Query 042269
Match_columns 727
No_of_seqs 171 out of 1143
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 1E-192 3E-197 1564.0 42.4 715 1-727 46-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 2E-176 5E-181 1507.8 56.0 676 3-694 1-679 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 4E-127 9E-132 1120.1 53.5 639 9-691 1-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 7E-120 1E-124 1057.0 46.0 616 25-689 1-624 (624)
5 TIGR00733 putative oligopeptid 100.0 1.6E-70 3.4E-75 627.6 49.4 551 25-688 1-589 (591)
6 COG1297 Predicted membrane pro 100.0 1.2E-58 2.6E-63 505.5 34.2 571 19-695 8-620 (624)
7 PF03169 OPT: OPT oligopeptide 91.1 7.2 0.00016 46.5 17.3 210 21-286 349-589 (624)
8 COG0628 yhhT Predicted permeas 81.6 31 0.00067 38.0 14.5 166 362-543 166-337 (355)
9 TIGR02872 spore_ytvI sporulati 68.0 1.8E+02 0.0039 31.3 17.0 42 497-538 286-331 (341)
10 PF01594 UPF0118: Domain of un 57.0 1.7E+02 0.0036 31.5 13.0 57 484-540 259-320 (327)
11 PRK10983 putative inner membra 53.9 3.5E+02 0.0076 30.1 15.7 47 494-540 288-338 (368)
12 TIGR00733 putative oligopeptid 45.4 6E+02 0.013 30.3 20.5 228 432-685 2-265 (591)
13 PRK12287 tqsA pheromone autoin 44.6 4.6E+02 0.0099 28.7 17.4 49 489-537 266-319 (344)
14 PF03606 DcuC: C4-dicarboxylat 41.1 1.2E+02 0.0027 34.8 9.3 19 403-421 251-269 (465)
15 TIGR02106 cyd_oper_ybgT cyd op 32.5 45 0.00097 23.3 2.3 18 30-47 5-22 (30)
16 PF02673 BacA: Bacitracin resi 32.3 6.3E+02 0.014 26.7 16.6 28 516-543 213-240 (259)
17 PRK14749 hypothetical protein; 30.0 53 0.0012 22.8 2.3 18 30-47 5-22 (30)
18 PF08173 YbgT_YccB: Membrane b 29.4 55 0.0012 22.5 2.3 18 30-47 5-22 (28)
19 PF10669 Phage_Gp23: Protein g 24.3 1.2E+02 0.0026 26.9 4.1 30 348-377 11-40 (121)
20 COG4890 Predicted outer membra 23.4 80 0.0017 22.6 2.3 18 30-47 5-22 (37)
21 PF09512 ThiW: Thiamine-precur 21.4 3.4E+02 0.0074 26.3 6.9 27 515-541 90-117 (150)
22 PF07907 YibE_F: YibE/F-like p 20.8 6.6E+02 0.014 26.3 9.7 96 511-626 121-216 (244)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-192 Score=1563.97 Aligned_cols=715 Identities=48% Similarity=0.989 Sum_probs=699.8
Q ss_pred CCCCCCchhhhhccCCCCCCCCCCccchhhhhhhhHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhcCCc
Q 042269 1 DEINDSPIEQVRLTIPITDDPTLPTLTFRTWAIGPITCMVLAFVKEFFSYRQNPIGLSTTCIQILLLGLGKLMASTLPST 80 (727)
Q Consensus 1 ~~~~~sp~~~vr~~v~~~ddp~~p~~T~Ra~~lG~il~~~~a~~n~~f~lk~~~~~~~~i~~~ll~~~~g~~~a~~lP~~ 80 (727)
+++|||||||||++||.+|||++|++|||+|++|++.|++++++||+|++|++.++++.+.+|++.+|+||+|+|+||+|
T Consensus 46 ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~~ 125 (761)
T KOG2262|consen 46 EDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPTW 125 (761)
T ss_pred cccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCce
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccccCCCCCCchhhHHHhhhhhccccchhhhHHHHHHHHHhccCCCHHHHHHHHHHhhhHhHHHhhhcccc
Q 042269 81 LLKVPGTNWTFSMNPGPFNIKEHVLLCVLATSGLSVPSSATILTVRKVFYHKYLNFWVGLLLTLTSQMLGYGFAGIFMKF 160 (727)
Q Consensus 81 ~~~~~~~~~~~~lNPgpf~~kE~~li~~~Asaa~~~~~a~~~i~~~~~~y~~~~~~~~~i~~~ls~q~lG~~~Ag~lR~~ 160 (727)
++++ +++|+|+|||||||.|||++++++|+++++.+||++++.+|++||++++++++++++++++|++|||+||++||+
T Consensus 126 ~~~~-~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAGl~Rk~ 204 (761)
T KOG2262|consen 126 KFGL-GGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAGLFRKY 204 (761)
T ss_pred eeec-CcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHhhhhHhh
Confidence 9987 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcCCchHHHHHHHHHhhhccCCCCcCCcchHHHHHHHHHHHHHHHhcccchhhcccccchhhhhccCccceeee
Q 042269 161 LVNNPYMWYPFTLVDVFLYRSIHEVMKSRPQRGITKFQFFILAAVTSFAYAIVPGYFFPSLGALSVVCWLWKDSVTAQLI 240 (727)
Q Consensus 161 lV~~~~l~~P~~lata~l~~slh~~~~~~~~~~~s~~k~f~~~f~~~~~~~~lp~y~~p~L~~~~~~~wi~p~~~~~~~i 240 (727)
+|+|.+|.||++|++++|+|+||++ |++++.+++|+|||+++|.+||+|+|+|+|+||+|++++|.||+.|+|.+++|+
T Consensus 205 lV~Pa~m~WPsnLvqvsLFraLHek-e~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi 283 (761)
T KOG2262|consen 205 LVYPASMWWPSNLVQVSLFRALHEK-ENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQI 283 (761)
T ss_pred ccCcHhhcCcchhHHHHHHHHHHhh-hhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHh
Confidence 9999999999999999999999998 877766799999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccchhhhhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCceeec
Q 042269 241 GSGRNGFGIGSFALDWNAIAAYSGNPLVYPLSTIINMTTGFIFFLYIITPIAYFTNSNNARHFPFSSTRLFDKYGHLYNV 320 (727)
Q Consensus 241 ~g~~~GlGl~~~tfDws~i~~~~g~pl~~p~~~~~~~~~G~vl~~~il~P~~~~~n~~~~~~~P~~s~~~fd~~g~~y~~ 320 (727)
|||.+|||+.|+||||++|++|+|||+.+|+++.+|.++|+++..+|+.|++||+|.|+++++|+.|+++||++|++||+
T Consensus 284 ~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~tG~sYnv 363 (761)
T KOG2262|consen 284 GSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTNTYDAKYFPIFSSSLFDHTGNSYNV 363 (761)
T ss_pred cccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhccceecceeceecCcceecCCcEece
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCccccchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCCcchhhhhhhhc
Q 042269 321 SKVVKDTDLTFNSKAYQGYSNLYLSVVYLFALGFEFAAVTASLSHFIAFYGRDAWQQFKQAYVSSNNSTEDVHNRLMKKY 400 (727)
Q Consensus 321 s~il~~~~~~ln~~~y~~~~p~~~~~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~~~~D~h~~lm~~y 400 (727)
++|+| +|++||.+|||+|||+|+++.|+++||++||+++|.++|++|+|+||||++.|++. ++++|+|.|+||+|
T Consensus 364 t~Il~-~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~~----~k~~DiHtrlMkkY 438 (761)
T KOG2262|consen 364 TKILD-SKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKAF----NKKMDIHTRLMKKY 438 (761)
T ss_pred eeeec-CccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhcc----ccCCCHHHHHHHHh
Confidence 99999 99999999999999999999999999999999999999999999999999999873 67899999999999
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhhhccccCcchhHHHHHHHHHHHHHHhhheeeEEeeCCcchhhHHHHHhhhhhcCCch
Q 042269 401 KPVPQCWYLAILITAVGLAILSCEAFGDQLQLPYWGILFSCLLILIFVLPLGVLQATTGQYISLNLISEMLVGYIYPGKP 480 (727)
Q Consensus 401 ~~vP~ww~~~~~v~~~v~~~~~~~~~~~~~~lp~~~~ila~~la~v~~~~~g~~~g~T~~~~~l~~~sqli~g~~~pg~~ 480 (727)
||||+|||+++++++++++++++++|+++.|+|||++++|+++++++.+|.|+++|+||++||+|+++|+|.||++||||
T Consensus 439 KeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~PgrP 518 (761)
T KOG2262|consen 439 KEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIYPGRP 518 (761)
T ss_pred ccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhcCCch
Confidence 99999999999999999999999999877799999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhccccCCCCCCCCCCCccc
Q 042269 481 IANMVFKAYSVTAEDFALAFISELKLAHYMKIAPKSMFVAQIIGTFVSSVVGFATSWWLLSAVEHICDPKNLPKGSPWTC 560 (727)
Q Consensus 481 ~anl~~~~~~~~~~~qa~~~~~DlK~Ghy~k~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~~t~ 560 (727)
+|||.||.||+.++.||..++||+|+|||||+|||.||.+|++||+++++|+.+|.+|++.+++|+|+.+ +++.|||
T Consensus 519 iAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~---~~s~~TC 595 (761)
T KOG2262|consen 519 IANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTD---QNSPWTC 595 (761)
T ss_pred HHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCC---CCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred cchhhhhhhhhhhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHhHhhhccccchhh
Q 042269 561 PSKNNAYSTSVVWGVIGPQRMFYPHGLYSKLFYFFLIGLICPLLVWVLSKFFPEKKWIKDINVSNLLGGKVAVAVGGATS 640 (727)
Q Consensus 561 p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~l~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~~~g~~~~~p~~~~~ 640 (727)
|.++++|++||+||++||+|+|+.++.|+.+.|+|++|+++|+++|+++|++|+++|.+++|+|+++.|.+++||++..|
T Consensus 596 P~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vn 675 (761)
T KOG2262|consen 596 PSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVN 675 (761)
T ss_pred CCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCcccccccceeeehhhHhhhHHHHHHHHHHHhcCCCCCccccccCCCC-CCCCCCCCCCCcc
Q 042269 641 FLSFVTVGFVYNLVVYRKYKDWWAKYNYVLSNGLDVGVAFLSLLTSLCLGMSDIYGVNWWGLDAGD-HCPLAQCPTAPGV 719 (727)
Q Consensus 641 ~~~~~~vg~~~~~~~rr~~~~w~~kynyvlaagL~aG~~i~~vi~~~~~~~~g~~~~~wwG~n~~~-~c~~~~~~~~~~~ 719 (727)
|++++++|+++++++|||++.||+||||+||||||+|.++++++++||+|+.|+ ..+||| |+++ +|+..+|+.+++.
