Query 042270
Match_columns 287
No_of_seqs 148 out of 1080
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 100.0 3.7E-49 8E-54 378.0 28.9 285 1-287 474-760 (974)
2 COG1025 Ptr Secreted/periplasm 100.0 3.6E-43 7.8E-48 332.0 28.3 274 2-284 468-743 (937)
3 PRK15101 protease3; Provisiona 100.0 1.4E-38 3E-43 319.3 33.2 274 2-287 489-764 (961)
4 TIGR02110 PQQ_syn_pqqF coenzym 99.6 3.5E-14 7.7E-19 136.0 22.2 199 38-239 3-213 (696)
5 COG0612 PqqL Predicted Zn-depe 99.6 4.3E-14 9.3E-19 130.8 17.6 201 35-238 17-225 (438)
6 PRK15101 protease3; Provisiona 99.5 2E-12 4.3E-17 130.6 17.6 206 31-239 40-258 (961)
7 PF00675 Peptidase_M16: Insuli 99.0 7.9E-09 1.7E-13 81.3 11.9 132 45-179 1-137 (149)
8 PTZ00432 falcilysin; Provision 98.9 4.3E-08 9.4E-13 99.8 16.2 197 37-238 94-331 (1119)
9 KOG0960 Mitochondrial processi 98.9 1.1E-07 2.3E-12 83.5 16.1 197 37-237 36-240 (467)
10 KOG2067 Mitochondrial processi 98.3 1.4E-05 3E-10 70.5 12.7 196 39-239 29-232 (472)
11 COG1025 Ptr Secreted/periplasm 98.2 0.00013 2.7E-09 71.5 17.9 203 35-241 24-240 (937)
12 KOG0959 N-arginine dibasic con 97.8 0.0014 2.9E-08 65.3 17.0 204 35-241 28-245 (974)
13 KOG2583 Ubiquinol cytochrome c 97.7 0.0016 3.4E-08 57.9 14.8 182 41-232 29-221 (429)
14 PF05193 Peptidase_M16_C: Pept 97.6 0.00023 5E-09 56.9 7.3 47 193-239 1-47 (184)
15 COG1026 Predicted Zn-dependent 97.4 0.018 3.8E-07 57.2 18.2 178 42-232 29-236 (978)
16 KOG2067 Mitochondrial processi 97.3 0.0031 6.8E-08 56.1 10.3 147 74-228 302-452 (472)
17 PTZ00432 falcilysin; Provision 96.9 0.062 1.3E-06 55.7 17.1 192 41-236 666-897 (1119)
18 COG0612 PqqL Predicted Zn-depe 96.8 0.016 3.4E-07 53.8 11.1 145 77-222 274-433 (438)
19 PF08367 M16C_assoc: Peptidase 96.5 0.017 3.8E-07 49.3 8.5 128 32-163 67-212 (248)
20 KOG0961 Predicted Zn2+-depende 96.4 0.025 5.4E-07 53.9 9.5 127 113-241 100-240 (1022)
21 KOG0960 Mitochondrial processi 96.3 0.17 3.7E-06 45.4 13.7 173 43-221 258-450 (467)
22 COG1026 Predicted Zn-dependent 95.9 0.96 2.1E-05 45.4 18.1 186 45-236 538-757 (978)
23 PF05193 Peptidase_M16_C: Pept 95.2 0.23 5E-06 39.2 9.7 95 58-153 79-184 (184)
24 KOG2019 Metalloendoprotease HM 86.0 37 0.0008 33.4 17.2 179 41-221 294-497 (998)
25 KOG0961 Predicted Zn2+-depende 84.4 8 0.00017 37.7 9.2 122 114-236 636-773 (1022)
26 KOG2583 Ubiquinol cytochrome c 71.1 84 0.0018 28.8 13.3 101 114-221 318-421 (429)
27 KOG2019 Metalloendoprotease HM 66.1 1.4E+02 0.0031 29.6 18.8 198 35-237 561-792 (998)
28 PF09851 SHOCT: Short C-termin 61.4 19 0.0004 19.9 3.4 26 129-154 5-30 (31)
29 PF01729 QRPTase_C: Quinolinat 51.2 20 0.00043 28.7 3.4 44 192-235 107-151 (169)
30 PF08494 DEAD_assoc: DEAD/H as 46.9 83 0.0018 25.5 6.5 40 72-121 28-67 (187)
31 PF12674 Zn_ribbon_2: Putative 43.6 45 0.00097 23.1 3.8 39 192-237 40-78 (81)
32 KOG0088 GTPase Rab21, small G 41.9 57 0.0012 25.9 4.5 39 194-232 99-148 (218)
33 PRK08385 nicotinate-nucleotide 41.5 60 0.0013 28.2 5.1 41 191-231 208-251 (278)
34 PF00531 Death: Death domain; 36.8 70 0.0015 21.5 4.1 42 165-206 39-82 (83)
35 PRK14429 acylphosphatase; Prov 36.1 70 0.0015 22.5 4.0 38 97-134 24-62 (90)
36 PRK14425 acylphosphatase; Prov 36.0 63 0.0014 23.0 3.7 38 97-134 28-66 (94)
37 PRK14420 acylphosphatase; Prov 35.7 73 0.0016 22.4 4.0 38 98-135 25-63 (91)
38 PTZ00179 60S ribosomal protein 35.4 1.3E+02 0.0029 24.5 5.9 55 71-125 59-120 (189)
39 PRK09016 quinolinate phosphori 34.9 78 0.0017 27.8 4.8 39 191-231 234-272 (296)
40 PRK05848 nicotinate-nucleotide 34.7 82 0.0018 27.3 4.9 41 191-231 208-249 (273)
41 PRK05986 cob(I)alamin adenolsy 34.1 88 0.0019 25.6 4.7 68 168-237 102-174 (191)
42 PRK06559 nicotinate-nucleotide 33.7 83 0.0018 27.6 4.8 45 191-237 223-267 (290)
43 PRK06978 nicotinate-nucleotide 33.3 84 0.0018 27.6 4.7 44 191-236 231-274 (294)
44 TIGR03654 L6_bact ribosomal pr 33.2 2.5E+02 0.0055 22.4 8.6 52 72-124 56-111 (175)
45 PRK14430 acylphosphatase; Prov 32.7 73 0.0016 22.5 3.6 36 97-132 26-62 (92)
46 PF11116 DUF2624: Protein of u 32.3 69 0.0015 22.4 3.3 33 190-232 11-43 (85)
47 PRK14449 acylphosphatase; Prov 32.2 88 0.0019 22.0 3.9 38 98-135 26-64 (90)
48 TIGR01669 phage_XkdX phage unc 31.6 22 0.00048 21.6 0.7 35 195-229 5-41 (45)
49 PRK14440 acylphosphatase; Prov 31.4 81 0.0018 22.2 3.7 36 98-133 26-62 (90)
50 COG0157 NadC Nicotinate-nucleo 31.1 92 0.002 27.0 4.5 46 191-236 214-259 (280)
51 PRK14431 acylphosphatase; Prov 31.1 84 0.0018 22.1 3.7 38 97-134 24-61 (89)
52 PRK07896 nicotinate-nucleotide 30.5 1.1E+02 0.0024 26.8 5.0 41 191-231 225-266 (289)
53 PF07350 DUF1479: Protein of u 30.0 63 0.0014 29.8 3.5 94 143-240 4-103 (416)
54 PRK06543 nicotinate-nucleotide 29.5 96 0.0021 27.1 4.5 44 191-236 219-262 (281)
55 PF07521 RMMBL: RNA-metabolisi 29.5 58 0.0013 19.3 2.3 25 193-219 17-41 (43)
56 TIGR01334 modD putative molybd 28.9 1.2E+02 0.0026 26.4 4.9 40 192-231 215-255 (277)
57 PRK14435 acylphosphatase; Prov 28.8 1E+02 0.0022 21.7 3.8 37 97-133 24-61 (90)
58 PRK14445 acylphosphatase; Prov 28.6 1E+02 0.0022 21.7 3.8 37 97-133 26-63 (91)
59 PRK05498 rplF 50S ribosomal pr 28.4 3.1E+02 0.0068 22.0 8.5 52 72-124 57-112 (178)
60 PRK14444 acylphosphatase; Prov 28.0 98 0.0021 21.8 3.6 37 97-133 26-63 (92)
61 PRK14451 acylphosphatase; Prov 27.7 1.1E+02 0.0023 21.5 3.7 37 97-133 25-62 (89)
62 PRK14436 acylphosphatase; Prov 27.4 1E+02 0.0023 21.7 3.7 36 98-133 27-63 (91)
63 PF04472 DUF552: Protein of un 26.5 2E+02 0.0043 19.1 4.9 43 194-237 7-49 (73)
64 PF00708 Acylphosphatase: Acyl 26.2 1.3E+02 0.0028 20.9 4.0 38 98-135 27-65 (91)
65 PRK14427 acylphosphatase; Prov 26.1 1.3E+02 0.0029 21.3 4.0 38 98-135 29-67 (94)
66 PRK14424 acylphosphatase; Prov 26.0 1.2E+02 0.0025 21.6 3.7 36 98-133 30-66 (94)
67 CHL00140 rpl6 ribosomal protei 26.0 3.5E+02 0.0076 21.7 8.8 52 72-124 57-112 (178)
68 COG3411 Ferredoxin [Energy pro 25.6 91 0.002 20.5 2.7 22 211-232 23-44 (64)
69 PRK14422 acylphosphatase; Prov 25.6 1.3E+02 0.0028 21.3 3.9 38 98-135 29-67 (93)
70 PRK14428 acylphosphatase; Prov 25.4 1.2E+02 0.0026 21.8 3.7 36 98-133 31-67 (97)
71 TIGR03653 arch_L6P archaeal ri 25.4 3.5E+02 0.0077 21.6 7.9 54 72-125 53-113 (170)
72 PRK14446 acylphosphatase; Prov 25.3 1.2E+02 0.0027 21.2 3.7 37 97-133 24-61 (88)
73 PRK14447 acylphosphatase; Prov 25.2 1.3E+02 0.0028 21.4 3.9 36 98-133 27-64 (95)
74 PRK06096 molybdenum transport 25.1 1.5E+02 0.0032 26.0 4.8 45 192-236 216-261 (284)
75 KOG3460 Small nuclear ribonucl 25.0 23 0.0005 24.3 -0.1 48 111-158 25-72 (91)
76 PRK07428 nicotinate-nucleotide 24.9 1.6E+02 0.0034 25.8 5.0 40 192-231 223-263 (288)
77 PRK14448 acylphosphatase; Prov 24.9 1.3E+02 0.0027 21.2 3.7 36 98-133 25-61 (90)
78 PRK14438 acylphosphatase; Prov 24.8 1.3E+02 0.0029 21.1 3.8 36 98-133 26-62 (91)
79 PRK14423 acylphosphatase; Prov 24.3 1.4E+02 0.003 21.1 3.8 36 98-133 28-64 (92)
80 PRK06106 nicotinate-nucleotide 24.0 1.4E+02 0.003 26.0 4.5 39 191-231 220-258 (281)
81 PRK05518 rpl6p 50S ribosomal p 23.9 3.9E+02 0.0084 21.6 7.9 54 71-124 58-118 (180)
82 PRK14442 acylphosphatase; Prov 22.9 1.4E+02 0.0031 21.0 3.7 37 97-133 26-63 (91)
83 PRK14426 acylphosphatase; Prov 22.2 1.5E+02 0.0033 20.8 3.7 38 97-134 26-64 (92)
84 PRK14443 acylphosphatase; Prov 22.1 1.5E+02 0.0032 21.1 3.6 37 98-134 27-64 (93)
85 PRK14452 acylphosphatase; Prov 21.6 1.4E+02 0.0031 21.8 3.5 36 97-132 42-78 (107)
86 PF09432 THP2: Tho complex sub 21.4 3.6E+02 0.0077 20.5 5.5 100 113-234 26-125 (132)
87 COG1099 Predicted metal-depend 21.2 4.4E+02 0.0095 22.3 6.6 145 80-233 41-202 (254)
88 PF00017 SH2: SH2 domain; Int 21.2 57 0.0012 21.7 1.3 16 216-231 2-17 (77)
89 COG1054 Predicted sulfurtransf 21.1 1.6E+02 0.0034 26.0 4.1 131 99-230 31-193 (308)
90 PRK14434 acylphosphatase; Prov 20.9 2E+02 0.0044 20.3 4.1 37 98-134 25-64 (92)
91 PRK14433 acylphosphatase; Prov 20.7 1.8E+02 0.0039 20.3 3.8 36 98-133 24-60 (87)
92 PRK14450 acylphosphatase; Prov 20.7 1.8E+02 0.0038 20.4 3.8 36 98-133 25-62 (91)
93 PRK14421 acylphosphatase; Prov 20.6 1.6E+02 0.0034 21.2 3.5 36 98-133 27-63 (99)
94 PF04444 Dioxygenase_N: Catech 20.5 2.2E+02 0.0047 19.3 4.0 34 125-158 8-41 (74)
95 PRK14441 acylphosphatase; Prov 20.4 1.8E+02 0.0039 20.5 3.8 37 97-133 27-64 (93)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-49 Score=378.04 Aligned_cols=285 Identities=41% Similarity=0.747 Sum_probs=269.8
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCccccCC--CCCCCCeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHH
Q 042270 1 DWILSAPKENLHLPAPNVFVPTDLSLKDT--QEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEV 78 (287)
Q Consensus 1 ~w~~~~~~~~l~LP~~N~fip~~f~~~~~--~~~~~P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~ 78 (287)
+|.++.++++|+||+||.|||+||++++. ....+|++|.+++..++||++|+.|+.||+.+.+.+.+|.+..++.+++
T Consensus 474 ~~~~~~~~~~l~lP~~nefI~t~f~~~~~~~~~~~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~ 553 (974)
T KOG0959|consen 474 EWENSHLNPELHLPTPNEFIPTDFSILPAPIPKLEYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSV 553 (974)
T ss_pred HhhccCccccccCCCCCcccccccccccccCccccCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHH
Confidence 47777888999999999999999999886 4577899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHh
Q 042270 79 LTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYH 158 (287)
Q Consensus 79 l~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~ 158 (287)
++.+|+.++.+.++|..|+|..||++++++.+..|+.++|+||++|++.+++.+++.+.++.+++++|+.+|+.+.++++
T Consensus 554 l~~l~~~~l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~ 633 (974)
T KOG0959|consen 554 LSTLYVRLLKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELR 633 (974)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcC
Q 042270 159 NNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 238 (287)
Q Consensus 159 n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 238 (287)
|...++|+.+|.+++..++.+..|+.++++++|+.++++|+..|...++++.+++++|+||+++++|.++++.+.+.++
T Consensus 634 n~~~~~p~~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l~- 712 (974)
T KOG0959|consen 634 NHAFDNPYQLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDILK- 712 (974)
T ss_pred hhhhccHHHHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhhh-
Confidence 9888889999999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred CCCCCCCCCCCCCcCccceEEeCCCceEEEecCCCCCCCCCeEEEEEEC
Q 042270 239 GSNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ 287 (287)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~ns~v~~y~Q 287 (287)
...+.+.|+...+....+.++||.|.+++|+.. .|+.|+|||+.+|||
T Consensus 713 ~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~-~n~~~~ns~i~~~~Q 760 (974)
T KOG0959|consen 713 SAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHL-LNKTDDNSCIEVYYQ 760 (974)
T ss_pred ccCCCCccccccccCcccceeccCCceEEEEcc-cccCCCCceEEEEEE
Confidence 333226677778889999999999999988877 788999999999998
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-43 Score=331.96 Aligned_cols=274 Identities=28% Similarity=0.509 Sum_probs=253.6
Q ss_pred CccCCCCCCCCCCCCCCCCCCCccccCC-CCCCCCeEeecCCCceEEEeCCCcccc-cceEEEEEEeCCCCCCCHHHHHH
Q 042270 2 WILSAPKENLHLPAPNVFVPTDLSLKDT-QEAKFPVLLRKSSYSTLWYKPDTMFST-PKAFVNIYFNCPHASSSPESEVL 79 (287)
Q Consensus 2 w~~~~~~~~l~LP~~N~fip~~f~~~~~-~~~~~P~~i~~~~~~~vw~~~d~~f~~-Pk~~i~i~i~~~~~~~~~~~~~l 79 (287)
|+......++.||.||+|||++|++++. ...+.|.++.+.++.++||++++.|++ ||+.+.+.|++|.+..|+++.++
T Consensus 468 ~~~~~~~~~l~lP~~N~fIp~~~~~~~~~~~~~~p~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl 547 (937)
T COG1025 468 WQQKADSIELSLPEPNPFIPDDVSLIKSEKKFTFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVL 547 (937)
T ss_pred hhcccccccccCCCCCCCCCccccccccccCCCCchhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHH
Confidence 6666667889999999999999999776 567789999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhh
Q 042270 80 TDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHN 159 (287)
Q Consensus 80 ~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n 159 (287)
..|++.+++++|.+..|+|..||+++++.++.+|+.|+++||+++++.+++.+++.+.+..+++++|+.+|+++.++|++
T Consensus 548 ~~l~~~la~dal~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~ 627 (937)
T COG1025 548 TELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKN 627 (937)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 160 NKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 160 ~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
.....|++++.+.+..++..++|+.+|++++|++++++++.+|+..++++.+++++|+||++.++|.++.+.+...+...
