Query 042269
Match_columns 727
No_of_seqs 171 out of 1143
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 07:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042269.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042269hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 4.8 2.4E+02 0.018 17.1 2.4 14 672-685 2-15 (34)
2 d1zava1 d.58.62.1 (A:1-177) Ri 3.8 3.7E+02 0.027 22.7 4.1 27 506-532 128-154 (177)
3 d1v54l_ f.23.6.1 (L:) Mitochon 3.4 2.8E+02 0.02 18.5 2.0 12 146-157 25-36 (46)
4 d1ppjw_ f.23.14.1 (W:) Subunit 3.2 2.6E+02 0.019 20.0 1.9 20 631-650 10-29 (62)
5 d1q90l_ f.23.24.1 (L:) PetL su 3.1 3.1E+02 0.022 16.4 1.8 18 33-50 8-25 (32)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 2.9 6.1E+02 0.044 15.6 3.8 25 522-546 6-30 (34)
7 d1j4na_ f.19.1.1 (A:) Aquapori 2.9 7.5E+02 0.055 21.6 5.6 18 519-536 101-118 (249)
8 d1ymga1 f.19.1.1 (A:6-239) Aqu 2.6 3.3E+02 0.024 24.2 2.3 18 519-536 86-103 (234)
9 d1gvda_ a.4.1.3 (A:) c-Myb, DN 2.3 3.2E+02 0.023 18.3 1.4 14 94-107 2-15 (52)
10 d2vv5a3 f.34.1.1 (A:27-112) Me 2.2 4.8E+02 0.035 18.8 2.5 19 672-690 68-86 (86)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.82 E-value=2.4e+02 Score=17.15 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=10.5
Q ss_pred hhhHhhhHHHHHHH
Q 042269 672 NGLDVGVAFLSLLT 685 (727)
Q Consensus 672 agL~aG~~i~~vi~ 685 (727)
|++++|+++..+-+
T Consensus 2 a~fiagta~tmig~ 15 (34)
T d1q90m_ 2 AEFIAGTALTMVGM 15 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHH
Confidence 67899998876544
No 2
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=3.78 E-value=3.7e+02 Score=22.69 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=22.3
Q ss_pred HHHHcCCChHHHHHHHHHhHHHhHHHH
Q 042269 506 LAHYMKIAPKSMFVAQIIGTFVSSVVG 532 (727)
Q Consensus 506 ~Ghy~k~pPr~~f~~QiiGtivg~~v~ 532 (727)
+-.+.++|.|...++|++|.+-+..-.
T Consensus 128 i~~la~LPs~eel~a~l~~~L~ap~~~ 154 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGRVKAPITG 154 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhHHHH
Confidence 457889999999999999998865543
No 3
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.36 E-value=2.8e+02 Score=18.49 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=8.1
Q ss_pred hhhHhHHHhhhc
Q 042269 146 SQMLGYGFAGIF 157 (727)
Q Consensus 146 ~q~lG~~~Ag~l 157 (727)
+-++|.+||.|+
T Consensus 25 ~~~fGsgfa~PF 36 (46)
T d1v54l_ 25 TLFFGSGFAAPF 36 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhccccchH
Confidence 456777777763
No 4
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.20 E-value=2.6e+02 Score=19.99 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=9.3
Q ss_pred hhccccchhhhhHHHHHHHH
Q 042269 631 VAVAVGGATSFLSFVTVGFV 650 (727)
Q Consensus 631 ~~~~p~~~~~~~~~~~vg~~ 650 (727)
+...---++.+...+++|.+
T Consensus 10 Yn~lfrRnStf~~tI~~gAf 29 (62)
T d1ppjw_ 10 YSLLFRRTSTFALTIVVGAL 29 (62)
T ss_dssp HHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 33333333444555666643
No 5
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.13 E-value=3.1e+02 Score=16.37 Aligned_cols=18 Identities=6% Similarity=0.215 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHhhhcc
Q 042269 33 IGPITCMVLAFVKEFFSY 50 (727)
Q Consensus 33 lG~il~~~~a~~n~~f~l 50 (727)
+|+++++++-....|+|+
T Consensus 8 vglligal~~tlgiylgl 25 (32)
T d1q90l_ 8 VGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578888887777777765
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.91 E-value=6.1e+02 Score=15.56 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=16.3
Q ss_pred HHhHHHhHHHHHHHHHHHHHhcccc
Q 042269 522 IIGTFVSSVVGFATSWWLLSAVEHI 546 (727)
Q Consensus 522 iiGtivg~~v~~~v~~~~~~~~~~~ 546 (727)
++||+.|..|...+=.++..+|.+.
T Consensus 6 lv~tv~G~~vi~~vG~FfYGsYsGl 30 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFFYGAYAGL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred EeeehhhhhhHhheeeeeeeeeccc
Confidence 5677777766655555566777654
No 7
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.91 E-value=7.5e+02 Score=21.58 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.0
Q ss_pred HHHHHhHHHhHHHHHHHH
Q 042269 519 VAQIIGTFVSSVVGFATS 536 (727)
Q Consensus 519 ~~QiiGtivg~~v~~~v~ 536 (727)
.+|++|.++|+.+...++
T Consensus 101 ~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 101 IAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred eHHHHHHHHHHhhheeec
Confidence 689999999887766554
No 8
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.55 E-value=3.3e+02 Score=24.16 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=14.7
Q ss_pred HHHHHhHHHhHHHHHHHH
Q 042269 519 VAQIIGTFVSSVVGFATS 536 (727)
Q Consensus 519 ~~QiiGtivg~~v~~~v~ 536 (727)
.+|++|.++|+.+...++
T Consensus 86 ~aQ~lGa~~ga~l~~~~~ 103 (234)
T d1ymga1 86 VAQLLGAVAGAAVLYSVT 103 (234)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHHHHHHHHc
Confidence 799999999998766554
No 9
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.26 E-value=3.2e+02 Score=18.27 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=9.2
Q ss_pred CCCCCCchhhHHHh
Q 042269 94 NPGPFNIKEHVLLC 107 (727)
Q Consensus 94 NPgpf~~kE~~li~ 107 (727)
+-||||..|-..+.
T Consensus 2 ~rg~WT~eED~~L~ 15 (52)
T d1gvda_ 2 IKGPWTKEEDQRLI 15 (52)
T ss_dssp CCCSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 34778888876443
No 10
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=2.19 E-value=4.8e+02 Score=18.83 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred hhhHhhhHHHHHHHHHHHh
Q 042269 672 NGLDVGVAFLSLLTSLCLG 690 (727)
Q Consensus 672 agL~aG~~i~~vi~~~~~~ 690 (727)
+++.++.++.|+.+.|++|
T Consensus 68 t~l~a~~G~~gvaiGfa~Q 86 (86)
T d2vv5a3 68 ASVIAVLGAAGLVVGLALQ 86 (86)
T ss_dssp TTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcC
Done!