Query 042270
Match_columns 287
No_of_seqs 148 out of 1080
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 100.0 7.9E-33 2.7E-37 275.9 31.1 267 8-287 472-741 (939)
2 3cww_A Insulysin, insulin-degr 100.0 3.2E-32 1.1E-36 273.0 31.0 282 2-287 484-767 (990)
3 3gwb_A Peptidase M16 inactive 99.8 1.7E-18 6E-23 157.7 21.6 201 35-239 14-224 (434)
4 3cx5_A Cytochrome B-C1 complex 99.8 1.3E-18 4.3E-23 158.4 16.1 191 36-231 2-199 (431)
5 3amj_B Zinc peptidase inactive 99.8 2E-18 7E-23 156.9 16.9 200 36-238 5-216 (424)
6 3d3y_A Uncharacterized protein 99.8 4E-17 1.4E-21 148.1 20.1 193 38-238 6-225 (425)
7 1pp9_B Ubiquinol-cytochrome C 99.8 1.4E-17 4.9E-22 151.9 16.8 197 35-237 24-227 (439)
8 1hr6_A Alpha-MPP, mitochondria 99.7 3E-16 1E-20 145.0 17.4 199 35-238 6-212 (475)
9 3eoq_A Putative zinc protease; 99.7 1.1E-15 3.7E-20 138.4 19.5 198 37-238 4-209 (406)
10 3hdi_A Processing protease; CA 99.7 1.7E-15 5.8E-20 137.6 18.8 199 37-239 4-210 (421)
11 3ami_A Zinc peptidase; alpha/b 99.6 4.9E-15 1.7E-19 135.6 18.2 202 36-239 8-217 (445)
12 1hr6_B Beta-MPP, mitochondrial 99.6 2.4E-14 8.4E-19 130.7 17.1 201 35-238 7-215 (443)
13 2fge_A Atprep2;, zinc metallop 99.6 2.4E-14 8.3E-19 143.5 16.1 216 17-238 534-786 (995)
14 1pp9_A Ubiquinol-cytochrome C 99.6 4.3E-14 1.5E-18 129.4 16.4 201 35-239 14-222 (446)
15 3go9_A Insulinase family prote 99.6 2.8E-14 9.6E-19 132.6 15.1 200 36-239 27-239 (492)
16 3cx5_B Cytochrome B-C1 complex 99.5 7.1E-14 2.4E-18 123.9 13.6 179 56-238 10-195 (352)
17 1q2l_A Protease III; hydrolase 99.4 3.9E-12 1.3E-16 126.7 16.1 201 36-239 22-235 (939)
18 3cww_A Insulysin, insulin-degr 99.3 2.4E-11 8E-16 121.8 15.1 226 11-239 9-252 (990)
19 3s5m_A Falcilysin; M16 metallo 99.1 2.5E-09 8.5E-14 108.1 15.8 197 35-238 87-327 (1193)
20 2fge_A Atprep2;, zinc metallop 99.0 7.2E-09 2.5E-13 103.9 14.6 193 37-237 40-260 (995)
21 3ih6_A Putative zinc protease; 98.7 4.9E-07 1.7E-11 73.0 15.0 161 56-219 22-193 (197)
22 3eoq_A Putative zinc protease; 98.4 1.1E-05 3.8E-10 72.3 15.8 161 57-221 234-405 (406)
23 3hdi_A Processing protease; CA 98.3 1.7E-05 5.9E-10 71.3 16.1 162 56-221 232-405 (421)
24 3gwb_A Peptidase M16 inactive 98.3 9.1E-06 3.1E-10 73.3 13.4 162 57-221 248-422 (434)
25 3amj_B Zinc peptidase inactive 98.3 1.7E-05 5.8E-10 71.3 14.7 163 57-222 241-416 (424)
26 3s5m_A Falcilysin; M16 metallo 98.2 3.6E-06 1.2E-10 85.3 10.2 188 42-234 725-952 (1193)
27 1pp9_B Ubiquinol-cytochrome C 98.2 8.8E-05 3E-09 66.9 18.5 162 56-221 250-431 (439)
28 3cx5_A Cytochrome B-C1 complex 98.2 3.3E-05 1.1E-09 69.5 15.6 107 114-221 302-414 (431)
29 1hr6_B Beta-MPP, mitochondrial 98.2 5.2E-05 1.8E-09 68.6 16.0 163 56-221 244-429 (443)
30 3ami_A Zinc peptidase; alpha/b 98.1 6.1E-05 2.1E-09 68.3 15.5 163 58-221 244-423 (445)
31 1pp9_A Ubiquinol-cytochrome C 98.1 6.8E-05 2.3E-09 68.0 15.7 107 114-221 320-429 (446)
32 3d3y_A Uncharacterized protein 98.1 4.8E-05 1.7E-09 68.2 14.2 160 56-219 252-421 (425)
33 1hr6_A Alpha-MPP, mitochondria 98.1 0.00011 3.8E-09 67.3 16.7 162 56-220 241-437 (475)
34 3go9_A Insulinase family prote 97.7 0.0018 6.2E-08 59.6 17.8 158 79-237 291-466 (492)
35 2dbn_A Hypothetical protein YB 48.8 77 0.0026 28.4 8.5 86 143-239 55-153 (461)
36 3cx5_B Cytochrome B-C1 complex 36.9 62 0.0021 27.1 6.0 109 77-221 234-344 (352)
37 1vq8_E 50S ribosomal protein L 34.7 63 0.0022 24.9 5.1 53 72-124 55-114 (178)
38 3gnn_A Nicotinate-nucleotide p 32.5 38 0.0013 28.6 3.7 39 191-231 235-273 (298)
39 2r9i_A Putative phage capsid p 28.1 44 0.0015 23.5 2.8 43 193-235 3-46 (141)
40 1zav_U 50S ribosomal protein L 27.3 25 0.00085 18.6 1.1 24 183-206 2-25 (30)
41 2fhm_A Probable acylphosphatas 25.7 79 0.0027 21.2 3.8 37 98-134 25-62 (91)
42 1dd4_C 50S ribosomal protein L 24.8 53 0.0018 18.5 2.3 30 184-213 3-32 (40)
43 1ulr_A Putative acylphosphatas 24.0 81 0.0028 21.0 3.6 36 98-133 25-61 (88)
44 3p04_A Uncharacterized BCR; SE 22.0 1.8E+02 0.0063 19.4 5.2 45 192-237 11-55 (87)
45 2bjd_A Acylphosphatase; hypert 21.8 97 0.0033 21.3 3.7 36 98-133 37-73 (101)
46 3l0g_A Nicotinate-nucleotide p 21.8 59 0.002 27.4 3.0 39 191-231 233-271 (300)
47 2vh7_A Acylphosphatase-1; hydr 21.4 1E+02 0.0034 21.0 3.7 36 98-133 31-67 (99)
48 1urr_A CG18505 protein; acylph 21.3 1E+02 0.0034 21.2 3.7 36 98-133 34-70 (102)
49 2zzd_B Thiocyanate hydrolase s 21.0 93 0.0032 23.5 3.6 74 167-240 70-146 (157)
50 1rl6_A Protein (ribosomal prot 20.2 2.9E+02 0.01 21.1 7.5 51 72-123 56-110 (177)
51 1w2i_A Acylphosphatase; hydrol 20.1 86 0.0029 21.0 3.1 35 98-132 27-62 (91)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=7.9e-33 Score=275.88 Aligned_cols=267 Identities=19% Similarity=0.333 Sum_probs=232.4
Q ss_pred CCCCCCCCCCCCCCCCccccCC-CCCCCCeEeecCCCceEEEeCCCccccc-ceEEEEEEeCCCCCCCHHHHHHHHHHHH
Q 042270 8 KENLHLPAPNVFVPTDLSLKDT-QEAKFPVLLRKSSYSTLWYKPDTMFSTP-KAFVNIYFNCPHASSSPESEVLTDIFTR 85 (287)
Q Consensus 8 ~~~l~LP~~N~fip~~f~~~~~-~~~~~P~~i~~~~~~~vw~~~d~~f~~P-k~~i~i~i~~~~~~~~~~~~~l~~l~~~ 85 (287)
...+++|.+|+|||++|++.+. .....|.++..++|++||+++++.|++| ++.|.+.+.+|....++.+.+++.|+..
T Consensus 472 ~~~~~~p~~n~~~~~~~~~~~~~~~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ 551 (939)
T 1q2l_A 472 DIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDY 551 (939)
T ss_dssp TCCCCCCCCCTTCCCCCCCCCCSSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHH
T ss_pred cccccCCCCCcCCCcCcccccCcCCCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHH
Confidence 4579999999999999998765 4456799999999999999999999886 9999999999988888999999999999
Q ss_pred HHHHhhhhhhhhhhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccCh
Q 042270 86 LLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQP 165 (287)
Q Consensus 86 ll~~~l~e~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p 165 (287)
++.+++.+..|.+.++|++++++. .+|+.++++|++++++.+++.+.+.+.+|.+++++|+++|++++++++|...+.|
T Consensus 552 ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p 630 (939)
T 1q2l_A 552 LAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKA 630 (939)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcCh
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999976669
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 042270 166 YQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGSNPICQ 245 (287)
Q Consensus 166 ~~~a~~~~~~ll~~~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~~~~~~ 245 (287)
..++...+..++++++|+..+.++.|+++|++|+.+|+++++++.+++++|+||+++++|+++++.+.+.++....
T Consensus 631 ~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~---- 706 (939)
T 1q2l_A 631 FEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGS---- 706 (939)
T ss_dssp HHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCS----
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCc----
Confidence 9999999999999888999999999999999999999999999999999999999999999999998888864321
Q ss_pred CCCCCCcCccceEEeCCCceEEEecCCCCCCCCCeEE-EEEEC
Q 042270 246 PLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCL-VHYIQ 287 (287)
Q Consensus 246 p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~ns~v-~~y~Q 287 (287)
.....+...++.|..+.+... .+ +.++++ ..|||
T Consensus 707 -----~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~ 741 (939)
T 1q2l_A 707 -----EWCRNKDVVVDKKQSVIFEKA--GN-STDSALAAVFVP 741 (939)
T ss_dssp -----CCCCCEEECCCSCEEEEEEEC--CS-SSCEEEEEEEEC
T ss_pred -----cccccceEEeCCCceEEEecC--CC-CCCceeEEEEEe
Confidence 111223334455555444443 22 345665 77775
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=3.2e-32 Score=272.95 Aligned_cols=282 Identities=35% Similarity=0.601 Sum_probs=239.7
Q ss_pred CccCCCCCCCCCCCCCCCCCCCccccCC--CCCCCCeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHH
Q 042270 2 WILSAPKENLHLPAPNVFVPTDLSLKDT--QEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVL 79 (287)
Q Consensus 2 w~~~~~~~~l~LP~~N~fip~~f~~~~~--~~~~~P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l 79 (287)
|.++...+++.+|++|+|||++|++.+. .....|.++...+|+++|++++++|++|++.+++.+.+|....+++..++
T Consensus 484 ~~~~~~~~~~~~p~~~~~ip~~~~~~~~~~~~~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~ 563 (990)
T 3cww_A 484 WQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNM 563 (990)
T ss_dssp HHTCCCCTTCCCCCCCTTCCCCCCCCCCCTTCCSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHH
T ss_pred hhcCCCCccccCCCCCCCCCcccccccCCCCCCCCCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHH
Confidence 4444444569999999999999998654 34557889999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhh
Q 042270 80 TDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHN 159 (287)
Q Consensus 80 ~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n 159 (287)
+.|++.++.+.+++..|.+.++|++++++.+.+|+.++++|++++++.+++.+.+.+.++.+++++|+++|+++++++++
T Consensus 564 ~~L~~~ll~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~ 643 (990)
T 3cww_A 564 AYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNN 643 (990)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHhCCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 160 NKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 160 ~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
...++|..+|...+..+++++.|...+.++.|+++|.+|+.+|+++++++.+++++|+||++++++.++.+.+.+.+..-
T Consensus 644 ~~~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l 723 (990)
T 3cww_A 644 FRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEH 723 (990)
T ss_dssp GGGSCHHHHHHHHHHHHHBSSCCCHHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhcc
Confidence 98856999999999999998889988899999999999999999999999999999999999999999976666555321
Q ss_pred CCCCCCCCCCCCcCccceEEeCCCceEEEecCCCCCCCCCeEEEEEEC
Q 042270 240 SNPICQPLFPSQHLTNRVVKLEKGKNYVYSNQGLNPSDENSCLVHYIQ 287 (287)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~ns~v~~y~Q 287 (287)
+. +.|.+..+.+..+.+.++.|..+++... ++++.|+++..|+|
T Consensus 724 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~ 767 (990)
T 3cww_A 724 AH--TKPLLPSQLAAYREVQLPDRGWFVYQQR--NEVHNNSGIEIYYQ 767 (990)
T ss_dssp HC--CEECCGGGCCCCCBBCCCTTEEEEEEEE--CSSCSSEEEEEEEE
T ss_pred CC--CCCCchhhccccceEEcCCCCeEEEEec--CCCCCCcEEEEEEe
Confidence 11 1111111222334556677776555432 44688999999875
No 3
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.81 E-value=1.7e-18 Score=157.73 Aligned_cols=201 Identities=11% Similarity=0.117 Sum_probs=173.0
Q ss_pred CeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh---hhhhhhc--ceEEEEee
Q 042270 35 PVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEY---AYYAQVA--GLYYGINH 109 (287)
Q Consensus 35 P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~---~y~a~~a--gl~~~~~~ 109 (287)
++....++|++||+++++. .|++.+.+.+..|...+ +...+++.++..++..++... .+...++ |.+++.+.
