Query 042271
Match_columns 517
No_of_seqs 239 out of 3087
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 07:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5E-57 1.7E-61 472.7 38.0 501 1-511 96-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.5E-57 1.2E-61 473.9 35.7 448 1-459 73-551 (768)
3 3t6q_A CD180 antigen; protein- 100.0 5.5E-53 1.9E-57 433.1 32.5 494 5-510 33-564 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-51 1.1E-55 425.5 39.4 502 5-510 25-626 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-49 5.3E-54 412.9 40.5 495 7-510 6-577 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-49 5.2E-54 407.5 35.2 487 5-511 32-563 (606)
7 3t6q_A CD180 antigen; protein- 100.0 5.4E-49 1.8E-53 403.5 37.3 494 8-515 15-545 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-49 4.1E-54 408.3 30.4 468 1-484 52-560 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 6.4E-47 2.2E-51 385.6 36.3 487 5-511 28-536 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-47 3.9E-52 406.0 28.8 485 4-510 23-564 (844)
11 3j0a_A TOLL-like receptor 5; m 100.0 8.2E-46 2.8E-50 391.9 32.9 480 30-516 22-549 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 5E-45 1.7E-49 371.7 29.8 468 1-486 48-535 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1E-44 3.5E-49 367.4 29.9 488 4-510 4-514 (549)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-44 4.6E-49 363.7 26.1 458 8-510 3-485 (520)
15 4eco_A Uncharacterized protein 100.0 9.4E-44 3.2E-48 363.9 23.8 441 6-484 82-602 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 1E-42 3.5E-47 350.0 26.9 440 35-516 3-467 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-41 4.7E-46 344.5 33.2 473 31-517 4-497 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 3E-42 1E-46 358.0 24.7 386 90-506 435-864 (876)
19 4eco_A Uncharacterized protein 100.0 4.9E-42 1.7E-46 351.2 24.6 357 113-507 192-601 (636)
20 4g8a_A TOLL-like receptor 4; l 100.0 9.7E-41 3.3E-45 344.8 33.0 490 6-510 53-584 (635)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-41 6.9E-46 343.3 27.2 463 5-511 31-515 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 1.8E-40 6.2E-45 344.6 25.9 361 114-513 435-847 (876)
23 3v47_A TOLL-like receptor 5B a 100.0 1.8E-38 6.2E-43 313.8 29.7 389 35-510 13-412 (455)
24 4g8a_A TOLL-like receptor 4; l 100.0 7.4E-38 2.5E-42 323.3 34.3 467 1-482 72-580 (635)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-38 7E-43 321.2 26.6 437 5-484 52-512 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 5.6E-37 1.9E-41 303.1 29.6 362 31-460 29-409 (455)
27 1o6v_A Internalin A; bacterial 100.0 1.2E-35 3.9E-40 293.7 31.4 345 32-461 46-390 (466)
28 1jl5_A Outer protein YOPM; leu 100.0 1.4E-36 5E-41 297.1 24.5 243 228-516 174-421 (454)
29 1o6v_A Internalin A; bacterial 100.0 2.8E-35 9.7E-40 291.0 33.1 348 53-484 43-390 (466)
30 1jl5_A Outer protein YOPM; leu 100.0 1.7E-34 5.8E-39 282.5 26.2 411 4-515 10-438 (454)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-34 7.1E-39 282.1 24.4 227 225-513 168-394 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 1.3E-33 4.4E-38 280.5 27.7 229 252-482 104-333 (477)
33 2id5_A Lingo-1, leucine rich r 100.0 7.1E-34 2.4E-38 282.4 23.4 319 36-435 15-333 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 4.2E-33 1.4E-37 272.9 22.8 395 28-514 38-451 (457)
35 4fmz_A Internalin; leucine ric 100.0 1.8E-31 6.2E-36 253.8 30.3 306 52-458 40-345 (347)
36 4fmz_A Internalin; leucine ric 100.0 4.2E-31 1.5E-35 251.2 31.4 307 28-435 40-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 1.9E-31 6.4E-36 257.7 28.7 310 30-435 43-352 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 1.7E-31 5.8E-36 257.9 25.2 310 3-387 43-352 (390)
39 1z7x_W Ribonuclease inhibitor; 100.0 2E-34 6.7E-39 285.5 2.7 388 32-485 3-443 (461)
40 1z7x_W Ribonuclease inhibitor; 100.0 5.2E-34 1.8E-38 282.4 2.7 379 56-509 3-443 (461)
41 3oja_B Anopheles plasmodium-re 100.0 2.1E-30 7.1E-35 263.8 28.7 310 31-436 50-359 (597)
42 3oja_B Anopheles plasmodium-re 100.0 1.6E-30 5.6E-35 264.5 25.4 310 3-387 49-358 (597)
43 3ogk_B Coronatine-insensitive 100.0 2.2E-31 7.6E-36 272.2 8.5 421 3-476 71-545 (592)
44 1xku_A Decorin; proteoglycan, 100.0 2.3E-28 8E-33 230.3 27.1 289 204-504 32-330 (330)
45 3ogk_B Coronatine-insensitive 100.0 5.1E-31 1.7E-35 269.5 9.6 410 48-508 65-528 (592)
46 1ogq_A PGIP-2, polygalacturona 100.0 6.9E-30 2.4E-34 238.1 16.0 249 252-505 50-303 (313)
47 1ogq_A PGIP-2, polygalacturona 100.0 2E-29 6.7E-34 235.1 17.8 237 276-516 50-290 (313)
48 1xku_A Decorin; proteoglycan, 100.0 3.3E-28 1.1E-32 229.3 26.1 296 56-457 31-330 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-28 4.8E-33 232.0 22.2 245 57-388 34-278 (332)
50 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-28 3.9E-33 232.5 20.9 288 204-504 34-331 (332)
51 2p1m_B Transport inhibitor res 100.0 2.4E-30 8.1E-35 264.7 0.9 207 250-458 287-518 (594)
52 2p1m_B Transport inhibitor res 100.0 1.9E-29 6.5E-34 258.0 5.8 239 218-458 280-543 (594)
53 2z66_A Variable lymphocyte rec 100.0 2.4E-27 8.2E-32 221.0 17.7 281 230-516 10-297 (306)
54 1ozn_A Reticulon 4 receptor; N 99.9 8.9E-27 3E-31 214.7 20.3 227 279-510 14-242 (285)
55 2z66_A Variable lymphocyte rec 99.9 2.6E-27 8.7E-32 220.8 16.1 249 255-509 10-264 (306)
56 2z80_A TOLL-like receptor 2, v 99.9 1.2E-27 4.2E-32 227.6 13.8 279 226-510 30-318 (353)
57 3zyj_A Leucine-rich repeat-con 99.9 1.6E-26 5.3E-31 226.6 21.7 230 276-509 64-295 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 2.1E-26 7.2E-31 226.5 21.9 231 276-510 75-307 (452)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-26 4.1E-31 213.8 15.3 268 230-503 14-284 (285)
60 4fcg_A Uncharacterized protein 99.9 8.3E-26 2.8E-30 211.7 20.0 224 276-506 81-314 (328)
61 2z62_A TOLL-like receptor 4, v 99.9 7E-26 2.4E-30 207.6 18.3 225 281-510 12-241 (276)
62 2z80_A TOLL-like receptor 2, v 99.9 1.5E-25 5.1E-30 213.2 19.2 281 28-339 27-315 (353)
63 1wwl_A Monocyte differentiatio 99.9 1.8E-26 6.1E-31 215.2 12.6 249 249-507 40-310 (312)
64 4fcg_A Uncharacterized protein 99.9 1.1E-25 3.7E-30 211.0 17.4 212 300-517 80-301 (328)
65 3zyj_A Leucine-rich repeat-con 99.9 7.1E-25 2.4E-29 214.8 22.0 247 228-482 44-292 (440)
66 3zyi_A Leucine-rich repeat-con 99.9 1.1E-24 3.7E-29 214.3 22.2 246 229-482 56-303 (452)
67 3o53_A Protein LRIM1, AGAP0063 99.9 5.3E-26 1.8E-30 212.5 10.8 268 229-512 12-282 (317)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.9E-26 1.3E-30 213.4 9.8 259 204-479 11-272 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-24 1.2E-28 215.7 21.9 266 204-515 41-306 (622)
70 1wwl_A Monocyte differentiatio 99.9 2.5E-25 8.5E-30 207.5 10.3 252 222-484 38-311 (312)
71 2o6q_A Variable lymphocyte rec 99.9 9.3E-24 3.2E-28 192.6 20.2 205 277-510 17-222 (270)
72 3oja_A Leucine-rich immune mol 99.9 4.2E-25 1.4E-29 218.2 11.2 246 251-511 33-287 (487)
73 3rfs_A Internalin B, repeat mo 99.9 1.5E-24 5.1E-29 197.9 12.5 205 300-516 40-245 (272)
74 3oja_A Leucine-rich immune mol 99.9 2.7E-24 9.1E-29 212.5 14.0 216 276-506 34-250 (487)
75 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-22 4.4E-27 204.3 25.3 93 56-164 40-132 (622)
76 2o6q_A Variable lymphocyte rec 99.9 1.6E-22 5.4E-27 184.4 19.5 206 252-462 16-221 (270)
77 1p9a_G Platelet glycoprotein I 99.9 3.3E-22 1.1E-26 183.6 19.6 203 272-482 6-208 (290)
78 3rfs_A Internalin B, repeat mo 99.9 1.1E-22 3.9E-27 185.5 15.6 204 301-511 19-223 (272)
79 3goz_A Leucine-rich repeat-con 99.9 1.7E-23 5.9E-28 199.3 9.7 252 232-484 3-299 (362)
80 2ast_B S-phase kinase-associat 99.9 3.2E-23 1.1E-27 195.9 10.4 199 228-432 48-257 (336)
81 1p9a_G Platelet glycoprotein I 99.9 8.5E-22 2.9E-26 180.9 18.7 202 249-459 7-208 (290)
82 4glp_A Monocyte differentiatio 99.9 2.1E-22 7.1E-27 187.6 14.7 227 276-507 64-308 (310)
83 2z62_A TOLL-like receptor 4, v 99.9 1E-21 3.6E-26 179.8 18.9 203 253-458 29-236 (276)
84 3goz_A Leucine-rich repeat-con 99.9 1.9E-22 6.5E-27 192.1 13.6 254 208-461 3-299 (362)
85 2ast_B S-phase kinase-associat 99.9 2.7E-22 9.1E-27 189.6 12.8 255 252-515 47-315 (336)
86 2xwt_C Thyrotropin receptor; s 99.9 4.4E-22 1.5E-26 178.1 12.6 203 291-504 25-237 (239)
87 3m19_A Variable lymphocyte rec 99.9 2.4E-21 8.1E-26 174.5 17.0 158 351-508 36-194 (251)
88 2ca6_A RAN GTPase-activating p 99.9 1.3E-22 4.3E-27 195.4 9.1 240 249-509 29-319 (386)
89 1h6u_A Internalin H; cell adhe 99.9 3.2E-21 1.1E-25 178.9 17.5 196 272-484 37-232 (308)
90 2xwt_C Thyrotropin receptor; s 99.9 1.1E-21 3.8E-26 175.5 13.0 190 324-516 30-228 (239)
91 2ca6_A RAN GTPase-activating p 99.8 1.2E-21 4.3E-26 188.5 9.7 244 218-462 23-319 (386)
92 3m19_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 166.8 17.2 180 277-461 15-194 (251)
93 4glp_A Monocyte differentiatio 99.8 2.8E-21 9.5E-26 180.0 10.2 202 277-483 92-308 (310)
94 1h6u_A Internalin H; cell adhe 99.8 4.3E-20 1.5E-24 171.4 17.2 197 249-463 38-234 (308)
95 2o6s_A Variable lymphocyte rec 99.8 3.4E-20 1.2E-24 161.9 11.8 179 304-492 10-188 (208)
96 2o6s_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 155.3 13.1 176 279-466 10-185 (208)
97 4ay9_X Follicle-stimulating ho 99.8 6E-19 2.1E-23 167.0 14.9 241 255-504 12-257 (350)
98 1h6t_A Internalin B; cell adhe 99.8 1.4E-18 4.9E-23 159.6 14.1 173 300-486 45-217 (291)
99 3cvr_A Invasion plasmid antige 99.8 1.4E-18 4.7E-23 172.9 14.9 186 277-491 60-252 (571)
100 2xot_A Amphoterin-induced prot 99.8 6.4E-19 2.2E-23 167.5 12.0 178 328-509 21-205 (361)
101 4ay9_X Follicle-stimulating ho 99.8 2.2E-18 7.5E-23 163.1 14.8 224 279-510 12-240 (350)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 4.7E-18 1.6E-22 149.2 14.9 155 328-509 14-169 (220)
103 2v9t_B SLIT homolog 2 protein 99.8 4E-18 1.4E-22 149.7 14.2 150 328-481 14-164 (220)
104 1h6t_A Internalin B; cell adhe 99.8 4.8E-18 1.6E-22 156.1 14.5 193 253-463 25-217 (291)
105 1m9s_A Internalin B; cell inva 99.8 2.4E-18 8.3E-23 173.1 13.0 203 276-495 21-223 (605)
106 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.8E-22 147.9 15.4 137 374-510 40-176 (229)
107 1m9s_A Internalin B; cell inva 99.8 4.3E-18 1.5E-22 171.3 13.3 195 252-464 21-215 (605)
108 4ezg_A Putative uncharacterize 99.7 5.5E-18 1.9E-22 146.3 11.8 151 349-506 43-194 (197)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 3.1E-17 1.1E-21 144.0 14.7 152 279-459 14-166 (220)
110 3sb4_A Hypothetical leucine ri 99.7 9.7E-18 3.3E-22 157.3 10.5 196 300-500 100-328 (329)
111 2v9t_B SLIT homolog 2 protein 99.7 4.4E-17 1.5E-21 143.0 13.9 151 279-434 14-164 (220)
112 4ezg_A Putative uncharacterize 99.7 4.9E-17 1.7E-21 140.3 13.8 150 300-458 43-193 (197)
113 2xot_A Amphoterin-induced prot 99.7 1.8E-17 6.1E-22 157.5 12.1 156 277-434 40-201 (361)
114 3sb4_A Hypothetical leucine ri 99.7 9.1E-18 3.1E-22 157.5 9.8 293 30-405 23-328 (329)
115 3cvr_A Invasion plasmid antige 99.7 6.2E-17 2.1E-21 161.0 15.7 179 253-461 60-245 (571)
116 1xeu_A Internalin C; cellular 99.7 1.2E-17 4E-22 151.0 7.8 172 300-486 18-189 (263)
117 4fs7_A Uncharacterized protein 99.7 4.8E-16 1.6E-20 149.6 19.1 335 44-451 59-393 (394)
118 4fs7_A Uncharacterized protein 99.7 4.1E-16 1.4E-20 150.0 17.4 334 68-498 59-393 (394)
119 3e6j_A Variable lymphocyte rec 99.7 2.8E-16 9.7E-21 138.9 14.9 152 278-435 21-172 (229)
120 1xeu_A Internalin C; cellular 99.7 2.7E-17 9.3E-22 148.6 8.0 173 274-463 17-189 (263)
121 4fdw_A Leucine rich hypothetic 99.7 7E-16 2.4E-20 147.5 17.7 265 226-505 112-382 (401)
122 4fdw_A Leucine rich hypothetic 99.7 2.3E-15 8E-20 143.9 17.6 216 253-479 158-380 (401)
123 1dce_A Protein (RAB geranylger 99.7 1.9E-17 6.6E-22 165.6 2.6 203 273-500 346-567 (567)
124 2ell_A Acidic leucine-rich nuc 99.6 5.2E-16 1.8E-20 130.2 10.1 138 373-513 23-166 (168)
125 1w8a_A SLIT protein; signaling 99.6 8.2E-16 2.8E-20 131.8 11.3 128 353-483 11-140 (192)
126 2ell_A Acidic leucine-rich nuc 99.6 2.3E-15 7.9E-20 126.3 12.7 135 29-167 21-161 (168)
127 2wfh_A SLIT homolog 2 protein 99.6 3.3E-15 1.1E-19 127.9 12.1 109 399-508 32-141 (193)
128 1w8a_A SLIT protein; signaling 99.6 6.7E-16 2.3E-20 132.4 7.0 130 328-461 11-141 (192)
129 1dce_A Protein (RAB geranylger 99.6 4.8E-17 1.6E-21 162.7 -0.5 194 300-510 348-550 (567)
130 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.5E-20 125.6 7.5 129 29-161 14-148 (149)
131 2o6r_A Variable lymphocyte rec 99.6 6.1E-15 2.1E-19 124.8 12.3 113 398-510 28-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.6 2.1E-15 7.2E-20 123.7 7.1 125 375-501 18-148 (149)
133 4gt6_A Cell surface protein; l 99.6 2.5E-13 8.5E-18 130.6 22.1 132 319-458 259-390 (394)
134 4b8c_D Glucose-repressible alc 99.6 7.8E-16 2.7E-20 158.9 4.1 181 316-506 215-404 (727)
135 2wfh_A SLIT homolog 2 protein 99.6 2.2E-14 7.4E-19 122.8 12.1 125 35-164 13-137 (193)
136 4gt6_A Cell surface protein; l 99.5 8.4E-13 2.9E-17 126.9 22.5 134 341-480 256-389 (394)
137 4b8c_D Glucose-repressible alc 99.5 3.5E-15 1.2E-19 154.1 5.9 187 301-503 173-369 (727)
138 2o6r_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 117.1 12.8 128 34-165 9-136 (177)
139 1a9n_A U2A', U2A'; complex (nu 99.5 4.9E-14 1.7E-18 119.0 10.2 132 28-165 15-152 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 8.9E-19 120.7 7.4 130 372-505 17-152 (176)
141 1ds9_A Outer arm dynein; leuci 99.5 1.3E-15 4.5E-20 131.4 -3.2 148 4-159 17-180 (198)
142 3g39_A Variable lymphocyte rec 99.5 2.8E-13 9.6E-18 113.3 11.0 108 400-510 11-119 (170)
143 1ds9_A Outer arm dynein; leuci 99.4 1.9E-14 6.3E-19 124.2 1.3 152 300-459 17-185 (198)
144 3un9_A NLR family member X1; l 99.4 1.3E-14 4.3E-19 137.5 0.1 161 300-460 71-253 (372)
145 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 110.0 11.0 106 401-509 15-121 (174)
146 3un9_A NLR family member X1; l 99.4 3.4E-14 1.2E-18 134.5 1.1 183 324-506 71-283 (372)
147 3g39_A Variable lymphocyte rec 99.4 2.5E-12 8.5E-17 107.5 10.2 103 35-140 12-114 (170)
148 4h09_A Hypothetical leucine ri 99.4 7.2E-11 2.5E-15 112.9 21.1 146 272-424 213-358 (379)
149 2r9u_A Variable lymphocyte rec 99.3 4E-12 1.4E-16 106.6 10.3 103 35-140 15-117 (174)
150 4h09_A Hypothetical leucine ri 99.3 6.2E-10 2.1E-14 106.4 22.0 145 321-471 213-357 (379)
151 2ifg_A High affinity nerve gro 99.1 1.2E-10 4E-15 110.0 9.9 132 378-511 12-146 (347)
152 2ifg_A High affinity nerve gro 99.1 2.5E-10 8.6E-15 107.7 8.6 104 354-460 12-117 (347)
153 2ra8_A Uncharacterized protein 99.0 6E-10 2.1E-14 104.4 8.6 155 345-504 167-341 (362)
154 2ra8_A Uncharacterized protein 98.9 2.9E-09 9.9E-14 99.8 10.4 156 298-457 169-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 3.2E-09 1.1E-13 89.7 2.0 118 369-506 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 6.9E-08 2.4E-12 81.5 5.6 45 319-363 30-78 (185)
157 3e4g_A ATP synthase subunit S, 98.5 9.7E-08 3.3E-12 78.2 4.1 82 326-408 62-149 (176)
158 3e4g_A ATP synthase subunit S, 98.4 6.6E-08 2.3E-12 79.2 2.6 83 57-139 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.4 1.3E-07 4.4E-12 83.8 3.1 106 28-135 137-258 (267)
160 3rw6_A Nuclear RNA export fact 98.3 1.2E-07 4.1E-12 84.0 1.8 109 51-161 136-259 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 8E-06 2.8E-10 68.2 2.5 87 418-504 66-168 (197)
162 3rfe_A Platelet glycoprotein I 97.4 0.00025 8.7E-09 55.2 6.3 59 450-509 12-71 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00015 5E-09 60.6 4.0 86 418-503 37-136 (197)
164 3rfe_A Platelet glycoprotein I 96.2 0.0084 2.9E-07 46.5 6.0 36 105-140 32-67 (130)
165 2lz0_A Uncharacterized protein 81.1 1.5 5.2E-05 31.7 3.7 42 413-455 11-52 (100)
166 2lz0_A Uncharacterized protein 79.7 1.7 5.9E-05 31.4 3.6 39 368-407 14-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-57 Score=472.74 Aligned_cols=501 Identities=29% Similarity=0.377 Sum_probs=269.8
Q ss_pred CCCCCcCceeeCCCccccccccchh--hccCCCCcceEEeccccccCC-cchhhhhhcccCcEEEecCCcccCCcccc--
Q 042271 1 FRKFKNLEHLDMGEVQVDVNTSFLQ--IVGESKPSLKFLSLINSSKNT-ILDQGLRQLVHLQELYIGGYDLRGSLPWC-- 75 (517)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-- 75 (517)
|+++++||+|++++| .+.+.++. . ++++++|++|++++|.+.. ++...+.++++|++|++++|.+.+..+..
T Consensus 96 ~~~l~~L~~L~Ls~n--~l~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 96 FKCSASLTSLDLSRN--SLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCTTCCEEECCSS--EEEEEGGGGGG-GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred hccCCCCCEEECCCC--cCCCcCCChHH-HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 456777888888877 55555554 3 6777777777777555432 22212245556666666665555444433
Q ss_pred -cc----------------------CCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcE
Q 042271 76 -LA----------------------NMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRV 132 (517)
Q Consensus 76 -l~----------------------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 132 (517)
+. .+++|++|++++|.+.+..|. ++.+++|++|++++|.+++..|.++..+++|++
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred hhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 33 445555555555555544443 555555555555555555555555555555555
Q ss_pred EeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccc
Q 042271 133 LDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG 212 (517)
Q Consensus 133 L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 212 (517)
|++++|.+.+.++. . .+++|++|++++|.+. +.........++.|+.+++............+....+|+++++.+
T Consensus 252 L~Ls~n~l~~~~~~--~-~l~~L~~L~L~~n~l~-~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 252 LNISSNQFVGPIPP--L-PLKSLQYLSLAENKFT-GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp EECCSSCCEESCCC--C-CCTTCCEEECCSSEEE-ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred EECCCCcccCccCc--c-ccCCCCEEECcCCccC-CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 55555555433332 1 3444444444444421 011101111123344444433222222122222223344444444
Q ss_pred cccCCCcccc-ccccCCcCEeeccCCcCCCCCChhhhhc--------------------------ccccceEeccCCccC
Q 042271 213 YIDGGTFPKF-LYHQHDLKNADLSHLNLSGKFPNWLVEN--------------------------NANLERLLLADNSLF 265 (517)
Q Consensus 213 ~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~--------------------------~~~L~~L~l~~~~~~ 265 (517)
|.+.+.+|.. +..+++|+.|++++|.+.+.+|..+... +++|++|++++|.+.
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 4333333322 3333344444444443333333332111 234444444444444
Q ss_pred CCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhH
Q 042271 266 GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERM 345 (517)
Q Consensus 266 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 345 (517)
+..+..+..+++|+.|++++|.+++.+|..+.. +++|+.|++++|.+.+.++..+..+++|++|++++|.+.+.+|..
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~- 485 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG- 485 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-
Confidence 444445555566666666666655555555444 556666666666666556666666666666666666665444433
Q ss_pred HhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchh--------
Q 042271 346 AARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW-------- 417 (517)
Q Consensus 346 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------- 417 (517)
+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.+|..
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 334666666666666666555666666666666666666666566666666666666666666655443332
Q ss_pred --------------------------------------------------------------hcCCCCCcEEECCCCccc
Q 042271 418 --------------------------------------------------------------LGNLSALEDIIMPNNNLE 435 (517)
Q Consensus 418 --------------------------------------------------------------~~~~~~L~~L~l~~~~~~ 435 (517)
+..+++|+.|++++|++.
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 222355666666666666
Q ss_pred ccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCc
Q 042271 436 GPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN 511 (517)
Q Consensus 436 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~ 511 (517)
+.+|..+..+++|+.|++++|++++..|..+. +++|++|++++|++++.+|..|..+++|++|++++|+++|.+|.
T Consensus 646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 66666666666777777777766666665554 66677777777777666666667677777777777777666665
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-57 Score=473.94 Aligned_cols=448 Identities=29% Similarity=0.327 Sum_probs=261.9
Q ss_pred CCCCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchh--hhhhcccCcEEEecCCcccCCccccc-c
Q 042271 1 FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQ--GLRQLVHLQELYIGGYDLRGSLPWCL-A 77 (517)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l-~ 77 (517)
|..+++|+.++++.+ .+.. .+.. ++.+++|++|++++|.+....+. .++++++|++|++++|.+.+..|..+ .
