Query 042269
Match_columns 727
No_of_seqs 171 out of 1143
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:31:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 17.0 8.8E+02 0.03 25.3 12.5 19 512-530 171-189 (340)
2 3llq_A Aquaporin Z 2; aquapori 15.7 8.2E+02 0.028 24.3 11.5 20 512-531 155-174 (256)
3 4g1u_A Hemin transport system 9.9 1.4E+03 0.048 23.7 18.5 82 501-611 242-323 (357)
4 2l8s_A Integrin alpha-1; trans 9.6 4.7E+02 0.016 19.8 4.8 37 264-300 2-38 (54)
5 3h3g_B Parathyroid hormone-rel 9.4 2.4E+02 0.0083 17.8 2.5 17 501-526 4-20 (24)
6 1v54_K IHQ, cytochrome C oxida 8.7 1.6E+02 0.0053 22.4 1.7 36 656-694 3-38 (56)
7 2k1a_A Integrin alpha-IIB; sin 8.4 3.3E+02 0.011 19.6 3.3 17 400-416 5-21 (42)
8 2ks1_B Epidermal growth factor 7.8 3E+02 0.01 20.0 2.9 16 646-661 26-41 (44)
9 2l2t_A Receptor tyrosine-prote 7.7 3E+02 0.01 20.0 2.9 17 645-661 24-40 (44)
10 2y69_K Cytochrome C oxidase po 7.6 1.8E+02 0.006 23.7 1.7 36 656-694 27-62 (80)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=17.01 E-value=8.8e+02 Score=25.26 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=13.2
Q ss_pred CChHHHHHHHHHhHHHhHH
Q 042269 512 IAPKSMFVAQIIGTFVSSV 530 (727)
Q Consensus 512 ~pPr~~f~~QiiGtivg~~ 530 (727)
.++-..|..|+++|++=.+
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~ 189 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVF 189 (340)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 3556778888888876443
No 2
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=15.69 E-value=8.2e+02 Score=24.30 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHhHHHhHHH
Q 042269 512 IAPKSMFVAQIIGTFVSSVV 531 (727)
Q Consensus 512 ~pPr~~f~~QiiGtivg~~v 531 (727)
.++...|..|+++|++=.++
T Consensus 155 ~s~~~~f~~E~i~Tf~Lv~~ 174 (256)
T 3llq_A 155 YSLVSALLIEIILTAFFLIV 174 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 35667899999999874443
No 3
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=9.86 E-value=1.4e+03 Score=23.73 Aligned_cols=82 Identities=13% Similarity=-0.085 Sum_probs=45.2
Q ss_pred HhhhhHHHHcCCChHHHHHHHHHhHHHhHHHHHHHHHHHHHhccccCCCCCCCCCCCccccchhhhhhhhhhhhhccccc
Q 042269 501 ISELKLAHYMKIAPKSMFVAQIIGTFVSSVVGFATSWWLLSAVEHICDPKNLPKGSPWTCPSKNNAYSTSVVWGVIGPQR 580 (727)
Q Consensus 501 ~~DlK~Ghy~k~pPr~~f~~QiiGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~~t~p~~~~~~~~sv~wg~~gp~~ 580 (727)
.-|=...+-+|+++|..-..-++-+.+-+.+++.+ ...+.- -.+-.|.. . ++
T Consensus 242 ~lGe~~A~sLGv~v~~~r~~~l~l~all~a~ava~-------vG~I~F-------VGLivPhi-------------a-R~ 293 (357)
T 4g1u_A 242 QLGDEEAHYLGVNVRQAKLRLLLLSAILIGAAVAV-------SGVIGF-------IGLVVPHL-------------I-RM 293 (357)
T ss_dssp GGCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-------HCCCCS-------TTTHHHHH-------------H-HT
T ss_pred cCCHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHHH-------------H-HH
Confidence 44557889999999987666555443333222221 111110 01223321 1 44
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q 042269 581 MFYPHGLYSKLFYFFLIGLICPLLVWVLSKF 611 (727)
Q Consensus 581 ~f~~g~~y~~l~~~~~iG~~~~i~~~ll~r~ 611 (727)
+++++ .-..++.+.++|+++-+..-.+.|.