T Consensus 628 a~~~~p~~~~~~~l~~l~~~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~ 707 (937)
T COG1025 628 ALTGKPYRQALDGLTGLLQVPYWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAI 707 (937)
T ss_pred hhhcCCHHHHHHHhhhhhCCCCcCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888765
Q ss_pred CCCCCCCCCCCCcCccceEEeCCCceEEEecCCCCCCCCCeEEEE
Q 042270 240 SNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVH 284 (287)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~ns~v~~ 284 (287)
++ .+...+.+.+++|++..++..+.++++.|+|+.+
T Consensus 708 ~s---------~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~ 743 (937)
T COG1025 708 GS---------TWYRNPSVYLLKGGTRIFETVGGESDSANAAILY 743 (937)
T ss_pred CC---------cccCCCceeccCCCeeEeeeccCCcccccceeEe
Confidence 43 2244556777788888888887777777777654
No 3
>PRK15101 protease3; Provisional
Probab=100.00 E-value=1.4e-38 Score=319.28 Aligned_cols=274 Identities=20% Similarity=0.350 Sum_probs=240.5
Q ss_pred CccCCCCCCCCCCCCCCCCCCCccccCC-CCCCCCeEeecCCCceEEEeCCCcc-cccceEEEEEEeCCCCCCCHHHHHH
Q 042270 2 WILSAPKENLHLPAPNVFVPTDLSLKDT-QEAKFPVLLRKSSYSTLWYKPDTMF-STPKAFVNIYFNCPHASSSPESEVL 79 (287)
Q Consensus 2 w~~~~~~~~l~LP~~N~fip~~f~~~~~-~~~~~P~~i~~~~~~~vw~~~d~~f-~~Pk~~i~i~i~~~~~~~~~~~~~l 79 (287)
|.+....+.|+||++|+|||+||++++. .....|++|.+++|++|||++|+.| .+||+.+.+.|++|...+++.+.++
T Consensus 489 ~~~~~~~~~l~lP~~n~fip~~~~~~~~~~~~~~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l 568 (961)
T PRK15101 489 WQQKAQNIALSLPELNPYIPDDFSLIKADKAYKHPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVL 568 (961)
T ss_pred HhcCCCCccCCCCCCCCccCCCCeeccCCCCCCCCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHH
Confidence 6666677889999999999999999887 4456799999999999999999999 5999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhh
Q 042270 80 TDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHN 159 (287)
Q Consensus 80 ~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n 159 (287)
+.|++.++++.+++..|.|.+||++++++ +.+|+.++++||+++++.++..+++.+.++.+++++|+++|+.+++++++
T Consensus 569 ~~L~~~ll~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~ 647 (961)
T PRK15101 569 FALNDYLAGLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDS 647 (961)
T ss_pred HHHHHHHHHHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred hcccChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 160 NKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 160 ~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
...+.|+.++...+..+..+++++..+..++|+++|++|+++|+++++++.+++++|+||+++++|.++++.+.+.++..
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~py~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~ 727 (961)
T PRK15101 648 AEKGKAYEQAIMPAQMLSQVPYFERDERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGAD 727 (961)
T ss_pred hcccCcHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccC
Confidence 98877999998877776677778788899999999999999999999999999999999999999999999999888643
Q ss_pred CCCCCCCCCCCCcCccceEEeCCCceEEEecCCCCCCCCCeEEEEEEC
Q 042270 240 SNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ 287 (287)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~ns~v~~y~Q 287 (287)
+. .....+.+.++++...++... ...+.++++..|+|
T Consensus 728 ~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 764 (961)
T PRK15101 728 GT---------EWWRGKDVVVDKKQSVNFEKA--GSSTDSALAAVYVP 764 (961)
T ss_pred Cc---------ccccccceEeCCCCeEEEecC--CCCCCCeEEEEEEe
Confidence 21 112233455666655555543 22355778887775
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.64 E-value=3.5e-14 Score=135.98 Aligned_cols=199 Identities=11% Similarity=-0.004 Sum_probs=168.5
Q ss_pred eecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhhhhhcceEEEEeeeC
Q 042270 38 LRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNE------YAYYAQVAGLYYGINHTE 111 (287)
Q Consensus 38 i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e------~~y~a~~agl~~~~~~~~ 111 (287)
+..+||++|++.+++. .|.+.+.+.+..+...++....+++.++..|+-.+... ..-..+..|-+++.+.+.
T Consensus 3 ~tL~NGLrVllv~~p~--~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~ 80 (696)
T TIGR02110 3 ITLPNGLRVHLYHQPD--AKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLE 80 (696)
T ss_pred EEcCCCCEEEEEECCC--CCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcC
Confidence 4567999999999988 89999999999999888888999999999999876543 222233457788888888
Q ss_pred ceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC-----HH
Q 042270 112 GGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTWP-----WT 185 (287)
Q Consensus 112 ~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~-----~~ 185 (287)
+...+.++..+++++..+..+.+.+.++.+++++|++.|+.++.+++....+ |..++...+...++. +.|. ..
T Consensus 81 d~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~dd-p~~~~~~~l~~~l~~~HPy~~~~iGt~ 159 (696)
T TIGR02110 81 RTTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQND-ADTLREAALLDALQAGHPLRRFHAGSR 159 (696)
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 8999999999999999999999999999999999999999999999988655 999999988888874 3343 34
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 186 EELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 186 e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
+.++.+..++.+|+++|+++++...++.+.|+||++.+++.++++.+.+.++.+
T Consensus 160 esL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~ 213 (696)
T TIGR02110 160 DSLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAG 213 (696)
T ss_pred HHHhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCC
Confidence 445555456699999999999999999999999999999999998887777543
No 5
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=99.60 E-value=4.3e-14 Score=130.78 Aligned_cols=201 Identities=11% Similarity=0.066 Sum_probs=174.1
Q ss_pred CeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhhhhhcceEEEEee
Q 042270 35 PVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLN-----EYAYYAQVAGLYYGINH 109 (287)
Q Consensus 35 P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~ 109 (287)
...-..++|++++..++.+ .|.+.+.+.+..+....+....+++.++.-|+-++.. +.....+..|-..+...
T Consensus 17 ~~~~~L~nGl~~~~~~~~~--~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 17 LQVFTLPNGLRVITYPNPT--APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ceEEEcCCCCEEEEEeCCC--CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 5677788999999999988 9999999999988888899999999999999977643 34444556676666665
Q ss_pred eCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCC--CHHH
Q 042270 110 TEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTW--PWTE 186 (287)
Q Consensus 110 ~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~--~~~e 186 (287)
+.+.....++..+++++..++.+.+.+.++.|++++|++.|..++++++....+ |...+...+...+++ +++ +...
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~-p~~~~~~~l~~~~~~~~p~~~~~~G 173 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDD-PDDLAFERLLEALYGNHPLGRPILG 173 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHhhccCCCCCCCCC
Confidence 555555555567899999999999999999999999999999999999999887 999999999999986 443 4566
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcC
Q 042270 187 ELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 238 (287)
Q Consensus 187 ~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 238 (287)
..+.++++|.+|+++|+++|+.+.++.++|+||++.+++.++++.....++.
T Consensus 174 ~~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~ 225 (438)
T COG0612 174 TEESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPG 225 (438)
T ss_pred CHHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCc
Confidence 7889999999999999999999999999999999999999999999888885
No 6
>PRK15101 protease3; Provisional
Probab=99.46 E-value=2e-12 Score=130.63 Aligned_cols=206 Identities=11% Similarity=0.034 Sum_probs=170.7
Q ss_pred CCCCCeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh----hhhh--hhcceE
Q 042270 31 EAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEY----AYYA--QVAGLY 104 (287)
Q Consensus 31 ~~~~P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~----~y~a--~~agl~ 104 (287)
+....+.+..++|++|++.+|+. .|++.+.+.+..|...++....+++.++.-|+-.+.... .+.. +..|-+
T Consensus 40 d~~~~~~~~L~NGL~v~l~~~~~--~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~ 117 (961)
T PRK15101 40 DPRQYQAIRLDNGMTVLLVSDPQ--AVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGS 117 (961)
T ss_pred CccceEEEEeCCCCEEEEEeCCC--CcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCC
Confidence 33456778889999999999998 899999999999988887788999999999997665321 2322 344556
Q ss_pred EEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC
Q 042270 105 YGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTWP 183 (287)
Q Consensus 105 ~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~ 183 (287)
++.+.+.+...+.++..++.++..|..+.+.+.+|.|+++++++.|..+..+++....+ |...+...+...+++ |+|+
T Consensus 118 ~NA~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~hp~~ 196 (961)
T PRK15101 118 HNASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSR-DGMRMAQVSAETINPAHPGS 196 (961)
T ss_pred ccceECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHhhCCCCCCcc
Confidence 77777778888999999999999999999999999999999999999999999977655 888888888877774 3443
Q ss_pred --HHHHHhhCCCC----CHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 184 --WTEELEVLPHL----EAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 184 --~~e~l~~L~~i----t~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
.....+.|+.+ +.+++++|+++++.+.++.+.|+||++.+++.++++..+..++.+
T Consensus 197 ~~~~G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~ 258 (961)
T PRK15101 197 RFSGGNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNK 258 (961)
T ss_pred cCCCCCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCC
Confidence 33445666665 799999999999999999999999999999999998888877654
No 7
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=98.99 E-value=7.9e-09 Score=81.30 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=113.9
Q ss_pred eEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhhhhhcceEEEEeeeCceEEEEEe
Q 042270 45 TLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLN-----EYAYYAQVAGLYYGINHTEGGFEVTVV 119 (287)
Q Consensus 45 ~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~gi~i~v~ 119 (287)
+|+..+++. .|.+.+.+.|..|...++..+.+++.|+..++..... +..-..+..|.+++...+.+.+.+.++
T Consensus 1 ~V~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~ 78 (149)
T PF00675_consen 1 KVVLVEDPG--SPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSAS 78 (149)
T ss_dssp EEEEEESTT--SSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEE
T ss_pred CEEEEEcCC--CCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEE
Confidence 467777776 8999999999999998999999999999888876532 222333456888899999999999999
Q ss_pred ecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC
Q 042270 120 GYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD 179 (287)
Q Consensus 120 G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~ 179 (287)
+.+++++.++..+.+.+.+|.+++++|++.|+.+..+++....+ |...+...+...++.
