BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042267
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 111 bits (278), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 69/100 (69%)
Query: 8 LQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLIQ 67
++W+ H++ DE+C+K L+NCY+ALP++GKV+V LP PDS+ A++ +D I L
Sbjct: 264 MKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAH 323
Query: 68 IPHGRERTKKEFTALAIEAGFKGINFECNVCNSYVMEFYK 107
P G+ERT+KEF LA AGF+G CN N+Y+MEF K
Sbjct: 324 NPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%)
Query: 8 LQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLIQ 67
++W+ H++ DE+C+K+L+NCY ALP+ GKV+V LP PD + A++ DA+ L
Sbjct: 267 IKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAY 326
Query: 68 IPHGRERTKKEFTALAIEAGFKGINFECNVCNSYVMEFYK 107
P G+ERT+KEF ALA+ +GF+G N+YVMEF K
Sbjct: 327 NPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 93.6 bits (231), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/101 (40%), Positives = 65/101 (64%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLI 66
+++W+LH++ D++C +L+NCY ALP GKV+++ LP P++ +S+ F +D I L
Sbjct: 264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA 323
Query: 67 QIPHGRERTKKEFTALAIEAGFKGINFECNVCNSYVMEFYK 107
P GRER ++EF ALA AGF G+ N++ +EF K
Sbjct: 324 HNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLI 66
IL+ + HN+ DE CI+ L NC+KAL +GKV+++ LPE P+++E S+ LD + I
Sbjct: 272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI 331
Query: 67 QIPHGRERTKKEFTALAIEAGFKGINFECNVCNSY-VMEFYK 107
+ GRERT+K++ L+ +GF C NS VMEFYK
Sbjct: 332 TV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLI 66
IL+ + HN+ DE CI+ L NC+KAL +GKV+++ LPE P+++E S+ LD + I
Sbjct: 272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLXFI 331
Query: 67 QIPHGRERTKKEFTALAIEAGFKGINFECNVCNSY-VMEFYK 107
+ GRERT+K++ L+ +GF C NS V EFYK
Sbjct: 332 TV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVXEFYK 372
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPN---DGKVLVINSTLPEVPDSTEASRDSFILDAI 63
+L+W+LH+++DE +KIL+N +A+ + DGKV++I+ ++ E D + D +
Sbjct: 252 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLV 311
Query: 64 FLIQIPHGRERTKKEFTALAIEAGF 88
L G+ERTK+E+ L +AGF
Sbjct: 312 MLTMFL-GKERTKQEWEKLIYDAGF 335
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPN---DGKVLVINSTLPEVPDSTEASRDSFILDAI 63
+L+W+LH+++DE +KIL+N +A+ + DGKV++I+ ++ E D + D +
Sbjct: 255 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLV 314
Query: 64 FLIQIPHGRERTKKEFTALAIEAGF 88
L G+ERTK+E+ L +AGF
Sbjct: 315 MLTMFL-GKERTKQEWEKLIYDAGF 338
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPN---DGKVLVINSTLPEVPDSTEASRDSFILDAI 63
+L+W+LH+++DE +KIL+N +A+ + DGKV++I+ ++ E D + D +
Sbjct: 256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLV 315
Query: 64 FLIQIPHGRERTKKEFTALAIEAGF 88
L G+ERTK+E+ L +AGF
Sbjct: 316 MLTMFL-GKERTKQEWEKLIYDAGF 339
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPND---GKVLVINSTLPEVPDSTEASRDSFILDAI 63
+L+ +LH++ D++CIKIL+ C +A+ +D GKV+VI+ + E D + ++ +++
Sbjct: 256 LLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKLLMNVT 315
Query: 64 FLIQIPHGRERTKKEFTALAIEAGFK 89
I +G+ER ++E+ L IEAGF+
Sbjct: 316 --ISCVNGKERNEEEWKKLFIEAGFQ 339
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPND---GKVLVINSTLPEVPDSTEASRDSFILDAI 63
+L+++LHN+ D++C++IL+ C +A+ ND GKV +I+ + + D + ++ ++D
Sbjct: 251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVN 310
Query: 64 FLIQIPHGRERTKKEFTALAIEAGFK 89
+ +G+ER ++E+ L IEAGF+
Sbjct: 311 --MACLNGKERNEEEWKKLFIEAGFQ 334
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLI 66
+L+ +LHN+ DE+ ++IL NC + P G+VLVI++ +PE D+ ++ F +
Sbjct: 252 VLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGNDAHQSKEXDFX-----XL 306
Query: 67 QIPHGRERTKKEFTALAIEAGFK 89
G+ERT E L AG +
Sbjct: 307 AARTGQERTAAELEPLFTAAGLR 329
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPND---GKVLVINSTLPEVPDSTEASRDSFILDAI 63
+L+++LHN+ D++C++IL+ C +A+ ND GKV +I+ + + D + ++ + D
Sbjct: 251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVN 310
Query: 64 FLIQIPHGRERTKKEFTALAIEAGFK 89
+G+ER ++E+ L IEAGF+
Sbjct: 311 --XACLNGKERNEEEWKKLFIEAGFQ 334
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 3 VYLSILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDA 62
VYL ++ +LH++DD++ ++ILR A D ++LVI++ + E P ++ D +L
Sbjct: 271 VYL--IKHVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTLFVDLLLLVL 328
Query: 63 IFLIQIPHGRERTKKEFTALAIEAGFK 89
G ER++ EF AL ++G +
Sbjct: 329 ------VGGAERSESEFAALLEKSGLR 349
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLI 66
+L ++ + D+ +++L NC +A+ DG+V+VI T+ ++E S S + D + L
Sbjct: 238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI----SASEPSPMSVLWD-VHLF 292
Query: 67 QIPHGRERTKKEFTALAIEAGF 88
GR RT +E L GF
Sbjct: 293 MACAGRHRTTEEVVDLLGRGGF 314
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSF---ILDAI 63
+L ++L N+ DE+ + ILR C +AL G++LV++ D D F +LD +
Sbjct: 253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA-----DVEGDGADRFFSTLLD-L 306
Query: 64 FLIQIPHGRERTKKEFTALAIEAGF 88