T Consensus 676 y~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~-~~~WWG-n~~~~~c~~a~cp~~~~v 753 (761)
T KOG2262|consen 676 YTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGI-SLNWWG-NTVSAGCDLAGCPTAKGV 753 (761)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCC-cccccc-CcCCCCCCccCCCcCCee
Confidence 999999999999999999999999999999999999999999999999999999 668999 8774 9999999999999
Q ss_pred ccCCCCCC
Q 042269 720 SVDGCPAP 727 (727)
Q Consensus 720 ~~~~~~~~ 727 (727)
..++||.+
T Consensus 754 ~~~~~~~f 761 (761)
T KOG2262|consen 754 VVSGCPVF 761 (761)
T ss_pred ecCCCCCC
Confidence 99999875
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=2.2e-176 Score=1507.83 Aligned_cols=676 Identities=32% Similarity=0.674 Sum_probs=657.8
Q ss_pred CCCCchhhhhccCCCCCCCCCCccchhhhhhhhHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhcCCccc
Q 042269 3 INDSPIEQVRLTIPITDDPTLPTLTFRTWAIGPITCMVLAFVKEFFSYRQNPIGLSTTCIQILLLGLGKLMASTLPSTLL 82 (727)
Q Consensus 3 ~~~sp~~~vr~~v~~~ddp~~p~~T~Ra~~lG~il~~~~a~~n~~f~lk~~~~~~~~i~~~ll~~~~g~~~a~~lP~~~~ 82 (727)
||||||||||++|+++|||++|++|+|+|++|++++++++++||+|++|+|.++++++++||++|++||+|+|++|++++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccCCCCCCchhhHHHhhhhhccccchhhhHHHHHHHHHhccCCCHHHHHHHHHHhhhHhHHHhhhcccccc
Q 042269 83 KVPGTNWTFSMNPGPFNIKEHVLLCVLATSGLSVPSSATILTVRKVFYHKYLNFWVGLLLTLTSQMLGYGFAGIFMKFLV 162 (727)
Q Consensus 83 ~~~~~~~~~~lNPgpf~~kE~~li~~~Asaa~~~~~a~~~i~~~~~~y~~~~~~~~~i~~~ls~q~lG~~~Ag~lR~~lV 162 (727)
++.| ++|+|||||||+|||+++|+||+++.+.+|+++++.+|++||++++++++++++++++|++|+++||++||++|
T Consensus 81 ~~~g--~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV 158 (681)
T TIGR00727 81 TIRG--RKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVV 158 (681)
T ss_pred cccc--ceeccCCCCCChhcceeeeeeeehhccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEe
Confidence 8865 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCchHHHHHHHHHhhhccCCCC--cCCcchHHHHHHHHHHHHHHHhcccchhhcccccchhhhhccCccceeee
Q 042269 163 NNPYMWYPFTLVDVFLYRSIHEVMKSRP--QRGITKFQFFILAAVTSFAYAIVPGYFFPSLGALSVVCWLWKDSVTAQLI 240 (727)
Q Consensus 163 ~~~~l~~P~~lata~l~~slh~~~~~~~--~~~~s~~k~f~~~f~~~~~~~~lp~y~~p~L~~~~~~~wi~p~~~~~~~i 240 (727)
+|++|+||++|++++|+|+||++ +++. .+++||+|+|+++|+++|+|+|+|+|+||+|+.|||.||++|+|+++|++
T Consensus 159 ~p~~~iwPs~L~t~aL~~aLH~~-~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i 237 (681)
T TIGR00727 159 YPARALWPTNLVTITINKALHGK-ENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQI 237 (681)
T ss_pred ccccCcCCCccHHHHHHHHHhcc-CcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhh
Confidence 99999999999999999999986 4332 24579999999999999999999999999999999999999999999999
Q ss_pred Ccccccccccc-cccchhhhhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCceee
Q 042269 241 GSGRNGFGIGS-FALDWNAIAAYSGNPLVYPLSTIINMTTGFIFFLYIITPIAYFTNSNNARHFPFSSTRLFDKYGHLYN 319 (727)
Q Consensus 241 ~g~~~GlGl~~-~tfDws~i~~~~g~pl~~p~~~~~~~~~G~vl~~~il~P~~~~~n~~~~~~~P~~s~~~fd~~g~~y~ 319 (727)
||+.+|||++| +|||||+|+++.|+|+++|+++++|+++|.+++++++.|++||+|.|+++|+|++|+++||++|++||
T Consensus 238 ~g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~ 317 (681)
T TIGR00727 238 FGGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYN 317 (681)
T ss_pred hccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCccc
Confidence 99999999999 89999999878899999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCccccchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCCcchhhhhhhh
Q 042269 320 VSKVVKDTDLTFNSKAYQGYSNLYLSVVYLFALGFEFAAVTASLSHFIAFYGRDAWQQFKQAYVSSNNSTEDVHNRLMKK 399 (727)
Q Consensus 320 ~s~il~~~~~~ln~~~y~~~~p~~~~~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~~~~D~h~~lm~~ 399 (727)
+++|++ +|+++|++|||||||+|++++++++||.+||+++++++|++|+|||||++++|+ ++++|+|.|+||+
T Consensus 318 vs~il~-~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~------~~~~D~h~rlM~~ 390 (681)
T TIGR00727 318 VTEILD-KDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD------DDYPDPHSNLMKA 390 (681)
T ss_pred cceeeC-CCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc------CCCCChhHHHhhc
Confidence 999999 999999999999999999999999999999999999999999999999998873 4578999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHhhhhhhccccCcchhHHHHHHHHHHHHHHhhheeeEEeeCCcchhhHHHHHhhhhhcCCc
Q 042269 400 YKPVPQCWYLAILITAVGLAILSCEAFGDQLQLPYWGILFSCLLILIFVLPLGVLQATTGQYISLNLISEMLVGYIYPGK 479 (727)
Q Consensus 400 y~~vP~ww~~~~~v~~~v~~~~~~~~~~~~~~lp~~~~ila~~la~v~~~~~g~~~g~T~~~~~l~~~sqli~g~~~pg~ 479 (727)
|||||+|||++++++++++++++++++ ++++|||++++|+++++++.+|.|+++|+||+++++|+++|+|+|++.|||
T Consensus 391 Y~evP~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~ 468 (681)
T TIGR00727 391 YKEVPDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGR 468 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCC
Confidence 999999999999999999999999998 789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhccccCCCCCCCCCCCcc
Q 042269 480 PIANMVFKAYSVTAEDFALAFISELKLAHYMKIAPKSMFVAQIIGTFVSSVVGFATSWWLLSAVEHICDPKNLPKGSPWT 559 (727)
Q Consensus 480 ~~anl~~~~~~~~~~~qa~~~~~DlK~Ghy~k~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~~t 559 (727)
|+|||+||++++++.+||.+++||||+|||||+|||+||.+|++||++|++|+++|++|++++++|+|+++ ++++||
T Consensus 469 p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~---~~~~ft 545 (681)
T TIGR00727 469 PLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTAD---QNAKYT 545 (681)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---CCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred ccchhhhhhhhhhhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHhHhhhccccchh
Q 042269 560 CPSKNNAYSTSVVWGVIGPQRMFYPHGLYSKLFYFFLIGLICPLLVWVLSKFFPEKKWIKDINVSNLLGGKVAVAVGGAT 639 (727)
Q Consensus 560 ~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~l~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~~~g~~~~~p~~~~ 639 (727)
||..++++++||+||++||+|+|++|++|+.++|+|++|+++|+++|+++|++||+ +.|++|.|+++.|++++||++++
T Consensus 546 cp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~-~~~~~n~pv~~~~~g~~~~a~~~ 624 (681)
T TIGR00727 546 CPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKF-YPRYLDWPMLFVGTGYIPPATPY 624 (681)
T ss_pred CCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhCCccHHHhhccccCCcchh
Confidence 99999999999999999999999999999999999999999999999999999976 78999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCcccccccceeeehhhHhhhHHHHHHHHHHHhcCCC
Q 042269 640 SFLSFVTVGFVYNLVVYRKYKDWWAKYNYVLSNGLDVGVAFLSLLTSLCLGMSDI 694 (727)
Q Consensus 640 ~~~~~~~vg~~~~~~~rr~~~~w~~kynyvlaagL~aG~~i~~vi~~~~~~~~g~ 694 (727)
|++++.++|+++|+|+||||++||+||||++|||||+|+++++++++|+++++++
T Consensus 625 n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 625 NYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDT 679 (681)
T ss_pred hHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999876
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=4.2e-127 Score=1120.14 Aligned_cols=639 Identities=35% Similarity=0.661 Sum_probs=585.2
Q ss_pred hhhhccCCCCCCCCCCccchhhhhhhhHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhcCCcccccCCcc
Q 042269 9 EQVRLTIPITDDPTLPTLTFRTWAIGPITCMVLAFVKEFFSYRQNPIGLSTTCIQILLLGLGKLMASTLPSTLLKVPGTN 88 (727)
Q Consensus 9 ~~vr~~v~~~ddp~~p~~T~Ra~~lG~il~~~~a~~n~~f~lk~~~~~~~~i~~~ll~~~~g~~~a~~lP~~~~~~~~~~ 88 (727)
||||+ ||++|||++|++|+|+|++|++++++++++|+||+||+|+++.+++++|+++|+++|+|+|++|+|+ +
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~------~ 73 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE------G 73 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc------c