T Consensus 14 ~~~~~L~NGl~v~~~~~~~--~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t 90 (434)
T 3gwb_A 14 VQTWSTAEGAKVLFVEARE--LPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGA 90 (434)
T ss_dssp CEEEECTTCCEEEEEECCS--SSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEE
T ss_pred CEEEEcCCCeEEEEEECCC--CCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeee
Confidence 5677789999999999987 59999999999988766 677889999998887765432 2333333 77888888
Q ss_pred eCceEEEEEeecCcc--HHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--H
Q 042270 110 TEGGFEVTVVGYNHK--LRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTWP--W 184 (287)
Q Consensus 110 ~~~gi~i~v~G~s~k--~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~ 184 (287)
+.+++.+.++|++++ ++.+++.+.+.+.++.+++++|++.|+.+.+++++...+ |...+...+..++++ +.|. .
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
T 3gwb_A 91 YKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQN-PGKLASLELMKRLYGTHPYAHAS 169 (434)
T ss_dssp CSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTSTTSSCT
T ss_pred cCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcCCCCCCCCC
Confidence 889999999999999 999999999999999999999999999999999998554 999999988888875 3343 3
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 185 TEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 185 ~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
.+..+.|+++|.+|+++|+++++.+.++.++|+||++.+++.++++.....++..
T Consensus 170 ~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~ 224 (434)
T 3gwb_A 170 DGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKG 224 (434)
T ss_dssp TCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCC
Confidence 3467899999999999999999999999999999999999999999988888754
No 4
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.79 E-value=1.3e-18 Score=158.41 Aligned_cols=191 Identities=17% Similarity=0.113 Sum_probs=167.5
Q ss_pred eEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcceEEEEeeeCceEE
Q 042270 36 VLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINHTEGGFE 115 (287)
Q Consensus 36 ~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~~~gi~ 115 (287)
+....++|++||+++++. .|++.+.+.+..|...+++...+++.++..++..+... |.+...|.+++.+.+.+++.
T Consensus 2 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--~~~~~~G~~~na~t~~~~t~ 77 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPS--AHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--AVAAKEGLALSSNISRDFQS 77 (431)
T ss_dssp CCEEEESSSEEEEEECTT--CSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--HHHHHTTCEEEEEECSSCEE
T ss_pred eEEECCCCCEEEEEECCC--CCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--ccHHHcCCeeeeeecCCeEE
Confidence 345567999999999988 59999999999998888888899999999998777543 56788899999999899999
Q ss_pred EEEeecCccHHHHHHHHHHHhccCC---cChhHHHHHHHHHHHHHhhhcccCh-HHHHHHHHHHhccCC-C--CCHHHHH
Q 042270 116 VTVVGYNHKLRILLETIFQKIAQFK---VQPDRFSVIKEMVTKEYHNNKFLQP-YQLAMYYCSLILQDQ-T--WPWTEEL 188 (287)
Q Consensus 116 i~v~G~s~k~~~ll~~i~~~l~~~~---~~~~~F~~~k~~~~~~~~n~~~~~p-~~~a~~~~~~ll~~~-~--~~~~e~l 188 (287)
+.++|++++++.+++.+.+.+.++. +++++|++.|+.+++++++...+ | ...+...+...++++ . ++..+..
T Consensus 78 ~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (431)
T 3cx5_A 78 YIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDN-DHPNRVLEHLHSTAFQNTPLSLPTRGTL 156 (431)
T ss_dssp EEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTSGGGSCTTCCH
T ss_pred EEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcC-chhHHHHHHHHHHhcCCCCCCCCCCCCH
Confidence 9999999999999999999999999 99999999999999999986555 9 999998888888753 2 3444566
Q ss_pred hhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHH
Q 042270 189 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 231 (287)
Q Consensus 189 ~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 231 (287)
+.|+++|.+|+++|+++++.+.++.++|+||++.+++.++++.
T Consensus 157 ~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~ 199 (431)
T 3cx5_A 157 ESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIES 199 (431)
T ss_dssp HHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTT
T ss_pred HHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHH
Confidence 7788899999999999999999999999999999999888765
No 5
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.79 E-value=2e-18 Score=156.90 Aligned_cols=200 Identities=12% Similarity=0.101 Sum_probs=167.4
Q ss_pred eEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-------hhhhhhhhc--ceEEE
Q 042270 36 VLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLN-------EYAYYAQVA--GLYYG 106 (287)
Q Consensus 36 ~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~-------e~~y~a~~a--gl~~~ 106 (287)
.....++|++||+++++. .|++.+.+.+..|...++....+++.++..++..+.. ...+...++ |.+++
T Consensus 5 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~~ 82 (424)
T 3amj_B 5 EHWTAPSGAQVYYVENRT--LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLG 82 (424)
T ss_dssp EEEECTTSCEEEEEECCS--SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCcEEEEEECCC--CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEEE
Confidence 456678999999999987 6899999999999887777788999999999877433 233444443 67888
Q ss_pred EeeeCceEEEEEeecCccH--HHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC
Q 042270 107 INHTEGGFEVTVVGYNHKL--RILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTWP 183 (287)
Q Consensus 107 ~~~~~~gi~i~v~G~s~k~--~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~ 183 (287)
...+.+++.+.++|+++++ +.+++.+.+.+.+|.+++++|++.|+.+++++++...+ |...+...+...+++ +.|.
T Consensus 83 a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 83 GGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQ-PGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHTTSGGG
T ss_pred eecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHhcCCCCCCC
Confidence 8888889999999999998 99999999999999999999999999999999987554 999999988888875 3332
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcC
Q 042270 184 WTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 238 (287)
Q Consensus 184 ~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 238 (287)
.....+.|+++|.+++++|+++++.+.++.++|+||++.+++.++++.....++.
T Consensus 162 ~~~~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~ 216 (424)
T 3amj_B 162 HVSSVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPA 216 (424)
T ss_dssp CCCCHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCC
T ss_pred CCCCHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCC
Confidence 1114566677999999999999999999999999999999999998776666653
No 6
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.76 E-value=4e-17 Score=148.11 Aligned_cols=193 Identities=15% Similarity=0.148 Sum_probs=159.3
Q ss_pred eecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh----hhhhhhc---ceEEEEeee
Q 042270 38 LRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEY----AYYAQVA---GLYYGINHT 110 (287)
Q Consensus 38 i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~----~y~a~~a---gl~~~~~~~ 110 (287)
+..++|++||+++++. .|++.+.+.+..|...++ .+++.++..++..+.... .+...++ |.+++.+.+
T Consensus 6 ~~L~nG~~v~~~~~~~--~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~ 80 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEK--YKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVS 80 (425)
T ss_dssp EEEETTEEEEEEECSS--CSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEE
T ss_pred eeccCCcEEEEEecCc--cceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeee
Confidence 4567899999999988 499999999998875443 578899999988776543 3445555 777777665
Q ss_pred Cce----EEEEEeecCc-------cHHHHHHHHHHHhccCC-----cChhHHHHHHHHHHHHHhhhcccChHHHHHHHHH
Q 042270 111 EGG----FEVTVVGYNH-------KLRILLETIFQKIAQFK-----VQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCS 174 (287)
Q Consensus 111 ~~g----i~i~v~G~s~-------k~~~ll~~i~~~l~~~~-----~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~ 174 (287)
.++ +.+.++|+++ +++.+++.+.+.+.+|. +++++|++.|+.+.+++++...+ |...+...+.
T Consensus 81 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~ 159 (425)
T 3d3y_A 81 KKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVED-KQTYASLALQ 159 (425)
T ss_dssp EETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred ecCceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHH
Confidence 555 8999999998 69999999999999999 99999999999999999987555 9999999888
Q ss_pred Hhcc-C-CCCC--HHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcC
Q 042270 175 LILQ-D-QTWP--WTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 238 (287)
Q Consensus 175 ~ll~-~-~~~~--~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 238 (287)
..++ + +.+. .....+.|+.+|.+|+++|+++++.+.++.++|+||++.+++.+++ .... ++.
T Consensus 160 ~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~ 225 (425)
T 3d3y_A 160 SVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTP 225 (425)
T ss_dssp HHHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCC
T ss_pred HHhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCc
Confidence 8888 4 3333 4445677778999999999999999999999999999999999988 6555 553
No 7
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.76 E-value=1.4e-17 Score=151.90 Aligned_cols=197 Identities=7% Similarity=-0.007 Sum_probs=168.4
Q ss_pred CeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhhhhhcceEEEEee
Q 042270 35 PVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLN-----EYAYYAQVAGLYYGINH 109 (287)
Q Consensus 35 P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~ 109 (287)
......++|++||++++ . .|++.+.+.+..|....+....+++.++..++..+.. +........|.+++...
T Consensus 24 ~~~~~L~nGl~v~~~~~-~--~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t 100 (439)
T 1pp9_B 24 LEFTRLPNGLVIASLEN-Y--APASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTS 100 (439)
T ss_dssp CEEEECTTSCEEEEECC-C--CSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCcEEEEEeC-C--CceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEe
Confidence 34566789999999998 5 7999999999999887777788999999888865532 33344455688888888
Q ss_pred eCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCC--CCHHHH
Q 042270 110 TEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQT--WPWTEE 187 (287)
Q Consensus 110 ~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~--~~~~e~ 187 (287)
+.+++.+.++|++++++.+++.+.+.+.++.+++++|++.|+.+++++++...+ |...+...+...++++. ++....
T Consensus 101 ~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~ 179 (439)
T 1pp9_B 101 TRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQN-PQAHVIENLHAAAYRNALANSLYCP 179 (439)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHBSSGGGSCSSCC
T ss_pred cceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHhcCCCCCCccCC
Confidence 889999999999999999999999999999999999999999999999986555 99999988888887632 334456
Q ss_pred HhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhc
Q 042270 188 LEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 237 (287)
Q Consensus 188 l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 237 (287)
.+.|+++|.+|+++|+++++.+.++.++|+|| +.+++.++++.+.+ ++
T Consensus 180 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~ 227 (439)
T 1pp9_B 180 DYRIGKVTPVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IR 227 (439)
T ss_dssp GGGTTTCCHHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CC
T ss_pred HHHHhhcCHHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CC
Confidence 78899999999999999999999999999999 99999999877655 54
No 8
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.70 E-value=3e-16 Score=145.02 Aligned_cols=199 Identities=11% Similarity=0.033 Sum_probs=170.0
Q ss_pred CeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhhhhhcceEEEEee
Q 042270 35 PVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLN-----EYAYYAQVAGLYYGINH 109 (287)
Q Consensus 35 P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~agl~~~~~~ 109 (287)
......++|++||+.++. .|++.+.+.+..+...+++...+++.++..|+..+.. +.....+..|.+++.+.
T Consensus 6 ~~~~~L~NGl~v~~~~~~---~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t 82 (475)
T 1hr6_A 6 FKLSSLANGLKVATSNTP---GHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTS 82 (475)
T ss_dssp CEEEECTTSCEEEEESCC---CSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEE
T ss_pred ceEEECCCCCEEEEEeCC---CCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence 345667899999998643 5999999999999887888889999999888876532 44445566788888888
Q ss_pred eCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-C--CCHHH
Q 042270 110 TEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ-T--WPWTE 186 (287)
Q Consensus 110 ~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~--~~~~e 186 (287)
+.+++.+.+++++++++.++..+.+.+.++.+++++|++.|+.+++++++...+ |...+.+.+...++++ . ++...