T Consensus 73 l~~L~~L~~l~~~~~--~~~~-l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 73 LLSLTGLESLFLSNS--HING-SVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp TTTCTTCCEEECTTS--CEEE-CCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred HhccCcccccCCcCC--CcCC-Cchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 456788888888888 3322 3344 89999999999998887643333 78999999999999999987777665 8
Q ss_pred CCCCCcEEEccCCccCCCCCcc---hhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCC
Q 042271 78 NMTSLQVLYASSNELTGNISPG---LCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTS 154 (517)
Q Consensus 78 ~l~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~ 154 (517)
++++|++|++++|.+++..+.. +.++++|++|++++|.+++..+ +..+++|++|++++|.+.+.++. +..+++
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~ 224 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSA 224 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCS
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCC
Confidence 8999999999999988665554 5556666666666665554333 24555555555555555432222 455555
Q ss_pred CceeecccCCCCCCCCCccccc----------------------CcccccccccccccccccccCCCCCc-ceeeEeecc
Q 042271 155 IEELILSNNHFFQSPISLEPLF----------------------NLSKRKTFDSEICAETESHYNSLTPK-FQLTFISLS 211 (517)
Q Consensus 155 L~~L~l~~~~~~~~~~~~~~l~----------------------~l~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~l~l~ 211 (517)
|++|++++|.+.. .....+. .++.|+.+++............+... .+|++++++
T Consensus 225 L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 225 LQHLDISGNKLSG--DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp CCEEECCSSCCCS--CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred CCEEECcCCcCCC--cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence 5555555554311 0111233 44555555555543332222223222 577788888
Q ss_pred ccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCC-cccEEEccCCcccc
Q 042271 212 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQ-KLATLDVSNNFFRG 290 (517)
Q Consensus 212 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 290 (517)
+|.+.+..|..+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+++
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 77777777777888888888888888877777776556778888888888877655555454444 55555555555544
Q ss_pred cCChhhhh-ccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccccccc
Q 042271 291 HIPVEIGT-YLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSE 369 (517)
Q Consensus 291 ~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 369 (517)
.++..+.. .+++|++|++++|.+++.++..+..+++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+..+..
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCHH
Confidence 33333221 1334555555555544444555555555555555555554333332 223445555555555554444444
Q ss_pred ccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCcc
Q 042271 370 KFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLK 449 (517)
Q Consensus 370 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 449 (517)
+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.+|.++..+++|+.|++++|++.+.+|..+..+++|+
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 44455555555555554444444444455555555555554444444444445555555555544444444444444444
Q ss_pred EEEccCCccc
Q 042271 450 ILDLSNNSIF 459 (517)
Q Consensus 450 ~L~l~~n~l~ 459 (517)
.|++++|+++
T Consensus 542 ~L~Ls~N~l~ 551 (768)
T 3rgz_A 542 WLDLNTNLFN 551 (768)
T ss_dssp EEECCSSEEE
T ss_pred EEECCCCccC
Confidence 4444444443
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.5e-53 Score=433.09 Aligned_cols=494 Identities=19% Similarity=0.165 Sum_probs=404.7
Q ss_pred CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271 5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV 84 (517)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 84 (517)
+++++|++++| .+.+..+.. ++.+++|++|++++|.+..+.+.+|+++++|++|++++|.+.+..|..+.++++|++
T Consensus 33 ~~l~~L~Ls~n--~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFN--VLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTC--CCSEECTTT-STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCC--ccCcCChhH-hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 36899999999 555554544 889999999999999888887778999999999999999998778888999999999
Q ss_pred EEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCc--eeeccc
Q 042271 85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIE--ELILSN 162 (517)
Q Consensus 85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~--~L~l~~ 162 (517)
|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+.+ +++..+..+++|+ +|++++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTT
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEecCC
Confidence 9999999886556678899999999999999886544555568999999999998865 4444678888888 888888
Q ss_pred CCCCCCCCCcccccCcccccccccccccc-----------------------------cccccCCCCCcceeeEeecccc
Q 042271 163 NHFFQSPISLEPLFNLSKRKTFDSEICAE-----------------------------TESHYNSLTPKFQLTFISLSGY 213 (517)
Q Consensus 163 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~-----------------------------~~~~~~~~~~~~~L~~l~l~~~ 213 (517)
|.+........ ....++.+++..... ....+..+. ..+++.+++.++
T Consensus 189 n~l~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~-~~~L~~L~l~~n 264 (606)
T 3t6q_A 189 NDIAGIEPGAF---DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC-EMSVESINLQKH 264 (606)
T ss_dssp CCCCEECTTTT---TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG-GSEEEEEECTTC
T ss_pred CccCccChhHh---hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh-cCceeEEEeecC
Confidence 87544332221 223344444433210 001111111 127999999999
Q ss_pred ccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCC
Q 042271 214 IDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIP 293 (517)
Q Consensus 214 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 293 (517)
.+....+..+..+++|+.++++++.+. .+|..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 888887888999999999999999988 666654 678999999999999988777788999999999999998876777
Q ss_pred hhhhhccCCCcEEEccCCcCCCCC--chhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccc-cc
Q 042271 294 VEIGTYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFS-EK 370 (517)
Q Consensus 294 ~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~ 370 (517)
......+++|++|++++|.+.+.. +..+..+++|++|++++|.+. ..+...+..+++|+.|++++|.+.+..+. .+
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 665555899999999999988654 667899999999999999988 44555666799999999999999866543 48
Q ss_pred cCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCc---cchhhcCCCCCcEEECCCCcccccccccccCCCC
Q 042271 371 FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGE---IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNS 447 (517)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 447 (517)
..+++|++|++++|.+....+..+..+++|++|++++|++.+. .+..+..+++|+.|++++|.+.+..|..|..+++
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccC
Confidence 8899999999999999877888899999999999999998752 2356889999999999999999888889999999
Q ss_pred ccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 448 LKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 448 L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
|++|++++|++++..+..+. ++.| +|++++|.+++.++..|..+++|+.+++++|++++.++
T Consensus 502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999888777666 7888 99999999999999999999999999999999998876
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-51 Score=425.51 Aligned_cols=502 Identities=20% Similarity=0.140 Sum_probs=313.3
Q ss_pred CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271 5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV 84 (517)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 84 (517)
+++++|++++| .+.+..+.. ++++++|++|+++++.+..+.+++++++++|++|++++|.+....+.+|.++++|++
T Consensus 25 ~~l~~L~Ls~n--~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHN--QLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSS--CCCCCCGGG-GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCC--CCCCcCHHH-HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 47899999999 555544444 888999999999988888888778999999999999999998666667899999999
Q ss_pred EEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcc--cCCCCCceeeccc
Q 042271 85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPL--MHLTSIEELILSN 162 (517)
Q Consensus 85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l--~~l~~L~~L~l~~ 162 (517)
|++++|.+.+..+..++++++|++|++++|.+++..|..+.++++|++|++++|.+.+ .+...+ ..+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEECCC
Confidence 9999998886666778999999999999999988888888899999999999998864 332233 2457888888888
Q ss_pred CCCCCCCCC-cccccCc------------------------ccccccccccccccccccCCCCCcc--eeeEeecccccc
Q 042271 163 NHFFQSPIS-LEPLFNL------------------------SKRKTFDSEICAETESHYNSLTPKF--QLTFISLSGYID 215 (517)
Q Consensus 163 ~~~~~~~~~-~~~l~~l------------------------~~L~~l~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~ 215 (517)
|.+...... +..+.++ +.++.+++............+.... +|+.+++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 875332211 1111111 2333333333222111111111111 255555555555
Q ss_pred CCCccccccccCCcCEeeccCCcCCCCCChh--------------------------------hhhcccccceEeccCCc
Q 042271 216 GGTFPKFLYHQHDLKNADLSHLNLSGKFPNW--------------------------------LVENNANLERLLLADNS 263 (517)
Q Consensus 216 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~--------------------------------~~~~~~~L~~L~l~~~~ 263 (517)
....+..+..+++|+.+++++|.+.+..+.. .+..+++|++|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 4444455555555555555555544332222 22345566666666666
Q ss_pred cCCCcccccccCCcccEEEccCCcccc-cCChhhhhc--cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccc
Q 042271 264 LFGSFWMPIHSHQKLATLDVSNNFFRG-HIPVEIGTY--LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGE 340 (517)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~--~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~ 340 (517)
+.+.....+..+++|++|++++|.+.. .++...+.. .++|+.|++++|.+++..+.++..+++|++|++++|.+.+.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 655555556666666666666654321 111111111 24566666666766666666777778888888888877766
Q ss_pred cchhHHhhcCCCcEEEccCCcccccccccc--------------------------cCCCCCcEEEccCcccccccchhh
Q 042271 341 IPERMAARCFSLEILALSNNSLQGHIFSEK--------------------------FNLTNLMTLQLDGNKFTGEILESL 394 (517)
Q Consensus 341 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~--------------------------~~~~~L~~L~l~~~~~~~~~~~~~ 394 (517)
++...+.++++|+.|++++|.+.+.....+ ..+++|++|++++|.+....+..+
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 666666667777777777776654443344 444555555555555554444445
Q ss_pred hhcccCCeEEecCCCCCCccc--------hhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC
Q 042271 395 SKCYLLEGLYLSDNHLTGEIP--------RWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF 466 (517)
Q Consensus 395 ~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 466 (517)
.++++|+.|++++|.+.+..+ ..+.++++|+.|++++|.+....+..|.++++|++|++++|+++...+..+
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 555555555555555542211 124555556666666665553333456666666666666666665555544
Q ss_pred C-cccccEEEccCCcCCccchhhhc-CCCcccEEECCCCcCCCCCC
Q 042271 467 S-PASIEQLHLSKNKIEGRLESIIH-DSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 467 ~-~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~l~l~~n~~~~~~~ 510 (517)
. +++|++|++++|.+++..+..|. .+++|+++++++|++.|.++
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 3 56666666666666666666665 56667777777777766665
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-49 Score=412.86 Aligned_cols=495 Identities=21% Similarity=0.194 Sum_probs=342.2
Q ss_pred CceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEE
Q 042271 7 LEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLY 86 (517)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 86 (517)
-++++.+++ .+. .+|.. + .+++++|+++++.+..++...|+++++|++|++++|.+.+..|.++.++++|++|+
T Consensus 6 ~~~~~cs~~--~L~-~ip~~-~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 6 HEVADCSHL--KLT-QVPDD-L--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79 (680)
T ss_dssp SSEEECCSS--CCS-SCCSC-S--CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEE
T ss_pred CCeeECCCC--Ccc-ccccc-c--CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEE
Confidence 467788877 332 34432 2 37899999999999999988899999999999999999988899999999999999
Q ss_pred ccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCC
Q 042271 87 ASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFF 166 (517)
Q Consensus 87 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 166 (517)
+++|.+....+..|+.+++|++|++++|.+++..|.+|.++++|++|++++|.+.+. +...+..+++|++|++++|.+.
T Consensus 80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCC
T ss_pred CCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCccc
Confidence 999999954445799999999999999999977778999999999999999999764 4447889999999999999854
Q ss_pred CCCCCcccccCccccccccccccccccc---ccCCCC------------------------CcceeeEeeccccccCCCc
Q 042271 167 QSPISLEPLFNLSKRKTFDSEICAETES---HYNSLT------------------------PKFQLTFISLSGYIDGGTF 219 (517)
Q Consensus 167 ~~~~~~~~l~~l~~L~~l~l~~~~~~~~---~~~~~~------------------------~~~~L~~l~l~~~~~~~~~ 219 (517)
...........++.|+.+++........ .+.... ...+|+.+.+.++.+.+..
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence 3322222233557788888876432211 111111 1246788888888888777
Q ss_pred cccccccCC--cCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccc-----cC
Q 042271 220 PKFLYHQHD--LKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRG-----HI 292 (517)
Q Consensus 220 ~~~~~~~~~--L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~ 292 (517)
+.++..++. |+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+..+++|+.|+++++...+ .+
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred hhHhhccCcCCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 888887755 9999999999986665554 788999999999999887777778888888888887754332 11
Q ss_pred C---hhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccc----------------------------ccccc
Q 042271 293 P---VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ----------------------------LTGEI 341 (517)
Q Consensus 293 ~---~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----------------------------i~~~~ 341 (517)
| ...+..+++|++|++++|.+.+..+..+..+++|++|++++|. +. .+
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~ 396 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KI 396 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EE
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-eE
Confidence 1 1223347788888888888877666677777777777776654 33 22
Q ss_pred chhHHhhcCCCcEEEccCCccccccc-ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC--Cccchhh
Q 042271 342 PERMAARCFSLEILALSNNSLQGHIF-SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT--GEIPRWL 418 (517)
Q Consensus 342 ~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~ 418 (517)
+...+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. +..|..+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 22344456677777777776654332 45666777777777777665444444555555555555555443 2345555
Q ss_pred cCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCC---------CCCcccccEEEccCCcCCccchhhh
Q 042271 419 GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS---------CFSPASIEQLHLSKNKIEGRLESII 489 (517)
Q Consensus 419 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~~~~~L~~L~l~~n~~~~~~~~~l 489 (517)
..+++|+.|++++|.+.+..+..|.++++|++|++++|++++.... ...+++|++|++++|.++.+++..|
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 6666666666666666655455556666666666666655443211 1124555555555555554444455
Q ss_pred cCCCcccEEECCCCcCCCCCC
Q 042271 490 HDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 490 ~~~~~L~~l~l~~n~~~~~~~ 510 (517)
.++++|+.|++++|.+++..+
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCcceeECCCCCCCcCCH
Confidence 555555555555555553333
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-49 Score=407.54 Aligned_cols=487 Identities=20% Similarity=0.177 Sum_probs=338.8
Q ss_pred CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271 5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV 84 (517)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 84 (517)
+++|+|++++| .+.+..+.. ++.+++|++|++++|.+..+++.+|+++++|++|++++|.+.+..|..|.++++|++
T Consensus 32 ~~l~~L~Ls~n--~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFN--PLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTS--CCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCC--CcCEeChhh-ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 46788888888 444444434 778888888888877777777667788888888888888887666777888888888
Q ss_pred EEccCCccCCCCCcchhccccCcEEEccccccCC-cccccccCCCCCcEEeccCCccccccCCCcccCCCCCc----eee
Q 042271 85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIE----ELI 159 (517)
Q Consensus 85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~----~L~ 159 (517)
|++++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+.+ ++...+..+++|+ +++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceee
Confidence 8888887775555667888888888888888765 457778888888888888887765 3333566655554 688
Q ss_pred cccCCCCCCCCCcccccCccccccccccccccc----ccccCCCCC-----------------------------cceee
Q 042271 160 LSNNHFFQSPISLEPLFNLSKRKTFDSEICAET----ESHYNSLTP-----------------------------KFQLT 206 (517)
Q Consensus 160 l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~----~~~~~~~~~-----------------------------~~~L~ 206 (517)
+++|.+...+... + ...+|+.+++...... +..+..+.. ...++
T Consensus 188 l~~n~l~~~~~~~--~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 188 MSLNPIDFIQDQA--F-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp CTTCCCCEECTTT--T-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred ccCCCcceeCccc--c-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 8877754332221 2 2225666666553221 111111110 00233
Q ss_pred Eeec-cccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccC
Q 042271 207 FISL-SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSN 285 (517)
Q Consensus 207 ~l~l-~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 285 (517)
.+.+ ..+...+..+. +..+++|+.+++.++.+. .++ . +..+++|++|++++|.+. .++ .+ .+++|++|++++
T Consensus 265 ~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~-l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~ 337 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-D-VPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTM 337 (606)
T ss_dssp EEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-C-CCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEES
T ss_pred heeccccccccccccc-cccCCCCCEEEecCccch-hhh-h-ccccccCCEEEcccccCc-ccc-cC-CCCccceeeccC
Confidence 3333 22333344444 667778888888887775 344 2 356678888888888773 333 34 778888888888
Q ss_pred CcccccCChhhhhccCCCcEEEccCCcCCCC--CchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc
Q 042271 286 NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGS--IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363 (517)
Q Consensus 286 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~ 363 (517)
|...+.. .+. .+++|++|++++|.+++. .+..+..+++|++|++++|.+. .++ ..+..+++|+.|++++|.+.
T Consensus 338 n~~~~~~--~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 338 NKGSISF--KKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp CSSCEEC--CCC-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEE
T ss_pred CcCccch--hhc-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccC
Confidence 7543333 222 377888888888877644 3677788888888888888876 444 34456788888888888887
Q ss_pred cccc-ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCC-ccchhhcCCCCCcEEECCCCccccccccc
Q 042271 364 GHIF-SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG-EIPRWLGNLSALEDIIMPNNNLEGPIPIE 441 (517)
Q Consensus 364 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 441 (517)
+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..+..
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 6655 567788888888888888877777778888888888888888875 36777888888888888888888777777
Q ss_pred ccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCC-cccEEECCCCcCCCCCCc
Q 042271 442 FCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSP-HLVTLDLSCNSLHGSIPN 511 (517)
Q Consensus 442 ~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~l~l~~n~~~~~~~~ 511 (517)
+.++++|++|++++|++++..+..+. +++|++|++++|.++..++. +..++ +|++|++++|++++.++.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCCcc
Confidence 88888888888888888777666555 78888888888888854444 77776 588888888888877763
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.4e-49 Score=403.48 Aligned_cols=494 Identities=16% Similarity=0.128 Sum_probs=395.2
Q ss_pred ceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEc
Q 042271 8 EHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYA 87 (517)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 87 (517)
++++.++. .+ ..+|.. -.+.+++|+++++.+..+++.+|+++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus 15 ~~~~c~~~--~l-~~iP~~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 15 KTYNCENL--GL-NEIPGT---LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TEEECTTS--CC-SSCCTT---SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ceEECCCC--Cc-ccCcCC---CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeC
Confidence 45666655 32 233322 2347999999999999998889999999999999999999888999999999999999
Q ss_pred cCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCC
Q 042271 88 SSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQ 167 (517)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 167 (517)
++|.+.+..|..++.+++|++|++++|.+++..+..+.++++|++|++++|.+.+ ++...+..+++|++|++++|.+..
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCE
T ss_pred CCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccc
Confidence 9999998888899999999999999999997778889999999999999999975 332245669999999999998532
Q ss_pred CCCCcccccCccccc--ccccccccccccccCCCCCcceeeEeeccccccC--------------------------CCc
Q 042271 168 SPISLEPLFNLSKRK--TFDSEICAETESHYNSLTPKFQLTFISLSGYIDG--------------------------GTF 219 (517)
Q Consensus 168 ~~~~~~~l~~l~~L~--~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--------------------------~~~ 219 (517)
.....+..++.++ .+++.......... .......++.+++.++... ...
T Consensus 168 --~~~~~~~~l~~L~~l~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 168 --LSKEDMSSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp --ECHHHHHTTTTCCSEEEECTTCCCCEECT-TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred --cChhhhhhhcccceeEEecCCCccCccCh-hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 2223466777777 56666543322222 2223347888888766410 001
Q ss_pred cccccccC--CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhh
Q 042271 220 PKFLYHQH--DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIG 297 (517)
Q Consensus 220 ~~~~~~~~--~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 297 (517)
+..+..+. .++.++++++.+.+..+. .+..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+..+.
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSN-TFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISAS 322 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTT-TTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred hhHhchhhcCceeEEEeecCccCccCHH-HhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhh
Confidence 11222222 688999999998855444 35788999999999998874 455688899999999999999844454444
Q ss_pred hccCCCcEEEccCCcCCCCC-chhhhcCCCCcEEeccccccccccc-hhHHhhcCCCcEEEccCCcccccccccccCCCC
Q 042271 298 TYLPGLMDLNLSRNAFNGSI-PSSFADMKMLERVDISYNQLTGEIP-ERMAARCFSLEILALSNNSLQGHIFSEKFNLTN 375 (517)
Q Consensus 298 ~~~~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 375 (517)
. +++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+... ...+..+++|+.|++++|.+.+..+..+..+++
T Consensus 323 ~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 323 N-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp G-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred c-cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 4 899999999999887544 4458899999999999999884331 345667999999999999998888888999999
Q ss_pred CcEEEccCcccccccc-hhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccc---ccccccCCCCccEE
Q 042271 376 LMTLQLDGNKFTGEIL-ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGP---IPIEFCQLNSLKIL 451 (517)
Q Consensus 376 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L 451 (517)
|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 9999999999876544 3488899999999999999888888899999999999999999762 23568899999999
Q ss_pred EccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccC
Q 042271 452 DLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR 515 (517)
Q Consensus 452 ~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~ 515 (517)
++++|++++..+..+. +++|++|++++|.+++..+..|..+++| .|++++|.+++.+|..+++
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~ 545 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI 545 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc
Confidence 9999999888777665 8999999999999999999999999999 9999999999888776653
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-49 Score=408.30 Aligned_cols=468 Identities=20% Similarity=0.146 Sum_probs=383.6
Q ss_pred CCCCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCC
Q 042271 1 FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMT 80 (517)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 80 (517)
|+++++||+|++++| .+.+..+.. ++.+++|++|++++|.+..+++..|+++++|++|++++|.+.+..+..+.+++
T Consensus 52 ~~~l~~L~~L~Ls~n--~l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 52 FSNFSELQWLDLSRC--EIETIEDKA-WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTCTTCCEEECTTC--CCCEECTTT-TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred ccCCccCcEEeCCCC--cccccCHHH-hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 578999999999999 666555555 89999999999999999999777999999999999999999977778899999
Q ss_pred CCcEEEccCCccCC-CCCcchhccccCcEEEccccccCCcccccccCCCCCc----EEeccCCccccccCCCcccCCCCC
Q 042271 81 SLQVLYASSNELTG-NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLR----VLDVSDNQLTQNISSSPLMHLTSI 155 (517)
Q Consensus 81 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~----~L~L~~~~~~~~~~~~~l~~l~~L 155 (517)
+|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++|+ +|++++|.+.. ++...+... +|
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~~-~L 206 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGI-KL 206 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTTC-EE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce-eCcccccCc-ee
Confidence 99999999999985 5688999999999999999999987788787776665 89999999965 555345444 89
Q ss_pred ceeecccCCCCCCCCCcccccCccccccccc--------------------------------ccccccccccCCCCCcc
Q 042271 156 EELILSNNHFFQSPISLEPLFNLSKRKTFDS--------------------------------EICAETESHYNSLTPKF 203 (517)
Q Consensus 156 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l--------------------------------~~~~~~~~~~~~~~~~~ 203 (517)
++|++++|.+. .......+.+++.++.+++ ............+....
T Consensus 207 ~~L~L~~n~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~ 285 (606)
T 3vq2_A 207 HELTLRGNFNS-SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285 (606)
T ss_dssp EEEEEESCCSC-HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT
T ss_pred eeeeccCCccc-hhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCC
Confidence 99999998742 1111112222333222221 11111122222355667
Q ss_pred eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271 204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV 283 (517)
Q Consensus 204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (517)
+|+.+.+.++.... ++ .+..+++|+.+++++|.+ +.+|.. .+++|++|++++|...... .+..+++|+.|++
T Consensus 286 ~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 357 (606)
T 3vq2_A 286 NVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL 357 (606)
T ss_dssp TCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEEC
T ss_pred CCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccch--hhccCCCCCEEEC
Confidence 99999999988743 45 788899999999999999 578843 8899999999999654432 6778999999999
Q ss_pred cCCccccc--CChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCc
Q 042271 284 SNNFFRGH--IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNS 361 (517)
Q Consensus 284 ~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~ 361 (517)
++|.+++. .+..+.. +++|++|++++|.+.+ ++..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.
T Consensus 358 s~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred cCCccCCCcchhhhhcc-CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 99998743 2555555 8999999999999884 557889999999999999999866665677789999999999999
Q ss_pred ccccccccccCCCCCcEEEccCccccc-ccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccc
Q 042271 362 LQGHIFSEKFNLTNLMTLQLDGNKFTG-EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPI 440 (517)
Q Consensus 362 ~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 440 (517)
+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..|.
T Consensus 436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 998888889999999999999999986 4678899999999999999999988888999999999999999999988899
Q ss_pred cccCCCCccEEEccCCccccCCCCCCCcc-cccEEEccCCcCCcc
Q 042271 441 EFCQLNSLKILDLSNNSIFRTLPSCFSPA-SIEQLHLSKNKIEGR 484 (517)
Q Consensus 441 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~ 484 (517)
.+..+++|++|++++|+++........++ +|++|++++|.+...
T Consensus 516 ~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp GTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred HccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 99999999999999999986555533354 799999999998753
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-47 Score=385.58 Aligned_cols=487 Identities=21% Similarity=0.201 Sum_probs=357.3
Q ss_pred CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271 5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV 84 (517)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 84 (517)
+++++|++++| .+.+..+.. +..+++|++|++++|.+..++.++|+++++|++|++++|.+.+..+.+|.++++|++
T Consensus 28 ~~l~~L~Ls~n--~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFN--PLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSC--CCCEECTTT-TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCC--ccCccChhH-hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 36788888888 444443333 778888888888888787777767888888888888888887666677888888888
Q ss_pred EEccCCccCCCCCcchhccccCcEEEccccccCC-cccccccCCCCCcEEeccCCccccccCCCcccCCCCC----ceee
Q 042271 85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSI----EELI 159 (517)
Q Consensus 85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L----~~L~ 159 (517)
|++++|.+....+..++.+++|++|++++|.+++ .+|..|.++++|++|++++|.+.+ ++...+..+++| ++++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcc
Confidence 8888887775444457788888888888888775 357778888888888888887764 333366667777 6788
Q ss_pred cccCCCCCCCCCcccccCccccccccccccccc----ccccCCCCCcceeeEeecc--ccccC----CCccccccccC--
Q 042271 160 LSNNHFFQSPISLEPLFNLSKRKTFDSEICAET----ESHYNSLTPKFQLTFISLS--GYIDG----GTFPKFLYHQH-- 227 (517)
Q Consensus 160 l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~----~~~~~~~~~~~~L~~l~l~--~~~~~----~~~~~~~~~~~-- 227 (517)
+++|.+...... .+... .|+.+++...... ......+ .+++...+. ..... ......+..+.
