BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042271
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 161/576 (27%), Positives = 247/576 (42%), Gaps = 74/576 (12%)
Query: 1 FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTI-----LDQGLR-- 53
F+ +L LD+ + + L +G S LKFL N S NT+ + GL+
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFL---NVSSNTLDFPGKVSGGLKLN 148
Query: 54 --QLVHLQELYIGGYDLRGSLPWCLANMTS-LQVLYASSNELTGNISPGLCELVLMRELH 110
+++ L I G ++ G W L++ L+ L S N+++G++ C V + L
Sbjct: 149 SLEVLDLSANSISGANVVG---WVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLD 203
Query: 111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPI 170
+ +N+ +P L + ++L+ LD+S N+L+ + S + + T ++ L +S+N F PI
Sbjct: 204 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV-GPI 260
Query: 171 SLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLK 230
PL +L +++ E + LT + LSG G P F L+
Sbjct: 261 PPLPLKSLQYLSLAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 231 NADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHS-HQKLATLDVSNNFFR 289
+ LS N SG+ P + G + + L TLD+S+N F
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 290 GHI-PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAAR 348
G I P L +L L N F G IP + ++ L + +S+N L+G IP + +
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408
L L L N L+G I E + L TL LD N TGEI LS C L + LS+N
Sbjct: 439 S-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 409 HLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSC--- 465
LTGEIP+W+G L L + + NN+ G IP E SL LDL+ N T+P+
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 466 -----------------------------------FSPASIEQLHLSKNKIEGRLESII- 489
F EQL+ + + S +
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 490 --HDSP------HLVTLDLSCNSLHGSIPNQIGRLP 517
H SP ++ LD+S N L G IP +IG +P
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 145/547 (26%), Positives = 233/547 (42%), Gaps = 49/547 (8%)
Query: 3 KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELY 62
K +LE LD+ + ++ + LK L++ S D + + V+L+ L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI--SGNKISGDVDVSRCVNLEFLD 203
Query: 63 IGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPL 122
+ + +P+ L + ++LQ L S N+L+G+ S + ++ L+I +N G +P
Sbjct: 204 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 123 CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKR- 181
L SL+ L +++N+ T I ++ L LS NHF+ + + P F
Sbjct: 263 L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA---VPPFFGSCSLL 317
Query: 182 -------KTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYH-QHDLKNAD 233
F E+ +T L L+F SG + P+ L + L D
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRGLK-VLDLSFNEFSGEL-----PESLTNLSASLLTLD 371
Query: 234 LSHLNLSGK-FPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292
LS N SG PN G + + +L +L +S N+ G I
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352
P +G+ L L DL L N G IP +K LE + + +N LTGEIP ++ C +L
Sbjct: 432 PSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNL 489
Query: 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG 412
++LSNN L G I L NL L+L N F+G I L C L L L+ N G
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 413 EIPRWL----GNLSA-----LEDIIMPNNNLEGPI----------PIEFCQLNSLKILDL 453
IP + G ++A + + N+ ++ I QLN L +
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 454 SN--NSIF--RTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSI 509
N + ++ T P+ + S+ L +S N + G + I P+L L+L N + GSI
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 510 PNQIGRL 516
P+++G L
Sbjct: 670 PDEVGDL 676
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 127/464 (27%), Positives = 197/464 (42%), Gaps = 86/464 (18%)
Query: 52 LRQLVHLQELYIGGYDLRGSLPWCLANMT-SLQVLYASSNELTGNISPGLCE--LVLMRE 108
L ++ L+ L + + G LP L N++ SL L SSN +G I P LC+ ++E
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 109 LHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS 168
L++ NN G +P L+N + L L +S N L+ I SS L L+ + +L L N +
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLN-MLEG 453
Query: 169 PISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHD 228
I E ++ KT ++ I +N LT G P L + +
Sbjct: 454 EIPQELMY----VKTLETLIL-----DFNDLT----------------GEIPSGLSNCTN 488
Query: 229 LKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFF 288
L LS+ L+G+ P W I + LA L +SNN F
Sbjct: 489 LNWISLSNNRLTGEIPKW-------------------------IGRLENLAILKLSNNSF 523
Query: 289 RGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAAR 348
G+IP E+G L+ L+L+ N FNG+IP++ + I+ N + G+ +
Sbjct: 524 SGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYIKND 578
Query: 349 CFSLEILALSNN-SLQGHIFSEKFN-LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS 406
E N QG I SE+ N L+ + + G + + L +S
Sbjct: 579 GMKKECHGAGNLLEFQG-IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF 466
N L+G IP+ +G++ L + + +N++ G IP E L L ILDL
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL------------- 684
Query: 467 SPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
S NK++GR+ + L +DLS N+L G IP
Sbjct: 685 ----------SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 122/306 (39%), Gaps = 55/306 (17%)
Query: 50 QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMREL 109
Q L + L+ L + DL G +P L+N T+L + S+N LTG I + L + L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 110 HIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
+ NN G++P L + SL LD++ N I ++ F+
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA-----------------MFKQS 559
Query: 170 ISLEPLFNLSKRKTFDSEICAETESHYNSLTPKF------QLTFIS------LSGYIDGG 217
+ F KR + + E H +F QL +S ++ + GG
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 218 TFPKFLYHQHDLKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQK 277
+ + D+S+ LSG P I S
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPK-------------------------EIGSMPY 654
Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337
L L++ +N G IP E+G L GL L+LS N +G IP + + + ML +D+S N L
Sbjct: 655 LFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 338 TGEIPE 343
+G IPE
Sbjct: 714 SGPIPE 719
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA-ARCFSLEILALSNNSLQ--G 364
LS + NGS+ S F L +D+S N L+G + + C L+ L +S+N+L G
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 365 HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL 424
+ S L +L L L N +G + G LSD GE L
Sbjct: 140 KV-SGGLKLNSLEVLDLSANSISGANVV---------GWVLSDG--CGE----------L 177
Query: 425 EDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR 484
+ + + N + G + + C +L+ LD+S+N+ +P ++++ L +S NK+ G
Sbjct: 178 KHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 235
Query: 485 LESIIHDSPHLVTLDLSCNSLHGSIP 510
I L L++S N G IP
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIP 261
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 33 SLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNEL 92
S+ FL + + + + + + + +L L +G D+ GS+P + ++ L +L SSN+L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 93 TGNISPGLCELVLMRELHIDNNDLRGSLP 121
G I + L ++ E+ + NN+L G +P
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 163/582 (28%), Positives = 249/582 (42%), Gaps = 86/582 (14%)
Query: 1 FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTI-----LDQGLR-- 53
F+ +L LD+ + + L +G S LKFL N S NT+ + GL+
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFL---NVSSNTLDFPGKVSGGLKLN 151
Query: 54 --QLVHLQELYIGGYDLRGSLPWCLAN-MTSLQVLYASSNELTGNISPGLCELVLMRELH 110
+++ L I G ++ G W L++ L+ L S N+++G++ C V + L
Sbjct: 152 SLEVLDLSANSISGANVVG---WVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLD 206
Query: 111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPI 170
+ +N+ +P L + ++L+ LD+S N+L+ + S + + T ++ L +S+N F PI
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV-GPI 263
Query: 171 SLEPLFNLSKRKTFDSEICAETESHYNSLTPKF------QLTFISLSGYIDGGTFPKFLY 224
PL +L + + E+ + P F LT + LSG G P F
Sbjct: 264 PPLPLKSL--------QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 225 HQHDLKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHS-HQKLATLDV 283
L++ LS N SG+ P + G + + L TLD+
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 284 SNNFFRGHI-PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIP 342
S+N F G I P L +L L N F G IP + ++ L + +S+N L+G IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 343 ERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEG 402
+ + L L L N L+G I E + L TL LD N TGEI LS C L
Sbjct: 436 SSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 403 LYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL 462
+ LS+N LTGEIP+W+G L L + + NN+ G IP E SL LDL+ N T+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 463 PSC--------------------------------------FSPASIEQLHLSKNKIEGR 484
P+ F EQL+ +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 485 LESII---HDSP------HLVTLDLSCNSLHGSIPNQIGRLP 517
+ S + H SP ++ LD+S N L G IP +IG +P
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 145/547 (26%), Positives = 233/547 (42%), Gaps = 49/547 (8%)
Query: 3 KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELY 62
K +LE LD+ + ++ + LK L++ S D + + V+L+ L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI--SGNKISGDVDVSRCVNLEFLD 206
Query: 63 IGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPL 122
+ + +P+ L + ++LQ L S N+L+G+ S + ++ L+I +N G +P
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 123 CLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKR- 181
L SL+ L +++N+ T I ++ L LS NHF+ + + P F
Sbjct: 266 --LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA---VPPFFGSCSLL 320
Query: 182 -------KTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYH-QHDLKNAD 233
F E+ +T L L+F SG + P+ L + L D
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLK-VLDLSFNEFSGEL-----PESLTNLSASLLTLD 374
Query: 234 LSHLNLSGK-FPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292
LS N SG PN G + + +L +L +S N+ G I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352
P +G+ L L DL L N G IP +K LE + + +N LTGEIP ++ C +L
Sbjct: 435 PSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNL 492
Query: 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG 412
++LSNN L G I L NL L+L N F+G I L C L L L+ N G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 413 EIPRWL----GNLSA-----LEDIIMPNNNLEGPI----------PIEFCQLNSLKILDL 453
IP + G ++A + + N+ ++ I QLN L +
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 454 SN--NSIF--RTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSI 509
N + ++ T P+ + S+ L +S N + G + I P+L L+L N + GSI
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 510 PNQIGRL 516
P+++G L
Sbjct: 673 PDEVGDL 679
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 127/464 (27%), Positives = 197/464 (42%), Gaps = 86/464 (18%)
