Query 042271
Match_columns 517
No_of_seqs 239 out of 3087
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 04:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.4E-53 1.2E-57 454.5 33.4 500 2-512 90-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.6E-52 7.8E-57 448.2 33.3 500 5-516 69-570 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.4E-39 7.5E-44 296.6 6.4 388 34-476 54-446 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.8E-38 8.2E-43 289.8 7.1 396 57-508 53-454 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 5.6E-37 1.2E-41 269.9 -8.7 428 34-506 47-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 4.5E-35 9.9E-40 257.9 -8.1 455 6-483 46-542 (565)
7 KOG0618 Serine/threonine phosp 100.0 7.2E-34 1.6E-38 275.2 -2.5 468 7-504 23-511 (1081)
8 KOG0618 Serine/threonine phosp 100.0 4.4E-33 9.5E-38 269.8 -2.8 462 10-504 3-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 8.9E-33 1.9E-37 256.8 -1.8 386 53-500 4-393 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1E-31 2.2E-36 249.7 -1.3 367 4-435 6-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 8.3E-23 1.8E-27 220.7 29.0 343 47-433 549-904 (1153)
12 KOG4237 Extracellular matrix p 99.9 3.3E-26 7.2E-31 201.9 -1.9 404 31-503 66-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.2E-21 2.5E-26 211.9 26.0 338 27-410 553-905 (1153)
14 KOG4237 Extracellular matrix p 99.9 3.1E-23 6.7E-28 183.2 -1.5 290 6-338 68-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.7E-19 1E-23 178.1 15.1 264 204-513 202-465 (788)
16 cd00116 LRR_RI Leucine-rich re 99.8 2.8E-19 6.1E-24 168.7 7.7 273 232-505 3-319 (319)
17 PRK15387 E3 ubiquitin-protein 99.8 1.6E-17 3.4E-22 167.2 16.4 93 56-164 201-293 (788)
18 PRK15370 E3 ubiquitin-protein 99.7 2.7E-17 5.9E-22 166.5 13.7 247 228-506 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 3.5E-18 7.6E-23 161.2 6.7 251 256-508 2-293 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 3.9E-16 8.4E-21 158.3 13.0 230 252-513 178-407 (754)
21 KOG0617 Ras suppressor protein 99.6 8.9E-17 1.9E-21 126.2 -4.1 159 3-170 31-190 (264)
22 KOG0617 Ras suppressor protein 99.5 3.5E-16 7.5E-21 122.9 -4.0 180 300-485 32-215 (264)
23 KOG1909 Ran GTPase-activating 99.4 3.7E-14 8E-19 124.5 1.6 134 372-505 155-310 (382)
24 KOG3207 Beta-tubulin folding c 99.3 3.9E-13 8.5E-18 121.6 1.0 214 250-463 119-343 (505)
25 KOG1909 Ran GTPase-activating 99.3 9.5E-13 2.1E-17 115.8 0.9 133 349-481 156-310 (382)
26 KOG3207 Beta-tubulin folding c 99.2 5.6E-12 1.2E-16 114.2 3.5 209 274-482 119-339 (505)
27 PF14580 LRR_9: Leucine-rich r 99.2 9.4E-12 2E-16 102.8 3.2 128 29-161 16-148 (175)
28 KOG4658 Apoptotic ATPase [Sign 99.2 1.6E-11 3.5E-16 127.1 5.5 128 6-139 524-653 (889)
29 PF14580 LRR_9: Leucine-rich r 99.1 9.1E-11 2E-15 97.0 6.6 129 274-407 17-149 (175)
30 KOG4658 Apoptotic ATPase [Sign 99.1 3.7E-11 8.1E-16 124.4 4.8 156 29-188 520-677 (889)
31 KOG1259 Nischarin, modulator o 99.1 2E-11 4.4E-16 105.2 2.1 131 372-507 282-413 (490)
32 KOG0532 Leucine-rich repeat (L 99.1 3.3E-12 7.3E-17 119.4 -3.9 176 303-512 77-252 (722)
33 COG4886 Leucine-rich repeat (L 99.1 3.1E-10 6.7E-15 110.2 7.3 201 280-490 97-298 (394)
34 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.6E-15 100.6 1.7 204 270-484 208-414 (490)
35 COG4886 Leucine-rich repeat (L 99.0 9.5E-10 2.1E-14 106.8 8.0 202 256-468 97-299 (394)
36 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 2.9E-14 73.8 4.3 60 446-505 1-61 (61)
37 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.4E-14 73.5 3.7 61 32-92 1-61 (61)
38 PLN03150 hypothetical protein; 98.9 4.5E-09 9.8E-14 106.8 8.4 111 400-510 420-532 (623)
39 PLN03150 hypothetical protein; 98.9 4.8E-09 1E-13 106.6 7.7 107 57-164 419-526 (623)
40 KOG0532 Leucine-rich repeat (L 98.8 2.5E-10 5.5E-15 107.1 -1.7 169 279-458 78-246 (722)
41 KOG2120 SCF ubiquitin ligase, 98.8 3.6E-10 7.8E-15 97.6 -1.4 179 276-456 185-373 (419)
42 KOG2120 SCF ubiquitin ligase, 98.8 2.8E-10 6.1E-15 98.2 -3.0 179 228-408 186-373 (419)
43 KOG4341 F-box protein containi 98.8 5.1E-10 1.1E-14 101.2 -2.6 277 228-504 139-437 (483)
44 KOG4341 F-box protein containi 98.7 7.4E-10 1.6E-14 100.2 -3.3 297 204-500 139-459 (483)
45 KOG0531 Protein phosphatase 1, 98.7 2.5E-09 5.5E-14 103.8 -0.7 245 251-510 71-322 (414)
46 KOG0531 Protein phosphatase 1, 98.6 4.4E-09 9.5E-14 102.2 -2.2 219 273-506 69-290 (414)
47 KOG1859 Leucine-rich repeat pr 98.5 3.7E-09 7.9E-14 102.3 -4.6 195 276-482 84-292 (1096)
48 KOG1859 Leucine-rich repeat pr 98.5 9.1E-09 2E-13 99.6 -3.5 182 220-412 102-293 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.4 1.8E-07 4E-12 80.1 3.4 159 348-506 90-285 (388)
50 KOG3665 ZYG-1-like serine/thre 98.4 1E-07 2.2E-12 96.7 0.9 154 5-161 122-283 (699)
51 COG5238 RNA1 Ran GTPase-activa 98.3 1.7E-07 3.7E-12 80.3 1.3 88 251-338 29-133 (388)
52 KOG2982 Uncharacterized conser 98.3 5E-07 1.1E-11 78.5 3.6 208 301-509 45-265 (418)
53 KOG2982 Uncharacterized conser 98.3 3.3E-07 7.2E-12 79.6 1.9 232 100-382 41-287 (418)
54 KOG1644 U2-associated snRNP A' 98.2 1.9E-06 4.2E-11 70.7 5.2 104 57-162 43-149 (233)
55 PF13306 LRR_5: Leucine rich r 98.1 9.1E-06 2E-10 65.0 7.4 124 368-496 6-129 (129)
56 KOG1947 Leucine rich repeat pr 98.1 5.9E-07 1.3E-11 90.2 0.2 62 300-361 242-306 (482)
57 KOG4579 Leucine-rich repeat (L 98.0 5E-07 1.1E-11 69.1 -1.5 112 399-513 54-166 (177)
58 PF13306 LRR_5: Leucine rich r 98.0 1.4E-05 3E-10 64.0 6.6 122 320-448 7-128 (129)
59 PF12799 LRR_4: Leucine Rich r 98.0 6.7E-06 1.5E-10 50.7 3.4 37 469-506 1-37 (44)
60 KOG1644 U2-associated snRNP A' 98.0 8.3E-06 1.8E-10 67.1 4.8 105 373-479 41-150 (233)
61 KOG4579 Leucine-rich repeat (L 98.0 5.5E-07 1.2E-11 68.9 -1.9 108 33-142 28-137 (177)
62 KOG3665 ZYG-1-like serine/thre 97.9 5.3E-06 1.2E-10 84.4 3.3 61 275-337 147-207 (699)
63 PRK15386 type III secretion pr 97.9 7.2E-05 1.6E-09 70.2 10.2 138 320-480 47-188 (426)
64 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 3.8E-10 48.9 3.6 36 105-141 2-37 (44)
65 PRK15386 type III secretion pr 97.8 6.6E-05 1.4E-09 70.5 8.2 13 252-264 52-64 (426)
66 KOG2123 Uncharacterized conser 97.8 1.3E-06 2.8E-11 75.4 -2.8 101 3-110 17-123 (388)
67 KOG1947 Leucine rich repeat pr 97.7 8.8E-06 1.9E-10 81.7 0.4 175 225-409 186-373 (482)
68 KOG2739 Leucine-rich acidic nu 97.3 4.7E-05 1E-09 65.6 -0.4 82 55-140 42-128 (260)
69 KOG2739 Leucine-rich acidic nu 97.3 9E-05 2E-09 63.9 1.2 108 28-137 39-152 (260)
70 KOG2123 Uncharacterized conser 97.2 4.3E-05 9.3E-10 66.2 -2.2 100 276-380 19-123 (388)
71 PF00560 LRR_1: Leucine Rich R 97.1 0.00017 3.6E-09 36.9 0.6 22 494-516 1-22 (22)
72 KOG4308 LRR-containing protein 96.2 3.3E-05 7.1E-10 75.3 -10.7 84 303-386 89-184 (478)
73 KOG3864 Uncharacterized conser 95.7 0.0014 3.1E-08 54.4 -1.6 82 423-504 102-187 (221)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.0095 2.1E-07 30.3 1.0 18 106-124 2-19 (22)
75 PF13504 LRR_7: Leucine rich r 94.8 0.017 3.6E-07 27.2 1.1 14 493-506 1-14 (17)
76 KOG3864 Uncharacterized conser 93.7 0.009 1.9E-07 49.8 -1.9 82 254-335 103-186 (221)
77 KOG4308 LRR-containing protein 93.1 0.0023 5E-08 62.7 -7.2 187 272-458 111-330 (478)
78 PF13516 LRR_6: Leucine Rich r 91.8 0.011 2.3E-07 30.9 -2.6 16 469-484 2-17 (24)
79 KOG0473 Leucine-rich repeat pr 91.8 0.0061 1.3E-07 51.8 -5.3 92 46-140 32-123 (326)
80 smart00370 LRR Leucine-rich re 90.9 0.22 4.8E-06 26.4 2.0 20 470-489 3-22 (26)
81 smart00369 LRR_TYP Leucine-ric 90.9 0.22 4.8E-06 26.4 2.0 20 470-489 3-22 (26)
82 KOG0473 Leucine-rich repeat pr 89.6 0.0081 1.7E-07 51.1 -6.5 88 27-117 37-124 (326)
83 smart00370 LRR Leucine-rich re 89.3 0.31 6.7E-06 25.8 1.8 17 33-49 3-19 (26)
84 smart00369 LRR_TYP Leucine-ric 89.3 0.31 6.7E-06 25.8 1.8 17 33-49 3-19 (26)
85 smart00364 LRR_BAC Leucine-ric 79.7 1.4 3E-05 23.3 1.4 18 493-511 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 75.7 2.6 5.6E-05 22.4 1.7 15 492-506 1-15 (26)
87 smart00368 LRR_RI Leucine rich 72.4 2.9 6.3E-05 22.6 1.5 13 470-482 3-15 (28)
88 smart00367 LRR_CC Leucine-rich 62.9 5.1 0.00011 21.1 1.3 15 492-506 1-16 (26)
89 KOG4242 Predicted myosin-I-bin 60.8 36 0.00078 33.1 7.1 13 302-314 355-367 (553)
90 KOG4242 Predicted myosin-I-bin 58.5 19 0.00042 34.9 4.9 57 448-504 415-479 (553)
91 KOG3763 mRNA export factor TAP 56.5 6.3 0.00014 38.8 1.6 85 25-109 211-306 (585)
92 KOG3763 mRNA export factor TAP 45.4 18 0.00039 35.8 2.7 37 250-286 216-254 (585)
93 PF05725 FNIP: FNIP Repeat; I 22.6 1.4E+02 0.003 18.1 3.1 9 468-476 33-41 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-53 Score=454.53 Aligned_cols=500 Identities=29% Similarity=0.408 Sum_probs=386.2
Q ss_pred CCCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCC
Q 042271 2 RKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTS 81 (517)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 81 (517)
+.+++|++|++++| .+.+.++...+..+++|++|++++|.+....+ .+.+++|++|++++|.+.+..|..+.++++
T Consensus 90 ~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 90 FRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred hCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCccccccC--ccccCCCCEEECcCCcccccCChHHhcCCC
Confidence 45677777777777 55556665545577777777777665543222 244677777777777777677777777888
Q ss_pred CcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecc
Q 042271 82 LQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILS 161 (517)
Q Consensus 82 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~ 161 (517)
|++|++++|.+.+..|..++++++|++|++++|.+++..|..+.++++|++|++++|.+.+.++. .+..+++|++|+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCCCCEEECc
Confidence 88888887777767777777788888888888877777777777788888888888777655554 67777888888887
Q ss_pred cCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCC
Q 042271 162 NNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG 241 (517)
Q Consensus 162 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 241 (517)
+|.+.. .....+.++++|+.+++............+....+|+.+++++|.+.+.+|.++..+++|+.+++.+|.+.+
T Consensus 245 ~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 245 YNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred Cceecc--ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 776421 112345667777777776654433333334445578888888887777788888888888888888888877
Q ss_pred CCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhh
Q 042271 242 KFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF 321 (517)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 321 (517)
..|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+.++..+
T Consensus 323 ~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 323 KIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred cCChhH-hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHH
Confidence 777664 56788888888888877777777777888888888888887777776665 6788888888888887888888
Q ss_pred hcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCC
Q 042271 322 ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLE 401 (517)
Q Consensus 322 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 401 (517)
..+++|+.|++++|.+.+..|.. +..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..+ ..++|+
T Consensus 401 ~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~ 478 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLE 478 (968)
T ss_pred hCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccce
Confidence 88888888888888888666644 4568888889998888887777777788889999999888876555544 457899
Q ss_pred eEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCc
Q 042271 402 GLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNK 480 (517)
Q Consensus 402 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~ 480 (517)
.|++++|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+. +++|++|++++|.
T Consensus 479 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 999999999888888899999999999999999988898999999999999999999888877766 7899999999999
Q ss_pred CCccchhhhcCCCcccEEECCCCcCCCCCCcc
Q 042271 481 IEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQ 512 (517)
Q Consensus 481 ~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~ 512 (517)
+++.+|..+..+++|+++++++|++++.+|..
T Consensus 559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred ccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 99888999999999999999999999988853
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-52 Score=448.15 Aligned_cols=500 Identities=27% Similarity=0.381 Sum_probs=443.7
Q ss_pred CcCceeeCCCccccccccchhhccCCCCcceEEeccccccC-CcchhhhhhcccCcEEEecCCcccCCccccccCCCCCc
Q 042271 5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKN-TILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ 83 (517)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 83 (517)
.+++.|+++++ .+.+..+.. +..++.|++|++++|.+. .++...+..+++|++|++++|.+.+..|. ..+++|+
T Consensus 69 ~~v~~L~L~~~--~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGK--NISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred CcEEEEEecCC--CccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 47899999999 666766665 889999999999988775 77776677999999999999999877664 4688999
Q ss_pred EEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccC
Q 042271 84 VLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNN 163 (517)
Q Consensus 84 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 163 (517)
+|++++|.+.+..|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++. .+..+++|++|++++|
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYN 222 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCC
Confidence 999999999988999999999999999999999989999999999999999999999776665 7899999999999999
Q ss_pred CCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCC
Q 042271 164 HFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKF 243 (517)
Q Consensus 164 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 243 (517)
.+.. .....+.++++|+.+++..+.........+....+|+.|.+.+|.+.+..|..+..+++|+.|++++|.+.+.+
T Consensus 223 ~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 223 NLSG--EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred ccCC--cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 8532 22245678889999999886554444445566679999999999998889999999999999999999999888
Q ss_pred ChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhc
Q 042271 244 PNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 323 (517)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 323 (517)
|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+.++..+..
T Consensus 301 p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 301 PELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred ChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhC
Confidence 8875 68899999999999998888888899999999999999998888887776 899999999999999889999999
Q ss_pred CCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeE
Q 042271 324 MKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGL 403 (517)
Q Consensus 324 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 403 (517)
+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457 (968)
T ss_pred cCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence 999999999999998777754 4569999999999999998888889999999999999999988888888889999999
Q ss_pred EecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCC
Q 042271 404 YLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIE 482 (517)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~ 482 (517)
++++|.+.+..|..+ ..++|+.|++++|++.+..|..+..+++|+.|++++|++++..+..+. +++|++|++++|.++
T Consensus 458 ~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 458 SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 999999987777655 468999999999999988999999999999999999999888877665 899999999999999
Q ss_pred ccchhhhcCCCcccEEECCCCcCCCCCCccccCC
Q 042271 483 GRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516 (517)
Q Consensus 483 ~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~ 516 (517)
+.+|..|..+++|++|++++|++++.+|..++++
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 570 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570 (968)
T ss_pred ccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence 9999999999999999999999999999988775
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-39 Score=296.60 Aligned_cols=388 Identities=22% Similarity=0.218 Sum_probs=221.6
Q ss_pred ceEEeccccccCCcchhhhhhcc--cCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEc
Q 042271 34 LKFLSLINSSKNTILDQGLRQLV--HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHI 111 (517)
Q Consensus 34 L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L 111 (517)
-+.|+++++.++.+....+..+- .-++|++++|.+..+.+..|.++++|+++++..|.++ .+|...+....|++|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 45566666666665443444433 3344777777777666777777777777777777776 56654444555777777
Q ss_pred cccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccc
Q 042271 112 DNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAE 191 (517)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 191 (517)
.+|.|+.+..+.+..++.|++|||+.|.+.. ++...|..-.++++|++++|+|+...