T Consensus 184 l~~n~l~~~~~~--~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l---~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l 257 (570)
T 2z63_A 184 LSLNPMNFIQPG--AFKEI-RLHKLTLRNNFDSLNVMKTCIQGL---AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257 (570)
T ss_dssp CTTCCCCEECTT--TTTTC-EEEEEEEESCCSCTTHHHHHHHTT---TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred cCCCCceecCHH--HhccC-cceeEecccccccccchhhhhcCc---cccceeeeccccccCchhhhhcchhhhcccccc
Confidence 887765332221 12121 3444444332100 0001111 111111111 00000 00001111121
Q ss_pred CcCEeeccCC-cCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEE
Q 042271 228 DLKNADLSHL-NLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDL 306 (517)
Q Consensus 228 ~L~~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 306 (517)
.++.+.+..+ .+.+..+..+ ..+++|+.|+++++.+.. .+..+..+ +|++|++++|.+. .+|.. .+++|+.|
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L 330 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRL 330 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTT-GGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEE
T ss_pred chhhhhhhcchhhhhhchhhh-cCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCcc---cccccCEE
Confidence 2445555555 4555555553 678999999999998864 44556666 9999999999987 66663 37899999
Q ss_pred EccCCcCCCCCchhhhcCCCCcEEeccccccccccc-hhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcc
Q 042271 307 NLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIP-ERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNK 385 (517)
Q Consensus 307 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 385 (517)
++++|.+.+..+. ..+++|++|++++|.+.+... ...+..+++|+.|++++|.+.+.... +..+++|++|++++|.
T Consensus 331 ~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 331 TFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred eCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence 9999988755543 788999999999999874321 34556799999999999998876554 8899999999999999
Q ss_pred cccccc-hhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccc-ccccccccCCCCccEEEccCCccccCCC
Q 042271 386 FTGEIL-ESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE-GPIPIEFCQLNSLKILDLSNNSIFRTLP 463 (517)
Q Consensus 386 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 463 (517)
+....+ ..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+. +.+|..+..+++|++|++++|++++..+
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 976544 56889999999999999998888889999999999999999997 4678899999999999999999988877
Q ss_pred CCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCc
Q 042271 464 SCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN 511 (517)
Q Consensus 464 ~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~ 511 (517)
..+. +++|++|++++|.+++.++..|..+++|++|++++|+++|.+|.
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 6665 89999999999999999999999999999999999999999985
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-47 Score=406.04 Aligned_cols=485 Identities=20% Similarity=0.188 Sum_probs=357.6
Q ss_pred CCcCceeeCCCccccccccchhhccCCCCcceEEecccc-ccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCC
Q 042271 4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINS-SKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSL 82 (517)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 82 (517)
.+++|+|++++| .+.+..+.. +..+++|++|+++++ .+..+++.+|+++++|++|++++|.+.+..|..|.++++|
T Consensus 23 p~~l~~LdLs~N--~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 23 LNTTERLLLSFN--YIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp CTTCCEEEEESC--CCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCcCEEECCCC--cCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 368999999999 555555555 899999999999977 5667767789999999999999999988889999999999
Q ss_pred cEEEccCCccCCCCCcc--hhccccCcEEEccccccCCccc-ccccCCCCCcEEeccCCccccccCCCcccCC--CCCce
Q 042271 83 QVLYASSNELTGNISPG--LCELVLMRELHIDNNDLRGSLP-LCLANLTSLRVLDVSDNQLTQNISSSPLMHL--TSIEE 157 (517)
Q Consensus 83 ~~L~l~~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l--~~L~~ 157 (517)
++|++++|.+.+..+.. ++.+++|++|++++|.+++..+ ..|.++++|++|++++|.+.+..+ ..+..+ ++|+.
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~-~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE-HELEPLQGKTLSF 178 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS-GGGHHHHHCSSCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH-HHcccccCCccce
Confidence 99999999998766654 8899999999999999886654 578999999999999998865333 366666 78888
Q ss_pred eecccCCCCCCCCCcccccCcc------ccccccccccccc---ccccC-------------------------------
Q 042271 158 LILSNNHFFQSPISLEPLFNLS------KRKTFDSEICAET---ESHYN------------------------------- 197 (517)
Q Consensus 158 L~l~~~~~~~~~~~~~~l~~l~------~L~~l~l~~~~~~---~~~~~------------------------------- 197 (517)
|+++.|.+..... ..+..+. .|+.+++...... ...+.
T Consensus 179 L~L~~n~l~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 179 FSLAANSLYSRVS--VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CEECCSBSCCCCC--CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred EECCCCccccccc--cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 8888887433211 1122222 2666666553111 00000
Q ss_pred --CCC--CcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccc
Q 042271 198 --SLT--PKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIH 273 (517)
Q Consensus 198 --~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (517)
.+. ...+++.++++++.+....+..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+.
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCHHHhc
Confidence 011 1246777777777666666666777777777777777776554444 35667777777777777666666677
Q ss_pred cCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCc
Q 042271 274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE 353 (517)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 353 (517)
.+++|+.|++++|.+. .++...+..+++|+.|++++|.+++. ..+++|+.+++++|.+. .+|.. ..+++
T Consensus 336 ~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~----~~~l~ 404 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI----NLTAN 404 (844)
T ss_dssp SCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC----CTTCC
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc----ccccc
Confidence 7777777777777775 44433334467777777777776632 22667777777777776 44432 45678
Q ss_pred EEEccCCccccccc-ccccCCCCCcEEEccCcccccccch-hhhhcccCCeEEecCCCCC-----CccchhhcCCCCCcE
Q 042271 354 ILALSNNSLQGHIF-SEKFNLTNLMTLQLDGNKFTGEILE-SLSKCYLLEGLYLSDNHLT-----GEIPRWLGNLSALED 426 (517)
Q Consensus 354 ~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~ 426 (517)
.+++++|.+.+... ..+..+++|+.|++++|.+.+.... .+..+++|+.|++++|.+. +..+..+.++++|+.
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence 88888887775422 2345789999999999998743322 3456789999999999886 334566888999999
Q ss_pred EECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271 427 IIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506 (517)
Q Consensus 427 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~ 506 (517)
|++++|.+.+..+..|.++++|+.|++++|++++..+..+. ++|+.|++++|.+++..+..|. +|+.+++++|++.
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFI 560 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCC
T ss_pred EECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcc
Confidence 99999999988888899999999999999999887776665 8999999999999988887654 8899999999998
Q ss_pred CCCC
Q 042271 507 GSIP 510 (517)
Q Consensus 507 ~~~~ 510 (517)
|.++
T Consensus 561 C~c~ 564 (844)
T 3j0a_A 561 CECE 564 (844)
T ss_dssp CSSS
T ss_pred cccc
Confidence 8775
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-46 Score=391.86 Aligned_cols=480 Identities=20% Similarity=0.148 Sum_probs=324.2
Q ss_pred CCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCc-cccccCCCCCcEEEccCCccCCCCCcchhccccCcE
Q 042271 30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSL-PWCLANMTSLQVLYASSNELTGNISPGLCELVLMRE 108 (517)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 108 (517)
..+++++|++++|.+..+....|.++++|++|++++|.....+ |.+|.++++|++|++++|.+.+..|..++.+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 5578999999999999998889999999999999999654344 889999999999999999999888999999999999
Q ss_pred EEccccccCCccccc--ccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCc--cccccc
Q 042271 109 LHIDNNDLRGSLPLC--LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL--SKRKTF 184 (517)
Q Consensus 109 L~L~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l--~~L~~l 184 (517)
|++++|.+++..|.. +.++++|++|++++|.+.+..+...+..+++|++|++++|.+... ....+..+ ++|+.+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~--~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV--CEHELEPLQGKTLSFF 179 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC--CSGGGHHHHHCSSCCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee--CHHHcccccCCccceE
Confidence 999999998766654 999999999999999997644444789999999999999985332 22344444 678888
Q ss_pred ccccccccccccCCCCCc------ceeeEeeccccccCCCcccccccc---CCcCEeeccCCcC---------CCCCChh
Q 042271 185 DSEICAETESHYNSLTPK------FQLTFISLSGYIDGGTFPKFLYHQ---HDLKNADLSHLNL---------SGKFPNW 246 (517)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~------~~L~~l~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~---------~~~~~~~ 246 (517)
++............+... ..|+.+++++|......+..+... ..++.+.+..+.. .+.....
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 877754433222222222 248999999987666555444322 2333443331111 0000000
Q ss_pred hhhc--ccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcC
Q 042271 247 LVEN--NANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 324 (517)
Q Consensus 247 ~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l 324 (517)
+.. .++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+
T Consensus 260 -f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 260 -FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp -TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred -hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCC
Confidence 011 13455555555544444444444455555555555554422222222 24455555555555544444445555
Q ss_pred CCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccccc---------------ccccCCCCCcEEEccCcccccc
Q 042271 325 KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF---------------SEKFNLTNLMTLQLDGNKFTGE 389 (517)
Q Consensus 325 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---------------~~~~~~~~L~~L~l~~~~~~~~ 389 (517)
++|+.|++++|.+. .++...+..+++|+.|++++|.++.... ..-....+++.|++++|.+...
T Consensus 338 ~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 338 PKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp TTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 55555555555444 3333333444555555555554432110 0001134566666666666532
Q ss_pred c-chhhhhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCccc-----ccccccccCCCCccEEEccCCccccCC
Q 042271 390 I-LESLSKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLE-----GPIPIEFCQLNSLKILDLSNNSIFRTL 462 (517)
Q Consensus 390 ~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~ 462 (517)
. ...+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+. +..+..|.++++|+.|+|++|++++..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 496 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence 2 2234578999999999999885433 24566899999999999986 334466888999999999999999888
Q ss_pred CCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccCC
Q 042271 463 PSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516 (517)
Q Consensus 463 ~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~ 516 (517)
+..+. +++|++|++++|.+++.++..+. ++|+.|++++|.+++.+|..+.+|
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L 549 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSL 549 (844)
T ss_dssp TTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSC
T ss_pred hhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCc
Confidence 88765 89999999999999988877776 899999999999999999888765
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5e-45 Score=371.65 Aligned_cols=468 Identities=18% Similarity=0.183 Sum_probs=379.5
Q ss_pred CCCCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCC
Q 042271 1 FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMT 80 (517)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 80 (517)
|+.+++||+|++++| .+.+..+.. ++++++|++|+++++.+..+++..|+++++|++|++++|.+....+..+.+++
T Consensus 48 ~~~l~~L~~L~Ls~n--~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 48 FFSFPELQVLDLSRC--EIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTCSSCCEEECTTC--CCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hhCCCCceEEECCCC--cCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 578999999999999 555544444 89999999999999999999888999999999999999999866666799999
Q ss_pred CCcEEEccCCccCC-CCCcchhccccCcEEEccccccCCcccccccCCCCC----cEEeccCCccccccCCCcccCCCCC
Q 042271 81 SLQVLYASSNELTG-NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL----RVLDVSDNQLTQNISSSPLMHLTSI 155 (517)
Q Consensus 81 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L----~~L~L~~~~~~~~~~~~~l~~l~~L 155 (517)
+|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++| ++|++++|.+.. +++..+... +|
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-~~~~~~~~~-~L 202 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RL 202 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTC-EE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee-cCHHHhccC-cc
Confidence 99999999999986 468899999999999999999998778889888888 899999999975 444356555 89
Q ss_pred ceeecccCCCCCCCCCcccccCccccccccccccc---------ccccccCCCCCcceeeEeecccc-ccCCCccccccc
Q 042271 156 EELILSNNHFFQSPISLEPLFNLSKRKTFDSEICA---------ETESHYNSLTPKFQLTFISLSGY-IDGGTFPKFLYH 225 (517)
Q Consensus 156 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~---------~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~ 225 (517)
++|++++|.. ........+..++.++...+.... .....+... ....++.+.+..+ ...+..+..+..
T Consensus 203 ~~L~l~~n~~-~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l-~~l~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 203 HKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL-CNLTIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp EEEEEESCCS-CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG-GGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred eeEecccccc-cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc-cccchhhhhhhcchhhhhhchhhhcC
Confidence 9999998752 221111233344444433332211 001111111 1125677777766 566677888899
Q ss_pred cCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcE
Q 042271 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMD 305 (517)
Q Consensus 226 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 305 (517)
+++|+.++++++.+. .+|.++ ..+ +|++|++++|.+.... ...+++|+.|++++|.+.+..+. ..+++|++
T Consensus 281 l~~L~~L~l~~~~l~-~l~~~~-~~~-~L~~L~l~~n~~~~l~---~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~ 351 (570)
T 2z63_A 281 LTNVSSFSLVSVTIE-RVKDFS-YNF-GWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEF 351 (570)
T ss_dssp GTTCSEEEEESCEEC-SCCBCC-SCC-CCSEEEEESCBCSSCC---BCBCSSCCEEEEESCBSCCBCCC---CBCTTCCE
T ss_pred cCcccEEEecCccch-hhhhhh-ccC-CccEEeeccCcccccC---cccccccCEEeCcCCcccccccc---ccCCCCCE
Confidence 999999999999888 566665 455 9999999999887432 25788999999999988755544 34899999
Q ss_pred EEccCCcCCCCC--chhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccccc-ccccCCCCCcEEEcc
Q 042271 306 LNLSRNAFNGSI--PSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF-SEKFNLTNLMTLQLD 382 (517)
Q Consensus 306 L~l~~~~i~~~~--~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~ 382 (517)
|++++|.+++.. +..+..+++|++|++++|.+. .++.. +..+++|+.|++++|.+.+..+ ..+..+++|++|+++
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 999999988543 678899999999999999988 45544 6679999999999999987654 567899999999999
Q ss_pred CcccccccchhhhhcccCCeEEecCCCCC-CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccC
Q 042271 383 GNKFTGEILESLSKCYLLEGLYLSDNHLT-GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT 461 (517)
Q Consensus 383 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 461 (517)
+|.+....+..+.++++|++|++++|.+. +.+|..+..+++|+.|++++|++.+..|..|..+++|++|++++|++++.
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 99998888888999999999999999987 46888999999999999999999988889999999999999999999888
Q ss_pred CCCCCC-cccccEEEccCCcCCccch
Q 042271 462 LPSCFS-PASIEQLHLSKNKIEGRLE 486 (517)
Q Consensus 462 ~~~~~~-~~~L~~L~l~~n~~~~~~~ 486 (517)
.+..+. +++|++|++++|.+++..+
T Consensus 510 ~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 510 PDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHHHhhcccCCcEEEecCCcccCCCc
Confidence 777665 8999999999999986543
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-44 Score=367.39 Aligned_cols=488 Identities=19% Similarity=0.147 Sum_probs=376.7
Q ss_pred CCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCc
Q 042271 4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQ 83 (517)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 83 (517)
|+...+.+.+++ .++ .+|.. -.+.|++|+++++.+..+++..|+++++|++|++++|++.+..+.+|.++++|+
T Consensus 4 C~~~~~c~~~~~--~l~-~ip~~---~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 4 CDASGVCDGRSR--SFT-SIPSG---LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp ECTTSEEECTTS--CCS-SCCSC---CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCceEECCCC--ccc-ccccc---CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence 455556677776 332 34433 237899999999999988877899999999999999999988889999999999
Q ss_pred EEEccCCccCCCCCcchhccccCcEEEccccccCC-cccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeeccc
Q 042271 84 VLYASSNELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN 162 (517)
Q Consensus 84 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~ 162 (517)
+|++++|.+.+..+..++.+++|++|++++|.+++ ..|..+.++++|++|++++|...+.++...+..+++|++|++++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 99999999997666669999999999999999986 35678999999999999999855567766799999999999999
Q ss_pred CCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCc---cccccccCCcCEeeccCCcC
Q 042271 163 NHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTF---PKFLYHQHDLKNADLSHLNL 239 (517)
Q Consensus 163 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~ 239 (517)
|.+... ....+..++.|+.+++.................+|+++++++|.+.+.. ......++.|+.++++++.+
T Consensus 158 n~l~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 158 LSLRNY--QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp TTCCEE--CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred Cccccc--ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence 985332 2245666777777777664321111111112457888888888766531 12234567888888888877
Q ss_pred CCCCChhh---hhcccccceEeccCCccCCCc------ccccccCCcccEEEccCCccccc-----CChhhhhccCCCcE
Q 042271 240 SGKFPNWL---VENNANLERLLLADNSLFGSF------WMPIHSHQKLATLDVSNNFFRGH-----IPVEIGTYLPGLMD 305 (517)
Q Consensus 240 ~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~ 305 (517)
.+..+..+ ...+++++.+++++|.+.+.. ...+..+++++.+++.++.+... ++ ......++|++
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~-~~~~~~~~L~~ 314 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKR 314 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC-HHHHHSTTCCE
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch-hhhhhcccceE
Confidence 65444333 245678889999888764421 22346678889999988766421 11 12233678999
Q ss_pred EEccCCcCCCCCchhh-hcCCCCcEEeccccccccccchh--HHhhcCCCcEEEccCCccccccc--ccccCCCCCcEEE
Q 042271 306 LNLSRNAFNGSIPSSF-ADMKMLERVDISYNQLTGEIPER--MAARCFSLEILALSNNSLQGHIF--SEKFNLTNLMTLQ 380 (517)
Q Consensus 306 L~l~~~~i~~~~~~~~-~~l~~L~~L~l~~~~i~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~ 380 (517)
|++++|.+. .+|..+ ..+++|++|++++|.+.+.++.. .+..+++|+.|++++|.+++... ..+..+++|++|+
T Consensus 315 L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred EEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 999999987 455554 68999999999999998665532 24568899999999999976532 4577899999999
Q ss_pred ccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccc
Q 042271 381 LDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR 460 (517)
Q Consensus 381 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 460 (517)
+++|.+. ..+..+..+++|++|++++|.+. .++..+ .++|++|++++|++.+. +..+++|++|++++|+++.
T Consensus 394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ 465 (549)
T 2z81_A 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKT 465 (549)
T ss_dssp CTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSS
T ss_pred CCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccCc
Confidence 9999998 56777888899999999999987 444333 26899999999999863 2578999999999999974
Q ss_pred CCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 461 TLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 461 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
.+....+++|++|++++|.+++.++..|..+++|+.|++++|+++|.+|
T Consensus 466 -ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 466 -LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -CCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -CCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 4444458999999999999999999999999999999999999999887
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=363.72 Aligned_cols=458 Identities=18% Similarity=0.178 Sum_probs=343.1
Q ss_pred ceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEc
Q 042271 8 EHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYA 87 (517)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 87 (517)
++|+++++ .+. .+|.. +. ++|++|++++|.+..++...|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus 3 ~~l~ls~n--~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKN--GLI-HVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTS--CCS-SCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCC--Ccc-ccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 68999999 554 45544 33 89999999999999998889999999999999999999888999999999999999
Q ss_pred cCCccCCCCCcchhccccCcEEEccccccCC-cccccccCCCCCcEEeccCCccccccCCCcccCCCCC--ceeecccCC
Q 042271 88 SSNELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSI--EELILSNNH 164 (517)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~ 164 (517)
++|.++ .+|.. .+++|++|++++|.+++ .+|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.
T Consensus 77 s~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 77 SHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECT
T ss_pred CCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccc
Confidence 999998 56655 89999999999999986 478899999999999999999865 257778888 999999997
Q ss_pred CCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCcc-ccccccCCcCEeeccCCc-----
Q 042271 165 FFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFP-KFLYHQHDLKNADLSHLN----- 238 (517)
Q Consensus 165 ~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~----- 238 (517)
+.........+..+.. +...+.+.++...+..+ ..+..+++|+.+++++|.
T Consensus 150 l~~~~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 206 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206 (520)
T ss_dssp TTTSSCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT
T ss_pred cccccccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc
Confidence 5211111122222211 12233444444333222 234456666777666654
Q ss_pred --CCCCCChhhhhcccccceEeccCCccCCCccccc---ccCCcccEEEccCCcccccCChhhh----hccCCCcEEEcc
Q 042271 239 --LSGKFPNWLVENNANLERLLLADNSLFGSFWMPI---HSHQKLATLDVSNNFFRGHIPVEIG----TYLPGLMDLNLS 309 (517)
Q Consensus 239 --~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~ 309 (517)
+.+.++ . +..+++|+.|+++++.+.+.....+ ...++|+.|++++|.+.+.+|..++ ..+++|+.++++
T Consensus 207 ~~~~~~~~-~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~ 284 (520)
T 2z7x_B 207 SYFLSILA-K-LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284 (520)
T ss_dssp HHHHHHHH-G-GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEE
T ss_pred ceeecchh-h-hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccc
Confidence 333332 1 3456777777777766543221111 1235788888888888767776662 237788888888
Q ss_pred CCcCCCCCc-hhhhcC---CCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcc
Q 042271 310 RNAFNGSIP-SSFADM---KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNK 385 (517)
Q Consensus 310 ~~~i~~~~~-~~~~~l---~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 385 (517)
+|.+ .+| ..+..+ .+|+.|++++|.+.. .+ ....+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 285 ~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 359 (520)
T 2z7x_B 285 SDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359 (520)
T ss_dssp ECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC
T ss_pred ccce--ecchhhhhcccccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc
Confidence 8877 233 444444 678888888888763 22 11457889999999998888777788889999999999999
Q ss_pred ccc--ccchhhhhcccCCeEEecCCCCCCccch-hhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCC
Q 042271 386 FTG--EILESLSKCYLLEGLYLSDNHLTGEIPR-WLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL 462 (517)
Q Consensus 386 ~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 462 (517)
+.+ ..+..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..+..+. ++|+.|++++|+++...
T Consensus 360 l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip 437 (520)
T 2z7x_B 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP 437 (520)
T ss_dssp CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC
T ss_pred cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc
Confidence 875 3446688899999999999999864554 478889999999999999876666553 79999999999997554
Q ss_pred CCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 463 PSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 463 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
.....+++|++|++++|.++..++..|..+++|++|++++|+++|.++
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 445568999999999999997666679999999999999999998775
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.4e-44 Score=363.85 Aligned_cols=441 Identities=17% Similarity=0.166 Sum_probs=318.0
Q ss_pred cCceeeCCCccccccccchhhccCCCCcceEEecccccc-------C------CcchhhhhhcccCcEEEecCCcccCCc
Q 042271 6 NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSK-------N------TILDQGLRQLVHLQELYIGGYDLRGSL 72 (517)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~------~~~~~~l~~l~~L~~L~l~~~~~~~~~ 72 (517)
+++.|+++++ .+.+.++.. +++++.|++|++++|.. + .++... +..|| ++++++.+.+..
T Consensus 82 ~V~~L~L~~~--~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~ 154 (636)
T 4eco_A 82 RVTGLSLEGF--GASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDP 154 (636)
T ss_dssp CEEEEECTTS--CCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCG
T ss_pred CEEEEEecCc--ccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCc
Confidence 5677777777 666777765 77778888888876643 1 222211 33444 455444444333
Q ss_pred cccccC-------------------CCCCcEEEcc--CCccCCCCCcchhccccCcEEEccccccCCc------------
Q 042271 73 PWCLAN-------------------MTSLQVLYAS--SNELTGNISPGLCELVLMRELHIDNNDLRGS------------ 119 (517)
Q Consensus 73 ~~~l~~-------------------l~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~------------ 119 (517)
+..+.. ...++.+.+. .|.+++ +|..++++++|++|++++|.+++.
T Consensus 155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE 233 (636)
T ss_dssp GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccc
Confidence 333321 1122222222 456665 677777888888888888887764
Q ss_pred -----cccccc--CCCCCcEEeccCCccccccCCCcccCCCCCceeecccCC-CCCCCCCcccccCcccccccccccccc
Q 042271 120 -----LPLCLA--NLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH-FFQSPISLEPLFNLSKRKTFDSEICAE 191 (517)
Q Consensus 120 -----~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~L~~l~l~~~~~ 191 (517)
+|..+. ++++|++|++++|.+.+.+|. .+..+++|++|++++|. +...... ..+..+.
T Consensus 234 ~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~L~------------ 299 (636)
T 4eco_A 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLK-DDWQALA------------ 299 (636)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHH-HHHHHHH------------
T ss_pred hhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccch-HHHHhhh------------
Confidence 777777 788888888888877666664 67778888888888775 3110000 0011110
Q ss_pred cccccCCCCCcceeeEeeccccccCCCccc--cccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcc
Q 042271 192 TESHYNSLTPKFQLTFISLSGYIDGGTFPK--FLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW 269 (517)
Q Consensus 192 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 269 (517)
......+|+++++++|.+. .+|. .+..+++|+.|++++|.+.+.+| . +..+++|++|++++|.+. ..+
T Consensus 300 ------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp 369 (636)
T 4eco_A 300 ------DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIP 369 (636)
T ss_dssp ------HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECC
T ss_pred ------ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-ccc
Confidence 0111236777777777776 6777 78889999999999999988888 3 478899999999999887 455
Q ss_pred cccccCCc-ccEEEccCCcccccCChhhhh-ccCCCcEEEccCCcCCCCCchhhh-------cCCCCcEEeccccccccc
Q 042271 270 MPIHSHQK-LATLDVSNNFFRGHIPVEIGT-YLPGLMDLNLSRNAFNGSIPSSFA-------DMKMLERVDISYNQLTGE 340 (517)
Q Consensus 270 ~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~-------~l~~L~~L~l~~~~i~~~ 340 (517)
..+..+++ |+.|++++|.++ .+|..+.. .+++|++|++++|.+.+..|..+. .+++|++|++++|.+. .
T Consensus 370 ~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~ 447 (636)
T 4eco_A 370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-K 447 (636)
T ss_dssp TTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-S
T ss_pred HhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-c
Confidence 66888888 999999999988 77765543 134899999999999888887777 7789999999999998 8
Q ss_pred cchhHHhhcCCCcEEEccCCcccccccccccCC-------CCCcEEEccCcccccccchhhh--hcccCCeEEecCCCCC
Q 042271 341 IPERMAARCFSLEILALSNNSLQGHIFSEKFNL-------TNLMTLQLDGNKFTGEILESLS--KCYLLEGLYLSDNHLT 411 (517)
Q Consensus 341 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~ 411 (517)
+|...+..+++|+.|++++|.++......+... ++|++|++++|.+. ..+..+. .+++|+.|++++|++.
T Consensus 448 lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC
Confidence 888888889999999999999885443333333 38999999999998 5666665 8899999999999998
Q ss_pred CccchhhcCCCCCcEEEC------CCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCcc
Q 042271 412 GEIPRWLGNLSALEDIIM------PNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR 484 (517)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 484 (517)
+ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|++|++++|++ +..+..+. ++|++|++++|++...