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999985 3
Q ss_pred cccccCCCCCCchhhHHHhhhhhccccchhhhHHHHHHHHHhccCCCHHHHHHHHHHhhh--HhHHHhhhcccccccCCC
Q 042269 89 WTFSMNPGPFNIKEHVLLCVLATSGLSVPSSATILTVRKVFYHKYLNFWVGLLLTLTSQM--LGYGFAGIFMKFLVNNPY 166 (727)
Q Consensus 89 ~~~~lNPgpf~~kE~~li~~~Asaa~~~~~a~~~i~~~~~~y~~~~~~~~~i~~~ls~q~--lG~~~Ag~lR~~lV~~~~ 166 (727)
+||+|||||||+|||+++|+|||++++.+++.+.+.+|+.||+++.++++++++++++|+ +|+++|+++||++|+|++
T Consensus 74 ~~~~lnpgpft~kE~~~iq~~asa~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~ 153 (654)
T TIGR00728 74 WKFSLNPGPFNVKENNLIQTAASACGGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAK 153 (654)
T ss_pred cceecCCCCCChhhheeEEeeeeccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCccc
Confidence 789999999999999999999999999888888999999999999999998888888888 999999999999999999
Q ss_pred CcCCchHHHHHHHHHhhhccCCCCc-CCcchHHHHHHHHHHHHHHHhcccchhhcccccchhhhhccCccceeeeCcccc
Q 042269 167 MWYPFTLVDVFLYRSIHEVMKSRPQ-RGITKFQFFILAAVTSFAYAIVPGYFFPSLGALSVVCWLWKDSVTAQLIGSGRN 245 (727)
Q Consensus 167 l~~P~~lata~l~~slh~~~~~~~~-~~~s~~k~f~~~f~~~~~~~~lp~y~~p~L~~~~~~~wi~p~~~~~~~i~g~~~ 245 (727)
|+||+++|+++++|+||++ .++++ ++++| +.... |.++|+.+..++|+||+.|++..++ +||
T Consensus 154 l~~P~~la~a~l~~al~~~-~~~~~g~~~~r--~l~~~----------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg--- 216 (654)
T TIGR00728 154 LPWPSGLATAELFKALHGK-FHTANGDTIAK--NLLRV----------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG--- 216 (654)
T ss_pred ccCCcccHHHHHHHHhhhc-cCccCCCccch--hHHHh----------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---
Confidence 9999999999999999875 33322 22343 22111 4566677778899999999887775 444
Q ss_pred cccccccccchhhhhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCceeec-eeee
Q 042269 246 GFGIGSFALDWNAIAAYSGNPLVYPLSTIINMTTGFIFFLYIITPIAYFTNSNNARHFPFSSTRLFDKYGHLYNV-SKVV 324 (727)
Q Consensus 246 GlGl~~~tfDws~i~~~~g~pl~~p~~~~~~~~~G~vl~~~il~P~~~~~n~~~~~~~P~~s~~~fd~~g~~y~~-s~il 324 (727)
|+|+++++|||+++++++|+|+++|+++++|+++|++++|+++.|++||+|+|.++++|++|++.||++|.+|+. ++++
T Consensus 217 glg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il 296 (654)
T TIGR00728 217 GLGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIV 296 (654)
T ss_pred cccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEE
Confidence 788999999999987789999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ecCc-cccchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCCcchhhhhhhh----
Q 042269 325 KDTD-LTFNSKAYQGYSNLYLSVVYLFALGFEFAAVTASLSHFIAFYGRDAWQQFKQAYVSSNNSTEDVHNRLMKK---- 399 (727)
Q Consensus 325 ~~~~-~~ln~~~y~~~~p~~~~~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~~~~D~h~~lm~~---- 399 (727)
+ ++ +++|+++|++||++|+++++ |+.+|+.++++++|.+++|+|++++++|+.. ++.+|.|.|+||+
T Consensus 297 ~-~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~ 368 (654)
T TIGR00728 297 V-DGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRDIISARRDHY----KLGRDDHVRLLSRDEDL 368 (654)
T ss_pred e-CCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh----hccCCCChHHHhhcccc
Confidence 8 55 79999999999999999999 8999999999999999999999999887664 2334555555444
Q ss_pred ----cCCCChhHHHHHHHHHHHHHhhhhhhccccCcchhHHHHHHHHHHHHHHhhheeeEEeeCCcchhhHHHHHhhhhh
Q 042269 400 ----YKPVPQCWYLAILITAVGLAILSCEAFGDQLQLPYWGILFSCLLILIFVLPLGVLQATTGQYISLNLISEMLVGYI 475 (727)
Q Consensus 400 ----y~~vP~ww~~~~~v~~~v~~~~~~~~~~~~~~lp~~~~ila~~la~v~~~~~g~~~g~T~~~~~l~~~sqli~g~~ 475 (727)
|+|+|+|||+.+++++++++++++++++..+++|||++++++++++++++|.++++|+||...++++++|+++|++
T Consensus 369 ~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~ 448 (654)
T TIGR00728 369 KVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYI 448 (654)
T ss_pred cccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheee
Confidence 5999999999999999999999988885557899999999999999999999999999988889999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhccccCCCCCCCCC
Q 042269 476 YPGKPIANMVFKAYSVTAEDFALAFISELKLAHYMKIAPKSMFVAQIIGTFVSSVVGFATSWWLLSAVEHICDPKNLPKG 555 (727)
Q Consensus 476 ~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~Ghy~k~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~ 555 (727)
+||+|++||+++++++++++||+|++||||+|||+|+|||+||.+|++|+++|+++++++++|+.+++++ ++
T Consensus 449 ~pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~--------~~ 520 (654)
T TIGR00728 449 LPGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN--------QN 520 (654)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988863 55
Q ss_pred CCccccchhhhhhhhhhhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHhHhhhccc
Q 042269 556 SPWTCPSKNNAYSTSVVWGVIGPQRMFYPHGLYSKLFYFFLIGLICPLLVWVLSKFFPEKKWIKDINVSNLLGGKVAVAV 635 (727)
Q Consensus 556 ~~~t~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~l~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~~~g~~~~~p 635 (727)
++|+||.+++++++|++||++||+ +|+.+++|..+.|++++| +++++.+++||++|| |.|++|+|+++.+...+||
T Consensus 521 ~~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~--~~~~~~~~~~~~~~~~lp~ 596 (654)
T TIGR00728 521 NNFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK--WIKYINPPVAVGGGGYIPP 596 (654)
T ss_pred CCccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc--hhhhcCHHHhhhhhhccCC
Confidence 789999999999999999999999 999999999999999999 899999999999986 6789999998888888898
Q ss_pred cchhhhhHHHHHHHHHHHHHHhcCcccc--cccceeeehhhHhhhHHHHHHHHHHHhc
Q 042269 636 GGATSFLSFVTVGFVYNLVVYRKYKDWW--AKYNYVLSNGLDVGVAFLSLLTSLCLGM 691 (727)
Q Consensus 636 ~~~~~~~~~~~vg~~~~~~~rr~~~~w~--~kynyvlaagL~aG~~i~~vi~~~~~~~ 691 (727)
..+.++.++.++|.++++++|||+++|| +||||++|||||+||+|+++++||++++
T Consensus 597 ~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 597 ATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred cchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHhccC
Confidence 8888999999999999999999888876 9999999999999999999999999875
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=6.9e-120 Score=1057.04 Aligned_cols=616 Identities=35% Similarity=0.654 Sum_probs=572.1
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhcCCcccccCCcccccccCCCCCCchhhH
Q 042269 25 TLTFRTWAIGPITCMVLAFVKEFFSYRQNPIGLSTTCIQILLLGLGKLMASTLPSTLLKVPGTNWTFSMNPGPFNIKEHV 104 (727)
Q Consensus 25 ~~T~Ra~~lG~il~~~~a~~n~~f~lk~~~~~~~~i~~~ll~~~~g~~~a~~lP~~~~~~~~~~~~~~lNPgpf~~kE~~ 104 (727)
|+|+|++++|++++++++++|+||++|+|+++.+++++|+++|+++|.++|. ++++++||||||+||||
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~-----------~~~~~ln~gp~~~kE~~ 69 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI-----------GWRFSLNPGPFTIKENN 69 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh-----------ccccccCCCCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999972 14677999999999999
Q ss_pred HHhhhhhccccchhhhHHHHHHH--HHhccCCCHHHHHHHHHHhhhHhHHHhhhcccccccCCCCcCCchHHHHHHHHHh
Q 042269 105 LLCVLATSGLSVPSSATILTVRK--VFYHKYLNFWVGLLLTLTSQMLGYGFAGIFMKFLVNNPYMWYPFTLVDVFLYRSI 182 (727)
Q Consensus 105 li~~~Asaa~~~~~a~~~i~~~~--~~y~~~~~~~~~i~~~ls~q~lG~~~Ag~lR~~lV~~~~l~~P~~lata~l~~sl 182 (727)
++|++||+++++++++++++++| .||++++++++++++++++|++|+++|+++||++|+|++|+||+++|+++++++|
T Consensus 70 ~vq~~asa~~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~al 149 (624)
T PF03169_consen 70 LVQTMASAAGGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINAL 149 (624)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHh
Confidence 99999999999899999999955 5889999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCcCCcchHHHHHHHHHHHHHHHhcccchhhcccccchhhhhccCccceeeeCcccccccccccccchhhhhhh