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~---------------------- 189 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLE---------------------- 189 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccc----------------------
Confidence 7777776666677777777777777777753 55445666667777777777652221
Q ss_pred cccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccc
Q 042271 192 TESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMP 271 (517)
Q Consensus 192 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (517)
...|..+.+|..+.++.|.++ .+|...|.++++|+.|++..|.+....+..
T Consensus 190 ----------------------------~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 190 ----------------------------TGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred ----------------------------cccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhh
Confidence 122334445666666666666 555555566666666666666654444445
Q ss_pred cccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271 272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS 351 (517)
Q Consensus 272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~ 351 (517)
|..+++|+.|.+..|++. .+..+.+..+.++++|+|..|.++..-...+-+++.|+.|+++.|.|. .+....++.+++
T Consensus 241 FqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~Wsftqk 318 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQK 318 (873)
T ss_pred hcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-eeecchhhhccc
Confidence 555556666666655554 444444444555555555555555444444455555555555555554 333333444555
Q ss_pred CcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCcc---chhhcCCCCCcEEE
Q 042271 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEI---PRWLGNLSALEDII 428 (517)
Q Consensus 352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~ 428 (517)
|++|++++|.++..-...|.-+..|++|+++.|.++......|..+++|++|+++.|.+...+ ...|.++++|+.|.
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 555555555555544445555555555555555555444445555555555555555443321 23344555555555
Q ss_pred CCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEc
Q 042271 429 MPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHL 476 (517)
Q Consensus 429 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 476 (517)
+.+|++..+...+|.++++|++|+|.+|.+..+.+.+|....|++|.+
T Consensus 399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred ecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhh
Confidence 555555544444555555555555555555555555555445555544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-38 Score=289.79 Aligned_cols=396 Identities=23% Similarity=0.227 Sum_probs=286.3
Q ss_pred cCcEEEecCCcccCCccccccCC--CCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEe
Q 042271 57 HLQELYIGGYDLRGSLPWCLANM--TSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLD 134 (517)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 134 (517)
+-+.|++++..+..+.-..+... ..-+.|++++|++...-++.|.++++|+++++.+|.++ .+|.......+|+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence 44567777777764433344332 23456899999888777777888999999999988888 6777666666799999
Q ss_pred ccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccc
Q 042271 135 VSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYI 214 (517)
Q Consensus 135 L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 214 (517)
|.+|.|.. +....+..++.|+.||++.|.+...+..
T Consensus 132 L~~N~I~s-v~se~L~~l~alrslDLSrN~is~i~~~------------------------------------------- 167 (873)
T KOG4194|consen 132 LRHNLISS-VTSEELSALPALRSLDLSRNLISEIPKP------------------------------------------- 167 (873)
T ss_pred eecccccc-ccHHHHHhHhhhhhhhhhhchhhcccCC-------------------------------------------
Confidence 99888865 4444778888888888888875332211
Q ss_pred cCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCCh
Q 042271 215 DGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPV 294 (517)
Q Consensus 215 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 294 (517)
.+ ..-.++++|++.+|.++... ..-|..+.+|..|.++.|.++......|..+++|+.|++..|.+. .+..
T Consensus 168 ---sf----p~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ 238 (873)
T KOG4194|consen 168 ---SF----PAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEG 238 (873)
T ss_pred ---CC----CCCCCceEEeeccccccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehh
Confidence 11 12236777777777776332 222456677888888888887777777777888888888888775 4434
Q ss_pred hhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCC
Q 042271 295 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT 374 (517)
Q Consensus 295 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 374 (517)
-.+.++++|+.|.+..|.+......+|-.|.++++|+++.|++. .+...+..++++|+.|++++|.+..+-...++.++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 44556778888888888777666667777888888888888877 66666666688888888888888777777777788
Q ss_pred CCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccc---ccccCCCCccEE
Q 042271 375 NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIP---IEFCQLNSLKIL 451 (517)
Q Consensus 375 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L 451 (517)
+|++|++++|+++...++.|..+..|++|.+++|.+......+|.++.+|++|++++|.++..+. ..|.++++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 88888888888877777778778888888888887776556677778888888888887765443 346777888888
Q ss_pred EccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCC
Q 042271 452 DLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGS 508 (517)
Q Consensus 452 ~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~ 508 (517)
.+.+|++..+...++. ++.||.|++.+|.+..+-+++|..+ .|+.|.++.-.|-+.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD 454 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEe
Confidence 8888887666666665 7888888888888877777788877 788777765555433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.6e-37 Score=269.91 Aligned_cols=428 Identities=23% Similarity=0.305 Sum_probs=234.8
Q ss_pred ceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccc
Q 042271 34 LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN 113 (517)
Q Consensus 34 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 113 (517)
++.+.+++|.+..+.+ .+.++..|.+|++.+|.+. ..|.+++.+..++.++.+.|++. .+|+.++.+++|+++++++
T Consensus 47 l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhccH-hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 4444444444444433 4444444445555444444 34444444444444444444444 4444444444444454444
Q ss_pred cccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccc
Q 042271 114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETE 193 (517)
Q Consensus 114 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 193 (517)
|.+. ..|+.++.+..|+.++..+|++.. .|. ++..+.++..+++.+|.+...+.....
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~------------------- 181 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQISS-LPE-DMVNLSKLSKLDLEGNKLKALPENHIA------------------- 181 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhcccccccc-Cch-HHHHHHHHHHhhccccchhhCCHHHHH-------------------
Confidence 4444 344444444444444444444432 333 344444444444444442221111000
Q ss_pred cccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccc
Q 042271 194 SHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIH 273 (517)
Q Consensus 194 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (517)
+.+|+.++...+.. ..+|..++.+.+|..++++.+.+. .+|+ |.+++.|+++.++.|.+.........
T Consensus 182 --------m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~ 249 (565)
T KOG0472|consen 182 --------MKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLK 249 (565)
T ss_pred --------HHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhc
Confidence 11222222222211 345555666666666666666665 4453 24566666666666665444444444
Q ss_pred cCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhH--------
Q 042271 274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM-------- 345 (517)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~-------- 345 (517)
.++++..||+.+|+++ ++|.++.. +.+|.+|++++|.++ ..|..++.+ +|+.|-+.||.+. .+-..+
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~v 324 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEV 324 (565)
T ss_pred ccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHH
Confidence 5666667777777766 66666665 566777777777666 455566666 6666666666543 110000
Q ss_pred ---------------------------------HhhcCCCcEEEccCCcccccccccccCC--CCCcEEEccCcccc---
Q 042271 346 ---------------------------------AARCFSLEILALSNNSLQGHIFSEKFNL--TNLMTLQLDGNKFT--- 387 (517)
Q Consensus 346 ---------------------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~~~~~--- 387 (517)
.....+.+.|++++-+++......|..- .-....++++|++.
T Consensus 325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elP 404 (565)
T KOG0472|consen 325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELP 404 (565)
T ss_pred HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhh
Confidence 0112234445555444443332222211 12344444444332
Q ss_pred --------------------cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCC
Q 042271 388 --------------------GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNS 447 (517)
Q Consensus 388 --------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 447 (517)
+..+..++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. .+|..++.+..
T Consensus 405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence 244555666777777777777666 66777777777777888777777 56777766666
Q ss_pred ccEEEccCCccccCCCC-CCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271 448 LKILDLSNNSIFRTLPS-CFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506 (517)
Q Consensus 448 L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~ 506 (517)
++.+-.++|++....+. ...+.+|..|++.+|++. .+|..+.+|++|++|++.||||.
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 66666677777555555 333788899999999988 44556899999999999999987
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=4.5e-35 Score=257.91 Aligned_cols=455 Identities=22% Similarity=0.230 Sum_probs=331.4
Q ss_pred cCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEE
Q 042271 6 NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVL 85 (517)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 85 (517)
.+..+.++.| ......+ . +.++..+.+|+++++....+++ +++.+..++.++.++|.+. .+|..+..+..|+.+
T Consensus 46 ~l~~lils~N--~l~~l~~-d-l~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 46 DLQKLILSHN--DLEVLRE-D-LKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKL 119 (565)
T ss_pred chhhhhhccC--chhhccH-h-hhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence 3556777777 4333322 2 6888899999999888888887 8888999999999999888 788889999999999
Q ss_pred EccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCC
Q 042271 86 YASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165 (517)
Q Consensus 86 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 165 (517)
++++|.+. ..++.++.+..|+.++-.+|++. ..|+++..+.+|..+++.+|+++. .++. .-.++.|++|+...|..
T Consensus 120 ~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~-~i~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 120 DCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPEN-HIAMKRLKHLDCNSNLL 195 (565)
T ss_pred hcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHH-HHHHHHHHhcccchhhh
Confidence 99999888 67788899999999999999988 778888888999999999998864 5553 33488899999888875
Q ss_pred CCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCCh
Q 042271 166 FQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPN 245 (517)
Q Consensus 166 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 245 (517)
.+.+. .+..+.+|+.+++..... ..+..+..+..|+++.++.+.+..-..+...+++++..++++++++. +.|+
T Consensus 196 ~tlP~---~lg~l~~L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pd 269 (565)
T KOG0472|consen 196 ETLPP---ELGGLESLELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPD 269 (565)
T ss_pred hcCCh---hhcchhhhHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCch
Confidence 44443 445555566555554322 23345667778889999888775544455568999999999999998 6777
Q ss_pred hhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhc-----cCCCcE----EEccCCc---C
Q 042271 246 WLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTY-----LPGLMD----LNLSRNA---F 313 (517)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~L~~----L~l~~~~---i 313 (517)
.+ .-+.+|.+|++++|.++.. +..++++ +|+.|.+.||.+. .+-+.+.+. ++.|+. =-++... -
T Consensus 270 e~-clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 270 EI-CLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred HH-HHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 65 4678899999999998665 4557777 9999999999875 222222110 111111 0000000 0
Q ss_pred C-C----CCchhhhcCCCCcEEeccccccccccchhHHhhcC--CCcEEEccCCc-----------------------cc
Q 042271 314 N-G----SIPSSFADMKMLERVDISYNQLTGEIPERMAARCF--SLEILALSNNS-----------------------LQ 363 (517)
Q Consensus 314 ~-~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~--~L~~L~l~~n~-----------------------~~ 363 (517)
+ . ........+.+.+.|++++-+++ .+|.+.|.... -....+++.|. ..
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 0 0 00001112234445555555544 44444443221 13344444442 33
Q ss_pred ccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccccccc
Q 042271 364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443 (517)
Q Consensus 364 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 443 (517)
++++..++.+++|..|++++|.+. ..|..++.+..|++|+++.|.+. .+|.++..+..++.+-.++|++....++.+.
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 466667778999999999999987 67788888889999999999998 8899999999999999999999977777799
Q ss_pred CCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCc
Q 042271 444 QLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEG 483 (517)
Q Consensus 444 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (517)
++.+|+.||+.+|.+..+.|..-.+.+|++|++.+|.|..
T Consensus 503 nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence 9999999999999997777777779999999999999983
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=7.2e-34 Score=275.24 Aligned_cols=468 Identities=27% Similarity=0.306 Sum_probs=284.8
Q ss_pred CceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEE
Q 042271 7 LEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLY 86 (517)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 86 (517)
+..|+++.| -+...-.++ ..++.+|++|+++++.+...|. .+..+++|+.|+++.|.+. ..|.+..++.+|+++.
T Consensus 23 ~~~ln~~~N--~~l~~pl~~-~~~~v~L~~l~lsnn~~~~fp~-~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 23 LQILNLRRN--SLLSRPLEF-VEKRVKLKSLDLSNNQISSFPI-QITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLN 97 (1081)
T ss_pred HHhhhcccc--ccccCchHH-hhheeeeEEeeccccccccCCc-hhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhe
Confidence 445555555 322222233 4455557777777777777776 6667777777777777776 5566677777777777
Q ss_pred ccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCC-------------------ccccccCCC
Q 042271 87 ASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDN-------------------QLTQNISSS 147 (517)
Q Consensus 87 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~-------------------~~~~~~~~~ 147 (517)
|.+|... ..|..+..+.+|++|+++.|.+. .+|..+..++.+..+..++| .+.+.+..
T Consensus 98 L~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~- 174 (1081)
T KOG0618|consen 98 LKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI- 174 (1081)
T ss_pred eccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc-
Confidence 7777665 66777777777777777777766 55665655555555555555 33222222
Q ss_pred cccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccC
Q 042271 148 PLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQH 227 (517)
Q Consensus 148 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 227 (517)
++..+++ .|++.+|.+. ...+..+..|+.+........... ...++++.+..++|..+... ......
T Consensus 175 ~i~~l~~--~ldLr~N~~~-----~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~--~~p~p~ 241 (1081)
T KOG0618|consen 175 DIYNLTH--QLDLRYNEME-----VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLD--VHPVPL 241 (1081)
T ss_pred chhhhhe--eeecccchhh-----hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeec--cccccc
Confidence 2222222 3666666532 112333333333332221110000 01114444555544443111 111233
Q ss_pred CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307 (517)
Q Consensus 228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 307 (517)
+++.++++.+.+. .+|.|+ ..+.+|+.+...+|.++. .+..+....+|+.+.+..|.+. .+|..... +..|+.|+
T Consensus 242 nl~~~dis~n~l~-~lp~wi-~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~-~~sL~tLd 316 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWI-GACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEG-LKSLRTLD 316 (1081)
T ss_pred cceeeecchhhhh-cchHHH-HhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccc-cceeeeee
Confidence 4555555555555 344443 455555555555555522 2233334445555555555554 44433332 45555555
Q ss_pred ccCCcCCCCCchhhhcCCC-CcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCccc
Q 042271 308 LSRNAFNGSIPSSFADMKM-LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386 (517)
Q Consensus 308 l~~~~i~~~~~~~~~~l~~-L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~ 386 (517)
+..|.+.......+..... |+.+..+.+.+. ..|..-...++.|+.|.+.+|.+++.....+.++++|+.|++++|++
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 5555555322222222222 344444444443 33322222355688888888988888888888999999999999999
Q ss_pred ccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC
Q 042271 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF 466 (517)
Q Consensus 387 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 466 (517)
..+....+.+++.|++|+++||+++ .+|.....++.|++|...+|.+. ..| .+..+++|+.+|++.|+++.......
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 8767777888999999999999998 78888999999999999999988 567 67788999999999999876655544
Q ss_pred Cc-ccccEEEccCCcCCccchhhhcCCCcccEEECCCCc
Q 042271 467 SP-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNS 504 (517)
Q Consensus 467 ~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~ 504 (517)
.+ ++|++|++++|.=.......|..+.++...++.-++
T Consensus 473 ~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~ 511 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNN 511 (1081)
T ss_pred CCCcccceeeccCCcccccchhhhHHhhhhhheecccCC
Confidence 45 899999999997554566778888888888777663
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=4.4e-33 Score=269.82 Aligned_cols=462 Identities=24% Similarity=0.259 Sum_probs=320.3
Q ss_pred eeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccC
Q 042271 10 LDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS 89 (517)
Q Consensus 10 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 89 (517)
+|++.++ . ..+|.. +-....++.|+++.|..-..|.++..+..+|+.|++++|++. ..|..+..+.+|+.|.++.
T Consensus 3 vd~s~~~--l-~~ip~~-i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 3 VDASDEQ--L-ELIPEQ-ILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSR 77 (1081)
T ss_pred ccccccc--C-cccchh-hccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccch
Confidence 5566552 2 334444 333344999999988888877777888888999999999988 7899999999999999999
Q ss_pred CccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCC-CCCC
Q 042271 90 NELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH-FFQS 168 (517)
Q Consensus 90 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~ 168 (517)
|.|. ..|....++.+|++++|.+|... ..|..+..+++|+.|+++.|++. .+|. .+..++.+..+..++|. +...