T Consensus 79 ~~~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~-~~~~~~~~l~~~~f~ 137 (149)
T PF00675_consen 79 VLSEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKEN-PQELAFEKLHSAAFR 137 (149)
T ss_dssp EEGGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHT
T ss_pred EecccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998776 989999988888876
No 8
>PTZ00432 falcilysin; Provisional
Probab=98.90 E-value=4.3e-08 Score=99.83 Aligned_cols=197 Identities=11% Similarity=0.045 Sum_probs=146.7
Q ss_pred EeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhhhhhcceE--EEEee
Q 042270 37 LLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNE-----YAYYAQVAGLY--YGINH 109 (287)
Q Consensus 37 ~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~agl~--~~~~~ 109 (287)
..+..+|.+|++...+.-..|-..+.|.+++|.... .+++-++.-++-.+... ......-.|++ ++...
T Consensus 94 ~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~d~----~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T 169 (1119)
T PTZ00432 94 YSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPPHND----KGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYT 169 (1119)
T ss_pred EEEcCCCCEEEEEecCCCccceeEEEEEecCCCCCC----cchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccC
Confidence 455668999999885542256788899999986433 57788877777655432 11111223333 34444
Q ss_pred eCceEEEEEeecCc-cHHHHHHHHHHHhccCCcChhHH--HH---------H--------------------HHHHHHHH
Q 042270 110 TEGGFEVTVVGYNH-KLRILLETIFQKIAQFKVQPDRF--SV---------I--------------------KEMVTKEY 157 (287)
Q Consensus 110 ~~~gi~i~v~G~s~-k~~~ll~~i~~~l~~~~~~~~~F--~~---------~--------------------k~~~~~~~ 157 (287)
+.+.....+...++ .+..++..+++.+.+|.+++++| .+ . |.-+..++
T Consensus 170 ~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Em 249 (1119)
T PTZ00432 170 FKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEM 249 (1119)
T ss_pred CCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHH
Confidence 55678888888887 49999999999999999988764 32 1 44467788
Q ss_pred hhhcccChHHHHHHHHHHhccCCCCC--HHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHH
Q 042270 158 HNNKFLQPYQLAMYYCSLILQDQTWP--WTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDV 235 (287)
Q Consensus 158 ~n~~~~~p~~~a~~~~~~ll~~~~~~--~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~ 235 (287)
+....+ |..++...+...++.+.|. .....+.|..+|++++++|+++++.+.++.++|+||++.+++.++++...+.
T Consensus 250 k~~~~~-p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~ 328 (1119)
T PTZ00432 250 KKRFSD-PLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYLTK 328 (1119)
T ss_pred HHhhCC-HHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHHhh
Confidence 877555 9999999887776655554 4567888999999999999999999999999999999999999999887766
Q ss_pred hcC
Q 042270 236 FFK 238 (287)
Q Consensus 236 l~~ 238 (287)
++.
T Consensus 329 ~~~ 331 (1119)
T PTZ00432 329 HPK 331 (1119)
T ss_pred ccc
Confidence 653
No 9
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-07 Score=83.47 Aligned_cols=197 Identities=7% Similarity=0.037 Sum_probs=158.9
Q ss_pred EeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhh---hh--cceEEEEeeeC
Q 042270 37 LLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYA---QV--AGLYYGINHTE 111 (287)
Q Consensus 37 ~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a---~~--agl~~~~~~~~ 111 (287)
.-..++|..|=-- ++ ..+.+.+.+-|.++...++.++.+.+.++--|.-.+.....-.| ++ -|...+.+.+.
T Consensus 36 vttL~NGlrVaTE-~~--~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytSR 112 (467)
T KOG0960|consen 36 VTTLPNGLRVATE-HN--SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTSR 112 (467)
T ss_pred EEEcCCCcEEEec-cC--CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhcccccc
Confidence 3445678777433 33 38999999999999999999999999999887766554333222 22 24444455566
Q ss_pred ceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-C--CCHHHHH
Q 042270 112 GGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ-T--WPWTEEL 188 (287)
Q Consensus 112 ~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~--~~~~e~l 188 (287)
+.-..-+.+++.+++..+..+.+.+++-.+.+.++++.|.-++|+.+..... -....++.+...-+.+ + .+...-.
T Consensus 113 eqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~-~~eVVfdhLHatafQgtPL~~tilGp~ 191 (467)
T KOG0960|consen 113 EQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKN-HQEVVFDHLHATAFQGTPLGRTILGPS 191 (467)
T ss_pred cceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhcCCcccccccChh
Confidence 6788889999999999999999999999999999999999999999998766 4567777777777654 2 4566678
Q ss_pred hhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhc
Q 042270 189 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 237 (287)
Q Consensus 189 ~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 237 (287)
+.+++|+.+|+++|++.-+...++.+...|+++-++..++++..+..+.
T Consensus 192 enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~ 240 (467)
T KOG0960|consen 192 ENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLS 240 (467)
T ss_pred hhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCc
Confidence 8899999999999999999999999999999999999999988766654
No 10
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.4e-05 Score=70.53 Aligned_cols=196 Identities=10% Similarity=0.026 Sum_probs=154.9
Q ss_pred ecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhhhhhcceEEEEeeeCce
Q 042270 39 RKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLN-----EYAYYAQVAGLYYGINHTEGG 113 (287)
Q Consensus 39 ~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~~~~g 113 (287)
...+|.++- -++++ -|-+.+.+.|.++.......-.+.+.++-.+.-.+.. +..-..+..|=.++.+.+.+.
T Consensus 29 tL~NGlkva--se~~p-g~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsSRet 105 (472)
T KOG2067|consen 29 TLPNGLKVA--SENTP-GQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSSRET 105 (472)
T ss_pred ecCCccEEe--ccCCC-CCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCcccccccHhh
Confidence 345677762 33343 4788999999999988888778888887777655432 333334455667888888889
Q ss_pred EEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-CCCHHH--HHhh
Q 042270 114 FEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ-TWPWTE--ELEV 190 (287)
Q Consensus 114 i~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~~~~e--~l~~ 190 (287)
+...++.+++.++.+++.+++.+.+|.+++++.+.+|..+.-+++....+ |.-...+++...-+.+ .....- -.+.
T Consensus 106 m~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~-Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~ 184 (472)
T KOG2067|consen 106 MMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMR-PEPLLTEMIHSAAYSGNTLGLPLLCPEEN 184 (472)
T ss_pred hHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccC-chhhHHHHHHHHHhccCcccccccCChhh
Confidence 99999999999999999999999999999999999999998888888777 8777777777666653 211111 1356
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
+..|+.+.+..|.+.++.+.++.+..+| +.-+++.++++.+...++..
T Consensus 185 i~~I~~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s~ 232 (472)
T KOG2067|consen 185 IDKINREVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPST 232 (472)
T ss_pred hhhhhHHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCcc
Confidence 7789999999999999999999999999 89999999999988877753
No 11
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00013 Score=71.45 Aligned_cols=203 Identities=11% Similarity=0.024 Sum_probs=150.9
Q ss_pred CeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh------hhhhhhhhcceEEEEe
Q 042270 35 PVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLN------EYAYYAQVAGLYYGIN 108 (287)
Q Consensus 35 P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~------e~~y~a~~agl~~~~~ 108 (287)
=+.|..++|+.+-...|.. .+|+...+.+..|...+.....++|-.+--|+-.+.. +..+..+.-|=+.+.+
T Consensus 24 y~~I~LpNGl~~LlisDP~--a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~ 101 (937)
T COG1025 24 YRAIKLPNGLRALLVSDPQ--ADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNAS 101 (937)
T ss_pred eeEEECCCCceEEEecCCC--CCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccc
Confidence 4578899999999999998 9999999999999876666679998887666653322 1111122334444444
Q ss_pred eeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC--CCCC---
Q 042270 109 HTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD--QTWP--- 183 (287)
Q Consensus 109 ~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~--~~~~--- 183 (287)
-..+.-..-+.--++.++..+..+++.+.+|-++++.-++.+..+-.++.....+.- .....+ .+.+.+ |+++
T Consensus 102 T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~-~R~~~~-~~~~~np~HP~srFs 179 (937)
T COG1025 102 TAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDG-WRMYQV-QALTANPGHPLSKFS 179 (937)
T ss_pred cCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchH-HHHHHH-HHhhcCCCCCccccC
Confidence 444445555556688999999999999999999999999999999999998876623 333333 344443 3333
Q ss_pred --HHHHHhhCCC-CCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCCCC
Q 042270 184 --WTEELEVLPH-LEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSN 241 (287)
Q Consensus 184 --~~e~l~~L~~-it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~ 241 (287)
.-+.+..... ...+++..|++++++...+.+.|+||=+.+++.+++..+.+.++.+..
T Consensus 180 ~GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~ 240 (937)
T COG1025 180 TGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRAR 240 (937)
T ss_pred CCChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCC
Confidence 2333333332 567899999999999999999999999999999999999998887644
No 12
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0014 Score=65.31 Aligned_cols=204 Identities=12% Similarity=-0.015 Sum_probs=145.2
Q ss_pred CeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh----hhhhhhhhc--ceEEEEe
Q 042270 35 PVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLN----EYAYYAQVA--GLYYGIN 108 (287)
Q Consensus 35 P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~----e~~y~a~~a--gl~~~~~ 108 (287)
=..+.-++|+++....|.+ +=++++.+.+..|...+....+++|-+.--|+=.+.. |-.|...++ |-+.+..
T Consensus 28 yr~~~L~Ngl~alLisDp~--tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~ 105 (974)
T KOG0959|consen 28 YRGIELTNGLRALLISDPK--TDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAY 105 (974)
T ss_pred eeEEEecCCceEEEecCCC--CCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccc
Confidence 3567889999999999976 5577888888888888888889999988777654432 333334333 2222222
Q ss_pred eeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--HH
Q 042270 109 HTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTWP--WT 185 (287)
Q Consensus 109 ~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~ 185 (287)
-..+.-...+.-=.+++..+|..+++.+..|-++++.-++-+..+..++++.... -...-..+...+-.+ ++++ ..
T Consensus 106 T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~-D~wr~~ql~~~l~~~~hp~~kF~t 184 (974)
T KOG0959|consen 106 TDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNS-DGWRFDQLLRSLSNPGHPYSKFST 184 (974)
T ss_pred cccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHhcCCCCcchhccc
Confidence 2222333333336678999999999999999999999999999999999999776 334444444444444 3333 12
Q ss_pred HHHhhCCCCC-----HHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCCCC
Q 042270 186 EELEVLPHLE-----AEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSN 241 (287)
Q Consensus 186 e~l~~L~~it-----~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~ 241 (287)
+..++|.+.. .+.+.+|++++++...+.+.|+|.-+.+....++....+.++.+..
T Consensus 185 GN~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~ 245 (974)
T KOG0959|consen 185 GNKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKK 245 (974)
T ss_pred cchhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCC
Confidence 2334444444 7889999999999999999999999999988877776666665443
No 13
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=97.74 E-value=0.0016 Score=57.88 Aligned_cols=182 Identities=10% Similarity=0.086 Sum_probs=137.9
Q ss_pred CCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhhhhhcceEEEEeeeCceEE
Q 042270 41 SSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNE-----YAYYAQVAGLYYGINHTEGGFE 115 (287)
Q Consensus 41 ~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~agl~~~~~~~~~gi~ 115 (287)
.+|..+--.. .. .|...+.+.|+.+....+..+.++.-++........++ ....-+..|=.++...+.+-|.
T Consensus 29 ~ngL~Vas~e-~~--~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~~~ 105 (429)
T KOG2583|consen 29 VNGLTVASRE-AP--TAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATRELIG 105 (429)
T ss_pred ccceEEEecc-CC--CcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeecceEE
Confidence 3566664443 33 79999999999999999988889888776666555543 3333456777888888899999
Q ss_pred EEEeecCccHHHHHHHHHHHhccCCcChhHHHHHH-HHHHHHHhhhcccChHHHHHHHHHHhccCC-----CCCHHHHHh
Q 042270 116 VTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIK-EMVTKEYHNNKFLQPYQLAMYYCSLILQDQ-----TWPWTEELE 189 (287)
Q Consensus 116 i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k-~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-----~~~~~e~l~ 189 (287)
++++...|..+..+..+.+.+..+.|.+=+.+... .++...+ ..++|+.++++.+...-+.+ .|++.-.
T Consensus 106 ~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l---~~~t~~~~a~e~lH~aAfRngLgnslY~p~~~-- 180 (429)
T KOG2583|consen 106 LTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADL---AYQTPYTIAIEQLHAAAFRNGLGNSLYSPGYQ-- 180 (429)
T ss_pred EEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHh---hhcChHHHHHHHHHHHHHhcccCCcccCCccc--
Confidence 99999999999999999999999999886666655 3333332 23349999999887776653 3554433
Q ss_pred hCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHH
Q 042270 190 VLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYI 232 (287)
Q Consensus 190 ~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~ 232 (287)
+.+++.+|+.+|.++-|-..++.++-. |++-+.+..+.++.
T Consensus 181 -vg~vss~eL~~Fa~k~fv~gn~~lvg~-nvd~~~L~~~~~~~ 221 (429)
T KOG2583|consen 181 -VGSVSSSELKDFAAKHFVKGNAVLVGV-NVDHDDLKQFADEY 221 (429)
T ss_pred -ccCccHHHHHHHHHHHhhccceEEEec-CCChHHHHHHHHHh
Confidence 567899999999999998777766544 58989988888776
No 14
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=97.61 E-value=0.00023 Score=56.86 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 193 HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 193 ~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
++|.+|+++|+++++.+.++.++|+||++.+++.++++.....++..