Q 042269 183 HEVMKSRPQRGITKFQFFILAAVTSFAYAIVPGYFFPSLGALSVVCWLWKDSVTAQLIGSGRNGFGIGSFALDWNAIAAY 262 (727)
Q Consensus 183 h~~~~~~~~~~~s~~k~f~~~f~~~~~~~~lp~y~~p~L~~~~~~~wi~p~~~~~~~i~g~~~GlGl~~~tfDws~i~~~ 262 (727)
|++ + +.+.+++|+|+|+++|+++++|+|+|+|++|+|+.++|+||++|+|...++++|+.. ++||||++ +
T Consensus 150 h~~-~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~--~ 219 (624)
T PF03169_consen 150 HSG-G-GWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPI--L 219 (624)
T ss_pred ccC-c-cchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHH--h
Confidence 997 5 223357999999999999999999999999999999999999999999999988654 89999996 4
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCCccccccccCceeeceeeeecCccccchhhhhhcCC
Q 042269 263 SGNPLVYPLSTIINMTTGFIFFLYIITPIAYFT-NSNNARHFPFSSTRLFDKYGHLYNVSKVVKDTDLTFNSKAYQGYSN 341 (727)
Q Consensus 263 ~g~pl~~p~~~~~~~~~G~vl~~~il~P~~~~~-n~~~~~~~P~~s~~~fd~~g~~y~~s~il~~~~~~ln~~~y~~~~p 341 (727)
+|+|+++|+++++|+++|.+++|+++.|++||+ |.|+++++|++|+++||++|+ +|+++|+++|++|++
T Consensus 220 ~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~----------~~~~~~~~~~~~~g~ 289 (624)
T PF03169_consen 220 IGSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS----------SDGTLNWTKYIGYGP 289 (624)
T ss_pred cCCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc----------cccccCHHHHHHHHH
Confidence 799999999999999999999999999999997 999999999999999999997 467889999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh---hccCCCCcchhhhhhhhcCCCChhHHHHHHHHHHHH
Q 042269 342 LYLSVVYLFALGFEFAAVTASLSHFIAFYGRDAWQQFKQAY---VSSNNSTEDVHNRLMKKYKPVPQCWYLAILITAVGL 418 (727)
Q Consensus 342 ~~~~~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~---~~~~~~~~D~h~~lm~~y~~vP~ww~~~~~v~~~v~ 418 (727)
++.+..+.++|+..|+.+++.++|.+++|+|++++.+|+.. ++.+++++|+|+++||+|+|+|+|||+.++++++++
T Consensus 290 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~ 369 (624)
T PF03169_consen 290 MYGSGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVL 369 (624)
T ss_pred HHHhHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998886542 223456789999999999999999999999999999
Q ss_pred HhhhhhhccccCcchhHHHHHHHHHHHHHHhhheeeEEeeCCcc--hhhHHHHHhhhhhcCCchhHHHHHHHHHHHHHHH
Q 042269 419 AILSCEAFGDQLQLPYWGILFSCLLILIFVLPLGVLQATTGQYI--SLNLISEMLVGYIYPGKPIANMVFKAYSVTAEDF 496 (727)
Q Consensus 419 ~~~~~~~~~~~~~lp~~~~ila~~la~v~~~~~g~~~g~T~~~~--~l~~~sqli~g~~~pg~~~anl~~~~~~~~~~~q 496 (727)
++++++.+.+++++|+|+.++++++++++++|.++++|+||+|| ++++++|+++|++.||+|++||+++++++++++|
T Consensus 370 ~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~q 449 (624)
T PF03169_consen 370 AIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQ 449 (624)
T ss_pred HHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999988555899999999999999999999999999999976 8999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhccccCCCCCCCCCCCccccchhhhhhhhhhhhhc
Q 042269 497 ALAFISELKLAHYMKIAPKSMFVAQIIGTFVSSVVGFATSWWLLSAVEHICDPKNLPKGSPWTCPSKNNAYSTSVVWGVI 576 (727)
Q Consensus 497 a~~~~~DlK~Ghy~k~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~~t~p~~~~~~~~sv~wg~~ 576 (727)
|+|++||||+|||+|+|||+||.+|++|+++|++|++++++++ +..+.|.++ ++++++||.+|++++++++||++
T Consensus 450 a~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~~~~~~~~ap~a~~~aav~~g~~ 524 (624)
T PF03169_consen 450 AGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL--NQAYPCGPD---QGDSFSCPAPQAFAWAAVAWGLI 524 (624)
T ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCcc---ccccCcCcchHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999 445566554 55589999999999999999999
Q ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHhHhhhccccchhhhhHHHHHHHHHHHHHH
Q 042269 577 GPQRMFYPHGLYSKLFYFFLIGLICPLLVWVLSKFFPEKKWIKDINVSNLLGGKVAVAVGGATSFLSFVTVGFVYNLVVY 656 (727)
Q Consensus 577 gp~~~f~~g~~y~~l~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vg~~~~~~~r 656 (727)
||+| +.+|..++|++++|++++++.++++|++|+ ++++.|...+++..+.++++++++|.++++++|
T Consensus 525 ~~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~---------~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~ 591 (624)
T PF03169_consen 525 GPQR----GLPYSALPWGFLIGAVLPILFWLLQRKFPS---------PLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWR 591 (624)
T ss_pred CCcc----cchHHHHHHHHHHHHHHHHHHHHHHhhCCh---------hheeeecccccccchhHHHHHHHHHHHHHHHhh
Confidence 9877 689999999999999999999999988884 244555666777777889999999999999999
Q ss_pred hcCcccccccceeeehhhHhhhHHHHHHHHHHH
Q 042269 657 RKYKDWWAKYNYVLSNGLDVGVAFLSLLTSLCL 689 (727)
Q Consensus 657 r~~~~w~~kynyvlaagL~aG~~i~~vi~~~~~ 689 (727)
||+++||+||||++|||||+||+++++++++++
T Consensus 592 ~~~~~~~~~y~~~laagl~aG~~l~~li~~~~~ 624 (624)
T PF03169_consen 592 RRYPKWWEKYNYVLAAGLIAGEALMGLIIAFLV 624 (624)
T ss_pred hcchhHHHhHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998764
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=1.6e-70 Score=627.60 Aligned_cols=551 Identities=14% Similarity=0.128 Sum_probs=422.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhcCCcccccCCcccccccCCCCCCchhhH
Q 042269 25 TLTFRTWAIGPITCMVLAFVKEFFSYRQNPIGLSTTCIQILLLGLGKLMASTLPSTLLKVPGTNWTFSMNPGPFNIKEHV 104 (727)
Q Consensus 25 ~~T~Ra~~lG~il~~~~a~~n~~f~lk~~~~~~~~i~~~ll~~~~g~~~a~~lP~~~~~~~~~~~~~~lNPgpf~~kE~~ 104 (727)
|+|+|++++|++++++++++|.|++||.|+++.+++++++++|.+.|.+. ++|++|||
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~----------------------~~t~~Enn 58 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR----------------------DRSILENN 58 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc----------------------cCChhHHH
Confidence 58999999999999999999999999999999999999999999999762 37999999
Q ss_pred HHhhhhhccccchhhhHHHHHHHHHhc----cCCCHHHHHHHHHHhhhHhHHHhhhcccccccCCCCcCCchHHHHHHHH
Q 042269 105 LLCVLATSGLSVPSSATILTVRKVFYH----KYLNFWVGLLLTLTSQMLGYGFAGIFMKFLVNNPYMWYPFTLVDVFLYR 180 (727)
Q Consensus 105 li~~~Asaa~~~~~a~~~i~~~~~~y~----~~~~~~~~i~~~ls~q~lG~~~Ag~lR~~lV~~~~l~~P~~lata~l~~ 180 (727)
++||+|+++++. + ++++++|+++. ++++++..++++++++++|+.|+.||||++|.+++|+|||++|++++++
T Consensus 59 ivQT~asA~~~~--a-g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~ 135 (591)
T TIGR00733 59 MVQTAASAAGTL--S-SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLK 135 (591)
T ss_pred HHHHHHHHHHHH--H-HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Confidence 999999999875 3 58899999764 4689999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCcCCcchHHHHHHHHHHHHHHHhcccchhhcccccc--hhhhhccCccceeeeCcccccccccccccchhh
Q 042269 181 SIHEVMKSRPQRGITKFQFFILAAVTSFAYAIVPGYFFPSLGALS--VVCWLWKDSVTAQLIGSGRNGFGIGSFALDWNA 258 (727)
Q Consensus 181 slh~~~~~~~~~~~s~~k~f~~~f~~~~~~~~lp~y~~p~L~~~~--~~~wi~p~~~~~~~i~g~~~GlGl~~~tfDws~ 258 (727)
+- ++++ +++|.|.++.+++++++|.++++ ++.++ ...|.. .|.+...+++|||+
T Consensus 136 ~g----~~g~--~~~~~~~l~~g~~~s~~~~~~~~-----~~~~~~~~~~~~~-------------~g~~~~~~~~~~Sp 191 (591)
T TIGR00733 136 AG----DKAR--NGTGAKPIAYGGILASIYAFLGS-----LRVWSGTLSAAKL-------------VGRRALYFGSDLSL 191 (591)
T ss_pred cc----cccc--chhhHHHHHHHHHHHHHHHHHHH-----hccCCchHHHHHh-------------cCCcceEEEecccH
Confidence 73 2221 24688999999999999998843 22222 111211 01112235689998
Q ss_pred hhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCceeeceeeeecCccccchhhhhh
Q 042269 259 IAAYSGNPLVYPLSTIINMTTGFIFFLYIITPIAYFTNSNNARHFPFSSTRLFDKYGHLYNVSKVVKDTDLTFNSKAYQG 338 (727)
Q Consensus 259 i~~~~g~pl~~p~~~~~~~~~G~vl~~~il~P~~~~~n~~~~~~~P~~s~~~fd~~g~~y~~s~il~~~~~~ln~~~y~~ 338 (727)
+++|.|+++|+++.+++++|++++|+++.|++..+++. ....+. .. .......