T Consensus 83 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~G 161 (475)
T 1hr6_A 83 SRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMK-PELVLPELLHTAAYSGETLGSPLIC 161 (475)
T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSC
T ss_pred ccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 889999999999999999999999999999999999999999999999996554 9999999999888863 2 33345
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcC
Q 042270 187 ELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 238 (287)
Q Consensus 187 ~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 238 (287)
..+.|+++|.+|+++|+++++.+.++.++|+| ++.+++.++++.....++.
T Consensus 162 ~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~ 212 (475)
T 1hr6_A 162 PRGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQS 212 (475)
T ss_dssp CGGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCC
T ss_pred CHHHHhhcCHHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCC
Confidence 66888999999999999999999999999999 9999999999887766653
No 9
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.70 E-value=1.1e-15 Score=138.38 Aligned_cols=198 Identities=8% Similarity=0.002 Sum_probs=167.3
Q ss_pred EeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhhhhhcceEEEEeeeC
Q 042270 37 LLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNE-----YAYYAQVAGLYYGINHTE 111 (287)
Q Consensus 37 ~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~agl~~~~~~~~ 111 (287)
....++|++|+..+++. .|.+.+.+.+..|...++....+++.++..++-.+... ..-..+..|.+++...+.
T Consensus 4 ~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 4 EAELRNGLRVIAEVVPG--ARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEECTTSCEEEEEECTT--CSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred eEEcCCCCEEEEEECCC--CCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 34567999999999988 69999999999998888888899999999988765432 222223457788888888
Q ss_pred ceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-CC--CHHHHH
Q 042270 112 GGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ-TW--PWTEEL 188 (287)
Q Consensus 112 ~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~--~~~e~l 188 (287)
+...+.+++.+++++.++..+.+.+ +|.+++++|++.|..++.+++....+ |...+...+...++++ .| +.....
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~ 159 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDR-PGFMAYEWARARFFQGHPLGNSVLGTR 159 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTTCGGGCCSSCCH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 8999999999999999999999999 99999999999999999999988655 9999999888888863 33 233345
Q ss_pred hhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcC
Q 042270 189 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 238 (287)
Q Consensus 189 ~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 238 (287)
+.|+.+|.+|+++|+++++.+.++.++|+||++.+++.++++.....++.
T Consensus 160 ~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 209 (406)
T 3eoq_A 160 ESITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPE 209 (406)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCC
T ss_pred HHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 66677899999999999999999999999999999999999887766664
No 10
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.68 E-value=1.7e-15 Score=137.60 Aligned_cols=199 Identities=11% Similarity=0.062 Sum_probs=166.4
Q ss_pred EeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh-----hhhhhhcceEEEEeeeC
Q 042270 37 LLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEY-----AYYAQVAGLYYGINHTE 111 (287)
Q Consensus 37 ~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~-----~y~a~~agl~~~~~~~~ 111 (287)
....++|++|++.+++. .|.+.+.+.+..+...++....+++.++..++..+.... .-.....|.+++...+.
T Consensus 4 ~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 4 TMTLDNGVRIITEKMST--VRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp EEECTTSCEEEEEECTT--CSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred EEEcCCCCEEEEEECCC--CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 34567999999999987 699999999999988888888999999988887654332 12223447777887778
Q ss_pred ceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-CC--CHHHHH
Q 042270 112 GGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ-TW--PWTEEL 188 (287)
Q Consensus 112 ~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~--~~~e~l 188 (287)
+...+.+++.+++++.++..+.+.+.++.+++++|++.|+.++.+++....+ |...+...+...++++ .+ +.-...
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~ 160 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDT-PDDIVHDLLSSATYGKHSLGYPILGTV 160 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTSGGGSCTTCCH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 8899999999999999999999999999999999999999999999997655 9999999888888863 22 233345
Q ss_pred hhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 189 EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 189 ~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
+.|+++|.+|+++|+++++.+.++.+.|+||++ +++.++++.....++..
T Consensus 161 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~ 210 (421)
T 3hdi_A 161 ETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPT 210 (421)
T ss_dssp HHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCC
T ss_pred HHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCC
Confidence 666778999999999999999999999999999 99999988777666543
No 11
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.65 E-value=4.9e-15 Score=135.62 Aligned_cols=202 Identities=7% Similarity=0.027 Sum_probs=163.7
Q ss_pred eEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhhhhhcceEEEEeee
Q 042270 36 VLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNE-----YAYYAQVAGLYYGINHT 110 (287)
Q Consensus 36 ~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~agl~~~~~~~ 110 (287)
.....++|++|++.++.. .|.+.+.+.+..|...++....+++.++..++-.+... ..-.....|.+++...+
T Consensus 8 ~~~~L~NGl~v~~~~~~~--~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~ 85 (445)
T 3ami_A 8 FETTLPNGLKVVVREDHR--APTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTT 85 (445)
T ss_dssp EEEECTTSCEEEEEECTT--SSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEEC
T ss_pred EEEECCCCCEEEEEECCC--CCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccC
Confidence 456678999999999876 79999999999988777777788998887777654322 21222334667777777
Q ss_pred CceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-CCC--HHHH
Q 042270 111 EGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ-TWP--WTEE 187 (287)
Q Consensus 111 ~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~~--~~e~ 187 (287)
.+...+.+++.+++++.++..+.+.+.+|.+++++|++.|..++.+++....++|...+...+...++++ .+. ....
T Consensus 86 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 165 (445)
T 3ami_A 86 RDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGW 165 (445)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCC
T ss_pred CCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888888999999999999999999999999999999999999999994444449989988888888853 332 2234
Q ss_pred HhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 188 LEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 188 l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
.+.|+++|.+++++|+++++.+.++.++|+||++.+++.++++.....++..
T Consensus 166 ~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~ 217 (445)
T 3ami_A 166 MNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARV 217 (445)
T ss_dssp HHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCC
T ss_pred HHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCC
Confidence 5666778999999999999999999999999999999999988776666543
No 12
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.60 E-value=2.4e-14 Score=130.70 Aligned_cols=201 Identities=7% Similarity=0.004 Sum_probs=162.5
Q ss_pred CeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh-----hhhhhhcceEEEEee
Q 042270 35 PVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEY-----AYYAQVAGLYYGINH 109 (287)
Q Consensus 35 P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~-----~y~a~~agl~~~~~~ 109 (287)
......++|++|++.++.. .+.+.+.+.+..+...++....+++.++..++..+.... .-.....|.+++...
T Consensus 7 ~~~~~L~NGl~v~~~~~~~--~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (443)
T 1hr6_B 7 TRTSKLPNGLTIATEYIPN--TSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYT 84 (443)
T ss_dssp CEEEECTTSCEEEEEECSS--CSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCCEEEEEECCC--CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 3456678999999997765 458999999999887776677888888888876543221 111122366777877
Q ss_pred eCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCC-CCC--HHH
Q 042270 110 TEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQ-TWP--WTE 186 (287)
Q Consensus 110 ~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~~--~~e 186 (287)
+.+...+.+++.+++++.++..+.+.+.++.+++++|++.|+.+..+++....+ |...+...+...++++ .+. ...
T Consensus 85 ~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g 163 (443)
T 1hr6_B 85 SRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKM-YDEVVFDHLHEITYKDQPLGRTILG 163 (443)
T ss_dssp CSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSC
T ss_pred CCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 788899999999999999999999999999999999999999999999987555 9999998888888753 332 223
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcC
Q 042270 187 ELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFK 238 (287)
Q Consensus 187 ~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~ 238 (287)
..+.|++++.+++++|+++++.+.++.+.|+||++.+++.++++.....++.
T Consensus 164 ~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 215 (443)
T 1hr6_B 164 PIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPK 215 (443)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCC
T ss_pred CHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 4455667899999999999999999999999999999999998887776764
No 13
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.58 E-value=2.4e-14 Score=143.53 Aligned_cols=216 Identities=11% Similarity=0.070 Sum_probs=166.8
Q ss_pred CCCCCCCc--cccCCCCCCCCeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhh
Q 042270 17 NVFVPTDL--SLKDTQEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHD-YLNE 93 (287)
Q Consensus 17 N~fip~~f--~~~~~~~~~~P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~-~l~e 93 (287)
+.++|... ++.. .....|..+...+|++||++++ |..|.+++.+.+..+.. +....+++.+++.++.+ ++..
T Consensus 534 ~~~~p~~~~~~i~~-~~~~~~~~~~~~nG~~v~~~~~--~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~ 608 (995)
T 2fge_A 534 LRCVPSLNLGDIPK-EPTYVPTEVGDINGVKVLRHDL--FTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKD 608 (995)
T ss_dssp HTTSCCCCGGGSCS-SCCCCCCEEEESSSSEEEEEEC--CCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSS
T ss_pred HHhcCCCCHhhcCc-cCCCCCceeeecCCceEEEEec--CCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCC
Confidence 55677654 2221 2233577777789999999987 55899999999987654 55667788899999887 5544
Q ss_pred hhhh-------hhhcceEE-EE--eeeC-----ceEEEEEeecCccHHHHHHHHHHHhccCCcChh-HHHHHHHHHHHHH
Q 042270 94 YAYY-------AQVAGLYY-GI--NHTE-----GGFEVTVVGYNHKLRILLETIFQKIAQFKVQPD-RFSVIKEMVTKEY 157 (287)
Q Consensus 94 ~~y~-------a~~agl~~-~~--~~~~-----~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~-~F~~~k~~~~~~~ 157 (287)
..|. +..+|+++ ++ +.+. .++.++++|++++++.+++.+.+.|.++.++++ +|+++|+++++++
T Consensus 609 ~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l 688 (995)
T 2fge_A 609 LTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARM 688 (995)
T ss_dssp SCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCceEeeccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 3332 24556777 44 4433 689999999999999999999999999999998 9999999999999
Q ss_pred hhhcccChHHHHHHHHHHhccCCC-CC-----------HHHHH----hhCCCCCHHHHHHHHHHHhhhheeeEEEecCCC
Q 042270 158 HNNKFLQPYQLAMYYCSLILQDQT-WP-----------WTEEL----EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 158 ~n~~~~~p~~~a~~~~~~ll~~~~-~~-----------~~e~l----~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~ 221 (287)
++...+.+...|...+..++.+.. +. ..++. +.++.+ .+++++|+++++.+.+++++|+||++
T Consensus 689 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~ 767 (995)
T 2fge_A 689 ENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGK 767 (995)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHH
T ss_pred HHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHH
Confidence 999876688888888877755321 11 12222 457788 99999999999999999999999999
Q ss_pred h-HHHHHHHHHHHHHh-cC
Q 042270 222 S-NEAGSIIQYIEDVF-FK 238 (287)
Q Consensus 222 ~-~~a~~~~~~~~~~l-~~ 238 (287)
. +++.++++.+...+ +.
T Consensus 768 ~~~~~~~~~~~~~~~l~p~ 786 (995)
T 2fge_A 768 SLTNVEKSVAKFLDLLPEN 786 (995)
T ss_dssp HHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHHhhCcc
Confidence 5 88888888877777 53
No 14
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.58 E-value=4.3e-14 Score=129.42 Aligned_cols=201 Identities=9% Similarity=0.061 Sum_probs=162.4
Q ss_pred CeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh-----hhhhhhcceEEEEee
Q 042270 35 PVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEY-----AYYAQVAGLYYGINH 109 (287)
Q Consensus 35 P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~-----~y~a~~agl~~~~~~ 109 (287)
......++|++|++.++. .|.+.+.+.+..+...++....+++.++..++..+.... .-..+..|.+++...
T Consensus 14 ~~~~~L~NGl~v~~~~~~---~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t 90 (446)
T 1pp9_A 14 TQVSQLDNGLRVASEQSS---QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYS 90 (446)
T ss_dssp CEEEECTTCCEEEEEECS---CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCCEEEEEeCC---CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence 345567899999997644 489999999999887777778899999888886543321 111223466788887
Q ss_pred eCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--HHH
Q 042270 110 TEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTWP--WTE 186 (287)
Q Consensus 110 ~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e 186 (287)
+.++..+.+++.+++++.++..+.+.+.++.+++++|++.|+.+..+++....+ |...+...+...+++ +.|. ...