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~ 47 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKS 47 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHS
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccc
Confidence 58999999999999999999999999999999999999888888753
No 15
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=97.40 E-value=0.018 Score=57.21 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=122.4
Q ss_pred CCceEEEeCCCcccccceEEEEEEeCCCCCCCH-----HHHHHH--------HHHHHHHHHhhhhhhhhhhhcceEEEEe
Q 042270 42 SYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSP-----ESEVLT--------DIFTRLLHDYLNEYAYYAQVAGLYYGIN 108 (287)
Q Consensus 42 ~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~-----~~~~l~--------~l~~~ll~~~l~e~~y~a~~agl~~~~~ 108 (287)
.|.++.|.... .|....+|.|+++.-.++- +..+++ +.+..+++.+++..+=+..-.+.+ ++
T Consensus 29 TGa~l~hi~~~---d~~~vFsi~F~T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T--~Y 103 (978)
T COG1026 29 TGAELAHIKNE---DPNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKT--VY 103 (978)
T ss_pred CCceEEEecCC---CcCceEEEEeecCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcc--ee
Confidence 68899888765 5888999999987644332 222322 345677777776544443333322 22
Q ss_pred eeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHH--------------HHHHhhhcccChHHHHHHHHH
Q 042270 109 HTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMV--------------TKEYHNNKFLQPYQLAMYYCS 174 (287)
Q Consensus 109 ~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~--------------~~~~~n~~~~~p~~~a~~~~~ 174 (287)
+-. +-=-+.+-.++..-++.+..|-++++.|.+--=++ -.+.+....+ |..+....+.
T Consensus 104 P~s-------S~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss-~~~~~~~~~~ 175 (978)
T COG1026 104 PAS-------SANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSS-GESVLSRAMQ 175 (978)
T ss_pred ecc-------ccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccC-chhHHHHHHH
Confidence 110 01112356678888899999988888887543222 2233444444 8888889999
Q ss_pred HhccCC-C--CCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHH
Q 042270 175 LILQDQ-T--WPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYI 232 (287)
Q Consensus 175 ~ll~~~-~--~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~ 232 (287)
..+++. . +.-.+....|..+|+|++++||++++...+..+++.||+..++..+.++..
T Consensus 176 ~slfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~ 236 (978)
T COG1026 176 QSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEK 236 (978)
T ss_pred HhhCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHh
Confidence 999874 2 344567789999999999999999999999999999999999999887553
No 16
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0031 Score=56.08 Aligned_cols=147 Identities=13% Similarity=0.177 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHHHhccC--CcChhHHHHHH
Q 042270 74 PESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQKIAQF--KVQPDRFSVIK 150 (287)
Q Consensus 74 ~~~~~l~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~~l~~~--~~~~~~F~~~k 150 (287)
|.+-+.++||..+|++. ...|.|.. |+-+.++.| +.|..+.--+..++.+..+++.|.+. .+++++.+++|
T Consensus 302 PGKGMySrLY~~vLNry--~wv~sctA----fnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK 375 (472)
T KOG2067|consen 302 PGKGMYSRLYLNVLNRY--HWVYSCTA----FNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAK 375 (472)
T ss_pred CCcchHHHHHHHHHhhh--HHHHHhhh----hhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45667777777777753 23444332 333334555 78888888889999999999988765 47999999999
Q ss_pred HHHHHHHhhhcccChHHHHHHHHHHhccC-CCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHH
Q 042270 151 EMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSI 228 (287)
Q Consensus 151 ~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~ 228 (287)
.++...+--.....|.. +.++-++++-. ..-.++|.++.++++|.+|+.++-++++.. ...+...||++.--....
T Consensus 376 ~qlkS~LlMNLESR~V~-~EDvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~-~p~va~~Gd~~~lpt~~~ 452 (472)
T KOG2067|consen 376 TQLKSMLLMNLESRPVA-FEDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTG-KPSVAAFGDGTGLPTYDH 452 (472)
T ss_pred HHHHHHHHhcccccchh-HHHHhHHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcC-CceeccCCcccCCcchhh
Confidence 99999866554443644 44455555544 456899999999999999999999999865 456677899875544433
No 17
>PTZ00432 falcilysin; Provisional
Probab=96.86 E-value=0.062 Score=55.67 Aligned_cols=192 Identities=11% Similarity=0.060 Sum_probs=119.2
Q ss_pred CCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhh-------hhhcceEEEEeeeC-
Q 042270 41 SSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHD-YLNEYAYY-------AQVAGLYYGINHTE- 111 (287)
Q Consensus 41 ~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~-~l~e~~y~-------a~~agl~~~~~~~~- 111 (287)
.++..+++..-.+ .-.+++.+.|..+.. +....-+..||+.++.. ......|. ...-|+++++....
T Consensus 666 ~~~~~~~~~~~~T--nGi~y~~~~fdl~~l--~~e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~ 741 (1119)
T PTZ00432 666 GGSVTVLVHPIES--RGILYLDFAFSLDSL--TVDELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSE 741 (1119)
T ss_pred CCCcceEEEecCC--CCeEEEEEEecCCCC--CHHHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEecc
Confidence 4566676653222 235666666665543 45666777788888865 22222222 23456666544321
Q ss_pred -------------ceEEEEEeecCccHHHHHHHHHHHhccCCcCh-hHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhc
Q 042270 112 -------------GGFEVTVVGYNHKLRILLETIFQKIAQFKVQP-DRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLIL 177 (287)
Q Consensus 112 -------------~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~-~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll 177 (287)
..+.+++.+.+++++.++..+.+.|.+..|+. +++..+-++...++++...+.....|......-+
T Consensus 742 ~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~ 821 (1119)
T PTZ00432 742 TNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKF 821 (1119)
T ss_pred ccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcC
Confidence 25999999999999999999999999999965 4588888888888888877557777765444333
Q ss_pred cCC-----CCC---HHHHHhhC----CCCC----HHHHHHHHHHHhhhheeeEEEecCCChH-HHHHHHHHHHHHh
Q 042270 178 QDQ-----TWP---WTEELEVL----PHLE----AEDLAKFVPMMLSRTFLECYIAGNIESN-EAGSIIQYIEDVF 236 (287)
Q Consensus 178 ~~~-----~~~---~~e~l~~L----~~it----~edl~~f~~~~~~~~~~~~lv~GNi~~~-~a~~~~~~~~~~l 236 (287)
... .++ .-..+..| .+-. .+.|....+.+++..++.+.|.|+.+.- ...+.+..+.+.+
T Consensus 822 S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l 897 (1119)
T PTZ00432 822 SVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKL 897 (1119)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 311 111 11222221 1111 2346677778888889999999987433 3334444455555
No 18
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=96.76 E-value=0.016 Score=53.78 Aligned_cols=145 Identities=16% Similarity=0.186 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh--hhcceEEEEee-----eCce-EEEEEeec---CccHHHHHHHHHHHhccCC---cC
Q 042270 77 EVLTDIFTRLLHDYLNEYAYYA--QVAGLYYGINH-----TEGG-FEVTVVGY---NHKLRILLETIFQKIAQFK---VQ 142 (287)
Q Consensus 77 ~~l~~l~~~ll~~~l~e~~y~a--~~agl~~~~~~-----~~~g-i~i~v~G~---s~k~~~ll~~i~~~l~~~~---~~ 142 (287)
.....+...++.......++.. +..|+.|++++ ...| +.+.+.+- .++....+..+++.+.... ++
T Consensus 274 ~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t 353 (438)
T COG0612 274 YAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFT 353 (438)
T ss_pred hHHHHHHHHHhCCCcchHHHHHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCC
Confidence 3444444444444333333332 34566665552 1224 33333333 2456666777666666543 78
Q ss_pred hhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCC
Q 042270 143 PDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 143 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~ 221 (287)
+++++..|..+...+-..... |...+..+....... ..-+..+..+.++.+|.+|+.++.++++......+.++|+..
T Consensus 354 ~~~~~~~k~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~ 432 (438)
T COG0612 354 EEELDAAKQLLIGLLLLSLDS-PSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEK 432 (438)
T ss_pred HHHHHHHHHHHHHHhhhccCC-HHHHHHHHHHHHHhcCCccCHHHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcccc
Confidence 999999999988888877555 989888888888874 567899999999999999999999999998888999999865
Q ss_pred h
Q 042270 222 S 222 (287)
Q Consensus 222 ~ 222 (287)
.
T Consensus 433 ~ 433 (438)
T COG0612 433 A 433 (438)
T ss_pred c
Confidence 3
No 19
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=96.46 E-value=0.017 Score=49.31 Aligned_cols=128 Identities=14% Similarity=0.247 Sum_probs=77.1
Q ss_pred CCCCeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhh-------hhhcce
Q 042270 32 AKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHD-YLNEYAYY-------AQVAGL 103 (287)
Q Consensus 32 ~~~P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~-~l~e~~y~-------a~~agl 103 (287)
...|.....-+++.+++..-.+ .-.+++++.|..+... ....-+..|++.++.. ++....|. ...-|+
T Consensus 67 ~~~~~~~~~~~~~~v~~~~~~T--nGI~Y~~l~fdl~~l~--~e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGi 142 (248)
T PF08367_consen 67 EKIPLEVEKLGGIPVLFHEQPT--NGIVYVRLYFDLSDLP--EEDLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGI 142 (248)
T ss_dssp -----EECCCTTCEEEEEE-----TTEEEEEEEEE-TTS---CCCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEE
T ss_pred CCCCceeeecCCccEEEEEcCC--CCeEEEEEEecCCCCC--HHHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCe
Confidence 3345556565778888765544 5677888888776443 3334556666666654 22222222 234577
Q ss_pred EEEEeeeC---------ceEEEEEeecCccHHHHHHHHHHHhccCCcCh-hHHHHHHHHHHHHHhhhccc
Q 042270 104 YYGINHTE---------GGFEVTVVGYNHKLRILLETIFQKIAQFKVQP-DRFSVIKEMVTKEYHNNKFL 163 (287)
Q Consensus 104 ~~~~~~~~---------~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~-~~F~~~k~~~~~~~~n~~~~ 163 (287)
++++.... .++.|+..++.++++.++..+-+.|.+..|+. +++..+-.+....+++....
T Consensus 143 s~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~~i~~ 212 (248)
T PF08367_consen 143 SFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMESSIIS 212 (248)
T ss_dssp EEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhh
Confidence 77764322 26999999999999999999999999999965 46666666666666665444
No 20
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.025 Score=53.89 Aligned_cols=127 Identities=11% Similarity=0.125 Sum_probs=92.3
Q ss_pred eEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHH----------HHHHHhhhcccChHHHHHHHHHHhccCC--
Q 042270 113 GFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEM----------VTKEYHNNKFLQPYQLAMYYCSLILQDQ-- 180 (287)
Q Consensus 113 gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~----------~~~~~~n~~~~~p~~~a~~~~~~ll~~~-- 180 (287)
..+++.-|. |.+-.+|...++.|..|.++.+.|....-. +-.+.++...+ -..+...-...++++.
T Consensus 100 ~YtLStag~-dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~-~~~im~~~~~~~~yP~~s 177 (1022)
T KOG0961|consen 100 AYTLSTAGS-DGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESE-MESIMDRKTKEVIYPPFS 177 (1022)
T ss_pred eEEeecccc-cchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcc-cchhhhhhhheeecCCCC
Confidence 345555443 456667777888888898888888754321 12233333222 2344555666777763
Q ss_pred -C-CCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCCCC
Q 042270 181 -T-WPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSN 241 (287)
Q Consensus 181 -~-~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~ 241 (287)
+ +...+++..|+.+|.|.+++||++++...++-+.|-|+++.++...+++.+.+.+..+.+
T Consensus 178 gY~~eTGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s 240 (1022)
T KOG0961|consen 178 GYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMS 240 (1022)
T ss_pred CceeccCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccc
Confidence 2 345678899999999999999999999999999999999999999999999887776644
No 21
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.17 Score=45.36 Aligned_cols=173 Identities=13% Similarity=0.115 Sum_probs=114.9
Q ss_pred CceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-------------hhhhhhhhhhhcc--eEEEE
Q 042270 43 YSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHD-------------YLNEYAYYAQVAG--LYYGI 107 (287)
Q Consensus 43 ~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~-------------~l~e~~y~a~~ag--l~~~~ 107 (287)
|.++-++-|+ +|++++.|.+-..... ++.. ..+.+...++.. .|.+..-.-.++. .+|++
T Consensus 258 gsEvR~rdd~---lP~a~~AiAVEG~~w~-~pD~-~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt 332 (467)
T KOG0960|consen 258 GSEVRVRDDD---LPLAHIAIAVEGVSWA-HPDY-FALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNT 332 (467)
T ss_pred CceeeecCCC---CchhheeeeEecCCcC-CccH-HHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhc
Confidence 7788777664 7999999999876543 2222 122222233322 1111111112222 36777
Q ss_pred eeeCce-EEEEEee-cCccHHHHHHHHHHHhccC--CcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCC
Q 042270 108 NHTEGG-FEVTVVG-YNHKLRILLETIFQKIAQF--KVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTW 182 (287)
Q Consensus 108 ~~~~~g-i~i~v~G-~s~k~~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~ 182 (287)
+..+.| ..+.+-+ =...+..++..++..-... ..++.+-+++|.++...+-..... ...+|.+.-+++|.. .-.
T Consensus 333 ~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldg-ttpi~ediGrqlL~~Grri 411 (467)
T KOG0960|consen 333 SYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDG-TTPIAEDIGRQLLTYGRRI 411 (467)
T ss_pred ccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHhhcCCcC
Confidence 665555 3333333 3445667777766654433 579999999999999997766433 334588887888875 467
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCC
Q 042270 183 PWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 183 ~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~ 221 (287)
++.|.-+-++.||..++++...+++-...+-+..+|.+.
