (490)
Q Consensus 247 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 301 (490)
..+...+...|++++|...++++.+.... + ...++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 55555666666666666666655543100 0 12345555555555565 55555555
Q ss_pred hccCC-----C----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCcHHHHHHHH
Q 042265 302 ESSQE-----K----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPD----GVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 302 ~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
++..+ . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44321 0 112344445555555555555555555544210 111 113444444555555555555555
Q ss_pred HHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042265 368 DEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMPM----GG----DVFVWSGLLGGCRIHGNVEIAEAAA 435 (490)
Q Consensus 368 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 435 (490)
++..+.....++ ..++..+...|...|++++|.+.+++... .+ ...++..+...+...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 554432110111 23344455555555555555555544321 11 1334444555555555555555555
Q ss_pred HHHHhhCCCC
Q 042265 436 EHVMKLKPED 445 (490)
Q Consensus 436 ~~~~~~~p~~ 445 (490)
++++++.+..
T Consensus 331 ~~al~~~~~~ 340 (406)
T 3sf4_A 331 EKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=3.7e-14 Score=126.72 Aligned_cols=241 Identities=13% Similarity=-0.043 Sum_probs=126.7
Q ss_pred CCchhHHHHHHHhhhCCCC---CCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 042265 90 SSPLNAVVLFSQMRTVSIP---PDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQ 166 (490)
Q Consensus 90 g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 166 (490)
|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555443210 122334444445555555555555555555543 334444555555555555555555
Q ss_pred HHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 042265 167 ELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL 246 (490)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 246 (490)
..|+++...+ ..+..++..+...+...|++++|.+.|+++.+. .|+....
T Consensus 98 ~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 147 (275)
T 1xnf_A 98 EAFDSVLELD----------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFR 147 (275)
T ss_dssp HHHHHHHHHC----------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHhcC----------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHH
Confidence 5444442211 123445556666666666666666666666653 2333333
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCC-------eehHHHHHHHH
Q 042265 247 VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKN-------LFTWNAMLVGL 319 (490)
Q Consensus 247 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~ 319 (490)
...+..+...|++++|...++...... +++...+ .++..+...++.++|...+++..+.+ ...+..+...+
T Consensus 148 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 148 SLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 334444455566677776666665543 3333333 35555666666667777776665432 35666777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 320 AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 320 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
...|++++|...|++..... |+. +.....++...|++++|.+.+
T Consensus 226 ~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77788888888877777643 322 122234455667777776665
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=6.7e-14 Score=130.21 Aligned_cols=228 Identities=10% Similarity=0.017 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHhccCC---CCeehHHHHHHH
Q 042265 243 NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY-INTAIEIFESSQE---KNLFTWNAMLVG 318 (490)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~ 318 (490)
...|..+..++...|++++|+..++++++.. +.+..+|..+..++...|+ +++|+..|+++.+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467778888899999999999999999987 6778899999999999997 9999999998774 366789999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh-cCCHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR-AGLIE 397 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 397 (490)
+...|++++|+..|+++++... -+...|..+..++...|++++|+..++++.+ ..+.+...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998643 2678899999999999999999999999998 456678889999999998 66657
Q ss_pred HH-----HHHHhhCC-CCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC--------
Q 042265 398 EA-----LEMIKKMP-MGG-DVFVWSGLLGGCRIHG--NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD-------- 460 (490)
Q Consensus 398 ~A-----~~~~~~~~-~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 460 (490)
+| ++.+++.. ..| +...|..+...+...| ++++|++.++++ +..|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 47776643 344 8889999999999888 689999999998 899999999999999999874
Q ss_pred -ChHHHHHHHHHH-hcC
Q 042265 461 -RWEDVVKIRRSL-DAG 475 (490)
Q Consensus 461 -~~~~A~~~~~~m-~~~ 475 (490)
.+++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358999999998 443
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=3.3e-14 Score=130.84 Aligned_cols=263 Identities=11% Similarity=0.020 Sum_probs=178.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCChhhHH
Q 042265 212 GTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD----NIALVSALSACARLGELEQGKNIHRYIELN----QI-RVDSFLST 282 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 282 (490)
......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +. +....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 344555666677777777776666642 112 245556666666677777777666665433 11 11244556
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----CC----eehHHHHHHHHHHcCC--------------------hHHHHHHHH
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQE-----KN----LFTWNAMLVGLAMHGL--------------------GRLSLVYFS 333 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 333 (490)
.+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666677777777777776665442 11 2256666777777777 777777777
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHh
Q 042265 334 RMIEA----RIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIK 404 (490)
Q Consensus 334 ~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (490)
+.... +..| ....+..+...+...|++++|...+++..+.....++ ...+..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65432 1111 2346677777888899999999999887753211111 2367788888999999999999887
Q ss_pred hCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChHHHHHHHH
Q 042265 405 KMPM----GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED------GGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 405 ~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
+... .+ ...++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 7531 12 25677888888999999999999999998854432 3378889999999999999999999
Q ss_pred HHhcC
Q 042265 471 SLDAG 475 (490)
Q Consensus 471 ~m~~~ 475 (490)
+..+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=5.2e-12 Score=125.35 Aligned_cols=416 Identities=7% Similarity=-0.021 Sum_probs=284.6
Q ss_pred HHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCC---c
Q 042265 19 IHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSS---P 92 (490)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~ 92 (490)
.++..+..+ . .|...|..++..+. +.++++.+..+|+++. +.+...|...+..-.+.|+ +
T Consensus 54 ~lE~~l~~n-p---~d~~~W~~yi~~~~----------~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~ 119 (679)
T 4e6h_A 54 KLNDMIEEQ-P---TDIFLYVKLLKHHV----------SLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDA 119 (679)
T ss_dssp HHHHHHHHC-T---TCHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCH
T ss_pred HHHHHHHHC-c---CCHHHHHHHHHHHH----------hcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchH
Confidence 455555655 2 79999999999999 8899999999999874 4567789999999999998 9
Q ss_pred hhHHHHHHHhhhCC-CCCCcccHHHHHHHHhccCCc--------HHHHHHHHHHHH-hCC-CC-chhHHHHHHHHHHh--
Q 042265 93 LNAVVLFSQMRTVS-IPPDFYSFPFLLRACSQLCSH--------SLAQTIHSQVLK-LGF-IC-DVFVLNSLMHVYCV-- 158 (490)
Q Consensus 93 ~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~li~~~~~-- 158 (490)
+.+..+|++..... .+|+...|...+....+.++. +.+.++|+..+. .|. .+ +...|...+.....
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 99999999998763 247888888877766555543 345577877665 455 44 45688888776543
Q ss_pred -------cCChHHHHHHHHhcccCCc----hhHHH---HHHHH----------HhcCCHHHHHHHHhh-------CCC--
Q 042265 159 -------FHRLRDAQELFDEILYRDV----VSCNT---LIDGY----------VKAGDLAHARQLFDR-------MPF-- 205 (490)
Q Consensus 159 -------~g~~~~A~~~~~~~~~~~~----~~~~~---l~~~~----------~~~~~~~~a~~~~~~-------~~~-- 205 (490)
.++++.+..+|++.+.... .+|.. +...+ -...+++.|...+.+ +..
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 3457889999998865311 22322 11111 011223334444432 111
Q ss_pred ------------C--C------eehHHHHHHHHHhcC-------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 042265 206 ------------R--D------AVSWGTLVAGYAQSD-------QCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGE 258 (490)
Q Consensus 206 ------------~--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 258 (490)
| + ...|...+.---..+ ..+.+..+|++++.. ++-....|...+..+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence 0 0 123444444333222 123456678887765 24466677777777788888
Q ss_pred hHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC-------------CC------------eehH
Q 042265 259 LEQGK-NIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-------------KN------------LFTW 312 (490)
Q Consensus 259 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~ 312 (490)
.++|. .+++...... |.+...+..++....+.|+++.|.++|+++.+ |+ ...|
T Consensus 359 ~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88896 9999998754 66677788888889999999999999987653 21 2357
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH-AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|+...+. .+.+...+...++...
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 77777777889999999999999875111123333332222223 35689999999999985 4455666778888888
Q ss_pred hcCCHHHHHHHHhhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 392 RAGLIEEALEMIKKMPMG-G----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
..|+.+.|..+|++.... + ....|...+..-.+.|+.+.+..+.+++.+..|+++ ....+.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~ 581 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFT 581 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHH
Confidence 889999999999986533 2 346788888888889999999999999999999876 333333
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=3e-14 Score=124.69 Aligned_cols=197 Identities=13% Similarity=0.083 Sum_probs=152.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042265 277 DSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVG 353 (490)
Q Consensus 277 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 353 (490)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566666677777777777766543 245667777888888899999999999888763 3367788888999
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHH
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a 431 (490)
+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.. .| +...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999984 456778888999999999999999999988642 23 788999999999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 432 EAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+..++++.+..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987653
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=1.9e-13 Score=114.17 Aligned_cols=165 Identities=12% Similarity=0.035 Sum_probs=135.2
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHH
Q 042265 308 NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMA 387 (490)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 387 (490)
++..|..+...+...|++++|++.|++..+... -+...+..+...+...|++++|...+..+.. ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 345677788888888888888888888877532 2566778888888888888888888888877 3455566777778
Q ss_pred hhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHH
Q 042265 388 DLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDV 465 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (490)
..+...++++.|...+++.. ..| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88888888988888887754 233 7888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 042265 466 VKIRRSLDAG 475 (490)
Q Consensus 466 ~~~~~~m~~~ 475 (490)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999988765
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=2.5e-13 Score=117.19 Aligned_cols=196 Identities=11% Similarity=-0.051 Sum_probs=156.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC 354 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 354 (490)
..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44455555555566666666665554432 234566777777888888888888888887753 33677888899999
Q ss_pred hcc-CcHHHHHHHHHHhHHhhCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 042265 355 SHA-GLVDEARKLFDEMESVYGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 355 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 430 (490)
... |++++|...++++.+. +..| +...+..+...+...|++++|...++++. ..| +...+..++..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 999 9999999999999873 3333 35778889999999999999999998864 233 78899999999999999999
Q ss_pred HHHHHHHHHhhCC-CCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 431 AEAAAEHVMKLKP-EDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 431 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999 88888988899999999999999999998754
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=1.3e-13 Score=133.21 Aligned_cols=212 Identities=8% Similarity=-0.029 Sum_probs=154.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 042265 224 CEEAIQLFCNMMDLDIKPDNIALVSALSACARLGEL-EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFE 302 (490)
Q Consensus 224 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 302 (490)
+++++..+++..... +.+...+..+..++...|++ ++|...++++.+.. +.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~-------------------------- 135 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PE-------------------------- 135 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TT--------------------------
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CC--------------------------
Confidence 455555555444322 23444555555555556666 66666655555543 22
Q ss_pred ccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc---------CcHHHHHHHHHHhHHh
Q 042265 303 SSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA---------GLVDEARKLFDEMESV 373 (490)
Q Consensus 303 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~ 373 (490)
+...|..+...|...|++++|...|++..+. .|+...+..+...+... |++++|...++++.+
T Consensus 136 -----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~- 207 (474)
T 4abn_A 136 -----LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ- 207 (474)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-
Confidence 3345555666666667777777777777664 45667777777777777 888888888888887
Q ss_pred hCCCCCchHHHHHHhhhhhc--------CCHHHHHHHHhhCCC-C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 374 YGVSKELKHYGCMADLLGRA--------GLIEEALEMIKKMPM-G----GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~-~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
-.+.+...+..+..+|... |++++|++.|++... . .+...|..+..+|...|++++|+..++++++
T Consensus 208 -~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 208 -MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455677788888888887 888888888887542 3 3888999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 441 LKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
.+|+++.++..++.++...|++++|.+.++++
T Consensus 287 l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 287 LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999765443
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=2.3e-13 Score=128.91 Aligned_cols=94 Identities=15% Similarity=0.006 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc-----ccHHHHHHHHhccCCcHHHHHHHHHHHHh----CCC-Cch
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF-----YSFPFLLRACSQLCSHSLAQTIHSQVLKL----GFI-CDV 146 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~ 146 (490)
..+......+...|++++|+..|++..+.+ |+. ..+..+...+...|+++.|...+++..+. +-+ ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455556666666666666666666542 221 34555555666666666666666655432 111 113
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc
Q 042265 147 FVLNSLMHVYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 147 ~~~~~li~~~~~~g~~~~A~~~~~~~ 172 (490)
.++..+...+...|++++|...+++.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~a 113 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRH 113 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555666666666555554
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.4e-13 Score=130.74 Aligned_cols=267 Identities=14% Similarity=0.052 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcccC--C-c----hhHHHHHHHHHhcCCHHHHHHHHhhCCCC---------Ceeh
Q 042265 147 FVLNSLMHVYCVFHRLRDAQELFDEILYR--D-V----VSCNTLIDGYVKAGDLAHARQLFDRMPFR---------DAVS 210 (490)
Q Consensus 147 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 210 (490)
..+..+...+...|++++|...|+++.+. + . ..+..+...+...|++++|...+++.... ...+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455666777788888888888776432 1 1 24555555555566666665555443210 1234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHH
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQ-IRVDSFLSTGLVDFYA 289 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 289 (490)
+..+...|...|++++|...+++..+... +.+ .+....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 44445555555555555555544433100 000 0112233444444555
Q ss_pred hcCC-----------------HHHHHHHHhccCC-------C--CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC
Q 042265 290 KCGY-----------------INTAIEIFESSQE-------K--NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KP 342 (490)
Q Consensus 290 ~~~~-----------------~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p 342 (490)
..|+ +++|.+.+++..+ + ....+..+...+...|++++|...+++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555544443321 0 123566666777777777777777777654210 01
Q ss_pred C----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC----CchHHHHHHhhhhhcCCHHHHHHHHhhCCCC----C
Q 042265 343 D----GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSK----ELKHYGCMADLLGRAGLIEEALEMIKKMPMG----G 410 (490)
Q Consensus 343 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 410 (490)
+ ...+..+...+...|++++|...+++..+...... ...++..+...|...|++++|...+++.... +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 23667777788888888888888888766321111 1456777888888999999998888775421 1
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 411 ----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 411 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
...++..+...+...|++++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 3457788888999999999999999999987653
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=8.9e-13 Score=123.99 Aligned_cols=227 Identities=11% Similarity=-0.055 Sum_probs=126.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC------CCChhhHH
Q 042265 214 LVAGYAQSDQCEEAIQLFCNMMDL----DIKP-DNIALVSALSACARLGELEQGKNIHRYIELNQI------RVDSFLST 282 (490)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 282 (490)
....+...|++++|...|++..+. +-.+ ...++..+..++...|++++|...+.+..+... +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566677777777777776553 1111 223566666677777777777777766655311 11123455
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----CC----eehHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQE-----KN----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEA----RI-KPDGVTIL 348 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~ 348 (490)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 566666666666666666655432 11 125556666666677777777766666551 22 22344566
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhh---CCCCCchHHHHHHhhhhhcCC---HHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 042265 349 GALVGCSHAGLVDEARKLFDEMESVY---GVSKELKHYGCMADLLGRAGL---IEEALEMIKKMPMGG-DVFVWSGLLGG 421 (490)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~ 421 (490)
.+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|+.++++....+ ....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 66666777777777777776665421 111112223445555556666 556666666554332 23344455555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 042265 422 CRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~ 440 (490)
|...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666555
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=3.6e-11 Score=119.38 Aligned_cols=401 Identities=9% Similarity=-0.004 Sum_probs=278.5
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC---cHHHHHHHHHHHHhC-CCCchhH
Q 042265 73 YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS---HSLAQTIHSQVLKLG-FICDVFV 148 (490)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~ 148 (490)
+-|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+..+|+..+... .+|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 468899999999999999999999999999986 35556678888888888888 999999999998864 1488999
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHHHhcc------cC-CchhHHHHHHHHH---------hcCCHHHHHHHHhhCC
Q 042265 149 LNSLMHVYCVFHRL--------RDAQELFDEIL------YR-DVVSCNTLIDGYV---------KAGDLAHARQLFDRMP 204 (490)
Q Consensus 149 ~~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 204 (490)
|...+....+.++. +...++|+..+ .+ +...|...+.... ..++++.+.++|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888877666554 33446777653 23 3457777776543 2345788899998866
Q ss_pred CCCe----ehH---HHHHHHH----------HhcCChhHHHHHHHHHHh--CCC----C-----------C-----C---
Q 042265 205 FRDA----VSW---GTLVAGY----------AQSDQCEEAIQLFCNMMD--LDI----K-----------P-----D--- 242 (490)
Q Consensus 205 ~~~~----~~~---~~l~~~~----------~~~g~~~~A~~~~~~m~~--~~~----~-----------p-----~--- 242 (490)
.-.. .+| ..+.... -...+++.|...+.++.. .++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 3211 122 1221111 011223444455544321 111 1 1 1
Q ss_pred HHHHHHHHHHHHccC-------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHhccCC--C-Ceeh
Q 042265 243 NIALVSALSACARLG-------ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAI-EIFESSQE--K-NLFT 311 (490)
Q Consensus 243 ~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~--~-~~~~ 311 (490)
...|...+..--..+ ..+.+..+|++++... +....+|...+..+...|+.++|. .+|++... | +...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 123333333222222 1234567788888764 668888999999899999999996 99987764 3 4456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHhhccCcHHHHHHHHHHh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEAR---------IKPD------------GVTILGALVGCSHAGLVDEARKLFDEM 370 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (490)
|-..+....+.|+++.|.++|+++.... -.|+ ...|...+....+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777888889999999999999987631 0132 235777777777889999999999999
Q ss_pred HHhhCCCCCchHHHHHHhhhhhc-CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---
Q 042265 371 ESVYGVSKELKHYGCMADLLGRA-GLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE--- 444 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--- 444 (490)
.+. ........|...+..-.+. ++.+.|.++|+... ..| +...|...+......|+.+.|..+|+++++..|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 873 1222344454444433344 45899999998754 223 7777888888888899999999999999997773
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 445 DGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44578888888889999999999999998764
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=1.5e-11 Score=111.74 Aligned_cols=219 Identities=9% Similarity=-0.023 Sum_probs=155.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042265 225 EEAIQLFCNMMDLDIKPDNIALVSALSACA-------RLGEL-------EQGKNIHRYIELNQIRVDSFLSTGLVDFYAK 290 (490)
Q Consensus 225 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 290 (490)
++|...|++++... +-+...|..++..+. ..|+. ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776642 334555655555554 34665 7778888877763114455677777777888
Q ss_pred cCCHHHHHHHHhccCC--C-Cee-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hccCcHHHHHH
Q 042265 291 CGYINTAIEIFESSQE--K-NLF-TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC-SHAGLVDEARK 365 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~ 365 (490)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888877654 2 233 677788888888888888888888887532 2344444333222 23688999999
Q ss_pred HHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042265 366 LFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM----GG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVM 439 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 439 (490)
+|++..+. .+.+...+..++..+.+.|++++|..+|++... .| ....|..++..+.+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988874 345677788888888888999999999887653 22 56788888888888999999999999999
Q ss_pred hhCCCCCc
Q 042265 440 KLKPEDGG 447 (490)
Q Consensus 440 ~~~p~~~~ 447 (490)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 98887653
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=124.38 Aligned_cols=165 Identities=17% Similarity=0.103 Sum_probs=107.7
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------C-
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDL-------DIKPDNIALVSALSACARLGELEQGKNIHRYIELN------Q- 273 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 273 (490)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456778888888889999999888888762 22234456778888888899999999888887764 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC-------C----CeehHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 042265 274 IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-------K----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA---- 338 (490)
Q Consensus 274 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---- 338 (490)
.+....++..+...|...|++++|...++++.+ + ....+..+...+...|++++|++.++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 123355667777777788888887777765442 1 1234555566666666666666666665543
Q ss_pred --CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 339 --RIKP-DGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 339 --~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
+..| ...++..+...+...|++++|...++++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 123455555566666666666666666654
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=2.1e-12 Score=118.69 Aligned_cols=275 Identities=13% Similarity=0.027 Sum_probs=139.9
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcC
Q 042265 116 FLLRACSQLCSHSLAQTIHSQVLKLGFICD----VFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAG 191 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (490)
.....+...|++++|...++++.+.. +.+ ...+..+...+...|++++|.+.+++.... ..+.+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------~~~~~ 77 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-----------ARTIG 77 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------hhccc
Confidence 34455666677777777777777654 223 345666677777777777777776664211 00000
Q ss_pred CHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------
Q 042265 192 DLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI-KPD----NIALVSALSACARLGE-------- 258 (490)
Q Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~-------- 258 (490)
+... ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 78 ~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (338)
T 3ro2_A 78 DQLG-----------EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146 (338)
T ss_dssp CHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC
T ss_pred ccHH-----------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhh
Confidence 0000 123344555556666666666666655443210 011 2244555555555565
Q ss_pred ------------hHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHH
Q 042265 259 ------------LEQGKNIHRYIELN----QI-RVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAM 321 (490)
Q Consensus 259 ------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 321 (490)
+++|...+++..+. +. +....++..+...+...|+++
T Consensus 147 ~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------------- 200 (338)
T 3ro2_A 147 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR-------------------------- 200 (338)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH--------------------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH--------------------------
Confidence 55555555444322 10 011123333344444444444
Q ss_pred cCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhh
Q 042265 322 HGLGRLSLVYFSRMIEA----RI-KPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGR 392 (490)
Q Consensus 322 ~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 392 (490)
+|...+++..+. +. .....++..+...+...|++++|...+++..+......+ ..++..+...+..
T Consensus 201 -----~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 201 -----DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 444444433321 00 001124455555555666666666666655442111111 3345556666666
Q ss_pred cCCHHHHHHHHhhCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 393 AGLIEEALEMIKKMPM----GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
.|++++|...+++... .+ ...++..+...+...|++++|...+++++++.+.
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6777666666655421 11 2446677778888888888888888888876553
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=1.9e-12 Score=107.91 Aligned_cols=167 Identities=10% Similarity=-0.015 Sum_probs=122.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042265 277 DSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVG 353 (490)
Q Consensus 277 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 353 (490)
++.+|..+...|.+.|++++|++.|++..+ .++.++..+...+...|++++|...+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 344555556666666666666666655442 2445666666777777777777777777766532 245566666677
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 431 (490)
+...++++.|...+.+..+ ..+.+...+..+...|.+.|++++|++.|++.. ..| +..++..++.++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7788888888888888877 445567778888888888899999988888754 234 788899999999999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 042265 432 EAAAEHVMKLKPEDG 446 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~ 446 (490)
++.++++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999988754
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=1.1e-10 Score=109.13 Aligned_cols=161 Identities=15% Similarity=0.041 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHH----
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIK--P--DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYG---- 384 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 384 (490)
..+...+...|++++|...+++....... + ...++..+...+...|++++|...+++.............+.
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 33444455555555555555554432111 0 123344444455555555555555555543211111111111
Q ss_pred -HHHhhhhhcCCHHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHH
Q 042265 385 -CMADLLGRAGLIEEALEMIKKMPMGG------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED------GGVYKV 451 (490)
Q Consensus 385 -~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~ 451 (490)
..+..+...|++++|...+++..... ....+..+...+...|++++|...++++.+..+.. ..++..
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 11222445555555555555543211 12233444555555556666665555555422110 123444
Q ss_pred HHHHHHhcCChHHHHHHHHHHh
Q 042265 452 LADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
++.++...|+.++|...+++..
T Consensus 299 la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555566655555555443
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=2.4e-12 Score=129.25 Aligned_cols=163 Identities=17% Similarity=0.105 Sum_probs=138.5
Q ss_pred eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 309 LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
..+|+.+...+.+.|++++|++.|++.++... -+...+..+..++.+.|++++|++.|+++.+. .+.+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45677788888888888888888888877532 24677888888888899999999999988873 4456778888999
Q ss_pred hhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 389 LLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
+|...|++++|++.|++.. ..| +...+..+...+...|++++|+..|+++++++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999999998754 334 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 042265 467 KIRRSLDA 474 (490)
Q Consensus 467 ~~~~~m~~ 474 (490)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888754
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=3.2e-11 Score=109.57 Aligned_cols=212 Identities=11% Similarity=0.018 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHHHhccCC---C-CeehHHHHHHHHHH
Q 042265 260 EQGKNIHRYIELNQIRVDSFLSTGLVDFYAK-------CGYI-------NTAIEIFESSQE---K-NLFTWNAMLVGLAM 321 (490)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 321 (490)
++|..+|+++.+.. +.++..|..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999988875 6778888888887763 5886 899999998765 3 45589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh-hcCCHHH
Q 042265 322 HGLGRLSLVYFSRMIEARIKPD-GV-TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG-RAGLIEE 398 (490)
Q Consensus 322 ~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 398 (490)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+++.+ ..+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 454 33 788888999999999999999999997 33455555554443322 3699999
Q ss_pred HHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 399 ALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL---KPE-DGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 399 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
|.++|++.. ..| +...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998864 223 7899999999999999999999999999995 443 5568888999999999999999999998
Q ss_pred hcCC
Q 042265 473 DAGK 476 (490)
Q Consensus 473 ~~~~ 476 (490)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7653
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=3.5e-11 Score=112.79 Aligned_cols=227 Identities=11% Similarity=-0.028 Sum_probs=131.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----C-CChhhH
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDI-KPD----NIALVSALSACARLGELEQGKNIHRYIELNQI-----R-VDSFLS 281 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 281 (490)
.....+...|++++|+..|++..+... .++ ...+..+..++...|+++.|...+.+..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344455667777777777776654311 112 23556666667777777777777766654310 0 113345
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC-----CC----eehHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 042265 282 TGLVDFYAKCGYINTAIEIFESSQE-----KN----LFTWNAMLVGLAMHGLGRLSLVYFSRMIE-----ARIKPDGVTI 347 (490)
Q Consensus 282 ~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~ 347 (490)
..+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 5666666666666666666655432 11 23455666666777777777777766655 32 1224566
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC---chHHHHHHhhhhhcCC---HHHHHHHHhhCCCCC-CHHHHHHHHH
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKE---LKHYGCMADLLGRAGL---IEEALEMIKKMPMGG-DVFVWSGLLG 420 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~ 420 (490)
..+...+.+.|++++|...+++..+......+ ...+..+...+...|+ +++|+..+++....+ ....+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 66677777777777777777777664221111 2234445555556666 666666666644332 2334455666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 042265 421 GCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~ 440 (490)
.|...|++++|...++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666654
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=6.9e-12 Score=117.90 Aligned_cols=230 Identities=8% Similarity=-0.072 Sum_probs=120.4
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcC
Q 042265 117 LLRACSQLCSHSLAQTIHSQVLKL----GFIC-DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAG 191 (490)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (490)
....+...|++++|...+++..+. +-++ ...++..+..++...|++++|...+++..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------- 171 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----------------- 171 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 334455667777777777766653 1111 234566666666667777766666655421
Q ss_pred CHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHHH
Q 042265 192 DLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL----DIKP-DNIALVSALSACARLGELEQGK 263 (490)
Q Consensus 192 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~ 263 (490)
++...... ...+++.+...|...|++++|.+.+++..+. +-.+ ...++..+..++...|++++|.