Query: 52 LRQLVHLQELYIGGYDLRGSLPWCLANMT-SLQVLYASSNELTGNISPGLCE--LVLMRE 108
L ++ L+ L + + G LP L N++ SL L SSN +G I P LC+ ++E
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 109 LHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQS 168
L++ NN G +P L+N + L L +S N L+ I SS L L+ + +L L N +
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLN-MLEG 456
Query: 169 PISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHD 228
I E ++ KT ++ I +N LT G P L + +
Sbjct: 457 EIPQELMY----VKTLETLIL-----DFNDLT----------------GEIPSGLSNCTN 491
Query: 229 LKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFF 288
L LS+ L+G+ P W I + LA L +SNN F
Sbjct: 492 LNWISLSNNRLTGEIPKW-------------------------IGRLENLAILKLSNNSF 526
Query: 289 RGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAAR 348
G+IP E+G L+ L+L+ N FNG+IP++ + I+ N + G+ +
Sbjct: 527 SGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYIKND 581
Query: 349 CFSLEILALSNN-SLQGHIFSEKFN-LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS 406
E N QG I SE+ N L+ + + G + + L +S
Sbjct: 582 GMKKECHGAGNLLEFQG-IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF 466
N L+G IP+ +G++ L + + +N++ G IP E L L ILDL
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL------------- 687
Query: 467 SPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510
S NK++GR+ + L +DLS N+L G IP
Sbjct: 688 ----------SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 122/306 (39%), Gaps = 55/306 (17%)
Query: 50 QGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMREL 109
Q L + L+ L + DL G +P L+N T+L + S+N LTG I + L + L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 110 HIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
+ NN G++P L + SL LD++ N I ++ F+
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA-----------------MFKQS 562
Query: 170 ISLEPLFNLSKRKTFDSEICAETESHYNSLTPKF------QLTFIS------LSGYIDGG 217
+ F KR + + E H +F QL +S ++ + GG
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 218 TFPKFLYHQHDLKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGSFWMPIHSHQK 277
+ + D+S+ LSG P I S
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPK-------------------------EIGSMPY 657
Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337
L L++ +N G IP E+G L GL L+LS N +G IP + + + ML +D+S N L
Sbjct: 658 LFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 338 TGEIPE 343
+G IPE
Sbjct: 717 SGPIPE 722
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA-ARCFSLEILALSNNSLQ--G 364
LS + NGS+ S F L +D+S N L+G + + C L+ L +S+N+L G
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 365 HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL 424
+ S L +L L L N +G + G LSD GE L
Sbjct: 143 KV-SGGLKLNSLEVLDLSANSISGANVV---------GWVLSDG--CGE----------L 180
Query: 425 EDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR 484
+ + + N + G + + C +L+ LD+S+N+ +P ++++ L +S NK+ G
Sbjct: 181 KHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238
Query: 485 LESIIHDSPHLVTLDLSCNSLHGSIP 510
I L L++S N G IP
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIP 264
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 33 SLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNEL 92
S+ FL + + + + + + + +L L +G D+ GS+P + ++ L +L SSN+L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 93 TGNISPGLCELVLMRELHIDNNDLRGSLP 121
G I + L ++ E+ + NN+L G +P
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 3/197 (1%)
Query: 315 GSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT 374
G IP + A + L + I++ ++G IP+ ++ + +L L S N+L G + +L
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 375 NLMTLQLDGNKFTGEILESL-SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNN 433
NL+ + DGN+ +G I +S S L + +S N LTG+IP NL+ L + + N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208
Query: 434 LEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSP 493
LEG + F + + + L+ NS+ L ++ L L N+I G L +
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 494 HLVTLDLSCNSLHGSIP 510
L +L++S N+L G IP
Sbjct: 269 FLHSLNVSFNNLCGEIP 285
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 106/260 (40%), Gaps = 58/260 (22%)
Query: 213 YIDG-----GTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVXXXXXXXXXXXXXXSLFGS 267
YI G G P + L ++H N+SG P++L
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-------------------- 121
Query: 268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM-KM 326
+ L TLD S N G +P I + LP L+ + N +G+IP S+ K+
Sbjct: 122 -----SQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGH---IF-----SEKFNLT---- 374
+ IS N+LTG+IP A +L + LS N L+G +F ++K +L
Sbjct: 176 FTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 375 -----------NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSA 423
NL L L N+ G + + L++ L L +S N+L GEIP+ GNL
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQR 292
Query: 424 LEDIIMPNNNLEGPIPIEFC 443
+ NN P+ C
Sbjct: 293 FDVSAYANNKCLCGSPLPAC 312
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 114/291 (39%), Gaps = 59/291 (20%)
Query: 72 LPWCLANMTSLQVLYASS-NELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
+P LAN+ L LY N L G I P + +L + L+I + ++ G++P L+ + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFD-SEIC 189
LD S N L+ + S ++S+ L+ TFD + I
Sbjct: 128 VTLDFSYNALSGTLPPS----ISSLPNLV---------------------GITFDGNRIS 162
Query: 190 AETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVX 249
Y S + F IS + G P F +L DLS L G
Sbjct: 163 GAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTF--ANLNLAFVDLSRNMLEGD------- 212
Query: 250 XXXXXXXXXXXXXSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLS 309
LFGS + QK+ S F G + + L L+L
Sbjct: 213 -----------ASVLFGS----DKNTQKIHLAKNSLAFDLGKVGLS-----KNLNGLDLR 252
Query: 310 RNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN 360
N G++P +K L +++S+N L GEIP+ + F ++ A +NN
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF--DVSAYANN 301
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 37 LSLINSSKNTILDQGLRQLVHLQELYIGGY-DLRGSLPWCLANMTSLQVLYASSNELTGN 95
LS +N K + L L +L LYIGG +L G +P +A +T L LY + ++G
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116
Query: 96 ISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSS 147
I L ++ + L N L G+LP +++L +L + N+++ I S
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 388 GEILESLSKCYLLEGLYLSDNHLTGE--IPRWLGNLSALEDIIMPN-NNLEGPIPIEFCQ 444
G + ++ ++ Y + L LS +L IP L NL L + + NNL GPIP +
Sbjct: 40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 445 LNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN 503
L L L +++ ++ +P S ++ L S N + G L I P+LV + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 504 SLHGSIPNQIG 514
+ G+IP+ G
Sbjct: 160 RISGAIPDSYG 170
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 51 GLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELH 110
+ +L L LYI ++ G++P L+ + +L L S N L+G + P + L + +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 111 IDNNDLRGSLPLCLANLTSL-RVLDVSDNQLTQNI 144
D N + G++P + + L + +S N+LT I
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 27/206 (13%)
Query: 316 SIPSSF-ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ---GHIFSEKF 371
+IPS+ AD K ++D+ N+L+ +P + R L +L L++N LQ IF E
Sbjct: 30 AIPSNIPADTK---KLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-- 83
Query: 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431
L NL TL + NK + + L L L N L PR +L+ L + +
Sbjct: 84 -LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKI----EGRLE 486
N L+ F +L SLK L L NN + R F ++ L L N++ EG +
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 487 SI-------IHDSPHLVTLDLSCNSL 505
S+ + ++P D +CN +
Sbjct: 203 SLEKLKMLQLQENPW----DCTCNGI 224
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 2/154 (1%)
Query: 17 VDVNTSFLQIVGESKPS-LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWC 75
VD ++ L + + P+ K L L ++ +++ + +L L+ LY+ L+
Sbjct: 21 VDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80
Query: 76 LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
+ +L+ L+ + N+L +LV + EL +D N L+ P +LT L L +
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
N+L Q++ LTS++EL L NN + P
Sbjct: 141 GYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVP 173
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYN 335
+ L TL V++N + +P+ + L L +L L RN P F + L + + YN
Sbjct: 85 KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 336 QLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
+L +P+ + + SL+ L L NN L+ LT L TL+LD N+
Sbjct: 144 ELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 54 QLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN 113
QLV+L EL + L+ P ++T L L NEL +L ++EL + N
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQ 142
N L+ LT L+ L + +NQL +
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 11/104 (10%)
Query: 76 LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
LA +++LQVLY N++T NISP L L ++ L I NN + PL ANL+ L L
Sbjct: 131 LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNNQVNDLTPL--ANLSKLTTLRA 186
Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLS 179
DN+++ SPL L ++ E+ L +N + PL NLS
Sbjct: 187 DDNKISD---ISPLASLPNLIEVHLKDNQISD----VSPLANLS 223
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 34 LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
+ LS N+ TI +G++ L +L L + + P L N+T + L S N L
Sbjct: 49 IATLSAFNTGVTTI--EGIQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPL- 103
Query: 94 GNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLT 153
N+S + L ++ L + + + PL A L++L+VL + NQ+T NIS PL LT
Sbjct: 104 KNVS-AIAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQIT-NIS--PLAGLT 157
Query: 154 SIEELILSNNHFFQSPISLEPLFNLSKRKTFDSE 187
+++ L + NN L PL NLSK T ++
Sbjct: 158 NLQYLSIGNNQVND----LTPLANLSKLTTLRAD 187
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 76 LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
LA +++LQVLY N++T NISP L L ++ L I N + PL ANL+ L L
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPL--ANLSKLTTLKA 180
Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLS 179
DN+++ SPL L ++ E+ L NN + PL N S
Sbjct: 181 DDNKISD---ISPLASLPNLIEVHLKNNQISD----VSPLANTS 217
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 25/107 (23%)
Query: 100 LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLT------------------ 141
L L + EL + N L+ +A L S++ LD++ Q+T
Sbjct: 81 LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138
Query: 142 -QNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSE 187
Q + SPL LT+++ L + N L PL NLSK T ++
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSD----LTPLANLSKLTTLKAD 181
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 114/253 (45%), Gaps = 52/253 (20%)