T Consensus 78 n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~l 153 (1081)
T KOG0618|consen 78 NYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQRL 153 (1081)
T ss_pred hhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhhh
Confidence 9998 77888999999999999999987 88999999999999999999995 4666 68888888888888882 1111
Q ss_pred CCCcccccCcccccccccccccccccccCCCCCcceee-EeeccccccCCCcccccccc--------------------C
Q 042271 169 PISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLT-FISLSGYIDGGTFPKFLYHQ--------------------H 227 (517)
Q Consensus 169 ~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~--------------------~ 227 (517)
+... .+.+++.............. .++ .+++..+.+. ...+..+ +
T Consensus 154 g~~~--------ik~~~l~~n~l~~~~~~~i~---~l~~~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~~g~ 219 (1081)
T KOG0618|consen 154 GQTS--------IKKLDLRLNVLGGSFLIDIY---NLTHQLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEISGP 219 (1081)
T ss_pred cccc--------chhhhhhhhhcccchhcchh---hhheeeecccchhh---hhhhhhccchhhhhhhhcccceEEecCc
Confidence 1110 12222221111111111111 111 2444444332 1112222 3
Q ss_pred CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307 (517)
Q Consensus 228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 307 (517)
+++.++...|.+....+. ....+++.++++.+.+.... ..+..+.+|+.+....|.++ .+|..++. ..+|+.|.
T Consensus 220 ~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~ 293 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLS 293 (1081)
T ss_pred chheeeeccCcceeeccc---cccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHH
Confidence 444444444444422111 12345566666666555443 45556666666666666664 55555544 45666666
Q ss_pred ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC-CcEEEccCCcccccccccccCCCCCcEEEccCccc
Q 042271 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS-LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKF 386 (517)
Q Consensus 308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~ 386 (517)
...|.+. -++....+.+.|+.|++..|++. ..|+..+.-... ++.++.+.+.+.......-...+.|+.|++.+|.+
T Consensus 294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 6666655 44555566677777777777776 666655554333 66666666666543323333567899999999999
Q ss_pred ccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC
Q 042271 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF 466 (517)
Q Consensus 387 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 466 (517)
++.....+.+..+|+.|++++|.+.......+.++..|+.|++++|++. .+|.++..++.|++|...+|++. ..|...
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~ 449 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELA 449 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhh
Confidence 9888888999999999999999998555577899999999999999999 68899999999999999999984 455666
Q ss_pred CcccccEEEccCCcCCccchhhhcCCCcccEEECCCCc
Q 042271 467 SPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNS 504 (517)
Q Consensus 467 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~ 504 (517)
.+++|+.+|++.|.++-.....-...++|+.||++||.
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 69999999999999975433222333899999999997
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=8.9e-33 Score=256.76 Aligned_cols=386 Identities=27% Similarity=0.320 Sum_probs=310.4
Q ss_pred hhcccCcEEEecCCccc-CCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCc
Q 042271 53 RQLVHLQELYIGGYDLR-GSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLR 131 (517)
Q Consensus 53 ~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 131 (517)
+-++-.|-+|+++|.++ +..|.....++.++.|.|...++. .+|+.++.+.+|++|.+++|+++ .+-..+..++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 45677888999999997 568899999999999999999888 78999999999999999999987 4556688999999
Q ss_pred EEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeecc
Q 042271 132 VLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLS 211 (517)
Q Consensus 132 ~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 211 (517)
.+.+++|++.....+..+..+..|+.|++++|+..
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~--------------------------------------------- 116 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR--------------------------------------------- 116 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh---------------------------------------------
Confidence 99999999876444448889999999999999742
Q ss_pred ccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCccccc
Q 042271 212 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH 291 (517)
Q Consensus 212 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 291 (517)
..|..+....++-.|+++.|++. .+|..++-++..|-.|++++|.+. ..++..+.+..|++|++++|.+. .
T Consensus 117 ------EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-h 187 (1255)
T KOG0444|consen 117 ------EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-H 187 (1255)
T ss_pred ------hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-H
Confidence 33444555566777788888877 677777778888888899988874 44566778889999999998764 2
Q ss_pred CChhhhhccCCCcEEEccCCcCC-CCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccc
Q 042271 292 IPVEIGTYLPGLMDLNLSRNAFN-GSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEK 370 (517)
Q Consensus 292 ~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 370 (517)
..-.....+++|+.|.+++++-+ .-+|.++..+.+|..+|++.|++. .+|+..+ .+++|+.|++++|.++... ...
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~iteL~-~~~ 264 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKITELN-MTE 264 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCceeeee-ccH
Confidence 22222222678888999988655 357889999999999999999998 7776655 4899999999999998533 455
Q ss_pred cCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCC-ccchhhcCCCCCcEEECCCCcccccccccccCCCCcc
Q 042271 371 FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG-EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLK 449 (517)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 449 (517)
....+|++|+++.|+++ ..|.++..++.|+.|...+|++.- .+|+.++.+..|+.+...+|.+. .+|..+.+|+.|+
T Consensus 265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 56789999999999998 789999999999999999998763 57888999999999999999988 8999999999999
Q ss_pred EEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEEC
Q 042271 450 ILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDL 500 (517)
Q Consensus 450 ~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l 500 (517)
.|.|++|.+.. .|.++. ++.|+.|++..|.--..+|.-=..-++|+.-++
T Consensus 343 kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 343 KLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred Hhcccccceee-chhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 99999999855 455554 899999999999744344332222245554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1e-31 Score=249.74 Aligned_cols=367 Identities=24% Similarity=0.271 Sum_probs=277.5
Q ss_pred CCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCc
Q 042271 4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ 83 (517)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 83 (517)
++=+|-.|+++| +++|.........+..++.|.|.......+|. .++.+.+|++|.+++|++. .+-+.+..++.|+
T Consensus 6 LpFVrGvDfsgN--DFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPe-EL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGN--DFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPE-ELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCC--cCCCCcCchhHHHhhheeEEEechhhhhhChH-HHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 566788999999 88855444448999999999999999999997 8999999999999999998 5677789999999
Q ss_pred EEEccCCccC-CCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeeccc
Q 042271 84 VLYASSNELT-GNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN 162 (517)
Q Consensus 84 ~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~ 162 (517)
.+.++.|.+. ..+|..+-++..|+.|||++|+++ ..|..+..-+++-.|+|++|+|. .+|...+.+++.|-.|++++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence 9999998775 457888999999999999999998 78999999999999999999995 58887889999999999999
Q ss_pred CCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCC
Q 042271 163 NHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGK 242 (517)
Q Consensus 163 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 242 (517)
|+.. .+|..+.++..|+.|.+++|.+.-.
T Consensus 160 NrLe---------------------------------------------------~LPPQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 160 NRLE---------------------------------------------------MLPPQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred chhh---------------------------------------------------hcCHHHHHHhhhhhhhcCCChhhHH
Confidence 9841 2344444555555555555543311
Q ss_pred CChhhhhcccccceEeccCCccC-CCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhh
Q 042271 243 FPNWLVENNANLERLLLADNSLF-GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF 321 (517)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 321 (517)
-...+ -.+.+|+.|.+++.+-+ ..++..+..+.+|..++++.|.+. .+|...+. +++|+.|++++|.++ ......
T Consensus 189 QLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~it-eL~~~~ 264 (1255)
T KOG0444|consen 189 QLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKIT-ELNMTE 264 (1255)
T ss_pred HHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCcee-eeeccH
Confidence 00000 12345566666665432 344556666777777778777776 77777766 778888888888777 333344
Q ss_pred hcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccc-cccccccCCCCCcEEEccCcccccccchhhhhcccC
Q 042271 322 ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQG-HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLL 400 (517)
Q Consensus 322 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 400 (517)
..-.+|+.|++++|.++ .+|..... +++|+.|.+.+|+++- -++..++.+.+|+.+...+|.+. ..|+.+++|+.|
T Consensus 265 ~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred HHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence 55567777888888777 66666554 7777777777777763 35566777777888888877776 677888888888
Q ss_pred CeEEecCCCCCCccchhhcCCCCCcEEECCCCccc
Q 042271 401 EGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE 435 (517)
Q Consensus 401 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 435 (517)
+.|.++.|.+. .+|+++.-++.|+.|++.+|.-.
T Consensus 342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 88888888777 67777777888888888777654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=8.3e-23 Score=220.74 Aligned_cols=343 Identities=20% Similarity=0.157 Sum_probs=162.2
Q ss_pred cchhhhhhcccCcEEEecCCcc------cCCccccccCC-CCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCc
Q 042271 47 ILDQGLRQLVHLQELYIGGYDL------RGSLPWCLANM-TSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGS 119 (517)
Q Consensus 47 ~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 119 (517)
+...+|.++++|+.|.+..+.. ...+|..+..+ .+|+.|.+.++.+. .+|..+ ...+|++|+++++.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 3445666677777776654421 11244444444 34666666666555 455544 3466666666666665 4
Q ss_pred ccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCC
Q 042271 120 LPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSL 199 (517)
Q Consensus 120 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~ 199 (517)
++..+..+++|+.|+++++.....++ .+..+++|++|++++|.... .. ...+.
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~-~l-p~si~----------------------- 678 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLV-EL-PSSIQ----------------------- 678 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCcc-cc-chhhh-----------------------
Confidence 55556666666666666654333333 25556666666666654110 00 00111
Q ss_pred CCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCccc
Q 042271 200 TPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLA 279 (517)
Q Consensus 200 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 279 (517)
...+|+.+++.+|.....+|..+ .+++|+.|++++|.....+|. ...+|+.|+++++.+.... . ...+++|+
T Consensus 679 -~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP-~-~~~l~~L~ 750 (1153)
T PLN03210 679 -YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFP-S-NLRLENLD 750 (1153)
T ss_pred -ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccc-c-cccccccc
Confidence 11234444444443333333332 455566666666544433332 1245556666555543221 1 11344555
Q ss_pred EEEccCCccc---c---cCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCc
Q 042271 280 TLDVSNNFFR---G---HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE 353 (517)
Q Consensus 280 ~L~l~~~~~~---~---~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 353 (517)
+|.+.++... + .++......+++|+.|++++|.....+|..+..+++|+.|++++|.....+|... .+++|+
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~ 828 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLE 828 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccC
Confidence 5555443211 0 0111111123455555555554444455555555555555555554333444332 345555
Q ss_pred EEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCc
Q 042271 354 ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNN 433 (517)
Q Consensus 354 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (517)
.|++++|......+. ..++|+.|++++|.+. ..|..+..+++|+.|++++|.-...+|.....+++|+.+++++|.
T Consensus 829 ~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 829 SLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EEECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 555555432221111 1234555555555554 334444555555555555543322344444445555555555543
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=3.3e-26 Score=201.86 Aligned_cols=404 Identities=21% Similarity=0.179 Sum_probs=250.6
Q ss_pred CCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccC-CccCCCCCcchhccccCcEE
Q 042271 31 KPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASS-NELTGNISPGLCELVLMREL 109 (517)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L 109 (517)
.+...+++|..|.|..+|+++|+.+++||.|||++|.|+.+-|++|.+++.|-.|-+.+ |+|+......|+.+..|+-|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999998888777 89995555678999999999
Q ss_pred EccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccc
Q 042271 110 HIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEIC 189 (517)
Q Consensus 110 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~ 189 (517)
.+..|++..+..++|..+++|..|.+.+|.+. .+....+..+..++.+.+..|++ .. ..+++++.......
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~-ic------dCnL~wla~~~a~~- 216 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF-IC------DCNLPWLADDLAMN- 216 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc-cc------ccccchhhhHHhhc-
Confidence 99999999888899999999999999999985 46666889999999999998872 22 22333222111000
Q ss_pred cccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcc
Q 042271 190 AETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW 269 (517)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 269 (517)
+..++......-..+...++...-+..+......+.+-.-
T Consensus 217 ------------------------------~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~---------- 256 (498)
T KOG4237|consen 217 ------------------------------PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLS---------- 256 (498)
T ss_pred ------------------------------hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhc----------
Confidence 0000111111111112222221222221111111111000
Q ss_pred cccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhc
Q 042271 270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARC 349 (517)
Q Consensus 270 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~ 349 (517)
+.+..-+..|..-+..+++|++|++++|.++.+-..+|.+...+++|.+.+|++. .+...+|.++
T Consensus 257 --------------~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~l 321 (498)
T KOG4237|consen 257 --------------SEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGL 321 (498)
T ss_pred --------------cccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhcc
Confidence 1111112334444444666666666666666555556666666666666666665 5555666666
Q ss_pred CCCcEEEccCCcccccccccccCCCCCcEEEccCccccc-----ccchh-----------hhhcccCCeEEecCCCCCC-
Q 042271 350 FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG-----EILES-----------LSKCYLLEGLYLSDNHLTG- 412 (517)
Q Consensus 350 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-----------~~~~~~L~~L~l~~~~~~~- 412 (517)
..|+.|++++|+++...+.+|.....|.+|++-.|+..- ...+. -.....++.+.+++..+.+
T Consensus 322 s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~ 401 (498)
T KOG4237|consen 322 SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDF 401 (498)
T ss_pred ccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcccccc
Confidence 666666666666666666666666666666665554320 00000 0112346666666654432
Q ss_pred --ccc---------hhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcC
Q 042271 413 --EIP---------RWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKI 481 (517)
Q Consensus 413 --~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~ 481 (517)
..| ..-..++-+.++.=..++..+.+|..+- ..-.++++.+|.++..... ...+| .+++++|++
T Consensus 402 ~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i 476 (498)
T KOG4237|consen 402 RCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRI 476 (498)
T ss_pred ccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccCHH--HHhhh-hcccccCce
Confidence 111 1122234444433333444434554432 2567788888887554443 35777 888888888
Q ss_pred CccchhhhcCCCcccEEECCCC
Q 042271 482 EGRLESIIHDSPHLVTLDLSCN 503 (517)
Q Consensus 482 ~~~~~~~l~~~~~L~~l~l~~n 503 (517)
....-..|.+++.|.+|-|++|
T Consensus 477 ~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 477 SSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ehhhcccccchhhhheeEEecC
Confidence 8666678888888888888876
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.2e-21 Score=211.88 Aligned_cols=338 Identities=21% Similarity=0.225 Sum_probs=248.1
Q ss_pred ccCCCCcceEEecccccc-------CCcchhhhhhc-ccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCc
Q 042271 27 VGESKPSLKFLSLINSSK-------NTILDQGLRQL-VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISP 98 (517)
Q Consensus 27 ~~~~~~~L~~L~l~~~~~-------~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 98 (517)
.+..+++|+.|.+..+.. ..++. .+..+ .+||.|++.++.+. .+|..+ ...+|++|+++++.+. .++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 378889999998874432 12333 45555 46999999998887 666666 5689999999999887 6777
Q ss_pred chhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCc
Q 042271 99 GLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178 (517)
Q Consensus 99 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 178 (517)
.+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|. .+..+++|+.|++++|.. ....+.
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~-L~~Lp~------ 699 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCEN-LEILPT------ 699 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCC-cCccCC------
Confidence 788899999999998765445664 78889999999999876555665 688899999999998752 111100
Q ss_pred ccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEe
Q 042271 179 SKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLL 258 (517)
Q Consensus 179 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 258 (517)
.....+|+.|.+.+|.....+|.. ..+|+.|+++++.+. .+|..+ .+++|++|.
T Consensus 700 --------------------~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~ 753 (1153)
T PLN03210 700 --------------------GINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELI 753 (1153)
T ss_pred --------------------cCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--ccccccccc
Confidence 001236667777777555555543 457889999999876 566543 578888888
Q ss_pred ccCCccCC-------CcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEe
Q 042271 259 LADNSLFG-------SFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD 331 (517)
Q Consensus 259 l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 331 (517)
+.++.... ........+++|+.|++++|.....+|..+.. +++|+.|++++|...+.+|..+ .+++|+.|+
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~ 831 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI-NLESLESLD 831 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence 87643211 11112234578999999999766688888776 9999999999996544566555 689999999
Q ss_pred ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCC
Q 042271 332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHL 410 (517)
Q Consensus 332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 410 (517)
+++|.....+|.. .++|+.|++++|.++. ++..+..+++|+.|++++|.-....+..+..+++|+.+++++|.-
T Consensus 832 Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 832 LSGCSRLRTFPDI----STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCcccccccc----ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 9999765455532 4689999999999874 456788999999999999764445666778889999999999953
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=3.1e-23 Score=183.25 Aligned_cols=290 Identities=16% Similarity=0.139 Sum_probs=201.9
Q ss_pred cCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecC-CcccCCccccccCCCCCcE
Q 042271 6 NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGG-YDLRGSLPWCLANMTSLQV 84 (517)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~ 84 (517)
.-.++.|-.|+| ..+|..+++.+++||+|||++|.|+.|.+++|.+++.|..|.+.+ |+|+...-+.|+++..|+.
T Consensus 68 ~tveirLdqN~I---~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQNQI---SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccCCc---ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 445678888844 466777799999999999999999999999999999999998877 8999777789999999999
Q ss_pred EEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCC
Q 042271 85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH 164 (517)
Q Consensus 85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 164 (517)
|.+..|++.-.....|..+++|..|.+..|.+..+.-..|..+..++++.+..|.+.. .-+++.+.... .-++
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~~-a~~~ 217 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADDL-AMNP 217 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc------ccccchhhhHH-hhch
Confidence 9999999886666789999999999999999985544589999999999999887532 12223222221 1111
Q ss_pred CCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccc-cccCCcCEeeccCCcCCCCC
Q 042271 165 FFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFL-YHQHDLKNADLSHLNLSGKF 243 (517)
Q Consensus 165 ~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~ 243 (517)
+.. .+..... -..+.. ..+...-++.+ .....+.+--...+...+..