T Consensus 172 -------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 172 -------IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp -------HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 11111100 1234555555555556666665555554432 1000 1124555556666666666666
Q ss_pred HHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC-----CCe---ehHHHHHHHHHHcCC---hHH
Q 042265 264 NIHRYIELN----QI-RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-----KNL---FTWNAMLVGLAMHGL---GRL 327 (490)
Q Consensus 264 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~---~~~~~l~~~~~~~~~---~~~ 327 (490)
..+++..+. +. +....++..+..+|.+.|++++|...+++..+ .+. ..+..+...+...|+ .++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 666555542 22 33344555566666666666666666655432 111 123445555566666 555
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 328 SLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 328 A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
|+.++++. +..| ....+..+...|...|++++|...+++..+.
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555443 2222 2235556667777777777777777776653
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=8.2e-12 Score=120.50 Aligned_cols=210 Identities=12% Similarity=0.014 Sum_probs=120.5
Q ss_pred chhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 042265 92 PLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSH-SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFD 170 (490)
Q Consensus 92 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 170 (490)
+++++..++...... +.+...+..+...+...|++ ++|.+.|++.++.. +.+...+..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555544332 23445566666666777777 77777777776664 4456667777777777777777777777
Q ss_pred hccc--CCchhHHHHHHHHHhc---------CCHHHHHHHHhhCC---CCCeehHHHHHHHHHhc--------CChhHHH
Q 042265 171 EILY--RDVVSCNTLIDGYVKA---------GDLAHARQLFDRMP---FRDAVSWGTLVAGYAQS--------DQCEEAI 228 (490)
Q Consensus 171 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~--------g~~~~A~ 228 (490)
+..+ |+...+..+...+... |++++|++.|++.. ..+...|..+..+|... |++++|+
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 6633 3444555555555555 66666666665533 22445555566666555 5566666
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 229 QLFCNMMDLDIK--PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 229 ~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
+.|++..+.... -+...+..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+.++
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666665553210 244555555566666666666666666655554 334445555555555555555555554443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=1.6e-11 Score=102.14 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 042265 280 LSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH 356 (490)
Q Consensus 280 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 356 (490)
.+..+...+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------ 71 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD------------------ 71 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Confidence 4445555566666666666666655432 2334444444555555555555555554443
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP--MGGDVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.+.+...+..+...+...|++++|.+.++++. ...+...+..++..+...|++++|...
T Consensus 72 -------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 72 -------------------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp -------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 22233344444444445555555555544432 112555666667777777777777777
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 435 AEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++++.+..|.++.++..++.++...|++++|.+.+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777776544
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=2e-12 Score=117.55 Aligned_cols=254 Identities=12% Similarity=0.049 Sum_probs=148.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CC-CeehHHHHHHHHHh
Q 042265 145 DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP---FR-DAVSWGTLVAGYAQ 220 (490)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~-~~~~~~~l~~~~~~ 220 (490)
+..++..+...+...|++++|..+++++.+. +.... .+ ...++..+...|..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~~~~~la~~~~~ 81 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALED------------------------LEKTSGHDHPDVATMLNILALVYRD 81 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HHHHHCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------HHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666654320 00000 00 23456667777777
Q ss_pred cCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCChhhHHHHHH
Q 042265 221 SDQCEEAIQLFCNMMDL------DIKP-DNIALVSALSACARLGELEQGKNIHRYIELN------QI-RVDSFLSTGLVD 286 (490)
Q Consensus 221 ~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~ 286 (490)
.|++++|...+++..+. +-.| ....+..+...+...|++++|...++++.+. +. +....++..+..
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 77777777777776653 1122 3456778888888899999999888887764 21 234566788899
Q ss_pred HHHhcCCHHHHHHHHhccCC-------C----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 042265 287 FYAKCGYINTAIEIFESSQE-------K----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 355 (490)
.|...|++++|.+.++++.+ + ...++..+...+...|++++|...++++.+.. |+. .+..+-.
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~~--- 235 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVDD--- 235 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC-------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCCc---
Confidence 99999999999999887643 1 23467888899999999999999999987631 100 0000000
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHH
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
....... ....+..+...+...+.+.++...++..... | ...++..+...|...|++++|..
T Consensus 236 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 236 ENKPIWM----------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp --CCHHH----------------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred chHHHHH----------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0000000 0001111222233344445555555554432 2 55667777777888888888888
Q ss_pred HHHHHHhhCCC
Q 042265 434 AAEHVMKLKPE 444 (490)
Q Consensus 434 ~~~~~~~~~p~ 444 (490)
.+++++++.|.
T Consensus 300 ~~~~al~l~~~ 310 (311)
T 3nf1_A 300 LEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhc
Confidence 88888776653
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=2.7e-11 Score=104.74 Aligned_cols=190 Identities=13% Similarity=-0.041 Sum_probs=96.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhccCC----CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042265 277 DSFLSTGLVDFYAKCGYINTAIEIFESSQE----KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALV 352 (490)
Q Consensus 277 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 352 (490)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 345555555566666666666666654432 33444444555555666666666666655554211 3344555555
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCc-------hHHHHHHhhhhhcCCHHHHHHHHhhCCC-CCC---HHHHHHHHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKEL-------KHYGCMADLLGRAGLIEEALEMIKKMPM-GGD---VFVWSGLLGG 421 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~ 421 (490)
.+...|++++|...+++..+. .+.+. ..|..+...+...|++++|++.|++... .|+ ...+..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 555666666666666665552 22223 2344445555555555555555554332 222 2344444444
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+.. .+...++++..+.+.+...+.. ......+.+++|...+++..+..
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 432 2233344444444433322222 22233444599999999887653
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=8e-11 Score=101.77 Aligned_cols=206 Identities=11% Similarity=0.010 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHH
Q 042265 241 PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLV 317 (490)
Q Consensus 241 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~ 317 (490)
.|...+......+...|++++|...|++..+...+++...+..+..++...|++++|+..|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567888899999999999999999999999874478888888999999999999999999987643 4567888999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC--CchHHHHHHh
Q 042265 318 GLAMHGLGRLSLVYFSRMIEARIKPDG-------VTILGALVGCSHAGLVDEARKLFDEMESVYGVSK--ELKHYGCMAD 388 (490)
Q Consensus 318 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 388 (490)
.+...|++++|+..+++..+... .+. ..|..+...+...|++++|...|+++.+ ..+. +...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 99999999999999999988532 234 4577777888899999999999999987 3333 4667778888
Q ss_pred hhhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 389 LLGRAGLIEEALEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
+|...|+. .++++.. ..+...+.... ....+.+++|+..+++++++.|+++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88766543 2232221 11344443333 34456799999999999999999987777666543
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=2.7e-11 Score=113.61 Aligned_cols=303 Identities=10% Similarity=0.013 Sum_probs=156.2
Q ss_pred CchhHHHHHHHhh--ccCCcCCCCCCCCCChhHHHHhhccCCC--------CCcccHHHHHHH--HHcCCCchhHH----
Q 042265 33 PCHILTTILYAIT--TFKPISSASSPTTDPLSYALSIFNNIPY--------PSTFSYNTIIRA--HTLFSSPLNAV---- 96 (490)
Q Consensus 33 ~~~~~~~~l~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~---- 96 (490)
|+..+.+.|-.+| . +.+++++|.++++++.. ++...|-.++.. ..-.+.+..+.
T Consensus 8 ~~~~v~~~l~~wy~~i----------~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~ 77 (378)
T 3q15_A 8 PSSRVGVKINEWYKMI----------RQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGN 77 (378)
T ss_dssp CHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC------
T ss_pred cHHHHHHHHHHHHHHH----------HHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCccccccc
Confidence 7889999999999 6 89999999999876531 223333333332 11112222222
Q ss_pred -----HHHHHhhhCCCCCCc-c---cHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCCh
Q 042265 97 -----VLFSQMRTVSIPPDF-Y---SFPFLLRACSQLCSHSLAQTIHSQVLKLGF-IC----DVFVLNSLMHVYCVFHRL 162 (490)
Q Consensus 97 -----~~~~~m~~~~~~p~~-~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~ 162 (490)
+.++.+.....+.+. . .+......+...|++++|...+++..+... .+ ...++..+..+|...|++
T Consensus 78 ~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~ 157 (378)
T 3q15_A 78 RPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT 157 (378)
T ss_dssp --CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc
Confidence 444444322101010 0 112223344566777777777777665310 01 234556666667777777
Q ss_pred HHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhC--
Q 042265 163 RDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL-- 237 (490)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 237 (490)
+.|...+++..+ ++...... ...+++.+..+|...|++++|.+.|++..+.
T Consensus 158 ~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 213 (378)
T 3q15_A 158 HVSMYHILQALD------------------------IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213 (378)
T ss_dssp HHHHHHHHHHHH------------------------HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------------------HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 777666655421 11111110 1234455555556666666666555554431
Q ss_pred --CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC----
Q 042265 238 --DIKP-DNIALVSALSACARLGELEQGKNIHRYIELN----QIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---- 306 (490)
Q Consensus 238 --~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 306 (490)
+..+ ...++..+..++...|++++|...+++..+. +.+....++..+..+|.+.|++++|...+++..+
T Consensus 214 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 1111 1224555566666666666666666665541 2123345555666666666666666666654331
Q ss_pred -CCe---ehHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 307 -KNL---FTWNAMLVGLAMHGL---GRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 307 -~~~---~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.+. ..+..+...+...++ ..+|+..+++ .+..|+ ...+..+...|...|++++|...|++..+
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 123334444445555 5555555544 222222 23445566677777777777777777654
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=7.6e-11 Score=97.94 Aligned_cols=168 Identities=15% Similarity=0.062 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHH
Q 042265 243 NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGL 319 (490)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 319 (490)
...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+ .+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467778888999999999999999987764 56788899999999999999999999987653 3556677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHH
Q 042265 320 AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEA 399 (490)
Q Consensus 320 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (490)
...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+. .+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~---------------------- 141 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RP---------------------- 141 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--Cc----------------------
Confidence 77788888877777776642 234555566666666666666666666666552 11
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 400 LEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.+...+..++..+...|++++|...++++++..|++.
T Consensus 142 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 142 ----------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred ----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 1455566677777777888888888888877777665
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=2.4e-09 Score=100.04 Aligned_cols=267 Identities=12% Similarity=0.023 Sum_probs=156.5
Q ss_pred HHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc-----cHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCc----hhHHH
Q 042265 81 TIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY-----SFPFLLRACSQLCSHSLAQTIHSQVLKLGF-ICD----VFVLN 150 (490)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~ 150 (490)
.....+...|++++|...+++..... +++.. .+..+...+...|+++.|...+++..+... .++ ..++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34445667888888888888877653 22211 344555666777888888888877665310 111 12245
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CeehHHHHHHHHHhcCChhH
Q 042265 151 SLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR----DAVSWGTLVAGYAQSDQCEE 226 (490)
Q Consensus 151 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 226 (490)
.+...+...|++++|...+++... +......+ ....+..+...+...|++++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQ------------------------LINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH------------------------HHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 556666677777777766655421 11111111 12345566777778888888
Q ss_pred HHHHHHHHHhCCCC--C--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHH
Q 042265 227 AIQLFCNMMDLDIK--P--DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDS-FLST-----GLVDFYAKCGYINT 296 (490)
Q Consensus 227 A~~~~~~m~~~~~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~ 296 (490)
|...+++..+.... + ....+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 88888776653211 1 2345667777788888888888888877654212111 1111 23344667888888
Q ss_pred HHHHHhccCCCCe-------ehHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCcHHHHH
Q 042265 297 AIEIFESSQEKNL-------FTWNAMLVGLAMHGLGRLSLVYFSRMIEA----RIKPDG-VTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 297 A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~ 364 (490)
|...+++...+.. ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|.
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 8888877765321 13445566677777777777777766432 111111 14444455566667777777
Q ss_pred HHHHHhHH
Q 042265 365 KLFDEMES 372 (490)
Q Consensus 365 ~~~~~~~~ 372 (490)
..+++...
T Consensus 314 ~~l~~al~ 321 (373)
T 1hz4_A 314 RVLLDALK 321 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.3e-10 Score=103.66 Aligned_cols=198 Identities=13% Similarity=0.115 Sum_probs=129.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCC-------C----CeehHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQE-------K----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA------RI 340 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~ 340 (490)
..++..+...|...|++++|...++++.+ + ...++..+...+...|++++|...+++.... .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455555555566666666555554331 1 2346788888999999999999999988764 11
Q ss_pred -CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh-----C-CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-----
Q 042265 341 -KPDGVTILGALVGCSHAGLVDEARKLFDEMESVY-----G-VSKELKHYGCMADLLGRAGLIEEALEMIKKMPM----- 408 (490)
Q Consensus 341 -~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 408 (490)
+....++..+...+...|++++|...++++.+.. . .+....++..+...|...|++++|...+++...
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2235677788888999999999999999987631 1 222356778888999999999999998876531
Q ss_pred -----CC-CHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 409 -----GG-DVFVWSGLLGGCRIHG------NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 409 -----~~-~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+ ....+..+.......+ .+..+...++......|....++..++.+|...|++++|..++++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 2233333333333322 2333444444333344555668889999999999999999999988653
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=2.4e-10 Score=102.88 Aligned_cols=162 Identities=12% Similarity=-0.037 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHhhcc-CcHHHHHHHHHHhHHhhCCCCC----c
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARI---KP--DGVTILGALVGCSHA-GLVDEARKLFDEMESVYGVSKE----L 380 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~ 380 (490)
+|+.+..+|...|++++|+..+++..+... .+ ...++..+...|... |++++|...|++..+......+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344445555555555555555554433110 00 023555666666664 7777777777776653111111 2
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMPM-GG---DV-----FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV--- 448 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--- 448 (490)
.++..+...+.+.|++++|+..|++... .| .. ..+..++.++...|++++|+..++++++++|.....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 3566677777777777777777776431 11 11 256666777777888888888888888877765432
Q ss_pred --HHHHHHHHH--hcCChHHHHHHHHHH
Q 042265 449 --YKVLADVYA--NADRWEDVVKIRRSL 472 (490)
Q Consensus 449 --~~~l~~~~~--~~g~~~~A~~~~~~m 472 (490)
+..++.++. ..+++++|+..|+++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 334555554 345677777777654
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=3.4e-10 Score=113.78 Aligned_cols=162 Identities=9% Similarity=-0.045 Sum_probs=106.6
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
..+|+.|..+|.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|...|+++.+.. +.+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456666777777777777777777666642 2234566666677777777777777777766664 4456666677777
Q ss_pred HHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
|.+.|++++|++.|++..+ .+...|+.+..+|...|++++|++.|++..+... -+...+..+...+...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHH
Confidence 7777777777777766543 2455677777777777777777777777766421 14556667777777777777777
Q ss_pred HHHHHhHH
Q 042265 365 KLFDEMES 372 (490)
Q Consensus 365 ~~~~~~~~ 372 (490)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666544
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=6.1e-10 Score=99.33 Aligned_cols=197 Identities=14% Similarity=0.041 Sum_probs=109.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC-------C---
Q 042265 245 ALVSALSACARLGELEQGKNIHRYIELN------QI-RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-------K--- 307 (490)
Q Consensus 245 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--- 307 (490)
.+..+..++...|++++|...++++.+. +- +....++..+..+|...|++++|...|++..+ +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4444455555555555555555544433 11 12233445555555555555555555544331 1
Q ss_pred -CeehHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh-----
Q 042265 308 -NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA------RIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESVY----- 374 (490)
Q Consensus 308 -~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 374 (490)
...++..+...+...|++++|...++++.+. +-.| ...++..+...+...|++++|...++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 1235566666777777777777777776553 1122 24567778888888899999998888877631
Q ss_pred -CCCC-CchHHHHHHhhhhh------cCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 375 -GVSK-ELKHYGCMADLLGR------AGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 375 -~~~~-~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
...+ ....+..+...+.. ...+.++...++...... ...++..+...|...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 22333333333332 233455555555554332 5667888999999999999999999998874
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=2.9e-09 Score=93.99 Aligned_cols=238 Identities=10% Similarity=-0.019 Sum_probs=150.2
Q ss_pred hcCCHHHHHHHHhhCCCCCee-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 042265 189 KAGDLAHARQLFDRMPFRDAV-SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHR 267 (490)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 267 (490)
-.|.+..++.-..++...+.. .-.-+.++|...|++... ..-.|....+..+...+ ..+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence 345555555544444322222 222234666666665531 11223333333333332 222 556666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC-----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 042265 268 YIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK-----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP 342 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 342 (490)
+..+.+ +++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 665554 444555557777788888888888888776432 3446667788888999999999999998774 55
Q ss_pred -----CHHHHHHHHHHh--hccC--cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-----
Q 042265 343 -----DGVTILGALVGC--SHAG--LVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM----- 408 (490)
Q Consensus 343 -----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 408 (490)
+..+...+..++ ...| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 355666666662 2234 899999999998763 34422333444478889999999999876543
Q ss_pred ------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 042265 409 ------GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 409 ------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 448 (490)
.| ++.++..++......|+ +|.++++++.+..|+++.+
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 13 77777677777667787 8899999999999999833
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=6.3e-10 Score=100.06 Aligned_cols=218 Identities=9% Similarity=-0.064 Sum_probs=130.5
Q ss_pred CHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 042265 192 DLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL----DIKPD-NIALVSALSACARLGELEQGKNIH 266 (490)
Q Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 266 (490)
++++|...|++. +..|...|++++|.+.|.+..+. |-+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367776665543 66677778888888777776542 21111 346666777777777777777776
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC-
Q 042265 267 RYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMH-GLGRLSLVYFSRMIEARIK-PD- 343 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~-p~- 343 (490)
++..+. +...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 665543 1112222221 12355566666664 7777777777766542110 01
Q ss_pred ---HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCch-----HHHHHHhhhhhcCCHHHHHHHHhhCCC-CCC---
Q 042265 344 ---GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELK-----HYGCMADLLGRAGLIEEALEMIKKMPM-GGD--- 411 (490)
Q Consensus 344 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--- 411 (490)
..++..+...+...|++++|...|+++.+.....+... .+..+..++...|++++|...+++... .|+
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 24566777778888888888888888776411112211 456677777788888888888877543 231
Q ss_pred ---HHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCC
Q 042265 412 ---VFVWSGLLGGCR--IHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 412 ---~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...+..++.++. ..+++++|+..|+++.+++|...
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 123444555554 45678888888877777777544
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=2e-09 Score=92.63 Aligned_cols=184 Identities=9% Similarity=-0.007 Sum_probs=121.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCC--CC----eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQE--KN----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG--VTILG 349 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ 349 (490)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455567778888888888888887663 32 235667777888888888888888888775322111 13333
Q ss_pred HHHHhhc------------------cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCC
Q 042265 350 ALVGCSH------------------AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGD 411 (490)
Q Consensus 350 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (490)
+..++.. .|++++|...|+++.+ ..|.+............ .... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~----~~~~-----------~ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVF----LKDR-----------L 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHH----HHHH-----------H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHH----HHHH-----------H
Confidence 3444432 4567777777777765 23333333222111100 0000 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 412 VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG---GVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
......+...+.+.|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456778899999999999999999999876 56889999999999999999999998876543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=1.1e-09 Score=85.38 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=79.4
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP--MGGDVFVWSGLLGGCRIH 425 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 425 (490)
..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++. ...+...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444444555555555555555442 22334444455555555555555555555432 112555666677777788
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|++++|...++++.+..|.++.++..++.++.+.|++++|...++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888877777777778888888888888888888777654
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=3.9e-09 Score=89.87 Aligned_cols=162 Identities=9% Similarity=-0.086 Sum_probs=131.1
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----cHHHHHHHHHHhHHhhCCCCCchH
Q 042265 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG----LVDEARKLFDEMESVYGVSKELKH 382 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~ 382 (490)
.++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+. .++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355666677777777888888888888888765 55667777777777 6 899999999998774 35666
Q ss_pred HHHHHhhhhh----cCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 383 YGCMADLLGR----AGLIEEALEMIKKMPMGGD----VFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 383 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
+..|...|.. .+++++|.++|++....++ +..+..|...|.. .+++++|+.+++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 7899999999998776665 8889999999988 88999999999999988 66677899
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHhcCCC
Q 042265 451 VLADVYANA-D-----RWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 451 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 477 (490)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999887764
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=6.1e-10 Score=98.42 Aligned_cols=181 Identities=12% Similarity=-0.017 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-C---eehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHH
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQE--K-N---LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPD-GVTILGALV 352 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~~l~~ 352 (490)
+..+...+.+.|++++|...|+++.+ | + ...+..+..++...|++++|+..|++..+... .|. ...+..+..
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 33334444444444444444444332 1 1 22344444455555555555555555554321 111 223334444
Q ss_pred Hhhc--------cCcHHHHHHHHHHhHHhhCCCCCchHH-----------------HHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 353 GCSH--------AGLVDEARKLFDEMESVYGVSKELKHY-----------------GCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 353 ~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
++.. .|++++|...|+++.+. .+.+.... ..+...|.+.|++++|+..|+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444 55666666666665553 12222222 456777888888888888887753
Q ss_pred -CCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCCc---hHHHHHHHHHhcCChH
Q 042265 408 -MGG----DVFVWSGLLGGCRIH----------GNVEIAEAAAEHVMKLKPEDGG---VYKVLADVYANADRWE 463 (490)
Q Consensus 408 -~~~----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 463 (490)
..| ....+..++.+|... |++++|+..++++++..|+++. +...+...+.+.|+++
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 222 345677777777755 8889999999999999998863 3334444444444443
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=2e-10 Score=115.88 Aligned_cols=145 Identities=15% Similarity=-0.059 Sum_probs=68.7
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
..+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+ -.+.+...+..+..+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHH
Confidence 344444444555555555555555544432 11334444444445555555555555555544 223334444445555
Q ss_pred hhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 390 LGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
|.+.|++++ .+.|++.. ..| +...+..+..++.+.|++++|+..++++++.+|++..++..++.++..
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 555555555 54444432 122 444555555555555555555555555555555554455555555444
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=8.9e-09 Score=90.92 Aligned_cols=240 Identities=13% Similarity=0.008 Sum_probs=167.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
++-..-.|++..++.-..++. ..........+.+++...|+.+.. ..-.|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 445566799988887433321 122233444556778777776531 111233333443333 33333
Q ss_pred HHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 042265 295 NTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPDGVTILGALVGCSHAGLVDEARKLFDEM 370 (490)
Q Consensus 295 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (490)
|+..|++..+ ++..++..+..++...|++++|++++.+.+..+. .-+...+..+++.+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776653 4455666788889999999999999999877654 235667888899999999999999999999
Q ss_pred HHhhCCCC-----CchHHHHHHhh--hhh--cCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 371 ESVYGVSK-----ELKHYGCMADL--LGR--AGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 371 ~~~~~~~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.+. .| +..+...++.+ ... .+++++|..+|+++...+ +..+...+..++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 874 34 24455555555 333 349999999999987554 433444455589999999999999998877
Q ss_pred h----------CCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 441 L----------KPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 441 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
. +|+++.++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5 58899898788777777887 8899999987764
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=7.3e-11 Score=94.48 Aligned_cols=140 Identities=11% Similarity=-0.047 Sum_probs=95.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCH
Q 042265 318 GLAMHGLGRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLI 396 (490)
Q Consensus 318 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (490)
.+...|++++|+..++..... .|+ ...+..+...|.+.|++++|.+.|+++.+ -.+.+...|..+..+|...|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 344456666666666665432 222 23344566667777777777777777776 3445666777777777777777
Q ss_pred HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 397 EEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEA-AAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 397 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
++|...|++.. ..| ++..+..+...+.+.|++++|.+ +++++++++|+++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777643 234 67788888888888888876555 4588888888888888888888777764
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=7.8e-08 Score=92.66 Aligned_cols=370 Identities=9% Similarity=-0.068 Sum_probs=211.8
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCC-chhHHHHHHHhhhC-CCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--YPSTFSYNTIIRAHTLFSS-PLNAVVLFSQMRTV-SIP 108 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-~~~ 108 (490)
.-..+|...+..+- .|+++.|..+|++.. .|++..|...+....+.++ .+....+|+..... |..
T Consensus 13 ~aR~vyer~l~~~P-----------~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d 81 (493)
T 2uy1_A 13 SPSAIMEHARRLYM-----------SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY 81 (493)
T ss_dssp CHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHCC-----------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC
Confidence 45567777777777 377888888887643 3677778777777666653 35566777766653 322
Q ss_pred C-CcccHHHHHHHHh----ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHH
Q 042265 109 P-DFYSFPFLLRACS----QLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTL 183 (490)
Q Consensus 109 p-~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 183 (490)
| +...|...+..+. ..++.+.+..+|+..+......-...|......-. ......+..++.+... .|..
T Consensus 82 ~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~~~----~y~~- 155 (493)
T 2uy1_A 82 WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDTLP----IFQS- 155 (493)
T ss_dssp TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHH----HHHH-
T ss_pred cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHHhH----HHHH-
Confidence 2 3445555555443 23566777778887776321111222322222111 1112222222222110 0000
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcC--C-----hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 042265 184 IDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSD--Q-----CEEAIQLFCNMMDLDIKPDNIALVSALSACARL 256 (490)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 256 (490)
+ ...++++..++.. .+...|...+.--...+ - .+.+..+|++++... +.+...|...+..+.+.
