BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042270
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 151/281 (53%), Gaps = 11/281 (3%)
Query: 2 WILSAPKENLHLPAPNVFVPTDLSLKDTQEAK--FPVLLRKSSYSTLWYKPDTMFSTPKA 59
W +A LP N F+PT+ + + A +P L++ ++ S LW+K D F PKA
Sbjct: 484 WQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKA 543
Query: 60 FVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVV 119
+N F P A P + ++ LL D LNEYAY A++AGL Y + +T G ++V
Sbjct: 544 NLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVK 603
Query: 120 GYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD 179
GYN K ILL+ I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ +
Sbjct: 604 GYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTE 663
Query: 180 QTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239
W E E L + L F+P +LSR +E + GNI A I+Q +ED +
Sbjct: 664 VAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEH 723
Query: 240 SNPICQPLFPSQHLTNRVVKL-EKG------KNYVYSNQGL 273
++ +PL PSQ R V+L ++G +N V++N G+
Sbjct: 724 AH--TKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGI 762
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 149/270 (55%), Gaps = 11/270 (4%)
Query: 13 LPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA 70
LP N F+PT+ + + + +P L++ ++ S LW+K D F PKA +N F P A
Sbjct: 495 LPTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFA 554
Query: 71 SSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130
P + ++ LL D LNEYAY A++AGL Y + +T G ++V GYN K ILL+
Sbjct: 555 YVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLK 614
Query: 131 TIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190
I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ + W E E
Sbjct: 615 KIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEA 674
Query: 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPS 250
L + L F+P +LSR +E + GNI A I+Q +ED + ++ +PL PS
Sbjct: 675 LDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAH--TKPLLPS 732
Query: 251 QHLTNRVVKL-EKG------KNYVYSNQGL 273
Q + R V+L ++G +N V++N G+
Sbjct: 733 QLVRYREVQLPDRGWFVYQQRNEVHNNSGI 762
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 149/270 (55%), Gaps = 11/270 (4%)
Query: 13 LPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA 70
LP N F+PT+ + + + +P L++ ++ S LW+K D F PKA +N F P A
Sbjct: 495 LPTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFA 554
Query: 71 SSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130
P + ++ LL D LNEYAY A++AGL Y + +T G ++V GYN K ILL+
Sbjct: 555 YVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLK 614
Query: 131 TIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190
I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ + W E E
Sbjct: 615 KIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEA 674
Query: 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPS 250
L + L F+P +LSR +E + GNI A I+Q +ED + ++ +PL PS
Sbjct: 675 LDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAH--TKPLLPS 732
Query: 251 QHLTNRVVKL-EKG------KNYVYSNQGL 273
Q + R V+L ++G +N V++N G+
Sbjct: 733 QLVRYREVQLPDRGWFVYQQRNEVHNNSGI 762
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 149/270 (55%), Gaps = 11/270 (4%)
Query: 13 LPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA 70
LP N F+PT+ + + + +P L++ ++ S LW+K D F PKA +N F P A
Sbjct: 482 LPTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFA 541
Query: 71 SSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130
P + ++ LL D LNEYAY A++AGL Y + +T G ++V GYN K ILL+
Sbjct: 542 YVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLK 601
Query: 131 TIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190
I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ + W E E
Sbjct: 602 KIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEA 661
Query: 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPS 250
L + L F+P +LSR +E + GNI A I+Q +ED + ++ +PL PS
Sbjct: 662 LDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAH--TKPLLPS 719
Query: 251 QHLTNRVVKL-EKG------KNYVYSNQGL 273
Q + R V+L ++G +N V++N G+
Sbjct: 720 QLVRYREVQLPDRGWFVYQQRNEVHNNSGI 749
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 149/270 (55%), Gaps = 11/270 (4%)
Query: 13 LPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA 70
LP N F+PT+ + + + +P L++ ++ S LW+K D F PKA +N F P A
Sbjct: 495 LPTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFA 554
Query: 71 SSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130