++ GR RT+ E LA AG
Sbjct: 307 RMLTFMGGRVRTRDEVVDLAGSAGL 331
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSF---ILDAI 63
+L ++L N+ DE+ + ILR C +AL G++LV++ D D F +LD +
Sbjct: 253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA-----DVEGDGADRFFSTLLD-L 306
Query: 64 FLIQIPHGRERTKKEFTALAIEAGF 88
+ GR RT+ E LA AG
Sbjct: 307 RXLTFXGGRVRTRDEVVDLAGSAGL 331
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 5 LSILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIF 64
L IL +LH++ D C +L Y G +LVI S L E R +L ++
Sbjct: 247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE-------DRRGPLLTQLY 299
Query: 65 LIQI---PHGRERTKKEFTALAIEAGFKGINFE 94
+ + G+ERT + L AGF+ F+
Sbjct: 300 SLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK 332
>pdb|2R3S|A Chain A, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
pdb|2R3S|B Chain B, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
Length = 335
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 5 LSILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEAS-RDSFILDAI 63
L +L LH+FD C ++LR AL +GKV+V + +P+S + D+ +
Sbjct: 235 LVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF----IPNSDRITPPDAAAFSLV 290
Query: 64 FLIQIPHGRERTKKEFTALAIEAGF 88
L P+G T E+ + AGF
Sbjct: 291 XLATTPNGDAYTFAEYESXFSNAGF 315
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 7 ILQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLI 66
+L +LH++DD + + ILR C +A + G VLVI + + T + ++
Sbjct: 240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMD--------LRML 291
Query: 67 QIPHGRERTKKEFTALAIEAGF 88
G+ER+ E LA +AG
Sbjct: 292 TYFGGKERSLAELGELAAQAGL 313
>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|B Chain B, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|C Chain C, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|D Chain D, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|E Chain E, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|F Chain F, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
Length = 265
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 75 TKKEFTALAIEAGFKGINFECNVCNSYVMEFYK 107
TKK++ + E G I+ N NSY +EFYK
Sbjct: 6 TKKQYLTVFKEDGIAEIHLHINKSNSYDLEFYK 38
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 9 QWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLIQI 68
++ H+F D K +R + L DG+ L+++ PE P D F+ L
Sbjct: 94 RYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDP-----VLDEFVNHLNRLRDP 146
Query: 69 PHGRERTKKEFTA 81
H RE + E+ A
Sbjct: 147 SHVRESSLSEWQA 159
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 24 LRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLIQIPH 70
L C+ LP K+LV L E ++E++R F +A L + H
Sbjct: 59 LAECHNLLPEQDKMLVAVKALKE---ASESARQDFQREAELLTMLQH 102
>pdb|1VQR|A Chain A, Crystal Structure Of A Virulence Factor (Cj0248) From
Campylobacter Jejuni Subsp. Jejuni At 2.25 A Resolution
pdb|1VQR|B Chain B, Crystal Structure Of A Virulence Factor (Cj0248) From
Campylobacter Jejuni Subsp. Jejuni At 2.25 A Resolution
pdb|1VQR|C Chain C, Crystal Structure Of A Virulence Factor (Cj0248) From
Campylobacter Jejuni Subsp. Jejuni At 2.25 A Resolution
pdb|1VQR|D Chain D, Crystal Structure Of A Virulence Factor (Cj0248) From
Campylobacter Jejuni Subsp. Jejuni At 2.25 A Resolution
Length = 297
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 25/66 (37%)
Query: 56 DSFILDAIFLIQIPHG-RERTKKEFTALAI------------------------EAGFKG 90
D ++++I ++ PH RE+ KK ALAI EA +G
Sbjct: 214 DDVLIESICFVRTPHAAREKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQG 273
Query: 91 INFECN 96
INF+ N
Sbjct: 274 INFDLN 279
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 24 LRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLIQIPH 70
L C+ LP K+LV L E ++E++R F +A L + H
Sbjct: 36 LAECHNLLPEQDKMLVAVKALKE---ASESARQDFQREAELLTMLQH 79
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 24 LRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLIQIPH 70
L C+ LP K+LV L E ++E++R F +A L + H
Sbjct: 30 LAECHNLLPEQDKMLVAVKALKE---ASESARQDFQREAELLTMLQH 73
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 24 LRNCYKALPNDGKVLVINSTLPEVPDSTEASRDSFILDAIFLIQIPH 70
L CY P K+LV TL D+++ +R F +A L + H
Sbjct: 31 LAECYNLCPEQDKILVAVKTL---KDASDNARKDFHREAELLTNLQH 74
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 8 LQWMLHNFDDENCIKILRNCYKALPNDGKVLVINSTLPE 46
+QW++ + D++ + LR C +L +G +++ ++ E
Sbjct: 152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE 190
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 23 ILRNCYKALPNDGKVLVINSTLPEVPDSTEASRDS---------FILDAIFLIQIPHGRE 73
+ Y P+DG++L+ T+P+ ++ E S FIL IF P GR
Sbjct: 165 FFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF----PGGRL 220
Query: 74 RTKKEFTALAIEAGFK 89
+ + AG+K
Sbjct: 221 PRISQVDYYSSNAGWK 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,194,508
Number of Sequences: 62578
Number of extensions: 111644
Number of successful extensions: 425
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 32
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)