Query: 283 VSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF-ADMKMLERVDISYNQLTGEI 341
+S NFF+ +E+ L L N P+SF +M+ +D+++N++
Sbjct: 120 LSGNFFKPLTSLEM---------LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170
Query: 342 PERM---AARCFSLEILALSNNSLQG----HIFSEK----FNLTNLMTLQLDGNKFTGEI 390
E + + F+L L LS+ +LQ + EK F T++ TL L GN F
Sbjct: 171 EEDLLNFQGKHFTL--LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK--- 225
Query: 391 LESLSKCYL-------LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443
ES++K + ++ L LS+++ G + N + P F
Sbjct: 226 -ESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFK 270
Query: 444 QLNS--LKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDL 500
L + +K DLS + IF L S FS +EQL L++N+I ++ HL+ L+L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 501 SCNSLHGSIPNQI 513
S N L GSI +++
Sbjct: 331 SQNFL-GSIDSRM 342
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 300 LPGLMDLNLSRNAFNGSIPSS-FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS 358
L L+ LNLS+N F GSI S F ++ LE +D+SYN I AL
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-----------------IRALG 363
Query: 359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPR 416
+ S G L NL L LD N+ + L+ ++L N PR
Sbjct: 364 DQSFLG--------LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS 89
S P L+ L L TI D + L HL L + G ++ + ++SLQ L A
Sbjct: 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133
Query: 90 NELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQL 140
L + + L ++EL++ +N ++ LP +NLT+L LD+S N++
Sbjct: 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 19/220 (8%)
Query: 278 LATLDVSNN--FFRGHIP-VEIGTYLPGLMDLNLSRNAFNGSIP--SSFADMKMLERVDI 332
L LD+S N F+G + GT +DL +FNG I S+F ++ LE +D
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL-----SFNGVITMSSNFLGLEQLEHLDF 427
Query: 333 SYNQLT--GEIPERMAARCFSLEILALSNNSLQGHIFSEKFN-LTNLMTLQLDGNKFTGE 389
++ L E ++ R +L L +S+ + F+ FN L++L L++ GN F
Sbjct: 428 QHSNLKQMSEFSVFLSLR--NLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQEN 484
Query: 390 ILESL-SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSL 448
L + ++ L L LS L P +LS+L+ + M +NN + LNSL
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544
Query: 449 KILDLSNNSIFRTLPSCFS--PASIEQLHLSKNKIEGRLE 486
++LD S N I + P+S+ L+L++N E
Sbjct: 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
L++L LS +Q +L++L TL L GN L + S L+ L + +L
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 412 GEIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNSI 458
+G+L L+++ + +N ++ +P F L +L+ LDLS+N I
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 34 LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
L++L L TI D+ L HL L + G ++ P + +TSL+ L A +L
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 94 GNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHL 152
S + +L+ +++L++ +N + LP +NLT+L +D+S N + Q I+ + L L
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI-QTITVNDLQFL 176
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS 89
S P L+ L L TI D + L HL L + G ++ + ++SLQ L A
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 90 NELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQL 140
L + + L ++EL++ +N ++ LP +NLT+L LD+S N++
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 19/220 (8%)
Query: 278 LATLDVSNN--FFRGHIP-VEIGTYLPGLMDLNLSRNAFNGSIP--SSFADMKMLERVDI 332
L LD+S N F+G + GT +DL +FNG I S+F ++ LE +D
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL-----SFNGVITMSSNFLGLEQLEHLDF 403
Query: 333 SYNQLT--GEIPERMAARCFSLEILALSNNSLQGHIFSEKFN-LTNLMTLQLDGNKFTGE 389
++ L E ++ R +L L +S+ + F+ FN L++L L++ GN F
Sbjct: 404 QHSNLKQMSEFSVFLSLR--NLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 390 IL-ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSL 448
L + ++ L L LS L P +LS+L+ + M +NN + LNSL
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Query: 449 KILDLSNNSIFRTLPSCFS--PASIEQLHLSKNKIEGRLE 486
++LD S N I + P+S+ L+L++N E
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
L++L LS +Q +L++L TL L GN L + S L+ L + +L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 412 GEIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNSI 458
+G+L L+++ + +N ++ +P F L +L+ LDLS+N I
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 34 LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
L++L L TI D+ L HL L + G ++ P + +TSL+ L A +L
Sbjct: 53 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 112
Query: 94 GNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHL 152
S + +L+ +++L++ +N + LP +NLT+L +D+S N + Q I+ + L L
Sbjct: 113 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI-QTITVNDLQFL 171
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 80/201 (39%), Gaps = 25/201 (12%)
Query: 4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYI 63
FK+L HL++ ++ ++ PSL L L ++ T+ Q L L+EL++
Sbjct: 55 FKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 114
Query: 64 GGYDLRGSLPWCLANMTSLQVL---------YASSNELTGNIS--------------PGL 100
+ + + SL+ L Y S G ++ P L
Sbjct: 115 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNL 174
Query: 101 CELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELIL 160
LV + EL + N L P LTSLR L + Q+ I + L S+EEL L
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA-TIERNAFDDLKSLEELNL 233
Query: 161 SNNHFFQSPISL-EPLFNLSK 180
S+N+ P L PL L +
Sbjct: 234 SHNNLMSLPHDLFTPLHRLER 254
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 10/208 (4%)
Query: 276 QKLATLDVSNNFFRGHIPVEIGTY--LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDIS 333
+ L L +S N R +E+G + LP L L L N +F + L + +
Sbjct: 59 RHLEILQLSKNLVRK---IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 334 YNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFN-LTNLMTLQLDGNKFTGEILE 392
N + IP R SL L L +I F L NL L L +
Sbjct: 116 NNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--IP 172
Query: 393 SLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILD 452
+L+ LE L LS N L P L++L + + + + F L SL+ L+
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 453 LSNNSIFRTLPSCFSP-ASIEQLHLSKN 479
LS+N++ F+P +E++HL+ N
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS 89
S P L+ L L TI D + L HL L + G ++ + ++SLQ L A
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 90 NELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQL 140
L + + L ++EL++ +N ++ LP +NLT+L LD+S N++
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
L++L LS +Q +L++L TL L GN L + S L+ L + +L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 412 GEIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNSI 458
+G+L L+++ + +N ++ +P F L +L+ LDLS+N I
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS 89
S P L+ L L TI D + L HL L + G ++ + ++SLQ L A
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 90 NELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQL 140
L + + L ++EL++ +N ++ LP +NLT+L LD+S N++
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
L++L LS +Q +L++L TL L GN L + S L+ L + +L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 412 GEIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNSI 458
+G+L L+++ + +N ++ +P F L +L+ LDLS+N I
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS 89
S P L+ L L TI D + L HL L + G ++ + ++SLQ L A
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 90 NELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQL 140
L + + L ++EL++ +N ++ LP +NLT+L LD+S N++
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
L++L LS +Q +L++L TL L GN L + S L+ L + +L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 412 GEIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNSI 458
+G+L L+++ + +N ++ +P F L +L+ LDLS+N I
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS 89
S P L+ L L TI D + L HL L + G ++ + ++SLQ L A
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 90 NELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQL 140
L + + L ++EL++ +N ++ LP +NLT+L LD+S N++
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
L++L LS +Q +L++L TL L GN L + S L+ L + +L
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 412 GEIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNSI 458
+G+L L+++ + +N ++ +P F L +L+ LDLS+N I
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS 89
S P L+ L L TI D + L HL L + G ++ + ++SLQ L A
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 90 NELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQL 140
L + + L ++EL++ +N ++ LP +NLT+L LD+S N++
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
L++L LS +Q +L++L TL L GN L + S L+ L + +L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 412 GEIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNSI 458
+G+L L+++ + +N ++ +P F L +L+ LDLS+N I
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 80 TSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQ 139
++VL+ + +LT + L +L+L+ L + +N LR LP LA L L VL SDN
Sbjct: 441 ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA 497
Query: 140 LTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSK 180
L +N+ + +L ++EL+L NN QS +++PL + +
Sbjct: 498 L-ENVDG--VANLPRLQELLLCNNRLQQS-AAIQPLVSCPR 534
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 330 VDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF-TG 388
+D+S+N+L P A RC LE+L S+N+L+ NL L L L N+
Sbjct: 468 LDLSHNRLRALPPALAALRC--LEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQS 523
Query: 389 EILESLSKCYLLEGLYLSDNHLTGE 413
++ L C L L L N L E
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 80 TSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQ 139
++VL+ + +LT + L +L+L+ L + +N LR LP LA L L VL SDN
Sbjct: 441 ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA 497
Query: 140 LTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSK 180
L +N+ + +L ++EL+L NN QS +++PL + +
Sbjct: 498 L-ENVDG--VANLPRLQELLLCNNRLQQS-AAIQPLVSCPR 534
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 110/253 (43%), Gaps = 52/253 (20%)
Query: 283 VSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF-ADMKMLERVDISYNQLTGEI 341
+S NFF+ +E+ L L N P+SF +M+ +D+++N++
Sbjct: 120 LSGNFFKPLTSLEM---------LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170
Query: 342 PERM---AARCFSLEILALSNNSLQG----HIFSEK----FNLTNLMTLQLDGNKFTGEI 390
E + + F+L L LS+ +LQ + EK F T++ TL L GN F
Sbjct: 171 EEDLLNFQGKHFTL--LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK--- 225
Query: 391 LESLSKCYL-------LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443
ES++K + ++ L LS+++ G + N + P F
Sbjct: 226 -ESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFK 270
Query: 444 QLNS--LKILDLSNNSIFRTLPSCFSP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDL 500