T Consensus 294 l~g~~-~~~llp~Sal~Ga~lll~aD~lar~ 323 (357)
T 4g1u_A 294 RIGAD-HRWLLPGAALGGACLLLTADTLART 323 (357)
T ss_dssp TSCSC-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55542 2346788999999887776666654
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.57 E-value=4.7e+02 Score=19.82 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=23.7
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 042269 264 GNPLVYPLSTIINMTTGFIFFLYIITPIAYFTNSNNA 300 (727)
Q Consensus 264 g~pl~~p~~~~~~~~~G~vl~~~il~P~~~~~n~~~~ 300 (727)
|.|--+|+|..+-..+|.++-..++.-++|.-|.+.-
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLLMLLILALWKIGFFKR 38 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 5666788888766555555555555556776776643
No 5
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=9.35 E-value=2.4e+02 Score=17.78 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=13.2
Q ss_pred HhhhhHHHHcCCChHHHHHHHHHhHH
Q 042269 501 ISELKLAHYMKIAPKSMFVAQIIGTF 526 (727)
Q Consensus 501 ~~DlK~Ghy~k~pPr~~f~~QiiGti 526 (727)
+||+| |.+|.-++++-+
T Consensus 4 ~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 4 IQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp HHHHH---------HHHHHHHHHHHH
T ss_pred HHHHH---------HHHHHHHHHHHh
Confidence 68998 888888877643
No 6
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=8.69 E-value=1.6e+02 Score=22.39 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=24.2
Q ss_pred HhcCcccccccceeeehhhHhhhHHHHHHHHHHHhcCCC
Q 042269 656 YRKYKDWWAKYNYVLSNGLDVGVAFLSLLTSLCLGMSDI 694 (727)
Q Consensus 656 rr~~~~w~~kynyvlaagL~aG~~i~~vi~~~~~~~~g~ 694 (727)
+|+.+...+||+-. =|.+|..++..+-.+.++-.|+
T Consensus 3 ~k~~p~FHdKYGn~---~L~~Ga~FC~a~W~y~~TQ~GI 38 (56)
T 1v54_K 3 QKRAPDFHDKYGNA---VLASGATFCVAVWVYMATQIGI 38 (56)
T ss_dssp ---CCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHSCC
T ss_pred cccCcchhhhcCce---eeecchhhhHhhHhhhheeece
Confidence 45667778999643 2566777888877777777777
No 7
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=8.40 E-value=3.3e+02 Score=19.57 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=10.0
Q ss_pred cCCCChhHHHHHHHHHH
Q 042269 400 YKPVPQCWYLAILITAV 416 (727)
Q Consensus 400 y~~vP~ww~~~~~v~~~ 416 (727)
+.++|.|.+....+..+
T Consensus 5 ~~~vp~wiIi~s~l~GL 21 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGL 21 (42)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHH
Confidence 34678777655544443
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.76 E-value=3e+02 Score=19.97 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhcCcc
Q 042269 646 TVGFVYNLVVYRKYKD 661 (727)
Q Consensus 646 ~vg~~~~~~~rr~~~~ 661 (727)
+++....+|+|||+.+
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 4455566778887643
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.75 E-value=3e+02 Score=20.00 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhcCcc
Q 042269 645 VTVGFVYNLVVYRKYKD 661 (727)
Q Consensus 645 ~~vg~~~~~~~rr~~~~ 661 (727)
.+++....+|+|||+.+
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 34455566778887654
No 10
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.60 E-value=1.8e+02 Score=23.75 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=25.0
Q ss_pred HhcCcccccccceeeehhhHhhhHHHHHHHHHHHhcCCC
Q 042269 656 YRKYKDWWAKYNYVLSNGLDVGVAFLSLLTSLCLGMSDI 694 (727)
Q Consensus 656 rr~~~~w~~kynyvlaagL~aG~~i~~vi~~~~~~~~g~ 694 (727)
+|+.+...+||+-.+ |++|.+++..+-.+.++-.|+
T Consensus 27 ~k~~pdFHdKYGn~~---L~~Ga~FC~a~W~y~~TQ~GI 62 (80)
T 2y69_K 27 QKRAPDFHDKYGNAV---LASGATFCVAVWVYMATQIGI 62 (80)
T ss_dssp ---CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCchhhhcCcee---eecchhHHHhhHHHhheecce
Confidence 345667889997432 567888888888788887777
Done!