T Consensus 156 --a---r~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 156 --S---FQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp --H---HHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred --H---HHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 0 0001222222221 12234544444322211 1 345677888877753 44566777777777888
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH-HHHHhccC--C-------C---CeehHHHHHHHHHHcC
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTA-IEIFESSQ--E-------K---NLFTWNAMLVGLAMHG 323 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~--~-------~---~~~~~~~l~~~~~~~~ 323 (490)
|+.+.|..++++.... |.+...+.. |....+.++. ..+.+... . + ....|...+....+.+
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 9999999999998887 444433332 2222111111 11222111 0 0 1235666666666788
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHH
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSH-AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEM 402 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (490)
+.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.+ +.++..+...++.....|+.+.|..+
T Consensus 301 ~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 301 GLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp CHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999998 32 12344444432222122 346999999999999853 33445566678888889999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 403 IKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
|+++.. ....|...+..-...|+.+.+..+++++.+
T Consensus 377 ~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999842 678888888888889999999999999886
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=1.4e-09 Score=96.04 Aligned_cols=169 Identities=11% Similarity=-0.041 Sum_probs=135.8
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-CchH
Q 042265 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD---GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSK-ELKH 382 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 382 (490)
.+...+..+...+...|++++|+..|+++.+.... + ...+..+..++...|++++|...|+++.+.+...| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35566777888899999999999999999886322 2 56778888899999999999999999998532222 2456
Q ss_pred HHHHHhhhhh--------cCCHHHHHHHHhhCC-CCC-CHHHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 042265 383 YGCMADLLGR--------AGLIEEALEMIKKMP-MGG-DVFVW-----------------SGLLGGCRIHGNVEIAEAAA 435 (490)
Q Consensus 383 ~~~l~~~~~~--------~g~~~~A~~~~~~~~-~~~-~~~~~-----------------~~l~~~~~~~~~~~~a~~~~ 435 (490)
+..+..++.. .|++++|...|+++. ..| +.... ..+...+...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7778888888 999999999998864 223 22222 56678899999999999999
Q ss_pred HHHHhhCCCCC---chHHHHHHHHHhc----------CChHHHHHHHHHHhcCC
Q 042265 436 EHVMKLKPEDG---GVYKVLADVYANA----------DRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 436 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 476 (490)
+++++..|+++ .++..++.+|... |++++|...++++.+..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999999854 4788999999877 89999999999987653
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.08 E-value=1.8e-09 Score=96.68 Aligned_cols=175 Identities=8% Similarity=-0.049 Sum_probs=136.9
Q ss_pred HHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh
Q 042265 295 NTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVY 374 (490)
Q Consensus 295 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (490)
+.....+......+...+..+...+...|++++|...|++..+... -+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3344444444444555666777888899999999999999887632 25677888888999999999999999998764
Q ss_pred CCCCCchHH-HHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CchH
Q 042265 375 GVSKELKHY-GCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED--GGVY 449 (490)
Q Consensus 375 ~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~ 449 (490)
.|+.... ......+...++.++|.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|++ ..++
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 2343322 223334667788888888887754 344 88999999999999999999999999999999988 7789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 042265 450 KVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
..++.++...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999999988754
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=3.9e-09 Score=82.19 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667778888888888888888887753 235667777888888889999999999988873 345666778888888
Q ss_pred hhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 391 GRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
...|++++|.+.++++.. .| +...+..++..+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999998887542 22 6788888999999999999999999999998875
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=3.9e-10 Score=90.18 Aligned_cols=124 Identities=12% Similarity=-0.054 Sum_probs=103.3
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGN 427 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 427 (490)
|...+...|++++|+..++.... ..+.+...+..+...|.+.|++++|++.|++.. ..| ++.+|..+...+...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 44556778999999999998875 333345566779999999999999999999864 344 89999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHH-HHHHhcC
Q 042265 428 VEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKI-RRSLDAG 475 (490)
Q Consensus 428 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 475 (490)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887765 5776553
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=3.4e-09 Score=105.00 Aligned_cols=160 Identities=10% Similarity=0.011 Sum_probs=123.7
Q ss_pred cCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 291 CGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
.|++++|.+.|++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999987753 45678889999999999999999999998864 235778888999999999999999999
Q ss_pred HHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhC
Q 042265 368 DEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH---GNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 442 (490)
++..+. .+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999883 45567888999999999999999999998854 233 788899999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 042265 443 PEDGGVYKVLA 453 (490)
Q Consensus 443 p~~~~~~~~l~ 453 (490)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=2.2e-09 Score=88.50 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=95.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh-hhhc
Q 042265 315 MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL-LGRA 393 (490)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 393 (490)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. . |++..+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~-p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--Y-QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--G-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--c-CChHHHHHHHHHHHHhh
Confidence 3444445555555555555443321 113344555555555555555555555555442 1 122222111111 1111
Q ss_pred CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCChHHHHHHH
Q 042265 394 GLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED--GGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 394 g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+...+|...+++.. ..| +...+..+...+...|++++|+..++++++.+|+. +.++..++.++...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 22223555565533 234 78888999999999999999999999999999875 458999999999999999999999
Q ss_pred HHHh
Q 042265 470 RSLD 473 (490)
Q Consensus 470 ~~m~ 473 (490)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=7.6e-09 Score=93.71 Aligned_cols=218 Identities=11% Similarity=0.046 Sum_probs=135.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042265 221 SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACAR-LGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIE 299 (490)
Q Consensus 221 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 299 (490)
.|++++|.+++++..+... .. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566677777766554211 00 111 35555555555443 234555566666665
Q ss_pred HHhccCCC-----C----eehHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCcHHHHHH
Q 042265 300 IFESSQEK-----N----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR---IKPD--GVTILGALVGCSHAGLVDEARK 365 (490)
Q Consensus 300 ~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~ 365 (490)
.|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 55543321 1 2356667777778888888888887765421 1111 3466777777877 99999999
Q ss_pred HHHHhHHhhCCCC----CchHHHHHHhhhhhcCCHHHHHHHHhhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 042265 366 LFDEMESVYGVSK----ELKHYGCMADLLGRAGLIEEALEMIKKMPM----GGD----VFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 366 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
.|++..+...... ...++..+...|.+.|++++|+..|++... .++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9888876421111 135677788888899999999988887542 122 2356666777778899999999
Q ss_pred HHHHHHhhCCCCCch-----HHHHHHHHHhcCChHHHHH
Q 042265 434 AAEHVMKLKPEDGGV-----YKVLADVYANADRWEDVVK 467 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 467 (490)
.+++++ ..|..... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88875533 33445544 5677665555
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=9.1e-09 Score=87.31 Aligned_cols=182 Identities=8% Similarity=-0.036 Sum_probs=122.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCC
Q 042265 245 ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGL 324 (490)
Q Consensus 245 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (490)
.+......+...|++++|...|++..+.. |.+...+... ..... ..........+..++...|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCC
Confidence 34445556667788888888888777653 2222222110 00000 00011223447788889999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC--HHHHHHH
Q 042265 325 GRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL--IEEALEM 402 (490)
Q Consensus 325 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~ 402 (490)
+++|+..|++..+... -+...+..+...+...|++++|...|+++.+ -.|.+...+..+...|...|. .+.+...
T Consensus 70 ~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 70 YDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999888642 2667888888999999999999999999988 445667788888888766554 4456667
Q ss_pred HhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 403 IKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 403 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
++.....+ ....+.....++...|++++|+..|++++++.|++
T Consensus 147 ~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 147 YKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 77665332 22344556666778899999999999999999974
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1.4e-08 Score=102.39 Aligned_cols=168 Identities=13% Similarity=-0.030 Sum_probs=87.7
Q ss_pred HccCChHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHc
Q 042265 254 ARLGELEQGKNIHRYIE--------LNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMH 322 (490)
Q Consensus 254 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 322 (490)
...|++++|...++++. +.. +.+...+..+..+|...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555555 222 33445555555555566666666655555442 2344555555555666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEM 402 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (490)
|++++|+..|++..+... -+...+..+..++.+.|++++ .+.|+++.+ -.+.+...+..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666555321 133445555555556666666 666666555 2333445555566666666666666666
Q ss_pred HhhCCC-CC-CHHHHHHHHHHHHhcC
Q 042265 403 IKKMPM-GG-DVFVWSGLLGGCRIHG 426 (490)
Q Consensus 403 ~~~~~~-~~-~~~~~~~l~~~~~~~~ 426 (490)
|++... .| +...+..+..++...+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 665442 22 3445555555544433
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.95 E-value=8.1e-10 Score=87.95 Aligned_cols=98 Identities=13% Similarity=-0.068 Sum_probs=85.2
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
+...+..+...+.+.|++++|...|++.. ..| ++..|..+..++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 44567778888889999999999998864 334 8889999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhcCC
Q 042265 457 ANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+.|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887653
No 108
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=9.9e-08 Score=85.68 Aligned_cols=159 Identities=6% Similarity=-0.003 Sum_probs=119.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc----hHHHH
Q 042265 315 MLVGLAMHGLGRLSLVYFSRMIEARI-KPDGV----TILGALVGCSHAGLVDEARKLFDEMESVYGVSKEL----KHYGC 385 (490)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 385 (490)
.+..+...|++++|...+++...... .|+.. .+..+...+...|++++|...++++.+.....++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667888999999999988876422 22221 23345666777889999999999988731222232 26888
Q ss_pred HHhhhhhcCCHHHHHHHHhhCC-------CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHH
Q 042265 386 MADLLGRAGLIEEALEMIKKMP-------MGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED------GGVYK 450 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~-------~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 450 (490)
+...|...|++++|...++++. ..+ ...++..++..|.+.|++++|+..+++++++.+.. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999998887754 211 44578899999999999999999999999844332 45788
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHh
Q 042265 451 VLADVYANADR-WEDVVKIRRSLD 473 (490)
Q Consensus 451 ~l~~~~~~~g~-~~~A~~~~~~m~ 473 (490)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999988765
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=6.7e-07 Score=79.75 Aligned_cols=230 Identities=10% Similarity=0.039 Sum_probs=159.5
Q ss_pred HhcCC-hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHH----Hh
Q 042265 219 AQSDQ-CEEAIQLFCNMMDLDIKPD-NIALVSALSACARLG--ELEQGKNIHRYIELNQIRVDSFLSTGLVDFY----AK 290 (490)
Q Consensus 219 ~~~g~-~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 290 (490)
.+.|. .++|++++++++.. .|+ ...++.--.++...+ ++++++..++.+.... +-+..+|+.-...+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 34444 46888988888875 344 445676677777777 8889999888888876 55555665544444 44
Q ss_pred c---CCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc---
Q 042265 291 C---GYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGR--LSLVYFSRMIEARIKPDGVTILGALVGCSHAGL--- 359 (490)
Q Consensus 291 ~---~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--- 359 (490)
. +++++++++++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 4 678888888877764 35567777666777777777 888888888876543 55666655555555555
Q ss_pred ---HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH-HHHHHhhCCC-----CCCHHHHHHHHHHHHhcCCHHH
Q 042265 360 ---VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE-ALEMIKKMPM-----GGDVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 360 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~ 430 (490)
++++.+.++.+.. ..+-|...|+.+...+.+.|+..+ +..+..++.. ..++..+..++..+.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 7888888888877 456677777777777777777544 4445555442 1277778888888888888888
Q ss_pred HHHHHHHHHh-hCCCCCchHHHHHH
Q 042265 431 AEAAAEHVMK-LKPEDGGVYKVLAD 454 (490)
Q Consensus 431 a~~~~~~~~~-~~p~~~~~~~~l~~ 454 (490)
|+++++.+.+ .+|.+...|...+.
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHHh
Confidence 8888888886 78877766655443
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=1.5e-08 Score=78.05 Aligned_cols=108 Identities=11% Similarity=0.006 Sum_probs=73.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCR 423 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 423 (490)
.+......+.+.|++++|.+.|++..+ -.+.+...|..+..+|.+.|++++|+..+++.. ..| +...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 455556666677777777777777766 344556666667777777777777777776643 222 6677777777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
..|++++|++.|+++++++|+++.++..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777777666666544
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=1.4e-08 Score=100.51 Aligned_cols=148 Identities=9% Similarity=-0.082 Sum_probs=90.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHH
Q 042265 256 LGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYF 332 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 332 (490)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777776654 44566777777777777777777777776654 24556777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc---CCHHHHHHHHhhCC
Q 042265 333 SRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA---GLIEEALEMIKKMP 407 (490)
Q Consensus 333 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 407 (490)
++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+...+... |++++|.+.+++..
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 7777653 224566777777777777777777777777763 344556667777777777 77777777776643
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=9.2e-09 Score=93.17 Aligned_cols=196 Identities=9% Similarity=-0.044 Sum_probs=149.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHH
Q 042265 255 RLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK-CGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFS 333 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (490)
..|++++|.+++++..+... .. +.+ .++++.|...|.+ ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 35778889999988876531 11 112 4788888888765 3567889999999999998
Q ss_pred HHHHCCC---CC--CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHh
Q 042265 334 RMIEARI---KP--DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIK 404 (490)
Q Consensus 334 ~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (490)
+..+... .+ -..+|..+...|...|++++|...|++..+.+....+ ..++..+...|.. |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8765311 11 1347888888899999999999999988764221111 3567788889988 99999999998
Q ss_pred hCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCChHHHHHHHH
Q 042265 405 KMPM----GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG------GVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 405 ~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
+... .+ ...++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7531 11 256788899999999999999999999999765543 256677888888999999999999
Q ss_pred HHh
Q 042265 471 SLD 473 (490)
Q Consensus 471 ~m~ 473 (490)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=7.7e-08 Score=81.74 Aligned_cols=171 Identities=16% Similarity=0.025 Sum_probs=112.8
Q ss_pred hHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----ChHHHHHHH
Q 042265 94 NAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH----RLRDAQELF 169 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 169 (490)
+|++.|++..+.| +...+..+...+...+++++|...|+...+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666543 55566666666666777777777777776654 44555566666665 5 677777777
Q ss_pred HhcccC-CchhHHHHHHHHHh----cCCHHHHHHHHhhCCCCC-----eehHHHHHHHHHh----cCChhHHHHHHHHHH
Q 042265 170 DEILYR-DVVSCNTLIDGYVK----AGDLAHARQLFDRMPFRD-----AVSWGTLVAGYAQ----SDQCEEAIQLFCNMM 235 (490)
Q Consensus 170 ~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 235 (490)
++..++ +...+..+...|.. .+++++|.+.|++..+.+ +.++..|...|.. .+++++|.++|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 776554 45566666666665 667777777777755442 4677777777777 777888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHcc------CChHHHHHHHHHHHHcC
Q 042265 236 DLDIKPDNIALVSALSACARL------GELEQGKNIHRYIELNQ 273 (490)
Q Consensus 236 ~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 273 (490)
+. ..+...+..+...|... .+.++|..+++...+.|
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 75 22344556666666432 27888888888877776
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=3.1e-09 Score=84.61 Aligned_cols=98 Identities=10% Similarity=-0.002 Sum_probs=44.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHh
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRI 424 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~ 424 (490)
+..+...+...|++++|...|+++.. ..+.+...+..+..+|...|++++|+..|++.. ..| ++..+..+..++..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33344444455555555555555444 223334444444444444455555544444432 111 34444444444444
Q ss_pred cCCHHHHHHHHHHHHhhCCCCC
Q 042265 425 HGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 425 ~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.|++++|+..|+++++..|+++
T Consensus 102 ~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCG
T ss_pred cCCHHHHHHHHHHHHHHCcCCC
Confidence 4555555555555444444443
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=8.5e-08 Score=85.77 Aligned_cols=164 Identities=6% Similarity=-0.031 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC--CeehHH-HHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK--NLFTWN-AML 316 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~-~l~ 316 (490)
+.+...+..+...+...|++++|...++++.+.. |.+...+..+..++.+.|++++|...++++... +..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344566777788888899999999999888876 667788888889999999999999999988753 322221 222
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCH
Q 042265 317 VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLI 396 (490)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (490)
..+...++.++|+..+++..... +.+...+..+...+...|++++|...|+++.+......+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23556777788888888887753 23567777788888888888888888888887411112256677777777777877
Q ss_pred HHHHHHHhh
Q 042265 397 EEALEMIKK 405 (490)
Q Consensus 397 ~~A~~~~~~ 405 (490)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 777776654
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=4.8e-08 Score=83.96 Aligned_cols=184 Identities=11% Similarity=-0.038 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CC-ee---hHH
Q 042265 242 DNIALVSALSACARLGELEQGKNIHRYIELNQIRV--DSFLSTGLVDFYAKCGYINTAIEIFESSQE--KN-LF---TWN 313 (490)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~~~ 313 (490)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+ .. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556677788899999999999999999874211 135778889999999999999999998764 32 22 455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhh
Q 042265 314 AMLVGLAM------------------HGLGRLSLVYFSRMIEARIKPDGV-TILGALVGCSHAGLVDEARKLFDEMESVY 374 (490)
Q Consensus 314 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (490)
.+..++.. .|++++|...|+++++. .|+.. ....... . ..+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHHHH--
Confidence 55555554 57899999999999886 34432 2211111 0 011111111
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-D---VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
....+...|.+.|++++|+..|+++. ..| + ...+..+..++.+.|++++|++.++++....|++.
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12346777889999999999998865 233 2 35788889999999999999999999988888765
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.86 E-value=1.2e-07 Score=91.49 Aligned_cols=374 Identities=9% Similarity=-0.048 Sum_probs=221.0
Q ss_pred CCC-ChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC-cHHHHHHH
Q 042265 57 TTD-PLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS-HSLAQTIH 134 (490)
Q Consensus 57 ~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 134 (490)
+.| +++.|+.+|++.. ..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 556 3777777776643 11111 8999999999999874 4788888888887776663 45677788
Q ss_pred HHHHHh-CC-CCchhHHHHHHHHHHh----cCChHHHHHHHHhcccCCchhHHHHHHHHH---hcCCHHHHHHHHhhCCC
Q 042265 135 SQVLKL-GF-ICDVFVLNSLMHVYCV----FHRLRDAQELFDEILYRDVVSCNTLIDGYV---KAGDLAHARQLFDRMPF 205 (490)
Q Consensus 135 ~~~~~~-g~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~ 205 (490)
+..+.. |. +.+..+|...+..+.. .++.+.+.++|++.+......+..+-..|. +..+...+.+++.+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~--- 148 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD--- 148 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH---
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH---
Confidence 887764 42 3466788887776542 467888999999886532222222222221 11122222222221
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHcCCCCCh
Q 042265 206 RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL--GE-----LEQGKNIHRYIELNQIRVDS 278 (490)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~ 278 (490)
. .+.+..|..+++++...-...+...|...+.--... +- .+.+..+|++++... +.+.
T Consensus 149 ------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~ 213 (493)
T 2uy1_A 149 ------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAE 213 (493)
T ss_dssp ------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCH
T ss_pred ------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCH
Confidence 1 122333444444433210001223444433332221 11 345677899988764 6678
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC---CHHH
Q 042265 279 FLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR---------IKP---DGVT 346 (490)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---------~~p---~~~~ 346 (490)
.+|...+..+.+.|+.+.|..+|++.... +..... -..|....+.++. ++.+.+.- ..+ ....
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l-~~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFL-SLYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHH-HHHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHH-HHHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHH
Confidence 88988999999999999999999875532 221111 1122222121221 22222210 011 1244
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc-CCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA-GLIEEALEMIKKMPM-GG-DVFVWSGLLGGCR 423 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 423 (490)
|...+....+.++.+.|..+|+++ .. ...+...|...+..-... ++.+.|..+|+.... -| ++..|...+....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 666666666778899999999999 42 223444454333332233 369999999987542 23 5566777777788
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
..|+.+.|..+++++ +.....|...+..-...|+.+.+..++++..+
T Consensus 366 ~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 366 RIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999998 33556788888888888999999998888764
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=4.3e-08 Score=83.06 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=11.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMD 236 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~ 236 (490)
...+...|++++|+..|++.++
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455555555555555544
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.86 E-value=2.5e-07 Score=82.51 Aligned_cols=214 Identities=13% Similarity=0.055 Sum_probs=171.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHhccCC---CCeehHHHHHHHH----HHc---CC
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG--YINTAIEIFESSQE---KNLFTWNAMLVGL----AMH---GL 324 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 324 (490)
...++|+...+.++..+ |-+..+++.-..++...+ ++++++++++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 44568999999999887 667778888888888888 99999999998774 3556777665555 555 78
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH--HHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC------H
Q 042265 325 GRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD--EARKLFDEMESVYGVSKELKHYGCMADLLGRAGL------I 396 (490)
Q Consensus 325 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 396 (490)
+++++.+++++.+...+ +...|..-.-.+.+.|.++ ++.+.++++.+ ..+.|...|+.-..++...|+ +
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 99999999999986433 6677777666677778887 99999999998 456677777776666666666 8
Q ss_pred HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhC---CCCCchHHHHHHHHHhcCChHHHHHHHH
Q 042265 397 EEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNV-EIAEAAAEHVMKLK---PEDGGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 397 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
+++++.++++. ..| |...|+.+...+.+.|+. +.+..+++++.+.+ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 88999888754 344 999999999888888874 44666888777765 8888899999999999999999999999
Q ss_pred HHhc
Q 042265 471 SLDA 474 (490)
Q Consensus 471 ~m~~ 474 (490)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=5.9e-08 Score=82.49 Aligned_cols=130 Identities=15% Similarity=-0.061 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
.+..+...+...|++++|...|++. +.|+...+..+...+...|++++|...+++..+. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 3456677788899999999988876 3667888888888899999999999999998873 455677888888889
Q ss_pred hhcCCHHHHHHHHhhCCC-CC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 391 GRAGLIEEALEMIKKMPM-GG-----------------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...|++++|.+.|++... .| ....+..+..++...|++++|...++++++..|.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999999988887542 11 237788888888999999999999999999888763
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=4.8e-08 Score=79.21 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC 422 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 422 (490)
..+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++.. ..| +...+..++..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555666677778888888888877763 34456677777788888888888888887643 223 778888899999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCChHHHHHHHHHHh
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV--YANADRWEDVVKIRRSLD 473 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~ 473 (490)
...|++++|...++++++..|.+...+..+..+ +.+.|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999988777555544 778899999999988764
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=2.5e-08 Score=82.10 Aligned_cols=152 Identities=13% Similarity=-0.043 Sum_probs=99.1
Q ss_pred HHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc
Q 042265 37 LTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS 113 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 113 (490)
....+...+. +.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..+.. |+...
T Consensus 8 ~~~~~a~~~~----------~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~ 75 (176)
T 2r5s_A 8 QLLKQVSELL----------QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSY 75 (176)
T ss_dssp THHHHHHHHH----------HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHH
T ss_pred HHHHHHHHHH----------HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHH
Confidence 4455566666 6888999999888875 3566778888888888999999998888877643 43332
Q ss_pred HHHHHHH-HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCC-----chhHHHHHHHH
Q 042265 114 FPFLLRA-CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRD-----VVSCNTLIDGY 187 (490)
Q Consensus 114 ~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~ 187 (490)
+..+... +...++...+...++...+.. |.+...+..+..++...|++++|...|+++...+ ...+..+...+
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 2222111 122233345677777777764 5567777788888888888888888887775432 22455555555
Q ss_pred HhcCCHHHHHHHHh
Q 042265 188 VKAGDLAHARQLFD 201 (490)
Q Consensus 188 ~~~~~~~~a~~~~~ 201 (490)
...|+.++|...|+
T Consensus 155 ~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 155 SALGQGNAIASKYR 168 (176)
T ss_dssp HHHCSSCHHHHHHH
T ss_pred HHhCCCCcHHHHHH
Confidence 55555555555444
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.83 E-value=6.6e-08 Score=86.84 Aligned_cols=162 Identities=7% Similarity=-0.018 Sum_probs=116.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG-----VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKH 382 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 382 (490)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+......+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677888888888888877765322111 12333455567788999999999888753111112 347
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhhCC----CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C----Cc
Q 042265 383 YGCMADLLGRAGLIEEALEMIKKMP----MGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE--D----GG 447 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~~ 447 (490)
++.+...|...|++++|...+++.. ..+ ...++..++..|...|++++|+..++++++..+. + ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7888889999999999998887653 122 2268888999999999999999999999884332 1 35
Q ss_pred hHHHHHHHHHhcCChHHH-HHHHHHHh
Q 042265 448 VYKVLADVYANADRWEDV-VKIRRSLD 473 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A-~~~~~~m~ 473 (490)
+|..++.+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788999999999999999 77677654
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=2.1e-08 Score=77.27 Aligned_cols=96 Identities=8% Similarity=-0.003 Sum_probs=87.6
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
...+......|.+.|++++|++.|++.. ..| +...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3456778889999999999999999854 344 89999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhcC
Q 042265 458 NADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~ 475 (490)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=9.4e-08 Score=81.20 Aligned_cols=145 Identities=13% Similarity=-0.041 Sum_probs=112.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 042265 280 LSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL 359 (490)
Q Consensus 280 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 359 (490)
.+..+...+...|++++|...|++...++...+..+...+...|++++|+..+++..... +.+...+..+...+...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345677788889999999999999888888888889999999999999999999888764 3356778888888999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCc----------------hHHHHHHhhhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHH
Q 042265 360 VDEARKLFDEMESVYGVSKEL----------------KHYGCMADLLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGC 422 (490)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 422 (490)
+++|...|+++.+. .+.+. ..+..+..+|...|++++|.+.|++.. ..|+.
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------- 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP---------- 154 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG----------
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc----------
Confidence 99999999998873 33333 677888888999999999999998754 33332
Q ss_pred HhcCCHHHHHHHHHHH
Q 042265 423 RIHGNVEIAEAAAEHV 438 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~ 438 (490)
..+..+.+...+++.
T Consensus 155 -~~~~~~~a~~~~~~~ 169 (213)
T 1hh8_A 155 -RHSKIDKAMECVWKQ 169 (213)
T ss_dssp -GGGHHHHHHHHHHTT
T ss_pred -ccchHHHHHHHHHhc
Confidence 234555565555543
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=4.7e-08 Score=75.83 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGG 421 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 421 (490)
...+..+...+...|++++|...+++..+ ..+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34555555666666666666666666665 333455566666666666777777776666543 122 67778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
+...|++++|+..++++++..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999888888888888888877654
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=6.8e-08 Score=73.86 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM--GGDVFVWSGLLGG 421 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 421 (490)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|..+++++.. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666667777777888888887777763 344556677777777788888888887776542 2267788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999988888888888776554
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=1.6e-08 Score=90.25 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-CChHHHHHHHHHHhcC
Q 042265 425 HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA-DRWEDVVKIRRSLDAG 475 (490)
Q Consensus 425 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 475 (490)
.|++++|++.++++++.+|++......+...+.+. +++++|.++|++..+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 57888888888888888887776666666666655 6788888888877653
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=5.2e-08 Score=75.23 Aligned_cols=117 Identities=8% Similarity=-0.047 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGG 421 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 421 (490)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+++.. ..| +...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345566666777778888888888887763 34456677777788888888888888887644 223 67788888999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
+...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988999999999888875
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.75 E-value=2.2e-08 Score=79.05 Aligned_cols=89 Identities=12% Similarity=-0.027 Sum_probs=44.3
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 385 CMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
.+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++.+|+++..+..++.+|...|++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 34444444455555555444432 122 4444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q 042265 463 EDVVKIRRSLD 473 (490)
Q Consensus 463 ~~A~~~~~~m~ 473 (490)
++|.+.+++..