T Consensus 527 ~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISI 602 (636)
T ss_dssp S-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEE
T ss_pred C-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCccc
Confidence 5 7888889999999999 45777778888899999999999999999 44455443 8999999999977644
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=350.04 Aligned_cols=440 Identities=17% Similarity=0.177 Sum_probs=355.1
Q ss_pred eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEcccc
Q 042271 35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN 114 (517)
Q Consensus 35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 114 (517)
++|+++++.+..+|. .+. ++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..++.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcccccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 579999999999886 333 89999999999999788889999999999999999999777888999999999999999
Q ss_pred ccCCcccccccCCCCCcEEeccCCcccc-ccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccc
Q 042271 115 DLRGSLPLCLANLTSLRVLDVSDNQLTQ-NISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETE 193 (517)
Q Consensus 115 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 193 (517)
.++ .+|.. .+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+.. ..+..++.|
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L------------ 138 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHL------------ 138 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCC-GGGGGCTTCCEEEEEESSCCG-----GGGGGGTTS------------
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccch-hhhccCCcceEEEecCcccch-----hhccccccc------------
Confidence 998 56665 89999999999999975 233 378999999999999998522 122222211
Q ss_pred cccCCCCCcceeeEeecccccc--CCCccccccccC-CcCEeeccCCcCCCCCChhhhhcccccceEeccCCc-------
Q 042271 194 SHYNSLTPKFQLTFISLSGYID--GGTFPKFLYHQH-DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNS------- 263 (517)
Q Consensus 194 ~~~~~~~~~~~L~~l~l~~~~~--~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------- 263 (517)
+|+.+.+.+|.+ .+..|..+..+. ....+++.++.+.+.++...+..+++|+.+++++|.
T Consensus 139 ----------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 139 ----------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp ----------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred ----------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 447888888877 666676666554 334567788888877777767788999999999886
Q ss_pred cCCCcccccccCCcccEEEccCCcccccCChhhhh--ccCCCcEEEccCCcCCCCCchhh-----hcCCCCcEEeccccc
Q 042271 264 LFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGT--YLPGLMDLNLSRNAFNGSIPSSF-----ADMKMLERVDISYNQ 336 (517)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~-----~~l~~L~~L~l~~~~ 336 (517)
+.+.. ..+..+++|+.|+++++.+.+..+..... ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.
T Consensus 209 ~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 209 FLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred eecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence 33333 36788899999999999876543333221 25699999999999998888887 899999999999998
Q ss_pred cccccchhHHhhc---CCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCC-
Q 042271 337 LTGEIPERMAARC---FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG- 412 (517)
Q Consensus 337 i~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 412 (517)
+ .+|...+..+ ++|+.|++++|.+..... +..+++|++|++++|.+.+..+..+..+++|++|++++|++.+
T Consensus 288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363 (520)
T ss_dssp C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred e--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence 8 5663333333 679999999998875331 2688999999999999998788889999999999999999986
Q ss_pred -ccchhhcCCCCCcEEECCCCcccccccc-cccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhc
Q 042271 413 -EIPRWLGNLSALEDIIMPNNNLEGPIPI-EFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIH 490 (517)
Q Consensus 413 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 490 (517)
.+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..+..+ .++|++|++++|.++.. |..+.
T Consensus 364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~L~~L~Ls~N~l~~i-p~~~~ 441 (520)
T 2z7x_B 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSI-PKQVV 441 (520)
T ss_dssp HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC-CTTCCEEECCSSCCCCC-CGGGG
T ss_pred ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh-cccCCEEECCCCccccc-chhhh
Confidence 4567899999999999999999974554 58889999999999999977666554 38999999999999954 44455
Q ss_pred CCCcccEEECCCCcCCCCCCcc-ccCC
Q 042271 491 DSPHLVTLDLSCNSLHGSIPNQ-IGRL 516 (517)
Q Consensus 491 ~~~~L~~l~l~~n~~~~~~~~~-~~~~ 516 (517)
.+++|++|++++|+++ .+|.. |+++
T Consensus 442 ~l~~L~~L~L~~N~l~-~l~~~~~~~l 467 (520)
T 2z7x_B 442 KLEALQELNVASNQLK-SVPDGIFDRL 467 (520)
T ss_dssp GCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred cCCCCCEEECCCCcCC-ccCHHHhccC
Confidence 8999999999999999 56665 6654
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-41 Score=344.47 Aligned_cols=473 Identities=17% Similarity=0.154 Sum_probs=356.1
Q ss_pred CCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEE
Q 042271 31 KPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELH 110 (517)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 110 (517)
|+...+.+++++.+..+|.. + .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..++.+++|++|+
T Consensus 4 C~~~~~c~~~~~~l~~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCceEECCCCcccccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 44445567788888888873 3 37999999999999988889999999999999999999977778899999999999
Q ss_pred ccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCccccccccccccc
Q 042271 111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICA 190 (517)
Q Consensus 111 L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 190 (517)
+++|.+++..+.+|.++++|++|++++|.+.+...+..+..+++|++|++++|.. ........+.++++|+.+++....
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET-FSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS-CCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc-ccccCHhhhhcccccCeeeccCCc
Confidence 9999999888888999999999999999997522223789999999999999972 233333456677777777777655
Q ss_pred ccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCC--ChhhhhcccccceEeccCCccCCCc
Q 042271 191 ETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKF--PNWLVENNANLERLLLADNSLFGSF 268 (517)
Q Consensus 191 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~ 268 (517)
........+....+|+.+++..+.........+..+++|+.+++++|.+.+.. +..+...+++++.|+++++.+.+..
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 44444445555567777777766554322222345677777777777766531 2222344567777777777654322
Q ss_pred c----cccccCCcccEEEccCCcccccCC-----hhhhhccCCCcEEEccCCcCCCC-----CchhhhcCCCCcEEeccc
Q 042271 269 W----MPIHSHQKLATLDVSNNFFRGHIP-----VEIGTYLPGLMDLNLSRNAFNGS-----IPSSFADMKMLERVDISY 334 (517)
Q Consensus 269 ~----~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~i~~~-----~~~~~~~l~~L~~L~l~~ 334 (517)
. ..+..+++|+.+++++|.+.+... ......+++++.+++.++.+... .+..+...++|++|++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 2 223456677777777776653110 01112356777888777765421 223345567899999999
Q ss_pred cccccccchhHHhhcCCCcEEEccCCccccccc---ccccCCCCCcEEEccCcccccccc--hhhhhcccCCeEEecCCC
Q 042271 335 NQLTGEIPERMAARCFSLEILALSNNSLQGHIF---SEKFNLTNLMTLQLDGNKFTGEIL--ESLSKCYLLEGLYLSDNH 409 (517)
Q Consensus 335 ~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~ 409 (517)
|.+. .+|..++..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++... ..+..+++|++|++++|+
T Consensus 320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 9987 8888888889999999999999987543 346789999999999999975432 458889999999999999
Q ss_pred CCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhh
Q 042271 410 LTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESII 489 (517)
Q Consensus 410 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 489 (517)
+. .+|..+..+++|++|++++|.+.. ++..+ .++|++|++++|++++.. ..+++|++|++++|.++.+++ .
T Consensus 399 l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~--~ 469 (549)
T 2z81_A 399 FH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD--A 469 (549)
T ss_dssp CC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC--G
T ss_pred Cc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC--c
Confidence 98 678888999999999999999974 44333 269999999999997753 247999999999999995544 4
Q ss_pred cCCCcccEEECCCCcCCCCCCccccCCC
Q 042271 490 HDSPHLVTLDLSCNSLHGSIPNQIGRLP 517 (517)
Q Consensus 490 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 517 (517)
..+++|+.|++++|++++.+|..+++++
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLT 497 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCc
Confidence 5689999999999999988888777653
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-42 Score=357.97 Aligned_cols=386 Identities=18% Similarity=0.154 Sum_probs=284.6
Q ss_pred CccCCCCCcchhccccCcEEEccccccCC-----------------ccccccc--CCCCCcEEeccCCccccccCCCccc
Q 042271 90 NELTGNISPGLCELVLMRELHIDNNDLRG-----------------SLPLCLA--NLTSLRVLDVSDNQLTQNISSSPLM 150 (517)
Q Consensus 90 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-----------------~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~l~ 150 (517)
|.+++ +|..++++++|++|+|++|.+++ .+|..+. ++++|++|++++|.+.+.+|. .+.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHh
Confidence 45554 66667777777777777777765 2666665 777777777777766655554 667
Q ss_pred CCCCCceeecccCC-CCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccc--cccccC
Q 042271 151 HLTSIEELILSNNH-FFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPK--FLYHQH 227 (517)
Q Consensus 151 ~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~ 227 (517)
.+++|++|++++|. +.....+ ..+..++ ..+...++|+.|++++|.+. .+|. .+..++
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP-~~i~~L~-----------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLK-ADWTRLA-----------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHH-HHHHHHH-----------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred CCCCCCEEECcCCCCcccccch-HHHHhhh-----------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 77777777777765 2100000 0010000 01122336677777777666 6777 788888
Q ss_pred CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCc-ccEEEccCCcccccCChhhhh-ccCCCcE
Q 042271 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQK-LATLDVSNNFFRGHIPVEIGT-YLPGLMD 305 (517)
Q Consensus 228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~-~~~~L~~ 305 (517)
+|+.|++++|.+. .+| .+..+++|+.|++++|.+. .++..+..+++ |+.|++++|.++ .+|..+.. ..++|+.
T Consensus 574 ~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648 (876)
T ss_dssp TCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred CCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence 9999999999888 777 3477889999999999887 55566888888 999999999987 77765443 1234999
Q ss_pred EEccCCcCCCCCch---hhh--cCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccccccccc-------CC
Q 042271 306 LNLSRNAFNGSIPS---SFA--DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-------NL 373 (517)
Q Consensus 306 L~l~~~~i~~~~~~---~~~--~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-------~~ 373 (517)
|++++|.+.+.++. .+. .+++|+.|++++|.+. .+|..++..+++|+.|++++|.+.......+. ++
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTG
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccccc
Confidence 99999998865442 222 3458999999999998 88888888899999999999988844333333 23
Q ss_pred CCCcEEEccCcccccccchhhh--hcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC------CcccccccccccCC
Q 042271 374 TNLMTLQLDGNKFTGEILESLS--KCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN------NNLEGPIPIEFCQL 445 (517)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~ 445 (517)
++|+.|++++|.+. ..+..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+.+|..+..+
T Consensus 728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 48999999999998 5667776 89999999999999985 788888999999999976 77777889999999
Q ss_pred CCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271 446 NSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506 (517)
Q Consensus 446 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~ 506 (517)
++|++|+|++|++ +..|..+ .++|+.|++++|++....+..+.....+..+.|.+|+..
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 9999999999999 5555544 379999999999998777666766666677777777665
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-42 Score=351.18 Aligned_cols=357 Identities=21% Similarity=0.272 Sum_probs=292.3
Q ss_pred ccccCCcccccccCCCCCcEEeccCCccccc-----------------cCCCccc--CCCCCceeecccCCCCCCCCCcc
Q 042271 113 NNDLRGSLPLCLANLTSLRVLDVSDNQLTQN-----------------ISSSPLM--HLTSIEELILSNNHFFQSPISLE 173 (517)
Q Consensus 113 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~ 173 (517)
.|.+++ +|.+++++++|++|++++|.+.+. +|. .+. .+++|++|++++|.+. +... .
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~-~~~p-~ 267 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNL-TKLP-T 267 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTC-SSCC-T
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCC-ccCh-H
Confidence 567887 899999999999999999999764 666 777 9999999999999742 2111 2
Q ss_pred cccCcccccccccccccccccccCCCCCcceeeEeeccccc-cCC-Ccccccccc------CCcCEeeccCCcCCCCCCh
Q 042271 174 PLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYI-DGG-TFPKFLYHQ------HDLKNADLSHLNLSGKFPN 245 (517)
Q Consensus 174 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~~~~~~~~~~ 245 (517)
.+. ...+|+.|++++|. +.+ .+|..+..+ ++|+.|++++|.+. .+|.
T Consensus 268 ~l~------------------------~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 268 FLK------------------------ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp TTT------------------------TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred HHh------------------------cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 222 33377888888887 776 788887776 99999999999999 7777
Q ss_pred -hhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCC-CcEEEccCCcCCCCCchhhhc
Q 042271 246 -WLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPG-LMDLNLSRNAFNGSIPSSFAD 323 (517)
Q Consensus 246 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~~~~~~~~~~ 323 (517)
..+..+++|+.|++++|.+.+.++ .+..+++|+.|++++|.++ .+|..+.. +++ |++|++++|.++ .+|..+..
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp~~~~~ 398 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIPNIFDA 398 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccchhhhh
Confidence 134789999999999999986665 8889999999999999998 88887766 788 999999999998 67777766
Q ss_pred CC--CCcEEeccccccccccchhHHh------hcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhh
Q 042271 324 MK--MLERVDISYNQLTGEIPERMAA------RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS 395 (517)
Q Consensus 324 l~--~L~~L~l~~~~i~~~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 395 (517)
++ +|++|++++|.+.+..|..+.. .+++|+.|++++|.++......+..+++|++|++++|.+.......+.
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 478 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence 54 8999999999998766644330 467999999999999966555667799999999999999844333333
Q ss_pred h-------cccCCeEEecCCCCCCccchhhc--CCCCCcEEECCCCcccccccccccCCCCccEEEc------cCCcccc
Q 042271 396 K-------CYLLEGLYLSDNHLTGEIPRWLG--NLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL------SNNSIFR 460 (517)
Q Consensus 396 ~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~n~l~~ 460 (517)
. +++|+.|++++|.+. .+|..+. .+++|+.|++++|++.+ +|..+..+++|++|++ ++|++.+
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred cccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence 2 339999999999999 7787776 99999999999999997 8889999999999999 4577777
Q ss_pred CCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCC
Q 042271 461 TLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHG 507 (517)
Q Consensus 461 ~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~ 507 (517)
..+..+. +++|++|++++|.++ .+|..+. ++|+.|++++|++++
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred cChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 7776665 899999999999995 4454444 799999999998864
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.7e-41 Score=344.83 Aligned_cols=490 Identities=21% Similarity=0.190 Sum_probs=339.4
Q ss_pred cCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEE
Q 042271 6 NLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVL 85 (517)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 85 (517)
++|+|||++| .+.+. +...+..+++|++|+|++|.+..+++++|+++++|++|+|++|++.+..+..|.++++|++|
T Consensus 53 ~~~~LdLs~N--~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFN--PLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTS--CCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCC--CCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 6788888888 44433 33337888888888888888888887788888888888888888876666778888888888
Q ss_pred EccCCccCCCCCcchhccccCcEEEccccccCC-cccccccCCCCCcEEeccCCccccccCCCcccCCCCCc----eeec
Q 042271 86 YASSNELTGNISPGLCELVLMRELHIDNNDLRG-SLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIE----ELIL 160 (517)
Q Consensus 86 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~----~L~l 160 (517)
++++|.+++..+..|+++++|++|++++|.++. ..|..+..+++|++|++++|++.+ +....+..+.+++ .+++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhc
Confidence 888888875555567888888888888888764 356777888888888888888765 3333455444433 4556
Q ss_pred ccCCCCCCCCCcccc----------------------cCccccccccccccc------ccccccCCCCCcceeeEeeccc
Q 042271 161 SNNHFFQSPISLEPL----------------------FNLSKRKTFDSEICA------ETESHYNSLTPKFQLTFISLSG 212 (517)
Q Consensus 161 ~~~~~~~~~~~~~~l----------------------~~l~~L~~l~l~~~~------~~~~~~~~~~~~~~L~~l~l~~ 212 (517)
+.|.+.......... ..+..++...+.... ........+.....+....+..
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 666542221111110 011111111110000 0000001111111222222221
Q ss_pred cccC---CCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCccc
Q 042271 213 YIDG---GTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFR 289 (517)
Q Consensus 213 ~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 289 (517)
.... ......+.....++.+.+..+.+.... . +.....++.|++.++.+..... ..++.|+.+++..+...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-D--FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-G--GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSC
T ss_pred hhhcccccchhhhhhhhccccccccccccccccc-c--cccchhhhhhhcccccccCcCc---ccchhhhhcccccccCC
Confidence 1111 111223344556666666666554322 1 2345678888888877654432 34567788888877665
Q ss_pred ccCChhhhhccCCCcEEEccCCcCCC--CCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccc-
Q 042271 290 GHIPVEIGTYLPGLMDLNLSRNAFNG--SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI- 366 (517)
Q Consensus 290 ~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~- 366 (517)
. .+.. ..+++|+.+++++|.+.. ..+..+..+.+|+.+++..+... ..+.. +..+++|+.+++..+......
T Consensus 363 ~-~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 363 N-AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp C-BCCC--CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSC-CTTCTTCCEEECTTSEEESTTS
T ss_pred C-Cccc--ccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccc-ccccccccchhhhhcccccccc
Confidence 2 2222 137889999999987752 34566778889999999888776 33332 445889999999988766543
Q ss_pred cccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC-CccchhhcCCCCCcEEECCCCcccccccccccCC
Q 042271 367 FSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT-GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL 445 (517)
Q Consensus 367 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 445 (517)
...+..+++++.+++++|.+....+..+..+++++.|++++|.+. ...|..+..+++|+.|++++|++.+..|..|.++
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 346778999999999999998778888899999999999999754 3567889999999999999999998888999999
Q ss_pred CCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCC-CcccEEECCCCcCCCCCC
Q 042271 446 NSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDS-PHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 446 ~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~l~l~~n~~~~~~~ 510 (517)
++|++|+|++|++++..+..+. +++|++|++++|++++..+..|..+ ++|++|+|++||++|.+.
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999888877666 7999999999999999999999988 689999999999998764
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-41 Score=343.26 Aligned_cols=463 Identities=18% Similarity=0.133 Sum_probs=318.0
Q ss_pred CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271 5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV 84 (517)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 84 (517)
...++++++++ .+.+ +|.. + .++|++|++++|.+..++..+|+++++|++|++++|.+.+..|++|.++++|++
T Consensus 31 ~~~~~l~ls~~--~L~~-ip~~-~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 31 ELESMVDYSNR--NLTH-VPKD-L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp --CCEEECTTS--CCCS-CCTT-S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCcEEEcCCC--CCcc-CCCC-C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 34467777777 4332 4432 1 267777777777777777667777777777777777777666677777777777
Q ss_pred EEccCCccCCCCCcchhccccCcEEEccccccCCc-ccccccCCCCCcEEeccCCccccccCCCcccCCCCC--ceeecc
Q 042271 85 LYASSNELTGNISPGLCELVLMRELHIDNNDLRGS-LPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSI--EELILS 161 (517)
Q Consensus 85 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L--~~L~l~ 161 (517)
|++++|.++ .+|.. .+++|++|++++|.+++. .|..|.++++|++|++++|.+.. ..+..+++| ++|+++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----CchhhhhhceeeEEEee
Confidence 777777776 45544 677777777777777642 34667777777777777777643 134444555 777777
Q ss_pred cCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCcc-ccccccCCcCEeeccCCcCC
Q 042271 162 NNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFP-KFLYHQHDLKNADLSHLNLS 240 (517)
Q Consensus 162 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~ 240 (517)
+|.+.........+..+. . ..-.+.+..+......+ ..+..+++|+.++++++...
T Consensus 178 ~n~l~~~~~~~~~l~~l~----------------------~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 234 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPN----------------------T-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234 (562)
T ss_dssp ESSCCCCSSSCCEEEECC----------------------E-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred cccccccccCcccccccC----------------------c-ceEEEEecCccchhhhhhhcccccceEEEecccccccc
Confidence 776311111111111110 0 11133555555444333 33456778888888876421
Q ss_pred C----CCChhhhhcccccceEeccCCccCCCccc---ccccCCcccEEEccCCcccccCChhhh----hccCCCcEEEcc
Q 042271 241 G----KFPNWLVENNANLERLLLADNSLFGSFWM---PIHSHQKLATLDVSNNFFRGHIPVEIG----TYLPGLMDLNLS 309 (517)
Q Consensus 241 ~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~ 309 (517)
. ..... +...+.++.+++.++.+.+.... .....++|++|++++|.+.+.+|..++ ..++.|+.+++.
T Consensus 235 ~~~l~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~ 313 (562)
T 3a79_B 235 CQRLMTFLSE-LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313 (562)
T ss_dssp HHHHHHHHHH-HHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred cchHHHHHHH-HhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence 0 11111 35667788888877665432111 112235899999999998877777653 224455555555
Q ss_pred CCcCCCCCc-hhhh---cCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcc
Q 042271 310 RNAFNGSIP-SSFA---DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNK 385 (517)
Q Consensus 310 ~~~i~~~~~-~~~~---~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 385 (517)
.+.+ .+| ..+. ...+|++|++++|.+.. .+ ....+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 314 ~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 314 NQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH-MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp ECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred ccee--ecChhhhhhhhccCcceEEEccCCCccc-cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 5555 223 2222 23679999999998763 22 12468899999999999998888889999999999999999
Q ss_pred ccccc--chhhhhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCC
Q 042271 386 FTGEI--LESLSKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL 462 (517)
Q Consensus 386 ~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 462 (517)
+.+.. +..+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.+.+..+..+. ++|++|++++|+++...
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip 466 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP 466 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC
Confidence 98532 4568899999999999999987344 4588899999999999999876665543 79999999999998766
Q ss_pred CCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCc
Q 042271 463 PSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN 511 (517)
Q Consensus 463 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~ 511 (517)
...+.+++|++|++++|.++..++..|..+++|+.|++++|+++|.+|.
T Consensus 467 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 6667789999999999999977666799999999999999999988763
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-40 Score=344.60 Aligned_cols=361 Identities=20% Similarity=0.265 Sum_probs=288.4
Q ss_pred cccCCcccccccCCCCCcEEeccCCcccc-----------------ccCCCccc--CCCCCceeecccCCCCCCCCCccc
Q 042271 114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQ-----------------NISSSPLM--HLTSIEELILSNNHFFQSPISLEP 174 (517)
Q Consensus 114 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-----------------~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~ 174 (517)
|.+++ +|..+.++++|++|++++|.+.+ .+|. .+. .+++|++|++++|.+ .+..+ ..
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l-~~~iP-~~ 510 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPN-MTQLP-DF 510 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTT-CCSCC-GG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCC-CccCh-HH
Confidence 67776 89999999999999999999976 2666 565 999999999999973 22221 23
Q ss_pred ccCcccccccccccccccccccCCCCCcceeeEeeccccc-cCC-CccccccccC-------CcCEeeccCCcCCCCCCh
Q 042271 175 LFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYI-DGG-TFPKFLYHQH-------DLKNADLSHLNLSGKFPN 245 (517)
Q Consensus 175 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~~~~~~-------~L~~l~l~~~~~~~~~~~ 245 (517)
+.+++ +|+.|++++|. +.+ .+|..+..++ +|+.|++++|.+. .+|.
T Consensus 511 l~~L~------------------------~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 511 LYDLP------------------------ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp GGGCS------------------------SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred HhCCC------------------------CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 33333 67778888776 666 6777666555 9999999999999 7877
Q ss_pred -hhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCC-CcEEEccCCcCCCCCchhhhc
Q 042271 246 -WLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPG-LMDLNLSRNAFNGSIPSSFAD 323 (517)
Q Consensus 246 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~~~~~~~~~~ 323 (517)
..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .+|..+.. +++ |+.|++++|.++ .+|..+..
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cCchhhhc
Confidence 23478999999999999988 444 8899999999999999998 88877766 778 999999999998 67777766
Q ss_pred CCC--CcEEeccccccccccchhH--Hh--hcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhh--
Q 042271 324 MKM--LERVDISYNQLTGEIPERM--AA--RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS-- 395 (517)
Q Consensus 324 l~~--L~~L~l~~~~i~~~~~~~~--~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-- 395 (517)
++. |+.|++++|.+.+.+|... .. .+++|+.|++++|.+.......+..+++|+.|++++|.+.......+.
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence 654 9999999999986554211 11 245899999999999865555566899999999999999843333222
Q ss_pred -----hcccCCeEEecCCCCCCccchhhc--CCCCCcEEECCCCcccccccccccCCCCccEEEccC------CccccCC
Q 042271 396 -----KCYLLEGLYLSDNHLTGEIPRWLG--NLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSN------NSIFRTL 462 (517)
Q Consensus 396 -----~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------n~l~~~~ 462 (517)
++++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+|++ |++.+..
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccC
Confidence 3459999999999999 7787886 89999999999999996 788899999999999977 7777777
Q ss_pred CCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccc
Q 042271 463 PSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513 (517)
Q Consensus 463 ~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~ 513 (517)
+..+. +++|++|++++|.++ .+|..+. ++|+.|+|++|++...-+..+
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred hHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 76665 899999999999995 5555444 699999999999975444443
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-38 Score=313.83 Aligned_cols=389 Identities=19% Similarity=0.143 Sum_probs=226.7
Q ss_pred eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCC-CcchhccccCcEEEccc
Q 042271 35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNI-SPGLCELVLMRELHIDN 113 (517)
Q Consensus 35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~L~~ 113 (517)
+.++.+++.+..+|. + .++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+ +..+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 345666666666664 2 267777777777777666777777777777777777665333 44567777777777777
Q ss_pred cccCCcccccccCCCCCcEEeccCCccccccC-CCcccCCCCCceeecccCCCCCCCCCcccccCccccccccccccccc
Q 042271 114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNIS-SSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAET 192 (517)
Q Consensus 114 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 192 (517)
|.+++..|.+|.++++|++|++++|.+.+..+ ...+..+++|++|++++|.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l--------------------------- 141 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI--------------------------- 141 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC---------------------------
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc---------------------------
Confidence 77776666777777777777777777654222 12356666666666666653
Q ss_pred ccccCCCCCcceeeEeeccccccCCCcccc-ccccCCcCEeeccCCcCCCCCChhhhhcc--cccceEeccCCccCCCcc
Q 042271 193 ESHYNSLTPKFQLTFISLSGYIDGGTFPKF-LYHQHDLKNADLSHLNLSGKFPNWLVENN--ANLERLLLADNSLFGSFW 269 (517)
Q Consensus 193 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~ 269 (517)
....|.. +..+++|+.+++++|.+.+..+..+ ..+ .+++.++++++.+.+...