T Consensus 192 --alvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~-~~~~~~-----------------------~~-~~~~vw~ 244 (591)
T TIGR00733 192 --ALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGS-PGDLSA-----------------------LD-LAWTIWS 244 (591)
T ss_pred --HHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccH-----------------------HH-HHHHHHh
Confidence 69999999999999999999999999999999865432 111110 00 0112233
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCCcchhhhhhhhcCCCChhHHHHHHHHHHHH
Q 042269 339 YSNLYLSVVYLFALGFEFAAVTASLSHFIAFYGRDAWQQFKQAYVSSNNSTEDVHNRLMKKYKPVPQCWYLAILITAVGL 418 (727)
Q Consensus 339 ~~p~~~~~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~~~~D~h~~lm~~y~~vP~ww~~~~~v~~~v~ 418 (727)
+.+||++++.|+. .-++.+++..|.+++.+|+..+..++++++ .+..|+++|+|.|+...+.++.+ +
T Consensus 245 ~~vR~iGvg~m~~----------~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~dip~~~v~~~~~~~~-~ 311 (591)
T TIGR00733 245 TKVRYIGVGAIVV----------AALWTLLKLRGPIARGIKAGLEAARRRQAG--EAVLRTEEDLPINIVLTLVALFV-I 311 (591)
T ss_pred cccchhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccccccccHHHHHHHHHHHH-H
Confidence 4689999987655 234456677888888777655332221111 12356788999997544433322 2
Q ss_pred HhhhhhhccccCcch--------h-HHHHHHHHHHHHHHhhheeeEEe--eCCcc--hhhHHHHHhhhhhc---------
Q 042269 419 AILSCEAFGDQLQLP--------Y-WGILFSCLLILIFVLPLGVLQAT--TGQYI--SLNLISEMLVGYIY--------- 476 (727)
Q Consensus 419 ~~~~~~~~~~~~~lp--------~-~~~ila~~la~v~~~~~g~~~g~--T~~~~--~l~~~sqli~g~~~--------- 476 (727)
. ..++ .++.| + .+.+++++++++++...+++.|+ ||.|| ++++++|++++.+.
T Consensus 312 ~---~~~~--~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~ 386 (591)
T TIGR00733 312 P---LADF--LLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTG 386 (591)
T ss_pred H---HHHH--hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCc
Confidence 2 1111 23333 2 46788899999999999999999 77788 89999999999998
Q ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhccccCCCCCCC
Q 042269 477 ---PGKPIANMVFKAYSVTAEDFALAFISELKLAHYMKIAPKSMFVAQIIGTFVSSVVGFATSWWLLSAVEHICDPKNLP 553 (727)
Q Consensus 477 ---pg~~~anl~~~~~~~~~~~qa~~~~~DlK~Ghy~k~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~l~~ 553 (727)
|+...+|++.+++.+.+++||+|++||||+||++|++||+||++|++|+++|+++++++++++.++| ++..+.-.+
T Consensus 387 ~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ay-g~~~~~~~~ 465 (591)
T TIGR00733 387 SQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAY-GIAGTPTAK 465 (591)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccCC
Confidence 3456789999999999999999999999999999999999999999999999999999999999888 443211122
Q ss_pred CCCCccccchhhhhhhhhhhhhcccccccCCCCchhhHHHHH-HHHHHHHHHHHHHHHhcCCccccccccchHHHhHhhh
Q 042269 554 KGSPWTCPSKNNAYSTSVVWGVIGPQRMFYPHGLYSKLFYFF-LIGLICPLLVWVLSKFFPEKKWIKDINVSNLLGGKVA 632 (727)
Q Consensus 554 ~~~~~t~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~l~~~~-~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~~~g~~~ 632 (727)
+++.|.+|++.. +++++.|++++ . ++|.+ .+|+++.++..++++..++++ ++++.|.+.+|+++
T Consensus 466 ~~~~l~APqA~l--~~ava~gi~~~------~-----l~~~~i~~ga~~g~~l~~~~~~~~~~~--~~~~~p~lavgig~ 530 (591)
T TIGR00733 466 GENALPAPQAFL--MAAVTEGVFTG------T-----LEWTMVFIGAGIGIALIIIDEILAKRG--SKFRTPVMAVGVGI 530 (591)
T ss_pred CccccCCCHHHH--HHHHHhhhcCC------C-----ccHHHHHHHHHHHHHHHHHHHHhhhcc--cccCCchhHHHHHh
Confidence 456688886544 47777766542 1 35654 477777777777776665432 34556889999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhcCccc------ccccceeeehhhHhhhHHHHHHHHHH
Q 042269 633 VAVGGATSFLSFVTVGFVYNLVVYRKYKDW------WAKYNYVLSNGLDVGVAFLSLLTSLC 688 (727)
Q Consensus 633 ~~p~~~~~~~~~~~vg~~~~~~~rr~~~~w------~~kynyvlaagL~aG~~i~~vi~~~~ 688 (727)
|.|. +++..+++|.+..++|+|++++. -++|.+++||||++||+++++++++.