T Consensus 412 ~l~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 412 PLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred ChHHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 899999999999999999999999988889999999875
No 22
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=95.90 E-value=0.96 Score=45.43 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=117.9
Q ss_pred eEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-hhhh-------hhhcceEEEEeeeC-----
Q 042270 45 TLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNE-YAYY-------AQVAGLYYGINHTE----- 111 (287)
Q Consensus 45 ~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e-~~y~-------a~~agl~~~~~~~~----- 111 (287)
-+||...+ .-.+++.+.|..+.. +..-.-...||+..+...-.+ ..|. ...-|++++.++..
T Consensus 538 v~~~~~~t---n~i~yl~~~~~~~~l--~~~llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~ 612 (978)
T COG1026 538 VLHHDLFT---NGITYLRLYFDLDML--PSELLPYLPLFAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDD 612 (978)
T ss_pred eEEeecCC---CCeEEEEEEeecCCC--ChhhhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCCceeeEeeccCCCcc
Confidence 34555433 346677777777654 333445556666666552221 1221 12335555554432
Q ss_pred ----ceEEEEEeecCccHHHHHHHHHHHhccCCc-ChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-----C
Q 042270 112 ----GGFEVTVVGYNHKLRILLETIFQKIAQFKV-QPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ-----T 181 (287)
Q Consensus 112 ----~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~-~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-----~ 181 (287)
..+.+++..+++|...+++.|-+.|.+..| |.+|...+-+++..++.+...+.+...|......-+... .
T Consensus 613 ~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~ 692 (978)
T COG1026 613 GEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKEL 692 (978)
T ss_pred ccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHH
Confidence 258888899999999999999999999999 788898888999999999888778887777665555431 1
Q ss_pred ---CCHHHHHhhCCC-----CC---HHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHh
Q 042270 182 ---WPWTEELEVLPH-----LE---AEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 236 (287)
Q Consensus 182 ---~~~~e~l~~L~~-----it---~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 236 (287)
.+....+.+|.+ .. .+.+++.++.++...++.+++.|+++.... .+-+.+.+.+
T Consensus 693 ~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~~~~~-~~e~~l~~~~ 757 (978)
T COG1026 693 LNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDKILD-LLENPLLKFL 757 (978)
T ss_pred hcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChhhhHH-HHHHHhhhhh
Confidence 122223333322 11 234677788888888888999999874322 2224444444
No 23
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=95.19 E-value=0.23 Score=39.20 Aligned_cols=95 Identities=14% Similarity=0.227 Sum_probs=51.4
Q ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh--hc--ceEEEEeee--C--ceEEEEEeecCccHHHHH
Q 042270 58 KAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQ--VA--GLYYGINHT--E--GGFEVTVVGYNHKLRILL 129 (287)
Q Consensus 58 k~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~--~a--gl~~~~~~~--~--~gi~i~v~G~s~k~~~ll 129 (287)
...+.+.+..+.. .+........++..+|.......++... .. ++++..+.. . .-+.+.+.+-.++...++
T Consensus 79 ~~~v~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (184)
T PF05193_consen 79 QSIVSIAFPGPPI-KDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPENLDEAI 157 (184)
T ss_dssp SEEEEEEEEEEET-GTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGGHHHHH
T ss_pred ccccccccccccc-cccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcccHHHHH
Confidence 4444444443332 1333345555666666665333222222 12 222222221 1 347888888877877777
Q ss_pred HHHHHHhcc---CCcChhHHHHHHHHH
Q 042270 130 ETIFQKIAQ---FKVQPDRFSVIKEMV 153 (287)
Q Consensus 130 ~~i~~~l~~---~~~~~~~F~~~k~~~ 153 (287)
+.+.+.+.. ..+++++|+++|.++
T Consensus 158 ~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 158 EAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 766666644 358999999999875
No 24
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=85.99 E-value=37 Score=33.40 Aligned_cols=179 Identities=17% Similarity=0.164 Sum_probs=113.8
Q ss_pred CCCceEEEeCCCcccccceEEE--EEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc-ce--EEEEeeeCc---
Q 042270 41 SSYSTLWYKPDTMFSTPKAFVN--IYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVA-GL--YYGINHTEG--- 112 (287)
Q Consensus 41 ~~~~~vw~~~d~~f~~Pk~~i~--i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~a-gl--~~~~~~~~~--- 112 (287)
+-.+...+-.|.. -.|+-... +.+.++.. .+...+-...++..++-+.-+.-.|.|.+. |+ +++++++-+
T Consensus 294 p~rvve~~p~d~~-~~p~Kq~~~s~s~L~~~p-~d~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~t 371 (998)
T KOG2019|consen 294 PRRVVEKGPADPG-DLPKKQTKCSNSFLSNDP-LDTYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDTT 371 (998)
T ss_pred CceeeeecCCCCC-CCccceeEEEEEeecCCc-hhHHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCccc
Confidence 3344555556552 23543333 33444432 344456666777888888888888888653 44 555554332
Q ss_pred ---eEEEEEeecCc----cHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-C---
Q 042270 113 ---GFEVTVVGYNH----KLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ-T--- 181 (287)
Q Consensus 113 ---gi~i~v~G~s~----k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~--- 181 (287)
-++|.+.|-+| ++.+++..+++.+..-.|+.++.+.+-.++.-+++......-..++......-+.+. +
T Consensus 372 ~~~~fsVGLqGvseediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~d~DPfE~ 451 (998)
T KOG2019|consen 372 LQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWINDMDPFEP 451 (998)
T ss_pred ccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhccCCCccch
Confidence 48999999995 677888888888888789999999888888888877766544555555555555542 2
Q ss_pred CCHHHHHhhCCCC----CHHHHHHHHHHHh-h-hheeeEEEecCCC
Q 042270 182 WPWTEELEVLPHL----EAEDLAKFVPMML-S-RTFLECYIAGNIE 221 (287)
Q Consensus 182 ~~~~e~l~~L~~i----t~edl~~f~~~~~-~-~~~~~~lv~GNi~ 221 (287)
...++.++.++.- +-.=|+..+++|+ + +-.+..-+.|+=.
T Consensus 452 Lk~~~~L~~lk~~l~ek~~~lfq~lIkkYilnn~h~~t~smqpd~e 497 (998)
T KOG2019|consen 452 LKFEEQLKKLKQRLAEKSKKLFQPLIKKYILNNPHCFTFSMQPDPE 497 (998)
T ss_pred hhhhhHHHHHHHHHhhhchhHHHHHHHHHHhcCCceEEEEecCCch
Confidence 2345555655432 2334677777776 3 3477888888743
No 25
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.43 E-value=8 Score=37.66 Aligned_cols=122 Identities=13% Similarity=0.093 Sum_probs=81.0
Q ss_pred EEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC---CCCHHH----
Q 042270 114 FEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ---TWPWTE---- 186 (287)
Q Consensus 114 i~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~---~~~~~e---- 186 (287)
+.++|..=.++-+...+-|--.+....++++|....-++++.++...+-+ ....+..+....++.. -++.++
T Consensus 636 vn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRd-g~~vlss~~~~~lY~~~slk~s~d~L~~E 714 (1022)
T KOG0961|consen 636 VNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRD-GCTVLSSAVASMLYGKNSLKISFDELVLE 714 (1022)
T ss_pred eeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcC-ccEehHHHHHHHHhcccchhhcccHHHHH
Confidence 77778777888888888888888888999999999999999999988766 6666777777777753 133322
Q ss_pred -HHhhC----CCC---CHHHHHHHHHHHhhhheeeEEEecCCChHHH-HHHHHHHHHHh
Q 042270 187 -ELEVL----PHL---EAEDLAKFVPMMLSRTFLECYIAGNIESNEA-GSIIQYIEDVF 236 (287)
Q Consensus 187 -~l~~L----~~i---t~edl~~f~~~~~~~~~~~~lv~GNi~~~~a-~~~~~~~~~~l 236 (287)
+++.| ++= -++.+++...-.+....+.+.|+|+|++-+- +.-...+.+..
T Consensus 715 k~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn~l~~~~ 773 (1022)
T KOG0961|consen 715 KLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWNWLQADP 773 (1022)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCchhhhcCc
Confidence 22222 111 1333444433233456789999999986433 23344444443
No 26
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=71.14 E-value=84 Score=28.75 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=62.3
Q ss_pred EEEEEeecCccHHHHHHHHHHHhccCCc---ChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCCHHHHHhh
Q 042270 114 FEVTVVGYNHKLRILLETIFQKIAQFKV---QPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEV 190 (287)
Q Consensus 114 i~i~v~G~s~k~~~ll~~i~~~l~~~~~---~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~ 190 (287)
+.+.+.+=..+.....+.....++.-.. +-..-.-+...+...+.+. .. ++..+......+.. ++++.+..
T Consensus 318 ~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss-~~-a~~~~~~~~a~~~~----~~d~~i~~ 391 (429)
T KOG2583|consen 318 FGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSS-VE-ALELATGSQANLVS----EPDAFIQQ 391 (429)
T ss_pred EEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcc-hH-HHHHhhHHHhcCCC----ChHHHHHH
Confidence 6666777677777777777777765432 2222222222222222222 22 44444433332222 78999999
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCC
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~ 221 (287)
++.++-.|+.+..+++... .+-+..+||++
T Consensus 392 id~Vt~sdV~~a~kk~~s~-kls~aA~Gnl~ 421 (429)
T KOG2583|consen 392 IDKVTASDVQKAAKKFLSG-KLSLAAYGNLS 421 (429)
T ss_pred hccccHHHHHHHHHHhccC-cceeeeecccc
Confidence 9999999999999999843 46677899986
No 27
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=66.11 E-value=1.4e+02 Score=29.56 Aligned_cols=198 Identities=12% Similarity=0.069 Sum_probs=115.3
Q ss_pred CeEeecCCCceEEEe-CCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhh-----h--hhhhhhhcceEE
Q 042270 35 PVLLRKSSYSTLWYK-PDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHD-YLN-----E--YAYYAQVAGLYY 105 (287)
Q Consensus 35 P~~i~~~~~~~vw~~-~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~-~l~-----e--~~y~a~~agl~~ 105 (287)
|..+.+.+|+++-+. .++ --.+++++.+.... -.-+-.-+.-|||+.+-+ ... + ....-.--|++.
T Consensus 561 ~~~v~dingvkv~~~dl~t---ngi~Y~r~~~~l~~--~p~eL~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~ 635 (998)
T KOG2019|consen 561 KLEVGDINGVKVQRCDLFT---NGITYTRVVFDLNS--LPEELLPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISV 635 (998)
T ss_pred ceeeeeccCceeEEeeccC---CceEEEEEeecccc--CcHHhhcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceee
Confidence 455667778766443 322 23444444443332 222334445566665544 222 2 122223456776
Q ss_pred EEeeeCc------eEEEEEeec--CccHHHHHHHHHHHhccCCc-ChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHh
Q 042270 106 GINHTEG------GFEVTVVGY--NHKLRILLETIFQKIAQFKV-QPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLI 176 (287)
Q Consensus 106 ~~~~~~~------gi~i~v~G~--s~k~~~ll~~i~~~l~~~~~-~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~l 176 (287)
+.....+ ...|.++|+ ..+.+.+++..-+.+.+..| ++++|.++..+...+..|..-+.-...|.......
T Consensus 636 ~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~ 715 (998)
T KOG2019|consen 636 SPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAM 715 (998)
T ss_pred cceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcc
Confidence 6644321 233555554 55788889888888888887 56899999999999999988775566666666666
Q ss_pred ccCCCCCH--------HHHHhhCCCCC-------HHHHHHHHHHHhhhheeeEEEecC-CChHHHHHHHHHHHHHhc
Q 042270 177 LQDQTWPW--------TEELEVLPHLE-------AEDLAKFVPMMLSRTFLECYIAGN-IESNEAGSIIQYIEDVFF 237 (287)
Q Consensus 177 l~~~~~~~--------~e~l~~L~~it-------~edl~~f~~~~~~~~~~~~lv~GN-i~~~~a~~~~~~~~~~l~ 237 (287)
+...-|-. -+.+..|++.. .+.+.+..+.+++...+.+.|.-+ .+-..+.+.++.+.+.++
T Consensus 716 l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp 792 (998)
T KOG2019|consen 716 LTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLP 792 (998)
T ss_pred cCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhcc
Confidence 65533322 23344443333 233555566677777777777654 334445566777777776
No 28
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=61.39 E-value=19 Score=19.85 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=20.1
Q ss_pred HHHHHHHhccCCcChhHHHHHHHHHH
Q 042270 129 LETIFQKIAQFKVQPDRFSVIKEMVT 154 (287)
Q Consensus 129 l~~i~~~l~~~~~~~~~F~~~k~~~~ 154 (287)
+..+-+...+-.+++++|+..|.+++
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 45555666666789999999999875
No 29
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=51.19 E-value=20 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHh-hhheeeEEEecCCChHHHHHHHHHHHHH
Q 042270 192 PHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQYIEDV 235 (287)
Q Consensus 192 ~~it~edl~~f~~~~~-~~~~~~~lv~GNi~~~~a~~~~~~~~~~ 235 (287)
++.+.+++++.++... ...++.+.+.|+|+.+.+.++.+.=.+.