T Consensus 103 ~~A~~~~~~al 113 (142)
T 2xcb_A 103 DGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=1.9e-08 Score=82.84 Aligned_cols=126 Identities=13% Similarity=0.035 Sum_probs=85.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh-hhhcCCH-
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL-LGRAGLI- 396 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 396 (490)
+...|++++|...+++..... +.+...+..+...+...|++++|...|+++.+. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 345677777888887777653 235567777777777888888888888887763 33455666667777 6677777
Q ss_pred -HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 397 -EEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 397 -~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
++|...+++.. ..| +...+..+...+...|++++|+..++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 78877777654 223 6677777777777888888888888888887777664
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.72 E-value=9.7e-08 Score=87.46 Aligned_cols=126 Identities=16% Similarity=0.034 Sum_probs=94.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC---------------chHHHHHHhhhhhcCCHHHHHHHHhhCC-CC
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKE---------------LKHYGCMADLLGRAGLIEEALEMIKKMP-MG 409 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 409 (490)
.+..+...+.+.|++++|...|++..+. .+.+ ...|..+..+|.+.|++++|+..+++.. ..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444444455555555555555555542 1111 3567778888888888888888887754 23
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHH-HHHHHHHh
Q 042265 410 G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDV-VKIRRSLD 473 (490)
Q Consensus 410 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 473 (490)
| +...+..+..++...|++++|+..|+++++++|++..++..++.++.+.|++++| ...+++|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 7888999999999999999999999999999999999999999999999999998 44566653
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.2e-07 Score=72.99 Aligned_cols=90 Identities=10% Similarity=-0.034 Sum_probs=45.9
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
..+...+.+.|++++|+..|++.. ..| +...|..+..++...|++++|+..++++++.+|+++.++..++.++...|+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 334444444455555554444432 112 445555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHh
Q 042265 462 WEDVVKIRRSLD 473 (490)
Q Consensus 462 ~~~A~~~~~~m~ 473 (490)
+++|...+++..
T Consensus 88 ~~~A~~~~~~al 99 (126)
T 3upv_A 88 YASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=9.6e-08 Score=71.45 Aligned_cols=99 Identities=13% Similarity=0.051 Sum_probs=84.1
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE--DGGVYKVLAD 454 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 454 (490)
+...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|+..++++++..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 45566777788888888888888887754 222 7788888999999999999999999999999999 8889999999
Q ss_pred HHHhc-CChHHHHHHHHHHhcCCC
Q 042265 455 VYANA-DRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 455 ~~~~~-g~~~~A~~~~~~m~~~~~ 477 (490)
++.+. |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887654
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=7.2e-07 Score=80.02 Aligned_cols=212 Identities=9% Similarity=0.066 Sum_probs=129.3
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCccc---HHHHHHHHHcCCCchh
Q 042265 18 QIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFS---YNTIIRAHTLFSSPLN 94 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 94 (490)
..+..+.... .. |+..+...+...+. =.++ .+|..-...+... +...+..+...|++++
T Consensus 32 ~~~s~~e~g~-~~--~~~~~l~~i~~~l~------------~~~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~ 93 (293)
T 3u3w_A 32 SEVSRIESGA-VY--PSMDILQGIAAKLQ------------IPII---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKE 93 (293)
T ss_dssp HHHHHHHTTS-CC--CCHHHHHHHHHHHT------------CCTH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCC-CC--CCHHHHHHHHHHhC------------cCHH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHH
Confidence 3444444433 44 88888888888887 1222 2333333232332 3344677889999999
Q ss_pred HHHHHHHhhhCCC-CCCcc----cHHHHHHHHhccCCcHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhcCChHH
Q 042265 95 AVVLFSQMRTVSI-PPDFY----SFPFLLRACSQLCSHSLAQTIHSQVLKLGFI-CD----VFVLNSLMHVYCVFHRLRD 164 (490)
Q Consensus 95 A~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~ 164 (490)
|..++++..+... .|+.. .+..+...+...+++++|...++...+.... ++ ..+++.+..+|...|++++
T Consensus 94 a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 173 (293)
T 3u3w_A 94 IYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKK 173 (293)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999887421 12211 2334566667778999999999998884322 22 2367888888888888888
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhC----
Q 042265 165 AQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL---- 237 (490)
Q Consensus 165 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---- 237 (490)
|...|+++.+ .++..... ...++..+...|.+.|++++|++.+++..+.
T Consensus 174 A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 174 GIDLFEQILK------------------------QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHH------------------------HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH------------------------HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 8888877531 11111110 1235566666777777777777776665532
Q ss_pred CCCCC-HHHHHHHHHHHHccCC-hHHHHHHHHHHHH
Q 042265 238 DIKPD-NIALVSALSACARLGE-LEQGKNIHRYIEL 271 (490)
Q Consensus 238 ~~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 271 (490)
+..+. ...|..+..++...|+ .++|...++++..
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 22222 4566777777777774 4777777776654
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=8.6e-08 Score=83.54 Aligned_cols=192 Identities=13% Similarity=-0.072 Sum_probs=108.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHhccCCC---------C----------
Q 042265 255 RLGELEQGKNIHRYIELNQIRVDSFLSTGL-------VDFYAKCGYINTAIEIFESSQEK---------N---------- 308 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~---------~---------- 308 (490)
..++.+.|.+.|.++.+.. |-....|..+ ...+.+.++..+++..+....+- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566677777777766664 4445555555 34444444444444444333321 1
Q ss_pred -----eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC--ch
Q 042265 309 -----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE--LK 381 (490)
Q Consensus 309 -----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 381 (490)
...+-.+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...+. . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 0112334555666777777777776665432 33333333444566777777777777654431 1 111 22
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVL 452 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 452 (490)
.+..+..++...|++++|++.|++....+ ..........++.+.|+.++|...|+++...+|. ..+...|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 45566777777777777777777654222 2335566666677777888888888887777776 5444444
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=9.7e-07 Score=79.15 Aligned_cols=170 Identities=8% Similarity=0.005 Sum_probs=95.7
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc------ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCC---Cc--
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF------YSFPFLLRACSQLCSHSLAQTIHSQVLKLGFI---CD-- 145 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~-- 145 (490)
..+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...++...+.... +.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555666677777777777777766654211 11 11223334445556667776666666543211 11
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcC
Q 042265 146 VFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSD 222 (490)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g 222 (490)
..+++.+...|...|++++|...+++.. ++++..... ...++..+...|...|
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal------------------------~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQIL------------------------KQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHHHhcCccccchHHHHHhHHHHHHHHh
Confidence 2355555666666666666666555532 111111111 1246677777788888
Q ss_pred ChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHH-HHHHHHHHH
Q 042265 223 QCEEAIQLFCNMMDL----DIKP-DNIALVSALSACARLGELEQG-KNIHRYIEL 271 (490)
Q Consensus 223 ~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 271 (490)
++++|+..+++..+. +... -..+|..+..++...|+.++| ...+++...
T Consensus 211 ~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 888888887776542 1111 145667777777888888887 666665543
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=2.9e-07 Score=77.24 Aligned_cols=96 Identities=10% Similarity=-0.036 Sum_probs=72.2
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
..+..+..+|...|++++|+..+++.. ..| +...+..+..++...|++++|+..++++++..|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 566777778888888888888887754 223 788889999999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHhcCC
Q 042265 459 ADRWEDVV-KIRRSLDAGK 476 (490)
Q Consensus 459 ~g~~~~A~-~~~~~m~~~~ 476 (490)
.++.+++. ..++.|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 98888877 5566665443
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=9.4e-08 Score=72.94 Aligned_cols=95 Identities=16% Similarity=0.001 Sum_probs=82.8
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
.+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34556777888999999999998864 334 8889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCC
Q 042265 460 DRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 460 g~~~~A~~~~~~m~~~~ 476 (490)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987653
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.62 E-value=2.5e-05 Score=70.45 Aligned_cols=231 Identities=11% Similarity=0.031 Sum_probs=147.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-C
Q 042265 217 GYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG-ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC-G-Y 293 (490)
Q Consensus 217 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 293 (490)
...+.+..++|++++++++... +-+...++.--.++...| .+++++.+++.+.... +-+..+|+.-..++.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344555678888888888753 224445666666666667 5888888888888776 56667777666666666 6 7
Q ss_pred HHHHHHHHhccCCC---CeehHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc---
Q 042265 294 INTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGR--------LSLVYFSRMIEARIKPDGVTILGALVGCSHAGL--- 359 (490)
Q Consensus 294 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--- 359 (490)
+++++++++++.+. |..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 88888888887764 4445555554554545555 788888888876433 66677766666666664
Q ss_pred ----HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCH--------------------HHHHHHHhhCCCC------
Q 042265 360 ----VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLI--------------------EEALEMIKKMPMG------ 409 (490)
Q Consensus 360 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~------ 409 (490)
++++.+.++++.. ..+-|...|+.+-..+.+.|+. .+..+...++...
T Consensus 220 ~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 6778888888776 4556667777666666666553 2333333333221
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCCchHHHH
Q 042265 410 --GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK-LKPEDGGVYKVL 452 (490)
Q Consensus 410 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l 452 (490)
+++..+..++..|...|+.++|.++++.+.+ .+|-....|...
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 2666667777777777777777777777763 666555444433
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=8.2e-08 Score=76.28 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=86.9
Q ss_pred CCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 378 KELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
.+...+..+...+...|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 355667778888999999999999998864 334 888999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhcC
Q 042265 456 YANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~ 475 (490)
|...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=2.5e-07 Score=72.27 Aligned_cols=100 Identities=14% Similarity=-0.079 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHH
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLG 420 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 420 (490)
+...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...+++.. ..| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445555555555666666666666655552 23334445555555555555555555554432 112 4455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
++...|++++|+..++++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555554444
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=3.9e-07 Score=68.74 Aligned_cols=108 Identities=14% Similarity=0.049 Sum_probs=59.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCR 423 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 423 (490)
.+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...+++.. ..| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444445555556666666666655552 23344455555555555555555555555432 112 4555666666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
..|++++|...++++.+..|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666665555554443
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=2.3e-07 Score=80.88 Aligned_cols=182 Identities=12% Similarity=-0.030 Sum_probs=136.2
Q ss_pred hcCCHHHHHHHHhccCCC---CeehHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------
Q 042265 290 KCGYINTAIEIFESSQEK---NLFTWNAM-------LVGLAMHGLGRLSLVYFSRMIEARIKPD---------------- 343 (490)
Q Consensus 290 ~~~~~~~A~~~~~~~~~~---~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------- 343 (490)
..++...|.+.|.++.+- ....|..+ ...+...++..+++..+.+-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 578999999999988753 34567766 4555555555555555554433 2222
Q ss_pred ------HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCC----HH
Q 042265 344 ------GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGD----VF 413 (490)
Q Consensus 344 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~ 413 (490)
......+...+...|++++|.+.|+.+.. +- |+......+...+.+.+++++|+..|+.....++ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--AG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233455667889999999999999886 32 3332666677789999999999999997765543 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLK--PE-DGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+..+..++...|++++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77888999999999999999999998633 54 44578899999999999999999999998754
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=1.5e-07 Score=76.31 Aligned_cols=110 Identities=14% Similarity=-0.010 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHH
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLG 420 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 420 (490)
+...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|+..+++.. ..| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567778888899999999999999999983 45577888999999999999999999998854 233 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
++...|++++|+..+++++++.|++...+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999876655443
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=1.3e-07 Score=72.88 Aligned_cols=92 Identities=7% Similarity=-0.027 Sum_probs=54.7
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc-------hHHHHH
Q 042265 383 YGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG-------VYKVLA 453 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 453 (490)
+..+...+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|++.+++++++.|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3445555556666666666665532 222 5566666666666666666666666666665555432 455556
Q ss_pred HHHHhcCChHHHHHHHHHHhc
Q 042265 454 DVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.++...|++++|++.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666666666544
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=3.4e-07 Score=70.83 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=88.8
Q ss_pred CCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 377 SKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|+..++++++..|.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445677888999999999999999999854 333 88899999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHhcC
Q 042265 455 VYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 455 ~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=4.2e-07 Score=76.38 Aligned_cols=83 Identities=12% Similarity=-0.072 Sum_probs=37.3
Q ss_pred hcCCHHHHHH---HHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhhccCcHH
Q 042265 290 KCGYINTAIE---IFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA----RIKP-DGVTILGALVGCSHAGLVD 361 (490)
Q Consensus 290 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 361 (490)
..|++++|.+ .+..-.......+..+...+...|++++|...+++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455566655 443322223344555555555555555555555554431 1111 1233444444455555555
Q ss_pred HHHHHHHHhHH
Q 042265 362 EARKLFDEMES 372 (490)
Q Consensus 362 ~a~~~~~~~~~ 372 (490)
+|...+++..+
T Consensus 84 ~A~~~~~~al~ 94 (203)
T 3gw4_A 84 AARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=5.1e-07 Score=69.35 Aligned_cols=111 Identities=11% Similarity=-0.064 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC 422 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 422 (490)
..+..+...+...|++++|...|++..+ ..+.+...+..+..+|.+.|++++|+..+++.. ..| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4455666667778888888888888777 345566777788888888888888888887754 233 788888999999
Q ss_pred HhcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHH
Q 042265 423 RIHGNVEIAEAAAEHVMKLK------PEDGGVYKVLADVYA 457 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 457 (490)
...|++++|+..++++++.. |.+..+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 877766666665543
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.57 E-value=3.1e-07 Score=75.41 Aligned_cols=121 Identities=6% Similarity=0.056 Sum_probs=99.0
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH-HHhcCCH--
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGG-CRIHGNV-- 428 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~~~~-- 428 (490)
+...|++++|...+++..+ ..+.+...+..+...|...|++++|...|++.. ..| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567888999999998887 345677888889999999999999999998854 223 77888888888 7788998
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 429 EIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 429 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
++|+..++++++..|+++.++..++.+|...|++++|...+++..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999999999999899999999999999999999999988764
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.56 E-value=4.6e-07 Score=73.37 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=44.1
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
.+..+...+.+.|++++|+..|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34444444445555555555544432 112 4444444444455555555555555555555555444455555555555
Q ss_pred CChHHHHHHHHHHh
Q 042265 460 DRWEDVVKIRRSLD 473 (490)
Q Consensus 460 g~~~~A~~~~~~m~ 473 (490)
|++++|...|++..
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555544443
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=2.5e-07 Score=72.95 Aligned_cols=107 Identities=16% Similarity=0.040 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC 422 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 422 (490)
..+..+...+...|++++|...|+++.. ..+.+...+..+..+|...|++++|...|++.. ..| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444556667778888888888888877 345567777788888888888888888887754 223 777888899999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
...|++++|+..++++++..|+++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 9999999999999999999998875554433
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=1.6e-07 Score=83.69 Aligned_cols=97 Identities=10% Similarity=-0.088 Sum_probs=68.7
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556667777777788888888887777643 2245566677777777778888877777777654 556667777777
Q ss_pred HHHhcCChHHHHHHHHhcc
Q 042265 155 VYCVFHRLRDAQELFDEIL 173 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~ 173 (490)
++...|++++|...|++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777763
No 154
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=5.3e-07 Score=71.56 Aligned_cols=100 Identities=12% Similarity=-0.034 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC 422 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 422 (490)
..+..+...+.+.|++++|...|+++.+ -.|.+...|..+..+|...|++++|+..|++.. ..| ++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3455566667778888888888888777 345566777778888888888888888887753 233 677888888889
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...|++++|+..|++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999888754
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=1.1e-06 Score=66.21 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=87.0
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|...++++++..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4556778888999999999999999864 233 88899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhcCC
Q 042265 458 NADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~~ 476 (490)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987654
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=5e-07 Score=75.87 Aligned_cols=64 Identities=16% Similarity=0.004 Sum_probs=32.4
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDL----DIKP-DNIALVSALSACARLGELEQGKNIHRYIEL 271 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 271 (490)
..++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555556666666666665555431 1111 123444555555555666666555555443
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=6.8e-07 Score=68.11 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=87.1
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
...+..+...+...|++++|.+.++++.. .| +..++..++..+...|++++|+..++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 46678888999999999999999988642 23 78889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhcCC
Q 042265 458 NADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~~ 476 (490)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987653
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.48 E-value=9.4e-05 Score=66.69 Aligned_cols=174 Identities=11% Similarity=0.007 Sum_probs=101.7
Q ss_pred HcCCCchhHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-Ch
Q 042265 87 TLFSSPLNAVVLFSQMRTVSIPPDFY-SFPFLLRACSQLC-SHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVF-H-RL 162 (490)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~ 162 (490)
.+.+..++|+++++++.... |+.. .|+.--..+...| .+++++.+++.++... +.+..+|+.-..++.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 34445556777777777643 4433 3554444455555 4777777777777664 55666666666665555 5 66
Q ss_pred HHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChh--------HHHHHHHHH
Q 042265 163 RDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCE--------EAIQLFCNM 234 (490)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m 234 (490)
++++++++++.+.|+.. ..+|+.-.-.+.+.|.++ ++++.++++
T Consensus 142 ~~EL~~~~k~L~~dpkN----------------------------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKN----------------------------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp HHHHHHHHHHTSSCTTC----------------------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC----------------------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 66666666665544332 222322222222223333 777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCC-------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042265 235 MDLDIKPDNIALVSALSACARLGE-------LEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY 293 (490)
Q Consensus 235 ~~~~~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (490)
++.. +-|...|+.....+.+.+. ++++.+.++++.... +-|...|+-+-..+.+.|+
T Consensus 194 I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 194 LRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7754 3366667666666666665 567777777777665 6666777666655555554
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=1.2e-06 Score=68.36 Aligned_cols=99 Identities=9% Similarity=-0.049 Sum_probs=83.7
Q ss_pred CCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 377 SKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
+.+...+..+...+...|++++|...|++.. ..| +...+..+...+...|++++|+..++++++..|+++.++..++.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3456778888888999999999999988754 233 78888888888999999999999999999999998888999999
Q ss_pred HHHhcCChHHHHHHHHHHhcC
Q 042265 455 VYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 455 ~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+|...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.47 E-value=1.5e-07 Score=71.42 Aligned_cols=89 Identities=11% Similarity=-0.000 Sum_probs=40.6
Q ss_pred cCcHHHHHHHHHHhHHhhC--CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 042265 357 AGLVDEARKLFDEMESVYG--VSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAE 432 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~ 432 (490)
.|++++|+..|+++.+. + .+.+...+..+..+|...|++++|.+.|++.. ..| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555542 1 12233444445555555555555555554432 112 4444555555555555555555
Q ss_pred HHHHHHHhhCCCCC
Q 042265 433 AAAEHVMKLKPEDG 446 (490)
Q Consensus 433 ~~~~~~~~~~p~~~ 446 (490)
..++++++..|+++
T Consensus 82 ~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCcH
Confidence 55555555555444
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.9e-06 Score=68.04 Aligned_cols=110 Identities=12% Similarity=-0.007 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHH
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWS 416 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 416 (490)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++.. ..| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3455566666666677777777777766642 233 4555566666666666666666665533 122 555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
.+..++...|++++|...++++++..|++..++..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 666666666666666666666666666665555544444
No 162
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=2.2e-06 Score=69.13 Aligned_cols=127 Identities=13% Similarity=-0.056 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 45566677778888888888888877653 235667777778888888888888888888873 455667788888888
Q ss_pred hhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 042265 391 GRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGG--CRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 440 (490)
...|++++|...+++... .| +...+..+..+ +...|++++|+..+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888877542 23 55555433333 7778899999998888765
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.5e-06 Score=68.53 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=73.8
Q ss_pred CCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 042265 378 KELKHYGCMADLLGRAGLIEEALEMIKKMP-MGGD----VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVL 452 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 452 (490)
.+...+..+...+...|++++|.+.|++.. ..|+ ...+..+...+...|++++|+..++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 455666777777778888888888887743 3344 56777777778888888888888888888888777777888
Q ss_pred HHHHHhcCChHHHHHHHHHHhcC
Q 042265 453 ADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+.+|...|++++|...+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888888888888888777654
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.45 E-value=1.3e-06 Score=83.69 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=75.9
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
...|..+..+|.+.|++++|+..+++.. ..| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3567778888888999999998888754 223 78899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHhc
Q 042265 458 NADRWEDVVK-IRRSLDA 474 (490)
Q Consensus 458 ~~g~~~~A~~-~~~~m~~ 474 (490)
+.|+++++.+ .+++|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988774 4555543
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=4e-07 Score=87.55 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=95.7
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 042265 352 VGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVE 429 (490)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~ 429 (490)
..+.+.|++++|.+.|+++.+. .+.+...+..+..+|.+.|++++|++.+++.. ..| +...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456778888888888888873 44567788888888899999999998888754 333 7889999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCChHHHHHHHHH
Q 042265 430 IAEAAAEHVMKLKPEDGGVYKVLADV--YANADRWEDVVKIRRS 471 (490)
Q Consensus 430 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 471 (490)
+|++.++++++..|++..++..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8889999999999883
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=1.3e-06 Score=67.19 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=87.6
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
+...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|+..++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45567788889999999999999998854 233 7889999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhcCC
Q 042265 457 ANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~~ 476 (490)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999987653
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=1.2e-06 Score=68.79 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCR 423 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~ 423 (490)
..+......+.+.|++++|...|++..+.....|+.. .....| +...|..+..++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-----------------------a~~~~~~~a~a~~n~g~al~ 68 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-----------------------AFDHAGFDAFCHAGLAEALA 68 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-----------------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-----------------------hhhhccchHHHHHHHHHHHH
Confidence 3444555566677788888888777776421112110 000000 3347888888888
Q ss_pred hcCCHHHHHHHHHHHHhh-------CCCCCchH----HHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 424 IHGNVEIAEAAAEHVMKL-------KPEDGGVY----KVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+.|++++|+..+++++++ +|++..+| +..+.++...|++++|+..|++..+
T Consensus 69 ~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 69 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888888888888888 99888888 8899999999999999999888753
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=9.2e-06 Score=77.19 Aligned_cols=161 Identities=7% Similarity=-0.168 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHhHHhh---CCCC-CchHH
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEA-RIKPDG----VTILGALVGCSHAGLVDEARKLFDEMESVY---GVSK-ELKHY 383 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~ 383 (490)
..++..|...|++++|.+.+.++... +..++. ...+.+-..+...|++++|..+++...... +..+ ...++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 44555555566666666555554431 011111 112222233445566677766666654321 1111 23355
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----Cch
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-------MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK---PED----GGV 448 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~~ 448 (490)
..+...|...|++++|..+++++. .++ ...++..++..|...|++++|..++++++... +.+ ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 566777777777777776665432 111 34566667777777777777777777776622 221 124
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 449 YKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+..++..+...|++++|...+.+..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555666667777777777665553
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.37 E-value=9e-07 Score=71.45 Aligned_cols=103 Identities=12% Similarity=-0.016 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC----------------CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYG----------------VSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
...+......+.+.|++++|...|.+...... .+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44566677778888888888888888876310 11123455666666666677777766666543
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 408 -MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 408 -~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
..| +...|..++.++...|++++|+..++++++++|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 222 566666666666677777777777777777666665
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=1.6e-06 Score=66.65 Aligned_cols=109 Identities=11% Similarity=-0.041 Sum_probs=67.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-----CC----HHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-----GD----VFVWS 416 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~ 416 (490)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++.... ++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444445555556666666666665552 2334455555555666666666666655553211 11 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
.+...+...|++++|...++++++..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 788888888888888888888888877 4556666655543
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.35 E-value=7.2e-05 Score=67.10 Aligned_cols=228 Identities=9% Similarity=0.023 Sum_probs=114.2
Q ss_pred hcCChh-HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 220 QSDQCE-EAIQLFCNMMDLDIKPDNI-ALVSALSACARLGE----------LEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 220 ~~g~~~-~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
+.|.++ +|+++++.++.. .|+.. .++.--..+...+. ++++..+++.+.... |-+..+|+--.-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444443 567777776654 33332 23332222222221 455666666666554 4555555555555
Q ss_pred HHhcC--CHHHHHHHHhccCC---CCeehHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc----
Q 042265 288 YAKCG--YINTAIEIFESSQE---KNLFTWNAMLVGLAMHGL-GRLSLVYFSRMIEARIKPDGVTILGALVGCSHA---- 357 (490)
Q Consensus 288 ~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---- 357 (490)
+.+.+ .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.++++++..+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 55555 36666666666553 244555555555556666 46777777777665432 444444443333322
Q ss_pred ----------CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc-----------CCHHHHHHHHhhCC-CCC-CHHH
Q 042265 358 ----------GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA-----------GLIEEALEMIKKMP-MGG-DVFV 414 (490)
Q Consensus 358 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~~-~~~~ 414 (490)
+.++++.+.+..... ..|-|...|+.+-..+.+. +.++++++.++++. ..| +...
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchH
Confidence 346666666666665 3444555555444444333 23455555554432 222 2222
Q ss_pred HHHHHH---HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 415 WSGLLG---GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 415 ~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
+..++. +....|..++....+.++.+++|....-|.-+.
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 222111 111345556666666666666666554444443
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=1.7e-06 Score=66.57 Aligned_cols=99 Identities=11% Similarity=-0.003 Sum_probs=64.6
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc---hHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-C---HHHHHHHHH
Q 042265 349 GALVGCSHAGLVDEARKLFDEMESVYGVSKEL---KHYGCMADLLGRAGLIEEALEMIKKMP-MGG-D---VFVWSGLLG 420 (490)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~ 420 (490)
.+...+...|++++|...|+.+.+. .+.+. ..+..+..++...|++++|...++++. ..| + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445566777788888877777763 22233 356666777777777777777776643 222 3 556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
++...|++++|+..++++++..|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 77777777777777777777777665433
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.31 E-value=5e-06 Score=76.02 Aligned_cols=129 Identities=8% Similarity=-0.124 Sum_probs=89.9
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD--------------GVTILGALVGCSHAGLVDEARKLFDEMESVYG 375 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 375 (490)
..+..+...+.+.|++++|+..|++......... ...+..+..++.+.|++++|...++++.+ -
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--L 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 3455555666666666666666666665422211 36777777788888888888888888887 3
Q ss_pred CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 042265 376 VSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIA-EAAAEHVMK 440 (490)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 440 (490)
.+.+...+..+..+|...|++++|...|++.. ..| +...+..+...+...|+.++| ...++++..