T Consensus 218 iet-----sgarc~~---p~rl~~------------------------~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c 265 (498)
T KOG4237|consen 218 IET-----SGARCVS---PYRLYY------------------------KRINQEDARKFLCSLESLPSRLSSEDFPDSIC 265 (498)
T ss_pred hhc-----ccceecc---hHHHHH------------------------HHhcccchhhhhhhHHhHHHhhccccCcCCcC
Confidence 111 1111100 000000 00000000000 01111111112233344456
Q ss_pred ChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhc
Q 042271 244 PNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 323 (517)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 323 (517)
|..-+..+++|+++++++|+++.+...+|....++++|.+..|++. .+...++..+..|+.|++.+|+|+...|.+|..
T Consensus 266 P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred hHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence 6666777888888888888888777777888888888888888886 667777777888888888888888777778888
Q ss_pred CCCCcEEeccccccc
Q 042271 324 MKMLERVDISYNQLT 338 (517)
Q Consensus 324 l~~L~~L~l~~~~i~ 338 (517)
...|.+|.+-.|...
T Consensus 345 ~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPFN 359 (498)
T ss_pred cceeeeeehccCccc
Confidence 888888888777554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=4.7e-19 Score=178.06 Aligned_cols=264 Identities=23% Similarity=0.283 Sum_probs=201.8
Q ss_pred eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271 204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV 283 (517)
Q Consensus 204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (517)
+-..|+++.+.+. .+|..+. ++++.|.+.+|+++ .+|. ..++|++|++++|.++.... ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC----cccccceeec
Confidence 3456777777665 4666554 47899999999888 4554 35889999999998875431 2468999999
Q ss_pred cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc
Q 042271 284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363 (517)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~ 363 (517)
++|.+. .+|. .+++|+.|++++|.++. +|. ..++|+.|++++|.+. .+|. ...+|+.|++++|.++
T Consensus 270 s~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 270 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT 335 (788)
T ss_pred cCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCC----CcccccccccccCccc
Confidence 999886 5554 24689999999999883 443 3578999999999988 5554 1347889999999887
Q ss_pred ccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccccccc
Q 042271 364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443 (517)
Q Consensus 364 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 443 (517)
... . ..++|+.|++++|++.. .|.. .++|+.|++++|++. .+|.. ..+|+.|++++|.+.. +|..
T Consensus 336 ~LP-~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l-- 400 (788)
T PRK15387 336 SLP-T---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL-- 400 (788)
T ss_pred ccc-c---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc--
Confidence 532 1 23589999999999984 3332 357899999999998 45543 3679999999999984 5533
Q ss_pred CCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccc
Q 042271 444 QLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513 (517)
Q Consensus 444 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~ 513 (517)
.++|+.|++++|+++. .|.. +.+|+.|++++|+++ .+|..+.++++|+.|++++|++++.+|..+
T Consensus 401 -~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 -PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 3689999999999965 3432 468999999999998 457778899999999999999999888766
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2.8e-19 Score=168.70 Aligned_cols=273 Identities=24% Similarity=0.187 Sum_probs=168.0
Q ss_pred eeccCCcCCCCCChhhhhcccccceEeccCCccCCC----cccccccCCcccEEEccCCcccc------cCChhhhhccC
Q 042271 232 ADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS----FWMPIHSHQKLATLDVSNNFFRG------HIPVEIGTYLP 301 (517)
Q Consensus 232 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~ 301 (517)
|++..+.+.+.....++..+..+++++++++.+.+. +...+...+.+++++++++.+.+ .++..+.. ++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cC
Confidence 344444444333333344555677777776665332 22234455567777777665541 11122223 66
Q ss_pred CCcEEEccCCcCCCCCchhhhcCCC---CcEEeccccccccccchh---HHhhc-CCCcEEEccCCccccc----ccccc
Q 042271 302 GLMDLNLSRNAFNGSIPSSFADMKM---LERVDISYNQLTGEIPER---MAARC-FSLEILALSNNSLQGH----IFSEK 370 (517)
Q Consensus 302 ~L~~L~l~~~~i~~~~~~~~~~l~~---L~~L~l~~~~i~~~~~~~---~~~~~-~~L~~L~l~~n~~~~~----~~~~~ 370 (517)
+|+.|++++|.+.+..+..+..+.. |++|++++|.+.+..... ....+ ++|+.|++++|.+++. ....+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888776545555554444 888888888776322211 22234 6788888888877632 22345
Q ss_pred cCCCCCcEEEccCccccccc----chhhhhcccCCeEEecCCCCCCc----cchhhcCCCCCcEEECCCCcccccccccc
Q 042271 371 FNLTNLMTLQLDGNKFTGEI----LESLSKCYLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMPNNNLEGPIPIEF 442 (517)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 442 (517)
..++.|++|++++|.+.+.. ...+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 56678888888888876422 22344556888888888887643 33456667888888888888765222222
Q ss_pred c-----CCCCccEEEccCCccccCCCCCC-----CcccccEEEccCCcCCcc----chhhhcCC-CcccEEECCCCcC
Q 042271 443 C-----QLNSLKILDLSNNSIFRTLPSCF-----SPASIEQLHLSKNKIEGR----LESIIHDS-PHLVTLDLSCNSL 505 (517)
Q Consensus 443 ~-----~~~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~l~~~-~~L~~l~l~~n~~ 505 (517)
. ..++|++|++++|.+++.....+ ..++|+.+++++|.++.. ...++... +.|+++++.+|++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 24789999999988863222111 147889999999998855 44555555 7899999988875
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=1.6e-17 Score=167.22 Aligned_cols=93 Identities=27% Similarity=0.369 Sum_probs=47.0
Q ss_pred ccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEec
Q 042271 56 VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135 (517)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 135 (517)
..-..|+++++.++ .+|..+. ++|+.|+++.|.++ .+|.. .++|++|++++|.++ .+|.. .++|++|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 34455666666665 4444443 25666666666665 34431 355666666666655 23321 245556666
Q ss_pred cCCccccccCCCcccCCCCCceeecccCC
Q 042271 136 SDNQLTQNISSSPLMHLTSIEELILSNNH 164 (517)
Q Consensus 136 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 164 (517)
++|.+.. ++. ..++|+.|++++|.
T Consensus 270 s~N~L~~-Lp~----lp~~L~~L~Ls~N~ 293 (788)
T PRK15387 270 FSNPLTH-LPA----LPSGLCKLWIFGNQ 293 (788)
T ss_pred cCCchhh-hhh----chhhcCEEECcCCc
Confidence 6655532 222 11345555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=2.7e-17 Score=166.54 Aligned_cols=247 Identities=21% Similarity=0.331 Sum_probs=137.8
Q ss_pred CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307 (517)
Q Consensus 228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 307 (517)
+...+++.+..++ .+|..+ .+.++.|++++|.+..... .+ +++|+.|++++|.++ .+|..+ .++|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLT-SIPATL---PDTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCccc-cCChhh---hccccEEE
Confidence 3445556555555 344322 2456666666666554322 11 246666666666665 555443 23566677
Q ss_pred ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT 387 (517)
Q Consensus 308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (517)
+++|.+. .+|..+. .+|+.|++++|++. .+|..+ +++|+.|++++|.++... ..+ .++|+.|++++|.+.
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccc
Confidence 7766665 3444332 45666777766665 455433 236667777776665422 111 235666677766665
Q ss_pred cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC
Q 042271 388 GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS 467 (517)
Q Consensus 388 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 467 (517)
. .+..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|+++...+..
T Consensus 318 ~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l-- 386 (754)
T PRK15370 318 A-LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENL-- 386 (754)
T ss_pred c-CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhH--
Confidence 3 22222 246777777777666 3444332 56777777777666 344444 246777777777765433221
Q ss_pred cccccEEEccCCcCCcc---chhhhcCCCcccEEECCCCcCC
Q 042271 468 PASIEQLHLSKNKIEGR---LESIIHDSPHLVTLDLSCNSLH 506 (517)
Q Consensus 468 ~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~l~l~~n~~~ 506 (517)
..+|+.|++++|+++.. ++..+..++.+..+++.+|+++
T Consensus 387 ~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 34677777777776643 2233444566777777777764
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=3.5e-18 Score=161.24 Aligned_cols=251 Identities=24% Similarity=0.261 Sum_probs=182.6
Q ss_pred eEeccCCccCC-CcccccccCCcccEEEccCCccccc----CChhhhhccCCCcEEEccCCcCCC------CCchhhhcC
Q 042271 256 RLLLADNSLFG-SFWMPIHSHQKLATLDVSNNFFRGH----IPVEIGTYLPGLMDLNLSRNAFNG------SIPSSFADM 324 (517)
Q Consensus 256 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~------~~~~~~~~l 324 (517)
.|++..+.+.+ .....+..+..|+.++++++.+++. ++.... ..+++++++++++.+.. .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 35666666653 2334456677899999999988532 222222 36779999999998762 133567778
Q ss_pred CCCcEEeccccccccccchhHHhhcCC---CcEEEccCCccccc----ccccccCC-CCCcEEEccCcccccc----cch
Q 042271 325 KMLERVDISYNQLTGEIPERMAARCFS---LEILALSNNSLQGH----IFSEKFNL-TNLMTLQLDGNKFTGE----ILE 392 (517)
Q Consensus 325 ~~L~~L~l~~~~i~~~~~~~~~~~~~~---L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~----~~~ 392 (517)
++|++|++++|.+.+..+.. +..+.+ |+.|++++|.+++. ....+..+ ++|++|++++|.++.. ...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 99999999999987444333 333444 99999999988742 22344566 8999999999998732 334
Q ss_pred hhhhcccCCeEEecCCCCCCc----cchhhcCCCCCcEEECCCCccccc----ccccccCCCCccEEEccCCccccCCCC
Q 042271 393 SLSKCYLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMPNNNLEGP----IPIEFCQLNSLKILDLSNNSIFRTLPS 464 (517)
Q Consensus 393 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~ 464 (517)
.+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+.+. +...+..+++|++|++++|++++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 566778999999999998842 334456668999999999998643 344567789999999999998753222
Q ss_pred CCC------cccccEEEccCCcCCc----cchhhhcCCCcccEEECCCCcCCCC
Q 042271 465 CFS------PASIEQLHLSKNKIEG----RLESIIHDSPHLVTLDLSCNSLHGS 508 (517)
Q Consensus 465 ~~~------~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~l~l~~n~~~~~ 508 (517)
.+. .+.|++|++++|.++. .....+..+++|+.+++++|.++..
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 221 3799999999999973 2456777779999999999999743
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=3.9e-16 Score=158.28 Aligned_cols=230 Identities=26% Similarity=0.373 Sum_probs=177.4
Q ss_pred cccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEe
Q 042271 252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD 331 (517)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 331 (517)
.+...|++++..++.... .+ .+.++.|++++|.++ .+|...+ ++|++|++++|.++ .+|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~-~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA-CI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCcCCc-cc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 456788898887765432 22 357999999999998 7787654 58999999999998 4555443 5799999
Q ss_pred ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271 332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411 (517)
Q Consensus 332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 411 (517)
+++|.+. .+|..+. ++|+.|++++|.+.. ++..+ +++|+.|++++|.++. .+..+. ++|+.|++++|.+.
T Consensus 248 Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccC-cCChhHh---CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 9999998 7777653 489999999999885 33333 3689999999999984 443332 47999999999998
Q ss_pred CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcC
Q 042271 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHD 491 (517)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 491 (517)
.+|..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|+++. .+..+ +++|++|++++|.++..++...
T Consensus 318 -~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~l-p~~L~~LdLs~N~Lt~LP~~l~-- 387 (754)
T PRK15370 318 -ALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPETL-PPTITTLDVSRNALTNLPENLP-- 387 (754)
T ss_pred -cCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChhh-cCCcCEEECCCCcCCCCCHhHH--
Confidence 455443 3789999999999984 66555 3799999999999964 34333 5799999999999996655433
Q ss_pred CCcccEEECCCCcCCCCCCccc
Q 042271 492 SPHLVTLDLSCNSLHGSIPNQI 513 (517)
Q Consensus 492 ~~~L~~l~l~~n~~~~~~~~~~ 513 (517)
++|+.|++++|+++ .+|.++
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhH
Confidence 37999999999998 666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=8.9e-17 Score=126.21 Aligned_cols=159 Identities=23% Similarity=0.358 Sum_probs=113.2
Q ss_pred CCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCC
Q 042271 3 KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSL 82 (517)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 82 (517)
.+.+++.|.+|.|. ++ .++.- ++.+.+|+.|++++|.++.+|. .++.++.||.|+++.|++. ++|..|+.++.|
T Consensus 31 ~~s~ITrLtLSHNK--l~-~vppn-ia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK--LT-VVPPN-IAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCc--ee-ecCCc-HHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 34566777777773 32 23333 6777777888888777777776 7777778888888777776 777777778888
Q ss_pred cEEEccCCccC-CCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecc
Q 042271 83 QVLYASSNELT-GNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILS 161 (517)
Q Consensus 83 ~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~ 161 (517)
+.||+.+|.+. ..+|..|..+..|+-|.++.|.++ .+|..++++++|+.|.+++|.+.. .|. .+..++.|++|.+.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpk-eig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPK-EIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcH-HHHHHHHHHHHhcc
Confidence 88888777665 345566777777777777777777 677777888888888888777753 554 67777778888888
Q ss_pred cCCCCCCCC
Q 042271 162 NNHFFQSPI 170 (517)
Q Consensus 162 ~~~~~~~~~ 170 (517)
+|+....+.
T Consensus 182 gnrl~vlpp 190 (264)
T KOG0617|consen 182 GNRLTVLPP 190 (264)
T ss_pred cceeeecCh
Confidence 777544433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=3.5e-16 Score=122.91 Aligned_cols=180 Identities=24% Similarity=0.367 Sum_probs=133.3
Q ss_pred cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL 379 (517)
Q Consensus 300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 379 (517)
+..++.|.+++|.++ .+|..+..+.+|+.|++.+|.+. ++|..+.+ +++|+.|++.-|.+. ..+..|+.+|.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhhh
Confidence 456677777777776 55566777777777777777776 66665544 777777777776654 456778888888888
Q ss_pred EccCccccc-ccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcc
Q 042271 380 QLDGNKFTG-EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458 (517)
Q Consensus 380 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 458 (517)
++.+|.+.. ..|..|..+..|+.|++++|++. .+|...+.+.+|+.|.+++|.+. .+|..+..+.+|++|++.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 888887743 46777778888999999999998 78888899999999999999888 6888888999999999999998
Q ss_pred ccCCCCCCC---cccccEEEccCCcCCccc
Q 042271 459 FRTLPSCFS---PASIEQLHLSKNKIEGRL 485 (517)
Q Consensus 459 ~~~~~~~~~---~~~L~~L~l~~n~~~~~~ 485 (517)
+-..|.... ..+=+++.+.+|.....+
T Consensus 186 ~vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 186 TVLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred eecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 665555433 123334445555544333
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.42 E-value=3.7e-14 Score=124.53 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=88.8
Q ss_pred CCCCCcEEEccCcccccc----cchhhhhcccCCeEEecCCCCCC----ccchhhcCCCCCcEEECCCCcccc----ccc
Q 042271 372 NLTNLMTLQLDGNKFTGE----ILESLSKCYLLEGLYLSDNHLTG----EIPRWLGNLSALEDIIMPNNNLEG----PIP 439 (517)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~ 439 (517)
.-+.|+++....|++.+. ....+..++.|+.+.+..|.|.. .....+..+++|+.|++.+|-+.. .+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 456666776666665432 22345556677777777776543 233556677777777777776643 234
Q ss_pred ccccCCCCccEEEccCCccccCCCCCCC------cccccEEEccCCcCCcc----chhhhcCCCcccEEECCCCcC
Q 042271 440 IEFCQLNSLKILDLSNNSIFRTLPSCFS------PASIEQLHLSKNKIEGR----LESIIHDSPHLVTLDLSCNSL 505 (517)
Q Consensus 440 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~------~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~l~l~~n~~ 505 (517)
.++..+++|++|++++|.+......++. .++|++|.+.+|.++.. +.......|.|+.|+|++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4566677888888888887665544443 57888888888888643 344555678888888888887
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.9e-13 Score=121.56 Aligned_cols=214 Identities=22% Similarity=0.188 Sum_probs=111.0
Q ss_pred cccccceEeccCCccCCCcc-cccccCCcccEEEccCCcccccCC-hhhhhccCCCcEEEccCCcCCCCCch-hhhcCCC
Q 042271 250 NNANLERLLLADNSLFGSFW-MPIHSHQKLATLDVSNNFFRGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKM 326 (517)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~~l~~ 326 (517)
++.+|+++.++++.+..... .....|++++.|+++.|-+....+ ..+...+|+|+.|+++.|.+...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 44566666776665533221 244566777777777765542211 23444567777777777765421111 1124456
Q ss_pred CcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCccccccc-chhhhhcccCCeEEe
Q 042271 327 LERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEI-LESLSKCYLLEGLYL 405 (517)
Q Consensus 327 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 405 (517)
|+.|.++.|.++..-.......+|+|+.|.+.+|.....-.....-+..|++|+|++|.+-+.. .-....++.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 6666676666653222333445666666666666422222222334566666666666654221 123445666666666
Q ss_pred cCCCCCCc-cchh-----hcCCCCCcEEECCCCccccc-ccccccCCCCccEEEccCCccccCCC
Q 042271 406 SDNHLTGE-IPRW-----LGNLSALEDIIMPNNNLEGP-IPIEFCQLNSLKILDLSNNSIFRTLP 463 (517)
Q Consensus 406 ~~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~ 463 (517)
+.+.+... .|.+ ...+++|+.|++..|++.+. .-..+..+++|+++.+-.|.++.+..