T Consensus 91 ~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G 169 (446)
T 1pp9_A 91 TREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTS-MRDVVFNYLHATAFQGTPLAQSVEG 169 (446)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSC
T ss_pred cCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 888899999999999999999999999999999999999999999999987555 999999888887775 3332 223
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 187 ELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 187 ~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
..+.|++++.+++++|+++++.+.++.+.|+||++.+++.++++.....++..
T Consensus 170 ~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~ 222 (446)
T 1pp9_A 170 PSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGT 222 (446)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSC
T ss_pred CHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCC
Confidence 45566678999999999999999999999999999999999988777666543
No 15
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.57 E-value=2.8e-14 Score=132.58 Aligned_cols=200 Identities=10% Similarity=-0.025 Sum_probs=154.2
Q ss_pred eEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhh---------hhhcceEEE
Q 042270 36 VLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYY---------AQVAGLYYG 106 (287)
Q Consensus 36 ~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~---------a~~agl~~~ 106 (287)
+....++|+++|+.+++.+..|++.+.+.++.|...++..+.+++.++..|+..+....... ....|-+++
T Consensus 27 ~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~~~n 106 (492)
T 3go9_A 27 QQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPLPP 106 (492)
T ss_dssp EEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCCCS
T ss_pred EEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCcc
Confidence 55667899999999988777899999999999988888889999999999998765432111 112344555
Q ss_pred EeeeCceEEEEEeecC---ccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCC
Q 042270 107 INHTEGGFEVTVVGYN---HKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTW 182 (287)
Q Consensus 107 ~~~~~~gi~i~v~G~s---~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~ 182 (287)
.+.+.+...+.+++.+ ++++..+..+.+.+.++.|++++|++.|..+++.++....+ |...+.. ..+.. +++
T Consensus 107 a~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~ 182 (492)
T 3go9_A 107 AITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQN-IQEPWWR---YRLKGSSLI 182 (492)
T ss_dssp EEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSC-TTCHHHH---HHTTTSTTT
T ss_pred eEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccc-hhhHHHH---HHhccCCcc
Confidence 6666778888899998 67999999999999999999999999988776666655444 6543332 22222 111
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 183 PWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 183 ~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
...-..+.++.+|.+|+++|+++++.+.++.++|+||++.+++.++++..+..++..
T Consensus 183 ~~~~~~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~ 239 (492)
T 3go9_A 183 GHDPGQPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGK 239 (492)
T ss_dssp TCCTTCCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCC
T ss_pred cCCCchhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCC
Confidence 111012678999999999999999999999999999999999999998887777643
No 16
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.54 E-value=7.1e-14 Score=123.86 Aligned_cols=179 Identities=8% Similarity=0.070 Sum_probs=148.0
Q ss_pred ccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhhhhhcceEEEEeeeCceEEEEEeecCccHHHHHH
Q 042270 56 TPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNE-----YAYYAQVAGLYYGINHTEGGFEVTVVGYNHKLRILLE 130 (287)
Q Consensus 56 ~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~ 130 (287)
.|.+.+.+.+..+...++ ..+++.++..++..+... ........|.+++.+.+.++..+.+++.+++++.+++
T Consensus 10 ~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ 87 (352)
T 3cx5_B 10 TKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVN 87 (352)
T ss_dssp CSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHHH
Confidence 789999999988876543 568888888888654432 2233345678888888888999999999999999999
Q ss_pred HHHHHhccCCcChhHHH-HHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 042270 131 TIFQKIAQFKVQPDRFS-VIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSR 209 (287)
Q Consensus 131 ~i~~~l~~~~~~~~~F~-~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~L~~it~edl~~f~~~~~~~ 209 (287)
.+.+.+.+|.+++++|+ +.|+.+++++++...+ |..++...+...++++.+...-..+.|+++|.+|+++|+++++.+
T Consensus 88 ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~~~~y~~ 166 (352)
T 3cx5_B 88 ALADVLYKTAFKPHELTESVLPAARYDYAVAEQC-PVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVYTK 166 (352)
T ss_dssp HHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTTTSCSSCCSSSCCCHHHHHHHHHHHCCG
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCCCccchhhhccCCHHHHHHHHHHhCCc
Confidence 99999999999999998 9999999999976555 999999888888886544433347899999999999999999999
Q ss_pred heeeEEEecCCChHHHHHHH-HHHHHHhcC
Q 042270 210 TFLECYIAGNIESNEAGSII-QYIEDVFFK 238 (287)
Q Consensus 210 ~~~~~lv~GNi~~~~a~~~~-~~~~~~l~~ 238 (287)
.++.++|+| ++.+++.+++ +.....++.
T Consensus 167 ~n~~l~v~G-~~~~~~~~~i~~~~f~~~~~ 195 (352)
T 3cx5_B 167 ENLEVSGEN-VVEADLKRFVDESLLSTLPA 195 (352)
T ss_dssp GGEEEEEES-SCHHHHHHHHHHSTTTTSCC
T ss_pred CcEEEEEeC-CCHHHHHHHHHHHhhccCCC
Confidence 999999999 9999999988 665555553
No 17
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.40 E-value=3.9e-12 Score=126.70 Aligned_cols=201 Identities=11% Similarity=-0.002 Sum_probs=166.7
Q ss_pred eEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhhhhhcceEEEEee
Q 042270 36 VLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNE------YAYYAQVAGLYYGINH 109 (287)
Q Consensus 36 ~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e------~~y~a~~agl~~~~~~ 109 (287)
.....++|++++..+|+. .|++.+.+.+..|...++....+++.++.-|+-.+... ..-..+..|.+++.+.
T Consensus 22 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T 99 (939)
T 1q2l_A 22 QAIRLDNGMVVLLVSDPQ--AVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNAST 99 (939)
T ss_dssp EEEEETTSCEEEEEECTT--CSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEECCC--CCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEE
Confidence 466788999999999988 78999999999998878888889999988888765432 1112234577888887
Q ss_pred eCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccC-CCCC--HHH
Q 042270 110 TEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQD-QTWP--WTE 186 (287)
Q Consensus 110 ~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~e 186 (287)
+.+...+.++..++.+...|..+.+.+.+|.+++++|++.|..+..+++....+ |...+...+..++++ ++|. ...
T Consensus 100 ~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~G 178 (939)
T 1q2l_A 100 APYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTR-DGMRMAQVSAETINPAHPGSKFSGG 178 (939)
T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHSSCTTSGGGSCCSC
T ss_pred CCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHhcCCCCCCccCCCC
Confidence 888888888889999999999999999999999999999999999999987655 888888888888875 3332 334
Q ss_pred HHhhCCC----CCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 187 ELEVLPH----LEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 187 ~l~~L~~----it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
..+.|+. ++.+++++|+++++.+.++.+.|+||++.+++.++++..+..++.+
T Consensus 179 ~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~ 235 (939)
T 1q2l_A 179 NLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNK 235 (939)
T ss_dssp CHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCC
T ss_pred CHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccC
Confidence 4566666 9999999999999999999999999999999999988777666543
No 18
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.30 E-value=2.4e-11 Score=121.78 Aligned_cols=226 Identities=11% Similarity=0.006 Sum_probs=168.9
Q ss_pred CCCCCCCCCCCCCc-cccCC-CCCCCCeEeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 042270 11 LHLPAPNVFVPTDL-SLKDT-QEAKFPVLLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLH 88 (287)
Q Consensus 11 l~LP~~N~fip~~f-~~~~~-~~~~~P~~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~ 88 (287)
-.+|.-|+=+-..- ++... .+...-+....++|++|++.++.. .|++.+.+.+..+...++....+++-++.-|+-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~L~NGl~v~~~~~~~--~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf 86 (990)
T 3cww_A 9 AGIPMNNPAIKRIGNHITKSPEDKREYRGLELANGIKVLLISDPT--TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLF 86 (990)
T ss_dssp -----CCTTEEEECSCCCCCTTCCCEEEEEEETTCCEEEEEECTT--CSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGG
T ss_pred cCCcCCCccccccCCcccCCCCCCcceEEEEeCCCCEEEEEECCC--CCcEEEEEEecccCCCCCCCCCChHHHHHHHHh
Confidence 45677776544321 12222 222223567788999999999988 799999999999988777778899999888877
Q ss_pred Hhhhhh----hhh--hhhcceEEEEeeeCceEEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHHHHHhhhcc
Q 042270 89 DYLNEY----AYY--AQVAGLYYGINHTEGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVTKEYHNNKF 162 (287)
Q Consensus 89 ~~l~e~----~y~--a~~agl~~~~~~~~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~ 162 (287)
.+.... .+. ....|-+++...+.+.....+...++.+..++..+.+.+.+|.++++.|++.|..+..+++....
T Consensus 87 ~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~ 166 (990)
T 3cww_A 87 LGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVM 166 (990)
T ss_dssp GCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCcchHHHHHHHcCCceeEEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccC
Confidence 654321 111 22345567776667778888888999999999999999999999999999999999999998755
Q ss_pred cChHHHHHHHHHHhccC-CCCC--HHHHHhhCCCC-------CHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHH
Q 042270 163 LQPYQLAMYYCSLILQD-QTWP--WTEELEVLPHL-------EAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYI 232 (287)
Q Consensus 163 ~~p~~~a~~~~~~ll~~-~~~~--~~e~l~~L~~i-------t~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~ 232 (287)
+ |...+...+..++++ ++|. ..+..+.|+.+ +.+++++|+++++.+.++.+.|+||++.+++.++++..
T Consensus 167 ~-~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~ 245 (990)
T 3cww_A 167 N-DAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKL 245 (990)
T ss_dssp C-HHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHH
T ss_pred C-hHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHH
Confidence 5 777788888777775 3322 22334455555 89999999999999999999999999999999999887
Q ss_pred HHHhcCC
Q 042270 233 EDVFFKG 239 (287)
Q Consensus 233 ~~~l~~~ 239 (287)
++.++.+
T Consensus 246 f~~~~~~ 252 (990)
T 3cww_A 246 FSEVENK 252 (990)
T ss_dssp HTTSCCC
T ss_pred hcCCccC
Confidence 7766643
No 19
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.06 E-value=2.5e-09 Score=108.12 Aligned_cols=197 Identities=8% Similarity=-0.020 Sum_probs=148.9
Q ss_pred CeEeecCCCceEEEeCCCccccc--ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh----hhhhhhh---cceEE
Q 042270 35 PVLLRKSSYSTLWYKPDTMFSTP--KAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNE----YAYYAQV---AGLYY 105 (287)
Q Consensus 35 P~~i~~~~~~~vw~~~d~~f~~P--k~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e----~~y~a~~---agl~~ 105 (287)
+......+|+++++.+++. .| ...+.+.++++. ....+++.++.-++-.+... ..+.... .|-.+
T Consensus 87 ~~~~~l~nGl~vl~i~~~~--~~~~~~~f~vg~~tep----~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~l 160 (1193)
T 3s5m_A 87 TVYQHKKAKTQVISLGTND--PLDVEQAFAFYVKTLT----HSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHL 160 (1193)
T ss_dssp EEEEETTTCCEEEEEEECC--TTCCCEEEEEEEECCC----SSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEE
T ss_pred eEEEECCCCCEEEEEECCC--CCeEEEEEEEEECCCC----CCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceE
Confidence 4456678999999999887 33 244566666653 33457777777777665432 1111111 34455
Q ss_pred EEeeeCceEEEEEeecC-ccHHHHHHHHHHHhccCCcChhH--HHHH-----------------------------HHHH
Q 042270 106 GINHTEGGFEVTVVGYN-HKLRILLETIFQKIAQFKVQPDR--FSVI-----------------------------KEMV 153 (287)
Q Consensus 106 ~~~~~~~gi~i~v~G~s-~k~~~ll~~i~~~l~~~~~~~~~--F~~~-----------------------------k~~~ 153 (287)
+...+.+.....+...+ +.+..++..+++.+.+|.+++++ |.+. |..+
T Consensus 161 NA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV 240 (1193)
T 3s5m_A 161 NAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIV 240 (1193)
T ss_dssp EEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHH
T ss_pred EeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHH
Confidence 55556677888888887 78999999999999999988877 8765 4567
Q ss_pred HHHHhhhcccChHHHHHHHHHHhccCC-C--CCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHH
Q 042270 154 TKEYHNNKFLQPYQLAMYYCSLILQDQ-T--WPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQ 230 (287)
Q Consensus 154 ~~~~~n~~~~~p~~~a~~~~~~ll~~~-~--~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~ 230 (287)
..+++....+ |..++...+...+++. . +......+.|+.+|++|+++|+++++.+.++.++++||++.+++.++++
T Consensus 241 ~~E~k~~~~~-p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~ 319 (1193)
T 3s5m_A 241 YNEMKGALSS-PLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVD 319 (1193)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHH
T ss_pred HHHHHHhhCC-HHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHH
Confidence 8888877544 9999999999989864 2 3344566788899999999999999999999999999999999999998
Q ss_pred HHHHHhcC
Q 042270 231 YIEDVFFK 238 (287)
Q Consensus 231 ~~~~~l~~ 238 (287)
.....++.