P + ++ LL D LNEYAY A++AGL Y + +T G ++V GYN K ILL+
Sbjct: 555 YVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLK 614
Query: 131 TIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190
I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ + W E E
Sbjct: 615 KIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEA 674
Query: 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPS 250
L + L F+P +LSR +E + GNI A I+Q +ED + ++ +PL PS
Sbjct: 675 LDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAH--TKPLLPS 732
Query: 251 QHLTNRVVKL-EKG------KNYVYSNQGL 273
Q + R V+L ++G +N V++N G+
Sbjct: 733 QLVRYREVQLPDRGWFVYQQRNEVHNNSGI 762
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 149/270 (55%), Gaps = 11/270 (4%)
Query: 13 LPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA 70
LP N F+PT+ + + + +P L++ ++ S LW+K D F PKA +N F P A
Sbjct: 524 LPTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFA 583
Query: 71 SSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130
P + ++ LL D LNEYAY A++AGL Y + +T G ++V GYN K ILL+
Sbjct: 584 YVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLK 643
Query: 131 TIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190
I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ + W E E
Sbjct: 644 KIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEA 703
Query: 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPS 250
L + L F+P +LSR +E + GNI A I+Q +ED + ++ +PL PS
Sbjct: 704 LDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAH--TKPLLPS 761
Query: 251 QHLTNRVVKL-EKG------KNYVYSNQGL 273
Q + R V+L ++G +N V++N G+
Sbjct: 762 QLVRYREVQLPDRGWFVYQQRNEVHNNSGI 791
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 149/270 (55%), Gaps = 11/270 (4%)
Query: 13 LPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA 70
LP N F+PT+ + + + +P L++ ++ S LW+K D F PKA +N F P A
Sbjct: 495 LPTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFA 554
Query: 71 SSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130
P + ++ LL D LNEYAY A++AGL Y + +T G ++V GYN K ILL+
Sbjct: 555 YVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLK 614
Query: 131 TIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190
I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ + W E E
Sbjct: 615 KIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEA 674
Query: 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPS 250
L + L F+P +LSR +E + GNI A I+Q +ED + ++ +PL PS
Sbjct: 675 LDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAH--TKPLLPS 732
Query: 251 QHLTNRVVKL-EKG------KNYVYSNQGL 273
Q + R V+L ++G +N V++N G+
Sbjct: 733 QLVRYREVQLPDRGWFVYQQRNEVHNNCGI 762
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 149/270 (55%), Gaps = 11/270 (4%)
Query: 13 LPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA 70
LP N F+PT+ + + + +P L++ ++ S LW+K D F PKA +N F P A
Sbjct: 495 LPTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFA 554
Query: 71 SSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130
P + ++ LL D LNEYAY A++AGL Y + +T G ++V GYN K ILL+
Sbjct: 555 YVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLK 614
Query: 131 TIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190
I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ + W E E
Sbjct: 615 KIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEA 674
Query: 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPS 250
L + L F+P +LSR +E + GNI A I+Q +ED + ++ +PL PS
Sbjct: 675 LDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAH--TKPLLPS 732
Query: 251 QHLTNRVVKL-EKG------KNYVYSNQGL 273
Q + R V+L ++G +N V++N G+
Sbjct: 733 QLVRYREVQLPDRGWFVYQQRNEVHNNCGI 762
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 148/270 (54%), Gaps = 11/270 (4%)
Query: 13 LPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA 70
LP N F+PT+ + + +P L++ ++ S LW+K D F PKA +N F P A
Sbjct: 524 LPTKNEFIPTNFEILALEKDATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFA 583
Query: 71 SSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130
P + ++ LL D LNEYAY A++AGL Y + +T G ++V GYN K ILL+
Sbjct: 584 YVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLK 643
Query: 131 TIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190
I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ + W E E
Sbjct: 644 KITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEA 703
Query: 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPS 250