T Consensus 142 -----------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~ 197 (455)
T 3v47_A 142 -----------------------KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL-LNFQGKHFTLLRLSSITLQDMNE 197 (455)
T ss_dssp -----------------------CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS-GGGTTCEEEEEECTTCBCTTCST
T ss_pred -----------------------CccCcccccCCCCcccEEeCCCCcccccChhhh-hccccccccccccccCcccccch
Confidence 1111221 4445566666666665554443332 111 344444444444332211
Q ss_pred cccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcC---CCCcEEeccccccccccchhHH
Q 042271 270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM---KMLERVDISYNQLTGEIPERMA 346 (517)
Q Consensus 270 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l---~~L~~L~l~~~~i~~~~~~~~~ 346 (517)
..+.. ......+ .+++|++|++++|.+++..+..+... ++|+.|++++|...+...
T Consensus 198 ~~~~~----------------~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---- 256 (455)
T 3v47_A 198 YWLGW----------------EKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF---- 256 (455)
T ss_dssp TCTTH----------------HHHCCTT-TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT----
T ss_pred hhccc----------------ccccccc-ccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc----
Confidence 11000 0000000 12334444444444333322222221 334444444443221100
Q ss_pred hhcCCCcEEEccCCccccccccccc--CCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCC
Q 042271 347 ARCFSLEILALSNNSLQGHIFSEKF--NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL 424 (517)
Q Consensus 347 ~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 424 (517)
..+.+.+.....+. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 257 -----------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 257 -----------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp -----------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred -----------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 00001111111111 23567777777777766666667777777777777777776666677777777
Q ss_pred cEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCC
Q 042271 425 EDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN 503 (517)
Q Consensus 425 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n 503 (517)
++|++++|.+.+..+..|..+++|++|++++|++++..+..+. +++|++|++++|.+++.++..|..+++|++|++++|
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 7777777777766677777778888888888887776665554 678888888888888777777888888888888888
Q ss_pred cCCCCCC
Q 042271 504 SLHGSIP 510 (517)
Q Consensus 504 ~~~~~~~ 510 (517)
++++.+|
T Consensus 406 ~l~~~~~ 412 (455)
T 3v47_A 406 PWDCSCP 412 (455)
T ss_dssp CBCCCTT
T ss_pred CcccCCC
Confidence 8888877
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.4e-38 Score=323.27 Aligned_cols=467 Identities=20% Similarity=0.174 Sum_probs=353.7
Q ss_pred CCCCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCC
Q 042271 1 FRKFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMT 80 (517)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 80 (517)
|+.+++||+|++++| .+.+. +..++..+++|++|+|++|.+..++.+.|+++++|++|++++|.+++..+..|++++
T Consensus 72 f~~l~~L~~L~Ls~N--~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 72 FFSFPELQVLDLSRC--EIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTCTTCCEEECTTC--CCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HhCCCCCCEEECCCC--cCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 678999999999999 55444 333489999999999999999999988999999999999999999977778899999
Q ss_pred CCcEEEccCCccCC-CCCcchhccccCcEEEccccccCCcccccccCCCCC----cEEeccCCccccccCCCcccCCCCC
Q 042271 81 SLQVLYASSNELTG-NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL----RVLDVSDNQLTQNISSSPLMHLTSI 155 (517)
Q Consensus 81 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L----~~L~L~~~~~~~~~~~~~l~~l~~L 155 (517)
+|++|++++|.+.. ..|..++.+++|++|++++|.+++..+..+..++++ ..++++.|.+.. ++...+ ....+
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~-~~~~~ 226 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF-KEIRL 226 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTT-TTCEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc-cCcccc-cchhh
Confidence 99999999999874 457788999999999999999998777777665544 478888887754 333222 22334
Q ss_pred ceeecccCCCC-----------------------------CCCCCcccccCcccccccccccc---cccccccCCCCCcc
Q 042271 156 EELILSNNHFF-----------------------------QSPISLEPLFNLSKRKTFDSEIC---AETESHYNSLTPKF 203 (517)
Q Consensus 156 ~~L~l~~~~~~-----------------------------~~~~~~~~l~~l~~L~~l~l~~~---~~~~~~~~~~~~~~ 203 (517)
+.+++.++... ........+..+..+....+... .........+....
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence 44554444210 00011111222222222222221 11111222223334
Q ss_pred eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271 204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV 283 (517)
Q Consensus 204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (517)
.++.+.+..+..... ..+.....++.+++.++.+.+..+ ..++.++.+.+.++..... .....+++|+.+++
T Consensus 307 ~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 307 NVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL 378 (635)
T ss_dssp TCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEEC
T ss_pred ccccccccccccccc--cccccchhhhhhhcccccccCcCc----ccchhhhhcccccccCCCC--cccccccccccchh
Confidence 566666666544322 234556789999999988774433 2457889999888876443 33456889999999
Q ss_pred cCCcccc--cCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCc
Q 042271 284 SNNFFRG--HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNS 361 (517)
Q Consensus 284 ~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~ 361 (517)
+.+.+.. ..+..... ..+++.+++..+.... .+..+..+++|+.+++.+++.....+...+..+++++.++++.|.
T Consensus 379 s~n~l~~~~~~~~~~~~-~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CSSCCBEEEECCHHHHS-CSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hccccccccccccchhh-hhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence 9987742 33444444 7899999999998763 445678899999999999988767777777889999999999999
Q ss_pred ccccccccccCCCCCcEEEccCccc-ccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccc
Q 042271 362 LQGHIFSEKFNLTNLMTLQLDGNKF-TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPI 440 (517)
Q Consensus 362 ~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 440 (517)
+.......+..++.++.|++++|.+ ....+..+..+++|++|++++|++.+..|..|.++++|++|++++|++.+..+.
T Consensus 457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~ 536 (635)
T 4g8a_A 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 536 (635)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG
T ss_pred cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh
Confidence 9888888888999999999999975 345677889999999999999999988889999999999999999999988888
Q ss_pred cccCCCCccEEEccCCccccCCCCCCC--cccccEEEccCCcCC
Q 042271 441 EFCQLNSLKILDLSNNSIFRTLPSCFS--PASIEQLHLSKNKIE 482 (517)
Q Consensus 441 ~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~ 482 (517)
.|.++++|++|++++|++++..+..+. +++|++|++++|.+.
T Consensus 537 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 537 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999999999999998888776 378999999999886
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-38 Score=321.21 Aligned_cols=437 Identities=18% Similarity=0.153 Sum_probs=296.7
Q ss_pred CcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcE
Q 042271 5 KNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQV 84 (517)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 84 (517)
+++++|++++| .+.+..+.. ++.+++|++|++++|.+..+++++|.++++|++|++++|.+. .+|.. .+++|++
T Consensus 52 ~~L~~L~Ls~N--~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQN--SISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSS--CCCCCCGGG-TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred CCcCEEECCCC--CccccChhh-hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence 68999999999 555554444 899999999999999999998879999999999999999998 56655 8999999
Q ss_pred EEccCCccCC-CCCcchhccccCcEEEccccccCCcccccccCCCCC--cEEeccCCcc--ccccCCCcccCCCC-Ccee
Q 042271 85 LYASSNELTG-NISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSL--RVLDVSDNQL--TQNISSSPLMHLTS-IEEL 158 (517)
Q Consensus 85 L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L--~~L~L~~~~~--~~~~~~~~l~~l~~-L~~L 158 (517)
|++++|.+.+ ..|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ .+..+. .+..+.. .-++
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l 201 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVLHL 201 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCC-EEEECCEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcc-cccccCcceEEE
Confidence 9999999985 3457899999999999999999853 45556666 9999999988 553333 5555431 1145
Q ss_pred ecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeecccccc----CCCccccccccCCcCEeec
Q 042271 159 ILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYID----GGTFPKFLYHQHDLKNADL 234 (517)
Q Consensus 159 ~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~----~~~~~~~~~~~~~L~~l~l 234 (517)
++++|.+. .......+..++ +|+.+++.++.. .......+..++.++.+++
T Consensus 202 ~l~~n~~~-~~~~~~~~~~l~------------------------~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 202 VFHPNSLF-SVQVNMSVNALG------------------------HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EECSSSCC-CCCCEEEESSEE------------------------EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred EecCccch-hhhhhhcccccc------------------------eEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 66666532 122222233333 555555554421 0112233455666666666
Q ss_pred cCCcCCCCCChhhh--hcccccceEeccCCccCCCccccc-----ccCCcccEEEccCCcccccCCh-hhhhc--cCCCc
Q 042271 235 SHLNLSGKFPNWLV--ENNANLERLLLADNSLFGSFWMPI-----HSHQKLATLDVSNNFFRGHIPV-EIGTY--LPGLM 304 (517)
Q Consensus 235 ~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~-~~~~~--~~~L~ 304 (517)
..+.+.+.....+. ...++|++|++++|.+.+..+..+ ..++.|+.+++..+.+ .+|. .+... .++++
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence 66655432111110 122477788887777765554444 5555566666665555 3442 22221 24688
Q ss_pred EEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccc--cccccCCCCCcEEEcc
Q 042271 305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHI--FSEKFNLTNLMTLQLD 382 (517)
Q Consensus 305 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~ 382 (517)
+|++++|.+.... ....+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++.. +..+..+++|++|+++
T Consensus 335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred EEEccCCCccccc--CccCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 8888888775322 125677888888888887754443 3455778888888888777532 3456778888888888
Q ss_pred Cccccc-ccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccC
Q 042271 383 GNKFTG-EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT 461 (517)
Q Consensus 383 ~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 461 (517)
+|.+.+ .....+..+++|++|++++|.+.+..+..+. ++|+.|++++|++. .+|..+..+++|++|++++|+++..
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCC
Confidence 888875 3334466778888888888887755544333 68888888888887 4666555888888888888888765
Q ss_pred CCCCCC-cccccEEEccCCcCCcc
Q 042271 462 LPSCFS-PASIEQLHLSKNKIEGR 484 (517)
Q Consensus 462 ~~~~~~-~~~L~~L~l~~n~~~~~ 484 (517)
.+..+. +++|++|++++|.+...
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CHHHHhcCCCCCEEEecCCCcCCC
Confidence 554233 78888888888887653
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.6e-37 Score=303.14 Aligned_cols=362 Identities=20% Similarity=0.166 Sum_probs=222.6
Q ss_pred CCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccC-CccccccCCCCCcEEEccCCccCCCCCcchhccccCcEE
Q 042271 31 KPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRG-SLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMREL 109 (517)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 109 (517)
.++|++|+++++.+..+.+..++++++|++|++++|.+.+ ..+..|.++++|++|++++|.+.+..|..++.+++|++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 3789999999999999977799999999999999999864 446789999999999999999998778899999999999
Q ss_pred EccccccCCccccc--ccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccc
Q 042271 110 HIDNNDLRGSLPLC--LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSE 187 (517)
Q Consensus 110 ~L~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~ 187 (517)
++++|.+++..+.. +..+++|++|++++|.+.+..+...+..+++|++|++++|.+...
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------- 169 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI------------------- 169 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC-------------------
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc-------------------
Confidence 99999998755655 999999999999999997644553488999999999999874211
Q ss_pred cccccccccCCCCCcceeeEeeccccccCCCcccccccc--CCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccC
Q 042271 188 ICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQ--HDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLF 265 (517)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (517)
.+..+..+ ..++.++++++.+.+..+.++..
T Consensus 170 -------------------------------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------- 202 (455)
T 3v47_A 170 -------------------------------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------- 202 (455)
T ss_dssp -------------------------------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------
T ss_pred -------------------------------ChhhhhccccccccccccccCcccccchhhccc----------------
Confidence 11122222 57899999999887544332210
Q ss_pred CCcccccccCCcccEEEccCCcccccCChhhhhc--cCCCcEEEccCCcCCCC----------Cchhhhc--CCCCcEEe
Q 042271 266 GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTY--LPGLMDLNLSRNAFNGS----------IPSSFAD--MKMLERVD 331 (517)
Q Consensus 266 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~i~~~----------~~~~~~~--l~~L~~L~ 331 (517)
.....+..+++|++|++++|.+++..+..+... .++++.|++++|...+. ....+.. .++|++|+
T Consensus 203 -~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (455)
T 3v47_A 203 -EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281 (455)
T ss_dssp -HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEE
T ss_pred -cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEE
Confidence 001112234566666666666654444444331 25667777766654321 1111111 23444445
Q ss_pred ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271 332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411 (517)
Q Consensus 332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 411 (517)
+++|.+.+ .+...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 282 l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 282 LSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp CCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred ecCccccc-cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 54444442 22222333444444444444444443444444444444444444444333444444444444444444444
Q ss_pred CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccc
Q 042271 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR 460 (517)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 460 (517)
+..|..+..+++|++|++++|++.+..+..+..+++|++|++++|++++
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 3334444444444444444444443333334444444444444444433
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-35 Score=293.73 Aligned_cols=345 Identities=25% Similarity=0.319 Sum_probs=217.4
Q ss_pred CcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEc
Q 042271 32 PSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHI 111 (517)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L 111 (517)
+++++|+++++.+..++. +..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+. +. ++.+++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEEC
Confidence 445555555444444432 4455555555555555543322 45555555555555554422 22 455555555555
Q ss_pred cccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccc
Q 042271 112 DNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAE 191 (517)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 191 (517)
++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++++.
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~~~--------------------------- 167 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGNQV--------------------------- 167 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEESC---------------------------
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCCcc---------------------------
Confidence 5555543221 4455555555555554432 21 24444455555443211
Q ss_pred cccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccc
Q 042271 192 TESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMP 271 (517)
Q Consensus 192 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (517)
.. . ..+..+++|+.|+++++.+.+. +. +..+++|++|++++|.+.+..+
T Consensus 168 ------------------------~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 168 ------------------------TD-L-KPLANLTTLERLDISSNKVSDI-SV--LAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp ------------------------CC-C-GGGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCSEEECCSSCCCCCGG--
T ss_pred ------------------------cC-c-hhhccCCCCCEEECcCCcCCCC-hh--hccCCCCCEEEecCCccccccc--
Confidence 00 1 1255667777788877776642 22 3577888888888888766543
Q ss_pred cccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271 272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS 351 (517)
Q Consensus 272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~ 351 (517)
+..+++|+.|++++|.++ .++ .+. .+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++
T Consensus 217 ~~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~ 288 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP--LAGLTA 288 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG--GTTCTT
T ss_pred ccccCCCCEEECCCCCcc-cch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc--ccCCCc
Confidence 667788888888888876 333 233 37888888888888875433 7778888888888888773 333 556788
Q ss_pred CcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431 (517)
Q Consensus 352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 431 (517)
|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+. ..+..+++|+.|++++
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGH 362 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCC
Confidence 8888888888776433 6678888888888888875443 67788888888888887754 3577788888888888
Q ss_pred CcccccccccccCCCCccEEEccCCccccC
Q 042271 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRT 461 (517)
Q Consensus 432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 461 (517)
|++.+..| +..+++|++|++++|++++.
T Consensus 363 n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 363 NQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CccCccch--hhcCCCCCEEeccCCcccCC
Confidence 88876555 67788888888888887664
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.4e-36 Score=297.14 Aligned_cols=243 Identities=26% Similarity=0.310 Sum_probs=97.2
Q ss_pred CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307 (517)
Q Consensus 228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 307 (517)
+|+.+++++|.+.+ +|. +..+++|+.|++++|.+.+... ..++|++|++++|.+. .+|. +. .+++|++|+
T Consensus 174 ~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~ 243 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILE-ELPE-LQ-NLPFLTTIY 243 (454)
T ss_dssp TCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEE
T ss_pred cccEEECcCCcCCc-Ccc--ccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCC-cccc-cC-CCCCCCEEE
Confidence 55555555555553 332 2455556666665555543211 1135555555555554 4442 22 255555555
Q ss_pred ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT 387 (517)
Q Consensus 308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (517)
+++|.+++ ++. .+++|++|++++|.+. .+|.. +++|+.|++++|.+++... ..++|++|++++|.+.
T Consensus 244 l~~N~l~~-l~~---~~~~L~~L~l~~N~l~-~l~~~----~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 244 ADNNLLKT-LPD---LPPSLEALNVRDNYLT-DLPEL----PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIR 310 (454)
T ss_dssp CCSSCCSS-CCS---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCS
T ss_pred CCCCcCCc-ccc---cccccCEEECCCCccc-ccCcc----cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCC
Confidence 55555553 221 1245555555555555 23321 2455555555555543210 1245555555555554
Q ss_pred cccchhhhhc-ccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccc--CCCC
Q 042271 388 GEILESLSKC-YLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR--TLPS 464 (517)
Q Consensus 388 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~ 464 (517)
+.. .. ++|+.|++++|++.+ +|.. +++|+.|++++|.+.. +|. .+++|++|++++|++++ ..|.
T Consensus 311 ~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 311 SLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp EEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred ccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence 211 11 355555555555553 3321 3555555555555552 333 24555555555555544 2222
Q ss_pred CCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCC--CCCccccCC
Q 042271 465 CFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHG--SIPNQIGRL 516 (517)
Q Consensus 465 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~--~~~~~~~~~ 516 (517)
.+ ..|. .|.+.+.++. .+++|+.|++++|++++ .+|.++++|
T Consensus 378 ~l-----~~L~--~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 378 SV-----EDLR--MNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp TC-----CEEE--CCC--------------------------------------
T ss_pred HH-----Hhhh--hccccccccc---ccCcCCEEECCCCcCCccccchhhHhhe
Confidence 21 1111 1111111111 11566666666666665 666666554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.8e-35 Score=290.95 Aligned_cols=348 Identities=25% Similarity=0.328 Sum_probs=260.7
Q ss_pred hhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcE
Q 042271 53 RQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRV 132 (517)
Q Consensus 53 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 132 (517)
..+++++.|++.++.+.. ++ .+..+++|++|++++|.+.+ .+. +..+++|++|++++|.+++..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 457899999999998873 44 37889999999999998884 444 8899999999999999985544 889999999
Q ss_pred EeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccc
Q 042271 133 LDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSG 212 (517)
Q Consensus 133 L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 212 (517)
|++++|.+.+ ++ .+..+++|++|++++|.+..
T Consensus 117 L~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~--------------------------------------------- 148 (466)
T 1o6v_A 117 LTLFNNQITD-ID--PLKNLTNLNRLELSSNTISD--------------------------------------------- 148 (466)
T ss_dssp EECCSSCCCC-CG--GGTTCTTCSEEEEEEEEECC---------------------------------------------
T ss_pred EECCCCCCCC-Ch--HHcCCCCCCEEECCCCccCC---------------------------------------------
Confidence 9999998865 33 37888999999998886311
Q ss_pred cccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccC
Q 042271 213 YIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHI 292 (517)
Q Consensus 213 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 292 (517)
. ..+..+++|+.+++. +.+.+ .+. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..
T Consensus 149 ------~-~~~~~l~~L~~L~l~-~~~~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 149 ------I-SALSGLTSLQQLSFG-NQVTD-LKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp ------C-GGGTTCTTCSEEEEE-ESCCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred ------C-hhhccCCcccEeecC-CcccC-chh--hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccc
Confidence 1 124456677777775 33332 222 46788899999988887654 34777888888888888887433
Q ss_pred ChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccC
Q 042271 293 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFN 372 (517)
Q Consensus 293 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 372 (517)
+ + ..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+... +..
T Consensus 216 ~--~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 216 P--L-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp G--G-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred c--c-cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--ccC
Confidence 3 2 2378888888888888743 467788888888888888874333 5567888888888888776443 667
Q ss_pred CCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEE
Q 042271 373 LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILD 452 (517)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 452 (517)
+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|+
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 8888888888888875333 6778888888888888876544 67788888888888887754 4677788888888
Q ss_pred ccCCccccCCCCCCCcccccEEEccCCcCCcc
Q 042271 453 LSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR 484 (517)
Q Consensus 453 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 484 (517)
+++|++++..+ ...+++|++|++++|.+++.
T Consensus 360 l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 360 AGHNQISDLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCccch-hhcCCCCCEEeccCCcccCC
Confidence 88888877665 44478888888888877763
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-34 Score=282.50 Aligned_cols=411 Identities=23% Similarity=0.232 Sum_probs=246.1
Q ss_pred CCcCceeeCCCccccccccchhhccCCCCcceEEeccccccC-Ccchhhhhhccc-------------CcEEEecCCccc
Q 042271 4 FKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKN-TILDQGLRQLVH-------------LQELYIGGYDLR 69 (517)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~-------------L~~L~l~~~~~~ 69 (517)
.++||+|+++++ .+ +.+|.. ++++++|++|+++++.+. .++. .++.+++ +++|++++|.++
T Consensus 10 ~~~L~~L~l~~n--~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 10 NTFLQEPLRHSS--NL-TEMPVE-AENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred cccchhhhcccC--ch-hhCChh-HhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 467888888888 55 677766 788888888888866654 3443 5665554 488888888777
Q ss_pred CCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcc
Q 042271 70 GSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPL 149 (517)
Q Consensus 70 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 149 (517)
+ +|. ..++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|++.+ ++ .+
T Consensus 85 ~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp--~~ 149 (454)
T 1jl5_A 85 S-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP--EL 149 (454)
T ss_dssp C-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC--CC
T ss_pred c-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc--cc
Confidence 4 333 23678888888887774 5543 3678888888887763 2321 1578888888888764 55 37
Q ss_pred cCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCc
Q 042271 150 MHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDL 229 (517)
Q Consensus 150 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 229 (517)
..+++|++|++++|.+...+.. ..+|+++++++|.+.+ +| .+..+++|
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~~------------------------------~~~L~~L~L~~n~l~~-l~-~~~~l~~L 197 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPDL------------------------------PPSLEFIAAGNNQLEE-LP-ELQNLPFL 197 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCCC------------------------------CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred CCCCCCCEEECCCCcCcccCCC------------------------------cccccEEECcCCcCCc-Cc-cccCCCCC
Confidence 7788888888888764221110 1278889999887766 45 57889999
Q ss_pred CEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEcc
Q 042271 230 KNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLS 309 (517)
Q Consensus 230 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 309 (517)
+.+++++|.+.+ +|.. .++|++|++++|.+... + .+..+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 198 ~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~ 265 (454)
T 1jl5_A 198 TAIYADNNSLKK-LPDL----PLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVR 265 (454)
T ss_dssp CEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECC
T ss_pred CEEECCCCcCCc-CCCC----cCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECC
Confidence 999999999885 4432 36899999999988743 3 4889999999999999987 4554 25799999999
Q ss_pred CCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccc
Q 042271 310 RNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGE 389 (517)
Q Consensus 310 ~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 389 (517)
+|.+++ ++.. +++|++|++++|.+.+ ++. ..++|+.|++++|.+++.. ...++|++|++++|.+.+
T Consensus 266 ~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~- 331 (454)
T 1jl5_A 266 DNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIE- 331 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSC-
T ss_pred CCcccc-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCccc----CCcCcCCEEECCCCcccc-
Confidence 999985 4432 4889999999999884 332 1368999999999987532 123699999999999985
Q ss_pred cchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccc--cccccccCCCCccEEEccCCccccCCCCCCC
Q 042271 390 ILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG--PIPIEFCQLNSLKILDLSNNSIFRTLPSCFS 467 (517)
Q Consensus 390 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 467 (517)
.+.. +++|++|++++|.+. .+|. .+++|++|++++|++.+ .+|..+.. + +.|.+.+..+..
T Consensus 332 lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~-- 394 (454)
T 1jl5_A 332 LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL-- 394 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC----------
T ss_pred cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc--
Confidence 3332 589999999999998 4565 57999999999999987 45555433 2 234454544442
Q ss_pred cccccEEEccCCcCCc--cchhhhcCCCcccEEECCCCcCCCCCCccccC
Q 042271 468 PASIEQLHLSKNKIEG--RLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR 515 (517)
Q Consensus 468 ~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~ 515 (517)
+++|++|++++|.+++ .+| ++++.|.+.+|.+.+.+|.+.+.
T Consensus 395 ~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 395 PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp --------------------------------------------------
T ss_pred cCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccCHHH
Confidence 5788888888888876 333 35777788888888777765543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-34 Score=282.12 Aligned_cols=227 Identities=19% Similarity=0.157 Sum_probs=117.3
Q ss_pred ccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCc
Q 042271 225 HQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLM 304 (517)
Q Consensus 225 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 304 (517)
.+++|+.+++++|.+.+ ++ +..+++|++|++++|.+.+. .+..+++|+.|++++|.+++ +| +. .+++|+
T Consensus 168 ~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~-~l~~L~ 236 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT-PLTQLT 236 (457)
T ss_dssp TCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT-TCTTCS
T ss_pred cCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc-ccCCCC
Confidence 44555555555555553 22 23455666666666655443 24555566666666666552 44 22 255666
Q ss_pred EEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCc
Q 042271 305 DLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGN 384 (517)
Q Consensus 305 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 384 (517)
.|++++|.+++.. +..+++|+.|+++++ +|+.+++++|...+..+ +..+++|+.|++++|
T Consensus 237 ~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 237 YFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHN 296 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTC
T ss_pred EEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCC
Confidence 6666666655432 233445555554433 23334444444332222 234555555555555
Q ss_pred ccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCC
Q 042271 385 KFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS 464 (517)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 464 (517)
...+..+. ..++|+.|+++ ++++|+.|++++|++.+. .+..+++|+.|++++|++++
T Consensus 297 ~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~---- 353 (457)
T 3bz5_A 297 TQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD---- 353 (457)
T ss_dssp TTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB----
T ss_pred cccceecc---CCCcceEechh-------------hcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC----
Confidence 54322221 12233333332 235666666666666652 25566666667766666654
Q ss_pred CCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccc
Q 042271 465 CFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQI 513 (517)
Q Consensus 465 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~ 513 (517)
.+.|+.|.+++|.+.+. ..+..|..+++++|.++|.+|..+
T Consensus 354 ---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 ---FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp ---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred ---ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 24555556666665544 133456666677777777666654
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=280.49 Aligned_cols=229 Identities=20% Similarity=0.213 Sum_probs=133.3
Q ss_pred cccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEe
Q 042271 252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD 331 (517)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 331 (517)
++|++|++++|.+.......+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 3334444444433333333455566777777777777633333333 366777777777777655555666677777777
Q ss_pred ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271 332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411 (517)
Q Consensus 332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 411 (517)
+++|.+. .++...+..+++|+.|++++|...+..+.......+|++|++++|.++......+..+++|+.|++++|.+.