L + +K DLS + IF L S FS +EQL L++N+I ++ HL L L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELAL 330
Query: 501 SCNSLHGSIPNQI 513
N L S+P+ I
Sbjct: 331 DTNQLK-SVPDGI 342
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 80/201 (39%), Gaps = 25/201 (12%)
Query: 4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYI 63
FK+L HL++ ++ ++ PSL L L ++ T+ Q L L+EL++
Sbjct: 55 FKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 114
Query: 64 GGYDLRGSLPWCLANMTSLQVL---------YASSNELTGNIS--------------PGL 100
+ + + SL+ L Y S G ++ P L
Sbjct: 115 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNL 174
Query: 101 CELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELIL 160
LV + EL + N L P LTSLR L + Q+ I + L S+EEL L
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA-TIERNAFDDLKSLEELNL 233
Query: 161 SNNHFFQSPISL-EPLFNLSK 180
S+N+ P L PL L +
Sbjct: 234 SHNNLMSLPHDLFTPLHRLER 254
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 10/208 (4%)
Query: 276 QKLATLDVSNNFFRGHIPVEIGTY--LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDIS 333
+ L L +S N R +E+G + LP L L L N +F + L + +
Sbjct: 59 RHLEILQLSKNLVRK---IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 334 YNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILE 392
N + IP R SL L L +I F L NL L L +
Sbjct: 116 NNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--IP 172
Query: 393 SLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILD 452
+L+ LE L LS N L P L++L + + + + F L SL+ L+
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 453 LSNNSIFRTLPSCFSP-ASIEQLHLSKN 479
LS+N++ F+P +E++HL+ N
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS 89
S P L+ L L TI D + L HL L + G ++ + ++SLQ L A
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALE 111
Query: 90 NELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQL 140
L + + L ++EL++ +N ++ LP +NLT+L LD+S N++
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
L++L LS +Q +L++L TL L GN L + S L+ L + +L
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 412 GEIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLNSLKILDLSNNSI 458
+G+L L+++ + +N ++ +P F L +L+ LDLS+N I
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 76 LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
L N+T+L L SSN ++ +IS L L +++L+ +N + PL ANLT+L LD+
Sbjct: 125 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDI 180
Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHF 165
S N+++ S L LT++E LI +NN
Sbjct: 181 SSNKVSD---ISVLAKLTNLESLIATNNQI 207
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 21/180 (11%)
Query: 4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILD-QGLRQLVHLQELY 62
KNL +L+ E+ + + + G L L +N S N + D + L L L+ L
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSG-----LTSLQQLNFSSNQVTDLKPLANLTTLERLD 179
Query: 63 IGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLR--GSL 120
I + S LA +T+L+ L A++N+++ +I+P L L + EL ++ N L+ G+L
Sbjct: 180 ISSN--KVSDISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSLNGNQLKDIGTL 235
Query: 121 PLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQ-SPIS-LEPLFNL 178
A+LT+L LD+++NQ++ + +PL LT + EL L N SP++ L L NL
Sbjct: 236 ----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 288
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 86/202 (42%), Gaps = 32/202 (15%)
Query: 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN 359
L L LN S N P A++ LER+DIS N+++ + A+ +LE L +N
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATN 204
Query: 360 N-----------------SLQGHIFSEK---FNLTNLMTLQLDGNKFTGEILESLSKCYL 399
N SL G+ + +LTNL L L N+ + L LS
Sbjct: 205 NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTK 262
Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459
L L L N ++ P L L+AL ++ + N LE PI L +L L L N+I
Sbjct: 263 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNIS 318
Query: 460 RTLPSCFSPASIEQLHLSKNKI 481
P S +++L NK+
Sbjct: 319 DISP-VSSLTKLQRLFFYNNKV 339
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459
L + S+N LT P L NL+ L DI+M NN + P+ L +L L L NN I
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQIT 120
Query: 460 RTLPSCFSPASIEQLHLSKNKI 481
P + ++ +L LS N I
Sbjct: 121 DIDP-LKNLTNLNRLELSSNTI 141
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 35/161 (21%)
Query: 43 SKNTILD-QGLRQLVHLQELYIGG--YDLRGSLPWCLANMTSLQVLYASSNELTGNISPG 99
S NTI D L L LQ+L G DL+ LAN+T+L+ L SSN+++ +IS
Sbjct: 141 SSNTISDISALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVS-DISV- 193
Query: 100 LCELVLMRELHIDNNDLRGSLPL--------------------CLANLTSLRVLDVSDNQ 139
L +L + L NN + PL LA+LT+L LD+++NQ
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 253
Query: 140 LTQNISSSPLMHLTSIEELILSNNHFFQ-SPIS-LEPLFNL 178
++ + +PL LT + EL L N SP++ L L NL
Sbjct: 254 IS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 291
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 76 LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN--NDLRGSLPLCLANLTSLRVL 133
L N+T+L L SSN ++ +IS L L +++L N DL+ LANLT+L L
Sbjct: 129 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERL 181
Query: 134 DVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
D+S N+++ S L LT++E LI +NN
Sbjct: 182 DISSNKVSD---ISVLAKLTNLESLIATNNQI 210
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 30/181 (16%)
Query: 321 FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN-----------------SLQ 363
A++ LER+DIS N+++ + A+ +LE L +NN SL
Sbjct: 172 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 228
Query: 364 GHIFSEK---FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGN 420
G+ + +LTNL L L N+ + L LS L L L N ++ P L
Sbjct: 229 GNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAG 284
Query: 421 LSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNK 480
L+AL ++ + N LE PI L +L L L N+I P S +++L + NK
Sbjct: 285 LTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNK 341
Query: 481 I 481
+
Sbjct: 342 V 342
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 76 LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
L N+T+L L SSN ++ +IS L L +++L +N + PL ANLT+L LD+
Sbjct: 125 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDI 180
Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHF 165
S N+++ S L LT++E LI +NN
Sbjct: 181 SSNKVSD---ISVLAKLTNLESLIATNNQI 207
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 21/180 (11%)
Query: 4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILD-QGLRQLVHLQELY 62
KNL +L+ E+ + + + G + SL+ LS S N + D + L L L+ L
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLT--SLQQLSF---SSNQVTDLKPLANLTTLERLD 179
Query: 63 IGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLR--GSL 120
I + S LA +T+L+ L A++N+++ +I+P L L + EL ++ N L+ G+L
Sbjct: 180 ISSN--KVSDISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSLNGNQLKDIGTL 235
Query: 121 PLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQ-SPIS-LEPLFNL 178
A+LT+L LD+++NQ++ + +PL LT + EL L N SP++ L L NL
Sbjct: 236 ----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 288
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 32/202 (15%)
Query: 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN 359
L L L+ S N P A++ LER+DIS N+++ + A+ +LE L +N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATN 204
Query: 360 N-----------------SLQGHIFSEK---FNLTNLMTLQLDGNKFTGEILESLSKCYL 399
N SL G+ + +LTNL L L N+ + L LS
Sbjct: 205 NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTK 262
Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459
L L L N ++ P L L+AL ++ + N LE PI L +L L L N+I
Sbjct: 263 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNIS 318
Query: 460 RTLPSCFSPASIEQLHLSKNKI 481
P S +++L S NK+
Sbjct: 319 DISP-VSSLTKLQRLFFSNNKV 339
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459
L + S+N LT P L NL+ L DI+M NN + P+ L +L L L NN I
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQIT 120
Query: 460 RTLPSCFSPASIEQLHLSKNKI 481
P + ++ +L LS N I
Sbjct: 121 DIDP-LKNLTNLNRLELSSNTI 141
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 76 LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135
L N+T+L L SSN ++ +IS L L +++L +N + PL ANLT+L LD+
Sbjct: 125 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDI 180
Query: 136 SDNQLTQNISSSPLMHLTSIEELILSNNHF 165
S N+++ S L LT++E LI +NN
Sbjct: 181 SSNKVSD---ISVLAKLTNLESLIATNNQI 207
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 21/180 (11%)
Query: 4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILD-QGLRQLVHLQELY 62
KNL +L+ E+ + + + G + SL+ LS S N + D + L L L+ L
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLT--SLQQLSF---SSNQVTDLKPLANLTTLERLD 179
Query: 63 IGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLR--GSL 120
I + S LA +T+L+ L A++N+++ +I+P L L + EL ++ N L+ G+L
Sbjct: 180 ISSN--KVSDISVLAKLTNLESLIATNNQIS-DITP-LGILTNLDELSLNGNQLKDIGTL 235
Query: 121 PLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQ-SPIS-LEPLFNL 178
A+LT+L LD+++NQ++ + +PL LT + EL L N SP++ L L NL
Sbjct: 236 ----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 288
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 86/202 (42%), Gaps = 32/202 (15%)
Query: 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN 359
L L L+ S N P A++ LER+DIS N+++ + A+ +LE L +N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATN 204
Query: 360 N-----------------SLQGHIFSEK---FNLTNLMTLQLDGNKFTGEILESLSKCYL 399
N SL G+ + +LTNL L L N+ + L LS
Sbjct: 205 NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTK 262
Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459
L L L N ++ P L L+AL ++ + N LE PI L +L L L N+I
Sbjct: 263 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNIS 318
Query: 460 RTLPSCFSPASIEQLHLSKNKI 481
P S +++L NK+
Sbjct: 319 DISP-VSSLTKLQRLFFYNNKV 339
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459
L + S+N LT P L NL+ L DI+M NN + P+ L +L L L NN I
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQIT 120
Query: 460 RTLPSCFSPASIEQLHLSKNKI 481
P + ++ +L LS N I
Sbjct: 121 DIDP-LKNLTNLNRLELSSNTI 141
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 35/161 (21%)
Query: 43 SKNTILD-QGLRQLVHLQELYIGG--YDLRGSLPWCLANMTSLQVLYASSNELTGNISPG 99
S NTI D L L LQ+L G DL+ LAN+T+L+ L SSN+++ +IS
Sbjct: 142 SSNTISDISALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVS-DISV- 194
Query: 100 LCELVLMRELHIDNNDLRGSLPL--------------------CLANLTSLRVLDVSDNQ 139
L +L + L NN + PL LA+LT+L LD+++NQ
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254
Query: 140 LTQNISSSPLMHLTSIEELILSNNHFFQ-SPIS-LEPLFNL 178
++ + +PL LT + EL L N SP++ L L NL
Sbjct: 255 IS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 76 LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN--NDLRGSLPLCLANLTSLRVL 133
L N+T+L L SSN ++ +IS L L +++L N DL+ LANLT+L L