T Consensus 107 D~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~ 151 (169)
T PF01729_consen 107 DNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDV 151 (169)
T ss_dssp ES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SE
T ss_pred cCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCE
Confidence 4678999999998765 3456999999999999999887553333
No 30
>PF08494 DEAD_assoc: DEAD/H associated; InterPro: IPR013701 This domain is found in ATP-dependent helicases as well as a number of hypothetical proteins together with the helicase conserved C-terminal domain (IPR011545 from INTERPRO) and the IPR001650 from INTERPRO domain. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Probab=46.91 E-value=83 Score=25.46 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcceEEEEeeeCceEEEEEeec
Q 042270 72 SSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGY 121 (287)
Q Consensus 72 ~~~~~~~l~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~i~v~G~ 121 (287)
....+.+++.+++..+. ...|.++.+..+++||.|...+-
T Consensus 28 G~~vN~~L~~lla~~l~----------~~~~~~v~~~~~dygi~l~~~~~ 67 (187)
T PF08494_consen 28 GRRVNEALARLLAYRLS----------RRYGLSVSVSVDDYGIVLSLPEP 67 (187)
T ss_pred CHHHHHHHHHHHHHHHH----------HhcCCCeEEEEcCCEEEEEcCCC
Confidence 45567788777777665 34567788888999999999888
No 31
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=43.61 E-value=45 Score=23.09 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhc
Q 042270 192 PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 237 (287)
Q Consensus 192 ~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 237 (287)
.++|++++.++...++.... .+++++|++++......|+
T Consensus 40 ~~~t~eemie~~~~~~~~~~-------~~~~~~a~~~~~~~lp~Lk 78 (81)
T PF12674_consen 40 QDITMEEMIEFCVPFMDEFN-------GMTPEEARKMMPRYLPTLK 78 (81)
T ss_pred ecCCHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHccCCc
Confidence 36899999999998887633 3999999999877655443
No 32
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=41.87 E-value=57 Score=25.85 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHhh--hheeeEEEecC---------CChHHHHHHHHHH
Q 042270 194 LEAEDLAKFVPMMLS--RTFLECYIAGN---------IESNEAGSIIQYI 232 (287)
Q Consensus 194 it~edl~~f~~~~~~--~~~~~~lv~GN---------i~~~~a~~~~~~~ 232 (287)
-+++.+++|+..+-. ...+.++|+|| ++.++|.+.++.+
T Consensus 99 dSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesv 148 (218)
T KOG0088|consen 99 DSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESV 148 (218)
T ss_pred HHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhh
Confidence 357888899887653 56889999999 5566676665544
No 33
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.48 E-value=60 Score=28.23 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHhh---hheeeEEEecCCChHHHHHHHHH
Q 042270 191 LPHLEAEDLAKFVPMMLS---RTFLECYIAGNIESNEAGSIIQY 231 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~---~~~~~~lv~GNi~~~~a~~~~~~ 231 (287)
|++.+.+++++.++..-. +.++.+.+.|||+.+.+.++++.
T Consensus 208 LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~t 251 (278)
T PRK08385 208 LDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKL 251 (278)
T ss_pred ECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHc
Confidence 457788999888876643 24789999999999999998765
No 34
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=36.81 E-value=70 Score=21.46 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhcc--CCCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 042270 165 PYQLAMYYCSLILQ--DQTWPWTEELEVLPHLEAEDLAKFVPMM 206 (287)
Q Consensus 165 p~~~a~~~~~~ll~--~~~~~~~e~l~~L~~it~edl~~f~~~~ 206 (287)
...++...+..-.. ++..+...++++|..+...|+.+.++++
T Consensus 39 ~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~~~~d~~~~i~~~ 82 (83)
T PF00531_consen 39 LREQTYEMLQRWRQREGPNATVDQLIQALRDIGRNDLAEKIEQM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHCCcHHHHHHHHhh
Confidence 33444444443333 4678899999999999999998887765
No 35
>PRK14429 acylphosphatase; Provisional
Probab=36.12 E-value=70 Score=22.47 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=29.7
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQ 134 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~ 134 (287)
.|...|++=.+....+| +.+.+.|-.+++..++..+.+
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 24 KARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred HHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 35666777667777788 999999998888888777764
No 36
>PRK14425 acylphosphatase; Provisional
Probab=36.00 E-value=63 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=30.3
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQ 134 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~ 134 (287)
.|...|++=.+....+| +++.+.|-.+.+..++..+-+
T Consensus 28 ~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 28 EAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred HHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 35667777777777788 999999999998888887753
No 37
>PRK14420 acylphosphatase; Provisional
Probab=35.73 E-value=73 Score=22.37 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=28.9
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQK 135 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~~ 135 (287)
|...|++=.+....+| +.+.+.|-.+.+..++..+-+.
T Consensus 25 A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 25 ADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEKG 63 (91)
T ss_pred HHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 5556676667777788 9999999888887777777654
No 38
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=35.36 E-value=1.3e+02 Score=24.49 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhhhhhcceEE--EEeeeCceEEEE-EeecCccH
Q 042270 71 SSSPESEVLTDIFTRLLHDYLN----EYAYYAQVAGLYY--GINHTEGGFEVT-VVGYNHKL 125 (287)
Q Consensus 71 ~~~~~~~~l~~l~~~ll~~~l~----e~~y~a~~agl~~--~~~~~~~gi~i~-v~G~s~k~ 125 (287)
.++.+..+++..+..+++..+. -+.|.-++.|..| .+...++++.|+ .-|||+..
T Consensus 59 ~~~kk~~al~Gt~rslI~NMI~GVt~GF~k~L~ivgvgyp~ra~v~g~~l~l~N~LG~sh~~ 120 (189)
T PTZ00179 59 FGSKIPNSTINTALSHVRNMITGVTKGFRFKVRFAYAHFPISVSVENQLVEIRNFLGEKRVR 120 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcCCEEEEEEEEEeCcceEEEEcCCEEEEEecCCCCccE
Confidence 3456667888899899888664 3667777788887 776666777776 68998643
No 39
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=34.92 E-value=78 Score=27.82 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHH
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 231 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 231 (287)
|++.+.+++++.++.. +.++.+-+.|||+.+.+.+++..
T Consensus 234 LDn~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~t 272 (296)
T PRK09016 234 LDNFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAET 272 (296)
T ss_pred eCCCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 4578899999998844 33788999999999999988755
No 40
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.75 E-value=82 Score=27.34 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHhh-hheeeEEEecCCChHHHHHHHHH
Q 042270 191 LPHLEAEDLAKFVPMMLS-RTFLECYIAGNIESNEAGSIIQY 231 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~-~~~~~~lv~GNi~~~~a~~~~~~ 231 (287)
|++.+++++++.++..-. ..++.+.+.|||+++.+.++++.
T Consensus 208 LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~ 249 (273)
T PRK05848 208 CDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKS 249 (273)
T ss_pred ECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHc
Confidence 567899999999874321 24678999999999999988654
No 41
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=34.15 E-value=88 Score=25.57 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=51.4
Q ss_pred HHHHHHHHhccCCCCC---HHHHHhhCC--CCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhc
Q 042270 168 LAMYYCSLILQDQTWP---WTEELEVLP--HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 237 (287)
Q Consensus 168 ~a~~~~~~ll~~~~~~---~~e~l~~L~--~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 237 (287)
.+.......+..+.|+ .+|...++. -|+.+++.++.++ .+..+++.+.|.--+++.+++++.+...-.
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 3444445555566665 688877775 5899999999874 677899999999999999999888765443
No 42
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.65 E-value=83 Score=27.55 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhc
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 237 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 237 (287)
|++++.+++++.++.. . .++.+-+.|||+.+.+.+++..=.+.+.
T Consensus 223 LDnmspe~l~~av~~~-~-~~~~leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 223 LDNMSLEQIEQAITLI-A-GRSRIECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred ECCCCHHHHHHHHHHh-c-CceEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4578899999988744 3 3688999999999999998765334443
No 43
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.31 E-value=84 Score=27.59 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHh
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 236 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 236 (287)
|++.+.+++++.++.. +.++.+-+.|||+.+.+.+++..=.+.+
T Consensus 231 LDnmspe~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 231 LDNFTLDMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred ECCCCHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 3478899999988754 2368899999999999998876533333
No 44
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=33.15 E-value=2.5e+02 Score=22.44 Aligned_cols=52 Identities=17% Similarity=0.339 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhhhhhcceEEEEeeeCceEEEEEeecCcc
Q 042270 72 SSPESEVLTDIFTRLLHDYLN----EYAYYAQVAGLYYGINHTEGGFEVTVVGYNHK 124 (287)
Q Consensus 72 ~~~~~~~l~~l~~~ll~~~l~----e~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k 124 (287)
.+.+..++...+..+++.++. -..|.-.+.|..|.+...++.+.+ .-|||+.
T Consensus 56 ~~kk~~a~~gt~~s~i~Nmi~GVt~Gf~~~L~lvGvgyrv~~~g~~l~l-~LG~sh~ 111 (175)
T TIGR03654 56 DSKEARALHGTTRALINNMVIGVSEGFEKKLEIVGVGYRAQLQGKKLNL-SLGYSHP 111 (175)
T ss_pred CCHHHHHHHHHHHHHHHHHhheeccCcEEEEEEEEEEEEEEEeCCeEEE-EecCcee
Confidence 456667888888888888765 366667788888888877777777 7788864
No 45
>PRK14430 acylphosphatase; Provisional
Probab=32.68 E-value=73 Score=22.54 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=28.2
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETI 132 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i 132 (287)
.|...|+.=.+....+| +++.+.|-.+.+..++..+
T Consensus 26 ~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 26 AADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred HHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 45666776666666777 9999999999988887777
No 46
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=32.33 E-value=69 Score=22.42 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.4
Q ss_pred hCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHH
Q 042270 190 VLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYI 232 (287)
Q Consensus 190 ~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~ 232 (287)
-|.++|.++|..|.++|=-+ +++++|..+++.+
T Consensus 11 Kln~iT~~eLlkyskqy~i~----------it~~QA~~I~~~l 43 (85)
T PF11116_consen 11 KLNNITAKELLKYSKQYNIS----------ITKKQAEQIANIL 43 (85)
T ss_pred HHhcCCHHHHHHHHHHhCCC----------CCHHHHHHHHHHH
Confidence 56789999999998887333 6888888776553
No 47
>PRK14449 acylphosphatase; Provisional
Probab=32.17 E-value=88 Score=21.97 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=28.6
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQK 135 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~~ 135 (287)
|...|++=.+....+| +.+.+.|-.+.+..++..+.+.
T Consensus 26 A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~~ 64 (90)
T PRK14449 26 AVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKTG 64 (90)
T ss_pred HHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 4556666567777777 9999999888888877777653
No 48
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=31.65 E-value=22 Score=21.57 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=20.7
Q ss_pred CHHHHHHHHHH-HhhhheeeEEEe-cCCChHHHHHHH
Q 042270 195 EAEDLAKFVPM-MLSRTFLECYIA-GNIESNEAGSII 229 (287)
Q Consensus 195 t~edl~~f~~~-~~~~~~~~~lv~-GNi~~~~a~~~~ 229 (287)
|+++++.|+.- .+.+..+..+|- |=||++|..+|.
T Consensus 5 ~~e~iK~~Y~~g~~t~e~v~~~V~~~~IT~eey~eIT 41 (45)
T TIGR01669 5 SFEKVKTYYLWGYYSNEDVNKFVEKKLITREQYKVIT 41 (45)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHhhcCccCHHHHHHHh
Confidence 56677666652 334444544444 677777777664
No 49
>PRK14440 acylphosphatase; Provisional
Probab=31.37 E-value=81 Score=22.18 Aligned_cols=36 Identities=33% Similarity=0.345 Sum_probs=27.6
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|++=.+....+| +++.+.|-.+++..++..+-
T Consensus 26 A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 62 (90)
T PRK14440 26 AIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 62 (90)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 5566776566766777 99999998888888777665
No 50
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=31.08 E-value=92 Score=27.04 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHh
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 236 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 236 (287)
|.+.+.+++++.++.+-.+.++..-+.|||+.+.+..+...=.+.+
T Consensus 214 LDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 214 LDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred ecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 4578889999888876455688888999999999998875533333
No 51
>PRK14431 acylphosphatase; Provisional
Probab=31.07 E-value=84 Score=22.09 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=28.5
Q ss_pred hhhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQ 134 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~ 134 (287)
.|...|++=.+....+|+.+.+.|-.+.+..++..+.+
T Consensus 24 ~A~~~gl~G~V~N~~dgVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 24 IAMNYNIVGTVQNVDDYVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred HHhhcCCEEEEEECCCcEEEEEEcCHHHHHHHHHHHhc
Confidence 35566776556666679999999988888877777765
No 52
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.48 E-value=1.1e+02 Score=26.81 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHh-hhheeeEEEecCCChHHHHHHHHH
Q 042270 191 LPHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQY 231 (287)
Q Consensus 191 L~~it~edl~~f~~~~~-~~~~~~~lv~GNi~~~~a~~~~~~ 231 (287)
|++++.++++..++..- ...++.+.+.|+|+.+.+.+++..
T Consensus 225 LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~t 266 (289)
T PRK07896 225 LDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAET 266 (289)
T ss_pred eCCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 34788999998887542 245788999999999999988765
No 53
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=30.01 E-value=63 Score=29.84 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHhhhccc-ChHHHHHHHHHHhccCCCCCHHH-HHhhCCCCCHHHHHHH--HHHHhh--hheeeEEE
Q 042270 143 PDRFSVIKEMVTKEYHNNKFL-QPYQLAMYYCSLILQDQTWPWTE-ELEVLPHLEAEDLAKF--VPMMLS--RTFLECYI 216 (287)
Q Consensus 143 ~~~F~~~k~~~~~~~~n~~~~-~p~~~a~~~~~~ll~~~~~~~~e-~l~~L~~it~edl~~f--~~~~~~--~~~~~~lv 216 (287)
+++|..+|++++.+..+...- .........+..-+.. ..+ --+.+..|+++|+.+= .+.+.. +.+-.++|
T Consensus 4 p~rf~~lK~~L~~~~~~~~~v~~sw~rll~~l~~~~~~----i~~~G~~~IP~i~f~di~~~~~~~~~~~~ir~rG~~VI 79 (416)
T PF07350_consen 4 PARFAELKRSLIAKPGNEEAVFASWERLLEALEREIEE----IAAKGSSIIPEIDFADIENGGVSEEFLAEIRRRGCVVI 79 (416)
T ss_dssp -HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----HHHCT--SS-EEEHHHHHCT---HHHHHHHHHHSEEEE
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCCceeeHHHHhCCCCCHHHHHHHHhcCEEEE
Confidence 578999999999776654210 0122222211111110 000 0135566777777543 344332 23567888
Q ss_pred ecCCChHHHHHHHHHHHHHhcCCC
Q 042270 217 AGNIESNEAGSIIQYIEDVFFKGS 240 (287)
Q Consensus 217 ~GNi~~~~a~~~~~~~~~~l~~~~ 240 (287)
-|-|.+++|.+..+.+.+.+..+.