T Consensus 183 l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 183 LRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCCcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 7777666 344444555666666666666554444333334446666666666665444445566666666666666666
Q ss_pred CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCC
Q 042271 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIE 482 (517)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~ 482 (517)
+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|+++...+..+. +++|++|++++|.+.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 44455566666666666666666655555666666666666666666554444433 556666666666554
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.1e-34 Score=282.36 Aligned_cols=319 Identities=19% Similarity=0.133 Sum_probs=179.8
Q ss_pred EEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccc
Q 042271 36 FLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNND 115 (517)
Q Consensus 36 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 115 (517)
.+++++..+..+|. .+ .+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCcCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 44555444555543 11 2355555555555554445555555555555555555554444555555555555555555
Q ss_pred cCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccc
Q 042271 116 LRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESH 195 (517)
Q Consensus 116 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 195 (517)
++...+..|.++++|++|++++|.+... .+..+..+++|++|++++|.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~------------------------------- 139 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDND------------------------------- 139 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTT-------------------------------
T ss_pred CCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCc-------------------------------
Confidence 5543334455555555555555555432 22244444555555554443
Q ss_pred cCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccC
Q 042271 196 YNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSH 275 (517)
Q Consensus 196 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (517)
+.+..+.. +..+++|++|++++|.+.......+..+
T Consensus 140 -------------------------------------------l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 140 -------------------------------------------LVYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp -------------------------------------------CCEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred -------------------------------------------cceeChhh-ccCCCCCCEEECCCCcCcccChhHhccc
Confidence 22211211 2355677777777777666555556666
Q ss_pred CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL 355 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 355 (517)
++|+.|++++|.+.+ ++...+..+++|+.|++++|...+.++.......+|++|++++|.+. .++...+..+++|+.|
T Consensus 176 ~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 176 HGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFL 253 (477)
T ss_dssp TTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEE
T ss_pred CCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCee
Confidence 677777777766653 33333333666677777666555444444444456666666666666 5555555566666666
Q ss_pred EccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccc
Q 042271 356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE 435 (517)
Q Consensus 356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 435 (517)
++++|.+++.....+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 66666666555555666666666666666666555566666666666666666666555555666666666666666654
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.2e-33 Score=272.88 Aligned_cols=395 Identities=20% Similarity=0.183 Sum_probs=244.1
Q ss_pred cCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCc
Q 042271 28 GESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMR 107 (517)
Q Consensus 28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 107 (517)
++.+++|++|+++++.+..++ .++.+++|++|++++|.+.+. + +..+++|++|++++|.+++ ++ ++.+++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~ 109 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLT 109 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCC
T ss_pred hhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCC
Confidence 567788888888887777775 478888888888888888753 3 7778888888888888874 33 77788888
Q ss_pred EEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccc
Q 042271 108 ELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSE 187 (517)
Q Consensus 108 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~ 187 (517)
+|++++|.+++ ++ +..+++|++|++++|++.+ + .+..+++|++|++++|.. .... .+..++
T Consensus 110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~-~~~~---~~~~l~-------- 170 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKK-ITKL---DVTPQT-------- 170 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSC-CCCC---CCTTCT--------
T ss_pred EEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCc-cccc---ccccCC--------
Confidence 88888888875 33 7788888888888888764 3 367778888888888752 1111 122222
Q ss_pred cccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCC
Q 042271 188 ICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS 267 (517)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (517)
+|+.+++++|.+.+ +| +..+++|+.+++++|.+.+. + +..+++|+.|++++|.+.+.
T Consensus 171 ----------------~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i 227 (457)
T 3bz5_A 171 ----------------QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI 227 (457)
T ss_dssp ----------------TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC
T ss_pred ----------------cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc
Confidence 55555565555544 22 55667777777777777653 2 35667788888887777663
Q ss_pred cccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcC----------CCCCchhhhcCCCCcEEecccccc
Q 042271 268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAF----------NGSIPSSFADMKMLERVDISYNQL 337 (517)
Q Consensus 268 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i----------~~~~~~~~~~l~~L~~L~l~~~~i 337 (517)
. +..+++|+.|++++|.+++ ++. ..+++|+.|+++++.+ .+.++ +..+++|+.|++++|..
T Consensus 228 p---~~~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 228 D---VTPLTQLTYFDCSVNPLTE-LDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp C---CTTCTTCSEEECCSSCCSC-CCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred C---ccccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence 2 6677778888888887763 332 1256666666655432 22222 23444555555555544
Q ss_pred ccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchh
Q 042271 338 TGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRW 417 (517)
Q Consensus 338 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 417 (517)
.+.+|. ..++|+.++ +..+++|++|++++|.+++. .+..+++|+.|++++|++.+
T Consensus 299 l~~l~~----~~~~L~~L~-------------l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~----- 353 (457)
T 3bz5_A 299 LYLLDC----QAAGITELD-------------LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD----- 353 (457)
T ss_dssp CCEEEC----TTCCCSCCC-------------CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB-----
T ss_pred cceecc----CCCcceEec-------------hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC-----
Confidence 333332 122333332 33446788888888887753 26777888888888887763
Q ss_pred hcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC--cccccEEEccCCcCCccc--hhhhcCC-
Q 042271 418 LGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS--PASIEQLHLSKNKIEGRL--ESIIHDS- 492 (517)
Q Consensus 418 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~--~~~l~~~- 492 (517)
++.|+.|.+.+|.+.+. ..+..|+.+++++|++++..|..+. ...+.......+...... .-...+.
T Consensus 354 ---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~ 425 (457)
T 3bz5_A 354 ---FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLS 425 (457)
T ss_dssp ---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSSEEEETTTTEEEESSCC
T ss_pred ---ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCCccccCCCCeeEEEecc
Confidence 24556666777777653 2445677788888888877765443 223333333322211000 0001111
Q ss_pred ----CcccEEECCCCcCCCCCCcccc
Q 042271 493 ----PHLVTLDLSCNSLHGSIPNQIG 514 (517)
Q Consensus 493 ----~~L~~l~l~~n~~~~~~~~~~~ 514 (517)
.-+.+...++|.++|.|+..+.
T Consensus 426 ~~~~~~~y~~~~~~~~fsG~i~~p~~ 451 (457)
T 3bz5_A 426 TDNPAVTYTFTSENGAIVGTVTTPFE 451 (457)
T ss_dssp TTSCEECEEEECTTSSEEEEEEEEBC
T ss_pred CCCceEEEEEecCCcEEeeEeccccc
Confidence 1344445557778877766553
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-31 Score=253.78 Aligned_cols=306 Identities=25% Similarity=0.355 Sum_probs=177.1
Q ss_pred hhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCc
Q 042271 52 LRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLR 131 (517)
Q Consensus 52 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 131 (517)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ + .++..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 5677788888888877763 33 36777788888888777773 333 7777778888887777764 2 3577777777
Q ss_pred EEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeecc
Q 042271 132 VLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLS 211 (517)
Q Consensus 132 ~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 211 (517)
+|++++|.+.+ ++. +..+++|++|++++|....
T Consensus 114 ~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~-------------------------------------------- 146 (347)
T 4fmz_A 114 ELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLS-------------------------------------------- 146 (347)
T ss_dssp EEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCC--------------------------------------------
T ss_pred EEECcCCcccC-chh--hccCCceeEEECCCCCCcc--------------------------------------------
Confidence 77777777653 322 6667777777777664100
Q ss_pred ccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCccccc
Q 042271 212 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH 291 (517)
Q Consensus 212 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 291 (517)
. +..+..+++|+.++++++.+. +... +..+++|++|++++|.+. .
T Consensus 147 ------~-~~~~~~l~~L~~L~l~~~~~~-------------------------~~~~--~~~l~~L~~L~l~~n~l~-~ 191 (347)
T 4fmz_A 147 ------D-LSPLSNMTGLNYLTVTESKVK-------------------------DVTP--IANLTDLYSLSLNYNQIE-D 191 (347)
T ss_dssp ------C-CGGGTTCTTCCEEECCSSCCC-------------------------CCGG--GGGCTTCSEEECTTSCCC-C
T ss_pred ------c-ccchhhCCCCcEEEecCCCcC-------------------------Cchh--hccCCCCCEEEccCCccc-c
Confidence 0 111233444444444444443 2211 334445555555555544 2
Q ss_pred CChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccccccccc
Q 042271 292 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF 371 (517)
Q Consensus 292 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 371 (517)
++. ...+++|+.+++++|.+.+..+ +..+++|++|++++|.+. ..+. +..+++|+.|++++|.+++. ..+.
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHh
Confidence 222 2225566666666665553322 555666666666666655 2222 34455666666666655542 3355
Q ss_pred CCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEE
Q 042271 372 NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKIL 451 (517)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 451 (517)
.+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..+ +..+++|++|
T Consensus 263 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 338 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence 566666666666666542 345566666666666666665555666666666666666666664433 5556666666
Q ss_pred EccCCcc
Q 042271 452 DLSNNSI 458 (517)
Q Consensus 452 ~l~~n~l 458 (517)
++++|++
T Consensus 339 ~l~~N~i 345 (347)
T 4fmz_A 339 DFANQVI 345 (347)
T ss_dssp SSSCC--
T ss_pred ehhhhcc
Confidence 6666665
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.2e-31 Score=251.22 Aligned_cols=307 Identities=24% Similarity=0.340 Sum_probs=212.1
Q ss_pred cCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCc
Q 042271 28 GESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMR 107 (517)
Q Consensus 28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 107 (517)
...+++|++|+++++.+..++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. + +.+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 4578999999999999988864 8999999999999999985444 8999999999999999984 4 4699999999
Q ss_pred EEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccc
Q 042271 108 ELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSE 187 (517)
Q Consensus 108 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~ 187 (517)
+|++++|.+++. +. +..+++|++|++++|......+ .+..+++|++|++++|.+..
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~-------------------- 169 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKD-------------------- 169 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCC--------------------
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCC--------------------
Confidence 999999999854 33 8899999999999997654333 48889999999999887310
Q ss_pred cccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCC
Q 042271 188 ICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS 267 (517)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (517)
.+ .+..+++|+.+++++|.+.+. +. +..+++|+.++++++.+.+.
T Consensus 170 -------------------------------~~-~~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 170 -------------------------------VT-PIANLTDLYSLSLNYNQIEDI-SP--LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp -------------------------------CG-GGGGCTTCSEEECTTSCCCCC-GG--GGGCTTCCEEECCSSCCCCC
T ss_pred -------------------------------ch-hhccCCCCCEEEccCCccccc-cc--ccCCCccceeecccCCCCCC
Confidence 01 134556677777777666532 22 23444555555554444332
Q ss_pred cccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHh
Q 042271 268 FWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAA 347 (517)
Q Consensus 268 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 347 (517)
.. +.. +++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+.
T Consensus 215 ~~--~~~-------------------------~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~ 262 (347)
T 4fmz_A 215 TP--VAN-------------------------MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN--AVK 262 (347)
T ss_dssp GG--GGG-------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGT
T ss_pred ch--hhc-------------------------CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch--hHh
Confidence 21 333 5555556665555553222 5556666666666665552 22 234
Q ss_pred hcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEE
Q 042271 348 RCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDI 427 (517)
Q Consensus 348 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 427 (517)
.+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..| +..+++|++|
T Consensus 263 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 338 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence 466666666666666543 345567777777777777766666677777777777777777775444 6677777777
Q ss_pred ECCCCccc
Q 042271 428 IMPNNNLE 435 (517)
Q Consensus 428 ~l~~~~~~ 435 (517)
++++|.+.
T Consensus 339 ~l~~N~i~ 346 (347)
T 4fmz_A 339 DFANQVIK 346 (347)
T ss_dssp SSSCC---
T ss_pred ehhhhccc
Confidence 77777664
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-31 Score=257.67 Aligned_cols=310 Identities=22% Similarity=0.236 Sum_probs=186.8
Q ss_pred CCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEE
Q 042271 30 SKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMREL 109 (517)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 109 (517)
.++++++|+++++.+..++...+..+++|++|++++|.+.+..+.++..+++|++|++++|.+.+..|..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34667777777777777776667777777777777777765556667777777777777777775555566777777777
Q ss_pred EccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccc
Q 042271 110 HIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEIC 189 (517)
Q Consensus 110 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~ 189 (517)
++++|.++...+..|..+++|++|++++|.+.+ +++..+..+++|++|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l------------------------ 177 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRL------------------------ 177 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCC------------------------
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcC------------------------
Confidence 777777764433445677777777777777654 3333566667777777766653
Q ss_pred cccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcc
Q 042271 190 AETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW 269 (517)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 269 (517)
.+. + ...+++|+.++++++.+..
T Consensus 178 --------------------------------------------------~~~-~---~~~l~~L~~L~l~~n~l~~--- 200 (390)
T 3o6n_A 178 --------------------------------------------------THV-D---LSLIPSLFHANVSYNLLST--- 200 (390)
T ss_dssp --------------------------------------------------SBC-C---GGGCTTCSEEECCSSCCSE---
T ss_pred --------------------------------------------------Ccc-c---cccccccceeecccccccc---
Confidence 111 0 1123344444444443322
Q ss_pred cccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhc
Q 042271 270 MPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARC 349 (517)
Q Consensus 270 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~ 349 (517)
+...+.|++|++++|.+. .++... +++|+.|++++|.+++. ..+..+++|++|++++|.+.+ ++...+..+
T Consensus 201 --~~~~~~L~~L~l~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l 271 (390)
T 3o6n_A 201 --LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-IMYHPFVKM 271 (390)
T ss_dssp --EECCSSCSEEECCSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-EESGGGTTC
T ss_pred --cCCCCcceEEECCCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC-cChhHcccc
Confidence 112235566666666554 222221 35677777777766643 456666777777777776663 333344456
Q ss_pred CCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEEC
Q 042271 350 FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIM 429 (517)
Q Consensus 350 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 429 (517)
++|+.|++++|.+++. +..+..+++|++|++++|.+. ..+..+..+++|+.|++++|++... + +..+++|+.|++
T Consensus 272 ~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred ccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 6666777766666542 223345666777777777665 3444556666777777777766532 2 455566666666
Q ss_pred CCCccc
Q 042271 430 PNNNLE 435 (517)
Q Consensus 430 ~~~~~~ 435 (517)
++|++.
T Consensus 347 ~~N~~~ 352 (390)
T 3o6n_A 347 SHNDWD 352 (390)
T ss_dssp CSSCEE
T ss_pred CCCCcc
Confidence 666654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-31 Score=257.94 Aligned_cols=310 Identities=21% Similarity=0.188 Sum_probs=217.1
Q ss_pred CCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCC
Q 042271 3 KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSL 82 (517)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 82 (517)
.++++|+|+++++ .+ +.++...+..+++|++|+++++.+..++...|+.+++|++|++++|.+.+..+..+.++++|
T Consensus 43 ~l~~l~~l~l~~~--~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNS--TM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESC--EE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCC--ch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 3589999999999 44 34555557899999999999999999988899999999999999999998888899999999
Q ss_pred cEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeeccc
Q 042271 83 QVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN 162 (517)
Q Consensus 83 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~ 162 (517)
++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.. + .+..+++|+++++++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEEECCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c---ccccccccceeeccc
Confidence 999999999994433446899999999999999998888889999999999999999865 2 367788999999998
Q ss_pred CCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCC
Q 042271 163 NHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGK 242 (517)
Q Consensus 163 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 242 (517)
|.+... ...+.++.++++++.+...
T Consensus 196 n~l~~~-------------------------------------------------------~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 196 NLLSTL-------------------------------------------------------AIPIAVEELDASHNSINVV 220 (390)
T ss_dssp SCCSEE-------------------------------------------------------ECCSSCSEEECCSSCCCEE
T ss_pred cccccc-------------------------------------------------------CCCCcceEEECCCCeeeec
Confidence 863110 0112345555555544422
Q ss_pred CChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhh
Q 042271 243 FPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA 322 (517)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 322 (517)
+. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++ ++..+.
T Consensus 221 -~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~ 292 (390)
T 3o6n_A 221 -RG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQ 292 (390)
T ss_dssp -EC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECCSSCCCE-EECSSS
T ss_pred -cc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc-cccCCEEECCCCcCcc-cCcccC
Confidence 11 1234566666666655443 34555566666666666665433444333 5666666666666653 333445
Q ss_pred cCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271 323 DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT 387 (517)
Q Consensus 323 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (517)
.+++|++|++++|.+. .++..+ ..+++|+.|++++|.+++. .+..+++|+.|++++|++.
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred CCCCCCEEECCCCcce-ecCccc-cccCcCCEEECCCCcccee---CchhhccCCEEEcCCCCcc
Confidence 5666666666666665 444433 3356666666666666543 2445566666666666654
No 39
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2e-34 Score=285.51 Aligned_cols=388 Identities=20% Similarity=0.142 Sum_probs=203.7
Q ss_pred CcceEEeccccccCCcchhh-hhhcccCcEEEecCCcccC----CccccccCCCCCcEEEccCCccCCCCCcchh-ccc-
Q 042271 32 PSLKFLSLINSSKNTILDQG-LRQLVHLQELYIGGYDLRG----SLPWCLANMTSLQVLYASSNELTGNISPGLC-ELV- 104 (517)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~- 104 (517)
+.|++|+++++.+....... +..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56677777766665544323 6677777777777777653 2355666777777888777776643333332 233
Q ss_pred ---cCcEEEccccccCC----cccccccCCCCCcEEeccCCccccccCC----CcccCCCCCceeecccCCCCCCCCCcc
Q 042271 105 ---LMRELHIDNNDLRG----SLPLCLANLTSLRVLDVSDNQLTQNISS----SPLMHLTSIEELILSNNHFFQSPISLE 173 (517)
Q Consensus 105 ---~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~ 173 (517)
+|++|++++|.+++ .++..+..+++|++|++++|.+.+.... ......++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS---- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH----
Confidence 58888888887763 3466777788888888888776532111 01122456777777766531100
Q ss_pred cccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhh----
Q 042271 174 PLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVE---- 249 (517)
Q Consensus 174 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~---- 249 (517)
...++..+..+++|++|++++|.+.+..+..+..
T Consensus 159 ------------------------------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 196 (461)
T 1z7x_W 159 ------------------------------------------CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196 (461)
T ss_dssp ------------------------------------------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHH
T ss_pred ------------------------------------------HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhc
Confidence 0012334445566666777666655433333322
Q ss_pred cccccceEeccCCccCCC----cccccccCCcccEEEccCCcccccCChh----hhhccCCCcEEEccCCcCCCC----C
Q 042271 250 NNANLERLLLADNSLFGS----FWMPIHSHQKLATLDVSNNFFRGHIPVE----IGTYLPGLMDLNLSRNAFNGS----I 317 (517)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~i~~~----~ 317 (517)
..++|++|++++|.+.+. ....+..+++|++|++++|.+++..... +...+++|++|++++|.+++. +
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 234666666666665543 2233445566666666666554221111 111245566666666655532 3
Q ss_pred chhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccc----cchh
Q 042271 318 PSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGE----ILES 393 (517)
Q Consensus 318 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~ 393 (517)
+..+..+++|++|++++|.+.+..+..+...+ ....++|++|++++|.+++. .+..
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETL--------------------LEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH--------------------TSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHh--------------------ccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 34444555566666665555432222222111 00123444444444444322 1233
Q ss_pred hhhcccCCeEEecCCCCCCccchhhcC-----CCCCcEEECCCCcccc----cccccccCCCCccEEEccCCccccCCCC
Q 042271 394 LSKCYLLEGLYLSDNHLTGEIPRWLGN-----LSALEDIIMPNNNLEG----PIPIEFCQLNSLKILDLSNNSIFRTLPS 464 (517)
Q Consensus 394 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 464 (517)
+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+.+ .++..+..+++|++|++++|++++....
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~ 416 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 416 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHH
Confidence 344455555555555554322222211 4456666666665553 3455555666666666666666443221
Q ss_pred CCC------cccccEEEccCCcCCccc
Q 042271 465 CFS------PASIEQLHLSKNKIEGRL 485 (517)
Q Consensus 465 ~~~------~~~L~~L~l~~n~~~~~~ 485 (517)
.+. ...|+.|.+.++.+....
T Consensus 417 ~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 417 QLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred HHHHHhccCCcchhheeecccccCHHH
Confidence 111 235777777776665443
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=5.2e-34 Score=282.43 Aligned_cols=379 Identities=22% Similarity=0.188 Sum_probs=247.1
Q ss_pred ccCcEEEecCCcccCCccc-cccCCCCCcEEEccCCccCCC----CCcchhccccCcEEEccccccCCccccccc-CCC-
Q 042271 56 VHLQELYIGGYDLRGSLPW-CLANMTSLQVLYASSNELTGN----ISPGLCELVLMRELHIDNNDLRGSLPLCLA-NLT- 128 (517)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~- 128 (517)
++|++|+++++.+...... .+..+++|++|++++|.+... ++..+..+++|++|++++|.+++..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4667777777766533322 256666777777777666532 233455556666666666666543332222 233
Q ss_pred ---CCcEEeccCCcccc----ccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCC
Q 042271 129 ---SLRVLDVSDNQLTQ----NISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTP 201 (517)
Q Consensus 129 ---~L~~L~L~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~ 201 (517)
+|++|++++|.+.+ .++. .+..+++|++|++++|.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~------------------------------------- 124 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNL------------------------------------- 124 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSB-------------------------------------
T ss_pred CCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCc-------------------------------------
Confidence 46666666666542 1122 34555555555555554
Q ss_pred cceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhh----hcccccceEeccCCccCCCc----ccccc
Q 042271 202 KFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLV----ENNANLERLLLADNSLFGSF----WMPIH 273 (517)
Q Consensus 202 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~~~ 273 (517)
+.+..+..+. ...++|++|++++|.+.+.. ...+.
T Consensus 125 -------------------------------------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 167 (461)
T 1z7x_W 125 -------------------------------------LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167 (461)
T ss_dssp -------------------------------------CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred -------------------------------------CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh
Confidence 2222111111 11234666666666554422 23345
Q ss_pred cCCcccEEEccCCcccccCChhhhh----ccCCCcEEEccCCcCCCC----CchhhhcCCCCcEEeccccccccccc---
Q 042271 274 SHQKLATLDVSNNFFRGHIPVEIGT----YLPGLMDLNLSRNAFNGS----IPSSFADMKMLERVDISYNQLTGEIP--- 342 (517)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~i~~~~~--- 342 (517)
.+++|++|++++|.+.+..+..+.. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+...
T Consensus 168 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 247 (461)
T 1z7x_W 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH
Confidence 5678888888888776433333332 245899999999988854 46677889999999999998874432
Q ss_pred -hhHHhhcCCCcEEEccCCccccc----ccccccCCCCCcEEEccCcccccccchhhhhc-----ccCCeEEecCCCCCC
Q 042271 343 -ERMAARCFSLEILALSNNSLQGH----IFSEKFNLTNLMTLQLDGNKFTGEILESLSKC-----YLLEGLYLSDNHLTG 412 (517)
Q Consensus 343 -~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~ 412 (517)
..++..+++|+.|++++|.+++. ....+..+++|++|++++|.+.+.....+... ++|++|++++|.+.+
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 23333578999999999988864 34456678999999999999876555555443 699999999999886
Q ss_pred c----cchhhcCCCCCcEEECCCCcccccccccccC-----CCCccEEEccCCcccc----CCCCCCC-cccccEEEccC
Q 042271 413 E----IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ-----LNSLKILDLSNNSIFR----TLPSCFS-PASIEQLHLSK 478 (517)
Q Consensus 413 ~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~~~~-~~~L~~L~l~~ 478 (517)
. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|++++ ..+..+. +++|++|++++
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 4 4667778899999999999987654444432 6799999999999875 3333322 79999999999
Q ss_pred CcCCccchhhhc-----CCCcccEEECCCCcCCCCC
Q 042271 479 NKIEGRLESIIH-----DSPHLVTLDLSCNSLHGSI 509 (517)
Q Consensus 479 n~~~~~~~~~l~-----~~~~L~~l~l~~n~~~~~~ 509 (517)
|.+++.....+. ....|+.|++.++.++...
T Consensus 408 N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred CCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence 999865333322 2357999999888876443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.1e-30 Score=263.80 Aligned_cols=310 Identities=21% Similarity=0.230 Sum_probs=189.8
Q ss_pred CCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEE
Q 042271 31 KPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELH 110 (517)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 110 (517)
++.++.++++++.+..++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45566666666666666665666666666666666666655555666666666666666666655555566666666666
Q ss_pred ccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCccccccccccccc
Q 042271 111 IDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICA 190 (517)
Q Consensus 111 L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 190 (517)
+++|.+++..+..|..+++|++|++++|.+.+ +++..+..+++|++|++++|.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l------------------------- 183 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRL------------------------- 183 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCC-------------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCC-------------------------
Confidence 66666664444445666666666666666654 3333566666666666666552
Q ss_pred ccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCccc
Q 042271 191 ETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWM 270 (517)
Q Consensus 191 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (517)
.+. + ...+++|+.|++++|.+.+
T Consensus 184 -------------------------------------------------~~~-~---~~~l~~L~~L~l~~n~l~~---- 206 (597)
T 3oja_B 184 -------------------------------------------------THV-D---LSLIPSLFHANVSYNLLST---- 206 (597)
T ss_dssp -------------------------------------------------SBC-C---GGGCTTCSEEECCSSCCSE----
T ss_pred -------------------------------------------------CCc-C---hhhhhhhhhhhcccCcccc----
Confidence 211 1 1223444444444443322
Q ss_pred ccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcC
Q 042271 271 PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCF 350 (517)
Q Consensus 271 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~ 350 (517)
+...+.|+.|++++|.+. .++... .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| ..+..++
T Consensus 207 -l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~ 278 (597)
T 3oja_B 207 -LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQ 278 (597)
T ss_dssp -EECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES-GGGTTCS
T ss_pred -ccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH-HHhcCcc
Confidence 122235566666666554 222221 35677777777776642 556677777777777777763333 3445577
Q ss_pred CCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECC
Q 042271 351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP 430 (517)
Q Consensus 351 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 430 (517)
+|+.|++++|.+++. +..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+.+. + +..+++|+.|+++
T Consensus 279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEee
Confidence 777777777776653 334456777888888887776 4555667778888888888877643 2 5666777888888
Q ss_pred CCcccc
Q 042271 431 NNNLEG 436 (517)
Q Consensus 431 ~~~~~~ 436 (517)
+|.+..