T Consensus 320 ~~f~~~~~ 327 (1193)
T 3s5m_A 320 QYLGQLDY 327 (1193)
T ss_dssp HHHTTCCG
T ss_pred HHhccCCC
Confidence 87777753
No 20
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=98.96 E-value=7.2e-09 Score=103.88 Aligned_cols=193 Identities=12% Similarity=0.118 Sum_probs=143.3
Q ss_pred EeecCCCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhh----hhhh---hcceEEEEee
Q 042270 37 LLRKSSYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYA----YYAQ---VAGLYYGINH 109 (287)
Q Consensus 37 ~i~~~~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~----y~a~---~agl~~~~~~ 109 (287)
.....+|++|++.+++. .|+ .+.+-++++. ....+++-++--|+-.+....- +... ..|-.++...
T Consensus 40 ~~~l~nGl~v~~~~~~~--~~~-~~~vg~~~e~----~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T 112 (995)
T 2fge_A 40 FKHKKTGCEVMSVSNED--ENK-VFGVVFRTPP----KDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFT 112 (995)
T ss_dssp EEETTTCCEEEEEECSC--SSE-EEEEEEECCC----SSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEE
T ss_pred EEECCCCCEEEEEEcCC--Ccc-EEEEEeCCCC----cCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeE
Confidence 35668999999999987 444 4566666543 2345778877777755433211 1111 1233444444
Q ss_pred eCceEEEEEeec-CccHHHHHHHHHHHhccCCc--ChhHHHHH---------------HHHHHHHHhhhcccChHHHHHH
Q 042270 110 TEGGFEVTVVGY-NHKLRILLETIFQKIAQFKV--QPDRFSVI---------------KEMVTKEYHNNKFLQPYQLAMY 171 (287)
Q Consensus 110 ~~~gi~i~v~G~-s~k~~~ll~~i~~~l~~~~~--~~~~F~~~---------------k~~~~~~~~n~~~~~p~~~a~~ 171 (287)
+.+.....+..- .+.+..++..+++.+.+|.+ +++.|++. |..+..+++....+ |...+..
T Consensus 113 ~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~-p~~~~~~ 191 (995)
T 2fge_A 113 YPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQ-PDNILGR 191 (995)
T ss_dssp CSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTS-HHHHHHH
T ss_pred CCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCC-HHHHHHH
Confidence 445555555543 45789999999999999999 99999998 77888888877544 9999999
Q ss_pred HHHHhccCC-CC--CHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhc
Q 042270 172 YCSLILQDQ-TW--PWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 237 (287)
Q Consensus 172 ~~~~ll~~~-~~--~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 237 (287)
.+...++++ .| ......+.|+++|.+++++|+++++.+.++.++|+||++.+++.++++..+..++
T Consensus 192 ~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~ 260 (995)
T 2fge_A 192 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFE 260 (995)
T ss_dssp HHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCC
Confidence 999988863 33 3445678888999999999999999999999999999999999999988766555
No 21
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.71 E-value=4.9e-07 Score=72.98 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=108.5
Q ss_pred ccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhh-hcceEEEEeee-----Cce-EEEEEeecCc-cHHH
Q 042270 56 TPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQ-VAGLYYGINHT-----EGG-FEVTVVGYNH-KLRI 127 (287)
Q Consensus 56 ~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~-~agl~~~~~~~-----~~g-i~i~v~G~s~-k~~~ 127 (287)
.+...+.+-+..|... + .......++..+|..+.+..+|... ..|+.+++++. ..| +.+.+.+-.+ +...
T Consensus 22 ~~~~~v~~~~~~~~~~-~-~d~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~ 99 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAG-S-PDFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDK 99 (197)
T ss_dssp CCSCEEEEEEECCCTT-S-TTHHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSCHHH
T ss_pred CCCceEEEEEecCCCC-C-CcHHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCCHHH
Confidence 3555666666666543 2 2445556677777653333222211 01443333321 123 5666665555 4887
Q ss_pred HHHHHHHHhccC---CcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHH
Q 042270 128 LLETIFQKIAQF---KVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVP 204 (287)
Q Consensus 128 ll~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~L~~it~edl~~f~~ 204 (287)
++..+.+.|... .+++++|+++|.+++.++.....+ +...|..+....+.+..-...+..+.++++|.+|++++.+
T Consensus 100 ~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~-~~~~a~~l~~~~~~g~~~~~~~~~~~i~~vT~~dv~~~a~ 178 (197)
T 3ih6_A 100 ALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYAD-PEKVGVALSEAIASGDWRLFFLQRDRVREAKLDDVQRAAV 178 (197)
T ss_dssp HHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 887777776554 689999999999999999877554 8888888877777643345678899999999999999999
Q ss_pred HHhhhheeeEEEecC
Q 042270 205 MMLSRTFLECYIAGN 219 (287)
Q Consensus 205 ~~~~~~~~~~lv~GN 219 (287)
+++...+..++++|.
T Consensus 179 ~~l~~~~~~~~~~~P 193 (197)
T 3ih6_A 179 AYLVRSNRTEGRYIP 193 (197)
T ss_dssp HHSSGGGCEEEEECC
T ss_pred HhCCccCeEEEEEeC
Confidence 999887777777774
No 22
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.37 E-value=1.1e-05 Score=72.34 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=112.8
Q ss_pred cceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhh-cceEEEEeeeC-----ce-EEEEEeecCccHHHHH
Q 042270 57 PKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQV-AGLYYGINHTE-----GG-FEVTVVGYNHKLRILL 129 (287)
Q Consensus 57 Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~-agl~~~~~~~~-----~g-i~i~v~G~s~k~~~ll 129 (287)
+...+.+.+..+... ++. .....++..+|.......++.... .|+.+++++.. .| +.+.+.+=.++...++
T Consensus 234 ~q~~~~~~~~~~~~~-~~d-~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~ 311 (406)
T 3eoq_A 234 RALYLVALFPGVAYQ-EEA-RFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVL 311 (406)
T ss_dssp SSEEEEEEEECCCTT-CTT-HHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHH
T ss_pred cceEEEEEecCCCCC-Cch-HHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHH
Confidence 455666666665432 332 344566677776554444443211 46655554321 13 5666666566788888
Q ss_pred HHHHHHhccC---CcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCCHHHHHHHHHH
Q 042270 130 ETIFQKIAQF---KVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQ-DQTWPWTEELEVLPHLEAEDLAKFVPM 205 (287)
Q Consensus 130 ~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~e~l~~L~~it~edl~~f~~~ 205 (287)
+.+.+.|... .+++++++++|.+++.++.....+ +...+.......+. ....+.++.++.++++|.+|+++..++
T Consensus 312 ~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~ 390 (406)
T 3eoq_A 312 AVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGET-PMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLER 390 (406)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 8777776554 599999999999999999877554 87888877766665 455678899999999999999999999
Q ss_pred HhhhheeeEEEecCCC
Q 042270 206 MLSRTFLECYIAGNIE 221 (287)
Q Consensus 206 ~~~~~~~~~lv~GNi~ 221 (287)
++..... ++++|+..
T Consensus 391 ~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 391 GFLEKGL-YYLVLPHG 405 (406)
T ss_dssp TTTTSCE-EEEEECCC
T ss_pred hcCcccE-EEEECCCC
Confidence 9988888 99999753
No 23
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.33 E-value=1.7e-05 Score=71.34 Aligned_cols=162 Identities=10% Similarity=0.071 Sum_probs=108.4
Q ss_pred ccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhh--cceEEEEee----e-Cce-EEEEEeecCccHHH
Q 042270 56 TPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQV--AGLYYGINH----T-EGG-FEVTVVGYNHKLRI 127 (287)
Q Consensus 56 ~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~--agl~~~~~~----~-~~g-i~i~v~G~s~k~~~ 127 (287)
.+.+.+.+.+..+... ++ ......++..+|.......++.... .|+.|++++ . ..| +.+.+..=.++...
T Consensus 232 ~~q~~v~~~~~~~~~~-~~-d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~ 309 (421)
T 3hdi_A 232 TEQAHLCLGYPGLPIG-DK-DVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDD 309 (421)
T ss_dssp CSEEEEEEEEECCCTT-CT-THHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHH
T ss_pred CCceEEEEEEecCCCC-Cc-hHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHHHH
Confidence 3456666666655432 22 3344556666665544444443322 243333222 1 123 55555555567877
Q ss_pred HHHHHHHHhcc---CCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhc-cCCCCCHHHHHhhCCCCCHHHHHHHH
Q 042270 128 LLETIFQKIAQ---FKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLIL-QDQTWPWTEELEVLPHLEAEDLAKFV 203 (287)
Q Consensus 128 ll~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll-~~~~~~~~e~l~~L~~it~edl~~f~ 203 (287)
+++.+.+.|.. -.+++++++++|..++.++...... +...+.......+ .....+.++.++.++++|.+|++++.
T Consensus 310 ~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 388 (421)
T 3hdi_A 310 LVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLES-TNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLA 388 (421)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHH
Confidence 77777766654 4799999999999999999876554 7777766644444 34456788999999999999999999
Q ss_pred HHHhhhheeeEEEecCCC
Q 042270 204 PMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 204 ~~~~~~~~~~~lv~GNi~ 221 (287)
++++ .....+.++|+.+
T Consensus 389 ~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 389 KILL-SASPSISLINANG 405 (421)
T ss_dssp HHHT-TSCCEEEEEESSC
T ss_pred HHHc-ccCcEEEEECchh
Confidence 9999 8889999999864
No 24
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.29 E-value=9.1e-06 Score=73.29 Aligned_cols=162 Identities=9% Similarity=0.042 Sum_probs=107.6
Q ss_pred cceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhhhhhh--cceEEEEee----eC--ceEEEEEeecCccHHH
Q 042270 57 PKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDY-LNEYAYYAQV--AGLYYGINH----TE--GGFEVTVVGYNHKLRI 127 (287)
Q Consensus 57 Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~-l~e~~y~a~~--agl~~~~~~----~~--~gi~i~v~G~s~k~~~ 127 (287)
+.+.+.+.+..+... + .......++..+|... +...++.... .|+.|++++ .. ..+.+.+.+=.++...
T Consensus 248 ~~~~v~~~~~~~~~~-~-~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 325 (434)
T 3gwb_A 248 SQTSLMLAQLGIDRD-D-PDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEG 325 (434)
T ss_dssp SEEEEEEEEECCBTT-C-TTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHH
T ss_pred CceeEEecCcCCCCC-C-cchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhHHH
Confidence 345555555544322 2 2234455666666554 4444444322 233333322 11 2466677666667777
Q ss_pred HHHHHHHHhccC---CcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCC-HHHHHhhCCCCCHHHHHHHH
Q 042270 128 LLETIFQKIAQF---KVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWP-WTEELEVLPHLEAEDLAKFV 203 (287)
Q Consensus 128 ll~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~-~~e~l~~L~~it~edl~~f~ 203 (287)
+++.+.+.|..+ .+++++|+++|..++.++...... +...+.......+....+. ..+..+.++++|.+|++++.
T Consensus 326 ~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 404 (434)
T 3gwb_A 326 TLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTAS-NADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAM 404 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHHHH
Confidence 777777666543 689999999999999998887555 8888887777766665554 67888999999999999999
Q ss_pred HHHhhhheeeEEEecCCC
Q 042270 204 PMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 204 ~~~~~~~~~~~lv~GNi~ 221 (287)
++++......++++|+-.