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888888887754 233 677788888888888888877 446666554
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=1.5e-06 Score=66.12 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=67.4
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH 425 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 425 (490)
..+...+.+.|++++|...++++.+ ..+.+...+..+..++...|++++|+..|++.. ..| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444556677778888877777776 344566677777777778888888888777643 233 677788888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCC
Q 042265 426 GNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~ 446 (490)
|++++|+..++++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888654
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.31 E-value=1.3e-06 Score=73.24 Aligned_cols=138 Identities=15% Similarity=-0.032 Sum_probs=87.9
Q ss_pred CCCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc----------------ccHHHH
Q 042265 57 TTDPLSYALSIFNNIPY---PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF----------------YSFPFL 117 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l 117 (490)
..|+++++.+.++.... .....+..+...+.+.|++++|+..|++..+.. +.+. ..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHH
Confidence 56788888888875432 245567788889999999999999999998753 1122 456666
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCHH
Q 042265 118 LRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDLA 194 (490)
Q Consensus 118 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 194 (490)
..++...|++++|...++..++.. +.+...+..+..++...|++++|...|++... | +...+..+..++...++.+
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777764 55666777777777777777777777776632 2 3344444444444444443
Q ss_pred HH
Q 042265 195 HA 196 (490)
Q Consensus 195 ~a 196 (490)
++
T Consensus 174 ~~ 175 (198)
T 2fbn_A 174 KK 175 (198)
T ss_dssp C-
T ss_pred HH
Confidence 33
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.30 E-value=6.6e-06 Score=63.14 Aligned_cols=91 Identities=13% Similarity=0.017 Sum_probs=63.2
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCCC-CC-CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHH
Q 042265 385 CMADLLGRAGLIEEALEMIKKMPM-GG-DV---FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED---GGVYKVLADVY 456 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 456 (490)
.+...+...|++++|...|+++.. .| +. ..+..+..++...|++++|+..++++++..|++ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 455666677777777777776432 22 22 466667777777777777777777777777777 55577777777
Q ss_pred HhcCChHHHHHHHHHHhcC
Q 042265 457 ANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~ 475 (490)
...|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777654
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.30 E-value=3e-06 Score=78.48 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=78.6
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
+...|..+..+|.+.|++++|++.+++.. ..| +...+..+..+|...|++++|+..+++++++.|++..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45677888889999999999999998854 334 7889999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHH
Q 042265 457 ANADRWEDVVKI 468 (490)
Q Consensus 457 ~~~g~~~~A~~~ 468 (490)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.29 E-value=1.9e-06 Score=66.27 Aligned_cols=97 Identities=10% Similarity=0.129 Sum_probs=84.7
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED-------GGVYK 450 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 450 (490)
...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|+..++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456778889999999999999998864 223 78889999999999999999999999999987766 67899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 451 VLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.++.++.+.|++++|.+.+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999988753
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=0.00014 Score=65.28 Aligned_cols=217 Identities=14% Similarity=0.042 Sum_probs=153.2
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHhccCC---CCeehHHHHHHHHH
Q 042265 255 RLGEL-EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY----------INTAIEIFESSQE---KNLFTWNAMLVGLA 320 (490)
Q Consensus 255 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 320 (490)
+.|.+ ++|......+...+ |-+..+|+.--..+...+. +++++.+++.+.. .+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44554 47899999998776 4555556554444433333 5778888877664 36678887777777
Q ss_pred HcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc-HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc----
Q 042265 321 MHG--LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL-VDEARKLFDEMESVYGVSKELKHYGCMADLLGRA---- 393 (490)
Q Consensus 321 ~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 393 (490)
..+ .+++++.+++++.+.... |...|+.-...+...|. ++++.+.++.+.+ ..+.|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhcc
Confidence 777 489999999999987533 66777766666667777 6899999999998 4566777777666665544
Q ss_pred ----------CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 394 ----------GLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH-----------GNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 394 ----------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
+.++++++.+++.. ..| |...|+-+-..+... +.++++++.++++++..|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 45788888887754 444 888887666665554 4578999999999999998853333
Q ss_pred HHHHH---HHhcCChHHHHHHHHHHhcC
Q 042265 451 VLADV---YANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 451 ~l~~~---~~~~g~~~~A~~~~~~m~~~ 475 (490)
.++.. ....|..+++...+.++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 33322 22467788899999888653
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=5.4e-06 Score=61.60 Aligned_cols=100 Identities=10% Similarity=-0.075 Sum_probs=76.5
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC--chhHHHH
Q 042265 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFIC--DVFVLNS 151 (490)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ 151 (490)
.+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 456677778888888888888888888887653 3345567777778888888888888888888764 44 5777788
Q ss_pred HHHHHHhc-CChHHHHHHHHhcccC
Q 042265 152 LMHVYCVF-HRLRDAQELFDEILYR 175 (490)
Q Consensus 152 li~~~~~~-g~~~~A~~~~~~~~~~ 175 (490)
+..++.+. |++++|.+.+++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 88888888 8888888888877543
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.26 E-value=6.4e-06 Score=65.90 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=74.2
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCCC----CC----CHHHH
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMPM----GG----DVFVW 415 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~ 415 (490)
..+...+...|++++|...+++..+.....++ ...+..+...+...|++++|.+.+++... .+ ....+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 33344444445555555554444332100011 12344455555555666655555554321 11 24456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 416 SGLLGGCRIHGNVEIAEAAAEHVMKLKPE------DGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 416 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
..+...+...|++++|...++++++..+. ...++..++.++...|++++|.+.+++..+
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67777788888888888888888773221 134677888888899999999998887654
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.26 E-value=2.4e-06 Score=68.83 Aligned_cols=92 Identities=12% Similarity=0.037 Sum_probs=58.5
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCCCC-------------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMPMG-------------------G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
......+.+.|++++|+..|++.... | +...|..+..++.+.|++++|+..++++++++|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 34555566666777666666553211 1 334566666666677777777777777777777
Q ss_pred CCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 444 EDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+++.+|..++.+|...|++++|...+++..+.
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76666777777777777777777766665543
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.25 E-value=1.8e-06 Score=79.08 Aligned_cols=147 Identities=11% Similarity=-0.013 Sum_probs=79.8
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 34556666667778888888888777664 343321 223344444332221 1367788899
Q ss_pred hhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH-HhcCChHHHH
Q 042265 390 LGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY-ANADRWEDVV 466 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 466 (490)
|.+.|++++|+..+++.. ..| +...|..+..+|...|++++|+..|+++++++|+++.++..+..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998754 233 8889999999999999999999999999999999998888888774 4556788888
Q ss_pred HHHHHHhcCC
Q 042265 467 KIRRSLDAGK 476 (490)
Q Consensus 467 ~~~~~m~~~~ 476 (490)
..|++|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8998887654
No 184
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=4.6e-06 Score=64.04 Aligned_cols=96 Identities=9% Similarity=-0.017 Sum_probs=55.2
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC--------CHHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG--------DVFVWSG 417 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~~ 417 (490)
+..+...+.+.|++++|+..|++..+ -.|.+...|..+..+|...|++++|++.+++... .| -..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 33344444455555555555555544 2233344445555555555555555555544321 00 1235667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
+..++...|++++|++.|+++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 778888899999999999999887774
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=0.00024 Score=67.26 Aligned_cols=162 Identities=9% Similarity=-0.139 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CChhh
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMMDLDI-KPDN----IALVSALSACARLGELEQGKNIHRYIELN----QIR-VDSFL 280 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 280 (490)
+..++..|...|++++|.+.+..+...-. .++. ...+.+...+...|+.+.+..++...... +.. .-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566666666666666666666543210 1111 11222233334556677777666665432 111 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC----C-----CeehHHHHHHHHHHcCChHHHHHHHHHHHHC--CC-CC-C--HH
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQE----K-----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA--RI-KP-D--GV 345 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~-~p-~--~~ 345 (490)
+..+...|...|++++|..+++++.. . ....+..++..|...|++++|...+++.... .. .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 56677777777777777777665431 1 1235666777777777777777777766532 11 11 1 23
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.+..+...+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455556666777788887777766654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=4.2e-05 Score=74.88 Aligned_cols=167 Identities=10% Similarity=-0.021 Sum_probs=125.6
Q ss_pred HHHHHHHhccCC---CCeehHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC--c
Q 042265 295 NTAIEIFESSQE---KNLFTWNAMLVGLAMHGL----------GRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG--L 359 (490)
Q Consensus 295 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~ 359 (490)
++|++.++++.. .+..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 344555554442 133345544444444444 78888888888876433 5667777667777778 7
Q ss_pred HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcC-CHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhc-----------
Q 042265 360 VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAG-LIEEALEMIKKMPMG-G-DVFVWSGLLGGCRIH----------- 425 (490)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------- 425 (490)
++++.+.++++.+ ..+.+...|+.-..++.+.| .++++++.++++... | +...|+.....+...
T Consensus 125 ~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 7999999999998 45667788888888888888 889999998886643 4 888888888776653
Q ss_pred ---CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHH
Q 042265 426 ---GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWED 464 (490)
Q Consensus 426 ---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (490)
+.++++++.+++++..+|++..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.19 E-value=6.4e-07 Score=67.80 Aligned_cols=84 Identities=24% Similarity=0.175 Sum_probs=67.2
Q ss_pred hcCCHHHHHHHHhhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 392 RAGLIEEALEMIKKMPMG----G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
..|++++|+..|++.... | +...+..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888876544 4 66778888888999999999999999999999999889999999999999999999
Q ss_pred HHHHHHhcC
Q 042265 467 KIRRSLDAG 475 (490)
Q Consensus 467 ~~~~~m~~~ 475 (490)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998887654
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.18 E-value=1e-05 Score=59.06 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
++..+..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778888888888899999999999999999998888889999999999999999988887764
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=1.2e-05 Score=76.87 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=97.5
Q ss_pred HhhccCcHHHHHHHHHHhHHhhC--CCC----CchHHHHHHhhhhhcCCHHHHHHHHhhCC---------CCC-CHHHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYG--VSK----ELKHYGCMADLLGRAGLIEEALEMIKKMP---------MGG-DVFVWS 416 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~ 416 (490)
.+..+|++++|+.++++..+... +.+ ...+++.|..+|...|++++|..++++.. .+| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999998888766421 222 23567888999999999999988887642 233 456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCCch---HHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMK-----LKPEDGGV---YKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.|...|..+|++++|+.+++++++ +.|+++.+ ...+..++...|++++|..++++++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 67888754 4577788889999999999999998643
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=9.3e-06 Score=64.90 Aligned_cols=131 Identities=11% Similarity=-0.013 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPD----GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKH 382 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 382 (490)
+..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+.....++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444555555556665555555443210 011 134555666666777777777777766543111111 334
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhhCC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 383 YGCMADLLGRAGLIEEALEMIKKMP----MGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
+..+...+...|++++|.+.+++.. ..+ ....+..+...+...|++++|.+.++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666677777777777777776543 111 34567778888899999999999999988743
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=2.5e-05 Score=60.83 Aligned_cols=112 Identities=8% Similarity=-0.138 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEA 433 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 433 (490)
+++++|.+.|++..+. + .+. .. |...|...+.+++|.++|++....+++..+..+...|.. .+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4566666666666653 3 222 22 555666666666677666665555666666667766666 667777777
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHhcCCC
Q 042265 434 AAEHVMKLKPEDGGVYKVLADVYAN----ADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 477 (490)
+++++.+. .++.++..|+..|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777664 344566777777776 6677777777777666653
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=6.1e-07 Score=66.99 Aligned_cols=93 Identities=11% Similarity=0.000 Sum_probs=73.8
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED------GGVYK 450 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 450 (490)
+...+..+...+...|++++|.+.+++.. ..| +...+..+..++...|++++|+..++++++..|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34556677777888888888888887753 233 78888899999999999999999999999999998 66778
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 042265 451 VLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~ 471 (490)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877777655543
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.10 E-value=5.4e-06 Score=65.14 Aligned_cols=116 Identities=14% Similarity=0.006 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C-----CH-----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIK-P-----DG-----VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE 379 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p-----~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 379 (490)
.+......+.+.|++++|+..|++.++.... | +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l------ 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY------ 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 4556677788999999999999999885322 1 11 14555555555555555555555554431
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhh-CCCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKK-MPMGG-DVFVW----SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
|++ ....| +...| .....++...|++++|+..|++++++.|.+......+.
T Consensus 87 -----------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 87 -----------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp -----------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred -----------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 111 12244 56677 88999999999999999999999999999887665554
Q ss_pred HH
Q 042265 454 DV 455 (490)
Q Consensus 454 ~~ 455 (490)
.+
T Consensus 144 ~~ 145 (159)
T 2hr2_A 144 RM 145 (159)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.07 E-value=9.5e-06 Score=74.21 Aligned_cols=152 Identities=13% Similarity=-0.043 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 357 (490)
...+..+...+.+.|++++|...|++....++... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34577788889999999999999998664322211 1222333333332221 13677788888999
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHH-HHhcCCHHHHHHH
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGG-CRIHGNVEIAEAA 434 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~-~~~~~~~~~a~~~ 434 (490)
|++++|...++++.+ ..+.+...+..+..+|...|++++|...|++... .| +...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 3456778888999999999999999999998753 34 55566666655 3455677888999
Q ss_pred HHHHHhhCCCCC
Q 042265 435 AEHVMKLKPEDG 446 (490)
Q Consensus 435 ~~~~~~~~p~~~ 446 (490)
++++....|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888765
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.03 E-value=2.2e-05 Score=58.82 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=38.4
Q ss_pred HHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 363 ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
|...|++..+ ..+.+...+..+...|...|++++|...+++.. ..| +...|..+..++...|++++|+..++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444 223344445555555555555555555554432 112 444555555555555555555555555555
Q ss_pred hCC
Q 042265 441 LKP 443 (490)
Q Consensus 441 ~~p 443 (490)
..|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 444
No 196
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.01 E-value=8.8e-06 Score=78.18 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
+.+.|++++|.+.|++..+ .+...|..+..++.+.|++++|++.+++..+... .+...+..+..++...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444555555555544332 1334444455555555555555555555544321 13344444444455555555555
Q ss_pred HHHHHhHH
Q 042265 365 KLFDEMES 372 (490)
Q Consensus 365 ~~~~~~~~ 372 (490)
+.|+++.+
T Consensus 95 ~~~~~al~ 102 (477)
T 1wao_1 95 RDYETVVK 102 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.01 E-value=1.3e-05 Score=56.96 Aligned_cols=81 Identities=15% Similarity=0.227 Sum_probs=60.5
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|+..++++++..|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3455566667777777777777776643 222 67777888888888888999999999988888888888888888776
Q ss_pred hcC
Q 042265 458 NAD 460 (490)
Q Consensus 458 ~~g 460 (490)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=1.5e-05 Score=73.82 Aligned_cols=113 Identities=5% Similarity=-0.066 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGC 422 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~ 422 (490)
...+..+...+.+.|++++|...|+++.+.. +. .. .....+++. ...| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~------~~----~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG------SR----AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH------HH----HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc------Cc----cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456666677777888888888887776621 00 00 000111111 0112 667889999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+.|++++|+..++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998765
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.97 E-value=3.8e-06 Score=65.84 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=64.6
Q ss_pred hcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 392 RAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGN----------VEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
+.+++++|.+.+++.. ..| ++..|..+..++...++ +++|+..|+++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4445566666665533 233 66666666666665554 57999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHhcCC
Q 042265 460 D-----------RWEDVVKIRRSLDAGK 476 (490)
Q Consensus 460 g-----------~~~~A~~~~~~m~~~~ 476 (490)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999987653
No 200
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.96 E-value=1e-07 Score=87.06 Aligned_cols=251 Identities=12% Similarity=0.063 Sum_probs=182.4
Q ss_pred ChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHH
Q 042265 60 PLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLK 139 (490)
Q Consensus 60 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 139 (490)
++++|.+..++... +..|..|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-..++....+
T Consensus 40 ~ldRa~eyA~~~n~--p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCC--CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCC--ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34444444444433 467999999999999999998766332 3677899999999999999999998887766
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC---------------
Q 042265 140 LGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP--------------- 204 (490)
Q Consensus 140 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------- 204 (490)
.. .++.+=+.|+-+|++.++..+..+++ ..|+......+.+-|...|.++.|.-+|..+.
T Consensus 112 ~~--ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 112 KA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp TC--CSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred Hh--cccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 53 44455568999999999987654443 33666667788888999999999988887764
Q ss_pred ---------CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 042265 205 ---------FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR 275 (490)
Q Consensus 205 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 275 (490)
..++.||-.+-.+|...+.+.-|.-.--.++- .|| ....++..|.+.|.+++-+.+++.-.... .
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 12788999999999999998877655444432 222 12345666788899999888888776543 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhccCC----C-------CeehHHHHHHHHHHcCChHHHHH
Q 042265 276 VDSFLSTGLVDFYAKCGYINTAIEIFESSQE----K-------NLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 276 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
....+|+.|.-.|++- ++++..+.++..-. | ....|.-++-.|.+-.+++.|..
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 6778888888888875 56666666654332 2 44578888888888888887654
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.93 E-value=5.8e-05 Score=53.84 Aligned_cols=71 Identities=10% Similarity=0.041 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCc
Q 042265 411 DVFVWSGLLGGCRIHGN---VEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAG 482 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 482 (490)
++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+.... +|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 77788888888765544 699999999999999999999999999999999999999999999988655 554
No 202
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.88 E-value=0.00011 Score=70.07 Aligned_cols=121 Identities=9% Similarity=-0.125 Sum_probs=71.6
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD--------------NIALVSALSACARLGELEQGKNIHRYIELNQ 273 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 273 (490)
...|..+...+.+.|++++|+..|++.++...... ...|..+..++.+.|++++|...++++.+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44677788888888888888888888876421111 3556666666666666666666666666654
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHH
Q 042265 274 IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSL 329 (490)
Q Consensus 274 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 329 (490)
+.+...+..+..+|...|++++|+..|+++.+- +...+..+..++...++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554431 3344444555555544444443
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.00027 Score=54.90 Aligned_cols=112 Identities=11% Similarity=-0.066 Sum_probs=94.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh----cCCHHH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR----AGLIEE 398 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 398 (490)
+++++|.+.|++..+.| .|... +...|...+.+++|.++|++..+. .++.....|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 34443 667777888899999999999884 456777788888887 899999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 443 (490)
|.++|++....+++..+..+...|.. .++.++|..+++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998777899999999999998 8999999999999988643
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=8.6e-05 Score=54.92 Aligned_cols=66 Identities=8% Similarity=-0.036 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788889999999999999999999999999999999999999999999999999999988654
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00016 Score=69.16 Aligned_cols=127 Identities=8% Similarity=-0.058 Sum_probs=67.1
Q ss_pred HHhcCChhHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCChhhHHHHH
Q 042265 218 YAQSDQCEEAIQLFCNMMDL---DIKP----DNIALVSALSACARLGELEQGKNIHRYIELN-----QIRVDSFLSTGLV 285 (490)
Q Consensus 218 ~~~~g~~~~A~~~~~~m~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 285 (490)
+..+|++++|+.++++.++. -+.| ...+++.|..+|...|++++|..++++.++. | +..+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~------ 391 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-HNNAQ------ 391 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-TTCHH------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-CCCHH------
Confidence 44567777777777665442 1111 1235566666666666666666666655432 1 11110
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHhhccC
Q 042265 286 DFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIE-----ARI-KPD-GVTILGALVGCSHAG 358 (490)
Q Consensus 286 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~g 358 (490)
-..+++.|...|...|++++|+.++++..+ .|. .|+ ..+...+-.++...+
T Consensus 392 ----------------------~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 392 ----------------------LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 012344445555555555555555544432 221 121 234455556666778
Q ss_pred cHHHHHHHHHHhHHh
Q 042265 359 LVDEARKLFDEMESV 373 (490)
Q Consensus 359 ~~~~a~~~~~~~~~~ 373 (490)
.+++|+..|.++.+.
T Consensus 450 ~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 450 MFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887663
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.75 E-value=3.2e-05 Score=60.66 Aligned_cols=109 Identities=9% Similarity=0.046 Sum_probs=64.5
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC----------HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL----------IEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH 425 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 425 (490)
+.+++|.+.++...+ -.+.+...|..+..++...++ +++|+..|++.. ..| +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445555555555554 233344555555555554443 346666666533 233 666777777777665
Q ss_pred -----------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 426 -----------GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 426 -----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|++++|++.|+++++++|++. .|...+.. .++|.++.-.+...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHHHHHHHS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhccCccccc
Confidence 589999999999999999986 44333222 24455554444443
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.73 E-value=0.00012 Score=51.76 Aligned_cols=65 Identities=12% Similarity=0.244 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+...+..+...+...|++++|+..++++++..|.++.++..++.++.+.|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678888889999999999999999999999999999999999999999999999999998765
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=0.0004 Score=67.95 Aligned_cols=150 Identities=9% Similarity=-0.033 Sum_probs=120.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc----------HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL----------VDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
...++|++.++++...... +...|+.--..+...|+ ++++.+.++.+.+ ..+.+..+|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3456789999999986322 34455555555555565 8999999999998 566778888888888888
Q ss_pred cC--CHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc--------
Q 042265 393 AG--LIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHG-NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA-------- 459 (490)
Q Consensus 393 ~g--~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 459 (490)
.| +++++++.++++.. .| +...|+.-...+.+.| .++++++.++++++.+|.+..+|+..+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 89 77999999998752 23 8999999888888889 899999999999999999999999999998874
Q ss_pred ------CChHHHHHHHHHHhcC
Q 042265 460 ------DRWEDVVKIRRSLDAG 475 (490)
Q Consensus 460 ------g~~~~A~~~~~~m~~~ 475 (490)
++++++.+.+++....
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhh
Confidence 5578898888877653
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.67 E-value=9.9e-05 Score=55.18 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=52.2
Q ss_pred HHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 399 ALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 399 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
|++.|++.. ..| +...+..+...+...|++++|+..++++++.+|++..++..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444432 223 6667777777777777777777777777777777777777777777777777777777776654
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.47 E-value=0.00034 Score=65.70 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHhhCC---------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCCc---hHHHHHH
Q 042265 393 AGLIEEALEMIKKMP---------MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK-----LKPEDGG---VYKVLAD 454 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~---------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 454 (490)
.|++++|..++++.. .+| -..+++.++.+|...|++++|+.+++++++ ..|+++. +++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 466777776665431 122 346788888889999999999999999887 5566654 5778899
Q ss_pred HHHhcCChHHHHHHHHHHhc
Q 042265 455 VYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 455 ~~~~~g~~~~A~~~~~~m~~ 474 (490)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999887653
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.42 E-value=0.00016 Score=52.22 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=59.0
Q ss_pred HHhhhhhcCCHHHHHHHHhhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 386 MADLLGRAGLIEEALEMIKKMP-MGG-DVF-VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
....+.+.|++++|.+.+++.. ..| +.. .+..+..++...|++++|+..++++++.+|++..++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4556677888888888887754 233 667 88888888999999999999999999999998866632 445
Q ss_pred HHHHHHHHHH
Q 042265 463 EDVVKIRRSL 472 (490)
Q Consensus 463 ~~A~~~~~~m 472 (490)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5566555544
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.42 E-value=0.00047 Score=64.81 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=61.2
Q ss_pred hhhhhcCCHHHHHHHHhhCCC---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCCc---hH
Q 042265 388 DLLGRAGLIEEALEMIKKMPM---------GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK-----LKPEDGG---VY 449 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~ 449 (490)
..+.+.|++++|+.++++... +| ...+++.++..|...|++++|+.+++++++ ..|+++. ++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334466777777777765321 11 345677888888888888888888888876 4555553 57
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 042265 450 KVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+.|+.+|...|++++|..++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 788888888888888888887765
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.40 E-value=0.00043 Score=49.89 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=54.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCc-hHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGG-VYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+..+...|++++|+..++++++..|+++. ++..++.+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456688899999999999999999999998 99999999999999999999999987654
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.22 E-value=0.00045 Score=63.62 Aligned_cols=144 Identities=10% Similarity=0.002 Sum_probs=111.7
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY 112 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 112 (490)
..|.+|+.|...+. +.|.+.+|+..|=+. .|+..|..+|.+..+.|.+++-+..+.-.++.. -++.
T Consensus 52 n~p~VWs~LgkAqL----------~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~ 117 (624)
T 3lvg_A 52 NEPAVWSQLAKAQL----------QKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESY 117 (624)
T ss_dssp CCCCCSSSHHHHTT----------TSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTT
T ss_pred CCccHHHHHHHHHH----------ccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccc
Confidence 57889999999999 889999998877554 456788999999999999999999988777653 3444
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc--------------------
Q 042265 113 SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEI-------------------- 172 (490)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------------- 172 (490)
.=+.|+-+|++.++..+.++++. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 118 IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 118 VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp TTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSST
T ss_pred cHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 55789999999998877655432 466666777888888888888888887766
Q ss_pred ----ccCCchhHHHHHHHHHhcCCHHHHH
Q 042265 173 ----LYRDVVSCNTLIDGYVKAGDLAHAR 197 (490)
Q Consensus 173 ----~~~~~~~~~~l~~~~~~~~~~~~a~ 197 (490)
...++.+|..+-.+|...+.+.-|.
T Consensus 191 daArKAns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 191 DGARKANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp TTTTTCCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHHhcCChhHHHHHHHHHhCchHHHHHH
Confidence 1126778998888888777665543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.0012 Score=62.00 Aligned_cols=93 Identities=13% Similarity=-0.047 Sum_probs=70.3
Q ss_pred ccCcHHHHHHHHHHhHHhh--CCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCC---------CCC-CHHHHHHHH
Q 042265 356 HAGLVDEARKLFDEMESVY--GVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMP---------MGG-DVFVWSGLL 419 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~l~ 419 (490)
..|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|..++++.. .+| ...+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888888776531 12222 3567888888888999999888887642 233 456789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----hCCCCCch
Q 042265 420 GGCRIHGNVEIAEAAAEHVMK-----LKPEDGGV 448 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 448 (490)
..|..+|++++|+.+++++++ ..|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999988 67888743
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.18 E-value=0.037 Score=56.90 Aligned_cols=165 Identities=16% Similarity=0.062 Sum_probs=106.6
Q ss_pred HhccCCcHHHHH-HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHH
Q 042265 121 CSQLCSHSLAQT-IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQL 199 (490)
Q Consensus 121 ~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 199 (490)
....++++.|.+ ++.. + ++......++..+.+.|..+.|+++.+.- ..-.......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHH
Confidence 344677777765 4311 1 11223367777788888888888765321 1223445678999999998
Q ss_pred HhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChh
Q 042265 200 FDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSF 279 (490)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 279 (490)
.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++.+.....|.
T Consensus 675 ~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----- 738 (814)
T 3mkq_A 675 LTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK----- 738 (814)
T ss_dssp HTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----
T ss_pred HHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-----
Confidence 87764 567899999999999999999999988743 33455555557777776666655555441
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHH
Q 042265 280 LSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSR 334 (490)
Q Consensus 280 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 334 (490)
++....+|.+.|++++|.+++. +.+++++|..+-+.