T Consensus 354 ~N~~~~ 359 (597)
T 3oja_B 354 HNDWDC 359 (597)
T ss_dssp SSCEEH
T ss_pred CCCCCC
Confidence 777753
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.6e-30 Score=264.53 Aligned_cols=310 Identities=21% Similarity=0.190 Sum_probs=225.5
Q ss_pred CCCcCceeeCCCccccccccchhhccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCC
Q 042271 3 KFKNLEHLDMGEVQVDVNTSFLQIVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSL 82 (517)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 82 (517)
.+++++.++++++ .+ +.++...+..+++|++|+++++.+..++...|+.+++|++|++++|.+.+..|..|.++++|
T Consensus 49 ~l~~l~~l~l~~~--~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNS--TM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSC--EE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCC--CC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 3578899999999 44 34555558899999999999999999988899999999999999999998888889999999
Q ss_pred cEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeeccc
Q 042271 83 QVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSN 162 (517)
Q Consensus 83 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~ 162 (517)
++|++++|.+....+..++.+++|++|++++|.+++..|..|..+++|++|++++|.+.+ + .+..+++|++|++++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~---~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C---CGGGCTTCSEEECCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c---Chhhhhhhhhhhccc
Confidence 999999999995444457999999999999999998888899999999999999999865 2 366788999999998
Q ss_pred CCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCC
Q 042271 163 NHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGK 242 (517)
Q Consensus 163 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 242 (517)
|.+.. +.....|+.+++++|.+...
T Consensus 202 n~l~~-------------------------------------------------------l~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 202 NLLST-------------------------------------------------------LAIPIAVEELDASHNSINVV 226 (597)
T ss_dssp SCCSE-------------------------------------------------------EECCTTCSEEECCSSCCCEE
T ss_pred Ccccc-------------------------------------------------------ccCCchhheeeccCCccccc
Confidence 86311 01112344555555544421
Q ss_pred CChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhh
Q 042271 243 FPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA 322 (517)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 322 (517)
.+. ..++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+++ ++..+.
T Consensus 227 ~~~----~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-l~~~~~ 298 (597)
T 3oja_B 227 RGP----VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQ 298 (597)
T ss_dssp ECS----CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECTTSCCCE-EECSSS
T ss_pred ccc----cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcC-ccCCCEEECCCCCCCC-CCcccc
Confidence 111 124566666666665543 44556666777777777666444544444 6677777777776663 344455
Q ss_pred cCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271 323 DMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT 387 (517)
Q Consensus 323 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (517)
.+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.+. .+..+++|+.|++++|++.
T Consensus 299 ~l~~L~~L~Ls~N~l~-~i~~~~-~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred cCCCCcEEECCCCCCC-ccCccc-ccCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCC
Confidence 5677777777777766 555444 3467777777777776543 2455677777777777764
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.2e-31 Score=272.16 Aligned_cols=421 Identities=14% Similarity=0.074 Sum_probs=214.5
Q ss_pred CCCcCceeeCCCcccccc--cc-----------chhhccCCCCcceEEeccccccCCcchhhhhh-ccc-CcEEEecCCc
Q 042271 3 KFKNLEHLDMGEVQVDVN--TS-----------FLQIVGESKPSLKFLSLINSSKNTILDQGLRQ-LVH-LQELYIGGYD 67 (517)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~--~~-----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~ 67 (517)
++++|++|++++++ .+. +. ........++.|++|+++++.+.......+.. ++. |++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 71 RFPNLRSLKLKGKP-RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HCTTCSEEEEECSC-GGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred hCCCCeEEEecCCc-chhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 46778888887752 111 00 11111236778888888876655443334544 334 8888887775
Q ss_pred c-cC-CccccccCCCCCcEEEccCCccCCCCC----cchhccccCcEEEccccccCC----cccccccCCCCCcEEeccC
Q 042271 68 L-RG-SLPWCLANMTSLQVLYASSNELTGNIS----PGLCELVLMRELHIDNNDLRG----SLPLCLANLTSLRVLDVSD 137 (517)
Q Consensus 68 ~-~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~ 137 (517)
. .. .++.....+++|++|++++|.+.+... .....+++|++|++++|.+++ .++..+.++++|++|++++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 2 11 122333467788888888887654422 234567788888888877752 3344456778888888888
Q ss_pred CccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCC
Q 042271 138 NQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGG 217 (517)
Q Consensus 138 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 217 (517)
|.+.+ ++. .+..+++|++|+++........ .
T Consensus 230 ~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~-----------------------------------------------~ 260 (592)
T 3ogk_B 230 FEILE-LVG-FFKAAANLEEFCGGSLNEDIGM-----------------------------------------------P 260 (592)
T ss_dssp CBGGG-GHH-HHHHCTTCCEEEECBCCCCTTC-----------------------------------------------T
T ss_pred ccHHH-HHH-HHhhhhHHHhhcccccccccch-----------------------------------------------H
Confidence 77654 333 5667778888877653211000 0
Q ss_pred CccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcc-cccccCCcccEEEccCCcccccCChhh
Q 042271 218 TFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW-MPIHSHQKLATLDVSNNFFRGHIPVEI 296 (517)
Q Consensus 218 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 296 (517)
..+..+..+++|+.+.+.+.... .++. ++..+++|++|++++|.+.+... ..+..+++|++|+++ +.+.+.....+
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~ 337 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL 337 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred HHHHHhhccccccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH
Confidence 11112222334444444332111 2222 12344555555555554332211 123445555555555 22222222233
Q ss_pred hhccCCCcEEEccC-----------CcCCCC-CchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc----CC
Q 042271 297 GTYLPGLMDLNLSR-----------NAFNGS-IPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS----NN 360 (517)
Q Consensus 297 ~~~~~~L~~L~l~~-----------~~i~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~----~n 360 (517)
...+++|++|++++ +.+++. .......+++|++|+++.+.+++.....+...+++|+.|+++ .+
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 33355666666662 233321 111233456666666655555544444444446666666664 33
Q ss_pred ccccc-----ccccccCCCCCcEEEccCcc--cccccchhhhh-cccCCeEEecCCCCCC-ccchhhcCCCCCcEEECCC
Q 042271 361 SLQGH-----IFSEKFNLTNLMTLQLDGNK--FTGEILESLSK-CYLLEGLYLSDNHLTG-EIPRWLGNLSALEDIIMPN 431 (517)
Q Consensus 361 ~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~-~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~ 431 (517)
.+++. ....+..+++|+.|++++|. +++.....+.. +++|++|++++|++.+ .++..+.++++|++|++++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 34332 11223446666666665433 33333333332 5666666666666654 2334445666666666666
Q ss_pred Cccccc-ccccccCCCCccEEEccCCccccCCCCCCC--cccccEEEc
Q 042271 432 NNLEGP-IPIEFCQLNSLKILDLSNNSIFRTLPSCFS--PASIEQLHL 476 (517)
Q Consensus 432 ~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~L~~L~l 476 (517)
|.+.+. .+..+..+++|++|++++|++++.....+. ++.+....+
T Consensus 498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp CCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred CCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEe
Confidence 665432 222334566666666666666554433332 344444433
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.3e-28 Score=230.31 Aligned_cols=289 Identities=22% Similarity=0.186 Sum_probs=235.8
Q ss_pred eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271 204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV 283 (517)
Q Consensus 204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (517)
+++.+++.++... .+|..+ .+.++.++++++.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhh-hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5666666665543 334333 257899999999988554434 478899999999999998877788899999999999
Q ss_pred cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccccc-ccchhHHhhcCCCcEEEccCCcc
Q 042271 284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG-EIPERMAARCFSLEILALSNNSL 362 (517)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~n~~ 362 (517)
++|.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.. ......+..+++|+.|++++|.+
T Consensus 108 s~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 999987 667655 3689999999999998778889999999999999998863 24445667799999999999998
Q ss_pred cccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccc
Q 042271 363 QGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF 442 (517)
Q Consensus 363 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 442 (517)
+.... .+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+
T Consensus 184 ~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 184 TTIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CSCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred ccCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 75432 22 389999999999998777888999999999999999998766778999999999999999998 678888
Q ss_pred cCCCCccEEEccCCccccCCCCCCC-------cccccEEEccCCcCCc--cchhhhcCCCcccEEECCCCc
Q 042271 443 CQLNSLKILDLSNNSIFRTLPSCFS-------PASIEQLHLSKNKIEG--RLESIIHDSPHLVTLDLSCNS 504 (517)
Q Consensus 443 ~~~~~L~~L~l~~n~l~~~~~~~~~-------~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~l~l~~n~ 504 (517)
..+++|++|++++|++++..+..+. ..+++.|++++|.+.. +.+..|..+++++.+++++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999999999999887777664 3788999999999864 567889999999999999985
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=5.1e-31 Score=269.50 Aligned_cols=410 Identities=14% Similarity=0.091 Sum_probs=215.8
Q ss_pred chhhhhhcccCcEEEecCCccc---CCcccc------------ccCCCCCcEEEccCCccCCCCCcchhc-ccc-CcEEE
Q 042271 48 LDQGLRQLVHLQELYIGGYDLR---GSLPWC------------LANMTSLQVLYASSNELTGNISPGLCE-LVL-MRELH 110 (517)
Q Consensus 48 ~~~~l~~l~~L~~L~l~~~~~~---~~~~~~------------l~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~ 110 (517)
+...+..+++|++|+++++... +..|.. ...+++|++|++++|.+++..+..+.. ++. |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 3446677788888888765421 111111 125777888888777666544444554 334 88888
Q ss_pred ccccc-cCC-cccccccCCCCCcEEeccCCccccccCC---CcccCCCCCceeecccCCCCCCCCCcccccCcccccccc
Q 042271 111 IDNND-LRG-SLPLCLANLTSLRVLDVSDNQLTQNISS---SPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFD 185 (517)
Q Consensus 111 L~~~~-~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 185 (517)
+++|. ++. .++.....+++|++|++++|.+.+.... .....+++|++|++++|.+... .
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~--~-------------- 208 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI--S-------------- 208 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC--C--------------
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc--C--------------
Confidence 87775 221 1222234677788888887776432100 0234567777777776653100 0
Q ss_pred cccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccC
Q 042271 186 SEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLF 265 (517)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (517)
...++..+..+++|+.|++.++.+.+ ++. .+..+++|++|.++.....
T Consensus 209 ------------------------------~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 209 ------------------------------PKDLETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNED 256 (592)
T ss_dssp ------------------------------HHHHHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCC
T ss_pred ------------------------------HHHHHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccc
Confidence 01223334445566666666655543 332 2345566666666532211
Q ss_pred ---CCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCc-hhhhcCCCCcEEecccccccccc
Q 042271 266 ---GSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIP-SSFADMKMLERVDISYNQLTGEI 341 (517)
Q Consensus 266 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~i~~~~ 341 (517)
......+..+++|+.++++++... .++..... +++|++|++++|.+++... ..+..+++|++|+++ +.+.+..
T Consensus 257 ~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~-~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~ 333 (592)
T 3ogk_B 257 IGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPF-AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRG 333 (592)
T ss_dssp TTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGG-GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHH
T ss_pred cchHHHHHHhhccccccccCccccchh-HHHHHHhh-cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHH
Confidence 122234455566666666654322 33333322 5666666666666543222 234566666666666 3333333
Q ss_pred chhHHhhcCCCcEEEccC-----------Cccccccccc-ccCCCCCcEEEccCcccccccchhhhh-cccCCeEEec--
Q 042271 342 PERMAARCFSLEILALSN-----------NSLQGHIFSE-KFNLTNLMTLQLDGNKFTGEILESLSK-CYLLEGLYLS-- 406 (517)
Q Consensus 342 ~~~~~~~~~~L~~L~l~~-----------n~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~-- 406 (517)
...+...+++|++|++++ +.+++..... ...+++|++|++..+.+++.....+.. +++|+.|+++
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 344445566666666662 3343322111 234666677666666665544444443 6666666664
Q ss_pred --CCCCCCc-----cchhhcCCCCCcEEECCCCc--ccccccccc-cCCCCccEEEccCCccccCCCC-C-CCcccccEE
Q 042271 407 --DNHLTGE-----IPRWLGNLSALEDIIMPNNN--LEGPIPIEF-CQLNSLKILDLSNNSIFRTLPS-C-FSPASIEQL 474 (517)
Q Consensus 407 --~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~-~~~~~L~~L 474 (517)
.+.+++. ++..+.++++|++|+++.|. +.+.....+ ..+++|++|++++|++++.... . ..+++|++|
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 3444432 33335556667777665443 333222222 2356677777766666442211 1 125667777
Q ss_pred EccCCcCCcc-chhhhcCCCcccEEECCCCcCCCC
Q 042271 475 HLSKNKIEGR-LESIIHDSPHLVTLDLSCNSLHGS 508 (517)
Q Consensus 475 ~l~~n~~~~~-~~~~l~~~~~L~~l~l~~n~~~~~ 508 (517)
++++|.+++. ++.....+++|++|++++|++++.
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 7777666543 333445566777777777766643
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=6.9e-30 Score=238.14 Aligned_cols=249 Identities=23% Similarity=0.303 Sum_probs=167.8
Q ss_pred cccceEeccCCccCC--CcccccccCCcccEEEccC-CcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCc
Q 042271 252 ANLERLLLADNSLFG--SFWMPIHSHQKLATLDVSN-NFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 328 (517)
Q Consensus 252 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 328 (517)
.++++|+++++.+.+ ..+..+..+++|++|++++ +.+.+.+|..+.. +++|++|++++|.+++.++..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 345566666666555 4455566666666666663 6665566665554 66777777777776666666677777777
Q ss_pred EEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCC-CCcEEEccCcccccccchhhhhcccCCeEEecC
Q 042271 329 RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLT-NLMTLQLDGNKFTGEILESLSKCYLLEGLYLSD 407 (517)
Q Consensus 329 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 407 (517)
+|++++|.+.+.+|.. +..+++|++|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+. |+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 7777777766545443 33466777777777776655666666666 777777777777666666666665 77777777
Q ss_pred CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccch
Q 042271 408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLE 486 (517)
Q Consensus 408 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~ 486 (517)
|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|++++..+..+. +++|++|++++|.+++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 777666667777777777777777777654443 66677777777777777666665554 6777777777777776666
Q ss_pred hhhcCCCcccEEECCCCcC
Q 042271 487 SIIHDSPHLVTLDLSCNSL 505 (517)
Q Consensus 487 ~~l~~~~~L~~l~l~~n~~ 505 (517)
.. ..+++|+.+++++|+.
T Consensus 286 ~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSE
T ss_pred CC-ccccccChHHhcCCCC
Confidence 54 6677788888888873
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2e-29 Score=235.07 Aligned_cols=237 Identities=30% Similarity=0.432 Sum_probs=216.4
Q ss_pred CcccEEEccCCcccc--cCChhhhhccCCCcEEEccC-CcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCC
Q 042271 276 QKLATLDVSNNFFRG--HIPVEIGTYLPGLMDLNLSR-NAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSL 352 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L 352 (517)
.+++.|+++++.+.+ .+|..+.. +++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|.. +..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCC
Confidence 589999999999987 78887776 99999999995 8898889999999999999999999998677654 4569999
Q ss_pred cEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcc-cCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCY-LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431 (517)
Q Consensus 353 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 431 (517)
++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..|..+..+. |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 9999999999988888899999999999999999878888999988 999999999999888888898887 99999999
Q ss_pred CcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCc
Q 042271 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN 511 (517)
Q Consensus 432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~ 511 (517)
|.+.+..+..+..+++|+.|++++|++++..+....+++|++|++++|.+++..|..|..+++|+.|++++|++++.+|.
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99998889999999999999999999987777755689999999999999989999999999999999999999999987
Q ss_pred cccCC
Q 042271 512 QIGRL 516 (517)
Q Consensus 512 ~~~~~ 516 (517)
. +++
T Consensus 287 ~-~~l 290 (313)
T 1ogq_A 287 G-GNL 290 (313)
T ss_dssp S-TTG
T ss_pred C-ccc
Confidence 6 443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.3e-28 Score=229.31 Aligned_cols=296 Identities=18% Similarity=0.217 Sum_probs=147.1
Q ss_pred ccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEec
Q 042271 56 VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135 (517)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 135 (517)
.++++++++++.+. .+|..+. +.+++|++++|.+++..+..++++++|++|++++|.+++..|.+|..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36666777666665 3443332 45666666666666444445666666666666666666555666666666666666
Q ss_pred cCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeecccccc
Q 042271 136 SDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYID 215 (517)
Q Consensus 136 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 215 (517)
++|.+.. ++. .+. ++|++|++++|.
T Consensus 108 s~n~l~~-l~~-~~~--~~L~~L~l~~n~--------------------------------------------------- 132 (330)
T 1xku_A 108 SKNQLKE-LPE-KMP--KTLQELRVHENE--------------------------------------------------- 132 (330)
T ss_dssp CSSCCSB-CCS-SCC--TTCCEEECCSSC---------------------------------------------------
T ss_pred CCCcCCc-cCh-hhc--ccccEEECCCCc---------------------------------------------------
Confidence 6666542 332 111 345555554443
Q ss_pred CCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCC--CcccccccCCcccEEEccCCcccccCC
Q 042271 216 GGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFG--SFWMPIHSHQKLATLDVSNNFFRGHIP 293 (517)
Q Consensus 216 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~ 293 (517)
+.+ ++...+..+++|+.|++++|.+.. .....+..+++|+.|++++|.++ .+|
T Consensus 133 -----------------------l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~ 187 (330)
T 1xku_A 133 -----------------------ITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP 187 (330)
T ss_dssp -----------------------CCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCC
T ss_pred -----------------------ccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCC
Confidence 221 122222344455555555544422 22334455556666666666554 344
Q ss_pred hhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCC
Q 042271 294 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNL 373 (517)
Q Consensus 294 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 373 (517)
... .++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.++ .++..+..+
T Consensus 188 ~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 188 QGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp SSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred ccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 333 246666666666666555555666666666666666655 233333344555555555555544 222334444
Q ss_pred CCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccc--cccccccCCCCccEE
Q 042271 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG--PIPIEFCQLNSLKIL 451 (517)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L 451 (517)
++|++|++++|.++......+.... .....+.++.+++.+|.+.. ..|..|..+++++.+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred CCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeEE
Confidence 4444444444444433222222110 00012445555555555432 334455556666666
Q ss_pred EccCCc
Q 042271 452 DLSNNS 457 (517)
Q Consensus 452 ~l~~n~ 457 (517)
++++|+
T Consensus 325 ~L~~N~ 330 (330)
T 1xku_A 325 QLGNYK 330 (330)
T ss_dssp EC----
T ss_pred EecccC
Confidence 666553
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.4e-28 Score=231.95 Aligned_cols=245 Identities=20% Similarity=0.211 Sum_probs=137.6
Q ss_pred cCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEecc
Q 042271 57 HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVS 136 (517)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 136 (517)
++++++++++.+. .+|..+ .++|++|++++|.+.+..+..++.+++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6777777777766 444443 2567777777777765555567777777777777777776666677777777777777
Q ss_pred CCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccC
Q 042271 137 DNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDG 216 (517)
Q Consensus 137 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 216 (517)
+|.+.. ++. .+. ++|++|++++|.+ .
T Consensus 111 ~n~l~~-l~~-~~~--~~L~~L~l~~n~i--------------------------------------------------~ 136 (332)
T 2ft3_A 111 KNHLVE-IPP-NLP--SSLVELRIHDNRI--------------------------------------------------R 136 (332)
T ss_dssp SSCCCS-CCS-SCC--TTCCEEECCSSCC--------------------------------------------------C
T ss_pred CCcCCc-cCc-ccc--ccCCEEECCCCcc--------------------------------------------------C
Confidence 776642 443 122 5566666665542 1
Q ss_pred CCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhh
Q 042271 217 GTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEI 296 (517)
Q Consensus 217 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 296 (517)
...+..+..+++|+.++++++.+.. .+..+..+..+ +|+.|++++|.++ .+|..+
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~ 191 (332)
T 2ft3_A 137 KVPKGVFSGLRNMNCIEMGGNPLEN-----------------------SGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL 191 (332)
T ss_dssp CCCSGGGSSCSSCCEEECCSCCCBG-----------------------GGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS
T ss_pred ccCHhHhCCCccCCEEECCCCcccc-----------------------CCCCcccccCC-ccCEEECcCCCCC-ccCccc
Confidence 1112223344455555555544431 01222223333 5556666666554 344433
Q ss_pred hhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCC
Q 042271 297 GTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNL 376 (517)
Q Consensus 297 ~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 376 (517)
.++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.++ .++..+..+++|
T Consensus 192 ---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 192 ---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp ---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred ---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 246677777777666555566666666777777766666 333333444555666666555554 222334445555
Q ss_pred cEEEccCccccc
Q 042271 377 MTLQLDGNKFTG 388 (517)
Q Consensus 377 ~~L~l~~~~~~~ 388 (517)
+.|++++|.++.
T Consensus 267 ~~L~l~~N~l~~ 278 (332)
T 2ft3_A 267 QVVYLHTNNITK 278 (332)
T ss_dssp CEEECCSSCCCB
T ss_pred CEEECCCCCCCc
Confidence 555555555543
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.2e-28 Score=232.54 Aligned_cols=288 Identities=20% Similarity=0.220 Sum_probs=233.5
Q ss_pred eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271 204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV 283 (517)
Q Consensus 204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (517)
+++.+++.++... .+|..+ .++++.|+++++.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDD-FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhH-hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5666777666554 344443 368899999999888554444 478899999999999988777778899999999999
Q ss_pred cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccccc-ccchhHHhhcCCCcEEEccCCcc
Q 042271 284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG-EIPERMAARCFSLEILALSNNSL 362 (517)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~n~~ 362 (517)
++|.++ .+|...+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ......+..+ +|+.|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999987 6776553 799999999999987777778999999999999998863 2334444445 899999999998
Q ss_pred cccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccc
Q 042271 363 QGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF 442 (517)
Q Consensus 363 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 442 (517)
++... .+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++. .+|..+
T Consensus 185 ~~l~~-~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TGIPK-DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SSCCS-SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred CccCc-cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 86432 22 378999999999998777788999999999999999999777778999999999999999998 677888
Q ss_pred cCCCCccEEEccCCccccCCCCCCC-------cccccEEEccCCcCC--ccchhhhcCCCcccEEECCCCc
Q 042271 443 CQLNSLKILDLSNNSIFRTLPSCFS-------PASIEQLHLSKNKIE--GRLESIIHDSPHLVTLDLSCNS 504 (517)
Q Consensus 443 ~~~~~L~~L~l~~n~l~~~~~~~~~-------~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~l~l~~n~ 504 (517)
..+++|++|++++|++++..+..+. ..+|+.|++++|.+. ...+..|..+++|+.+++++|.
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9999999999999999887776664 367899999999987 6778899999999999999885
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=2.4e-30 Score=264.74 Aligned_cols=207 Identities=15% Similarity=0.073 Sum_probs=90.8
Q ss_pred cccccceEeccCCccCCCccc-ccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccC---------CcCCCCCch
Q 042271 250 NNANLERLLLADNSLFGSFWM-PIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSR---------NAFNGSIPS 319 (517)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~i~~~~~~ 319 (517)
.+++|++|++++|.+.+.... .+..+++|++|++++| +.+.....+...+++|++|++.+ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 455666666666654322111 1335556666666655 32222222223355666666532 122211111
Q ss_pred hh-hcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc--C----Cccccc-----ccccccCCCCCcEEEccCcccc
Q 042271 320 SF-ADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS--N----NSLQGH-----IFSEKFNLTNLMTLQLDGNKFT 387 (517)
Q Consensus 320 ~~-~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~--~----n~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 387 (517)
.+ ..+++|++|.+..+.+++.....+...+++|+.|+++ + +.+++. ....+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 22 2355566665555555543333333345556666555 2 222211 011133445555555544 333
Q ss_pred cccchhhhh-cccCCeEEecCCCCCCccchhh-cCCCCCcEEECCCCcccccccc-cccCCCCccEEEccCCcc
Q 042271 388 GEILESLSK-CYLLEGLYLSDNHLTGEIPRWL-GNLSALEDIIMPNNNLEGPIPI-EFCQLNSLKILDLSNNSI 458 (517)
Q Consensus 388 ~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l 458 (517)
+.....+.. +++|+.|++++|.+++..+..+ .++++|+.|++++|.+.+.... .+..+++|++|++++|++
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 333333333 4555555555555543322222 3455555555555555322211 222345555555555544
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.9e-29 Score=258.02 Aligned_cols=239 Identities=15% Similarity=0.077 Sum_probs=166.6
Q ss_pred CccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccc-cccCCcccEEEccC---------Cc
Q 042271 218 TFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMP-IHSHQKLATLDVSN---------NF 287 (517)
Q Consensus 218 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~---------~~ 287 (517)
.++..+..+++|++|++++|.+.+.....+...+++|++|+++++ +.+..... ...+++|++|++++ +.