T Consensus 405 ~~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 405 NKHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp HHHCCGGGCEEEEEECCC
T ss_pred HHhcChhhEEEEEEcCcc
Confidence 999998889999999744
No 25
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.27 E-value=1.7e-05 Score=71.33 Aligned_cols=163 Identities=10% Similarity=0.007 Sum_probs=111.0
Q ss_pred cceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhhhhhh--cceEEEEeeeC------ceEEEEEeecCccHHH
Q 042270 57 PKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDY-LNEYAYYAQV--AGLYYGINHTE------GGFEVTVVGYNHKLRI 127 (287)
Q Consensus 57 Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~-l~e~~y~a~~--agl~~~~~~~~------~gi~i~v~G~s~k~~~ 127 (287)
+.+.+.+.+..+.. .+ .......++..+|... ++..++.... .|+.|++++.. ..+.+.+.+-.++...
T Consensus 241 ~~~~v~~~~~~~~~-~~-~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 318 (424)
T 3amj_B 241 TQAHIAIGMPTLKR-GD-PDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADE 318 (424)
T ss_dssp SEEEEEEEEEEEBT-TC-TTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHH
T ss_pred CccEEEeeccCCCC-CC-cchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHH
Confidence 45555555554332 22 2334456667776664 5555554432 45555554321 2366767666667777
Q ss_pred HHHHHHHHhc---cCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCC-HHHHHhhCCCCCHHHHHHHH
Q 042270 128 LLETIFQKIA---QFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWP-WTEELEVLPHLEAEDLAKFV 203 (287)
Q Consensus 128 ll~~i~~~l~---~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~-~~e~l~~L~~it~edl~~f~ 203 (287)
+++.+.+.+. +..+++++|+++|..++.++...... +...+..+....+....+. ..+..+.++++|.+|++++.
T Consensus 319 ~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 397 (424)
T 3amj_B 319 AVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDS-NAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAF 397 (424)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSS-HHHHHHHHHHHHHTTCCTTTTTSHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCC-HHHHHHHHHHHHHcCCChhHHHHHHHHHHcCCHHHHHHHH
Confidence 7777776665 44689999999999999998877554 8888877766666654444 56778889999999999999
Q ss_pred HHHhhhheeeEEEecCCCh
Q 042270 204 PMMLSRTFLECYIAGNIES 222 (287)
Q Consensus 204 ~~~~~~~~~~~lv~GNi~~ 222 (287)
++++.+....++++|+-.+
T Consensus 398 ~~~l~~~~~~~~~~~~~~~ 416 (424)
T 3amj_B 398 ARHVKRENLITVVVGGKAS 416 (424)
T ss_dssp HHHCCGGGCEEEEEECC--
T ss_pred HHhcCccceEEEEECChhh
Confidence 9999988899999998643
No 26
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=98.23 E-value=3.6e-06 Score=85.27 Aligned_cols=188 Identities=11% Similarity=0.108 Sum_probs=136.8
Q ss_pred CCceEEEeCCCcccccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhh-------hhhcceEEEEeee---
Q 042270 42 SYSTLWYKPDTMFSTPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHD-YLNEYAYY-------AQVAGLYYGINHT--- 110 (287)
Q Consensus 42 ~~~~vw~~~d~~f~~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~-~l~e~~y~-------a~~agl~~~~~~~--- 110 (287)
+|+.+|+....+ .+.+++.+.|..+. -+.....+..|++.+|.+ .+....|. ...+|++++....
T Consensus 725 ~gv~v~~~~~~T--NGIvY~~l~fdl~~--l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~ 800 (1193)
T 3s5m_A 725 GNVPILVYEMPT--TGIVYLQFVFSLDH--LTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKD 800 (1193)
T ss_dssp TCEEEEEEECCC--TTEEEEEEEEECTT--CCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCC
T ss_pred CCeEEEEEECCC--CCeEEEEEEEECCC--CCHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeeccc
Confidence 688999887666 78999999998774 357788889999998854 44433333 3467888777542
Q ss_pred -----------CceEEEEEeecCccHHHHHHHHHHHhccCCcChh-HHHHHHHHHHHHHhhhcccChHHHHHHHHHHhcc
Q 042270 111 -----------EGGFEVTVVGYNHKLRILLETIFQKIAQFKVQPD-RFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQ 178 (287)
Q Consensus 111 -----------~~gi~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~-~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~ 178 (287)
...+.++..+.+++++.++..+.+.|.++.|++. ++..+..+...++++...++....|+..+...+.
T Consensus 801 ~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s 880 (1193)
T 3s5m_A 801 DHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLN 880 (1193)
T ss_dssp BTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTC
T ss_pred ccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcC
Confidence 2247899999999999999999999999999764 6999999999999998777677777776655554
Q ss_pred CCC-C-----C------HHHHHhh----CCCCCHHHHHHHHHHHhhhheeeEEEecCCC-hHHHHHHHHHHHH
Q 042270 179 DQT-W-----P------WTEELEV----LPHLEAEDLAKFVPMMLSRTFLECYIAGNIE-SNEAGSIIQYIED 234 (287)
Q Consensus 179 ~~~-~-----~------~~e~l~~----L~~it~edl~~f~~~~~~~~~~~~lv~GNi~-~~~a~~~~~~~~~ 234 (287)
+.. + + ..++++. .+.+ .++|+++++.+++..++.+.++|+.+ .+++.+.++.+.+
T Consensus 881 ~~~~~~e~~~Gl~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~ 952 (1193)
T 3s5m_A 881 SKHYAHNIIYGYENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLK 952 (1193)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHH
T ss_pred cchhhhhhhCChHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHH
Confidence 311 0 1 1111111 1223 67899999999999999999999986 4666655444433
No 27
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.23 E-value=8.8e-05 Score=66.87 Aligned_cols=162 Identities=10% Similarity=0.056 Sum_probs=108.1
Q ss_pred ccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--------hhhhhhhhh--hcceEEEEeee----C-ce-EEEEEe
Q 042270 56 TPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDY--------LNEYAYYAQ--VAGLYYGINHT----E-GG-FEVTVV 119 (287)
Q Consensus 56 ~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~--------l~e~~y~a~--~agl~~~~~~~----~-~g-i~i~v~ 119 (287)
.+...+.+.+..+.. .+ .......++..+|... +...++... ..|+.|++++. . .| +.+.+.
T Consensus 250 ~~~~~v~~~~~~~~~-~~-~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~ 327 (439)
T 1pp9_B 250 DSLVHAALVAESAAI-GS-AEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTI 327 (439)
T ss_dssp CSEEEEEEEEECCCT-TS-HHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEE
T ss_pred ccceEEEEEecCCCC-Cc-hHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEE
Confidence 455666666666543 33 3445556666666432 223333322 12433333221 2 23 556565
Q ss_pred ecCccHHHHHHHHHHHhcc---CCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCC
Q 042270 120 GYNHKLRILLETIFQKIAQ---FKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQ-DQTWPWTEELEVLPHLE 195 (287)
Q Consensus 120 G~s~k~~~ll~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~e~l~~L~~it 195 (287)
+=.++...+++.+.+.+.. ..+++++|+++|..++.++...... |...+.......+. ......++..+.++++|
T Consensus 328 ~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt 406 (439)
T 1pp9_B 328 SQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVES-SEGFLDEVGSQALAAGSYTPPSTVLQQIDAVA 406 (439)
T ss_dssp EEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCC
T ss_pred eCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCC
Confidence 5456777777777666644 5699999999999999998876554 87778776666664 44446888899999999
Q ss_pred HHHHHHHHHHHhhhheeeEEEecCCC
Q 042270 196 AEDLAKFVPMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 196 ~edl~~f~~~~~~~~~~~~lv~GNi~ 221 (287)
.+|++++.++++. ....+.++|+..
T Consensus 407 ~~dv~~~a~~~~~-~~~~~~v~g~~~ 431 (439)
T 1pp9_B 407 DADVINAAKKFVS-GRKSMAASGNLG 431 (439)
T ss_dssp HHHHHHHHHHHHH-SCEEEEEEECGG
T ss_pred HHHHHHHHHHHhc-CCceEEEECCcc
Confidence 9999999999998 688889999843
No 28
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.23 E-value=3.3e-05 Score=69.46 Aligned_cols=107 Identities=12% Similarity=0.132 Sum_probs=82.9
Q ss_pred EEEEEeecC-ccHHHHHHHHHHHhccC--CcChhHHHHHHHHHHHHHhh--hcccChHHHHHHHHHHhc-cCCCCCHHHH
Q 042270 114 FEVTVVGYN-HKLRILLETIFQKIAQF--KVQPDRFSVIKEMVTKEYHN--NKFLQPYQLAMYYCSLIL-QDQTWPWTEE 187 (287)
Q Consensus 114 i~i~v~G~s-~k~~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n--~~~~~p~~~a~~~~~~ll-~~~~~~~~e~ 187 (287)
+.+.+.+=. ++...+++.+.+.+... .+++++|+++|..++.++.. .... |...+.......+ .+......+.
T Consensus 302 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~ 380 (431)
T 3cx5_A 302 WGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGN-PVNDANLLGAEVLIKGSKLSLGEA 380 (431)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSC-HHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred EEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCC-HHHHHHHHHHHHHhcCCCCCHHHH
Confidence 456665555 67777776666554433 79999999999999999988 5444 8888877666544 4544557888
Q ss_pred HhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCC
Q 042270 188 LEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 188 l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~ 221 (287)
.+.++++|.+|++++.++++......+.++|+.+
T Consensus 381 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 381 FKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 8999999999999999999987788899999865
No 29
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.18 E-value=5.2e-05 Score=68.56 Aligned_cols=163 Identities=12% Similarity=0.103 Sum_probs=107.0
Q ss_pred ccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH---------hhhhhhhhhh--hcceEEEEe----ee-Cce-EEEEE
Q 042270 56 TPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHD---------YLNEYAYYAQ--VAGLYYGIN----HT-EGG-FEVTV 118 (287)
Q Consensus 56 ~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~---------~l~e~~y~a~--~agl~~~~~----~~-~~g-i~i~v 118 (287)
.+.+.+.+.+..+.. .++ ......++..+|.. .....++... ..|+.|+++ .. ..| +.+.+
T Consensus 244 ~~~~~v~~~~~~~~~-~~~-~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~ 321 (443)
T 1hr6_B 244 LPTTHIAIALEGVSW-SAP-DYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYI 321 (443)
T ss_dssp CSEEEEEEEEECCCT-TCT-THHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEE
T ss_pred ccceEEEEEEecCCC-CCc-cHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEE
Confidence 466777777776543 222 23444555666632 1222233221 123322221 11 223 45555
Q ss_pred eec--CccHHHHHHHHHHHh---ccCCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHh-ccCCCCCHHHHHhhCC
Q 042270 119 VGY--NHKLRILLETIFQKI---AQFKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLI-LQDQTWPWTEELEVLP 192 (287)
Q Consensus 119 ~G~--s~k~~~ll~~i~~~l---~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~l-l~~~~~~~~e~l~~L~ 192 (287)
.+= .++...+++.+.+.+ .+..+++++++++|..++.++...... |...+..+.... ..+...+..+..+.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 400 (443)
T 1hr6_B 322 VTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDG-STAIVEDIGRQVVTTGKRLSPEEVFEQVD 400 (443)
T ss_dssp EEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred EecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 554 567877777776665 454699999999999999999887554 777777666654 3455566788889999
Q ss_pred CCCHHHHHHHHHHHhhhheeeEEEecCCC
Q 042270 193 HLEAEDLAKFVPMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 193 ~it~edl~~f~~~~~~~~~~~~lv~GNi~ 221 (287)
++|.+|++++.++++......+.++|+..