Sbjct: 130 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERL 182
Query: 134 DVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
D+S N+++ S L LT++E LI +NN
Sbjct: 183 DISSNKVSD---ISVLAKLTNLESLIATNNQI 211
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 321 FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN-----------------SLQ 363
A++ LER+DIS N+++ + A+ +LE L +NN SL
Sbjct: 173 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229
Query: 364 GHIFSEK---FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGN 420
G+ + +LTNL L L N+ + L LS L L L N ++ P L
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAG 285
Query: 421 LSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNK 480
L+AL ++ + N LE PI L +L L L N+I P S +++L NK
Sbjct: 286 LTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK 342
Query: 481 I 481
+
Sbjct: 343 V 343
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 35/161 (21%)
Query: 43 SKNTILD-QGLRQLVHLQELYIGG--YDLRGSLPWCLANMTSLQVLYASSNELTGNISPG 99
S NTI D L L LQ+L G DL+ LAN+T+L+ L SSN+++ +IS
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS-DISV- 189
Query: 100 LCELVLMRELHIDNNDLRGSLPL--------------------CLANLTSLRVLDVSDNQ 139
L +L + L NN + PL LA+LT+L LD+++NQ
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Query: 140 LTQNISSSPLMHLTSIEELILSNNHFFQ-SPIS-LEPLFNL 178
++ + +PL LT + EL L N SP++ L L NL
Sbjct: 250 IS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 287
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Query: 76 LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN--NDLRGSLPLCLANLTSLRVL 133
L N+T+L L SSN ++ +IS L L +++L+ N DL+ LANLT+L L
Sbjct: 125 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERL 177
Query: 134 DVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
D+S N+++ S L LT++E LI +NN
Sbjct: 178 DISSNKVSD---ISVLAKLTNLESLIATNNQI 206
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 321 FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN-----------------SLQ 363
A++ LER+DIS N+++ + A+ +LE L +NN SL
Sbjct: 168 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 224
Query: 364 GHIFSEK---FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGN 420
G+ + +LTNL L L N+ + L LS L L L N ++ P L
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAG 280
Query: 421 LSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNK 480
L+AL ++ + N LE PI L +L L L N+I P S +++L NK
Sbjct: 281 LTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK 337
Query: 481 I 481
+
Sbjct: 338 V 338
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459
L + S+N LT P L NL+ L DI+M NN + P+ L +L L L NN I
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQIT 120
Query: 460 RTLPSCFSPASIEQLHLSKNKI 481
P + ++ +L LS N I
Sbjct: 121 DIDP-LKNLTNLNRLELSSNTI 141
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 35/161 (21%)
Query: 43 SKNTILD-QGLRQLVHLQELYIGG--YDLRGSLPWCLANMTSLQVLYASSNELTGNISPG 99
S NTI D L L LQ+L G DL+ LAN+T+L+ L SSN+++ +IS
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS-DISV- 189
Query: 100 LCELVLMRELHIDNNDLRGSLPL--------------------CLANLTSLRVLDVSDNQ 139
L +L + L NN + PL LA+LT+L LD+++NQ
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Query: 140 LTQNISSSPLMHLTSIEELILSNNHFFQ-SPIS-LEPLFNL 178
++ + +PL LT + EL L N SP++ L L NL
Sbjct: 250 IS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 287
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Query: 76 LANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN--NDLRGSLPLCLANLTSLRVL 133
L N+T+L L SSN ++ +IS L L +++L+ N DL+ LANLT+L L
Sbjct: 125 LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERL 177
Query: 134 DVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
D+S N+++ S L LT++E LI +NN
Sbjct: 178 DISSNKVSD---ISVLAKLTNLESLIATNNQI 206
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 30/181 (16%)
Query: 321 FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN-----------------SLQ 363
A++ LER+DIS N+++ + A+ +LE L +NN SL
Sbjct: 168 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 224
Query: 364 GHIFSEK---FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGN 420
G+ + +LTNL L L N+ + L LS L L L N ++ P L
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAG 280
Query: 421 LSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNK 480
L+AL ++ + N LE PI L +L L L N+I P S +++L S NK
Sbjct: 281 LTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFSNNK 337
Query: 481 I 481
+
Sbjct: 338 V 338
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN 359
L L L L NA +F D+ L + + N+++ +PER SL+ L L
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186
Query: 360 NSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408
N + H+ F +L LMTL L N + E+L+ L+ L L+DN
Sbjct: 187 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 10/158 (6%)
Query: 363 QGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLS 422
Q +I+ E F+ N+ + G + + S +L L S+N LT + G+L+
Sbjct: 292 QSYIY-EIFSNMNIKNFTVSGTRMVHMLCPSKISPFL--HLDFSNNLLTDTVFENCGHLT 348
Query: 423 ALEDIIMPNNNLE--GPIPIEFCQLNSLKILDLSNNSIF--RTLPSCFSPASIEQLHLSK 478
LE +I+ N L+ I Q+ SL+ LD+S NS+ C S+ L++S
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 479 NKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516
N + + + P + LDL N + SIP Q+ +L
Sbjct: 409 NILTDTIFRCL--PPRIKVLDLHSNKI-KSIPKQVVKL 443
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 54 QLVHLQELYIG----GYD-LRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRE 108
Q+ LQ+L I YD +G W SL L SSN LT I L + + +
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSW----TKSLLSLNMSSNILTDTIFRCLPPRIKVLD 427
Query: 109 LHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163
LH +N ++ S+P + L +L+ L+V+ NQL +++ LTS++++ L N
Sbjct: 428 LH--SNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTN 478
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 6/161 (3%)
Query: 281 LDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFN--GSIPSSFADMKMLERVDISYNQLT 338
LD SNN + G +L L L L N I MK L+++DIS N ++
Sbjct: 329 LDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 339 GEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCY 398
+ + + SL L +S+N L IF + + L L NK I + + K
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNKIKS-IPKQVVKLE 444
Query: 399 LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIP 439
L+ L ++ N L L++L+ I + N + P
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN 359
L L L L NA +F D+ L + + N+++ +PER SL+ L L
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 185
Query: 360 NSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408
N + H+ F +L LMTL L N + E+L+ L+ L L+DN
Sbjct: 186 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 279 ATLDVSNNFF--RGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERVDISYN 335
A SNN RG EI T LP + ++ L +N P +F+ K L R+D+S N
Sbjct: 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN 66
Query: 336 QLTGEIPE 343
Q++ P+
Sbjct: 67 QISELAPD 74
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 108 ELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQ 167
E+ ++ N ++ P + LR +D+S+NQ+++ ++ L S+ L+L N +
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITE 94
Query: 168 SPISL 172
P SL
Sbjct: 95 LPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 279 ATLDVSNNFF--RGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERVDISYN 335
A SNN RG EI T LP + ++ L +N P +F+ K L R+D+S N
Sbjct: 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN 66
Query: 336 QLTGEIPE 343
Q++ P+
Sbjct: 67 QISELAPD 74
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 108 ELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQ 167
E+ ++ N ++ P + LR +D+S+NQ+++ ++ L S+ L+L N +
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITE 94
Query: 168 SPISL 172
P SL
Sbjct: 95 LPKSL 99
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 36 FLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLAN-MTSLQVLYASSNELTG 94
+L L +S ++ + +L L +LY+GG L+ SLP + N +TSL L S+N+L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 95 NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTS 154
+ +L ++EL ++ N L+ LT L+ L + NQL +++ LTS
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTS 149
Query: 155 IEELILSNNHF 165
++ + L +N +
Sbjct: 150 LQYIWLHDNPW 160
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 19/221 (8%)
Query: 277 KLATLDVSNN--FFRGHIP-VEIGTYLPGLMDLNLSRNAFNGSIP--SSFADMKMLERVD 331
+L L +S+N F+G + GT +DL +FNG I S+F ++ LE +D
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL-----SFNGVITMSSNFLGLEQLEHLD 107
Query: 332 ISYNQLT--GEIPERMAARCFSLEILALSNNSLQGHIFSEKFN-LTNLMTLQLDGNKFTG 388
++ L E ++ R +L L +S+ + F+ FN L++L L++ GN F
Sbjct: 108 FQHSNLKQMSEFSVFLSLR--NLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQE 164
Query: 389 EILESL-SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNS 447
L + ++ L L LS L P +LS+L+ + M +NN + LNS
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224
Query: 448 LKILDLSNNSIFRTLPSCFS--PASIEQLHLSKNKIEGRLE 486
L++LD S N I + P+S+ L+L++N E
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 15/208 (7%)
Query: 279 ATLDVSNNFFRGHIPVEIGTY--LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ 336
A LD+ NN ++ G + L L L L N + P +FA + LER+ +S NQ
Sbjct: 55 ALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 337 LTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILE--SL 394
L E+PE+M L + ++ +F+ L ++ ++L N +E +
Sbjct: 112 LK-ELPEKMPKTLQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSSGIENGAF 167
Query: 395 SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLS 454
L + ++D ++T IP+ L +L ++ + N + LN+L L LS
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 455 NNSIFRTL-PSCFSPASIEQLHLSKNKI 481
NSI S + + +LHL+ NK+
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 40/217 (18%)
Query: 324 MKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDG 383
+++++ D+ ++ ++P A +L L NN + + NL NL TL L
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA-------LLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 384 NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443
NK + + + LE LYLS N L E+P + L+++ + N + F
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 444 QLNSLKILDLSNNSI-------------------------FRTLPSCFSPASIEQLHLSK 478
LN + +++L N + T+P P S+ +LHL
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDG 201
Query: 479 NKIEGRLESIIHDSPHLVTLDLSCNSL----HGSIPN 511
NKI + + +L L LS NS+ +GS+ N
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 301 PGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG------EIPERMAARCFSLEI 354
PGL++++LS N + F M+ LER+ IS N+L IP +L++
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKV 299
Query: 355 LALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408
L LS+N L H+ + L L LD N + LS + L+ L LS N