T Consensus 739 -~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 739 -FNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 2334445666777777766554 45666666665443
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.11 E-value=0.0014 Score=47.34 Aligned_cols=61 Identities=15% Similarity=0.012 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.+..+...+...|++++|+..|++..+.... +...|..+..++...|++++|.+.|++..+
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444444444444444444443211 233444444444445555555554444443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.07 E-value=0.004 Score=58.49 Aligned_cols=100 Identities=14% Similarity=-0.024 Sum_probs=75.9
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhh--CCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCC---------CCC-CHHH
Q 042265 351 LVGCSHAGLVDEARKLFDEMESVY--GVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMP---------MGG-DVFV 414 (490)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~ 414 (490)
+..+...|++++|+..+++..+.. -+.|+ ..+++.++.+|...|++++|+.++++.. .+| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567789999999988887531 12232 3467888888999999999988887642 233 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCCchHH
Q 042265 415 WSGLLGGCRIHGNVEIAEAAAEHVMK-----LKPEDGGVYK 450 (490)
Q Consensus 415 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 450 (490)
++.+...|...|++++|+.+++++++ ..|+++.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88999999999999999999999988 6888875443
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.04 E-value=0.0053 Score=55.37 Aligned_cols=64 Identities=11% Similarity=0.008 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++.++..+...+...|++++|+..+++++.++|+ ...|..++.++.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5555555555555556666666666666665543 334455566666666666666666555443
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.92 E-value=0.02 Score=51.61 Aligned_cols=75 Identities=15% Similarity=0.022 Sum_probs=62.0
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
..+.++..|..+...+...|++++|...++++. ..|+...|..+...+.-.|++++|.+.++++..++|..+ +|.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 346677788888777777899999999998854 346777887888889999999999999999999999765 544
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.79 E-value=0.0042 Score=53.65 Aligned_cols=87 Identities=16% Similarity=0.070 Sum_probs=61.4
Q ss_pred HHHHHHHhhCC-CCC---CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHhc-CChHHH
Q 042265 397 EEALEMIKKMP-MGG---DVFVWSGLLGGCRI-----HGNVEIAEAAAEHVMKLKPED-GGVYKVLADVYANA-DRWEDV 465 (490)
Q Consensus 397 ~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 465 (490)
..|...+++.. ..| +...|..++..|.. -|+.++|.++|+++++++|+. ..++...+..++.. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 44555555532 233 35566677777776 388888888888888888864 78888888888774 888888
Q ss_pred HHHHHHHhcCCCCCCCce
Q 042265 466 VKIRRSLDAGKIKKNAGC 483 (490)
Q Consensus 466 ~~~~~~m~~~~~~~~~~~ 483 (490)
.+.+++..+.....+|+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 888888887766655553
No 222
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.78 E-value=0.46 Score=46.55 Aligned_cols=114 Identities=11% Similarity=-0.069 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVT----ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
.+.+.|...+........ .+... ...+.......+...++...+...... ..+.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 477888888877765332 22222 222333334445344555555554332 2333333344444556788888
Q ss_pred HHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 399 ALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 399 A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
|...|+.|...+ ...-..=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888887543 344344456667778888888888888865
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.77 E-value=0.0049 Score=44.83 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=50.2
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP---------MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
..+...+.+.|+++.|..+|+... ..+...++..+..++.+.|+++.|...++++++..|+++.+...+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 345555555555555555554422 1125678889999999999999999999999999999986655543
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.76 E-value=0.0048 Score=47.74 Aligned_cols=90 Identities=13% Similarity=-0.032 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcC---CHHHHHHHHhhCCCC--C--CHHHHHHHHHHHHhcCCHHHH
Q 042265 359 LVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAG---LIEEALEMIKKMPMG--G--DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a 431 (490)
....+++-|.+..+ .-+++..+...+..++++.+ +.++++.+|+++... | ....+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34455555555544 23356666666666676666 455677776664422 2 345667778889999999999
Q ss_pred HHHHHHHHhhCCCCCchHH
Q 042265 432 EAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~ 450 (490)
.+.++.+++.+|++..+..
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 9999999999998874443
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.63 E-value=0.059 Score=55.42 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=83.8
Q ss_pred HHHHhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 216 AGYAQSDQCEEAIQ-LFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 216 ~~~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 33445666776655 3311 1 1122235555666666777776655421 11 112334567788
Q ss_pred HHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh
Q 042265 295 NTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVY 374 (490)
Q Consensus 295 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (490)
+.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~- 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT- 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 88888776653 456788888888888888888888877642 223333344455555544444443332
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKM 406 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (490)
+ .++....+|.+.|++++|.+++.++
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 1223333445556666665555443
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.57 E-value=0.15 Score=38.07 Aligned_cols=141 Identities=9% Similarity=-0.001 Sum_probs=101.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+.+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34568888888888877763 355667777776666677777777777776533222 3444444
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
....+-.+.. +....+..+..+..+|+-+.-.+++..++.-.|.++.....++.+|.+.|+..+|.+++++.-+.|++
T Consensus 80 Vi~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4444444332 44556667778889999999999999987777777889999999999999999999999999988875
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.56 E-value=0.0037 Score=48.41 Aligned_cols=80 Identities=10% Similarity=-0.097 Sum_probs=64.7
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCCchHHHHHHHHHhcCChHHHHHH
Q 042265 396 IEEALEMIKKMP--MGGDVFVWSGLLGGCRIHG---NVEIAEAAAEHVMKLK-P-EDGGVYKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 396 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (490)
...+.+.|.+.. ..++..+...+..++.+.+ +.++++.+++...+.+ | ++...++.|+.+|.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344455554432 2348899999999999988 6679999999999987 7 5677899999999999999999999
Q ss_pred HHHHhcC
Q 042265 469 RRSLDAG 475 (490)
Q Consensus 469 ~~~m~~~ 475 (490)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998754
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.43 E-value=0.026 Score=39.83 Aligned_cols=70 Identities=9% Similarity=-0.073 Sum_probs=54.7
Q ss_pred CCCchHHHHHHhhhhhcCC---HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 377 SKELKHYGCMADLLGRAGL---IEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+.++..+..+..++...++ .++|..++++.. ..| ++.....+...+.+.|++++|+..|+++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4566677777777754444 688888888754 333 888888889999999999999999999999888844
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.38 E-value=0.014 Score=42.28 Aligned_cols=65 Identities=9% Similarity=-0.060 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK-------PEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++.-...++..+.+.|+++.|+..++++++.. +....++..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34556778888999999999999999999832 234567899999999999999999999988754
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.34 Score=38.44 Aligned_cols=98 Identities=10% Similarity=0.112 Sum_probs=46.5
Q ss_pred hcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 042265 189 KAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRY 268 (490)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 268 (490)
+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.++...+-+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 344555554444433 2344566666666666666666666655432 22333334445555554444444
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 042265 269 IELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFES 303 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 303 (490)
....| -++.....+.-.|+++++.++|.+
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43333 123333334445555555555543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.91 E-value=0.094 Score=38.94 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH---HHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHH
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE---ALEMIKKMPMGG----DVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 430 (490)
.....+.+-|.+.... +. ++..+--.+..++.+.....+ ++.+++++.... .......+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445555666655553 33 666666667777777776665 777887765443 23445567778999999999
Q ss_pred HHHHHHHHHhhCCCCCchHH
Q 042265 431 AEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 431 a~~~~~~~~~~~p~~~~~~~ 450 (490)
|.+.++.+++..|++..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999875543
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.85 E-value=0.38 Score=35.93 Aligned_cols=147 Identities=11% Similarity=-0.073 Sum_probs=93.2
Q ss_pred cHHHHHHH--HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC-CchhHHHHHHHHHh
Q 042265 113 SFPFLLRA--CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR-DVVSCNTLIDGYVK 189 (490)
Q Consensus 113 ~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~ 189 (490)
+...|+.+ ..-.|..++..++..+...+. +..-+|-+|--....-+-+-..++++.+-+. |. ..
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~ 73 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DK 73 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GG
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------Hh
Confidence 34444444 234467777777766666532 3344444444444445555555555554222 21 23
Q ss_pred cCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 042265 190 AGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYI 269 (490)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 269 (490)
+|++......+-.+.. +....+..+.....+|.-++-.+++.++... .+|++.....+..+|.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4555555555555432 4556677778888889999888888886543 4778888888889999999999999999888
Q ss_pred HHcCC
Q 042265 270 ELNQI 274 (490)
Q Consensus 270 ~~~~~ 274 (490)
.+.|+
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 88875
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.064 Score=53.55 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
-...|...|+++.|+.+.++++..-|.+..+|..|+.+|...|+|+.|+-.+..+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445778899999999999999999999999999999999999999999999887
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.96 Score=35.87 Aligned_cols=44 Identities=14% Similarity=0.343 Sum_probs=21.4
Q ss_pred hcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHH
Q 042265 290 KCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRM 335 (490)
Q Consensus 290 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 335 (490)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344455554444433 23344555555555555555555555443
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.70 E-value=4.4 Score=41.51 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcc
Q 042265 149 LNSLMHVYCVFHRLRDAQELFDEIL 173 (490)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~~~~~~~ 173 (490)
|..+++++.+.++.+.+.++|.++.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666677777777777777764
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.70 E-value=0.067 Score=49.41 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc-----CCCCCCCce
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA-----GKIKKNAGC 483 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 483 (490)
....++..+...|++++++..++.+...+|-+...+..++.+|.+.|+..+|.+.|+++.+ .|+.|.|.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455677788899999999999999999999988999999999999999999999988753 488887754
No 237
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.52 E-value=1.6 Score=35.58 Aligned_cols=158 Identities=12% Similarity=-0.005 Sum_probs=74.8
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
...+...--.+++.+..++...-...+..+.+.+..+....+.+.+ . .++...-...+.++...++.+.. ..+..
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~ 83 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAV-EPLIK 83 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGH-HHHHH
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHH-HHHHH
Confidence 4444455555555556666666666667776666544333333333 2 24444444455555555544332 22222
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHH
Q 042265 137 VLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVA 216 (490)
Q Consensus 137 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 216 (490)
+.. .++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+....+...+..++...-...+.
T Consensus 84 ~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~ 160 (201)
T 3ltj_A 84 ALK---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 160 (201)
T ss_dssp HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 35555666666666666654433333343344444444444555554444333333333333333333333333
Q ss_pred HHHhcC
Q 042265 217 GYAQSD 222 (490)
Q Consensus 217 ~~~~~g 222 (490)
++.+.|
T Consensus 161 aL~~~~ 166 (201)
T 3ltj_A 161 ALGEIG 166 (201)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 333333
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.29 E-value=0.08 Score=39.33 Aligned_cols=67 Identities=12% Similarity=-0.119 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 409 GGDVFVWSGLLGGCRIHGNVEI---AEAAAEHVMKLK-P-EDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.++..+-..+..++.+..+... ++.+++...+.. | ........|+.++.+.|+|++|.+.++.+.+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3578888889999999887766 899999988866 5 45567889999999999999999999988754
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.65 Score=43.65 Aligned_cols=248 Identities=10% Similarity=0.027 Sum_probs=130.6
Q ss_pred CChhHHHHhhccCC---------CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhC-CCCCCcccHHHHHHHH----hcc
Q 042265 59 DPLSYALSIFNNIP---------YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTV-SIPPDFYSFPFLLRAC----SQL 124 (490)
Q Consensus 59 g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~----~~~ 124 (490)
|+++.|++.+-.+. .........++..+...|+++...+.+..+.+. |..+. ....+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 66777777663332 123445667888888888888887777666543 32221 222333322 222
Q ss_pred CCcHHHH--HHHHHHHH--hC-CCC---chhHHHHHHHHHHhcCChHHHHHHHHhccc----C-----CchhHHHHHHHH
Q 042265 125 CSHSLAQ--TIHSQVLK--LG-FIC---DVFVLNSLMHVYCVFHRLRDAQELFDEILY----R-----DVVSCNTLIDGY 187 (490)
Q Consensus 125 ~~~~~a~--~~~~~~~~--~g-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~l~~~~ 187 (490)
...+... .+.+.+.. .| +.. .......|...+...|++.+|..++..+.. . -...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222211 11111100 11 111 122345677888888888888888888732 1 123566677778
Q ss_pred HhcCCHHHHHHHHhhCCC-----C-C----eehHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHH----HHHHH
Q 042265 188 VKAGDLAHARQLFDRMPF-----R-D----AVSWGTLVAGYAQSDQCEEAIQLFCNMMDL-DIKPDNIALV----SALSA 252 (490)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~-----~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~----~l~~~ 252 (490)
...+|+..|..++.++.. + + ...+...+..+...+++.+|.+.|.+..+. ....|...+. .++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 888888888887776531 1 1 234566677777888888888877776542 1111222111 11111
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CCHHHHHHHHhccCCCC
Q 042265 253 CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC--GYINTAIEIFESSQEKN 308 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~ 308 (490)
..-.+....-..+.........-++...+..++.+|... .+++...+.|+....++
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 111111111122222222222234566777777777654 45677777777655543
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.70 E-value=0.46 Score=36.31 Aligned_cols=110 Identities=9% Similarity=0.018 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHhhccCcH------HHHHHHHHHhHHhhCCCCCchH-HHHHHh------hhhhcCCHHHHHHHHhhCC--
Q 042265 343 DGVTILGALVGCSHAGLV------DEARKLFDEMESVYGVSKELKH-YGCMAD------LLGRAGLIEEALEMIKKMP-- 407 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~g~~~~A~~~~~~~~-- 407 (490)
|..+|-..+....+.|++ ++..++|+++.. .++|+... +...+. .+...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555555555555555 566666666666 45554311 111111 1123367777777776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 408 MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
.+.-+..|-.....-.++|+.+.|.+++.+++...|.+...+...+.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 22246677777777788999999999999999988876655554443
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.42 E-value=0.5 Score=40.88 Aligned_cols=65 Identities=14% Similarity=0.011 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHcCC
Q 042265 210 SWGTLVAGYAQS-----DQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL-GELEQGKNIHRYIELNQI 274 (490)
Q Consensus 210 ~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 274 (490)
.|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+.+.+.+++......
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 455555555552 55666666666555532111244444455555543 555555555555555543
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.38 E-value=0.62 Score=35.62 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=74.8
Q ss_pred CCCCcccHHHHHHHHHcCCCc------hhHHHHHHHhhhCCCCCCcc-cHHHHHHH------HhccCCcHHHHHHHHHHH
Q 042265 72 PYPSTFSYNTIIRAHTLFSSP------LNAVVLFSQMRTVSIPPDFY-SFPFLLRA------CSQLCSHSLAQTIHSQVL 138 (490)
Q Consensus 72 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~ 138 (490)
.+.|..+|-..+..+-+.|++ ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356788999999998888999 8899999988874 566542 22222211 123379999999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 042265 139 KLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY 174 (490)
Q Consensus 139 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 174 (490)
+.+ +.=..+|......-.+.|++..|.+++.+...
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 763 33377888888888899999999999988744
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.01 E-value=0.5 Score=33.10 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+ ..+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 44566777777878889999999999999999999999999999999885 33345567776653
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.47 E-value=1.6 Score=33.10 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=48.1
Q ss_pred CCCchHHHHHHhhhhhcCCHH---HHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 042265 377 SKELKHYGCMADLLGRAGLIE---EALEMIKKMP-MGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 448 (490)
.|+..+--.+..++.+....+ +++.+++++. ..| .......+.-++.+.|++++|.++.+.+++..|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 466666666667777666554 4666666643 222 33445556677888888888888888888888887633
No 245
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=92.45 E-value=3.8 Score=33.53 Aligned_cols=121 Identities=14% Similarity=-0.015 Sum_probs=48.0
Q ss_pred HHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCC
Q 042265 64 ALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFI 143 (490)
Q Consensus 64 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 143 (490)
...+.+.+..++...-...+..+.+.|..+....+ ..+... +|...-...+.++...++.+.. ..+..+.. .
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L-~~~l~~---~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~ 92 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL-IKALKD---EDAWVRRAAADALGQIGDERAV-EPLIKALK---D 92 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHH-HHHTTC---SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHH-HHHHcC---CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---C
Confidence 33333444445544444555555555543322222 222221 3443334444444444433222 22222221 3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCC
Q 042265 144 CDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGD 192 (490)
Q Consensus 144 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (490)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.++
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 4444444455555555443333333333333344343344444444443
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.92 E-value=11 Score=38.63 Aligned_cols=263 Identities=12% Similarity=0.007 Sum_probs=128.5
Q ss_pred HHcCCCchhHHHHHHHhhhCCCCCCccc--HHHHHHHHhccCCcHHHHHHHHHHHHhCC-------CCchhHHHHHHHHH
Q 042265 86 HTLFSSPLNAVVLFSQMRTVSIPPDFYS--FPFLLRACSQLCSHSLAQTIHSQVLKLGF-------ICDVFVLNSLMHVY 156 (490)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-------~~~~~~~~~li~~~ 156 (490)
....|+.++++.++......+...+... =..+.-+....|..+.+..++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456666667666655443210112111 11222233445555567776666554321 01111222233333
Q ss_pred HhcCC-hHHHHHHHHhccc-CCchh--HH--HHHHHHHhcCCHHHHHHHHhhCCCC-Ceeh--HHHHHHHHHhcCChhHH
Q 042265 157 CVFHR-LRDAQELFDEILY-RDVVS--CN--TLIDGYVKAGDLAHARQLFDRMPFR-DAVS--WGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 157 ~~~g~-~~~A~~~~~~~~~-~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~l~~~~~~~g~~~~A 227 (490)
+-.|. -+++.+.+..+.. .+..+ .. ++...+.-.|+-+....++..+.+. +... ...+.-++...|+.+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 33343 2345555555443 33221 11 2233344567777666666654322 2222 23334445577888888
Q ss_pred HHHHHHHHhCCCCCCHHHHH---HHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 228 IQLFCNMMDLDIKPDNIALV---SALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
..+.+.+.... .|. .-|. .+.-+|+-.|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+
T Consensus 544 ~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 544 DDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp HHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 88888877632 222 2232 33446677888877777888877653 223332233333444466666677777655
Q ss_pred CC-CCeehHH--HHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 042265 305 QE-KNLFTWN--AMLVGLAMHGLG-RLSLVYFSRMIEARIKPDGVTILGALVGC 354 (490)
Q Consensus 305 ~~-~~~~~~~--~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 354 (490)
.+ .|+.+-. .+..+....|.. .+++.++..+.. .++..+-...+.++
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 43 3433322 233333444443 567778888764 34555444433333
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.80 E-value=1.1 Score=34.88 Aligned_cols=25 Identities=8% Similarity=-0.116 Sum_probs=13.3
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
+..+.+++...+++..|...|++..
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444455555555555555555543
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.75 E-value=0.6 Score=34.82 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=39.7
Q ss_pred CCchHHHHHHhhhhhcCCH---HHHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 378 KELKHYGCMADLLGRAGLI---EEALEMIKKMP-MGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
|++.+--.+..++.+.... .+++.+++++. ..| ....+.-+.-++.+.|++++|.+..+.+++..|++..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4444444455555555444 34555555543 222 2344555666677777777777777777777777653
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.38 E-value=0.59 Score=36.46 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
..-..++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 46677999999999999999999865
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.07 E-value=6.7 Score=41.94 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcc
Q 042265 282 TGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 282 ~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
-.+..+|...|++++|.+.|++.
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 33455555666666666666554
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.45 E-value=1.2 Score=33.11 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
|.-+..+-++.+....+.|++......+++|.+.+|+..|.++++.++.+ ..+....|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 34456666777777889999999999999999999999999999999985 44445667777653
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.36 E-value=8.8 Score=33.71 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHcc
Q 042265 181 NTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQL----FCNMMDLDIKPDNIALVSALSACARL 256 (490)
Q Consensus 181 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~ 256 (490)
.++..-|.+.+++++|++++.. -...+.+.|++..|-++ ++-..+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3445556666777777666533 23345556776655553 44555667888888777777776553
Q ss_pred CChH-HHHHHHHHH----HHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHc---CChH
Q 042265 257 GELE-QGKNIHRYI----ELNQ--IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMH---GLGR 326 (490)
Q Consensus 257 ~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 326 (490)
...+ .-.++.+.+ .+.| ..-++.....+...|.+.|++.+|+..|-.....++..+..++--+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3211 112233333 3332 2346788889999999999999999988633322344444444333332 3222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 327 LSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
++ +...-..++. |.-.|+...|..+++...+.
T Consensus 186 e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred hH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 22 1112222333 44578999999998887654
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.20 E-value=11 Score=34.49 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCChhhHH---
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPD-----NIALVSALSACARLGELEQGKNIHRYIELN--QIRVDSFLST--- 282 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 282 (490)
-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777778888888777777765311111 123444556667777777777777666543 2223332221
Q ss_pred -HHHHHHH-hcCCHHHHHHHHh
Q 042265 283 -GLVDFYA-KCGYINTAIEIFE 302 (490)
Q Consensus 283 -~l~~~~~-~~~~~~~A~~~~~ 302 (490)
.-...+. ..+++..|...|-
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHH
Confidence 1222344 5677777766553
No 254
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.76 E-value=7.2 Score=31.81 Aligned_cols=18 Identities=6% Similarity=-0.081 Sum_probs=8.2
Q ss_pred CchhHHHHHHHHHHhcCC
Q 042265 144 CDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 144 ~~~~~~~~li~~~~~~g~ 161 (490)
++..+-...+..+.+.|.
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444444444444
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.23 E-value=11 Score=33.32 Aligned_cols=144 Identities=17% Similarity=0.093 Sum_probs=68.2
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhhccCc
Q 042265 284 LVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYF----SRMIEARIKPDGVTILGALVGCSHAGL 359 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~l~~~~~~~g~ 359 (490)
+..=|.+.+++++|++++-. -...+.+.|+...|.++. +-..+.+++++......++..+.....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 33335556666666655422 122334445544443332 334445566666666555555543332
Q ss_pred --HHHHHHHHHHhHH---hhC--CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHH---------------
Q 042265 360 --VDEARKLFDEMES---VYG--VSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSG--------------- 417 (490)
Q Consensus 360 --~~~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------- 417 (490)
.+. ..+.+++.+ .+| ..-++.....+...|.+.+++.+|...|-- ...+++..+..
T Consensus 110 ~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~~~e~d 187 (336)
T 3lpz_A 110 GEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDESHTAP 187 (336)
T ss_dssp TCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcCCccHH
Confidence 111 122222211 112 223555666667777777777777665521 11111122211
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHh
Q 042265 418 -----LLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 418 -----l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.+--|...++...|..+++...+
T Consensus 188 lfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 188 LYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22225566788888877666554
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.86 E-value=2.6 Score=29.58 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=41.2
Q ss_pred hhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 93 LNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 93 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
-+..+-++.+....+.|++....+.+++|-+.+++..|.++++.++..- .+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3455556666666777788888888888888888888888887766543 334455665543
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.71 E-value=3.3 Score=41.48 Aligned_cols=55 Identities=11% Similarity=-0.129 Sum_probs=44.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC
Q 042265 250 LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ 305 (490)
Q Consensus 250 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 305 (490)
...|...|+++-|..+-++..... |.+..+|..|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344567788888988888888775 6678888899999999999999988887765
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.20 E-value=21 Score=35.02 Aligned_cols=341 Identities=7% Similarity=-0.136 Sum_probs=164.3
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
+.+++...+.++.. ++.+...-.....+....|+..+|....+.+-..| .........++..+
T Consensus 84 ~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~--------------- 146 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW--------------- 146 (618)
T ss_dssp HTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH---------------
T ss_pred hCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHH---------------
Confidence 45566666665554 33334334445555555666555555555554443 12222333333333
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--CeehHHHH
Q 042265 137 VLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR--DAVSWGTL 214 (490)
Q Consensus 137 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l 214 (490)
.+.| ..+....-.-+......|+...|..+...+..........++....+ ...+.......... +...+...
T Consensus 147 -~~~g-~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 147 -RASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTGATDFTRQMAAVA 221 (618)
T ss_dssp -HHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSCCCHHHHHHHHHH
T ss_pred -HHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccCCChhhHHHHHHH
Confidence 3333 11221122223344445555555555555421111122333333222 22223333222111 11112222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALV----SALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK 290 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 290 (490)
+.-+.+ .+.+.|...+....+.. ..+..... .+.......+...++...+...... ..+.......+....+
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHH
Confidence 333333 37788988888876543 22333222 2222333445355666666654443 2344444555555667
Q ss_pred cCCHHHHHHHHhccCCCC---eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 291 CGYINTAIEIFESSQEKN---LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
.|+++.|...|+.+.... ....-=+..++...|+.++|..+|..+... .+ -|..+.. .+.|....
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~Lg~~~~----- 365 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYE----- 365 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCC-----
T ss_pred CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCC-----
Confidence 899999999999887642 223344566777889999999999888642 12 2333322 12221000
Q ss_pred HHhHHhhCCCCC-ch-----HHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 368 DEMESVYGVSKE-LK-----HYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 368 ~~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
. ......+. .. .--.-+..+...|....|...+..+....+......+.......|.++.++....+.
T Consensus 366 --~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 366 --L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp --C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred --C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0 00000010 00 011224456677888888877776554445444445555566777777777655443
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.99 E-value=3.5 Score=31.17 Aligned_cols=68 Identities=7% Similarity=-0.080 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 408 MGGDVFVWSGLLGGCRIHGNV---EIAEAAAEHVMKLKPE-DGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..++..+--.+..++.+..+. .+++.+++...+..|. .......|+.++.+.|+|++|.++.+.+.+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345667777777777766544 4677777777776663 3446667777888888888888877777554
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.60 E-value=14 Score=32.44 Aligned_cols=147 Identities=10% Similarity=0.055 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhhccC
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVY----FSRMIEARIKPDGVTILGALVGCSHAG 358 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~g 358 (490)
++..-|.+.+++++|.+++.. -...+.++|++..|-++ .+...+.+++++......++..+..-.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 344446666777777766532 12334555665555443 444455677777777777766654422
Q ss_pred cHH-HHHHHHHHhHHh---hC--CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC----------------CC--CCHHH
Q 042265 359 LVD-EARKLFDEMESV---YG--VSKELKHYGCMADLLGRAGLIEEALEMIKKMP----------------MG--GDVFV 414 (490)
Q Consensus 359 ~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------~~--~~~~~ 414 (490)
.-+ .-.++.+++.+- .+ ..-++.....+...|.+.|++.+|...|-.-. .. +.+..