T Consensus 401 ~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 429 (443)
T 1hr6_B 401 KITKDDIIMWANYRLQNKPVSMVALGNTS 429 (443)
T ss_dssp TCCHHHHHHHHHHHSSSCCEEEEEEECGG
T ss_pred hCCHHHHHHHHHHHhccCCcEEEEECCcc
Confidence 99999999999999988788899999854
No 30
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=98.14 E-value=6.1e-05 Score=68.31 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=111.6
Q ss_pred ceEEEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhhhhhhhhhh--hcceEEEEeee------C-ce-EEEEEeecCcc-
Q 042270 58 KAFVNIYFNCPHA--SSSPESEVLTDIFTRLLHDYLNEYAYYAQ--VAGLYYGINHT------E-GG-FEVTVVGYNHK- 124 (287)
Q Consensus 58 k~~i~i~i~~~~~--~~~~~~~~l~~l~~~ll~~~l~e~~y~a~--~agl~~~~~~~------~-~g-i~i~v~G~s~k- 124 (287)
...+.+.+..+.. ..+........++..+|.......++... ..|+.+++++. . .| +.+.+.+-.++
T Consensus 244 ~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~ 323 (445)
T 3ami_A 244 LPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVT 323 (445)
T ss_dssp SCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCC
T ss_pred ccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCC
Confidence 3445555555541 22134455567777788765555555432 34666655442 1 23 55666665553
Q ss_pred HHHHHHHHHHHhcc---CCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCC-CCHHHHHhhCCCCCHHHHH
Q 042270 125 LRILLETIFQKIAQ---FKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQT-WPWTEELEVLPHLEAEDLA 200 (287)
Q Consensus 125 ~~~ll~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~-~~~~e~l~~L~~it~edl~ 200 (287)
...+++.+.+.|.. -.+++++++++|..++.++...... +...+..+....+.... -...+..+.++++|.+|+.
T Consensus 324 ~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~ 402 (445)
T 3ami_A 324 IAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDS-LMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVK 402 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHH
Confidence 67777766665544 4689999999999999999887554 88888877777776543 3467788899999999999
Q ss_pred HHHHHHhhhheeeEEEecCCC
Q 042270 201 KFVPMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 201 ~f~~~~~~~~~~~~lv~GNi~ 221 (287)
++.++++...+..++++|.-.
T Consensus 403 ~~a~~~l~~~~~~~~~~~p~~ 423 (445)
T 3ami_A 403 AAAARLLTDDTLTVANLVPLP 423 (445)
T ss_dssp HHHHTTSCSTTEEEEEEEEEC
T ss_pred HHHHHHcCcCCeEEEEEccCc
Confidence 999999988788888888643
No 31
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.14 E-value=6.8e-05 Score=68.01 Aligned_cols=107 Identities=7% Similarity=-0.014 Sum_probs=84.6
Q ss_pred EEEEEeecCccHHHHHHHHHHHhccC--CcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHh-ccCCCCCHHHHHhh
Q 042270 114 FEVTVVGYNHKLRILLETIFQKIAQF--KVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLI-LQDQTWPWTEELEV 190 (287)
Q Consensus 114 i~i~v~G~s~k~~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~l-l~~~~~~~~e~l~~ 190 (287)
+.+.+.+=.++...+++.+.+.+... .+++++++++|..++.++...... |...+....... +.+...+..+..+.
T Consensus 320 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (446)
T 1pp9_A 320 LGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDG-TTPVCEDIGRSLLTYGRRIPLAEWESR 398 (446)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCS-HHHHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56666655567888777777665432 499999999999999999876544 888887765554 45555678888899
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCC
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~ 221 (287)
++++|.+|++++.++++......+.++|+.+
T Consensus 399 i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 399 IAEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HHTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 9999999999999999987788899999865
No 32
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=98.12 E-value=4.8e-05 Score=68.18 Aligned_cols=160 Identities=10% Similarity=0.050 Sum_probs=103.4
Q ss_pred ccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhhhh--cceEEEEeee---Cce-EEEEEeecCccHHHHH
Q 042270 56 TPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDYLNEYAYYAQV--AGLYYGINHT---EGG-FEVTVVGYNHKLRILL 129 (287)
Q Consensus 56 ~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~--agl~~~~~~~---~~g-i~i~v~G~s~k~~~ll 129 (287)
.+.+.+.+.+..|....+ .......++..+|.......++.... .|+.|++++. ..| +.+.+..=.++...++
T Consensus 252 ~~~~~v~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~ 330 (425)
T 3d3y_A 252 LAQSKLNLAYNTDIYYGD-SYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVL 330 (425)
T ss_dssp CSSEEEEEEEECCCCTTS-TTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHH
T ss_pred ccccEEEEEeecCCCCCC-chHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHHHHH
Confidence 456667776766432222 23445566666664333343443321 2443333321 123 4555544445777777
Q ss_pred HHHHHHhcc---CCcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCCHHHHHHHHHH
Q 042270 130 ETIFQKIAQ---FKVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQ-DQTWPWTEELEVLPHLEAEDLAKFVPM 205 (287)
Q Consensus 130 ~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~e~l~~L~~it~edl~~f~~~ 205 (287)
+.+.+.+.. -.+++++|+++|..++.++...... |...+.......+. +...+..+..+.++++|.+|++++.++
T Consensus 331 ~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~ 409 (425)
T 3d3y_A 331 RLISTELENIRLGKIRELEIEQTKAMLKNQYILALDN-AGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKR 409 (425)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccC-HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHh
Confidence 766665544 4689999999999999999887554 88888877777776 544567888999999999999999999
Q ss_pred HhhhheeeEEEecC
Q 042270 206 MLSRTFLECYIAGN 219 (287)
Q Consensus 206 ~~~~~~~~~lv~GN 219 (287)
++.. -..+|.|+
T Consensus 410 ~~~~--~~~~v~g~ 421 (425)
T 3d3y_A 410 LELQ--AIFFLEGE 421 (425)
T ss_dssp CEEE--EEEEEEEE
T ss_pred ccCc--eEEEEeCC
Confidence 8654 34466665
No 33
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=98.11 E-value=0.00011 Score=67.28 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=108.9
Q ss_pred ccceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-----------hhhhhhhhh--hcceEEEEeee-----Cce-EEE
Q 042270 56 TPKAFVNIYFNCPHASSSPESEVLTDIFTRLLHDY-----------LNEYAYYAQ--VAGLYYGINHT-----EGG-FEV 116 (287)
Q Consensus 56 ~Pk~~i~i~i~~~~~~~~~~~~~l~~l~~~ll~~~-----------l~e~~y~a~--~agl~~~~~~~-----~~g-i~i 116 (287)
.+...+.+.+..+.. .++ ......++..+|... +...++... ..|+.+++.+. ..| +.+
T Consensus 241 ~~~~~v~~~~~~~~~-~~~-d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i 318 (475)
T 1hr6_A 241 PELFHIQIGFEGLPI-DHP-DIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGI 318 (475)
T ss_dssp CCCEEEEEEEECCCT-TCT-THHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEE
T ss_pred ccceEEEEEEecCCC-CCc-cHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEE
Confidence 345666666664333 222 223345566666421 234444332 13555544331 123 567
Q ss_pred EEeecCccHHHHHHHHHHHhccC------CcChhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhc-cCCCCCHHHHHh
Q 042270 117 TVVGYNHKLRILLETIFQKIAQF------KVQPDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLIL-QDQTWPWTEELE 189 (287)
Q Consensus 117 ~v~G~s~k~~~ll~~i~~~l~~~------~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll-~~~~~~~~e~l~ 189 (287)
.+.+=.++....++.+.+.+... .+++++|+++|..++.++...... +...+..+...++ .+...+.++..+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 397 (475)
T 1hr6_A 319 SLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLES-KLVELEDMGRQVLMHGRKIPVNEMIS 397 (475)
T ss_dssp EEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 77665668888888887776543 489999999999999999876444 7777777666543 454556888899
Q ss_pred hCCCCCHHHHHHHHHHHhhh---------heeeEEEecCC
Q 042270 190 VLPHLEAEDLAKFVPMMLSR---------TFLECYIAGNI 220 (287)
Q Consensus 190 ~L~~it~edl~~f~~~~~~~---------~~~~~lv~GNi 220 (287)
.++++|.+|++++.++++.. ....+.++|+.
T Consensus 398 ~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 398 KIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 99999999999999999976 47889999986
No 34
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=97.74 E-value=0.0018 Score=59.60 Aligned_cols=158 Identities=8% Similarity=-0.002 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcceEEEEeee----CceEEEEEeecCccHHHHHHHHHHHhcc---CCcChhHHHHHHH
Q 042270 79 LTDIFTRLLHDYLNEYAYYAQVAGLYYGINHT----EGGFEVTVVGYNHKLRILLETIFQKIAQ---FKVQPDRFSVIKE 151 (287)
Q Consensus 79 l~~l~~~ll~~~l~e~~y~a~~agl~~~~~~~----~~gi~i~v~G~s~k~~~ll~~i~~~l~~---~~~~~~~F~~~k~ 151 (287)
.+.++..+|...+...+-.....|+.+++++. .....+.+.+-.++...++..+.+.+.. ..+++++++++|.
T Consensus 291 ~~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~ 370 (492)
T 3go9_A 291 RSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMT 370 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhcceEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34555555554444332222244666665542 1234566677678888888777777655 4689999999999
Q ss_pred HHHHHHhhhc----ccChHHHHHHHHHHhccCCCC-CHHH---HH-hhCCCCCHHHHHHHHHHHhhhheeeEEEecCCC-
Q 042270 152 MVTKEYHNNK----FLQPYQLAMYYCSLILQDQTW-PWTE---EL-EVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE- 221 (287)
Q Consensus 152 ~~~~~~~n~~----~~~p~~~a~~~~~~ll~~~~~-~~~e---~l-~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~- 221 (287)
.++.++.... .+++..+|......++....+ ++++ .. +.++.+|.+|+.++.++++..... ++|+|+-.
T Consensus 371 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~-~vvvg~~~~ 449 (492)
T 3go9_A 371 QKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTT-LVLMQPKGE 449 (492)
T ss_dssp HHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCE-EEEEEETTS
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCe-EEEEcCCCC
Confidence 9998876542 333566777777666655433 4544 23 448899999999999999987544 55555433
Q ss_pred hH-HHHHHHHHHHHHhc
Q 042270 222 SN-EAGSIIQYIEDVFF 237 (287)
Q Consensus 222 ~~-~a~~~~~~~~~~l~ 237 (287)
.+ ...++.....+...
T Consensus 450 ~e~~~~~l~~~~~~~~~ 466 (492)
T 3go9_A 450 PEVNVKALQEIYNGIMA 466 (492)
T ss_dssp CCCCHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHhC
Confidence 22 23445555555444
No 35
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=48.80 E-value=77 Score=28.41 Aligned_cols=86 Identities=15% Similarity=0.041 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHhhhcccChHHHHHHHHHHhccCCCCCHHHH-------HhhCCCCCHHHHHH------HHHHHhhh
Q 042270 143 PDRFSVIKEMVTKEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEE-------LEVLPHLEAEDLAK------FVPMMLSR 209 (287)
Q Consensus 143 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~-------l~~L~~it~edl~~------f~~~~~~~ 209 (287)
+.+|..+|.+++... .. +..+...+...|... .+++ -+.+.+|+++|+.+ +.+.+..