Sbjct: 300 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 349
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 55/258 (21%)
Query: 295 EIGTYLPG----LMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCF 350
EI TY + L + NA P F ++ +L + + N L+ +P +
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTP 141
Query: 351 SLEILALSNNSLQGHIFSEKFNLT-NLMTLQLDGNKFTG--------------------- 388
L L++SNN+L+ I + F T +L LQL N+ T
Sbjct: 142 KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 200
Query: 389 --------EILESLSKCYLLEG--------LYLSDNHLTGEIPRWLGNLSALEDIIMPNN 432
E+ S + ++ G L L N+LT WL N L ++ + N
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYN 258
Query: 433 NLEGPIPIEFCQLNSLKILDLSNNSIF------RTLPS--CFSPASIEQLHLSKNKIE-G 483
LE + F ++ L+ L +SNN + + +P+ + LH+ +N+ +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318
Query: 484 RLESIIHDSPHLVTLDLS 501
RLE++ D +VTL LS
Sbjct: 319 RLENLYLDHNSIVTLKLS 336
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 15/208 (7%)
Query: 279 ATLDVSNNFFRGHIPVEIGTY--LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ 336
A LD+ NN ++ G + L L L L N + P +FA + LER+ +S NQ
Sbjct: 55 ALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 337 LTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILE--SL 394
L E+PE+M L + ++ +F+ L ++ ++L N +E +
Sbjct: 112 LK-ELPEKMPKTLQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSSGIENGAF 167
Query: 395 SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLS 454
L + ++D ++T IP+ L +L ++ + N + LN+L L LS
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 455 NNSIFRTL-PSCFSPASIEQLHLSKNKI 481
NSI S + + +LHL+ NK+
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 40/217 (18%)
Query: 324 MKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDG 383
+++++ D+ ++ ++P A +L L NN + + NL NL TL L
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA-------LLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 384 NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443
NK + + + LE LYLS N L E+P + L+++ + N + F
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 444 QLNSLKILDLSNNSI-------------------------FRTLPSCFSPASIEQLHLSK 478
LN + +++L N + T+P P S+ +LHL
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDG 201
Query: 479 NKIEGRLESIIHDSPHLVTLDLSCNSL----HGSIPN 511
NKI + + +L L LS NS+ +GS+ N
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 17 VDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGL-RQLVHLQELYIGGYDLRGSLP-W 74
VD + V P+ + ++ ++ T L+ G+ L++L+ELY+G L G+LP
Sbjct: 24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVG 82
Query: 75 CLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLD 134
++T L VL +N+LT S LV ++EL + N L LP + LT L L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 135 VSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLE 173
+ NQL ++I L+S L++ + F +P E
Sbjct: 142 LDQNQL-KSIPHGAFDRLSS-----LTHAYLFGNPWDCE 174
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 403 LYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLNSLKILDLSNNSIFRT 461
LYL DN +T P +L L+++ + +N L G +P+ F L L +LDL N +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL-TV 102
Query: 462 LPSCF--SPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN 511
LPS +++L + NK+ L I HL L L N L SIP+
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH 152
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 301 PGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG------EIPERMAARCFSLEI 354
PGL++++LS N + F M+ LER+ IS N+L IP +L++
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKV 305
Query: 355 LALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408
L LS+N L H+ + L L LD N + LS + L+ L LS N
Sbjct: 306 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 355
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 51/252 (20%)
Query: 298 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILAL 357
Y + L + NA P F ++ +L + + N L+ +P + L L++
Sbjct: 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSM 154
Query: 358 SNNSLQGHIFSEKFNLT-NLMTLQLDGNKFT----------------------------- 387
SNN+L+ I + F T +L LQL N+ T
Sbjct: 155 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213
Query: 388 GEILESLSKCYLLEG--------LYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIP 439
E+ S + ++ G L L N+LT WL N L ++ + N LE +
Sbjct: 214 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMY 271
Query: 440 IEFCQLNSLKILDLSNNSIF------RTLPS--CFSPASIEQLHLSKNKIE-GRLESIIH 490
F ++ L+ L +SNN + + +P+ + LH+ +N+ + RLE++
Sbjct: 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 331
Query: 491 DSPHLVTLDLSC 502
D +VTL LS
Sbjct: 332 DHNSIVTLKLST 343
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 26/191 (13%)
Query: 291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYN-QLTGEIPERMAA-- 347
++P L L L NA G ++F + +LE++D+S N QL P
Sbjct: 45 YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 348 --------RC-------------FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
RC +L+ L L +N+LQ + +L NL L L GN+
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQL 445
+ + L+ L L NH+ P +L L + + NNL +P E L
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLVPL 223
Query: 446 NSLKILDLSNN 456
SL+ L L++N
Sbjct: 224 RSLQYLRLNDN 234
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 10/68 (14%)
Query: 74 WCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVL 133
W ++++LQ+ NIS + + + L+++ N L LP + NL++LRVL
Sbjct: 226 WHALDLSNLQIF---------NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVL 275
Query: 134 DVSDNQLT 141
D+S N+LT
Sbjct: 276 DLSHNRLT 283
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 12/114 (10%)
Query: 308 LSRNAFNGS----IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363
L+R NG+ +P+ ++ L +D+S+N+LT +P + + CF L+ +N +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS-CFQLKYFYFFDNMVT 306
Query: 364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGL--YLSDNHLTGEIP 415
+ E NL NL L ++GN + L+ L++ + GL YL DN EIP
Sbjct: 307 TLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT-GLIFYLRDNR--PEIP 356
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 71 SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
SLP + +L VL S N LT L L ++EL++ N+L+ P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
L +++NQLT+ + + L L +++ L+L N + P
Sbjct: 151 EKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 6 NLEHLDMGEVQVDVNTSFL-------------QIVGESKPSLKFLSLINSSKNTILDQGL 52
NL+ ++ ++QVD L ++G++ P+L L + + ++ L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 53 RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
R L LQELY+ G +L+ P L L+ L ++N+LT
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
L+R +++ Q+ G +P L L LS+N LQ + L L L + N+
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL-EGPIPIEFCQL 445
T L +L L+ LYL N L P L LE + + NN L E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL----L 168
Query: 446 NSLKILD---LSNNSIFRTLPSCF 466
N L+ LD L NS++ T+P F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 71 SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
SLP + +L VL S N LT L L ++EL++ N+L+ P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
L +++NQLT+ + + L L +++ L+L N + P
Sbjct: 151 EKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 6 NLEHLDMGEVQVDVNTSFL-------------QIVGESKPSLKFLSLINSSKNTILDQGL 52
NL+ ++ ++QVD L ++G++ P+L L + + ++ L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 53 RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
R L LQELY+ G +L+ P L L+ L ++N+LT
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
L+R +++ Q+ G +P L L LS+N LQ + L L L + N+
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL-EGPIPIEFCQL 445
T L +L L+ LYL N L P L LE + + NN L E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL----L 168
Query: 446 NSLKILD---LSNNSIFRTLPSCF 466
N L+ LD L NS++ T+P F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 39/202 (19%)
Query: 317 IPSSFAD-MKMLERVDISYNQLTGEIPERMAARCF--SLEILALSNNSLQGHIFSEKFNL 373
+P SF+ +K LE +D+S N + E + A + SL+ L LS N L+
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM-------- 376
Query: 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN--HLTGEIPRWLGNLSALEDIIMPN 431
+ TGEIL +L L L +S N H + +W + L N
Sbjct: 377 -----------QKTGEILLTLKN---LTSLDISRNTFHPMPDSCQWPEKMRFL------N 416
Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHD 491
+ G ++ C +L++LD+SNN++ S F P +++L++S+NK++ ++ +
Sbjct: 417 LSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLPR-LQELYISRNKLKTLPDASLF- 472
Query: 492 SPHLVTLDLSCNSLHGSIPNQI 513
P L+ + +S N L S+P+ I
Sbjct: 473 -PVLLVMKISRNQLK-SVPDGI 492
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 316 SIPSSF-ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT 374
SIPS A MK L D+S+N++T I C +L++L L ++ +
Sbjct: 19 SIPSGLTAAMKSL---DLSFNKIT-YIGHGDLRACANLQVLILKSSRI------------ 62
Query: 375 NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDI-IMPNNN 433
N G+ SL LE L LSDNHL+ W G LS+L+ + +M N
Sbjct: 63 ---------NTIEGDAFYSLGS---LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Query: 434 LEGPIPIEFCQLNSLKILDLSNNSIF 459
+ F L +L+ L + N F
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETF 136
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 6 NLEHLDMGEVQVDVNTSFL-------------QIVGESKPSLKFLSLINSSKNTILDQGL 52
NL+ ++ ++QVD L ++G++ P+L L + + ++ L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 53 RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
R L LQELY+ G +L+ P L L+ L ++N+LT
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 71 SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
SLP + +L VL S N LT L L ++EL++ N+L+ P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
L +++NQLT+ + + L L +++ L+L N + P
Sbjct: 151 EKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
L+R +++ Q+ G +P L L LS+N LQ + L L L + N+
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL-EGPIPIEFCQL 445
T L +L L+ LYL N L P L LE + + NN L E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL----L 168
Query: 446 NSLKILD---LSNNSIFRTLPSCF 466
N L+ LD L NS++ T+P F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 6 NLEHLDMGEVQVDVNTSFL-------------QIVGESKPSLKFLSLINSSKNTILDQGL 52
NL+ ++ ++QVD L ++G++ P+L L + + ++ L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 53 RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
R L LQELY+ G +L+ P L L+ L ++N+LT
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 71 SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
SLP + +L VL S N LT L L ++EL++ N+L+ P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
L +++NQLT+ + + L L +++ L+L N + P
Sbjct: 151 EKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
L+R +++ Q+ G +P L L LS+N LQ + L L L + N+