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 66665531 1221 24456666666666666421 11234445566666666666544444
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=9.5e-13 Score=115.80 Aligned_cols=133 Identities=25% Similarity=0.313 Sum_probs=76.2
Q ss_pred cCCCcEEEccCCcccccc----cccccCCCCCcEEEccCccccc----ccchhhhhcccCCeEEecCCCCCC----ccch
Q 042271 349 CFSLEILALSNNSLQGHI----FSEKFNLTNLMTLQLDGNKFTG----EILESLSKCYLLEGLYLSDNHLTG----EIPR 416 (517)
Q Consensus 349 ~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~~ 416 (517)
-+.|+.+...+|.+.+.. ...+...+.|+.+.+..|.|.. .....+..|++|+.|++.+|-++. .+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 345666666666654322 2234455666666666666542 123455667777777777776553 2345
Q ss_pred hhcCCCCCcEEECCCCcccccccccc-----cCCCCccEEEccCCccccCCCCCCC-----cccccEEEccCCcC
Q 042271 417 WLGNLSALEDIIMPNNNLEGPIPIEF-----CQLNSLKILDLSNNSIFRTLPSCFS-----PASIEQLHLSKNKI 481 (517)
Q Consensus 417 ~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~L~~L~l~~n~~ 481 (517)
.+..+++|+.+++.+|.+...-..+| ...|+|+.+.+.+|.++........ -+.|++|++++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 56666677777777776653222221 2356777777777766543322221 46777777777776
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.6e-12 Score=114.22 Aligned_cols=209 Identities=22% Similarity=0.225 Sum_probs=102.3
Q ss_pred cCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCC--CCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271 274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNG--SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS 351 (517)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~ 351 (517)
.+++|+.+.+.++.+...........||+++.|++++|-+.. .+......+|+|+.|+++.|.+........-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 445666666666665422111233346666666666665442 233344556666666666666543322222223456
Q ss_pred CcEEEccCCcccc-cccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCcc-chhhcCCCCCcEEEC
Q 042271 352 LEILALSNNSLQG-HIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEI-PRWLGNLSALEDIIM 429 (517)
Q Consensus 352 L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 429 (517)
|+.|.++.|.++. .+......+|+|+.|++.+|............+..|++|+|++|.+.... ......++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 6666666666552 12233345666666666666321111222233445666666666554211 133445566666666
Q ss_pred CCCcccccc-ccc-----ccCCCCccEEEccCCccccCC--CCCCCcccccEEEccCCcCC
Q 042271 430 PNNNLEGPI-PIE-----FCQLNSLKILDLSNNSIFRTL--PSCFSPASIEQLHLSKNKIE 482 (517)
Q Consensus 430 ~~~~~~~~~-~~~-----~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~~~ 482 (517)
+.|.+...- |+. ....++|+.|++..|++.++. .....+.+|+.|.+..|+++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 666554321 111 233455666666666553321 12222455555555555554
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=9.4e-12 Score=102.81 Aligned_cols=128 Identities=26% Similarity=0.279 Sum_probs=35.7
Q ss_pred CCCCcceEEeccccccCCcchhhhh-hcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcch-hccccC
Q 042271 29 ESKPSLKFLSLINSSKNTILDQGLR-QLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGL-CELVLM 106 (517)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L 106 (517)
.++..+++|+|+++.+..+.. ++ .+.+|++|++++|.+... +.+..++.|++|++++|.++ .+.+.+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp --------------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 445556666666666666543 44 456666666666666522 23555666666666666666 333333 346666
Q ss_pred cEEEccccccCCc-ccccccCCCCCcEEeccCCccccccC--CCcccCCCCCceeecc
Q 042271 107 RELHIDNNDLRGS-LPLCLANLTSLRVLDVSDNQLTQNIS--SSPLMHLTSIEELILS 161 (517)
Q Consensus 107 ~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~l~~l~~L~~L~l~ 161 (517)
++|++++|+|.+. ....+..+++|++|++.+|.+...-. ...+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 6666666665421 11234556666666666666543100 1123445556655543
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=1.6e-11 Score=127.06 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=91.9
Q ss_pred cCceeeCCCccccccccchhhccCCCCcceEEeccccc--cCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCc
Q 042271 6 NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSS--KNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ 83 (517)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 83 (517)
..|++.+.++. +... +. -..++.|++|-+..+. ...++.+.|..++.|++||+++|.--+.+|..++.+-+||
T Consensus 524 ~~rr~s~~~~~--~~~~-~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 524 SVRRMSLMNNK--IEHI-AG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred heeEEEEeccc--hhhc-cC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 44666666652 2111 11 3455678888888664 6677776788888888888887765557888888888888
Q ss_pred EEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCc
Q 042271 84 VLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQ 139 (517)
Q Consensus 84 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 139 (517)
+|+++.+.+. .+|..++++..|.+|++..+.....+|.....+++|++|.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 8888888887 778888888888888888776554556666668888888877654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=9.1e-11 Score=96.99 Aligned_cols=129 Identities=27% Similarity=0.300 Sum_probs=48.9
Q ss_pred cCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCc
Q 042271 274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE 353 (517)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 353 (517)
++.++++|++.++.++ .+ +.+...+.+|+.|++++|.++.. ..+..++.|+.|++++|.+. .+.......+|+|+
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 3446777888888775 33 23433367888888888888743 35677888888888888887 55444445678888
Q ss_pred EEEccCCcccccc-cccccCCCCCcEEEccCcccccc---cchhhhhcccCCeEEecC
Q 042271 354 ILALSNNSLQGHI-FSEKFNLTNLMTLQLDGNKFTGE---ILESLSKCYLLEGLYLSD 407 (517)
Q Consensus 354 ~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~ 407 (517)
.|++++|.+.+.. ...+..+++|+.|++.+|+++.. ....+..+|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 8888888886532 34566788888888888887632 223456678888776543
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=3.7e-11 Score=124.38 Aligned_cols=156 Identities=24% Similarity=0.277 Sum_probs=122.6
Q ss_pred CCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCc--ccCCccccccCCCCCcEEEccCCccCCCCCcchhccccC
Q 042271 29 ESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYD--LRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM 106 (517)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 106 (517)
......|+..+.++.+..+.. -..++.|++|-+.+|. +.....++|..++.|++|||++|.-.+.+|+.++.+.+|
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchhhccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 444678888888888877765 3456689999999986 565566778999999999999987666999999999999
Q ss_pred cEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCccccccccc
Q 042271 107 RELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDS 186 (517)
Q Consensus 107 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l 186 (517)
++|+++++.+. .+|..+.+++.|.+|++..+.....+ +.....+++|++|.+..............+.++.+|+.+..
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99999999998 89999999999999999988764434 33556699999999987653334444455666666666665
Q ss_pred cc
Q 042271 187 EI 188 (517)
Q Consensus 187 ~~ 188 (517)
..
T Consensus 676 ~~ 677 (889)
T KOG4658|consen 676 TI 677 (889)
T ss_pred ec
Confidence 44
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=2e-11 Score=105.22 Aligned_cols=131 Identities=34% Similarity=0.352 Sum_probs=70.4
Q ss_pred CCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEE
Q 042271 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKIL 451 (517)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 451 (517)
.++.|+++++++|.|+ .+.+...-.|.++.|+++.|.+.. .. .+..+++|+.|++++|.+.. ...+-..+-+.+.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence 3455555666665555 333444445556666666665542 21 25555666666666665552 22333445566666
Q ss_pred EccCCccccCCCCCCCcccccEEEccCCcCCccch-hhhcCCCcccEEECCCCcCCC
Q 042271 452 DLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLE-SIIHDSPHLVTLDLSCNSLHG 507 (517)
Q Consensus 452 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~l~l~~n~~~~ 507 (517)
++++|.+ ........+.+|..|++++|+|..... ..+.++|.|+++.|.+||+.+
T Consensus 358 ~La~N~i-E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKI-ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhH-hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 6666655 222333335566666666666654322 355666666666666666653
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=3.3e-12 Score=119.39 Aligned_cols=176 Identities=29% Similarity=0.387 Sum_probs=85.4
Q ss_pred CcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEcc
Q 042271 303 LMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLD 382 (517)
Q Consensus 303 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 382 (517)
-...+++.|.+. .+|..++.+..|+.+.++.|.+. .+|.... .+..|..++++.|.++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS------------------- 134 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS------------------- 134 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-------------------
Confidence 344555666655 55556666666666666666554 4443332 2444555555555444
Q ss_pred CcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCC
Q 042271 383 GNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL 462 (517)
Q Consensus 383 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 462 (517)
..+..+..|+ |+.|.+++|+++ .+|..++....|..|+.+.|.+. .+|..+.++.+|+.|++..|++.+..
T Consensus 135 ------~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp 205 (722)
T KOG0532|consen 135 ------HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP 205 (722)
T ss_pred ------cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC
Confidence 3333333333 455555555544 44444444445555555555544 34444444555555555555443322
Q ss_pred CCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCcc
Q 042271 463 PSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQ 512 (517)
Q Consensus 463 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~ 512 (517)
+... .-.|..||+++|+++ .+|-.|.++..|++|-|.+||++ +.|.+
T Consensus 206 ~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAq 252 (722)
T KOG0532|consen 206 EELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQ 252 (722)
T ss_pred HHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHH
Confidence 2221 334445555555544 33444555555555555555555 33433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=3.1e-10 Score=110.20 Aligned_cols=201 Identities=32% Similarity=0.386 Sum_probs=132.5
Q ss_pred EEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCC-CCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271 280 TLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMK-MLERVDISYNQLTGEIPERMAARCFSLEILALS 358 (517)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 358 (517)
.++...+.+. .-...... .+.++.+++.++.++ .++....... +|+.|++++|.+. .++. ....++.|+.|+++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~-~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR-SNISELLE-LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc-cCchhhhc-ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhh-hhhccccccccccC
Confidence 5677776653 12223323 467888888888887 4444555553 8888888888877 4432 23457788888888
Q ss_pred CCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccc
Q 042271 359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI 438 (517)
Q Consensus 359 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 438 (517)
+|++.+... .....+.|+.|++++|.+. ..+........|+++.+++|.+. ..+..+..+.++..+.+.++++.. .
T Consensus 172 ~N~l~~l~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 172 FNDLSDLPK-LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred Cchhhhhhh-hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence 888775332 2226778888888888877 34444445556888888888544 455567777777777777777763 3
Q ss_pred cccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhc
Q 042271 439 PIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIH 490 (517)
Q Consensus 439 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 490 (517)
+..+..+++++.|++++|+++.... .....+++.|+++++.+....+....
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence 5566677778888888887766544 44467788888887777665554333
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=1.2e-10 Score=100.61 Aligned_cols=204 Identities=24% Similarity=0.215 Sum_probs=97.9
Q ss_pred cccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccc-cccccchhHHhh
Q 042271 270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ-LTGEIPERMAAR 348 (517)
Q Consensus 270 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~ 348 (517)
..+..+++|..+.++.|.-. .+...... -|.|+++.+....++.. + .+.-...+.....+.-. ..|.....+ .-
T Consensus 208 f~l~~f~~l~~~~~s~~~~~-~i~~~~~~-kptl~t~~v~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~-dT 282 (490)
T KOG1259|consen 208 FNLNAFRNLKTLKFSALSTE-NIVDIELL-KPTLQTICVHNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSA-DT 282 (490)
T ss_pred cchHHhhhhheeeeeccchh-heeceeec-Cchhheeeeeccccccc-c-cccchhhhcCccCCCCCccCCceEEec-ch
Confidence 34455667777777776543 22222222 46777777766654411 1 11111111111111000 001100000 01
Q ss_pred cCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEE
Q 042271 349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDII 428 (517)
Q Consensus 349 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 428 (517)
.+.|+++++++|.++. +..+..-.|.++.|++++|.+.. .+.+..+++|+.|++++|.+. ..-.+=..+.++++|.
T Consensus 283 Wq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhh-hhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 2345666666665542 22333345666666666666643 222556666666666666555 2333334455666666
Q ss_pred CCCCcccccccccccCCCCccEEEccCCcccc--CCCCCCCcccccEEEccCCcCCcc
Q 042271 429 MPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR--TLPSCFSPASIEQLHLSKNKIEGR 484 (517)
Q Consensus 429 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~n~~~~~ 484 (517)
+.+|.+.. ...+..+.+|..||+++|++.. ....+-.+|.|+.+.+.+|.+.+.
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 66666542 1344555666666666666522 122233366666666666666544
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=9.5e-10 Score=106.80 Aligned_cols=202 Identities=35% Similarity=0.475 Sum_probs=155.4
Q ss_pred eEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccC-CCcEEEccCCcCCCCCchhhhcCCCCcEEeccc
Q 042271 256 RLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERVDISY 334 (517)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 334 (517)
.+....+.+.... ......+.++.+++.++.++ .++..... .. +|+.|++++|.+. .++..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4666666552222 23344478999999999998 66666654 53 8999999999988 4556788999999999999
Q ss_pred cccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCcc
Q 042271 335 NQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEI 414 (517)
Q Consensus 335 ~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 414 (517)
|++. .++.... ..+.|+.|++++|.+.... ........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..
T Consensus 173 N~l~-~l~~~~~-~~~~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 173 NDLS-DLPKLLS-NLSNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred chhh-hhhhhhh-hhhhhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 9998 5655432 4779999999999987533 23335566999999999644 45667888889999999999887 44
Q ss_pred chhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCc
Q 042271 415 PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP 468 (517)
Q Consensus 415 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 468 (517)
+..+..++.+++|++++|.+..... +....++++++++++.++...+.....