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 100 112233333221 12 22356677778888888888888877553111 11 21111
Q ss_pred HH----HHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 415 WS----GLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 415 ~~----~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.. ..+--|...|+...|..+++...+
T Consensus 187 ~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 187 VAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11 112225567888888888887654
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.39 E-value=3.9 Score=37.54 Aligned_cols=71 Identities=7% Similarity=-0.070 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCChhhHH
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIEL-----NQIRVDSFLST 282 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 282 (490)
...++..+...|++++|...+..+.... +.+...+..+|.++.+.|+..+|...|+...+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456677778888888888888877653 45777888888888888988888888877644 47778776544
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.47 E-value=3.1 Score=31.05 Aligned_cols=67 Identities=7% Similarity=-0.069 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 409 GGDVFVWSGLLGGCRIHGNV---EIAEAAAEHVMKLKPE-DGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 409 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+++.+--.+..++.+..+. .+++.+++...+..|. ....+..|+.++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34666666666666665543 4567777777666663 3455667777777777777777777766543
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.32 E-value=21 Score=38.13 Aligned_cols=60 Identities=5% Similarity=-0.058 Sum_probs=32.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 245 ALVSALSACARLGELEQGKNIHRYIELNQIRVDS----FLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 245 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
-|..++..+.+.+..+.+.++-..+.+...+.+. ..|..+.+.+...|++++|...+-.+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 4555555666666666666555555543211111 14555566666666666666655444
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.21 E-value=12 Score=30.17 Aligned_cols=9 Identities=22% Similarity=0.099 Sum_probs=3.4
Q ss_pred HHHHHHHcC
Q 042265 315 MLVGLAMHG 323 (490)
Q Consensus 315 l~~~~~~~~ 323 (490)
.+.++...|
T Consensus 158 A~~aL~~~~ 166 (201)
T 3ltj_A 158 AADALGEIG 166 (201)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 333333333
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.89 E-value=7.9 Score=27.00 Aligned_cols=86 Identities=16% Similarity=0.073 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHH
Q 042265 258 ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIE 337 (490)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 337 (490)
..++|..|-+.+...+. ...+-.+-+..+.+.|++++|..+.+...-||...|-++.. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666552 22222333446778899999999988888888888876644 477888888888777776
Q ss_pred CCCCCCHHHHH
Q 042265 338 ARIKPDGVTIL 348 (490)
Q Consensus 338 ~~~~p~~~~~~ 348 (490)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 34444443
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.45 E-value=21 Score=31.59 Aligned_cols=165 Identities=13% Similarity=0.018 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHccC
Q 042265 182 TLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLF----CNMMDLDIKPDNIALVSALSACARLG 257 (490)
Q Consensus 182 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~~~~~l~~~~~~~~ 257 (490)
++..-|.+.+++++|++++.. -...+.+.|+...+-++- +-+.+.++++|......++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344556666666666665432 223344556655544443 44455677777777777777766554
Q ss_pred ChH-HHHHHHHHH----HHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHH
Q 042265 258 ELE-QGKNIHRYI----ELNQ--IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 258 ~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
.-+ .-..+.+.+ .+.| ..-|+.....+...|.+.+++.+|+..|--..++++..+..++--+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 321 112233332 2222 345677888899999999999999998853333333455444443333332211
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 331 YFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 331 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
++...-..++. |...++...|...++...+
T Consensus 186 -----------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 12223333333 4457888888887777665
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.37 E-value=8.5 Score=26.91 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHH
Q 042265 258 ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIE 337 (490)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 337 (490)
..++|..|-+.+...+. ...+-.+-+..+.+.|++++|..+.+...-||...|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665542 22222233445677888888888888888888888776644 366777777777767666
Q ss_pred CCCCCCHHHH
Q 042265 338 ARIKPDGVTI 347 (490)
Q Consensus 338 ~~~~p~~~~~ 347 (490)
.| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3343333
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.86 E-value=5.7 Score=29.59 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=43.0
Q ss_pred hHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 94 NAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
+..+-++.+...++.|++......+++|-+.+|+..|.++++-++..- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 445556666666778888888888888888888888888888876653 444556666654
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.39 E-value=3.8 Score=34.92 Aligned_cols=58 Identities=24% Similarity=0.258 Sum_probs=47.9
Q ss_pred hhhhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 389 LLGRAGLIEEALEMIKK-MPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.+.+.|++++|++.... ++..| |...-..++..++-.|++++|..-++...+++|...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 45678899999887754 66777 888888889999999999999999999999998644
No 270
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.21 E-value=38 Score=31.56 Aligned_cols=96 Identities=9% Similarity=-0.064 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhhccCcHHHHHHHHHHhHHh-hCCCCCc----h
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEA--RIKPD---GVTILGALVGCSHAGLVDEARKLFDEMESV-YGVSKEL----K 381 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~----~ 381 (490)
...|...+...|++.+|..++..+... |..+. ...+..-++.|...+++.+|..++.++... ....+++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356778888999999999999988642 32222 235566777889999999999999987542 1222222 3
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
.+...+..+...+++.+|.+.|.++-
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55677778888999999988876653
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.74 E-value=29 Score=29.38 Aligned_cols=47 Identities=6% Similarity=-0.060 Sum_probs=21.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHh
Q 042265 256 LGELEQGKNIHRYIELNQIRVDSFL--STGLVDFYAKCGYINTAIEIFE 302 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~ 302 (490)
.++......+.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3443334455555555554443211 1122333444556555555555
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.23 E-value=25 Score=28.45 Aligned_cols=49 Identities=10% Similarity=-0.147 Sum_probs=32.5
Q ss_pred CCHHHHHHHHhhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 394 GLIEEALEMIKKMPM----GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 394 g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
+...++..+|.-|.. ..-+..|......+...|++++|.++|+..++..
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 435566666665532 2266677777777777788888888888777733
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.94 E-value=13 Score=26.02 Aligned_cols=78 Identities=10% Similarity=0.016 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCC
Q 042265 12 TIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSS 91 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 91 (490)
+...+..|=+++...| ....+.-+-+..+. +.|++++|..+.+.+..||...|-.|.. .+.|-
T Consensus 21 ~HqEA~tIAdwL~~~~-----~~E~v~lIR~sSLm----------NrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl 83 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG-----QDEAARLIRISSLA----------NQGRYQEALAFAHGNPWPALEPWFALCE--WHLGL 83 (115)
T ss_dssp CHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHH----------HTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTC
T ss_pred HHHHHHHHHHHHHhCC-----cHHHHHHHHHHHHH----------cchhHHHHHHhcCCCCCchHHHHHHHHH--Hhccc
Confidence 4455566666666655 22222222233444 5777777777777777777777765543 45666
Q ss_pred chhHHHHHHHhhhCC
Q 042265 92 PLNAVVLFSQMRTVS 106 (490)
Q Consensus 92 ~~~A~~~~~~m~~~~ 106 (490)
.+++..-+..+..+|
T Consensus 84 ~s~le~rL~~la~sg 98 (115)
T 2uwj_G 84 GAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhCC
Confidence 666666665665554
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.13 E-value=15 Score=34.09 Aligned_cols=59 Identities=14% Similarity=-0.089 Sum_probs=26.0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhh-CCCCCchHHHHHHhhhhhcCCHHHHHHHHhh
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVY-GVSKELKHYGCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
...+...+.+.|+++.|.+.|.++.... +...-...+..+++.+...+++..+...+++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444444555555555555555554421 1111123333444444444555544444443
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.04 E-value=22 Score=33.06 Aligned_cols=95 Identities=13% Similarity=-0.048 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhccCCC------CeehHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHH--
Q 042265 279 FLSTGLVDFYAKCGYINTAIEIFESSQEK------NLFTWNAMLVGLAMHGLGRLSLVYFSRMIE---ARIKPDGVTI-- 347 (490)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~-- 347 (490)
.+...+...|.+.|+++.|.+.|.++... -...+-..+..+...+++..+...+++... .+..|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45677888888888888888888776641 234566677778888888888888877654 2323322211
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
..-...+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122245677888888888888775
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.25 E-value=34 Score=28.93 Aligned_cols=199 Identities=10% Similarity=-0.008 Sum_probs=104.1
Q ss_pred CCCChhHHHHhhccCCCCCcc---cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc---cHHHHHHHHhccCCcHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTF---SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY---SFPFLLRACSQLCSHSLA 130 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a 130 (490)
+.|+++.+..+++.-..++.. .-.+.+...+..|+.+- ++.+.+.|..|+.. ..+. +...+..|+.+
T Consensus 14 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~-- 86 (285)
T 1wdy_A 14 QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATP-FLLAAIAGSVK-- 86 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCH-HHHHHHHTCHH--
T ss_pred HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCH-HHHHHHcCCHH--
Confidence 578888888888765433221 11234555667777654 44445556555432 2233 33344556655
Q ss_pred HHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHHHhcccCCch------------hHHHHHHHHHhcCCHHHH
Q 042265 131 QTIHSQVLKLGFICDVFV--LNSLMHVYCVFHRLRDAQELFDEILYRDVV------------SCNTLIDGYVKAGDLAHA 196 (490)
Q Consensus 131 ~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~a 196 (490)
+++.+.+.|..++... -...+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+.+-+
T Consensus 87 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 164 (285)
T 1wdy_A 87 --LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164 (285)
T ss_dssp --HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred --HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence 4445555665444221 112344456778888777777765333211 011344455678888888
Q ss_pred HHHHhhCC-CC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCChHHHHHH
Q 042265 197 RQLFDRMP-FR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIA--LVSALSACARLGELEQGKNI 265 (490)
Q Consensus 197 ~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~ 265 (490)
..+++... .. +..-.+.+ ...+..++.....++++.+.+.|..++... -.+.+...+..|+.+-+..+
T Consensus 165 ~~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 165 KILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238 (285)
T ss_dssp HHHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 88887632 11 22222333 334456666556677777777776554321 11223334455665544433
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.23 E-value=25 Score=24.62 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=21.5
Q ss_pred hcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 042265 189 KAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLD 238 (490)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 238 (490)
..|++++|..+.+...-||...|.+|.. .+.|..+++...+..+..+|
T Consensus 52 NrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 52 NRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred cchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3444444444444444444444433322 24455555555554554444
No 278
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.89 E-value=54 Score=27.93 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=78.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc----hHHHHHHhhhhh
Q 042265 317 VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKEL----KHYGCMADLLGR 392 (490)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 392 (490)
....+.|+.++|++....-++.. +-|...-..+++.+|-.|+++.|.+-++...+. .|+. ..|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 34567788899998888777763 336677777888899999999999988888763 2332 234444332
Q ss_pred cCCHHHHH-HHHhhCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhhCCCCCchH
Q 042265 393 AGLIEEAL-EMIKKMPMGG-----DVFVWSGLLGGC--RIHGNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 393 ~g~~~~A~-~~~~~~~~~~-----~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
+... ++|.- ...| ...-...++.+. ...|+.+.|.++-.++.+.-|..+...
T Consensus 78 ----E~~R~~vfaG-~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 78 ----AQARKDFAQG-AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 137 (273)
T ss_dssp ----HHHHHHHTTS-CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ----HHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc
Confidence 1222 22221 1122 334444555553 456999999999999988877766433
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=66.77 E-value=18 Score=30.19 Aligned_cols=89 Identities=10% Similarity=0.005 Sum_probs=51.3
Q ss_pred HHHHHHHcCCCchhHHHHHHHhhhC--CCCC----CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 81 TIIRAHTLFSSPLNAVVLFSQMRTV--SIPP----DFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
--++.+....++++|++++++..+. ++++ +.......+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3477888999999999999987642 2222 1122233333333333333344444444 22 445555666677
Q ss_pred HHHhcCChHHHHHHHHhc
Q 042265 155 VYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~ 172 (490)
.+.+.|+.++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 778888888888776543
No 280
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=65.57 E-value=63 Score=27.45 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=8.5
Q ss_pred CchhHHHHHHHHHHhcCC
Q 042265 144 CDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 144 ~~~~~~~~li~~~~~~g~ 161 (490)
++..+-...+..+.+.|.
T Consensus 35 ~~~~vr~~A~~~L~~~~~ 52 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG 52 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHccCC
Confidence 344444444455555443
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.47 E-value=73 Score=28.54 Aligned_cols=29 Identities=3% Similarity=-0.056 Sum_probs=20.3
Q ss_pred HHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCC
Q 042265 37 LTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPS 75 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 75 (490)
....+|.-|. ..|+.++|...++++..|.
T Consensus 56 ~~~~ii~EYf----------~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 56 TLTPIIQEYF----------EHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHH----------HHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHHh----------cCCCHHHHHHHHHHhCCch
Confidence 3455666666 6788888888888877554
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.37 E-value=46 Score=26.90 Aligned_cols=56 Identities=7% Similarity=-0.133 Sum_probs=36.6
Q ss_pred CCchhHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc
Q 042265 90 SSPLNAVVLFSQMRTVSIPPDFY-SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICD 145 (490)
Q Consensus 90 g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 145 (490)
+....+.++|..|...||.-... .|......+...|++.+|.++|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33557777777777766654443 455666666667777777777777777665554
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.56 E-value=50 Score=25.28 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
-+..|......+...|++++|.++++..++
T Consensus 100 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 100 SSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555555555555555555
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.63 E-value=96 Score=28.26 Aligned_cols=214 Identities=12% Similarity=0.064 Sum_probs=113.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhccCC------CCeehHH---
Q 042265 248 SALSACARLGELEQGKNIHRYIELNQIRVD-----SFLSTGLVDFYAKCGYINTAIEIFESSQE------KNLFTWN--- 313 (490)
Q Consensus 248 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~--- 313 (490)
.++..|...|++.+|..++..+.+.--..| ..++..-++.|...+++.++...+..... +++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 577888899999999998888876522222 34556667788888999988888865432 2232221
Q ss_pred -HHHHHHH-HcCChHHHHHHHHHHHHC-C-C-CC---CHHHHHHHHHHhhccCcHHHHHHHHH-HhHHhhCCCCCchHHH
Q 042265 314 -AMLVGLA-MHGLGRLSLVYFSRMIEA-R-I-KP---DGVTILGALVGCSHAGLVDEARKLFD-EMESVYGVSKELKHYG 384 (490)
Q Consensus 314 -~l~~~~~-~~~~~~~A~~~~~~m~~~-~-~-~p---~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~ 384 (490)
.-...+. ..+++..|...|-+.... . . .| +...|..+.. .. .++..+...++. .....+ ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhcccccccc-CCccHHHHH
Confidence 1223355 678888888876655321 1 1 11 1112322222 22 222222222221 111211 234444455
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHHHHHHHHHhcC
Q 042265 385 CMADLLGRAGLIEEALEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g 460 (490)
.++.+| ..+++.+...+++.... ..|+.....+ ..+ -..+.+..+. ..|-....+..++..+.-
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L--------~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~l-- 328 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTL--------YDTMLEQNLCRIIEPYSRVQVAHVAESIQL-- 328 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHH--------HHHHHHHHHHHHHTTCSEEEHHHHHHHHTC--
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHH--------HHHHHHHHHHHHhHhhceeeHHHHHHHHCc--
Confidence 555554 45677777777665432 1143321111 000 0111122221 556666677788777643
Q ss_pred ChHHHHHHHHHHhcCC
Q 042265 461 RWEDVVKIRRSLDAGK 476 (490)
Q Consensus 461 ~~~~A~~~~~~m~~~~ 476 (490)
..+++...+-+|...|
T Consensus 329 s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 329 PMPQVEKKLSQMILDK 344 (394)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6788999998888665
No 285
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=61.51 E-value=82 Score=27.62 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=41.9
Q ss_pred HHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 402 MIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 402 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+|......| -..++..-+....+.+++..|..+.++++++.|+.. ..++|.+++....+.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 344444444 444666677778899999999999999999998533 345566666665533
No 286
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=58.48 E-value=49 Score=26.50 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 396 IEEALEMIKKMPMGGDVF-------VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
++.|+-+|+.+...-+.. .-...+..|.+.|.+++|.+++++.....+.+...-.-|...-.+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 456777777766443211 11233445888888888888888877766555544444444443333
No 287
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.92 E-value=1e+02 Score=30.44 Aligned_cols=16 Identities=13% Similarity=0.327 Sum_probs=12.2
Q ss_pred HhcCChHHHHHHHHHH
Q 042265 457 ANADRWEDVVKIRRSL 472 (490)
Q Consensus 457 ~~~g~~~~A~~~~~~m 472 (490)
.+.|+|++|.+.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 6778888888777765
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.79 E-value=65 Score=25.04 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
-+..|......+-..|++.+|.++|+..++..
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 66677777777777788888888888777743
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.21 E-value=1e+02 Score=32.14 Aligned_cols=47 Identities=9% Similarity=-0.143 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCCc----hHHHHHHHHHhcC
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMK-LKPEDGG----VYKVLADVYANAD 460 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~g 460 (490)
-|..++..+.+.+.++-++++.+.+++ ..++++. .+..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 566777778889999999999999998 5555553 4555555555443
No 290
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=56.01 E-value=35 Score=25.05 Aligned_cols=51 Identities=12% Similarity=-0.069 Sum_probs=28.3
Q ss_pred CCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 042265 109 PDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR 163 (490)
Q Consensus 109 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 163 (490)
+|...-...+.++.+.++.+ +...+..+.+ .++..+-...+.++.+.|+.+
T Consensus 54 ~~~~vR~~A~~aL~~~~~~~-a~~~L~~~L~---d~~~~VR~~A~~aL~~~~~~~ 104 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDER-AVEPLIKLLE---DDSGFVRSGAARSLEQIGGER 104 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSHH-HHHHHHHHHH---HCCTHHHHHHHHHHHHHCSHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH
Confidence 45555555666666666533 3344444443 345556666666676666543
No 291
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=54.08 E-value=27 Score=24.30 Aligned_cols=66 Identities=9% Similarity=0.010 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHH
Q 042265 17 HQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAV 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 96 (490)
..|+.++.+.| + -+..-...+-. .. ...+.+.|.++++.+++....+|..++.++...|+..-|.
T Consensus 24 ~~vld~L~~~~-v---lt~~~~e~I~~-~~----------~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 24 DQLWDVLLSRE-L---FRPHMIEDIQR-AG----------SGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTTHHHHHHTT-S---SCHHHHHHHHT-ST----------TCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHcC-C---CCHHHHHHHHh-cc----------CCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46777888877 4 23333333222 21 1257889999999999988899999999998777765554
Q ss_pred H
Q 042265 97 V 97 (490)
Q Consensus 97 ~ 97 (490)
.
T Consensus 89 l 89 (97)
T 3ygs_P 89 F 89 (97)
T ss_dssp H
T ss_pred H
Confidence 3
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.84 E-value=57 Score=24.11 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCe---ehHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 042265 282 TGLVDFYAKCGYINTAIEIFESSQEKNL---FTWNAMLVGLAMHGL--GRLSLVYFSRMIEARIKPD 343 (490)
Q Consensus 282 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~ 343 (490)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4566667777778888777777765521 223333333333322 3456666777766665443
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.54 E-value=1.2e+02 Score=25.87 Aligned_cols=137 Identities=9% Similarity=-0.015 Sum_probs=64.8
Q ss_pred CCCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIP--YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIH 134 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 134 (490)
+..+..+..+++..-. .+|..-++ .+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..+
T Consensus 8 ~~~~~~~v~~lL~~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~L- 81 (285)
T 3kea_A 8 NTWKSKQLKSFLSSKDTFKADVHGHS-ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKIL- 81 (285)
T ss_dssp GGCCHHHHHHHHHSTTTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHH-
T ss_pred HhcCHHHHHHHHHhCCCCccCCCCCC-HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHH-
Confidence 4566777777775432 23333333 3444556777665544444 44444433223344455666776655444
Q ss_pred HHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhh
Q 042265 135 SQVLKLGFICDVFV--LNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDR 202 (490)
Q Consensus 135 ~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 202 (490)
.+.|..++... -...+...+..|+.+-+.-+++.-..+ +..-+.+.+...+..|+.+-+.-+++.
T Consensus 82 ---l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~ 151 (285)
T 3kea_A 82 ---LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151 (285)
T ss_dssp ---HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT
T ss_pred ---HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 44554443211 112233344566666666555553222 222222333344445555555444444
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.15 E-value=83 Score=24.05 Aligned_cols=52 Identities=6% Similarity=-0.136 Sum_probs=30.4
Q ss_pred hHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc
Q 042265 94 NAVVLFSQMRTVSIPPDFY-SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICD 145 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 145 (490)
.+.++|..|...||..... .|......+...|++++|.++|+.-++.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3666666666665544433 355555555566666666666666666555553
No 295
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=49.21 E-value=1e+02 Score=24.79 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=44.7
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc-----HHHHHHHHHHhHHhhCCCCCch
Q 042265 314 AMLVGLA---MHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL-----VDEARKLFDEMESVYGVSKELK 381 (490)
Q Consensus 314 ~l~~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~ 381 (490)
-+|+++. +..+++.|+-++-+|++.| .|....-..++.+....|. ...|...++..... |.+--..
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE~~i 89 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL-GLPEARI 89 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH-CTTTTHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCHHHH
Confidence 3455553 5689999999999999999 8777776777777666554 34455556655554 6654443
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.10 E-value=1.2e+02 Score=25.85 Aligned_cols=16 Identities=13% Similarity=-0.139 Sum_probs=7.7
Q ss_pred HHhcCCHHHHHHHHhc
Q 042265 288 YAKCGYINTAIEIFES 303 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~ 303 (490)
.+..|+.+-+..+++.
T Consensus 69 A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 69 AATLEDTKIVKILLFS 84 (285)
T ss_dssp HTTSSSCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHC
Confidence 3444555555544443
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.64 E-value=44 Score=24.69 Aligned_cols=59 Identities=12% Similarity=0.291 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCC---eehHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCC
Q 042265 182 TLIDGYVKAGDLAHARQLFDRMPFRD---AVSWGTLVAGYAQSDQ--CEEAIQLFCNMMDLDIK 240 (490)
Q Consensus 182 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~ 240 (490)
.++.-|...||.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34445555555555555555554331 1122222223333221 24455555555555543
No 298
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.57 E-value=1.1e+02 Score=24.79 Aligned_cols=181 Identities=14% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHH--HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHH--HHHHHH
Q 042265 81 TIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFP--FLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLN--SLMHVY 156 (490)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~ 156 (490)
+.+...++.|+.+.+..+++.+.+.|..++..... +.+...+..|+. ++++.+.+.|..++..... ..+...
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHH
Q ss_pred HhcCChHHHHHHHHh------cccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeh---HHHHHHHHHhcCChhHH
Q 042265 157 CVFHRLRDAQELFDE------ILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVS---WGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 157 ~~~g~~~~A~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A 227 (490)
+..|+.+-+..+++. -.......-.+.+...+..|+.+-+..+++.-...+... -.+.+...+..|+.+-+
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 042265 228 IQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHR 267 (490)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 267 (490)
..+++. ...+......-.+.+...+..|+.+-+..+++
T Consensus 167 ~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 167 QLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
No 299
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=47.49 E-value=1.3e+02 Score=25.42 Aligned_cols=48 Identities=4% Similarity=-0.206 Sum_probs=21.3
Q ss_pred CCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 042265 109 PDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH 160 (490)
Q Consensus 109 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 160 (490)
+|...-...+.++...+. ..+...+..+.. .++..+-...+.++.+.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhc
Confidence 344433444444555553 223333333332 344455555555555555
No 300
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=46.73 E-value=38 Score=22.30 Aligned_cols=39 Identities=8% Similarity=0.090 Sum_probs=26.8
Q ss_pred HHhhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHhh
Q 042265 65 LSIFNNIP--YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMR 103 (490)
Q Consensus 65 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 103 (490)
..++++++ +|++.||+-+....-+..-..++..+.+++-
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45677776 5888899887776666655566666666543
No 301
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.92 E-value=46 Score=25.52 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCe---ehHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQEKNL---FTWNAMLVGLAMHGL--GRLSLVYFSRMIEARIKPD 343 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~ 343 (490)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...++-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34566667777777777777777765521 223333333333222 3445666666666655443
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.47 E-value=1.5e+02 Score=25.78 Aligned_cols=195 Identities=10% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC--CeehHHHHHHHHHHcCChHH--HHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQEK--NLFTWNAMLVGLAMHGLGRL--SLVYFSRMIEARIKPDGVTILGALVGCSH 356 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~--A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 356 (490)
...+++-|...|+.++|...++++..| .......++......++.+. +-.++..+.. ++-+.......+...+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Q ss_pred cCc--------HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC--HHHHHHHH-----------------hhCCCC
Q 042265 357 AGL--------VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL--IEEALEMI-----------------KKMPMG 409 (490)
Q Consensus 357 ~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~-----------------~~~~~~ 409 (490)
..+ ++..-.++.++... ++-|-..............|+ ...|..++ ..+...
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d-~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGD-GILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHT-TSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHh-CCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHH
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh--HHHHHHHHHHhcCCC
Q 042265 410 GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW--EDVVKIRRSLDAGKI 477 (490)
Q Consensus 410 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~~~ 477 (490)
.-......++.-|...|+.++|.+.++++..-.-.+..+...+..++-+.++. +....++..+.+.|+
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.33 E-value=1.2e+02 Score=28.71 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHh
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQM 102 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m 102 (490)
+|.+++.|...+.++.|..+..+.
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHhcC
Confidence 444445555555555555554443
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.24 E-value=2e+02 Score=26.78 Aligned_cols=113 Identities=11% Similarity=-0.053 Sum_probs=77.1
Q ss_pred CCCChhHHHHhhccCCCCCc-ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPST-FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHS 135 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 135 (490)
...+.+-|.++..+..-|.. ..|..-...+...|++++|..+-....+ |+-.+..|.+.+-..-...|+..-...+|.
T Consensus 341 ~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 341 VLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp TTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 45677788888877664443 2455566778889999999988776653 455566666666555555677777888888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 042265 136 QVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDE 171 (490)
Q Consensus 136 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 171 (490)
.+.+.| ..+..--..+++.-...|+.+-..+.+.+
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 888887 56665555666666677776655555544
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.61 E-value=1e+02 Score=24.16 Aligned_cols=14 Identities=0% Similarity=-0.102 Sum_probs=7.0
Q ss_pred HcCCCchhHHHHHH
Q 042265 87 TLFSSPLNAVVLFS 100 (490)
Q Consensus 87 ~~~g~~~~A~~~~~ 100 (490)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44555555554443
No 306
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.61 E-value=1.1e+02 Score=23.68 Aligned_cols=56 Identities=7% Similarity=-0.057 Sum_probs=40.7
Q ss_pred hhHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhH
Q 042265 93 LNAVVLFSQMRTVSIPPDFY-SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFV 148 (490)
Q Consensus 93 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 148 (490)
+.+.++|..|...||..... .|......+-..|++..|.++|+.-++.+-.|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 44777888888887765544 466667777778888888888888888776665443
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.48 E-value=41 Score=28.13 Aligned_cols=56 Identities=13% Similarity=-0.126 Sum_probs=34.1
Q ss_pred HHHHHcCCCchhHHHHHHHhhhCCCCCCcc-------cHHHHHHHHh--ccCCcHHHHHHHHHHH
Q 042265 83 IRAHTLFSSPLNAVVLFSQMRTVSIPPDFY-------SFPFLLRACS--QLCSHSLAQTIHSQVL 138 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~ 138 (490)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 444567788888888888776666555533 2334444432 5677777766666543
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.24 E-value=67 Score=26.44 Aligned_cols=32 Identities=9% Similarity=0.109 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
-+..|......+...|++++|..+|+..++..