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL-EGPIPIEFCQL 445
T L +L L+ LYL N L P L LE + + NN L E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL----L 168
Query: 446 NSLKILD---LSNNSIFRTLPSCF 466
N L+ LD L NS++ T+P F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 39/202 (19%)
Query: 317 IPSSFAD-MKMLERVDISYNQLTGEIPERMAARCF--SLEILALSNNSLQGHIFSEKFNL 373
+P SF+ +K LE +D+S N + E + A + SL+ L LS N L+
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM-------- 402
Query: 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN--HLTGEIPRWLGNLSALEDIIMPN 431
+ TGEIL +L L L +S N H + +W + L N
Sbjct: 403 -----------QKTGEILLTLKN---LTSLDISRNTFHPMPDSCQWPEKMRFL------N 442
Query: 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHD 491
+ G ++ C +L++LD+SNN++ S F P +++L++S+NK++ ++ +
Sbjct: 443 LSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLKTLPDASLF- 498
Query: 492 SPHLVTLDLSCNSLHGSIPNQI 513
P L+ + ++ N L S+P+ I
Sbjct: 499 -PVLLVMKIASNQLK-SVPDGI 518
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 316 SIPSSF-ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT 374
SIPS A MK L D+S+N++T I C +L++L L ++ +
Sbjct: 45 SIPSGLTAAMKSL---DLSFNKIT-YIGHGDLRACANLQVLILKSSRI------------ 88
Query: 375 NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDI-IMPNNN 433
N G+ SL LE L LSDNHL+ W G LS+L+ + +M N
Sbjct: 89 ---------NTIEGDAFYSLGS---LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 136
Query: 434 LEGPIPIEFCQLNSLKILDLSNNSIF 459
+ F L +L+ L + N F
Sbjct: 137 QTLGVTSLFPNLTNLQTLRIGNVETF 162
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTG 94
++L+L+ ++ I R L HL+ L +G +R + SL L N LT
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 95 NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSP------ 148
S L +REL + NN + + SL LD+ + + + IS
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197
Query: 149 ----------------LMHLTSIEELILSNNHFFQ-SPISLEPLFNLSKRKTFDSEICAE 191
L L +EEL +S NHF + P S L +L K +S++
Sbjct: 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 192 TESHYNSLTPKFQL 205
+ ++ L +L
Sbjct: 258 ERNAFDGLASLVEL 271
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 6 NLEHLDMGEVQVDVNTSFL-------------QIVGESKPSLKFLSLINSSKNTILDQGL 52
NL+ ++ ++QVD L ++G++ P+L L + + ++ L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 53 RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
R L LQELY+ G +L+ P L L+ L ++N+LT
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 71 SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
SLP + +L VL S N LT L L ++EL++ N+L+ P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
L +++N LT+ + + L L +++ L+L N + P
Sbjct: 151 EKLSLANNDLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
L+R +++ Q+ G +P L L LS+N LQ + L L L + N+
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL-EGPIPIEFCQL 445
T L +L L+ LYL N L P L LE + + NN+L E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGL----L 168
Query: 446 NSLKILD---LSNNSIFRTLPSCF 466
N L+ LD L NS++ T+P F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
L+R +++ Q+ G +P L L LS+N LQ + L L L + N+
Sbjct: 62 LDRAELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL-EGPIPIEFCQL 445
T L +L L+ LYL N L P L LE + + NNNL E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL----L 168
Query: 446 NSLKILD---LSNNSIFRTLPSCF 466
N L+ LD L NS++ T+P F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 24 LQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ 83
L ++G++ P+L L + + ++ LR L LQELY+ G +L+ P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 84 VLYASSNELT 93
L ++N LT
Sbjct: 152 KLSLANNNLT 161
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 71 SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
SLP + +L VL S N LT L L ++EL++ N+L+ P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
L +++N LT+ + + L L +++ L+L N + P
Sbjct: 151 EKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
L+R +++ Q+ G +P L L LS+N LQ + L L L + N+
Sbjct: 62 LDRAELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL-EGPIPIEFCQL 445
T L +L L+ LYL N L P L LE + + NNNL E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL----L 168
Query: 446 NSLKILD---LSNNSIFRTLPSCF 466
N L+ LD L NS++ T+P F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 6 NLEHLDMGEVQVDVNTSFL-------------QIVGESKPSLKFLSLINSSKNTILDQGL 52
NL+ ++ ++QVD L ++G++ P+L L + + ++ L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 53 RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
R L LQELY+ G +L+ P L L+ L ++N LT
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 71 SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
SLP + +L VL S N LT L L ++EL++ N+L+ P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
L +++N LT+ + + L L +++ L+L N + P
Sbjct: 151 EKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
L+R +++ Q+ G +P L L LS+N LQ + L L L + N+
Sbjct: 62 LDRAELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL-EGPIPIEFCQL 445
T L +L L+ LYL N L P L LE + + NNNL E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL----L 168
Query: 446 NSLKILD---LSNNSIFRTLPSCF 466
N L+ LD L NS++ T+P F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 24 LQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ 83
L ++G++ P+L L + + ++ LR L LQELY+ G +L+ P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 84 VLYASSNELT 93
L ++N LT
Sbjct: 152 KLSLANNNLT 161
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 71 SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
SLP + +L VL S N LT L L ++EL++ N+L+ P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
L +++N LT+ + + L L +++ L+L N + P
Sbjct: 151 EKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 36/174 (20%)
Query: 20 NTSFLQIVGESKPSLKFLSLINSSKNTILD---QGLRQLVHLQELYIGGYDLRGSLPWCL 76
+T F+ +V PS + +N ++N D QG L LQ L + L+ L
Sbjct: 340 DTPFIHMVCPPSPS--SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397
Query: 77 --ANMTSLQ-------------------------VLYASSNELTGNISPGLCELVLMREL 109
NM+SL+ VL SSN LTG++ L V + +L
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDL 457
Query: 110 HIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163
H N+ S+P + +L +L+ L+V+ NQL +++ LTS++ + L +N
Sbjct: 458 H---NNRIMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 6/161 (3%)
Query: 281 LDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF--ADMKMLERVDISYNQLT 338
L+ + N F + T L L L L RN + +M LE +D+S N L
Sbjct: 358 LNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 339 GEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCY 398
+R A S+ +L LS+N L G +F + + L L N+ I + ++
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVF--RCLPPKVKVLDLHNNRIMS-IPKDVTHLQ 473
Query: 399 LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIP 439
L+ L ++ N L L++L+ I + +N + P
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 22/104 (21%)
Query: 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNG---------------------S 316
L TLDVS N H + ++ LNLS N G S
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS 464
Query: 317 IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN 360
IP ++ L+ ++++ NQL +P+ + R SL+ + L +N
Sbjct: 465 IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN 507
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
L+R +++ Q+ G +P L L LS+N LQ + L L L + N+
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 112
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL-EGPIPIEFCQL 445
T L +L L+ LYL N L P L LE + + NNNL E P + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL----L 168
Query: 446 NSLKILD---LSNNSIFRTLPSCF 466
N L+ LD L NS++ T+P F
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGF 191
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 6 NLEHLDMGEVQVDVNTSFL-------------QIVGESKPSLKFLSLINSSKNTILDQGL 52
NL+ ++ ++QVD L ++G++ P+L L + + ++ L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 53 RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
R L LQELY+ G +L+ P L L+ L ++N LT
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 71 SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
SLP + +L VL S N LT L L ++EL++ N+L+ P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
L +++N LT+ + + L L +++ L+L N + P
Sbjct: 151 EKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 6 NLEHLDMGEVQVDVNTSFL-------------QIVGESKPSLKFLSLINSSKNTILDQGL 52
NL+ ++ ++QVD L ++G++ P+L L + + ++ L
Sbjct: 62 NLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 121
Query: 53 RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
R L LQELY+ G +L+ P L L+ L ++N LT
Sbjct: 122 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386
L+R +++ Q+ G +P L L LS+N LQ + L L L + N+
Sbjct: 63 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRL 113
Query: 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL-EGPIPIEFCQL 445
T L +L L+ LYL N L P L LE + + NNNL E P + L
Sbjct: 114 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL----L 169
Query: 446 NSLKILD---LSNNSIFRTLPSCF 466
N L+ LD L NS++ T+P F
Sbjct: 170 NGLENLDTLLLQENSLY-TIPKGF 192
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 71 SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL 130
SLP + +L VL S N LT L L ++EL++ N+L+ P L L
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 131 RVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSP 169
L +++N LT+ + + L L +++ L+L N + P
Sbjct: 152 EKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 189
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 34 LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELT 93
L+FL+L + +TI L +L+ LQE+ + G L P+ + L+VL S N+LT
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 45 NTILDQGLRQLVHLQELYIGGYDLRGSL-PWCLA--NMTSLQVLYA-------------- 87
N I D ++L L+ L I + ++ P CL N+TSL + +
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248
Query: 88 -------SSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQL 140
S N ++ L EL+ ++E+ + L P L LRVL+VS NQL
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 141 TQNISSSPLMHLTSIEELILSNN 163
T + S + ++E LIL +N
Sbjct: 309 T-TLEESVFHSVGNLETLILDSN 330
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 31/240 (12%)
Query: 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGH 365
L+L +N FA LE ++++ N ++ P F+L L L +N L+
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLI 95
Query: 366 IFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALE 425
L+NL L + NK + Y L+ L + DN L R L++LE
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 426 DIIMPNNNLEGPIPIE-------------------------FCQLNSLKILDLSNNSIFR 460
+ + NL IP E F +L LK+L++S+
Sbjct: 156 QLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 461 TL-PSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN---SLHGSIPNQIGRL 516
T+ P+C ++ L ++ + + +L L+LS N ++ GS+ +++ RL