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhcc
Confidence 6778889999999999999985444 788899999999999998877766653
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1.4e-09 Score=73.84 Aligned_cols=60 Identities=38% Similarity=0.512 Sum_probs=50.1
Q ss_pred CCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcC
Q 042271 446 NSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505 (517)
Q Consensus 446 ~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~ 505 (517)
|+|++|++++|+++...+..+. +++|++|++++|.++.+.+.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788888888888777766666 78888888888888888888899999999999998875
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.6e-09 Score=73.51 Aligned_cols=61 Identities=28% Similarity=0.384 Sum_probs=41.0
Q ss_pred CcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCcc
Q 042271 32 PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNEL 92 (517)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 92 (517)
|+|++|++++|.+..++.+.|.++++|++|++++|.+....+++|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566666666666666666667777777777777776655566666777777777666643
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.88 E-value=4.5e-09 Score=106.82 Aligned_cols=111 Identities=30% Similarity=0.497 Sum_probs=69.3
Q ss_pred CCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccC
Q 042271 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSK 478 (517)
Q Consensus 400 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~ 478 (517)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..+..+. +++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666666666666666666666666666666666666666666666666665555444 56666666666
Q ss_pred CcCCccchhhhcCC-CcccEEECCCCcCCCCCC
Q 042271 479 NKIEGRLESIIHDS-PHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 479 n~~~~~~~~~l~~~-~~L~~l~l~~n~~~~~~~ 510 (517)
|.+++.+|..+... .++..+++.+|+..+.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 66666666555543 355666666666555443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.86 E-value=4.8e-09 Score=106.63 Aligned_cols=107 Identities=29% Similarity=0.483 Sum_probs=79.7
Q ss_pred cCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEecc
Q 042271 57 HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVS 136 (517)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 136 (517)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36777788887777777777888888888888888777777777888888888888888877778778888888888888
Q ss_pred CCccccccCCCcccC-CCCCceeecccCC
Q 042271 137 DNQLTQNISSSPLMH-LTSIEELILSNNH 164 (517)
Q Consensus 137 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 164 (517)
+|.+.+.+|. .+.. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPA-ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCCh-HHhhccccCceEEecCCc
Confidence 8877766665 3433 2355667777665
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=2.5e-10 Score=107.09 Aligned_cols=169 Identities=28% Similarity=0.435 Sum_probs=107.1
Q ss_pred cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271 279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS 358 (517)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 358 (517)
...+++.|++. ++|..+.. |..|+.+.+..|.+. .++.+++.+..|+.++|+.|.+. .+|..++. + -|+.|.++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKVLIVS 151 (722)
T ss_pred hhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-cceeEEEe
Confidence 45566666665 66666655 556666666666665 56666666777777777777666 55555542 2 46666666
Q ss_pred CCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccc
Q 042271 359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI 438 (517)
Q Consensus 359 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 438 (517)
+|+++. ++..++..+.|..|+.+.|.+. ..+..+..+.+|+.|.+..|.+. .+|..+. .-.|.+||++.|++. .+
T Consensus 152 NNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence 666652 3344556666667777777665 45556666667777777766666 4444444 455666777777766 56
Q ss_pred cccccCCCCccEEEccCCcc
Q 042271 439 PIEFCQLNSLKILDLSNNSI 458 (517)
Q Consensus 439 ~~~~~~~~~L~~L~l~~n~l 458 (517)
|..|.++.+|++|.|.+|.+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred chhhhhhhhheeeeeccCCC
Confidence 66677777777777777766
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.6e-10 Score=97.57 Aligned_cols=179 Identities=22% Similarity=0.190 Sum_probs=117.2
Q ss_pred CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccc-cccccchhHHhhcCCCcE
Q 042271 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ-LTGEIPERMAARCFSLEI 354 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~ 354 (517)
..|+.+|++...++..--..+.+.|.+|+.|.+.++.+.+.+...+.+..+|+.|+++++. ++......+++.|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588888888877633333455668899999999999998888889999999999999985 343334556778889999
Q ss_pred EEccCCcccccc-ccccc-CCCCCcEEEccCcccc--cc-cchhhhhcccCCeEEecCCC-CCCccchhhcCCCCCcEEE
Q 042271 355 LALSNNSLQGHI-FSEKF-NLTNLMTLQLDGNKFT--GE-ILESLSKCYLLEGLYLSDNH-LTGEIPRWLGNLSALEDII 428 (517)
Q Consensus 355 L~l~~n~~~~~~-~~~~~-~~~~L~~L~l~~~~~~--~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 428 (517)
|+++.|...... ...+. --+.|+.|+++|+.-. .. ......+||+|..||+++|. ++......|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999988765322 11222 2467888888886532 11 12223467888888888874 3333334455566666666
Q ss_pred CCCCccccccccc---ccCCCCccEEEccCC
Q 042271 429 MPNNNLEGPIPIE---FCQLNSLKILDLSNN 456 (517)
Q Consensus 429 l~~~~~~~~~~~~---~~~~~~L~~L~l~~n 456 (517)
++.|.- +.|.. +...|+|.+|++-++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 666643 22322 344566666666554
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.8e-10 Score=98.23 Aligned_cols=179 Identities=22% Similarity=0.153 Sum_probs=85.1
Q ss_pred CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCc-ccccCChhhhhccCCCcEE
Q 042271 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNF-FRGHIPVEIGTYLPGLMDL 306 (517)
Q Consensus 228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L 306 (517)
.+++++++...++..-...+...|.+|+.|.+.+..+.+.+...+.+...|+.++++++. ++......+...|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355555555554433333334455666666666666655555555555666666666643 3322223334446666666
Q ss_pred EccCCcCCCCCc-hhhh-cCCCCcEEecccccc--ccccchhHHhhcCCCcEEEccCC-cccccccccccCCCCCcEEEc
Q 042271 307 NLSRNAFNGSIP-SSFA-DMKMLERVDISYNQL--TGEIPERMAARCFSLEILALSNN-SLQGHIFSEKFNLTNLMTLQL 381 (517)
Q Consensus 307 ~l~~~~i~~~~~-~~~~-~l~~L~~L~l~~~~i--~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l 381 (517)
+++.|....... ..+. --++|+.|+++|+.- .+.-.......||+|.+|++++| .++......+..++.|++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 666665442211 1111 124555666666531 11111223334556666666554 233333334445555555555
Q ss_pred cCcccccccchh---hhhcccCCeEEecCC
Q 042271 382 DGNKFTGEILES---LSKCYLLEGLYLSDN 408 (517)
Q Consensus 382 ~~~~~~~~~~~~---~~~~~~L~~L~l~~~ 408 (517)
+.|-. +.|+. +...|+|.+|++.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 55432 22222 233455555555554
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=5.1e-10 Score=101.19 Aligned_cols=277 Identities=19% Similarity=0.106 Sum_probs=150.1
Q ss_pred CcCEeeccCCcCCC-CCChhhhhcccccceEeccCCccC-CCcc-cccccCCcccEEEccCC-cccccCChhhhhccCCC
Q 042271 228 DLKNADLSHLNLSG-KFPNWLVENNANLERLLLADNSLF-GSFW-MPIHSHQKLATLDVSNN-FFRGHIPVEIGTYLPGL 303 (517)
Q Consensus 228 ~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L 303 (517)
.|+.+.++++.-.+ .-...+..+++++++|.+.+|... +... ..-..|++++.+++..| .+++..-......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35555555553222 222233456677777766666532 2211 12345677777777774 34443344455667788
Q ss_pred cEEEccCCc-CCCC-CchhhhcCCCCcEEeccccccc-cccchhHHhhcCCCcEEEccCCc-ccccc-cccccCCCCCcE
Q 042271 304 MDLNLSRNA-FNGS-IPSSFADMKMLERVDISYNQLT-GEIPERMAARCFSLEILALSNNS-LQGHI-FSEKFNLTNLMT 378 (517)
Q Consensus 304 ~~L~l~~~~-i~~~-~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~-~~~~~~~~~L~~ 378 (517)
++|+++.|. +++. +.....++..++++...||.-. .+....+..++.-+.++++..|. +++.. ...-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 888887774 3321 2234456666777766665321 11111222234445556655553 33322 222335677777
Q ss_pred EEccCcc-cccccchh-hhhcccCCeEEecCCCC-CCccchh-hcCCCCCcEEECCCCcccc--cccccccCCCCccEEE
Q 042271 379 LQLDGNK-FTGEILES-LSKCYLLEGLYLSDNHL-TGEIPRW-LGNLSALEDIIMPNNNLEG--PIPIEFCQLNSLKILD 452 (517)
Q Consensus 379 L~l~~~~-~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ 452 (517)
+..+++. +++..... -.++++|+.+.+++|+. +...... -.+++.|+.+++.+|.... .+...-.+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 7777654 33222222 23567778887777753 2211112 2456777777777775521 1222234677888888
Q ss_pred ccCCcc-ccCCCCCCC-----cccccEEEccCCcC-CccchhhhcCCCcccEEECCCCc
Q 042271 453 LSNNSI-FRTLPSCFS-----PASIEQLHLSKNKI-EGRLESIIHDSPHLVTLDLSCNS 504 (517)
Q Consensus 453 l~~n~l-~~~~~~~~~-----~~~L~~L~l~~n~~-~~~~~~~l~~~~~L~~l~l~~n~ 504 (517)
+++|.. +++....+. ...|+.+.+++|.. +....+-+..|++|+.+++-+++
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 887753 333212221 56778888888874 34455677777888888777664
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.71 E-value=7.4e-10 Score=100.16 Aligned_cols=297 Identities=19% Similarity=0.181 Sum_probs=178.6
Q ss_pred eeeEeeccccccCC--CccccccccCCcCEeeccCCc-CCCCCChhhhhcccccceEeccCCc-cCCCccc-ccccCCcc
Q 042271 204 QLTFISLSGYIDGG--TFPKFLYHQHDLKNADLSHLN-LSGKFPNWLVENNANLERLLLADNS-LFGSFWM-PIHSHQKL 278 (517)
Q Consensus 204 ~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L 278 (517)
.|+.+.+.++.-.+ ........++++++|.+.+|. +++.....+...+++++.+++..|. +++.... -...|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56677777664322 223344567888888888874 4444445556677888888887754 3433333 34568888
Q ss_pred cEEEccCCc-ccccCChhhhhccCCCcEEEccCCcCCCC--CchhhhcCCCCcEEeccccc-cccccchhHHhhcCCCcE
Q 042271 279 ATLDVSNNF-FRGHIPVEIGTYLPGLMDLNLSRNAFNGS--IPSSFADMKMLERVDISYNQ-LTGEIPERMAARCFSLEI 354 (517)
Q Consensus 279 ~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~ 354 (517)
+.++++.|. +.+........++..++.+..+||.-.+. +...=..++.+.++++.+|. ++++-...+..++.+|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 888888875 44444445555566777777777642211 11111345556677766664 343333445556778888
Q ss_pred EEccCCc-cccccccccc-CCCCCcEEEccCcc-cccccchhhh-hcccCCeEEecCCCCCC--ccchhhcCCCCCcEEE
Q 042271 355 LALSNNS-LQGHIFSEKF-NLTNLMTLQLDGNK-FTGEILESLS-KCYLLEGLYLSDNHLTG--EIPRWLGNLSALEDII 428 (517)
Q Consensus 355 L~l~~n~-~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ 428 (517)
++.+++. +++....++. ++++|+.+.+.+|+ +++.....+. +++.|+.+++.++.... .+...-.+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 8888753 4443333333 67888888888876 3433334443 56788888888885432 2344456688888888
Q ss_pred CCCCcccccc-----cccccCCCCccEEEccCCccccCCC-CCC-CcccccEEEccCCc-CCccchh-hhcCCCcccEEE
Q 042271 429 MPNNNLEGPI-----PIEFCQLNSLKILDLSNNSIFRTLP-SCF-SPASIEQLHLSKNK-IEGRLES-IIHDSPHLVTLD 499 (517)
Q Consensus 429 l~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~l~~n~-~~~~~~~-~l~~~~~L~~l~ 499 (517)
++.|...... ...-.+...|..+.+++++.+.... ... .+++||.+++.+|+ ++..... .-.++|+++...
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 8877653211 2223456778888888887533222 122 27888888888886 3333333 344567776654
Q ss_pred C
Q 042271 500 L 500 (517)
Q Consensus 500 l 500 (517)
+
T Consensus 459 ~ 459 (483)
T KOG4341|consen 459 Y 459 (483)
T ss_pred h
Confidence 3
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=2.5e-09 Score=103.84 Aligned_cols=245 Identities=26% Similarity=0.307 Sum_probs=153.5
Q ss_pred ccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEE
Q 042271 251 NANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERV 330 (517)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 330 (517)
+..++.+.+..+.+.. ....+..+.+|..+++.+|.+. .+...... +++|++|++++|.|+.. ..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~-~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSS-LVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhh-hhcchheeccccccccc--cchhhccchhhh
Confidence 3455555555555433 1233566778888888888876 33332323 77888888888888744 345666778888
Q ss_pred eccccccccccchhHHhhcCCCcEEEccCCccccccc-ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCC
Q 042271 331 DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF-SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNH 409 (517)
Q Consensus 331 ~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 409 (517)
++++|.+. .+.. +..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.. .+.+..+..+..+++.+|.
T Consensus 146 ~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence 88888877 3332 2226788888888887765433 1 3567888888888888753 3334444455555777777
Q ss_pred CCCccchhhcCCCC--CcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCcc---
Q 042271 410 LTGEIPRWLGNLSA--LEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR--- 484 (517)
Q Consensus 410 ~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~--- 484 (517)
+...- .+..... |+.+++.++++.. .+..+..+..+..+++.+|++.. .........+..+....+.+...
T Consensus 220 i~~~~--~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 220 ISKLE--GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN-LEGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred ceecc--CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc-cccccccchHHHhccCcchhcchhhh
Confidence 65321 1222233 7888888888873 33556677788888888887733 22223356666666777765422
Q ss_pred chh-hhcCCCcccEEECCCCcCCCCCC
Q 042271 485 LES-IIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 485 ~~~-~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
... .....+.++.+.+.+|++....+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hccccccccccccccccccCccccccc
Confidence 111 24556788888888888765444
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.59 E-value=4.4e-09 Score=102.20 Aligned_cols=219 Identities=26% Similarity=0.228 Sum_probs=144.8
Q ss_pred ccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCC
Q 042271 273 HSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352 (517)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L 352 (517)
..+..++.+.+..+.+. .+-.... .++++..+++.+|.+... ...+..+++|++|++++|.|.+..+. ..++.|
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~-~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L 142 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLS-KLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGL---STLTLL 142 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccc-cccceeeeeccccchhhc-ccchhhhhcchheeccccccccccch---hhccch
Confidence 34556667777777665 2222222 377889999999988733 22267788899999999988744332 235568
Q ss_pred cEEEccCCcccccccccccCCCCCcEEEccCcccccccc-hhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEIL-ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431 (517)
Q Consensus 353 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 431 (517)
+.|++++|.+.+.. .+..++.|+.+++++|.+..... . ...+.+++.+++.+|.+... ..+..+..+..+++..
T Consensus 143 ~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 143 KELNLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLD 217 (414)
T ss_pred hhheeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccc
Confidence 88999998887532 34458888888999888875333 2 57788888888988887632 2344445555557777
Q ss_pred CcccccccccccCCC--CccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271 432 NNLEGPIPIEFCQLN--SLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506 (517)
Q Consensus 432 ~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~ 506 (517)
|.+....+ +..+. +|+.+++++|++......+-....++.|++.+|.+... ..+...+.+..+..++|++.
T Consensus 218 n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 218 NKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 87764322 22233 38889999988855433333367888888888877643 23455566777777777654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=3.7e-09 Score=102.30 Aligned_cols=195 Identities=25% Similarity=0.203 Sum_probs=102.7
Q ss_pred CcccEEEccCCcccccC-ChhhhhccCCCcEEEccCCcCCCCCchhhhcC-CCCcEEeccccccccccchhHHh------
Q 042271 276 QKLATLDVSNNFFRGHI-PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM-KMLERVDISYNQLTGEIPERMAA------ 347 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~~~~~------ 347 (517)
++++.+.+-...-.+.. |..++. +.+|+.|.+.+|.+.. . ..+..+ ..|++|.-.+. .. .+ ..++.
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifp-F~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~S-l~-Al-~~v~ascggd~ 157 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFP-FRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHNS-LD-AL-RHVFASCGGDI 157 (1096)
T ss_pred hhheeeeecccCCCCCCCCceecc-ccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhcc-HH-HH-HHHHHHhcccc
Confidence 44445544443322222 555555 7788888888887762 1 111111 22334332211 00 00 00010
Q ss_pred --h--cCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCC
Q 042271 348 --R--CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSA 423 (517)
Q Consensus 348 --~--~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 423 (517)
. .-.|...++++|.+. .+..++.-++.++.|+|+.|++++ .+.+..|+.|++|||+.|.+.....-...+|.
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK- 233 (1096)
T ss_pred ccchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhccccccchhhhh-
Confidence 0 114556666666654 222344456777777777777754 33566777777777777776632222223333
Q ss_pred CcEEECCCCcccccccccccCCCCccEEEccCCccccCC--CCCCCcccccEEEccCCcCC
Q 042271 424 LEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL--PSCFSPASIEQLHLSKNKIE 482 (517)
Q Consensus 424 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~~~ 482 (517)
|..|.+++|.+.. ...+.++.+|+.||+++|-+.+.. ...+.+..|++|++.+|.+.