L + L F+P +LSR +E + GNI A ++Q +ED + ++ +PL PS
Sbjct: 704 LDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGVMQMVEDTLIEHAH--TKPLLPS 761
Query: 251 QHLTNRVVKL-EKG------KNYVYSNQGL 273
Q + R V+L ++G +N V++N G+
Sbjct: 762 QLVRYREVQLPDRGWFVYQRRNEVHNNCGI 791
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 148/270 (54%), Gaps = 11/270 (4%)
Query: 13 LPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA 70
LP N F+PT+ + + +P L++ ++ S LW+K D F PKA +N F P A
Sbjct: 524 LPTKNEFIPTNFEILALEKDATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFA 583
Query: 71 SSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130
P + ++ LL D LNEYAY A++AGL Y + +T G ++V GYN K ILL+
Sbjct: 584 YVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLK 643
Query: 131 TIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190
I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ + W E E
Sbjct: 644 KITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEA 703
Query: 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPS 250
L + L F+P +LSR +E + GNI A ++Q +ED + ++ +PL PS
Sbjct: 704 LDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGVMQMVEDTLIEHAH--TKPLLPS 761
Query: 251 QHLTNRVVKL-EKG------KNYVYSNQGL 273
Q + R V+L ++G +N V++N G+
Sbjct: 762 QLVRYREVQLPDRGWFVYQRRNEVHNNCGI 791
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 148/270 (54%), Gaps = 11/270 (4%)
Query: 13 LPAPNVFVPTDLSLK--DTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHA 70
LP N F+PT+ + + +P L++ ++ S LW+K D F PKA +N F P A
Sbjct: 483 LPTKNEFIPTNFEILALEKDATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFA 542
Query: 71 SSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130
P + ++ LL D LNEYAY A++AGL Y + +T G ++V GYN K ILL+
Sbjct: 543 YVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLK 602
Query: 131 TIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190
I +K+A F++ RF +IKE + +N + QP+Q AMYY L++ + W E E
Sbjct: 603 KITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEA 662
Query: 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQPLFPS 250
L + L F+P +LSR +E + GNI A ++Q +ED + ++ +PL PS
Sbjct: 663 LDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGVMQMVEDTLIEHAH--TKPLLPS 720
Query: 251 QHLTNRVVKL-EKG------KNYVYSNQGL 273
Q + R V+L ++G +N V++N G+
Sbjct: 721 QLVRYREVQLPDRGWFVYQRRNEVHNNCGI 750
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 117/279 (41%), Gaps = 13/279 (4%)
Query: 1 DWILSAPKENLHLPAPNVFVPTDLSL-KDTQEAKFPVLLRKSSYSTLWYKPDTMF-STPK 58
DW A L LP N ++P D SL K ++ P L+ S + Y P F S PK
Sbjct: 465 DWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPK 524
Query: 59 AFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTV 118
A V++ P A S ++V+ + L L++ + A V G+ + N G V
Sbjct: 525 ADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTN-ANNGLMVNA 583
Query: 119 VGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQ 178
GY +L L + + + + D+ K + + + + ++ A+ ++ Q
Sbjct: 584 NGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQ 643
Query: 179 DQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 238
+ E ++LP + +++ + + S E + GN+ +A ++ + ++
Sbjct: 644 VPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGA 703
Query: 239 GSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSD 277
+ C+ N+ V ++K ++ ++ G N +D
Sbjct: 704 DGSEWCR---------NKDVVVDKKQSVIFEKAG-NSTD 732
>pdb|2H32|A Chain A, Crystal Structure Of The Pre-B Cell Receptor
Length = 126
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 122 NHKLRILLETIFQK-IAQFKVQPDRFSVIKEMV-TKEYHNNKFLQPYQLAMYYCSL 175
H R LL Q +Q P RFS K++ + Y + LQP AMYYC++
Sbjct: 43 GHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAM 98
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 168 LAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMM--LSRTFLECYIAGNIESNEA 225
L + C ++ + EL + L D +FVP+ ++R E +I++ E
Sbjct: 753 LGGFVCQAVVAEA------ELWKVGQLTPGDTIQFVPLSYGVARQLKESQDK-SIDNFEE 805
Query: 226 GSIIQYIED-VFFKGSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSC--- 281
GS+++ +D + K NPI L L+ +V + G Y+ G D N C
Sbjct: 806 GSLLELSDDKILPKYENPILAVLPKKSDLSPKVTYRQAGDRYILVEYGELEFDLNICYRI 865
Query: 282 --LVHYIQ 287
L+H ++
Sbjct: 866 NRLIHQVE 873
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,992,080
Number of Sequences: 62578
Number of extensions: 370406
Number of successful extensions: 833
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 20
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)