T Consensus 80 R~Vvp~~ea~~w~~e~~~Y~~~n~ 103 (416)
T PF07350_consen 80 RGVVPREEALAWKQELKEYLKANP 103 (416)
T ss_dssp CTSS-HHHHHHHHHHHHHHHHHT-
T ss_pred eCCCCHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999887654
No 54
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.50 E-value=96 Score=27.06 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHh
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVF 236 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 236 (287)
|++.+.+++++.+...- ....+-+.|||+.+.+.++++.=.+.+
T Consensus 219 LDn~s~e~l~~av~~~~--~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 219 LDNFSLDDLREGVELVD--GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred ECCCCHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 45788999999888543 345899999999999999876533333
No 55
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=29.47 E-value=58 Score=19.30 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHhhhheeeEEEecC
Q 042270 193 HLEAEDLAKFVPMMLSRTFLECYIAGN 219 (287)
Q Consensus 193 ~it~edl~~f~~~~~~~~~~~~lv~GN 219 (287)
..+.+++..|++.+ ++ .--++|+|.
T Consensus 17 Had~~~L~~~i~~~-~p-~~vilVHGe 41 (43)
T PF07521_consen 17 HADREELLEFIEQL-NP-RKVILVHGE 41 (43)
T ss_dssp S-BHHHHHHHHHHH-CS-SEEEEESSE
T ss_pred CCCHHHHHHHHHhc-CC-CEEEEecCC
Confidence 35689999999998 55 777888885
No 56
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=28.92 E-value=1.2e+02 Score=26.41 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHh-hhheeeEEEecCCChHHHHHHHHH
Q 042270 192 PHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQY 231 (287)
Q Consensus 192 ~~it~edl~~f~~~~~-~~~~~~~lv~GNi~~~~a~~~~~~ 231 (287)
++.+.+++++.++..- ...++.+-+.|+|+.+.+.++...
T Consensus 215 Dn~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~ 255 (277)
T TIGR01334 215 DKFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEA 255 (277)
T ss_pred CCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 4788888888887653 245788999999999999988655
No 57
>PRK14435 acylphosphatase; Provisional
Probab=28.81 E-value=1e+02 Score=21.69 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=27.7
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
.|...|++=.+....+| +++.+.|-.+++..++..+.
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 61 (90)
T PRK14435 24 VAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVA 61 (90)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 35556676566666677 99999998888888777775
No 58
>PRK14445 acylphosphatase; Provisional
Probab=28.57 E-value=1e+02 Score=21.66 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=28.9
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
.|...|++=.+....+| +.+.+.|=.+++..++..+.
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 26 AASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred HHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 35667777677777788 99999998888877777775
No 59
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=28.39 E-value=3.1e+02 Score=21.98 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhhhhhcceEEEEeeeCceEEEEEeecCcc
Q 042270 72 SSPESEVLTDIFTRLLHDYLN----EYAYYAQVAGLYYGINHTEGGFEVTVVGYNHK 124 (287)
Q Consensus 72 ~~~~~~~l~~l~~~ll~~~l~----e~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k 124 (287)
.+.+..++...+..+++..+. -+.|.-.+.|..|.+...++.+.+ .-|||+-
T Consensus 57 ~~k~~~a~~gt~~s~I~Nmi~GVt~Gf~~~L~lvGvgyrv~~~g~~l~l-~LG~sh~ 112 (178)
T PRK05498 57 DSKKARALHGTTRALINNMVVGVTEGFEKKLEIVGVGYRAQVKGKKLNL-SLGYSHP 112 (178)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEEeEEEEEEEeCCeEEE-EecCCEE
Confidence 445567888888888888665 366667788888888777777777 6788864
No 60
>PRK14444 acylphosphatase; Provisional
Probab=27.97 E-value=98 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=28.7
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
.|...|++=.+....+| +++.+.|-.+++..++..+-
T Consensus 26 ~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (92)
T PRK14444 26 RAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCY 63 (92)
T ss_pred HHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHH
Confidence 35566776667777788 99999999988888877765
No 61
>PRK14451 acylphosphatase; Provisional
Probab=27.73 E-value=1.1e+02 Score=21.51 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=28.8
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
.|...|++=.+....+| +++.+.|-.+++..++..+.
T Consensus 25 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 25 LAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 35666777677777788 99999998888877777765
No 62
>PRK14436 acylphosphatase; Provisional
Probab=27.45 E-value=1e+02 Score=21.68 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=27.9
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|++=.+....+| +.+.+.|-.+++..++..+-
T Consensus 27 A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14436 27 ARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_pred HHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHh
Confidence 4556676666767788 99999998888888877665
No 63
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=26.47 E-value=2e+02 Score=19.11 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhc
Q 042270 194 LEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 237 (287)
Q Consensus 194 it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 237 (287)
-+++|.....+.+.++ ++.++=..+++.++|..+++.+.+...
T Consensus 7 ~~~~D~~~i~~~l~~g-~~Vivnl~~l~~~~~~Ri~Dfl~G~~~ 49 (73)
T PF04472_consen 7 KSFEDAREIVDALREG-KIVIVNLENLDDEEAQRILDFLSGAVY 49 (73)
T ss_dssp SSGGGHHHHHHHHHTT---EEEE-TTS-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-CEEEEECCCCCHHHHHHHHHHHhchhe
Confidence 3678888866665544 777888999999999999888776654
No 64
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=26.21 E-value=1.3e+02 Score=20.93 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=26.7
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQK 135 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~~ 135 (287)
|...|+.=.+....+| +.+.+.|-.+.+..+++.+-+.
T Consensus 27 A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~g 65 (91)
T PF00708_consen 27 ARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKKG 65 (91)
T ss_dssp HHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHHS
T ss_pred HHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHhC
Confidence 4555665557777788 9999999877887777776653
No 65
>PRK14427 acylphosphatase; Provisional
Probab=26.11 E-value=1.3e+02 Score=21.30 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=28.5
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQK 135 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~~ 135 (287)
|...|++=.+....+| +.+.+.|-.+++..++..+.+.
T Consensus 29 A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~~ 67 (94)
T PRK14427 29 AEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNSD 67 (94)
T ss_pred HHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhhC
Confidence 5556676666666777 9999999888887777777653
No 66
>PRK14424 acylphosphatase; Provisional
Probab=26.04 E-value=1.2e+02 Score=21.63 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=26.9
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +.|.+.|-.+.+..++..+-
T Consensus 30 A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 30 AHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred HHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 4555665556666677 99999999888888777774
No 67
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=25.97 E-value=3.5e+02 Score=21.73 Aligned_cols=52 Identities=15% Similarity=0.359 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh----hhhhhhhcceEEEEeeeCceEEEEEeecCcc
Q 042270 72 SSPESEVLTDIFTRLLHDYLNE----YAYYAQVAGLYYGINHTEGGFEVTVVGYNHK 124 (287)
Q Consensus 72 ~~~~~~~l~~l~~~ll~~~l~e----~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k 124 (287)
++.+..++...+..++++++.. +.|.-.+.|..|.+...++.+.+ .-|||+-
T Consensus 57 ~~k~~~a~~gt~~slI~Nmi~GVt~Gf~~~L~lvGvGyr~~~~g~~l~l-~LG~sh~ 112 (178)
T CHL00140 57 ESKKARALHGLYRTLINNMVIGVSEGFEKKLELQGVGYRAQVQGKDLIL-NLGYSHP 112 (178)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEEEEEEeCCcEEE-EecCCee
Confidence 4566677888888888886653 66667778888888777777777 7788864
No 68
>COG3411 Ferredoxin [Energy production and conversion]
Probab=25.65 E-value=91 Score=20.51 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=18.3
Q ss_pred eeeEEEecCCChHHHHHHHHHH
Q 042270 211 FLECYIAGNIESNEAGSIIQYI 232 (287)
Q Consensus 211 ~~~~lv~GNi~~~~a~~~~~~~ 232 (287)
+-+..-+++++++.|.++++..
T Consensus 23 YpegvWY~~V~p~~a~rIv~~h 44 (64)
T COG3411 23 YPEGVWYTRVDPEDARRIVQSH 44 (64)
T ss_pred ecCCeeEeccCHHHHHHHHHHH
Confidence 3456789999999999998875
No 69
>PRK14422 acylphosphatase; Provisional
Probab=25.58 E-value=1.3e+02 Score=21.32 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=28.8
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQK 135 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~~ 135 (287)
|...|+.=.+....+| +++.+.|-.+++..++..+.+.
T Consensus 29 A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~g 67 (93)
T PRK14422 29 ALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRGD 67 (93)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhC
Confidence 5556676666666778 9999999888888777777653
No 70
>PRK14428 acylphosphatase; Provisional
Probab=25.37 E-value=1.2e+02 Score=21.77 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=28.2
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +.+.+.|-.+.+..++..+.
T Consensus 31 A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~ 67 (97)
T PRK14428 31 ARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLA 67 (97)
T ss_pred HHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHh
Confidence 5566777667777777 99999998888877777775
No 71
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=25.35 E-value=3.5e+02 Score=21.57 Aligned_cols=54 Identities=6% Similarity=0.199 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhhhhhcceEE--EEeeeCceEEEE-EeecCccH
Q 042270 72 SSPESEVLTDIFTRLLHDYLN----EYAYYAQVAGLYY--GINHTEGGFEVT-VVGYNHKL 125 (287)
Q Consensus 72 ~~~~~~~l~~l~~~ll~~~l~----e~~y~a~~agl~~--~~~~~~~gi~i~-v~G~s~k~ 125 (287)
.+.+..++..++..+++..+. -+.+.-++.|..| .....++.+.++ .-|||+..
T Consensus 53 ~~k~~~a~~gt~rsli~NmI~GVt~Gf~~~LeivGvGy~~ra~~~g~~L~l~n~LG~Sh~i 113 (170)
T TIGR03653 53 ARKKDKAMVGTYRSHIKNMIKGVTEGFEYKMKVVYSHFPMQVKVEGNKVVIENFLGEKAPR 113 (170)
T ss_pred CCHHHHHHHHHHHHHHHhheeecccCeEEEEEEEeccccEEEEEcCCeEEEeeccccceeE
Confidence 456667888889999988654 3556667777777 555555555554 47888643
No 72
>PRK14446 acylphosphatase; Provisional
Probab=25.30 E-value=1.2e+02 Score=21.19 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=27.7
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
.|...|+.=.+....+| +.+.+.|=.+.+..++..+.
T Consensus 24 ~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~ 61 (88)
T PRK14446 24 RAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLW 61 (88)
T ss_pred HHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHh
Confidence 35667777777777888 99999997776666666554
No 73
>PRK14447 acylphosphatase; Provisional
Probab=25.17 E-value=1.3e+02 Score=21.35 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=28.1
Q ss_pred hhhcceEEEEeeeCce--EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG--FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g--i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +.+.+.|-.+++..++..+-
T Consensus 27 A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 27 ANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred HhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 5566776666666778 99999999888888888664
No 74
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=25.05 E-value=1.5e+02 Score=25.96 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHh-hhheeeEEEecCCChHHHHHHHHHHHHHh
Q 042270 192 PHLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQYIEDVF 236 (287)
Q Consensus 192 ~~it~edl~~f~~~~~-~~~~~~~lv~GNi~~~~a~~~~~~~~~~l 236 (287)
++.+.+++++.++..- ...++.+-+.|+|+.+.+.+++..=.+.+
T Consensus 216 Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~I 261 (284)
T PRK06096 216 DKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLF 261 (284)
T ss_pred CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4678888888877542 13578899999999999998876533333
No 75
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=25.00 E-value=23 Score=24.35 Aligned_cols=48 Identities=13% Similarity=0.322 Sum_probs=40.4
Q ss_pred CceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHh
Q 042270 111 EGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYH 158 (287)
Q Consensus 111 ~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~ 158 (287)
+..+.=++.+|.+++-.++..+-+.+...+.+++.|+.+.....|.++
T Consensus 25 drel~G~L~afD~HlNmvL~d~eetit~~e~~E~~~e~~~k~~~r~~e 72 (91)
T KOG3460|consen 25 DRELRGTLHAFDEHLNMVLGDVEETITTVEIDEDTYEEIVKTTKRTVE 72 (91)
T ss_pred ChhhhcchhhhHHhhhhhhhhhhheEEEeeccchhHHHHHhhhhccee
Confidence 446777899999999999999999999999999999888776666544
No 76
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.91 E-value=1.6e+02 Score=25.85 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHhh-hheeeEEEecCCChHHHHHHHHH
Q 042270 192 PHLEAEDLAKFVPMMLS-RTFLECYIAGNIESNEAGSIIQY 231 (287)
Q Consensus 192 ~~it~edl~~f~~~~~~-~~~~~~lv~GNi~~~~a~~~~~~ 231 (287)
...+.+++++.++..-. ..++.+.+.|+|+.+.+.+++..
T Consensus 223 Dn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~t 263 (288)
T PRK07428 223 DNMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAET 263 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHc
Confidence 47788999888875422 45788999999999999888644
No 77
>PRK14448 acylphosphatase; Provisional
Probab=24.89 E-value=1.3e+02 Score=21.19 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=27.0
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|++=.+....+| +++.+.|-.+.+..+++.+.