T Consensus 55 ~~rf~~~K~~L~~~~-~~-----v~~sw~rl~~~L~~~---v~~I~~~~~~G~~~iP~i~f~di~~~~~s~~~~~~ir~- 124 (461)
T 2dbn_A 55 KAAIRQMKHALRAQL-GD-----VQQIFNQLSDDIATR---VAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKR- 124 (461)
T ss_dssp HHHHHHHHHHHHHHH-SC-----HHHHHHHHHHHHHHH---HHHHHHHHHTTCCSSCEEEHHHHHHTCCCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhh-HH-----HHHHHHHHHHHHHHH---HHHHHHHHhcCCCCcceecHHHhcCCCCCHHHHHHHHh-
Confidence 378999999998872 11 222222222222111 0111 13556677777643 3333333
Q ss_pred heeeEEEecCCChHHHHHHHHHHHHHhcCC
Q 042270 210 TFLECYIAGNIESNEAGSIIQYIEDVFFKG 239 (287)
Q Consensus 210 ~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~ 239 (287)
+--++|-|-|.+++|....+.+.+.+..+
T Consensus 125 -rG~vVIRgvvp~e~A~~~~~~~~~yl~~n 153 (461)
T 2dbn_A 125 -RGCAVIKGHFPREQALGWDQSMLDYLDRN 153 (461)
T ss_dssp -HSEEEEETSSCHHHHHHHHHHHHHHHHHT
T ss_pred -ccEEEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 35568899999999999999988888654
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=36.88 E-value=62 Score=27.09 Aligned_cols=109 Identities=12% Similarity=0.114 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcceEEEEee-eCce-EEEEEeecCccHHHHHHHHHHHhccCCcChhHHHHHHHHHH
Q 042270 77 EVLTDIFTRLLHDYLNEYAYYAQVAGLYYGINH-TEGG-FEVTVVGYNHKLRILLETIFQKIAQFKVQPDRFSVIKEMVT 154 (287)
Q Consensus 77 ~~l~~l~~~ll~~~l~e~~y~a~~agl~~~~~~-~~~g-i~i~v~G~s~k~~~ll~~i~~~l~~~~~~~~~F~~~k~~~~ 154 (287)
.....++..+|...+.+..-.+ + ...... ...| +.+.+.+ ++...+.+.+.+.+.+ .+++++++++|..++
T Consensus 234 ~~~l~vl~~iLg~~lre~~gl~--~--~~~~~~~~~~g~~~i~~~~--~~~~~~~~~i~~~l~~-~~t~~el~~ak~~~~ 306 (352)
T 3cx5_B 234 LAQYEVLANYLTSALSELSGLI--S--SAKLDKFTDGGLFTLFVRD--QDSAVVSSNIKKIVAD-LKKGKDLSPAINYTK 306 (352)
T ss_dssp HHHHHHHHHHHHSTTSTTGGGC--S--EEEEEEETTEEEEEEEEEE--SCHHHHHHHHHHHHHH-HHSCEECGGGHHHHH
T ss_pred HHHHHHHHHHhCcchhcccCce--E--EEeecCcCcceeEEEEEEe--CCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 3445566666665444322111 1 222221 2234 3444443 3455555555555544 389999999999999
Q ss_pred HHHhhhcccChHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhhhheeeEEEecCCC
Q 042270 155 KEYHNNKFLQPYQLAMYYCSLILQDQTWPWTEELEVLPHLEAEDLAKFVPMMLSRTFLECYIAGNIE 221 (287)
Q Consensus 155 ~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~e~l~~L~~it~edl~~f~~~~~~~~~~~~lv~GNi~ 221 (287)
.++...... +.. ..+. .++.+|..+ + ..+.+.++|+++
T Consensus 307 ~~~~~~~~~-~~~-------------~~~~-----~i~~vt~~~--------~--~~~~~~~~G~~~ 344 (352)
T 3cx5_B 307 LKNAVQNES-VSS-------------PIEL-----NFDAVKDFK--------L--GKFNYVAVGDVS 344 (352)
T ss_dssp HHHHHHCCS-TTC-------------CCCS-----CGGGCCEEC--------C--CSCEEEEEESGG
T ss_pred HHHHhhhhc-cCC-------------ccce-----eeeeeeHhh--------c--CCceEEEEcccc
Confidence 998876543 311 1111 345566332 3 678899999876
No 37
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=34.73 E-value=63 Score=24.94 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhhhhhhcceEE--EEeeeCceEEEE-EeecCcc
Q 042270 72 SSPESEVLTDIFTRLLHDYLN----EYAYYAQVAGLYY--GINHTEGGFEVT-VVGYNHK 124 (287)
Q Consensus 72 ~~~~~~~l~~l~~~ll~~~l~----e~~y~a~~agl~~--~~~~~~~gi~i~-v~G~s~k 124 (287)
++.+..++..++..++++.+. -+.|..++.|..| .....++.+.|+ .-|||+-
T Consensus 55 ~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~ivGvGypira~~~g~~l~l~N~LG~shp 114 (178)
T 1vq8_E 55 DNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAP 114 (178)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTEEEEESGGGCSSC
T ss_pred CCHHHHHHHHHHHHHHcCEEEEEccCeEEEEEEEeeCCceEEEEcCCEEEEEcccccccc
Confidence 467778888999888888664 2555555666665 555555555544 4566653
No 38
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=32.55 E-value=38 Score=28.58 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHH
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 231 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 231 (287)
|++.+.+++++-++.. ..++.+.+.|+++.+.+.++++.
T Consensus 235 LDn~~~~~l~~av~~i--~~~v~ieaSGGI~~~~i~~~a~t 273 (298)
T 3gnn_A 235 LDNFTLDMMRDAVRVT--EGRAVLEVSGGVNFDTVRAIAET 273 (298)
T ss_dssp EESCCHHHHHHHHHHH--TTSEEEEEESSCSTTTHHHHHHT
T ss_pred ECCCCHHHHHHHHHHh--CCCCeEEEEcCCCHHHHHHHHHc
Confidence 4568889988888766 45789999999999999998764
No 39
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=28.12 E-value=44 Score=23.53 Aligned_cols=43 Identities=12% Similarity=0.272 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHh-hhheeeEEEecCCChHHHHHHHHHHHHH
Q 042270 193 HLEAEDLAKFVPMML-SRTFLECYIAGNIESNEAGSIIQYIEDV 235 (287)
Q Consensus 193 ~it~edl~~f~~~~~-~~~~~~~lv~GNi~~~~a~~~~~~~~~~ 235 (287)
.+.+.|+....+.++ +..+....|..++++.+|.+.++.+..+
T Consensus 3 amnlkdllahrenlmdsakrarsaitddmdpadaaqavenvksi 46 (141)
T 2r9i_A 3 AMNLKDLLAHRENLMDSAKRARSAITDDMDPADAAQAVENVKSI 46 (141)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHH
Confidence 356788888888877 4567888889999998887766655444
No 40
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=27.31 E-value=25 Score=18.55 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=17.4
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHH
Q 042270 183 PWTEELEVLPHLEAEDLAKFVPMM 206 (287)
Q Consensus 183 ~~~e~l~~L~~it~edl~~f~~~~ 206 (287)
+.++.++++.++|+-++..+++.+
T Consensus 2 ~~~~iie~i~~lTvlEl~eLvk~l 25 (30)
T 1zav_U 2 TIDEIIEAIEKLTVSELAELVKKL 25 (30)
T ss_dssp CHHHHHHHHHHSBHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCcHHHHHHHHHHH
Confidence 346777888888887777777654
No 41
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=25.65 E-value=79 Score=21.18 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=28.0
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIFQ 134 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~~ 134 (287)
|...|+.=.+....+| +.+.+.|-.+.+..++..+-+
T Consensus 25 A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 25 ADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp HHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 5556776667777788 999999988887777766643
No 42
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=24.81 E-value=53 Score=18.54 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=20.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhhheee
Q 042270 184 WTEELEVLPHLEAEDLAKFVPMMLSRTFLE 213 (287)
Q Consensus 184 ~~e~l~~L~~it~edl~~f~~~~~~~~~~~ 213 (287)
.+++++.|.++|+-++..+++.+-....+.
T Consensus 3 ~~~iie~i~~lTvlE~~eLvk~leekfGVs 32 (40)
T 1dd4_C 3 IDEIIEAIEKLTVSELAELVKKLEDKFGVT 32 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHCCC
Confidence 456777777788777777777665554443
No 43
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=24.04 E-value=81 Score=20.98 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=28.1
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +.+.+.|-.+.+..++..+-
T Consensus 25 A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 25 ALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp HHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 5556776667777788 99999999888888777764
No 44
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=22.02 E-value=1.8e+02 Score=19.38 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhc
Q 042270 192 PHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFF 237 (287)
Q Consensus 192 ~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~ 237 (287)
+=-+++|.+...+.+. .....++-..+++.++|+.+++.+....-
T Consensus 11 ~P~sy~Da~~I~d~Lr-~~~~VvvNL~~ld~~~AqRivDF~sG~~y 55 (87)
T 3p04_A 11 ELHSFEDAQVIGGAFR-DGDAVVFDMSLLSREEARRIVDFAAGLCF 55 (87)
T ss_dssp ECSSGGGHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHhccceE
Confidence 3357888888776665 55778888889999999999998877654
No 45
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=21.80 E-value=97 Score=21.27 Aligned_cols=36 Identities=33% Similarity=0.345 Sum_probs=27.1
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +.+.+.|-.+.+..++..+-
T Consensus 37 A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 73 (101)
T 2bjd_A 37 AIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 73 (101)
T ss_dssp HHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHT
T ss_pred HHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 5556776667777788 99999998888777766653
No 46
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=21.76 E-value=59 Score=27.41 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHhhhheeeEEEecCCChHHHHHHHHH
Q 042270 191 LPHLEAEDLAKFVPMMLSRTFLECYIAGNIESNEAGSIIQY 231 (287)
Q Consensus 191 L~~it~edl~~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~ 231 (287)
|++.+.+++++.++..- .++.+.+.|||+.+.+.++++.
T Consensus 233 LDn~s~~~l~~av~~~~--~~v~leaSGGIt~~~i~~~A~t 271 (300)
T 3l0g_A 233 LDNMSISEIKKAVDIVN--GKSVLEVSGCVNIRNVRNIALT 271 (300)
T ss_dssp EESCCHHHHHHHHHHHT--TSSEEEEESSCCTTTHHHHHTT
T ss_pred ECCCCHHHHHHHHHhhc--CceEEEEECCCCHHHHHHHHHc
Confidence 45788899888887553 3688999999999999988754
No 47
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=21.40 E-value=1e+02 Score=21.04 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=27.4
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +.+.+.|-.+.+..++..+-
T Consensus 31 A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 31 GKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp HHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 5556776667777788 99999999888777766664
No 48
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=21.25 E-value=1e+02 Score=21.20 Aligned_cols=36 Identities=14% Similarity=-0.039 Sum_probs=27.2
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETIF 133 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i~ 133 (287)
|...|+.=.+....+| +.+.+.|-.+.+..++..+-
T Consensus 34 A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~ 70 (102)
T 1urr_A 34 AKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLE 70 (102)
T ss_dssp HHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 5556776667777788 99999998888777766664
No 49
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=21.01 E-value=93 Score=23.46 Aligned_cols=74 Identities=9% Similarity=0.000 Sum_probs=56.2
Q ss_pred HHHHHHHHHhccCCCCCHHHHHhhCC-CCCHHHHH--HHHHHHhhhheeeEEEecCCChHHHHHHHHHHHHHhcCCC
Q 042270 167 QLAMYYCSLILQDQTWPWTEELEVLP-HLEAEDLA--KFVPMMLSRTFLECYIAGNIESNEAGSIIQYIEDVFFKGS 240 (287)
Q Consensus 167 ~~a~~~~~~ll~~~~~~~~e~l~~L~-~it~edl~--~f~~~~~~~~~~~~lv~GNi~~~~a~~~~~~~~~~l~~~~ 240 (287)
.+++.....+-..+.|+.+|...+.+ .+...+.. .|+++++....--++-.|=++.++...-...+...+....
T Consensus 70 ~rafAl~vaL~~~G~f~wdE~R~a~E~~l~p~~Y~~~sYYe~WL~ALe~lLvekGvit~~EL~ar~aEv~ar~~~~~ 146 (157)
T 2zzd_B 70 LNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQ 146 (157)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHTTTCHHHHHHSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhcCChhhccCCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhccc
Confidence 44444544555578999999888877 77766543 6888888877666777899999999999999988887654
No 50
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=20.24 E-value=2.9e+02 Score=21.06 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh----hhhhhhhcceEEEEeeeCceEEEEEeecCc
Q 042270 72 SSPESEVLTDIFTRLLHDYLNE----YAYYAQVAGLYYGINHTEGGFEVTVVGYNH 123 (287)
Q Consensus 72 ~~~~~~~l~~l~~~ll~~~l~e----~~y~a~~agl~~~~~~~~~gi~i~v~G~s~ 123 (287)
++.+..++..++..++++++.- +.|..++.|..|.+...++.+.| .-|||+
T Consensus 56 ~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~lvGvGyra~~~G~~l~l-~LG~Sh 110 (177)
T 1rl6_A 56 DEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVL-SVGYSH 110 (177)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEEETTEEEE-ESSSSS
T ss_pred CCHHHHHHHHHHHHHHhCEEEeEcCCcEEEEEEEeeceEEEecCCEEEE-EecCCc
Confidence 4677788888888888886542 44444444544444443333443 334443
No 51
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=20.13 E-value=86 Score=21.02 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=26.2
Q ss_pred hhhcceEEEEeeeCce-EEEEEeecCccHHHHHHHH
Q 042270 98 AQVAGLYYGINHTEGG-FEVTVVGYNHKLRILLETI 132 (287)
Q Consensus 98 a~~agl~~~~~~~~~g-i~i~v~G~s~k~~~ll~~i 132 (287)
|...|+.=.+....+| +.+.+.|-.+.+..++..+
T Consensus 27 A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l 62 (91)
T 1w2i_A 27 ARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWA 62 (91)
T ss_dssp HHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHT
T ss_pred HHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHH
Confidence 5556776667777788 9999999887776666555
Done!