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77788888888888899999999999888844
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.09 E-value=2.6e+02 Score=29.10 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=33.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHH
Q 042265 183 LIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNM 234 (490)
Q Consensus 183 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 234 (490)
++..+...|..+-|.++...+.. ++..--.+.++|...|++++|...|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45556667777777666655554 3333345677777888888888888765
No 310
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=42.30 E-value=1.3e+02 Score=24.14 Aligned_cols=65 Identities=8% Similarity=0.116 Sum_probs=40.6
Q ss_pred ehHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCC
Q 042265 209 VSWGTLVAGYA---QSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGE-----LEQGKNIHRYIELNQI 274 (490)
Q Consensus 209 ~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 274 (490)
..+-.+|+++. +-.+++.|+-++..|++.| .|....-..++.+.-..|. ...|...++.....|.
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34445566654 4578999999999999998 6665555555555555443 2234445555555563
No 311
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.57 E-value=77 Score=21.94 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=21.8
Q ss_pred ChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHH
Q 042265 161 RLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHA 196 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 196 (490)
..++|.++++.+..+.+.+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 456666666666666666666666666555554433
No 312
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.31 E-value=1.3e+02 Score=24.19 Aligned_cols=40 Identities=3% Similarity=-0.219 Sum_probs=20.6
Q ss_pred CCChhHHHHhhccCCCC---CcccHHHHHHHHHcCCCchhHHHH
Q 042265 58 TDPLSYALSIFNNIPYP---STFSYNTIIRAHTLFSSPLNAVVL 98 (490)
Q Consensus 58 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 98 (490)
.|+++.+..+++.-..+ +..-. ..+...++.|+.+-+..+
T Consensus 19 ~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 19 YGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYY 61 (240)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHH
T ss_pred cCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHH
Confidence 67777777777653322 22222 344455666665444333
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.05 E-value=1e+02 Score=25.60 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=12.8
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 042265 215 VAGYAQSDQCEEAIQLFCNMM 235 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~ 235 (490)
+..+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455566666666666666544
No 314
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.04 E-value=38 Score=26.00 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC
Q 042265 182 TLIDGYVKAGDLAHARQLFDRMPF 205 (490)
Q Consensus 182 ~l~~~~~~~~~~~~a~~~~~~~~~ 205 (490)
.++.-|...||.++|.+.++++..
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~ 37 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEV 37 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCC
Confidence 344445555555555555555543
No 315
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.78 E-value=78 Score=20.77 Aligned_cols=61 Identities=7% Similarity=0.091 Sum_probs=38.0
Q ss_pred HhhhCCCCCCcccHHHHHHHHhccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 042265 101 QMRTVSIPPDFYSFPFLLRACSQLC-SHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL 162 (490)
Q Consensus 101 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 162 (490)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4556676665443 44555555554 5566777888877766556666666666766666643
No 316
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=39.61 E-value=1.5e+02 Score=24.02 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=47.0
Q ss_pred hHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc-----HHHHHHHHHHhHHhhCCCCCc
Q 042265 311 TWNAMLVGLA---MHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL-----VDEARKLFDEMESVYGVSKEL 380 (490)
Q Consensus 311 ~~~~l~~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~ 380 (490)
.+.-+|+++. +..+++.|+-++-+|++.|-.|....-..++.+....|. ...|...++..... |.+--.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE~~ 110 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV-GFPEGL 110 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-CTTTTH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCHHH
Confidence 3344556654 568999999999999999988877777777777665553 34555566665554 655443
No 317
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.46 E-value=1.1e+02 Score=28.86 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
....-...++.|...|.++..+.|.+...|+.|+......|+.-+|.-.|-+
T Consensus 160 DL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence 3333445566777777777777777777777777776666666555544443
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.39 E-value=96 Score=23.33 Aligned_cols=59 Identities=7% Similarity=0.022 Sum_probs=30.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042265 234 MMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY 293 (490)
Q Consensus 234 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (490)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4455665554432 2333333344445566666666665544555555555556665554
No 319
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.25 E-value=1.2e+02 Score=24.28 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=38.0
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc-----HHHHHHHHHHhHH
Q 042265 315 MLVGLA---MHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL-----VDEARKLFDEMES 372 (490)
Q Consensus 315 l~~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~ 372 (490)
+|+++. +..+++.|+-++-+|++.|-.|....-..++.+....|. ...|...++....
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~ 75 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTR 75 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 455553 568899999999999999888776666666666555443 3344444444444
No 320
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=34.81 E-value=51 Score=20.42 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=31.3
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHH-HhcCChHHHHHHHHHHhcCCCCCCCc
Q 042265 432 EAAAEHVMKLKPEDGGVYKVLADVY-ANADRWEDVVKIRRSLDAGKIKKNAG 482 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~~~~~~~~ 482 (490)
.+.++.+.++.|+-. ...+-.++ ...|+.+.|+..+-.|...+..|+.|
T Consensus 10 ee~l~~L~emFP~ld--~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMD--QEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp HHHHHHHHHHCSSSC--HHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 344455555677532 33333444 45678999999999888887777653
No 321
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.79 E-value=3.4e+02 Score=26.71 Aligned_cols=20 Identities=10% Similarity=-0.037 Sum_probs=14.6
Q ss_pred hhcCCHHHHHHHHhhCCCCC
Q 042265 391 GRAGLIEEALEMIKKMPMGG 410 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~ 410 (490)
...|+++.|++.++++..-|
T Consensus 549 ~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSC
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 56788888888887776555
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.29 E-value=70 Score=24.14 Aligned_cols=62 Identities=10% Similarity=-0.016 Sum_probs=37.1
Q ss_pred HhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 042265 101 QMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR 163 (490)
Q Consensus 101 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 163 (490)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 4555666555432 3344444445556667777777777665556666666667777766543
No 323
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.21 E-value=1.6e+02 Score=23.61 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=30.9
Q ss_pred HHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 042265 212 GTLVAGYA---QSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG 257 (490)
Q Consensus 212 ~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 257 (490)
-.+|+++. +-.+++.|+-++..|++.|-.|....-..++.+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555554 45789999999999999887666555555555554443
No 324
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=33.16 E-value=59 Score=20.60 Aligned_cols=46 Identities=11% Similarity=-0.046 Sum_probs=30.8
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 042265 114 FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH 160 (490)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 160 (490)
++.++...+...-.+.+...+++..+.| ..+..+|..-++.+++..
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 4556666666666777777777777777 666666666666655543
No 325
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.86 E-value=2e+02 Score=23.36 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=41.9
Q ss_pred CeehHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCC
Q 042265 207 DAVSWGTLVAGYAQ---SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGE-----LEQGKNIHRYIELNQI 274 (490)
Q Consensus 207 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 274 (490)
+...+-.+|+++.| -.+++.|+-++..|++.|-.|....-..++.+.-.-|. ...|...++.....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34455556666654 57899999999999999877766555555555544443 2344445555555553
No 326
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=32.05 E-value=2.4e+02 Score=24.74 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 402 MIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 402 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
+|......| -..++..-+....+.+++..|..+.++++++.|+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 444444444 4445666777788999999999999999998875
No 327
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.31 E-value=3e+02 Score=24.96 Aligned_cols=345 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHH--HHHHHHHhcCCH
Q 042265 116 FLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCN--TLIDGYVKAGDL 193 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~l~~~~~~~~~~ 193 (490)
+.+...+..|+.+-+..+++. ...+..........+...+..|+.+-+..+++.-...+..... +.+...++.|+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT--TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred CHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH
Q ss_pred HHHHHHHhhCCCC--CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 042265 194 AHARQLFDRMPFR--DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIEL 271 (490)
Q Consensus 194 ~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 271 (490)
+-+.-+++.-..+ ....-.+.+...+..|+.+-+..+++.-.... ..+....+.+..++.... .++.+.+.+
T Consensus 94 ~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~ 167 (437)
T 1n11_A 94 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGK-----VRVAELLLE 167 (437)
T ss_dssp HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTC-----HHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHcCC-----HHHHHHHHh
Q ss_pred cCCCCChh--hHHHHHHHHHhcCCHHHHHHHHhccCCCCeehH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 042265 272 NQIRVDSF--LSTGLVDFYAKCGYINTAIEIFESSQEKNLFTW--NAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTI 347 (490)
Q Consensus 272 ~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 347 (490)
.|..++.. .-...+...+..|+.+-+.-+++.-..++...+ ...+...+..|+ .++.+.+.+.|..++....
T Consensus 168 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~ 243 (437)
T 1n11_A 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ----VEVARSLLQYGGSANAESV 243 (437)
T ss_dssp TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCT
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCCCCC
Q ss_pred H--HHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHh
Q 042265 348 L--GALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRI 424 (490)
Q Consensus 348 ~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~ 424 (490)
. ..+...+..|..+-+.-+++.-.. ....+..-.+.+..+. ..|+.+-+..+++.-..-. ....-.+.+...+.
T Consensus 244 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~-~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 320 (437)
T 1n11_A 244 QGVTPLHLAAQEGHAEMVALLLSKQAN--GNLGNKSGLTPLHLVA-QEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHTTTCC--TTCCCTTCCCHHHHHH-HHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHH-HcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 042265 425 HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKN 480 (490)
Q Consensus 425 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 480 (490)
.|+.+-+.-+++.-...+..+......|-.+..... .++.+.+.+.|..++
T Consensus 321 ~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~-----~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 321 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH-----TDIVTLLLKNGASPN 371 (437)
T ss_dssp SSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCSC
T ss_pred cCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCCh-----HHHHHHHHHCcCCCC
No 328
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.26 E-value=2e+02 Score=23.01 Aligned_cols=79 Identities=10% Similarity=0.044 Sum_probs=39.4
Q ss_pred CCCChhHHHHhhccCCCCCccc---HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc---cHHHHHHHHhccCCcHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFS---YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY---SFPFLLRACSQLCSHSLA 130 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a 130 (490)
+.|+++-+.-+++.-..++... -...+...+..|+.+- ++.+.+.|..++.. ..+. +...+..|+.+
T Consensus 51 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~-- 123 (240)
T 3eu9_A 51 INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSM----VVQLMKYGADPSLIDGEGCSC-IHLAAQFGHTS-- 123 (240)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH--
T ss_pred HhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCH-HHHHHHcCHHH--
Confidence 5788888888887654322111 1233444555666553 34444555554432 2233 33344556654
Q ss_pred HHHHHHHHHhCCCC
Q 042265 131 QTIHSQVLKLGFIC 144 (490)
Q Consensus 131 ~~~~~~~~~~g~~~ 144 (490)
+++.+.+.|..+
T Consensus 124 --~~~~Ll~~~~~~ 135 (240)
T 3eu9_A 124 --IVAYLIAKGQDV 135 (240)
T ss_dssp --HHHHHHHTTCCT
T ss_pred --HHHHHHhcCCCc
Confidence 344444555443
No 329
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=29.45 E-value=2.8e+02 Score=24.01 Aligned_cols=282 Identities=9% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHH---HHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHH
Q 042265 39 TILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYN---TIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFP 115 (490)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 115 (490)
+.|+.... .|+++-+..+++.-..+|...-. +-+..-++.|+ .++.+.+.+.|..|+.....
T Consensus 27 t~L~~Av~-----------~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~----~~iv~~Ll~~ga~~~~~~~~ 91 (337)
T 4g8k_A 27 HLLIKAVQ-----------NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR----EDIVELLLRHGADPVLRKKN 91 (337)
T ss_dssp HHHHHHHH-----------TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTT
T ss_pred hHHHHHHH-----------cCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC----HHHHHHHHHcCCchhhhccC
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHH------------HH
Q 042265 116 FLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCN------------TL 183 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~l 183 (490)
.....................-....+......-...+...+..|..+-+..+++.-...+..... +.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~ 171 (337)
T 4g8k_A 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171 (337)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred CCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCC
Q 042265 184 IDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALV--SALSACARLGE 258 (490)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~ 258 (490)
+...++.|+.+-+..++++.... -...-...+......+.......+.+.+.+.|..++..... +.+...+..|.
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 042265 259 LEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA 338 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 338 (490)
.+.+..++..-...--..|..-.+.|..+ ++.|+.+-+.-+++.-..+|..+ .+...++.|+.+ +.+-+++.
T Consensus 252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~ 323 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSH 323 (337)
T ss_dssp HHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHT
T ss_pred hHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHC
Q ss_pred CCCCC
Q 042265 339 RIKPD 343 (490)
Q Consensus 339 ~~~p~ 343 (490)
|..||
T Consensus 324 GA~~d 328 (337)
T 4g8k_A 324 GAKED 328 (337)
T ss_dssp TCCC-
T ss_pred cCCCC
No 330
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.25 E-value=97 Score=29.38 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-------chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG-------GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
....++.+++.|...+.++.|..+..+.. .|.+. .-+..+|+.+.-.++|.+|.+.+....+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34556666667777777777777777664 33221 12335566677777777777776665443
No 331
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=29.14 E-value=49 Score=20.47 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=16.8
Q ss_pred hhHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 042265 93 LNAVVLFSQMRTVSIPPDFYSFPFLLRAC 121 (490)
Q Consensus 93 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 121 (490)
++|.+.|.+|.+..-.+...||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665543334455666666665
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.95 E-value=1.4e+02 Score=22.52 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=32.7
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 233 NMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 233 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34556666554432 33444444445556677777776665555555555566666666543
No 333
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.93 E-value=2.5e+02 Score=23.03 Aligned_cols=54 Identities=11% Similarity=-0.060 Sum_probs=41.1
Q ss_pred hhHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCch
Q 042265 93 LNAVVLFSQMRTVSIPPDFY-SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDV 146 (490)
Q Consensus 93 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 146 (490)
+.+.++|..|...||.-... .|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 57778888888887765554 4667777777888888888888888887766643
No 334
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.49 E-value=1.7e+02 Score=22.15 Aligned_cols=62 Identities=10% Similarity=0.100 Sum_probs=40.8
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 042265 100 SQMRTVSIPPDFYSFPFLLRACSQLC-SHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL 162 (490)
Q Consensus 100 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 162 (490)
+.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34566776655443 34555555555 6677888888888877666776666667777777654
No 335
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.43 E-value=1.5e+02 Score=22.89 Aligned_cols=60 Identities=7% Similarity=-0.143 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhhhCCCCC--CcccHHHHHH-H-----HhccCCcHHHHHHHHHHHH
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPP--DFYSFPFLLR-A-----CSQLCSHSLAQTIHSQVLK 139 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 139 (490)
|..-+..+ ..|++-+|-++++..-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333333 4489999999999887764344 4445666666 2 2456888888888888766
No 336
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.91 E-value=64 Score=26.88 Aligned_cols=83 Identities=11% Similarity=-0.152 Sum_probs=48.1
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCchhH-------HHHHHHHHH--hcCChHHHHHHHHhcccC--------------C
Q 042265 120 ACSQLCSHSLAQTIHSQVLKLGFICDVFV-------LNSLMHVYC--VFHRLRDAQELFDEILYR--------------D 176 (490)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~~~~~--------------~ 176 (490)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-..+ |
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34567999998889998888776555332 233433332 567777777777653221 1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhC
Q 042265 177 VVSCNTLIDGYVKAGDLAHARQLFDRM 203 (490)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 203 (490)
..-+ +.+...+..|+.+-+.-+++.-
T Consensus 91 ~~g~-t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 91 YRGQ-TALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp EESB-CHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCCC-CHHHHHHHcCCHHHHHHHHhCC
Confidence 1112 2233344567777666666653
No 337
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.77 E-value=2.6e+02 Score=24.54 Aligned_cols=17 Identities=0% Similarity=-0.164 Sum_probs=10.1
Q ss_pred HHHhcCCHHHHHHHHhc
Q 042265 287 FYAKCGYINTAIEIFES 303 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~ 303 (490)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 34455666666666654
No 338
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.66 E-value=67 Score=22.06 Aligned_cols=42 Identities=19% Similarity=0.060 Sum_probs=26.2
Q ss_pred cCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhh
Q 042265 50 ISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMR 103 (490)
Q Consensus 50 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 103 (490)
+|++++.+..-.+.|..++.... -+-+.|++++|+.+|....
T Consensus 1 ~~~~~~~~~~~l~~Ai~lv~~Av------------e~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 1 GSSGSSGQDSDSTAAVAVLKRAV------------ELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp CCSCSSCCCCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHH
T ss_pred CCCCcccchHHHHHHHHHHHHHH------------HHHHhCCHHHHHHHHHHHH
Confidence 35667777777778877766541 2344566666666666543
No 339
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.46 E-value=1.2e+02 Score=23.42 Aligned_cols=69 Identities=7% Similarity=0.018 Sum_probs=41.9
Q ss_pred hHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCH
Q 042265 225 EEAIQLFCN-MMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELN--QIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 225 ~~A~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 334443333 445677776543 34555666666667788888888776 5555666655566677777643
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.31 E-value=1.6e+02 Score=22.02 Aligned_cols=58 Identities=9% Similarity=0.034 Sum_probs=29.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042265 234 MMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY 293 (490)
Q Consensus 234 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (490)
+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 10 L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 4445666554432 2233333334 44566666666665544555555555555665554
No 341
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.05 E-value=98 Score=22.75 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=11.3
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCC
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVS 106 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~ 106 (490)
++..+...+.+-.|.++++.+.+.+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~ 40 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRG 40 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 3344444444444555555554443
No 342
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.91 E-value=1.1e+02 Score=23.15 Aligned_cols=63 Identities=3% Similarity=-0.047 Sum_probs=40.2
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 042265 100 SQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR 163 (490)
Q Consensus 100 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 163 (490)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3456667655443 33445555555667778888888887776667777666777788777654
No 343
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=24.72 E-value=2.3e+02 Score=21.52 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=23.9
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
+..+...+...|-+++...-+.++. ...++..+..++..|..
T Consensus 10 ~~~~~~~l~~~g~LD~~f~qL~~L~----~~~~~~~~~ell~~Fl~ 51 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQFLQLQQLQ----DENNPEFVFEVVSLFFD 51 (153)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHTC----BTTBTTHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHhh----cCCCHHHHHHHHHHHHH
Confidence 4556666667777774433333332 23456666777777643
No 344
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.38 E-value=1.7e+02 Score=19.83 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHH
Q 042265 130 AQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHAR 197 (490)
Q Consensus 130 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 197 (490)
...+++.+.+.|+ .+..-+..+-. .....++|..+++.+..++..+|..++.++.+.+...-|.
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~ 87 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAA 87 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHH
Confidence 3456666666663 33333332222 2456677777777777777777777777777666544443
No 345
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=24.18 E-value=4.6e+02 Score=27.01 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=56.2
Q ss_pred CCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhhCCCC
Q 042265 378 KELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGGCRIHG-------NVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~p~~ 445 (490)
-+..+...-...-+.... .++.+..+++..+| ++--..+|+.+++..+ +-..-.-+.+.++++++-|
T Consensus 762 ~~~lv~~kwf~~qa~~~~-~~~~~~v~~l~~h~~f~~~npn~~r~l~~~f~~~n~~~fh~~~g~gy~~~~~~~~~l~~~n 840 (891)
T 3b34_A 762 QNGLVMDKWFILQATSPA-ANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRN 840 (891)
T ss_dssp TCHHHHHHHHHHHHTCCC-TTHHHHHHHHTTCTTCCTTCHHHHHHHHHHHHHHCHHHHTCTTSHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHhCCCC-ccHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhccCccccCCCCCcHHHHHHHHHHHhcCcC
Confidence 344444443333333333 33555555555555 8888888998886532 2233344555567788888
Q ss_pred CchHHHHHHHHHhcCChHHHHH
Q 042265 446 GGVYKVLADVYANADRWEDVVK 467 (490)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~ 467 (490)
|.+-..|+.++.+-.++++..+
T Consensus 841 p~~a~r~~~~~~~~~~~~~~~~ 862 (891)
T 3b34_A 841 PQVASRLIEPLIRLKRYDAKRQ 862 (891)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHH
T ss_pred HHHHHHHHHHHhhhhhcCHHHH
Confidence 8899999999998888876655
No 346
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=23.62 E-value=4e+02 Score=23.82 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCe---ehHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHH
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQEKNL---FTWNAMLVGLAMHGL--GRLSLVYFSRMIEARIKPDGV 345 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~ 345 (490)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+...+++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 46677778888888888888888876632 233333334433322 344666677777666554433
No 347
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.19 E-value=1.1e+02 Score=20.98 Aligned_cols=24 Identities=17% Similarity=-0.051 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~ 437 (490)
.+......+.+.|++++|++..++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHH
Confidence 344455556666666666666554
No 348
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.10 E-value=1.6e+02 Score=22.70 Aligned_cols=69 Identities=7% Similarity=0.040 Sum_probs=43.2
Q ss_pred hhHHHHHHH-hhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCh
Q 042265 93 LNAVVLFSQ-MRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKL--GFICDVFVLNSLMHVYCVFHRL 162 (490)
Q Consensus 93 ~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~ 162 (490)
+.+.+-+++ +.+.|++++. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444433 4455766644 3455666666667777888888888877 6556666665566677766654
No 349
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.98 E-value=93 Score=23.22 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=21.2
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 117 LLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 333343334444455555555554444444444444455555544
No 350
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.10 E-value=3.1e+02 Score=24.06 Aligned_cols=81 Identities=14% Similarity=-0.112 Sum_probs=36.3
Q ss_pred hhhhcCCHHHHHHHHhhCCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 389 LLGRAGLIEEALEMIKKMPM-------GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
..+..|+.+-+..+++.-.. ..+..-.+. +...+..|+.+-+..+++.-...+..+..-...|..+ ...|.
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A-~~~g~ 256 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS-VRAAM 256 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH-HHTCC
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHhCh
Confidence 34466777777667664322 001111111 2223456676655555543322322232222233322 34566
Q ss_pred hHHHHHHHHH
Q 042265 462 WEDVVKIRRS 471 (490)
Q Consensus 462 ~~~A~~~~~~ 471 (490)
.+-+..+++.
T Consensus 257 ~~~v~~Ll~~ 266 (364)
T 3ljn_A 257 VLLTKELLQK 266 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6655555554
No 351
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.00 E-value=1.8e+02 Score=21.51 Aligned_cols=66 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHcCC-CchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccC
Q 042265 59 DPLSYALSIFNNIPYPSTFSYNTIIRAHTLFS-SPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLC 125 (490)
Q Consensus 59 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 125 (490)
|.... .+.++...-.....-..++..+...+ .+-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 1 ~~m~~-~~~l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 1 GSMVE-NSELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp --CHH-HHHHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCcc-HHHHHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 352
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.93 E-value=4e+02 Score=23.25 Aligned_cols=130 Identities=11% Similarity=0.134 Sum_probs=78.3
Q ss_pred CchhHHHHHHHhhhC-C----CCCCcccHHHHH---HHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 042265 91 SPLNAVVLFSQMRTV-S----IPPDFYSFPFLL---RACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL 162 (490)
Q Consensus 91 ~~~~A~~~~~~m~~~-~----~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 162 (490)
+-+.|..++..+... + ..|+.......+ ..+.+.-+ -++++.+.+.|+.|...++.-++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888887643 2 234433222221 22222222 35777888889888888888888888887789
Q ss_pred HHHHHHHHhcccC--CchhHHH--HHHH----HHhcCCHHHHHHHHhh-CCCCCeehHHHHHHHHHhcCCh
Q 042265 163 RDAQELFDEILYR--DVVSCNT--LIDG----YVKAGDLAHARQLFDR-MPFRDAVSWGTLVAGYAQSDQC 224 (490)
Q Consensus 163 ~~A~~~~~~~~~~--~~~~~~~--l~~~----~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 224 (490)
+.+..+++.+... ....+-+ ++.. ..+..+.++....+.. .+..+......++.-.....-.
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~s 310 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDIA 310 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCch
Confidence 9999999988432 2222211 1111 2345689999999987 4433445555666555555443
No 353
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.73 E-value=4.1e+02 Score=23.36 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=15.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccC
Q 042265 151 SLMHVYCVFHRLRDAQELFDEILYR 175 (490)
Q Consensus 151 ~li~~~~~~g~~~~A~~~~~~~~~~ 175 (490)
.++.-|...|+.++|...++++..|
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 4555566666666666666666544
No 354
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.71 E-value=1.7e+02 Score=18.98 Aligned_cols=60 Identities=5% Similarity=0.012 Sum_probs=36.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042265 233 NMMDLDIKPDNIALVSALSACARLG-ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY 293 (490)
Q Consensus 233 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (490)
.+.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556677766554 34455555543 445567777777776555566666666666666553
No 355
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.69 E-value=1.3e+02 Score=22.58 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=33.7
Q ss_pred HhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 042265 101 QMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL 162 (490)
Q Consensus 101 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 162 (490)
.+++.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3445565554432 33344444444 556777777776666555666655566666666654
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.64 E-value=1.7e+02 Score=21.38 Aligned_cols=43 Identities=12% Similarity=0.018 Sum_probs=21.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 042265 214 LVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL 256 (490)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 256 (490)
++..+...+.+-.|.++++.+.+.+...+..|....+..+...
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 4444444555556666666666555444444444444444333
No 357
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.40 E-value=1.4e+02 Score=22.21 Aligned_cols=35 Identities=9% Similarity=-0.027 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccH
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSF 114 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 114 (490)
..++..+...+++-.|.++++.+.+.+...+..|.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTV 51 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTV 51 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHH
Confidence 45666666666677788888887776544444443
No 358
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.38 E-value=2.6e+02 Score=20.49 Aligned_cols=15 Identities=7% Similarity=-0.042 Sum_probs=7.0
Q ss_pred HcCCCchhHHHHHHH
Q 042265 87 TLFSSPLNAVVLFSQ 101 (490)
Q Consensus 87 ~~~g~~~~A~~~~~~ 101 (490)
++.|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 444455444444444
No 359
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=20.13 E-value=2.4e+02 Score=27.87 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=47.9
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 397 EEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
+.|.++.+-|- ...............|++..|.++++.++..+|+|..+...++.+|.+.|.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45566666554 334444455667789999999999999999999999999999999887763
No 360
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.12 E-value=3.6e+02 Score=22.02 Aligned_cols=69 Identities=9% Similarity=0.003 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCH
Q 042265 325 GRLSLVYFSRMIEARIKPDGV-------TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLI 396 (490)
Q Consensus 325 ~~~A~~~~~~m~~~~~~p~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (490)
.+.|+.+|+.+.+.-..|+.. .-...+..|.+.|.+++|.+++++.. +..++..-....+....+..+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~---~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM---SKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh---cCCCCchHHHHHHHHHHhccCc
Done!