T Consensus 25 A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 25 ATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred HHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 4455665555666677 99999999888888877774
No 78
>PRK14438 acylphosphatase; Provisional
Probab=24.84 E-value=1.3e+02 Score=21.12 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=27.4
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +.+.+.|-.+++..++..+-
T Consensus 26 A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (91)
T PRK14438 26 AQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCH 62 (91)
T ss_pred HHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 4556676666667778 99999998888877777764
No 79
>PRK14423 acylphosphatase; Provisional
Probab=24.28 E-value=1.4e+02 Score=21.10 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=26.2
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +++.+.|-.+++..++..+-
T Consensus 28 A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 64 (92)
T PRK14423 28 ARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCH 64 (92)
T ss_pred HHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 4556666666666778 99999998777776666665
No 80
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.02 E-value=1.4e+02 Score=26.05 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHH
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 231 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 231 (287)
|++.+.+++++.++.. . ....+.+.|+|+.+.+.+++..
T Consensus 220 LDn~s~e~l~~av~~~-~-~~~~leaSGGI~~~ni~~yA~t 258 (281)
T PRK06106 220 LDNMTPDTLREAVAIV-A-GRAITEASGRITPETAPAIAAS 258 (281)
T ss_pred eCCCCHHHHHHHHHHh-C-CCceEEEECCCCHHHHHHHHhc
Confidence 3578899999998844 3 2345899999999999988755
No 81
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=23.94 E-value=3.9e+02 Score=21.57 Aligned_cols=54 Identities=6% Similarity=0.220 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh----hhhhhhhhcceEE--EEeeeCceEEEE-EeecCcc
Q 042270 71 SSSPESEVLTDIFTRLLHDYLN----EYAYYAQVAGLYY--GINHTEGGFEVT-VVGYNHK 124 (287)
Q Consensus 71 ~~~~~~~~l~~l~~~ll~~~l~----e~~y~a~~agl~~--~~~~~~~gi~i~-v~G~s~k 124 (287)
.++.+..++..++..+++..+. -+.+.-++.|..| .....++++.++ .-|||+.
T Consensus 58 ~~~kk~ra~~gt~rslI~NmI~GVt~Gf~~~LelvGvGypira~~~g~~l~l~n~LG~Sh~ 118 (180)
T PRK05518 58 FARKKTKAMVGTFASHIKNMIKGVTEGFEYKLKIVYSHFPMQVKVQGNEVVIENFLGEKSP 118 (180)
T ss_pred CCCHHHHHHHHHHHHHHHhhheecccceEEEEEEEecCccEEEEEcCCEEEEEecccccee
Confidence 3566778888999999988764 3556667777777 555555566554 5788864
No 82
>PRK14442 acylphosphatase; Provisional
Probab=22.90 E-value=1.4e+02 Score=20.96 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=28.6
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
.|...|++=.+....+| +.+.+.|=.+.+..++..+-
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14442 26 EADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLG 63 (91)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 35667777777777788 99999998877777776664
No 83
>PRK14426 acylphosphatase; Provisional
Probab=22.24 E-value=1.5e+02 Score=20.82 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=27.3
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQ 134 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~ 134 (287)
.|...|+.=.+....+| +++.+.|-.+++..++..+-+
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 26 EALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred HHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 35556665556655666 999999988888777776654
No 84
>PRK14443 acylphosphatase; Provisional
Probab=22.12 E-value=1.5e+02 Score=21.09 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=27.1
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQ 134 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~ 134 (287)
|...|++=.+....+| +++.+.|-.+.+..+++.+.+
T Consensus 27 A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 27 AYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred HHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 5556676666665666 999999988887777776655
No 85
>PRK14452 acylphosphatase; Provisional
Probab=21.55 E-value=1.4e+02 Score=21.79 Aligned_cols=36 Identities=25% Similarity=0.092 Sum_probs=27.1
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETI 132 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i 132 (287)
.|...|++=.+....+| +++.+.|-.+.+..+...+
T Consensus 42 ~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l 78 (107)
T PRK14452 42 RALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWC 78 (107)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHH
Confidence 35667777777777788 9999999988877774433
No 86
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=21.40 E-value=3.6e+02 Score=20.48 Aligned_cols=100 Identities=16% Similarity=0.247 Sum_probs=60.3
Q ss_pred eEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCCHHHHHhhCC
Q 042270 113 GFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLP 192 (287)
Q Consensus 113 gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~L~ 192 (287)
.-.+.|..++. |.-+..+++.... ...+-+.+|.++.+.+.+-+. ..|.+.+ ++-|+..+.+..|
T Consensus 26 ~~~~~vd~~~p--P~el~~iLe~y~~---~~~d~~~lr~~L~~YLD~IKm----~RAkY~l-----ENky~L~~tL~~L- 90 (132)
T PF09432_consen 26 VSEFVVDDWNP--PKELQSILEKYNT---PSTDTEELRAQLDRYLDDIKM----ERAKYSL-----ENKYSLQDTLNQL- 90 (132)
T ss_pred cceeeecCCCC--CHHHHHHHHHHcC---CCccHHHHHHHHHHHHHHHHH----HHHHHhh-----hhHHHHHHHHHHH-
Confidence 44566666654 3345556666655 445666777777777766643 2333332 3456666665553
Q ss_pred CCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHH
Q 042270 193 HLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIED 234 (287)
Q Consensus 193 ~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~ 234 (287)
| .++..|.+.| .+++++.+|| .+.-.+++++.+..
T Consensus 91 --t-kEVn~Wr~ew---d~iE~~mFGD-~pnSmkkMl~nves 125 (132)
T PF09432_consen 91 --T-KEVNYWRKEW---DNIEMLMFGD-GPNSMKKMLQNVES 125 (132)
T ss_pred --H-HHHHHHHHHH---HHHHHHHhcC-ChHHHHHHHHHHHH
Confidence 2 2566666655 4688999998 66777777777643
No 87
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=21.23 E-value=4.4e+02 Score=22.33 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCC-----------cChhHHHH
Q 042270 80 TDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFK-----------VQPDRFSV 148 (287)
Q Consensus 80 ~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~-----------~~~~~F~~ 148 (287)
++.|...+..-+.-+...|+.+|+...+. +.++=.|..+.+..++..+-+.+.+-. .++++-+.
T Consensus 41 ~~v~~~h~~rl~~~E~~Ra~~~Gl~~~va-----vGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~ev 115 (254)
T COG1099 41 AEVYLDHFRRLLGVEPERAEKAGLKLKVA-----VGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEV 115 (254)
T ss_pred HHHHHHHHHHHHccchhhHHhhCceeeEE-----eccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHH
Confidence 45555566666666778899999987764 456667888999999999999888543 35667777
Q ss_pred HHHHHHHH--Hhhh--cccChHHHHHHHHHHhccC-CCCCHHHHHhhCCCCCHHHHHHHHH-HHhhhheeeEEEecCCCh
Q 042270 149 IKEMVTKE--YHNN--KFLQPYQLAMYYCSLILQD-QTWPWTEELEVLPHLEAEDLAKFVP-MMLSRTFLECYIAGNIES 222 (287)
Q Consensus 149 ~k~~~~~~--~~n~--~~~~p~~~a~~~~~~ll~~-~~~~~~e~l~~L~~it~edl~~f~~-~~~~~~~~~~lv~GNi~~ 222 (287)
.++|+.-. +.-- ... |.+-=-.....++.- .....+..+-.++.++.|-+..-.. .|+-. +++-= |-++.
T Consensus 116 f~~QL~LA~e~dvPviVHT-Pr~nK~e~t~~ildi~~~~~l~~~lvvIDH~N~etv~~vld~e~~vG--lTvqP-gKlt~ 191 (254)
T COG1099 116 FREQLELARELDVPVIVHT-PRRNKKEATSKILDILIESGLKPSLVVIDHVNEETVDEVLDEEFYVG--LTVQP-GKLTV 191 (254)
T ss_pred HHHHHHHHHHcCCcEEEeC-CCCcchhHHHHHHHHHHHcCCChhheehhcccHHHHHHHHhccceEE--EEecC-CcCCH
Confidence 77665322 2110 111 322111122222210 0112233344555666665554443 23333 33332 99999
Q ss_pred HHHHHHHHHHH
Q 042270 223 NEAGSIIQYIE 233 (287)
Q Consensus 223 ~~a~~~~~~~~ 233 (287)
++|.+++.+.-
T Consensus 192 ~eAveIV~ey~ 202 (254)
T COG1099 192 EEAVEIVREYG 202 (254)
T ss_pred HHHHHHHHHhC
Confidence 99999997764
No 88
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=21.20 E-value=57 Score=21.66 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.6
Q ss_pred EecCCChHHHHHHHHH
Q 042270 216 IAGNIESNEAGSIIQY 231 (287)
Q Consensus 216 v~GNi~~~~a~~~~~~ 231 (287)
.+|+|++++|.+++..
T Consensus 2 ~~g~isr~~Ae~~L~~ 17 (77)
T PF00017_consen 2 FHGFISRQEAERLLMQ 17 (77)
T ss_dssp BEESSHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHh
Confidence 4799999999988755
No 89
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=21.09 E-value=1.6e+02 Score=25.97 Aligned_cols=131 Identities=16% Similarity=0.181 Sum_probs=83.4
Q ss_pred hhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHh--ccCC-----cChhHHHHHHHHHHHHHhhhcccC---h---
Q 042270 99 QVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKI--AQFK-----VQPDRFSVIKEMVTKEYHNNKFLQ---P--- 165 (287)
Q Consensus 99 ~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l--~~~~-----~~~~~F~~~k~~~~~~~~n~~~~~---p--- 165 (287)
...|+.=.+.....||.-+|+|..+.+..++..+...- .... -++..|.++|-++.+++=...... |
T Consensus 31 ~~~~vkGrillA~EGINgtvsG~~e~~~~~~~~l~a~~~f~~l~~K~s~~~~~pF~r~kVk~kkEIV~lg~~ddv~p~~~ 110 (308)
T COG1054 31 KALGVKGRILLAHEGINGTVSGSAEAIEAYMAWLRADPGFADLRFKISEADEKPFWRLKVKLKKEIVALGVEDDVDPLEN 110 (308)
T ss_pred HHcCceeEEEEccCCcceeEecCHHHHHHHHHHHHhCcccccceeeeccccCCCcceEEEeehhhheecCCCCCcCcccc
Confidence 34566666777788999999999999988887776543 2221 245679999988888876654332 2
Q ss_pred ---HHHHHHHHHHhccCCC---------C--CHHHHHhhC--CCCCHHHHHHHHHHHh---hhheeeEEEecCCChHHHH
Q 042270 166 ---YQLAMYYCSLILQDQT---------W--PWTEELEVL--PHLEAEDLAKFVPMML---SRTFLECYIAGNIESNEAG 226 (287)
Q Consensus 166 ---~~~a~~~~~~ll~~~~---------~--~~~e~l~~L--~~it~edl~~f~~~~~---~~~~~~~lv~GNi~~~~a~ 226 (287)
|-...++ ..++.++. | .....-.|+ +.-|+.+|-.++++.. ....+.++..|-|.-+.|.
T Consensus 111 vG~yl~p~~w-n~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGIRCEKas 189 (308)
T COG1054 111 VGTYLSPKDW-NELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGIRCEKAS 189 (308)
T ss_pred ccCccCHHHH-HHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCceeehhhH
Confidence 2222233 23333221 1 111122233 2456777777777654 4568999999999999998
Q ss_pred HHHH
Q 042270 227 SIIQ 230 (287)
Q Consensus 227 ~~~~ 230 (287)
.++.
T Consensus 190 ~~m~ 193 (308)
T COG1054 190 AWMK 193 (308)
T ss_pred HHHH
Confidence 8753
No 90
>PRK14434 acylphosphatase; Provisional
Probab=20.85 E-value=2e+02 Score=20.27 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=27.1
Q ss_pred hhhcc-eEEEEeeeCce-EEEEEeecC-ccHHHHHHHHHH
Q 042270 98 AQVAG-LYYGINHTEGG-FEVTVVGYN-HKLRILLETIFQ 134 (287)
Q Consensus 98 a~~ag-l~~~~~~~~~g-i~i~v~G~s-~k~~~ll~~i~~ 134 (287)
|...| +.=.+....+| +.+.+.|-. +.+..++..+.+
T Consensus 25 A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 25 ALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred HHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 55566 76666767788 999999976 477777766654
No 91
>PRK14433 acylphosphatase; Provisional
Probab=20.72 E-value=1.8e+02 Score=20.26 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=26.4
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|++=.+....+| +++.+.|=.+.+..+++.+.
T Consensus 24 A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 60 (87)
T PRK14433 24 ARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLR 60 (87)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 4555665556666778 99999998888777777664
No 92
>PRK14450 acylphosphatase; Provisional
Probab=20.66 E-value=1.8e+02 Score=20.42 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=26.8
Q ss_pred hhhcceEEEEeeeCce--EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG--FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g--i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +++.+.|-.+.+..++..+-
T Consensus 25 A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~ 62 (91)
T PRK14450 25 ATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR 62 (91)
T ss_pred HHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 5556665556666677 99999998888888777764
No 93
>PRK14421 acylphosphatase; Provisional
Probab=20.56 E-value=1.6e+02 Score=21.21 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=27.1
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +.+.+.|-.+.+..++..+.
T Consensus 27 A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 27 AEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred HHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 4555666566666778 99999998888877777664
No 94
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=20.52 E-value=2.2e+02 Score=19.31 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHh
Q 042270 125 LRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYH 158 (287)
Q Consensus 125 ~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~ 158 (287)
+..+++.+.+.+...++++++|..+.+-+.+-=+
T Consensus 8 ~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~ 41 (74)
T PF04444_consen 8 MARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQ 41 (74)
T ss_dssp HHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 3456666777777788999999999887766544
No 95
>PRK14441 acylphosphatase; Provisional
Probab=20.41 E-value=1.8e+02 Score=20.53 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=27.7
Q ss_pred hhhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 97 YAQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 97 ~a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
.|...|+.=.+....+| +.+.+.|-.+.+..++..+-
T Consensus 27 ~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 27 EARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred HHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 35666776666767778 99999998777777777663
Done!