T Consensus 531 yLP~---~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~~ 589 (591)
T TIGR00733 531 YLPL---SLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAAI 589 (591)
T ss_pred hcch---hHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHHH
Confidence 9885 46899999999999998875421 14679999999999999999998653
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.2e-58 Score=505.47 Aligned_cols=571 Identities=16% Similarity=0.156 Sum_probs=425.0
Q ss_pred CCCCCCccchhhhhhhhHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhcCCcccccCCcccccccCCCCC
Q 042269 19 DDPTLPTLTFRTWAIGPITCMVLAFVKEFFSYRQNPIGLSTTCIQILLLGLGKLMASTLPSTLLKVPGTNWTFSMNPGPF 98 (727)
Q Consensus 19 ddp~~p~~T~Ra~~lG~il~~~~a~~n~~f~lk~~~~~~~~i~~~ll~~~~g~~~a~~lP~~~~~~~~~~~~~~lNPgpf 98 (727)
|..++||+|+|++++|+++++++.++|.|+|+|+|.++.++++++++||.+.|.+ .++
T Consensus 8 ~~~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~----------------------~~~ 65 (624)
T COG1297 8 PTAFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAF----------------------KGS 65 (624)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHh----------------------Ccc
Confidence 4447899999999999999999999999999999999999999999999999976 258
Q ss_pred CchhhHHHhhhhhccccchhhhHHHHHHHH----HhccCCCHHHHHHHHHHhhhHhHHHhhhcccccccCCCCcCCchHH
Q 042269 99 NIKEHVLLCVLATSGLSVPSSATILTVRKV----FYHKYLNFWVGLLLTLTSQMLGYGFAGIFMKFLVNNPYMWYPFTLV 174 (727)
Q Consensus 99 ~~kE~~li~~~Asaa~~~~~a~~~i~~~~~----~y~~~~~~~~~i~~~ls~q~lG~~~Ag~lR~~lV~~~~l~~P~~la 174 (727)
|+.|||++||+||++++. ++++|+++|. -|+++++++....++..++++|+.|+.||||.+|.+++++||||.|
T Consensus 66 silENNmVQT~ASAagtl--sa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvA 143 (624)
T COG1297 66 SILENNMVQTQASAAGTL--SAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVA 143 (624)
T ss_pred chhhhHHHHHHHhhhccc--cccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchh
Confidence 999999999999999865 6668888775 3679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCcCCcchHHHHHHHHHHHHHHHhcccchhhccccc--chhhhhccCccceeeeCccccccccccc
Q 042269 175 DVFLYRSIHEVMKSRPQRGITKFQFFILAAVTSFAYAIVPGYFFPSLGAL--SVVCWLWKDSVTAQLIGSGRNGFGIGSF 252 (727)
Q Consensus 175 ta~l~~slh~~~~~~~~~~~s~~k~f~~~f~~~~~~~~lp~y~~p~L~~~--~~~~wi~p~~~~~~~i~g~~~GlGl~~~ 252 (727)
+++++++..++ | ++ .+..|....++..+++|.++.+= ++-+ ++-+|+.- |-+..-+
T Consensus 144 aAEvL~~g~~~-~-gd---~~g~~~i~~g~~~~~~~~~l~~g----~~~~~~~~~~~~~~-------------~~~~~~l 201 (624)
T COG1297 144 AAEVLKAGNQR-E-GD---ASGIKLIALGGALAALYSLLASG----LRVIASSLSAAFSV-------------GRAAFAL 201 (624)
T ss_pred HHHHHHhcCCC-C-CC---cccchhhhhhhHHHHHHHHHhcc----ceeehhhHHHHHHh-------------cchhhhh
Confidence 99999997633 2 22 26777888899999999888652 2222 22233321 1111122
Q ss_pred ccchhhhhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccCceeeceeeeecCccccc
Q 042269 253 ALDWNAIAAYSGNPLVYPLSTIINMTTGFIFFLYIITPIAYFTNSNNARHFPFSSTRLFDKYGHLYNVSKVVKDTDLTFN 332 (727)
Q Consensus 253 tfDws~i~~~~g~pl~~p~~~~~~~~~G~vl~~~il~P~~~~~n~~~~~~~P~~s~~~fd~~g~~y~~s~il~~~~~~ln 332 (727)
..|.|+ +++|.|+++++.+.+-+++|.+++|++..|++-+...- | + |.++-
T Consensus 202 g~~~S~--AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~~~~~-----p--~--------------------~~~~~ 252 (624)
T COG1297 202 GLGLSL--ALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLIVPG-----P--S--------------------DQEAG 252 (624)
T ss_pred cccccH--HHhCceEEecchHHHHHHHHHHHHHHHHHHHHHhcccC-----C--C--------------------chhHH
Confidence 344455 68899999999999999999999999999998654421 1 1 11111
Q ss_pred hhh--hhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCCcchhhhhhhhcCCCChhHHHH
Q 042269 333 SKA--YQGYSNLYLSVVYLFALGFEFAAVTASLSHFIAFYGRDAWQQFKQAYVSSNNSTEDVHNRLMKKYKPVPQCWYLA 410 (727)
Q Consensus 333 ~~~--y~~~~p~~~~~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~~~~D~h~~lm~~y~~vP~ww~~~ 410 (727)
.++ +....-||++++- +...-+|+++...|.+.+..|+.+++.+.+++. .+..|+++|+|.-|-..
T Consensus 253 ~~a~~vW~s~VrfIGaG~----------i~i~~~wtl~~l~~pi~~gi~~~f~~~r~~~~~--~~~~rte~Dl~~~~~~~ 320 (624)
T COG1297 253 VQAWKVWSSKVRFIGAGA----------IAIAAIWTLISLLGPILRGIKATFESARGRRRA--GAVSRTERDLPPKLVLL 320 (624)
T ss_pred HHHHHHhhheeEEeehhH----------HHHHHHHHHHHHHhHHHHHHHHHHHHhhccccc--ccccchhhcCChhhHHH
Confidence 112 2222238999885 334466777777888777777665443321111 11226789999998777
Q ss_pred HHHHHHHHHhhhhhhccccC-------cchhHHHHHHHHHHHHHHhhheeeEEeeCCc--c--hhhHHHHHhhhhhc---
Q 042269 411 ILITAVGLAILSCEAFGDQL-------QLPYWGILFSCLLILIFVLPLGVLQATTGQY--I--SLNLISEMLVGYIY--- 476 (727)
Q Consensus 411 ~~v~~~v~~~~~~~~~~~~~-------~lp~~~~ila~~la~v~~~~~g~~~g~T~~~--~--~l~~~sqli~g~~~--- 476 (727)
.++...+...+...+.-+++ .+-.-..+++++++|+++-..|++.|+.|.+ | |++++++++.+.++
T Consensus 321 ~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~ 400 (624)
T COG1297 321 VLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILIL 400 (624)
T ss_pred HHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHh
Confidence 77766655555554442111 1224466777888888999999999988775 3 78887777764443
Q ss_pred ---------CC-c---hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhc
Q 042269 477 ---------PG-K---PIANMVFKAYSVTAEDFALAFISELKLAHYMKIAPKSMFVAQIIGTFVSSVVGFATSWWLLSAV 543 (727)
Q Consensus 477 ---------pg-~---~~anl~~~~~~~~~~~qa~~~~~DlK~Ghy~k~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~ 543 (727)
|. + ...+++..++.+.++.+++|++||||+||++|++||+|+++|++|+++++++...|++++.++|
T Consensus 401 G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aY 480 (624)
T COG1297 401 GQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAY 480 (624)
T ss_pred ccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHh
Confidence 22 1 2467778899999999999999999999999999999999999999999999999999998877
Q ss_pred cccCCCCCCCCCCCccccchhhhhhhhhhhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Q 042269 544 EHICDPKNLPKGSPWTCPSKNNAYSTSVVWGVIGPQRMFYPHGLYSKLFYFFLIGLICPLLVWVLSKFFPEKKWIKDINV 623 (727)
Q Consensus 544 ~~~~~~~l~~~~~~~t~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~l~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~ 623 (727)
++..+.. .++.. .|..|...++++..| +|++..+|.++..+.++|+.+....+.++++ + .+..+
T Consensus 481 -gf~ga~~-r~~~~--l~apqa~lma~ia~G------vf~~~lew~mi~~g~~~gi~lI~id~~l~~~-----~-~~~~l 544 (624)
T COG1297 481 -GFAGAPP-RQGMD--LAAPQATLMATIAKG------VFTGNLEWSMILAGAGIGIVLIGIDERLKGR-----G-GKLRL 544 (624)
T ss_pred -CcCCCCC-CCCCC--CcchHHHHHHHHhcc------cCCCCcchHHHHHHHhHhheeeeccHHHhcC-----C-ccccc
Confidence 4432210 01212 445577777877655 4666677887777777777777777766543 2 23447
Q ss_pred hHHHhHhhhccccchhhhhHHHHHHHHHHHHHHhcC-------cccccccceeeehhhHhhhHHHHHHHHHHHhcCCCC
Q 042269 624 SNLLGGKVAVAVGGATSFLSFVTVGFVYNLVVYRKY-------KDWWAKYNYVLSNGLDVGVAFLSLLTSLCLGMSDIY 695 (727)
Q Consensus 624 pv~~~g~~~~~p~~~~~~~~~~~vg~~~~~~~rr~~-------~~w~~kynyvlaagL~aG~~i~~vi~~~~~~~~g~~ 695 (727)
|++++|++.|.|. .++..+++|.+..|.+.|+. .+--++..+++||||+.||+++++++....-.+|.+
T Consensus 545 pvlAvGvGIylP~---s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~g~~ 620 (624)
T COG1297 545 PVLAVGVGIYLPP---SLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGSGKE 620 (624)
T ss_pred cceeeeeeeecCh---hhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheecCCC
Confidence 9999999999774 35688899988887776652 233455789999999999999999997766655553
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=91.06 E-value=7.2 Score=46.50 Aligned_cols=210 Identities=12% Similarity=0.079 Sum_probs=112.0
Q ss_pred CCCCccchhhhhhhhHHHHHHHHHHhhhcc---cccc--ccchhHHHHHHHHHHHHHHHhhcCCcccccCCcccccccCC
Q 042269 21 PTLPTLTFRTWAIGPITCMVLAFVKEFFSY---RQNP--IGLSTTCIQILLLGLGKLMASTLPSTLLKVPGTNWTFSMNP 95 (727)
Q Consensus 21 p~~p~~T~Ra~~lG~il~~~~a~~n~~f~l---k~~~--~~~~~i~~~ll~~~~g~~~a~~lP~~~~~~~~~~~~~~lNP 95 (727)
++.++...+.++.+++++.+.+..-..... +.++ +..+-+.+.+++.+.++..+.. +.||
T Consensus 349 ~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t---------------~~~P 413 (624)
T PF03169_consen 349 RTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGET---------------GINP 413 (624)
T ss_pred hhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhc---------------CCCc
Confidence 345667778888888877777766665555 3343 4445555566666666654421 1244
Q ss_pred CCCCchhhHHHhhhhhccc----------------cchhhhHHHHHHHHHhccCCCHHHHHHHHHHhhhHhHHHhhhccc
Q 042269 96 GPFNIKEHVLLCVLATSGL----------------SVPSSATILTVRKVFYHKYLNFWVGLLLTLTSQMLGYGFAGIFMK 159 (727)
Q Consensus 96 gpf~~kE~~li~~~Asaa~----------------~~~~a~~~i~~~~~~y~~~~~~~~~i~~~ls~q~lG~~~Ag~lR~ 159 (727)
. +.- +.+.|.+..... ...-+.++..-+|.-+-.+.++..+..--+.+.++|...+...-+
T Consensus 414 ~--~~~-~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~ 490 (624)
T PF03169_consen 414 V--SGL-NILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMR 490 (624)
T ss_pred c--hhh-hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 111 223333322211 011122233333332223456777777666677777776665444
Q ss_pred cc-----cc-----CCCCcCCchHHHHHHHHHhhhccCCCCcCCcchHHHHHHHHHHHHHHHhcccchhhcccccchhhh
Q 042269 160 FL-----VN-----NPYMWYPFTLVDVFLYRSIHEVMKSRPQRGITKFQFFILAAVTSFAYAIVPGYFFPSLGALSVVCW 229 (727)
Q Consensus 160 ~l-----V~-----~~~l~~P~~lata~l~~slh~~~~~~~~~~~s~~k~f~~~f~~~~~~~~lp~y~~p~L~~~~~~~w 229 (727)
.+ +. ..+++-|+....+++.+.+-++ .+ ...++.+.+++++.++-.++. ++. -.
