BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042269
         (727 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GGP|A Chain A, Crystal Structure Of Trichosanthes Kirilowii Lectin-1 And
           Its Relation To The Type 2 Ribosome Inactivating
           Proteins
          Length = 234

 Score = 32.7 bits (73), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 203 AAVTSFAYAIVPGYFFPSLGALSVVCWLWKDSV---TAQLIGSGRNGFGIGSFALDWNAI 259
           A   S+ +A  PG     L + S    L  D+     AQ  GS R    +G+ AL+    
Sbjct: 67  AGSNSYFHAAAPGSSLSHLFSRSSQHTLGFDNTYGDMAQAAGSNRKAIPLGAAALESGIA 126

Query: 260 AAYSGNPLVYPLSTIINMTTGFIFFLYI 287
           +  S NPL   L  II M      F YI
Sbjct: 127 SLNSKNPLARTLMVIIQMLVEAARFRYI 154


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,253,482
Number of Sequences: 62578
Number of extensions: 879315
Number of successful extensions: 2071
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2069
Number of HSP's gapped (non-prelim): 2
length of query: 727
length of database: 14,973,337
effective HSP length: 106
effective length of query: 621
effective length of database: 8,340,069
effective search space: 5179182849
effective search space used: 5179182849
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)