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 302 GLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSN-N 360
GL L L+RN ++P+S A + L + I E+PE +A+ S E L N
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 361 SLQ------GHIFSEKFNLTNLMTLQLDGNKFT--GEILESLSKCYLLEGLYLSDNHLTG 412
SL+ + + NL NL +L++ + + G + L K LE L L
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK---LEELDLRGCTALR 243
Query: 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS 467
P G + L+ +I+ + + +P++ +L L+ LDL LPS +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 354 ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGE 413
+L L NN + + L +L L L NK + ++ S L+ LY+S NHL E
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116
Query: 414 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQ 473
IP L S+L ++ + +N + F L ++ +++ N + S F P + +
Sbjct: 117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---SGFEPGAFDG 171
Query: 474 LHLSKNKI-EGRLESIIHDSP 493
L L+ +I E +L I D P
Sbjct: 172 LKLNYLRISEAKLTGIPKDLP 192
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 315 GSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT 374
G P +F +K L + IS +LTG IP+ + +L L L +N +Q + +
Sbjct: 163 GFEPGAFDGLK-LNYLRISEAKLTG-IPKDLPE---TLNELHLDHNKIQAIELEDLLRYS 217
Query: 375 NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL 434
L L L N+ SLS L L+L +N L+ +P L +L L+ + + NN+
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276
Query: 435 EGPIPIEFC 443
+FC
Sbjct: 277 TKVGVNDFC 285
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 54 QLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN 113
+L +L+EL + L+ +T+L LY N+L +L + L +DN
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165
N L+ LT L+ L ++DNQL +++ LTS+ + L NN +
Sbjct: 167 NQLQSLPEGVFDKLTQLKQLSLNDNQL-KSVPDGVFDRLTSLTHIWLLNNPW 217
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 32 PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLP-WCLANMTSLQVLYASSN 90
P++++L+L + + I L++L +L L + G L+ SLP +T+L+ L N
Sbjct: 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN 119
Query: 91 ELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
+L +L + L++ +N L+ LT+L LD+ +NQL Q++
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFD 178
Query: 151 HLTSIEELILSNNHFFQSP 169
LT +++L L++N P
Sbjct: 179 KLTQLKQLSLNDNQLKSVP 197
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHL 410
++ LAL N L H S LTNL L L GN+ K L+ L L +N L
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 411 TGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP-A 469
L+ L + + +N L+ F +L +L LDL NN + F
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 470 SIEQLHLSKNKIEG-------RLESIIH 490
++QL L+ N+++ RL S+ H
Sbjct: 182 QLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 79 MTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDN 138
+T L LY N+L S L ++EL ++ N L+ LT+L+ L +S N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 139 QLTQNISSSPLMHLTSIEELILSNNHF 165
QL Q++ L ++ + L N F
Sbjct: 166 QL-QSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 79 MTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDN 138
+T L LY N+L S L ++EL ++ N L+ LT+L+ L +S N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 139 QLTQNISSSPLMHLTSIEELILSNNHF 165
QL Q++ L ++ + L N F
Sbjct: 166 QL-QSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 317 IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTN 375
+P S L +D+S+N L+ E R +L L LS+N L I SE F + N
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPN 89
Query: 376 LMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE 435
L L L N S LE L L +NH+ +++ L+ + + N +
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI- 148
Query: 436 GPIPIEFC----QLNSLKILDLSNNSIFRTLP 463
P+E +L L +LDLS+N + + LP
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKL-KKLP 179
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 17/183 (9%)
Query: 270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 329
+P H Q A L ++NN F I LP L +N S N +F +
Sbjct: 26 IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85
Query: 330 VDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG- 388
+ ++ N+L + +M SL+ L L +N + L+++ L L N+ T
Sbjct: 86 ILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
Query: 389 -----EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGP-----I 438
+ L SLS LL + + +L WLG + I+ N + P I
Sbjct: 145 APGAFDTLHSLSTLNLLANPFNCNCYLA-----WLGEWLRKKRIVTGNPRCQKPYFLKEI 199
Query: 439 PIE 441
PI+
Sbjct: 200 PIQ 202
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 37/169 (21%)
Query: 343 ERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYL-LE 401
+++ SLE + NN L+ E NL L T+ D N +L++L LE
Sbjct: 208 KKLPDLPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNN-----LLKTLPDLPPSLE 260
Query: 402 GLYLSDNHLTG--EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLK----ILDLSN 455
L + DN+LT E+P+ L L E+I F L+ L L+ S+
Sbjct: 261 ALNVRDNYLTDLPELPQSLTFLDVSENI--------------FSGLSELPPNLYYLNASS 306
Query: 456 NSIFRTLPSCFSPASIEQLHLSKNK------IEGRLESIIHDSPHLVTL 498
N I R+L C P S+E+L++S NK + RLE +I HL +
Sbjct: 307 NEI-RSL--CDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEV 352
>pdb|2LCQ|A Chain A, Solution Structure Of The Endonuclease Nob1 From
P.Horikoshii
Length = 165
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 328 ERVD--ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL 379
E +D I + TGE+ E A +E+LAL+ L+G IFS+ +N+ N+ +L
Sbjct: 64 ESIDRIIQVAKETGEVNELSKA---DIEVLALAY-ELKGEIFSDDYNVQNIASL 113
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 80 TSLQVLYASSNELTGNISPGLCE-LVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDN 138
T Q L+ ++N++T + PG+ + LV +++L+ ++N L LT L LD++DN
Sbjct: 33 TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
Query: 139 QLTQNISSSPLMHLTSIEELILSNNHF 165
L ++I +L S+ + L NN +
Sbjct: 92 HL-KSIPRGAFDNLKSLTHIYLYNNPW 117
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 58 LQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLR 117
LQEL + L LP L +++L+ L S+N+ + L I N R
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 118 GSLPL-CLANLTSLRVLDVS-DNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLE 173
L CL NL +LR LD+S D+ T + + L +L+ ++ L LS N P+SL+
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE----PLSLK 392
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411
LE L L NN + + LT L TL L+ N+ + L++ L+ LYLS NH++
Sbjct: 134 LESLYLGNNKITDITVLSR--LTKLDTLSLEDNQIRRIV--PLARLTKLQNLYLSKNHIS 189
Query: 412 G-EIPRWLGNLSALE 425
R L NL LE
Sbjct: 190 DLRALRGLKNLDVLE 204
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 32 PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLP-WCLANMTSLQVLYASSN 90
P++++L+L + + I L++L +L L + G L+ SLP +T+L+ L N
Sbjct: 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN 119
Query: 91 ELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLM 150
+L +L + L++ +N L+ LT+L LD+S NQL Q++
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFD 178
Query: 151 HLTSIEELILSNNHFFQSP 169
LT +++L L N P
Sbjct: 179 KLTQLKDLRLYQNQLKSVP 197
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 292 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS 351
+P + L L LNL+ N F + L +D+SYNQL +PE + +
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQ 182
Query: 352 LEILALSNNSLQ 363
L+ L L N L+
Sbjct: 183 LKDLRLYQNQLK 194
>pdb|3D3I|A Chain A, Crystal Structural Of Escherichia Coli K12 Ygjk, A
Glucosidase Belonging To Glycoside Hydrolase Family 63
pdb|3D3I|B Chain B, Crystal Structural Of Escherichia Coli K12 Ygjk, A
Glucosidase Belonging To Glycoside Hydrolase Family 63
Length = 761
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 374 TNLMTLQLDGNK-----FTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALED 426
T+L+ ++ NK + GE+LE L EG LSD + GE P + +SA D
Sbjct: 119 TSLLETKITSNKPLDLVWDGELLEKLE---AKEGKPLSDKTIAGEYPDYQRKISATRD 173
>pdb|3C67|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Glucose
pdb|3C67|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Glucose
pdb|3C68|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Mannose
pdb|3C68|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Mannose
pdb|3C69|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Galactose
pdb|3C69|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Galactose
Length = 761
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 374 TNLMTLQLDGNK-----FTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALED 426
T+L+ ++ NK + GE+LE L EG LSD + GE P + +SA D
Sbjct: 119 TSLLETKITSNKPLDLVWDGELLEKLEAK---EGKPLSDKTIAGEYPDYQRKISATRD 173
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 151 HLTSIEELILSN-NH--FFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTF 207
H+ +EE++ + NH ++ EP +L + + A T+S L P +TF
Sbjct: 406 HMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKMVIAHTKS----LDPSRPVTF 461
Query: 208 ISLSGYIDGGTFP--------KFLYHQHDLKNADLSHLNLSGKFPNW 246
+S S Y P + HD + +L L L+ +F NW
Sbjct: 462 VSNSNYAADKGAPYVDVICLNSYYSWYHDYGHLELIQLQLATQFENW 508
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 389 EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL----EGPIPIEFCQ 444
++ E LS L+ LYL+ N+L P +L+AL + + +N L +P
Sbjct: 474 DVFEGLSH---LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA---- 526
Query: 445 LNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIH 490
+L+ILD+S N + P F S+ + +K E L + I+
Sbjct: 527 --NLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFIN 570
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 100/264 (37%), Gaps = 46/264 (17%)
Query: 291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCF 350
HIP ++ + + LNL+ N P++F L +D +N ++ PE +
Sbjct: 18 HIPDDLPS---NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILP 73
Query: 351 SLEILALSNNSLQGHIFSEKFNL-TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNH 409
L++L L +N L I + F TNL L L N L L LS N
Sbjct: 74 LLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 410 L------TGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLP 463
L TG L L ++ I+ + E +EF +SL+ LDLS+N + P
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEE----LEFLGNSSLRKLDLSSNPLKEFSP 188
Query: 464 SCF----------------------------SPASIEQLHLSKNKIEGRLESIIH--DSP 493
CF S SI+ L L+ N++ ES
Sbjct: 189 GCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWT 248
Query: 494 HLVTLDLSCNSLHGSIPNQIGRLP 517
+L LDLS N+LH LP
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLP 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,570,067
Number of Sequences: 62578
Number of extensions: 577373
Number of successful extensions: 1850
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1225
Number of HSP's gapped (non-prelim): 395
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)