T Consensus 234 L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777777776652 134556677777777777654432 22233567777777777664
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=9.1e-09 Score=99.64 Aligned_cols=182 Identities=30% Similarity=0.361 Sum_probs=127.1
Q ss_pred cccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCc--c-------CCCcccccccCCcccEEEccCCcccc
Q 042271 220 PKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNS--L-------FGSFWMPIHSHQKLATLDVSNNFFRG 290 (517)
Q Consensus 220 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~-------~~~~~~~~~~~~~L~~L~l~~~~~~~ 290 (517)
|-.+.....|+.|.++++++..... +..--..|++|...+.- + .+.+..+ ....+|.+.++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~G--L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKG--LQELRHQLEKLICHNSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhh--hHHHHHhhhhhhhhccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHH-
Confidence 5566777888888888888764111 11112345555443221 0 0111011 11246888888888875
Q ss_pred cCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccc
Q 042271 291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEK 370 (517)
Q Consensus 291 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 370 (517)
.....+ ..++.++.|+|++|.+++. ..+..|+.|++||++.|.+. .+|.....+|+ |..|.+.+|.++. ...+
T Consensus 178 ~mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~gi 250 (1096)
T KOG1859|consen 178 LMDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRGI 250 (1096)
T ss_pred hHHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhhH
Confidence 333333 3488999999999999844 48899999999999999988 77765555675 9999999998875 3467
Q ss_pred cCCCCCcEEEccCcccccc-cchhhhhcccCCeEEecCCCCCC
Q 042271 371 FNLTNLMTLQLDGNKFTGE-ILESLSKCYLLEGLYLSDNHLTG 412 (517)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 412 (517)
.++.+|+.||+++|-+.+. ..+.+..+..|+.|.+.||++-.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 7899999999999987542 34557778899999999998863
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=1.8e-07 Score=80.09 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=76.0
Q ss_pred hcCCCcEEEccCCccccccc----ccccCCCCCcEEEccCcccccccchhh-------------hhcccCCeEEecCCCC
Q 042271 348 RCFSLEILALSNNSLQGHIF----SEKFNLTNLMTLQLDGNKFTGEILESL-------------SKCYLLEGLYLSDNHL 410 (517)
Q Consensus 348 ~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~ 410 (517)
+||.|+..+++.|.+....+ ..++.-..|..|.+++|.+..+.-.-+ ..-|.|+++....|.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 45666666666665543222 223355666777777666542211111 1235566666666655
Q ss_pred CCc----cchhhcCCCCCcEEECCCCccccc-----ccccccCCCCccEEEccCCccccCCCCCCC-----cccccEEEc
Q 042271 411 TGE----IPRWLGNLSALEDIIMPNNNLEGP-----IPIEFCQLNSLKILDLSNNSIFRTLPSCFS-----PASIEQLHL 476 (517)
Q Consensus 411 ~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~L~~L~l 476 (517)
... ....++.-..|+.+.+..|.+.-. .-..+..+.+|+.|++..|-++.....+.+ -+.|++|.+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 421 112233334566666666655321 111234456666666666665554433322 134566666
Q ss_pred cCCcCCccch----hhhcC--CCcccEEECCCCcCC
Q 042271 477 SKNKIEGRLE----SIIHD--SPHLVTLDLSCNSLH 506 (517)
Q Consensus 477 ~~n~~~~~~~----~~l~~--~~~L~~l~l~~n~~~ 506 (517)
.+|-++.... ..|.. .|+|..|-..+|-.-
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 6665543321 11211 255666666665543
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.36 E-value=1e-07 Score=96.73 Aligned_cols=154 Identities=22% Similarity=0.284 Sum_probs=108.3
Q ss_pred CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCc-chhhhhhcccCcEEEecCCcccCCccccccCCCCCc
Q 042271 5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTI-LDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ 83 (517)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 83 (517)
.+|++|+++|.. .+...++......+|.|++|.+++.....- .......+++|+.||++++.+++. ..+.++++||
T Consensus 122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 478999999975 567777777677999999999985444322 122456899999999999999844 7788999999
Q ss_pred EEEccCCccCC-CCCcchhccccCcEEEccccccCCcc--c----ccccCCCCCcEEeccCCccccccCCCcccCCCCCc
Q 042271 84 VLYASSNELTG-NISPGLCELVLMRELHIDNNDLRGSL--P----LCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIE 156 (517)
Q Consensus 84 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~--~----~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~ 156 (517)
.|.+++-.+.. .....+.++++|++||+|........ . +.-..+|+|+.||.+++.+.+.+....+..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 99998766652 12235678999999999987654221 1 12235889999999988876544332333445555
Q ss_pred eeecc
Q 042271 157 ELILS 161 (517)
Q Consensus 157 ~L~l~ 161 (517)
.+.+-
T Consensus 279 ~i~~~ 283 (699)
T KOG3665|consen 279 QIAAL 283 (699)
T ss_pred hhhhh
Confidence 55443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=1.7e-07 Score=80.29 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=47.1
Q ss_pred ccccceEeccCCccCCCcccc----cccCCcccEEEccCCccc---ccCChhh------hhccCCCcEEEccCCcCCCCC
Q 042271 251 NANLERLLLADNSLFGSFWMP----IHSHQKLATLDVSNNFFR---GHIPVEI------GTYLPGLMDLNLSRNAFNGSI 317 (517)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~---~~~~~~~------~~~~~~L~~L~l~~~~i~~~~ 317 (517)
+..++++++++|.+....... +..-.+|+..+++.-... ++++... ...||.|+.+++++|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 567777888888775443332 333456666666653221 1222111 112666777777777665444
Q ss_pred chh----hhcCCCCcEEeccccccc
Q 042271 318 PSS----FADMKMLERVDISYNQLT 338 (517)
Q Consensus 318 ~~~----~~~l~~L~~L~l~~~~i~ 338 (517)
+.. ++.-..|++|.+.+|.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC
Confidence 433 234456666666666544
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=5e-07 Score=78.54 Aligned_cols=208 Identities=20% Similarity=0.154 Sum_probs=131.6
Q ss_pred CCCcEEEccCCcCCCCC-chhh-hcCCCCcEEeccccccccccc--hhHHhhcCCCcEEEccCCcccccccccccCCCCC
Q 042271 301 PGLMDLNLSRNAFNGSI-PSSF-ADMKMLERVDISYNQLTGEIP--ERMAARCFSLEILALSNNSLQGHIFSEKFNLTNL 376 (517)
Q Consensus 301 ~~L~~L~l~~~~i~~~~-~~~~-~~l~~L~~L~l~~~~i~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 376 (517)
..++.+.+.++.+.... ...| ..++.++++|+.+|.|. .+. ..+...+|.|+.|+++.|.+...+...-....+|
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 35556777777776331 1222 35677888999999887 333 2345578899999999988764332222345688
Q ss_pred cEEEccCccccccc-chhhhhcccCCeEEecCCCCCC--ccchhhcCC-CCCcEEECCCCcccccc--cccccCCCCccE
Q 042271 377 MTLQLDGNKFTGEI-LESLSKCYLLEGLYLSDNHLTG--EIPRWLGNL-SALEDIIMPNNNLEGPI--PIEFCQLNSLKI 450 (517)
Q Consensus 377 ~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~ 450 (517)
++|-+.|..+.... ...+..+|.++++++++|.... ....+.+.. +.++++....|....-. ..--..+|++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 88888887765322 2345567888888888883321 111222222 35666666666543110 111123578888
Q ss_pred EEccCCccccCCCCCCC--cccccEEEccCCcCCccc-hhhhcCCCcccEEECCCCcCCCCC
Q 042271 451 LDLSNNSIFRTLPSCFS--PASIEQLHLSKNKIEGRL-ESIIHDSPHLVTLDLSCNSLHGSI 509 (517)
Q Consensus 451 L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~l~l~~n~~~~~~ 509 (517)
+.+..|++......... .+.+--|+++.+++.+.. .+.+.+.+.|+.|.++.+|+...+
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 88888887555443332 677778888888887653 367888899999999999987543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=3.3e-07 Score=79.62 Aligned_cols=232 Identities=17% Similarity=0.156 Sum_probs=131.8
Q ss_pred hhccccCcEEEccccccCCccc-ccc-cCCCCCcEEeccCCcccc--ccCCCcccCCCCCceeecccCCCCCCCCCcccc
Q 042271 100 LCELVLMRELHIDNNDLRGSLP-LCL-ANLTSLRVLDVSDNQLTQ--NISSSPLMHLTSIEELILSNNHFFQSPISLEPL 175 (517)
Q Consensus 100 l~~l~~L~~L~L~~~~~~~~~~-~~~-~~l~~L~~L~L~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 175 (517)
+....-++.+.+.++.|..+-. ..| ..++.++.+||.+|.+.+ .+.. .++++|.|+.|+++.|+... ++.
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s-~I~---- 114 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSS-DIK---- 114 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCC-ccc----
Confidence 3333455566666666542211 112 256789999999998865 2222 46789999999999887411 110
Q ss_pred cCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccc
Q 042271 176 FNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLE 255 (517)
Q Consensus 176 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 255 (517)
.++ .+..+|+.+.+.+. .+.-.-...+...+|.++
T Consensus 115 -~lp--------------------~p~~nl~~lVLNgT------------------------~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 115 -SLP--------------------LPLKNLRVLVLNGT------------------------GLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred -cCc--------------------ccccceEEEEEcCC------------------------CCChhhhhhhhhcchhhh
Confidence 000 12235555555543 333223333345566666
Q ss_pred eEeccCCccCCCcc---cccccCCcccEEEccCCccccc-CChhhhhccCCCcEEEccCCcCCCC-CchhhhcCCCCcEE
Q 042271 256 RLLLADNSLFGSFW---MPIHSHQKLATLDVSNNFFRGH-IPVEIGTYLPGLMDLNLSRNAFNGS-IPSSFADMKMLERV 330 (517)
Q Consensus 256 ~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L 330 (517)
+|.++.|.+..... .+-..-+.++++++.+|...-. -.......+|++..+.+..|.+... .......++.+-.|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 66666663311100 0011224566777776643210 0112334478888888888877632 33445566777788
Q ss_pred eccccccccccchhHHhhcCCCcEEEccCCccccccc------ccccCCCCCcEEEcc
Q 042271 331 DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF------SEKFNLTNLMTLQLD 382 (517)
Q Consensus 331 ~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~L~~L~l~ 382 (517)
.++.++|.+-.......++++|..|.+.++++.+... --++++++++.|+=+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 8888887743334556678889999998887764222 135577888887654
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.22 E-value=1.9e-06 Score=70.71 Aligned_cols=104 Identities=21% Similarity=0.170 Sum_probs=49.6
Q ss_pred cCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCc-ccccccCCCCCcEEec
Q 042271 57 HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGS-LPLCLANLTSLRVLDV 135 (517)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L 135 (517)
....+||++|.+. ....|..++.|.+|.+..|.|+..-|.--..+++|..|.+++|.+... ...-+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4455555555544 123344555555555555555533332223345555555555554311 0112445556666666
Q ss_pred cCCcccc--ccCCCcccCCCCCceeeccc
Q 042271 136 SDNQLTQ--NISSSPLMHLTSIEELILSN 162 (517)
Q Consensus 136 ~~~~~~~--~~~~~~l~~l~~L~~L~l~~ 162 (517)
-+|.+.+ ..-...+..+|+|+.||+..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 6655533 11122345566666666554
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.13 E-value=9.1e-06 Score=65.01 Aligned_cols=124 Identities=23% Similarity=0.330 Sum_probs=56.6
Q ss_pred ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCC
Q 042271 368 SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNS 447 (517)
Q Consensus 368 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 447 (517)
.+|.++++|+.+.+.. .+..+....|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455566666666653 333345556666666777777664 4434445566666677777755 333234456666777
Q ss_pred ccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCccc
Q 042271 448 LKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLV 496 (517)
Q Consensus 448 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 496 (517)
|+.+++..+ +.......+....|+.+.+.. .+..+....|.+|++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNCNLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT-T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCCCceEEEECC-CccEECCccccccccCC
Confidence 777777654 444455555544777777765 44556667788887764
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.11 E-value=5.9e-07 Score=90.17 Aligned_cols=62 Identities=32% Similarity=0.264 Sum_probs=30.6
Q ss_pred cCCCcEEEccCCc-CCCCCchhhhc-CCCCcEEeccccc-cccccchhHHhhcCCCcEEEccCCc
Q 042271 300 LPGLMDLNLSRNA-FNGSIPSSFAD-MKMLERVDISYNQ-LTGEIPERMAARCFSLEILALSNNS 361 (517)
Q Consensus 300 ~~~L~~L~l~~~~-i~~~~~~~~~~-l~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~n~ 361 (517)
+++|+.++++++. +++.....+.. |++|++|.+.+|. +++..-..+...++.|+.|++++|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4555555555554 44333333322 5555555555554 3444444444455555555555553
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=5e-07 Score=69.14 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=47.7
Q ss_pred cCCeEEecCCCCCCccchhh-cCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEcc
Q 042271 399 LLEGLYLSDNHLTGEIPRWL-GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLS 477 (517)
Q Consensus 399 ~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 477 (517)
.|+.+++++|.+++ .|..| ..++.++.+++.+|.++ .+|..+..++.|+.|+++.|++.......+.+.++-.|+..
T Consensus 54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 34444555555542 22222 22334555555555554 23444555555555555555553333333324444444444
Q ss_pred CCcCCccchhhhcCCCcccEEECCCCcCCCCCCccc
Q 042271 478 KNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513 (517)
Q Consensus 478 ~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~ 513 (517)
+|....+.-+.| .-..+-..++.++++.+..|...
T Consensus 132 ~na~~eid~dl~-~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 132 ENARAEIDVDLF-YSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred CCccccCcHHHh-ccccHHHHHhcCCcccccCcccc
Confidence 444432222211 11222223345555555554443
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.03 E-value=1.4e-05 Score=63.98 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=40.1
Q ss_pred hhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhccc
Q 042271 320 SFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYL 399 (517)
Q Consensus 320 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 399 (517)
+|.++++|+.+.+.. .+. .+....|.++++|+.+.+..+ +......+|.++++++.+.+.. .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 344444455554442 222 344444444444555554442 3333333444444455555543 222223334444555
Q ss_pred CCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCc
Q 042271 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSL 448 (517)
Q Consensus 400 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 448 (517)
++.+.+..+ +.......|.++ +++.+.+.+ .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 555555443 322333344444 555555543 2222333445554444
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=6.7e-06 Score=50.73 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=29.4
Q ss_pred ccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271 469 ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506 (517)
Q Consensus 469 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~ 506 (517)
++|++|++++|.++... ..+.++++|++|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCC
Confidence 46889999999998554 45889999999999999988
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=8.3e-06 Score=67.09 Aligned_cols=105 Identities=22% Similarity=0.246 Sum_probs=63.8
Q ss_pred CCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccc-cccccCCCCccEE
Q 042271 373 LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI-PIEFCQLNSLKIL 451 (517)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 451 (517)
..+...+++++|.+.. ...|..+++|.+|.+++|.|+...|..-..+++|..|.+.+|.+.... -..+..||+|++|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4456667777777642 445666777777777777777555555555666777777777665321 2345567777777
Q ss_pred EccCCccccCCCCCC----CcccccEEEccCC
Q 042271 452 DLSNNSIFRTLPSCF----SPASIEQLHLSKN 479 (517)
Q Consensus 452 ~l~~n~l~~~~~~~~----~~~~L~~L~l~~n 479 (517)
.+-+|+.++..-.-. ..++|+.||..+-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 777776644322211 1566777666543
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=5.5e-07 Score=68.93 Aligned_cols=108 Identities=21% Similarity=0.294 Sum_probs=79.5
Q ss_pred cceEEeccccccCCcchh--hhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEE
Q 042271 33 SLKFLSLINSSKNTILDQ--GLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELH 110 (517)
Q Consensus 33 ~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 110 (517)
.+-.++|+++.+..++.. .+.+..+|...++++|.+....+..-.+.+.++.+++..|.+. .+|+.++.++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 455677777777766541 2345567777888888888444444456678888888888888 6788888888888888
Q ss_pred ccccccCCcccccccCCCCCcEEeccCCcccc
Q 042271 111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQ 142 (517)
Q Consensus 111 L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 142 (517)
++.|.+. ..|..+..+.+|-.|+..++....
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCcccc
Confidence 8888887 677777778888888888777643
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=5.3e-06 Score=84.45 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccc
Q 042271 275 HQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337 (517)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i 337 (517)
+|.|++|.+.+-.+...-....+..+|+|..||+++++++.. ..++.+++|+.|.+.+-.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~ 207 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEF 207 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCC
Confidence 455555555543332111122233355555555555555422 3444555555554444433
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=7.2e-05 Score=70.18 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=87.2
Q ss_pred hhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCc-ccccccchhhhhcc
Q 042271 320 SFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN-KFTGEILESLSKCY 398 (517)
Q Consensus 320 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~ 398 (517)
.+..+.+++.|++++|.+. .+|. -.++|+.|.+++|.-....+..+ .++|+.|++++| .+. ..| +
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~ 112 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------E 112 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------c
Confidence 4556789999999999877 6662 24479999998865433333333 468999999988 443 222 4
Q ss_pred cCCeEEecCCCCCCccchhhcCC-CCCcEEECCCCcccc--cccccccCCCCccEEEccCCccccCCCCCCCcccccEEE
Q 042271 399 LLEGLYLSDNHLTGEIPRWLGNL-SALEDIIMPNNNLEG--PIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLH 475 (517)
Q Consensus 399 ~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 475 (517)
+|+.|++.++.... +..+ ++|+.|.+.++.... ..+.. -.++|++|++++|.... .+..+ +.+|+.|+
T Consensus 113 sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~L-P~SLk~L~ 183 (426)
T PRK15386 113 SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKL-PESLQSIT 183 (426)
T ss_pred ccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Ccccc-cccCcEEE
Confidence 68888887665431 1222 467788875543211 11111 12589999999887643 23222 57999999
Q ss_pred ccCCc
Q 042271 476 LSKNK 480 (517)
Q Consensus 476 l~~n~ 480 (517)
++.+.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 87763
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.8e-05 Score=48.87 Aligned_cols=36 Identities=36% Similarity=0.630 Sum_probs=19.1
Q ss_pred cCcEEEccccccCCcccccccCCCCCcEEeccCCccc
Q 042271 105 LMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLT 141 (517)
Q Consensus 105 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 141 (517)
+|++|++++|+++ .+|..+.+|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666655 34444556666666666665554
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=6.6e-05 Score=70.45 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=6.2
Q ss_pred cccceEeccCCcc
Q 042271 252 ANLERLLLADNSL 264 (517)
Q Consensus 252 ~~L~~L~l~~~~~ 264 (517)
.+++.|++++|.+
T Consensus 52 ~~l~~L~Is~c~L 64 (426)
T PRK15386 52 RASGRLYIKDCDI 64 (426)
T ss_pred cCCCEEEeCCCCC
Confidence 4445555554433
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=1.3e-06 Score=75.35 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=75.6
Q ss_pred CCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCcc-ccccCCCC
Q 042271 3 KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLP-WCLANMTS 81 (517)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~ 81 (517)
++.+++-|+..|| ++.+... ..+++.|++|.|+-|.|.++.+ +..|.+|+.|.|..|.+.+... ..+.++++
T Consensus 17 dl~~vkKLNcwg~--~L~DIsi---c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGC--GLDDISI---CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCC--CccHHHH---HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 4567778888888 5555433 6788999999999888888875 8889999999999988874322 45678888
Q ss_pred CcEEEccCCccCCCCCc-----chhccccCcEEE
Q 042271 82 LQVLYASSNELTGNISP-----GLCELVLMRELH 110 (517)
Q Consensus 82 L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~ 110 (517)
|+.|+|..|...+..+. .+.-+|+|++||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888888877655443 345677787774
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.71 E-value=8.8e-06 Score=81.66 Aligned_cols=175 Identities=23% Similarity=0.144 Sum_probs=102.3
Q ss_pred ccCCcCEeeccCCc-CCCCCChhhhhcccccceEeccCC-ccCCC----cccccccCCcccEEEccCCc-ccccCChhhh
Q 042271 225 HQHDLKNADLSHLN-LSGKFPNWLVENNANLERLLLADN-SLFGS----FWMPIHSHQKLATLDVSNNF-FRGHIPVEIG 297 (517)
Q Consensus 225 ~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 297 (517)
.++.++.+.+.++. +.......+...++.|+.|+++++ ..... .......+++|+.++++.+. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35677777777763 332222334567788888888763 21111 11234456788888888887 6655555666
Q ss_pred hccCCCcEEEccCCc-CCCC-CchhhhcCCCCcEEeccccccc-cccchhHHhhcCCCcEEEccCCcccccccccccCCC
Q 042271 298 TYLPGLMDLNLSRNA-FNGS-IPSSFADMKMLERVDISYNQLT-GEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT 374 (517)
Q Consensus 298 ~~~~~L~~L~l~~~~-i~~~-~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 374 (517)
..+++|+.|.+.+|. +++. +......+++|++|++++|... +..-.....++++++.+.+....- ++
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 668899999988887 5543 2334467888999999988653 222233345577777765544321 34
Q ss_pred CCcEEEccCcccc---cccchhhhhcccCCeEEecCCC
Q 042271 375 NLMTLQLDGNKFT---GEILESLSKCYLLEGLYLSDNH 409 (517)
Q Consensus 375 ~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~ 409 (517)
.++.+.+.++... .........++.++.+.+..+.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 4444444433321 1222334456666666666655
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=4.7e-05 Score=65.62 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=38.2
Q ss_pred cccCcEEEecCCcccCCccccccCCCCCcEEEccCC--ccCCCCCcchhccccCcEEEccccccCCccccc---ccCCCC
Q 042271 55 LVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSN--ELTGNISPGLCELVLMRELHIDNNDLRGSLPLC---LANLTS 129 (517)
Q Consensus 55 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---~~~l~~ 129 (517)
+..|+.|++.+..++ .-..+..+++|++|.++.| .+.+.++.....+|+|+++++++|++.. +.. +..+++
T Consensus 42 ~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence 344444444444433 1122344555566666555 3433333333344566666666665541 222 234445
Q ss_pred CcEEeccCCcc
Q 042271 130 LRVLDVSDNQL 140 (517)
Q Consensus 130 L~~L~L~~~~~ 140 (517)
|.+|++..|..