T Consensus 491 l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~-~~-----~~~~~~~~~~~~~G~~~~i~~-~l~---------~~ 554 (624)
T PF03169_consen 491 LLNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGP-QR-----GLPYSALPWGFLIGAVLPILF-WLL---------QR 554 (624)
T ss_pred HHHHhhccCccccccCcCcchHHHHHHHHHHHhcCC-cc-----cchHHHHHHHHHHHHHHHHHH-HHH---------Hh
Confidence 33 22 3456667788888888887654 32 246667777777776644332 111 00
Q ss_pred hccCccceeeeCcccccccccccccchhhhhhhcCCcccccHHHHHHHHHHHHHHHH
Q 042269 230 LWKDSVTAQLIGSGRNGFGIGSFALDWNAIAAYSGNPLVYPLSTIINMTTGFIFFLY 286 (727)
Q Consensus 230 i~p~~~~~~~i~g~~~GlGl~~~tfDws~i~~~~g~pl~~p~~~~~~~~~G~vl~~~ 286 (727)
..|+. ..+|+. ..-|++.|......+++|.++.++
T Consensus 555 ~~P~~----~~~~~~------------------~~~~~~~~~~~~~~~~iG~~~~~~ 589 (624)
T PF03169_consen 555 KFPSP----LAFGGA------------------SSIGFYLPSNYTSAIFIGGLFQFY 589 (624)
T ss_pred hCChh----heeeec------------------ccccccchhHHHHHHHHHHHHHHH
Confidence 11221 111211 115677888888888888887653
No 8
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=81.60 E-value=31 Score=37.99 Aligned_cols=166 Identities=13% Similarity=0.177 Sum_probs=86.2
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhccCCCCcchhhhh-hhhcCCCChhHHHHHHHHHHHHHhhhhhhccccCcchhHHHHHH
Q 042269 362 SLSHFIAFYGRDAWQQFKQAYVSSNNSTEDVHNRL-MKKYKPVPQCWYLAILITAVGLAILSCEAFGDQLQLPYWGILFS 440 (727)
Q Consensus 362 ~i~~~~l~~~~~i~~~~~~~~~~~~~~~~D~h~~l-m~~y~~vP~ww~~~~~v~~~v~~~~~~~~~~~~~~lp~~~~ila 440 (727)
.++..++.+++++++.+++...+ +..+..++. .+-++.+-.+...- .+.+++.++.+...+. -.++| ++.+++
T Consensus 166 ~~~ff~L~d~~~~~~~~~~~~p~---~~~~~~~~~l~~~~~~~~~y~~gq-~i~al~~gi~~~igl~-ilgvp-~alllg 239 (355)
T COG0628 166 VLLFFLLLDGERLRRKLIKLLPR---KLRKRARRILSEVNATLSGYLRGQ-VLVALIVGILTGIGLL-ILGVP-YALLLG 239 (355)
T ss_pred HHHHHHHcCHHHHHHHHHHhCCH---HHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHccc-HHHHHH
Confidence 34445667888888888765421 111111111 12234444444333 3334444444322210 23444 234444
Q ss_pred HHHHHHHHhhheeeEEeeCCcchhhHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHcCCChHHHHH
Q 042269 441 CLLILIFVLPLGVLQATTGQYISLNLISEMLVGYIYPGKPIANMVFKAYSVTAEDFA-LAFISELKLAHYMKIAPKSMFV 519 (727)
Q Consensus 441 ~~la~v~~~~~g~~~g~T~~~~~l~~~sqli~g~~~pg~~~anl~~~~~~~~~~~qa-~~~~~DlK~Ghy~k~pPr~~f~ 519 (727)
++.++.-.+|.. .+.+..+--.+.++...| +. -...-.+++...+|. .++++..=+|+-+|++|=..+.
T Consensus 240 il~g~~~lIP~i--------G~~i~~ip~~i~al~~~~-~~-~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ili 309 (355)
T COG0628 240 LLAGLLSLIPYI--------GPVIGLIPAVIIALLQGG-PW-GALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILL 309 (355)
T ss_pred HHHHHHHhhccc--------ccHHHHHHHHHHHHHhcc-hH-HHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHH
Confidence 444444344420 123444445555555555 32 223334445555544 4557788899999999999999
Q ss_pred HHHHhH----HHhHHHHHHHHHHHHHhc
Q 042269 520 AQIIGT----FVSSVVGFATSWWLLSAV 543 (727)
Q Consensus 520 ~QiiGt----ivg~~v~~~v~~~~~~~~ 543 (727)
+.+.|. ++|.++.+.++-.+...+
T Consensus 310 sll~g~~l~G~~G~ila~pl~~~~k~~~ 337 (355)
T COG0628 310 SLLGGGSLFGFVGLILAPPLAAVLKVLL 337 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876 556666666654444333
No 9
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=68.02 E-value=1.8e+02 Score=31.32 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHhhhhHHHHcCCChHHHHHHHHHhHH----HhHHHHHHHHHH
Q 042269 497 ALAFISELKLAHYMKIAPKSMFVAQIIGTF----VSSVVGFATSWW 538 (727)
Q Consensus 497 a~~~~~DlK~Ghy~k~pPr~~f~~QiiGti----vg~~v~~~v~~~ 538 (727)
-.+.++-.=.|.-+++||=..+.+.+.|.. +|.++.+.++-.
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~~~ 331 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIVVL 331 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788999999999999999998874 455566555533
No 10
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=56.95 E-value=1.7e+02 Score=31.46 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHH-HHHhhhhHHHHcCCChHHHHHHHHHhH----HHhHHHHHHHHHHHH
Q 042269 484 MVFKAYSVTAEDFAL-AFISELKLAHYMKIAPKSMFVAQIIGT----FVSSVVGFATSWWLL 540 (727)
Q Consensus 484 l~~~~~~~~~~~qa~-~~~~DlK~Ghy~k~pPr~~f~~QiiGt----ivg~~v~~~v~~~~~ 540 (727)
.....+.....+|-. +.++-.=.|+-+|+||-..+.+.++|. ++|.++.+.++-...
T Consensus 259 ~~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~~g~~~fG~~G~il~~pi~~~~~ 320 (327)
T PF01594_consen 259 ALIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVIIGGYLFGFIGLILAPPILAVIK 320 (327)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444555555544 455666689999999999999999987 446666666654443
No 11
>PRK10983 putative inner membrane protein; Provisional
Probab=53.87 E-value=3.5e+02 Score=30.08 Aligned_cols=47 Identities=9% Similarity=-0.046 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhhHHHHcCCChHHHHHHHHHhHH----HhHHHHHHHHHHHH
Q 042269 494 EDFALAFISELKLAHYMKIAPKSMFVAQIIGTF----VSSVVGFATSWWLL 540 (727)
Q Consensus 494 ~~qa~~~~~DlK~Ghy~k~pPr~~f~~QiiGti----vg~~v~~~v~~~~~ 540 (727)
..+..+.++-.=.|.-+++||=..+.+.+.|.. +|.++.+.++-.+.