T Consensus 118 L~~Ldl~n~~~ 128 (260)
T KOG2739|consen 118 LKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCc
Confidence 55555555544
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=9e-05 Score=63.92 Aligned_cols=108 Identities=25% Similarity=0.283 Sum_probs=77.5
Q ss_pred cCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCC--cccCCccccccCCCCCcEEEccCCccCC-CCCcchhccc
Q 042271 28 GESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGY--DLRGSLPWCLANMTSLQVLYASSNELTG-NISPGLCELV 104 (517)
Q Consensus 28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~ 104 (517)
...+..|+.|++.+....++.. |-.+++|+.|.++.| ++...++--..++++|+++++++|++.. .....+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 4566677888877666666553 667899999999999 6666666666778999999999998872 1223467888
Q ss_pred cCcEEEccccccCCccc---ccccCCCCCcEEeccC
Q 042271 105 LMRELHIDNNDLRGSLP---LCLANLTSLRVLDVSD 137 (517)
Q Consensus 105 ~L~~L~L~~~~~~~~~~---~~~~~l~~L~~L~L~~ 137 (517)
+|..|++.+|..+.... ..|.-+++|+.|+-.+
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 99999999998763111 2355567777775443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=4.3e-05 Score=66.21 Aligned_cols=100 Identities=20% Similarity=0.123 Sum_probs=60.1
Q ss_pred CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL 355 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 355 (517)
.+.++|++++|.+.+ ..+...++.|+.|.|+-|.|+.. ..+..|++|++|.|..|.|.+.-.-.+..++|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 355666666666652 22333467777777777777633 3566777777777777777643334555667777777
Q ss_pred EccCCcccccccc-----cccCCCCCcEEE
Q 042271 356 ALSNNSLQGHIFS-----EKFNLTNLMTLQ 380 (517)
Q Consensus 356 ~l~~n~~~~~~~~-----~~~~~~~L~~L~ 380 (517)
++..|...+.... .+..+|+|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777765432211 233466666664
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.12 E-value=0.00017 Score=36.89 Aligned_cols=22 Identities=50% Similarity=0.656 Sum_probs=16.4
Q ss_pred cccEEECCCCcCCCCCCccccCC
Q 042271 494 HLVTLDLSCNSLHGSIPNQIGRL 516 (517)
Q Consensus 494 ~L~~l~l~~n~~~~~~~~~~~~~ 516 (517)
+|++||+++|+|+ .+|++|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4778888888888 777777765
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.22 E-value=3.3e-05 Score=75.30 Aligned_cols=84 Identities=23% Similarity=0.249 Sum_probs=44.0
Q ss_pred CcEEEccCCcCCCC----CchhhhcCCCCcEEeccccccccccchhHHhhc----CCCcEEEccCCcccccc----cccc
Q 042271 303 LMDLNLSRNAFNGS----IPSSFADMKMLERVDISYNQLTGEIPERMAARC----FSLEILALSNNSLQGHI----FSEK 370 (517)
Q Consensus 303 L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~----~~L~~L~l~~n~~~~~~----~~~~ 370 (517)
+..+.+.+|.+.+. +...+..++.|+.|++++|.+.+.........+ ..++.|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666665533 233455667777777777777643322222211 23455555556555322 2233
Q ss_pred cCCCCCcEEEccCccc
Q 042271 371 FNLTNLMTLQLDGNKF 386 (517)
Q Consensus 371 ~~~~~L~~L~l~~~~~ 386 (517)
...+.++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3456666666666655
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.0014 Score=54.35 Aligned_cols=82 Identities=18% Similarity=0.091 Sum_probs=46.8
Q ss_pred CCcEEECCCCcccccccccccCCCCccEEEccCCc-cccCCCCCCC--cccccEEEccCCc-CCccchhhhcCCCcccEE
Q 042271 423 ALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNS-IFRTLPSCFS--PASIEQLHLSKNK-IEGRLESIIHDSPHLVTL 498 (517)
Q Consensus 423 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~--~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~l 498 (517)
.++.++.+++.+...-...+..+++++.|.+.+|. +.++....+. .++||.|+|++|. ||......+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45556666666655444555556666666666653 2121111111 5677777777664 666666667777777777
Q ss_pred ECCCCc
Q 042271 499 DLSCNS 504 (517)
Q Consensus 499 ~l~~n~ 504 (517)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 666543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.0095 Score=30.31 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=8.3
Q ss_pred CcEEEccccccCCcccccc
Q 042271 106 MRELHIDNNDLRGSLPLCL 124 (517)
Q Consensus 106 L~~L~L~~~~~~~~~~~~~ 124 (517)
|++|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 344333
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.79 E-value=0.017 Score=27.20 Aligned_cols=14 Identities=64% Similarity=0.802 Sum_probs=6.7
Q ss_pred CcccEEECCCCcCC
Q 042271 493 PHLVTLDLSCNSLH 506 (517)
Q Consensus 493 ~~L~~l~l~~n~~~ 506 (517)
++|++|++++|.++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666666666655
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=0.009 Score=49.78 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=42.6
Q ss_pred cceEeccCCccCCCcccccccCCcccEEEccCCcc-cccCChhhhhccCCCcEEEccCC-cCCCCCchhhhcCCCCcEEe
Q 042271 254 LERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFF-RGHIPVEIGTYLPGLMDLNLSRN-AFNGSIPSSFADMKMLERVD 331 (517)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~l~~L~~L~ 331 (517)
++.++-+++.+..+....+..++.++.|.+.+|.- .+..-..++...++|+.|++++| .|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 44455555554444444455555566666655532 11111222233566777777766 45544455566666666666
Q ss_pred cccc
Q 042271 332 ISYN 335 (517)
Q Consensus 332 l~~~ 335 (517)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6554
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.14 E-value=0.0023 Score=62.66 Aligned_cols=187 Identities=24% Similarity=0.182 Sum_probs=111.4
Q ss_pred cccCCcccEEEccCCcccccCChhhhhcc----CCCcEEEccCCcCCCC----CchhhhcCCCCcEEecccccccccc--
Q 042271 272 IHSHQKLATLDVSNNFFRGHIPVEIGTYL----PGLMDLNLSRNAFNGS----IPSSFADMKMLERVDISYNQLTGEI-- 341 (517)
Q Consensus 272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~i~~~~-- 341 (517)
+...+.|..|++++|.+.+.....+...+ ..+++|++..|.+++. +...+.....++.++++.|.+....
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 33445566666666655433222222211 3456677777776643 3344555677778888887764211
Q ss_pred --chhH---HhhcCCCcEEEccCCcccc----cccccccCCCC-CcEEEccCcccccccch----hhhhc-ccCCeEEec
Q 042271 342 --PERM---AARCFSLEILALSNNSLQG----HIFSEKFNLTN-LMTLQLDGNKFTGEILE----SLSKC-YLLEGLYLS 406 (517)
Q Consensus 342 --~~~~---~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~-L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~ 406 (517)
+... +....+++.|.+.+|.++. .....+...+. +..+++..|.+.+.... .+..+ ..+++++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence 1111 1134568888888887763 12233445555 77799999988754332 23334 567899999
Q ss_pred CCCCCC----ccchhhcCCCCCcEEECCCCcccccc----cccccCCCCccEEEccCCcc
Q 042271 407 DNHLTG----EIPRWLGNLSALEDIIMPNNNLEGPI----PIEFCQLNSLKILDLSNNSI 458 (517)
Q Consensus 407 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l 458 (517)
.|.+.. .....+..++.++.+.++.|.+.... .........+.++-+.++..
T Consensus 271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred cCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence 998875 34556677889999999999886432 22334455666677765544
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.80 E-value=0.011 Score=30.89 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=6.6
Q ss_pred ccccEEEccCCcCCcc
Q 042271 469 ASIEQLHLSKNKIEGR 484 (517)
Q Consensus 469 ~~L~~L~l~~n~~~~~ 484 (517)
++|++|+|++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3445555555554433
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.76 E-value=0.0061 Score=51.83 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=55.7
Q ss_pred CcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCccccccc
Q 042271 46 TILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLA 125 (517)
Q Consensus 46 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 125 (517)
.++-..+..++..++||++.|++. -+...|..++.|..|+++.+.+. ..|..++....++.+++..|+.+ ..|.++.
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 333334445566666666666655 34444555556666666666665 55666666666666666666655 5666666
Q ss_pred CCCCCcEEeccCCcc
Q 042271 126 NLTSLRVLDVSDNQL 140 (517)
Q Consensus 126 ~l~~L~~L~L~~~~~ 140 (517)
..++++.+++-++.+
T Consensus 109 k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEF 123 (326)
T ss_pred ccCCcchhhhccCcc
Confidence 666666666666654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.93 E-value=0.22 Score=26.38 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=8.7
Q ss_pred cccEEEccCCcCCccchhhh
Q 042271 470 SIEQLHLSKNKIEGRLESII 489 (517)
Q Consensus 470 ~L~~L~l~~n~~~~~~~~~l 489 (517)
+|+.|++++|.++.+++.+|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 34444444444444433333
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.93 E-value=0.22 Score=26.38 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=8.7
Q ss_pred cccEEEccCCcCCccchhhh
Q 042271 470 SIEQLHLSKNKIEGRLESII 489 (517)
Q Consensus 470 ~L~~L~l~~n~~~~~~~~~l 489 (517)
+|+.|++++|.++.+++.+|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 34444444444444433333
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.56 E-value=0.0081 Score=51.13 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=74.1
Q ss_pred ccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccC
Q 042271 27 VGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM 106 (517)
Q Consensus 27 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 106 (517)
.+..+...+.||++.++...+.. .|+.+..+..|+++.|.+. ..|..+.....++.++++.|..+ ..|..++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 36788889999999888777766 7888899999999999887 77888888888888888887776 678888999999
Q ss_pred cEEEccccccC
Q 042271 107 RELHIDNNDLR 117 (517)
Q Consensus 107 ~~L~L~~~~~~ 117 (517)
+++++-.+.++
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 99999888765
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.30 E-value=0.31 Score=25.81 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=7.4
Q ss_pred cceEEeccccccCCcch
Q 042271 33 SLKFLSLINSSKNTILD 49 (517)
Q Consensus 33 ~L~~L~l~~~~~~~~~~ 49 (517)
+|++|++++|.+..++.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 34444444444444443
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.30 E-value=0.31 Score=25.81 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=7.4
Q ss_pred cceEEeccccccCCcch
Q 042271 33 SLKFLSLINSSKNTILD 49 (517)
Q Consensus 33 ~L~~L~l~~~~~~~~~~ 49 (517)
+|++|++++|.+..++.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 34444444444444443
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.66 E-value=1.4 Score=23.31 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=12.0
Q ss_pred CcccEEECCCCcCCCCCCc
Q 042271 493 PHLVTLDLSCNSLHGSIPN 511 (517)
Q Consensus 493 ~~L~~l~l~~n~~~~~~~~ 511 (517)
++|+.|++++|.++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777776 5554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.65 E-value=2.6 Score=22.40 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=12.1
Q ss_pred CCcccEEECCCCcCC
Q 042271 492 SPHLVTLDLSCNSLH 506 (517)
Q Consensus 492 ~~~L~~l~l~~n~~~ 506 (517)
+++|+.|++++|.|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357888899988886
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.36 E-value=2.9 Score=22.58 Aligned_cols=13 Identities=46% Similarity=0.705 Sum_probs=6.6
Q ss_pred cccEEEccCCcCC
Q 042271 470 SIEQLHLSKNKIE 482 (517)
Q Consensus 470 ~L~~L~l~~n~~~ 482 (517)
+|++|+|++|.++
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4455555555554
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.87 E-value=5.1 Score=21.07 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=12.2
Q ss_pred CCcccEEECCCCc-CC
Q 042271 492 SPHLVTLDLSCNS-LH 506 (517)
Q Consensus 492 ~~~L~~l~l~~n~-~~ 506 (517)
|++|++|++++|+ +|
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5789999999985 55
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.76 E-value=36 Score=33.15 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=7.1
Q ss_pred CCcEEEccCCcCC
Q 042271 302 GLMDLNLSRNAFN 314 (517)
Q Consensus 302 ~L~~L~l~~~~i~ 314 (517)
.+++|..++|...
T Consensus 355 R~q~l~~rdnnld 367 (553)
T KOG4242|consen 355 RVQVLLQRDNNLD 367 (553)
T ss_pred eeeEeeccccccc
Confidence 3555555555554
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=58.47 E-value=19 Score=34.91 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=29.2
Q ss_pred ccEEEccCCccccCCCCCCC----cccccEEEccCCcCCc----cchhhhcCCCcccEEECCCCc
Q 042271 448 LKILDLSNNSIFRTLPSCFS----PASIEQLHLSKNKIEG----RLESIIHDSPHLVTLDLSCNS 504 (517)
Q Consensus 448 L~~L~l~~n~l~~~~~~~~~----~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~l~l~~n~ 504 (517)
+..+.++.|.+......++. -+.+.+|++++|.... .++..++.-..++.+-.+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 45566666655444333322 3566666666666543 234444444455555555444
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.47 E-value=6.3 Score=38.82 Aligned_cols=85 Identities=19% Similarity=0.056 Sum_probs=54.9
Q ss_pred hhccCCCCcceEEeccccccCCcch--hhhhhcccCcEEEecCCcccCCccccccC--CCCCcEEEccCCccCCCCCc--
Q 042271 25 QIVGESKPSLKFLSLINSSKNTILD--QGLRQLVHLQELYIGGYDLRGSLPWCLAN--MTSLQVLYASSNELTGNISP-- 98 (517)
Q Consensus 25 ~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~-- 98 (517)
..+-.+.|.+..++|++|++..+.. ..-...++|+.|+|++|...-.....+.+ ...|++|.+.+|.+......
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhH
Confidence 3446788999999999888876642 12245789999999999322122233433 34678999999988633221
Q ss_pred -ch----hccccCcEE
Q 042271 99 -GL----CELVLMREL 109 (517)
Q Consensus 99 -~l----~~l~~L~~L 109 (517)
.+ ..+|+|..|
T Consensus 291 ~yv~~i~~~FPKL~~L 306 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRL 306 (585)
T ss_pred HHHHHHHHhcchheee
Confidence 11 246777655
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.39 E-value=18 Score=35.83 Aligned_cols=37 Identities=32% Similarity=0.350 Sum_probs=16.0
Q ss_pred cccccceEeccCCccCCC--cccccccCCcccEEEccCC
Q 042271 250 NNANLERLLLADNSLFGS--FWMPIHSHQKLATLDVSNN 286 (517)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 286 (517)
+.+.+..+.+++|.+... ........|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 334455555555544221 1111223345555555555
No 93
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=22.63 E-value=1.4e+02 Score=18.05 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=3.9
Q ss_pred cccccEEEc
Q 042271 468 PASIEQLHL 476 (517)
Q Consensus 468 ~~~L~~L~l 476 (517)
+++|++|.+
T Consensus 33 P~sl~~L~f 41 (44)
T PF05725_consen 33 PNSLKSLSF 41 (44)
T ss_pred CCCceEEEe
Confidence 344444443
Done!