T Consensus 288 v~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i~a~~~ 338 (368)
T PRK10983 288 VGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVLAVSY 338 (368)
T ss_pred HHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777899999999999999988875 45555555554433
No 12
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=45.36 E-value=6e+02 Score=30.30 Aligned_cols=228 Identities=13% Similarity=0.075 Sum_probs=118.0
Q ss_pred chhHHHHHHHHHHHHHHhhheeeEEeeCCcchhhHHHHHh----hhhhcCCchhHHHHHHHHHHHHHHHHHHHHhhh---
Q 042269 432 LPYWGILFSCLLILIFVLPLGVLQATTGQYISLNLISEML----VGYIYPGKPIANMVFKAYSVTAEDFALAFISEL--- 504 (727)
Q Consensus 432 lp~~~~ila~~la~v~~~~~g~~~g~T~~~~~l~~~sqli----~g~~~pg~~~anl~~~~~~~~~~~qa~~~~~Dl--- 504 (727)
+.+-++++.++++.+++..+.|+-=.+|..++.++.+-++ .-.+.+.++.-|.+..+.+..+.+.++ +..-+
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4456677777777777777777766777776555444333 223334566666665555544444332 22211
Q ss_pred -hHHHHcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhccccCCCCCCCCCCCccccchhhhhhhhhhhhhcccccccC
Q 042269 505 -KLAHYMKIAPKSMFVAQIIGTFVSSVVGFATSWWLLSAVEHICDPKNLPKGSPWTCPSKNNAYSTSVVWGVIGPQRMFY 583 (727)
Q Consensus 505 -K~Ghy~k~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~~t~p~~~~~~~~sv~wg~~gp~~~f~ 583 (727)
.+|+.-..|...+...=+.|.++|.+.....-|.+... + +.+=|...+ .+-++- .| ++ +
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~------~-------~L~fP~G~A--~Ae~l~--~g-~~--g 140 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVE------S-------KLPYPEGVA--CAEVLK--AG-DK--A 140 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------C-------CCCCCCHHH--HHHHHH--cc-cc--c
Confidence 12332234667777777888999998888876655321 1 123333322 122221 12 11 1
Q ss_pred -CCCchhhHHHHHHHHHHHHHHHHHHHHhcCC----------ccccccccchHHHhHhhhccccchhhhhHHHHHHHHHH
Q 042269 584 -PHGLYSKLFYFFLIGLICPLLVWVLSKFFPE----------KKWIKDINVSNLLGGKVAVAVGGATSFLSFVTVGFVYN 652 (727)
Q Consensus 584 -~g~~y~~l~~~~~iG~~~~i~~~ll~r~~p~----------~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vg~~~~ 652 (727)
.+..-..+..+++++.+..+.. . -|.+|. +.+.=.++......|.+++.+- +....+++|.++.
T Consensus 141 ~~~~~~~~l~~g~~~s~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~---~v~~s~~~G~vla 215 (591)
T TIGR00733 141 RNGTGAKPIAYGGILASIYAFLG-S-LRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGL---NIGFAMFLGGAIA 215 (591)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH-H-hccCCchHHHHHhcCCcceEEEecccHHHHcCceeeCh---HHHHHHHHHHHHH
Confidence 0112244555556665544431 1 122331 0011123555566888888653 3456677776665
Q ss_pred HH-----HHhc-C-cc----------cccccceeeehhhHhhhHHHHHHH
Q 042269 653 LV-----VYRK-Y-KD----------WWAKYNYVLSNGLDVGVAFLSLLT 685 (727)
Q Consensus 653 ~~-----~rr~-~-~~----------w~~kynyvlaagL~aG~~i~~vi~ 685 (727)
|. ++++ . +. -|.+|---++.|.+.+.++..++.
T Consensus 216 Wgvl~P~l~~~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~ 265 (591)
T TIGR00733 216 WGVAIPIYTAKMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLK 265 (591)
T ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 42 2221 1 10 122221116999999999999875
No 13
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=44.58 E-value=4.6e+02 Score=28.71 Aligned_cols=49 Identities=6% Similarity=0.032 Sum_probs=36.8
Q ss_pred HHHHHHHHH-HHHHhhhhHHHHcCCChHHHHHHHHHhH----HHhHHHHHHHHH
Q 042269 489 YSVTAEDFA-LAFISELKLAHYMKIAPKSMFVAQIIGT----FVSSVVGFATSW 537 (727)
Q Consensus 489 ~~~~~~~qa-~~~~~DlK~Ghy~k~pPr~~f~~QiiGt----ivg~~v~~~v~~ 537 (727)
+.+...+|. .++++-.=+|+-+++||=..+.+.++|. ++|.+++++++-
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~~ 319 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTI 319 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445555555 5678888899999999999999999987 455556666553
No 14
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=41.13 E-value=1.2e+02 Score=34.78 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=14.1
Q ss_pred CChhHHHHHHHHHHHHHhh
Q 042269 403 VPQCWYLAILITAVGLAIL 421 (727)
Q Consensus 403 vP~ww~~~~~v~~~v~~~~ 421 (727)
-++++|+...++.+++.+.
T Consensus 251 ~~~~~~~~~~~l~~~~li~ 269 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIY 269 (465)
T ss_pred cccceeehHHHHHHHHHHh
Confidence 4677888888888776554
No 15
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=32.49 E-value=45 Score=23.28 Aligned_cols=18 Identities=11% Similarity=0.584 Sum_probs=15.9
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 042269 30 TWAIGPITCMVLAFVKEF 47 (727)
Q Consensus 30 a~~lG~il~~~~a~~n~~ 47 (727)
+|++|+.+++.++.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999998864
No 16
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=32.34 E-value=6.3e+02 Score=26.72 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=22.3
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHhc
Q 042269 516 SMFVAQIIGTFVSSVVGFATSWWLLSAV 543 (727)
Q Consensus 516 ~~f~~QiiGtivg~~v~~~v~~~~~~~~ 543 (727)
.....=++|.+++.++.+...+++++-.
T Consensus 213 ~~~~~~~ig~~~afv~g~l~i~~ll~~~ 240 (259)
T PF02673_consen 213 GSWPPLLIGFVVAFVVGYLAIKWLLRFL 240 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678889999999999999888654
No 17
>PRK14749 hypothetical protein; Provisional
Probab=30.01 E-value=53 Score=22.76 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.9
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 042269 30 TWAIGPITCMVLAFVKEF 47 (727)
Q Consensus 30 a~~lG~il~~~~a~~n~~ 47 (727)
+|++|+.+++.++.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999998864
No 18
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=29.38 E-value=55 Score=22.49 Aligned_cols=18 Identities=11% Similarity=0.565 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 042269 30 TWAIGPITCMVLAFVKEF 47 (727)
Q Consensus 30 a~~lG~il~~~~a~~n~~ 47 (727)
+|++|+.+++.++.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999988864
No 19
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=24.29 E-value=1.2e+02 Score=26.91 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 042269 348 YLFALGFEFAAVTASLSHFIAFYGRDAWQQ 377 (727)
Q Consensus 348 ~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~ 377 (727)
|.++--+.||++..++.-++|--.+.||..
T Consensus 11 yal~K~~~FA~L~i~~FiILLIi~~~IW~~ 40 (121)
T PF10669_consen 11 YALTKIMFFAFLFIVVFIILLIITKSIWHD 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445666666555555555566666653
No 20
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=23.43 E-value=80 Score=22.63 Aligned_cols=18 Identities=11% Similarity=0.587 Sum_probs=15.4
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 042269 30 TWAIGPITCMVLAFVKEF 47 (727)
Q Consensus 30 a~~lG~il~~~~a~~n~~ 47 (727)
+|++|+++++-++.+|..
T Consensus 5 aWiLG~lLAcAFgiinAl 22 (37)
T COG4890 5 AWILGLLLACAFGIINAL 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999999998888864
No 21
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=21.42 E-value=3.4e+02 Score=26.32 Aligned_cols=27 Identities=11% Similarity=0.395 Sum_probs=22.7
Q ss_pred HHHHHHHHHhH-HHhHHHHHHHHHHHHH
Q 042269 515 KSMFVAQIIGT-FVSSVVGFATSWWLLS 541 (727)
Q Consensus 515 r~~f~~QiiGt-ivg~~v~~~v~~~~~~ 541 (727)
..-..+|++|| ++|+++++.++.+++.
T Consensus 90 ~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 90 WAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 45678999998 8899999999988763
No 22
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=20.76 E-value=6.6e+02 Score=26.33 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=50.5
Q ss_pred CCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhccccCCCCCCCCCCCccccchhhhhhhhhhhhhcccccccCCCCchhh
Q 042269 511 KIAPKSMFVAQIIGTFVSSVVGFATSWWLLSAVEHICDPKNLPKGSPWTCPSKNNAYSTSVVWGVIGPQRMFYPHGLYSK 590 (727)
Q Consensus 511 k~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~~t~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~ 590 (727)
+++-|..|.++++=..+|++...++- +.++..++.+.+ |+ .+ ..+.+.+. . .+| |++.+ ..-+.
T Consensus 121 ~l~~~~l~~a~ilig~LGAvmDvais--IaSsl~El~~~~---p~--is--~~eL~~SG-~---~IG-rDimG--tm~NT 184 (244)
T PF07907_consen 121 GLDFRGLFFAGILIGSLGAVMDVAIS--IASSLFELKRHN---PD--IS--RKELFKSG-M---NIG-RDIMG--TMINT 184 (244)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhC---CC--CC--HHHHHHHH-H---HHH-HHHHH--HHHHH
Confidence 47778899999988888888877765 234454443322 11 11 11222111 1 233 33332 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccchHH
Q 042269 591 LFYFFLIGLICPLLVWVLSKFFPEKKWIKDINVSNL 626 (727)
Q Consensus 591 l~~~~~iG~~~~i~~~ll~r~~p~~~~~~~i~~pv~ 626 (727)
+..+ .+|--+|...++.+..+| +.+-+|...+
T Consensus 185 Lifa-y~g~sl~l~ll~~~~~~~---~~~~ln~~~~ 216 (244)
T PF07907_consen 185 LIFA-YIGSSLPLLLLYLANGYS---FGQILNSKIF 216 (244)
T ss_pred HHHH-HHHHHHHHHHHHHHcCCC---HHHHHchHHH
Confidence 3333 467777777776654444 4455666543
Done!