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 445555678899999999988765544555567899999999987 33222222 33578999999843 34
Q ss_pred ccccCChhhhhccCCCcEEEccCCcCCCCCchhhh-cCCCCcEEecc--c----ccccc----ccchhHHhhcCCCcEEE
Q 042271 288 FRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA-DMKMLERVDIS--Y----NQLTG----EIPERMAARCFSLEILA 356 (517)
Q Consensus 288 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~--~----~~i~~----~~~~~~~~~~~~L~~L~ 356 (517)
+++.....+...+++|+.|.+..+.+++.....+. .+++|++|+++ + +.+++ ......+..+++|+.|+
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 44333334444588999998888888755445554 58999999998 3 44441 11123356789999999
Q ss_pred ccCCcccccccccccC-CCCCcEEEccCcccccccchhh-hhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCc
Q 042271 357 LSNNSLQGHIFSEKFN-LTNLMTLQLDGNKFTGEILESL-SKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNN 433 (517)
Q Consensus 357 l~~n~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 433 (517)
+++ .+++.....+.. +++|++|++++|.+++.....+ ..+++|++|++++|.+++... .....+++|+.|++++|+
T Consensus 439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 987 666554445544 8999999999999876555555 678999999999999864333 345568999999999998
Q ss_pred ccccccccc-cCCCCccEEEccCCcc
Q 042271 434 LEGPIPIEF-CQLNSLKILDLSNNSI 458 (517)
Q Consensus 434 ~~~~~~~~~-~~~~~L~~L~l~~n~l 458 (517)
+.......+ ..+|+|+...+..+..
T Consensus 518 ~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 518 VSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp CBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 854333334 5678888777776543
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.4e-27 Score=220.96 Aligned_cols=281 Identities=21% Similarity=0.185 Sum_probs=204.4
Q ss_pred CEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCccccc--CChhhhhccCCCcEEE
Q 042271 230 KNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH--IPVEIGTYLPGLMDLN 307 (517)
Q Consensus 230 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~ 307 (517)
+.++.++..+. .+|..+ .+++++|+++++.+.......+..+++|++|++++|.++.. .+..... +++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEE
Confidence 46777777666 455432 36788888888888766655677888888888888877521 2344444 78888888
Q ss_pred ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT 387 (517)
Q Consensus 308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (517)
+++|.+. .++..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 8888877 455567788888888888888874333355667888888888888887776677778888888888888876
Q ss_pred c-ccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC
Q 042271 388 G-EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF 466 (517)
Q Consensus 388 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 466 (517)
+ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 5 456777788888888888888886667778888888888888888876666677788888888888888877766655
Q ss_pred C-c-ccccEEEccCCcCCcc--chhhhcCCCcccEEECCCCcCCCCCCccccCC
Q 042271 467 S-P-ASIEQLHLSKNKIEGR--LESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516 (517)
Q Consensus 467 ~-~-~~L~~L~l~~n~~~~~--~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~ 516 (517)
. . ++|++|++++|.++.. ..+...-+...+.+....+.+.+..|..+...
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 5 3 5888888888887643 11222223345555666777777777776543
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.9e-27 Score=214.67 Aligned_cols=227 Identities=22% Similarity=0.184 Sum_probs=159.3
Q ss_pred cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271 279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS 358 (517)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 358 (517)
++++.+++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .+....+..+++|+.|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 45566666665 555433 356777777777776655566777777777777777766 3433445557777777777
Q ss_pred CCc-ccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccc
Q 042271 359 NNS-LQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGP 437 (517)
Q Consensus 359 ~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 437 (517)
+|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 775 5555556677777777777777777766666677777777777777777755556677777777777777777755
Q ss_pred ccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 438 IPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 438 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
.+..+..+++|++|++++|++++..+..+. +++|++|++++|.+++..+..|..+++|+.|++++|++++.++
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 555677777888888888777776555554 6778888888888777777777778888888888887776554
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.6e-27 Score=220.79 Aligned_cols=249 Identities=21% Similarity=0.221 Sum_probs=158.8
Q ss_pred ceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCC--CchhhhcCCCCcEEec
Q 042271 255 ERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGS--IPSSFADMKMLERVDI 332 (517)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l 332 (517)
+.++++++.++.... ...+++++|++++|.++ .++...+..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~---~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT---GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCS---CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCC---CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 455555555543322 11246777777777766 55555444467777777777766522 2455556677777777
Q ss_pred cccccccccchhHHhhcCCCcEEEccCCccccccc-ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271 333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF-SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411 (517)
Q Consensus 333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 411 (517)
++|.+. .++.. +..+++|+.|++++|.+++... ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 777666 44433 3446677777777776665443 45666777777777777766555666666777777777777665
Q ss_pred C-ccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhh
Q 042271 412 G-EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESII 489 (517)
Q Consensus 412 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l 489 (517)
+ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+. +++|++|++++|.+++..+..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 4 3566667777777777777777665566666777777777777776655443333 5677777777777776666666
Q ss_pred cCCC-cccEEECCCCcCCCCC
Q 042271 490 HDSP-HLVTLDLSCNSLHGSI 509 (517)
Q Consensus 490 ~~~~-~L~~l~l~~n~~~~~~ 509 (517)
..++ +|++|++++|++++.+
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSG
T ss_pred HhhhccCCEEEccCCCeeccc
Confidence 6663 6777777777776554
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=227.56 Aligned_cols=279 Identities=18% Similarity=0.129 Sum_probs=198.6
Q ss_pred cCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcE
Q 042271 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMD 305 (517)
Q Consensus 226 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 305 (517)
|+.....+.+++.+. .+|..+ .+++++|+++++.+.+.....+..+++|++|++++|.+++..+..+.. +++|++
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCE
Confidence 333444566666666 455433 357888888888877666556778888888888888877433333433 778888
Q ss_pred EEccCCcCCCCCchhhhcCCCCcEEeccccccccccch-hHHhhcCCCcEEEccCCc-ccccccccccCCCCCcEEEccC
Q 042271 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPE-RMAARCFSLEILALSNNS-LQGHIFSEKFNLTNLMTLQLDG 383 (517)
Q Consensus 306 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~ 383 (517)
|++++|.+++..+..+..+++|++|++++|.+. .++. ..+..+++|+.|++++|. +.......+..+++|++|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 888888887655556788888888888888877 5555 556678888888888873 5555556677788888888888
Q ss_pred cccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccc---cCCCCccEEEccCCcccc
Q 042271 384 NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF---CQLNSLKILDLSNNSIFR 460 (517)
Q Consensus 384 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~ 460 (517)
|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+ .....++.++++++.+++
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 88877667778888888888888888764333445567888888888888875443322 235677788888777654
Q ss_pred CC----CC-CCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 461 TL----PS-CFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 461 ~~----~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
.. +. ...+++|++|++++|.++..++..|..+++|++|++++|++++.+|
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 21 11 1226788899999998887666677888999999999999888775
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=226.60 Aligned_cols=230 Identities=23% Similarity=0.201 Sum_probs=143.7
Q ss_pred CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL 355 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 355 (517)
++++.|++++|.+. .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|
T Consensus 64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence 34555555555554 222222223555555666555555444555555666666666666555 4444445555666666
Q ss_pred EccCCcccccccccccCCCCCcEEEccCc-ccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcc
Q 042271 356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGN-KFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL 434 (517)
Q Consensus 356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 434 (517)
++++|.+.......+..+++|++|++++| .+.......+.++++|+.|++++|.+. .+| .+..+++|+.|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 66666665555555566666666666653 333333445666677777777777666 334 356677777777777777
Q ss_pred cccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCC
Q 042271 435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSI 509 (517)
Q Consensus 435 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~ 509 (517)
.+..+..|.++++|++|++++|++++..+..+. +++|++|++++|.++...+..|..+++|+.|+|++|++.+.+
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 766667777777777777777777666666555 677777777777777777777777777888888887776654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.1e-26 Score=226.50 Aligned_cols=231 Identities=23% Similarity=0.214 Sum_probs=159.9
Q ss_pred CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL 355 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 355 (517)
++++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence 4566666666666533233333 3666666666666666555566666677777777777666 5555555566677777
Q ss_pred EccCCcccccccccccCCCCCcEEEccC-cccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcc
Q 042271 356 ALSNNSLQGHIFSEKFNLTNLMTLQLDG-NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL 434 (517)
Q Consensus 356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 434 (517)
++++|.+.......+..+++|+.|++++ +.+.......+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcC
Confidence 7777776655555666777777777776 33443444456777777777777777763 33 366777888888888888
Q ss_pred cccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 435 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
.+..+..|.++++|++|++++|++++..+..+. +++|++|++++|.+++..+..|..+++|++|++++|++.+.+.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 777777788888888888888888777666655 6788888888888887777778888888888888888876653
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.2e-26 Score=213.78 Aligned_cols=268 Identities=21% Similarity=0.191 Sum_probs=189.6
Q ss_pred CEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEcc
Q 042271 230 KNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLS 309 (517)
Q Consensus 230 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 309 (517)
+.++.++..+. .+|.. ..+++++|+++++.+.+.....+..+++|++|++++|.+++..+..+.. +++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC-ccCCCEEeCC
Confidence 45666666665 44442 3467888888888877766666777888888888888877443444444 7888888888
Q ss_pred CCc-CCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCccccc
Q 042271 310 RNA-FNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG 388 (517)
Q Consensus 310 ~~~-i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 388 (517)
+|. +....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++......+..+++|++|++++|.++.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 886 66555777888888888888888877 4545556667888888888888876666667778888888888888876
Q ss_pred ccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCc
Q 042271 389 EILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSP 468 (517)
Q Consensus 389 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 468 (517)
..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++..........
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~ 247 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH
Confidence 66666778888888888888887666777888888888888888888666667788888888888888875533322223
Q ss_pred ccccEEEccCCcCCccchhhhcC--CCcccEEECCCC
Q 042271 469 ASIEQLHLSKNKIEGRLESIIHD--SPHLVTLDLSCN 503 (517)
Q Consensus 469 ~~L~~L~l~~n~~~~~~~~~l~~--~~~L~~l~l~~n 503 (517)
..++.+....+.+....|..+++ +..++..++.+|
T Consensus 248 ~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 44555556666666555655544 234444444444
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=8.3e-26 Score=211.74 Aligned_cols=224 Identities=19% Similarity=0.212 Sum_probs=168.7
Q ss_pred CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL 355 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 355 (517)
+.++.|+++++.++ .+|..++. +++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|.. +..+++|+.|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEE
Confidence 45556666666555 55555544 566666666666665 45555666666666666666655 44443 3345666666
Q ss_pred EccCCccccccccc---------ccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcE
Q 042271 356 ALSNNSLQGHIFSE---------KFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALED 426 (517)
Q Consensus 356 ~l~~n~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 426 (517)
++++|...+..+.. +..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+..+++|+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence 66665554444433 345899999999999988 66777889999999999999998 46667889999999
Q ss_pred EECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcC
Q 042271 427 IIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSL 505 (517)
Q Consensus 427 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~ 505 (517)
|++++|.+.+..|..+..+++|++|++++|++.+..+..+. +++|++|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999999888888999999999999999988887776665 89999999999999889999999999999999988776
Q ss_pred C
Q 042271 506 H 506 (517)
Q Consensus 506 ~ 506 (517)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 5
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=7e-26 Score=207.64 Aligned_cols=225 Identities=21% Similarity=0.252 Sum_probs=185.9
Q ss_pred EEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCC
Q 042271 281 LDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN 360 (517)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n 360 (517)
++..+..+. .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 344444444 555543 357888888888888666667888888888888888887 566566677888999999988
Q ss_pred cccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCc-cchhhcCCCCCcEEECCCCccccccc
Q 042271 361 SLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGE-IPRWLGNLSALEDIIMPNNNLEGPIP 439 (517)
Q Consensus 361 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~ 439 (517)
.+++.....+..+++|++|++++|.+....+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|++.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 88877777788889999999999988766666688889999999999998753 58889999999999999999987766
Q ss_pred ccccCCCCcc----EEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 440 IEFCQLNSLK----ILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 440 ~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
..+..+++|+ +|++++|++++..+..+...+|++|++++|.+++.++..|..+++|++|++++|++++.+|
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 7777777777 8999999998888888877899999999999998888889999999999999999999886
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.5e-25 Score=213.17 Aligned_cols=281 Identities=18% Similarity=0.168 Sum_probs=182.9
Q ss_pred cCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCc
Q 042271 28 GESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMR 107 (517)
Q Consensus 28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 107 (517)
...|+.....+++++.+..+|. .+ .++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..++.+++|+
T Consensus 27 ~~~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CCEECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 3456666678888888888876 33 25889999999988866666888899999999998888876677788889999
Q ss_pred EEEccccccCCcccccccCCCCCcEEeccCCccccccCC-CcccCCCCCceeecccCCCCCCCCCcccccCccccccccc
Q 042271 108 ELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISS-SPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDS 186 (517)
Q Consensus 108 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l 186 (517)
+|++++|.+++..+..+.++++|++|++++|++.. ++. ..+..+++|++|++++|... .....
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~-~~~~~-------------- 167 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTF-TKIQR-------------- 167 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSC-CEECT--------------
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccc-cccCH--------------
Confidence 99999998886655668888999999999988864 444 46788889999999887411 11000
Q ss_pred ccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCC
Q 042271 187 EICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFG 266 (517)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (517)
..+....+|+++++++|.+....|..+..+++|+.++++++.+. .++..++..+++|+.|++++|.+.+
T Consensus 168 ----------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 168 ----------KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp ----------TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred ----------HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence 11223346777777777666666777777778888888887775 4555555567778888887777655
Q ss_pred Cccccc---ccCCcccEEEccCCcccc----cCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccccc
Q 042271 267 SFWMPI---HSHQKLATLDVSNNFFRG----HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG 339 (517)
Q Consensus 267 ~~~~~~---~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~ 339 (517)
.....+ .....++.++++.+.+.+ .+|..+.. +++|++|++++|.++......+..+++|++|++++|.+.+
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ-ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccccchhhccccccccccCcchhhhHHHHhc-ccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 432222 123445555555554432 12222222 4455555555555542222223455555555555555443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.8e-26 Score=215.21 Aligned_cols=249 Identities=20% Similarity=0.221 Sum_probs=197.4
Q ss_pred hcccccceEeccCCccCCCcccccccCCcccEEEccCCccc-ccCChhhh------hccCCCcEEEccCCcCCCCCchhh
Q 042271 249 ENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFR-GHIPVEIG------TYLPGLMDLNLSRNAFNGSIPSSF 321 (517)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~i~~~~~~~~ 321 (517)
...++|++++++++.+ ..+..+.. .|+.|+++++.+. ..++.... ..+++|++|++++|.+++..+..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4556788888888877 33333332 2788888888773 34555443 137899999999999998777766
Q ss_pred --hcCCCCcEEeccccccccccchhHHhhc-----CCCcEEEccCCcccccccccccCCCCCcEEEccCcccccc--cch
Q 042271 322 --ADMKMLERVDISYNQLTGEIPERMAARC-----FSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGE--ILE 392 (517)
Q Consensus 322 --~~l~~L~~L~l~~~~i~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~ 392 (517)
..+++|++|++++|.+.+. |.. +..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 8899999999999999855 543 3444 8999999999999988878899999999999999997543 223
Q ss_pred hh--hhcccCCeEEecCCCCCC---ccchhhcCCCCCcEEECCCCccccccc-ccccCCCCccEEEccCCccccCCCCCC
Q 042271 393 SL--SKCYLLEGLYLSDNHLTG---EIPRWLGNLSALEDIIMPNNNLEGPIP-IEFCQLNSLKILDLSNNSIFRTLPSCF 466 (517)
Q Consensus 393 ~~--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~ 466 (517)
.+ ..+++|++|++++|.+.+ .....+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|+++. .+..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhc
Confidence 33 788999999999999983 222445688999999999999987664 456678999999999999974 44444
Q ss_pred CcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCC
Q 042271 467 SPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHG 507 (517)
Q Consensus 467 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~ 507 (517)
. ++|++|++++|.+++. |. +..+++|++|++++|++++
T Consensus 273 ~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 3 8999999999999977 44 8999999999999999985
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.1e-25 Score=210.97 Aligned_cols=212 Identities=25% Similarity=0.339 Sum_probs=190.9
Q ss_pred cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL 379 (517)
Q Consensus 300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 379 (517)
.+.++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+. .++..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 578999999999998 67778888999999999999998 777654 56999999999999998 556789999999999
Q ss_pred EccCcccccccchhhh---------hcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccE
Q 042271 380 QLDGNKFTGEILESLS---------KCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI 450 (517)
Q Consensus 380 ~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 450 (517)
++++|.+....+..+. ++++|++|++++|.+. .+|..+..+++|++|++++|.+.+ ++..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 9999887666666554 4899999999999998 788889999999999999999995 6667999999999
Q ss_pred EEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccCCC
Q 042271 451 LDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRLP 517 (517)
Q Consensus 451 L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 517 (517)
|++++|++.+..+..+. +++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.++++|+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 99999999888887666 89999999999999989999999999999999999999999999999875
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=7.1e-25 Score=214.82 Aligned_cols=247 Identities=23% Similarity=0.214 Sum_probs=186.6
Q ss_pred CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307 (517)
Q Consensus 228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 307 (517)
..+.++..+..+. .+|..+ .++++.|++++|.+.......+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 3456666666666 455433 367888888888887776677788888888888888887 44444444478888888
Q ss_pred ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCc-ccccccccccCCCCCcEEEccCccc
Q 042271 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNS-LQGHIFSEKFNLTNLMTLQLDGNKF 386 (517)
Q Consensus 308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~ 386 (517)
+++|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|. +.......+..+++|++|++++|.+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 8888888666667888888888888888877 6666667778888888888843 4444445677888888888888888
Q ss_pred ccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC
Q 042271 387 TGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF 466 (517)
Q Consensus 387 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 466 (517)
... + .+..+++|++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|+|++|+++...+..+
T Consensus 198 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 198 REI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp SSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 743 2 46777888888888888887667788888888888888888887777788888888888888888877666665
Q ss_pred C-cccccEEEccCCcCC
Q 042271 467 S-PASIEQLHLSKNKIE 482 (517)
Q Consensus 467 ~-~~~L~~L~l~~n~~~ 482 (517)
. +++|+.|++++|.+.
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 5 688888888888763
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.1e-24 Score=214.29 Aligned_cols=246 Identities=23% Similarity=0.173 Sum_probs=167.3
Q ss_pred cCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEc
Q 042271 229 LKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNL 308 (517)
Q Consensus 229 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 308 (517)
...++..+..+. .+|..+ .++++.|++++|.+.......+..+++|+.|++++|.+++..+..+ ..+++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF-NGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhc-cCcccCCEEEC
Confidence 445565555555 344422 3567777777777766666667777777777777777763333333 33777777777
Q ss_pred cCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCC-cccccccccccCCCCCcEEEccCcccc
Q 042271 309 SRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNN-SLQGHIFSEKFNLTNLMTLQLDGNKFT 387 (517)
Q Consensus 309 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (517)
++|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++| .+.......+..+++|++|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 777777666666777777777777777776 566666666777777777774 333334445667777777777777776
Q ss_pred cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC
Q 042271 388 GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS 467 (517)
Q Consensus 388 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 467 (517)
+. ..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|++++|+++...+..+.
T Consensus 210 ~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 DM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp SC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred cc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 43 2366677777777777777766677777777777777777777766667777777777777777777666655554
Q ss_pred -cccccEEEccCCcCC
Q 042271 468 -PASIEQLHLSKNKIE 482 (517)
Q Consensus 468 -~~~L~~L~l~~n~~~ 482 (517)
+++|++|++++|.+.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 677777777777653
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.3e-26 Score=212.50 Aligned_cols=268 Identities=18% Similarity=0.149 Sum_probs=211.1
Q ss_pred cCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEc
Q 042271 229 LKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNL 308 (517)
Q Consensus 229 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 308 (517)
++..++..+.+. ..+..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ ...+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 444455555554 3334445667899999999999988877788999999999999999874443 334889999999
Q ss_pred cCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCccccc
Q 042271 309 SRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTG 388 (517)
Q Consensus 309 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 388 (517)
++|.+++. ...++|++|++++|.+.+. +.. .+++|+.|++++|.+++.....+..+++|++|++++|.+.+
T Consensus 88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQEL-----LVGPSIETLHAANNNISRV-SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEEE-----EECTTCCEEECCSSCCSEE-EEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred cCCccccc-----cCCCCcCEEECCCCccCCc-Ccc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 99988732 3458999999999998843 332 36789999999999988777788889999999999999987
Q ss_pred ccchhh-hhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC
Q 042271 389 EILESL-SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS 467 (517)
Q Consensus 389 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 467 (517)
..+..+ ..+++|++|++++|.+.+. +. ...+++|++|++++|.+.+ ++..+..+++|++|++++|+++........
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 235 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRF 235 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhc
Confidence 666666 4689999999999999843 32 3458999999999999985 445588899999999999999765444444
Q ss_pred cccccEEEccCCcCC-ccchhhhcCCCcccEEECCCC-cCCCCCCcc
Q 042271 468 PASIEQLHLSKNKIE-GRLESIIHDSPHLVTLDLSCN-SLHGSIPNQ 512 (517)
Q Consensus 468 ~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~l~l~~n-~~~~~~~~~ 512 (517)
+++|++|++++|.+. +..+..+..++.|+.++++++ .+++..|..
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 899999999999998 778889999999999999844 444444443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.9e-26 Score=213.44 Aligned_cols=259 Identities=20% Similarity=0.169 Sum_probs=151.0
Q ss_pred eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271 204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV 283 (517)
Q Consensus 204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (517)
+++..++..+.+.......+..+++|+.|+++++.+.+..+.. +..+++|++|++++|.+.+... +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHH-HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHH-hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3444444444333333334445556777777777666443333 3566677777777776654332 666667777777
Q ss_pred cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc
Q 042271 284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363 (517)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~ 363 (517)
++|.++ .++ ..++|++|++++|.+++..+. .+++|++|++++|.+. .++...+..+++|+.|++++|.++
T Consensus 88 s~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 88 NNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CSSEEE-EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCC
T ss_pred cCCccc-ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCC
Confidence 777665 222 135677777777766643322 2456777777777666 344444455667777777777666
Q ss_pred ccccccc-cCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccc
Q 042271 364 GHIFSEK-FNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEF 442 (517)
Q Consensus 364 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 442 (517)
+..+..+ ..+++|++|++++|.++... ....+++|++|++++|.+. .++..+..+++|+.|++++|.+. .+|..+
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred cccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHh
Confidence 5544444 25667777777777665431 2223666777777777766 34444666677777777777666 345566
Q ss_pred cCCCCccEEEccCCccc-cCCCCCCC-cccccEEEccCC
Q 042271 443 CQLNSLKILDLSNNSIF-RTLPSCFS-PASIEQLHLSKN 479 (517)
Q Consensus 443 ~~~~~L~~L~l~~n~l~-~~~~~~~~-~~~L~~L~l~~n 479 (517)
..+++|+.|++++|+++ +..+..+. ++.|+.|++.++
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 66677777777777665 22222222 556666666533
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.4e-24 Score=215.75 Aligned_cols=266 Identities=23% Similarity=0.247 Sum_probs=215.3
Q ss_pred eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271 204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV 283 (517)
Q Consensus 204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (517)
+++.++++++.+. .+|..+. ++|+.|++++|.+. .+|. .+++|++|++++|.+..... .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 5788888888776 5565554 78999999999988 4554 46899999999999875432 6789999999
Q ss_pred cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc
Q 042271 284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363 (517)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~ 363 (517)
++|.++ .++. .+++|+.|++++|.++. ++. .+++|++|++++|.+. .++. .+++|+.|++++|.++
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCC
Confidence 999997 5555 37899999999999885 443 3589999999999988 4543 3578999999999988
Q ss_pred ccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccccccc
Q 042271 364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443 (517)
Q Consensus 364 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 443 (517)
... ..+++|+.|++++|.+... +. ..++|+.|++++|.+. .+|. .+++|+.|++++|.+.+ +| .
T Consensus 175 ~l~----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---C
T ss_pred CCc----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---C
Confidence 643 4579999999999999853 32 2478999999999998 4443 35899999999999985 44 4
Q ss_pred CCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccC
Q 042271 444 QLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR 515 (517)
Q Consensus 444 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~ 515 (517)
.+++|+.|++++|+++.... .+++|++|++++|.++ .+|..|.++++|+.|++++|++++.+|..+.+
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 56899999999999975443 5799999999999999 45677999999999999999999888776543
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.5e-25 Score=207.48 Aligned_cols=252 Identities=20% Similarity=0.150 Sum_probs=190.0
Q ss_pred cccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCC-cccccc-------cCCcccEEEccCCcccccCC
Q 042271 222 FLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGS-FWMPIH-------SHQKLATLDVSNNFFRGHIP 293 (517)
Q Consensus 222 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-------~~~~L~~L~l~~~~~~~~~~ 293 (517)
..+..++|+.++++++.+ .+|..+... ++.|+++++.+... .+..+. .+++|++|++++|.+++.+|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 345566788888888888 666655332 78888888777432 222222 57888999999988887777
Q ss_pred hhhh-hccCCCcEEEccCCcCCCCCchhhhcC-----CCCcEEeccccccccccchhHHhhcCCCcEEEccCCccccc--
Q 042271 294 VEIG-TYLPGLMDLNLSRNAFNGSIPSSFADM-----KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGH-- 365 (517)
Q Consensus 294 ~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~-- 365 (517)
..++ ..+++|++|++++|.+++. +..+..+ ++|++|++++|.+. .++...+..+++|++|++++|.+.+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchH
Confidence 7652 4488899999999988866 6777776 88999999999887 55555566788999999999886643
Q ss_pred cccc--ccCCCCCcEEEccCccccc---ccchhhhhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCccccccc
Q 042271 366 IFSE--KFNLTNLMTLQLDGNKFTG---EILESLSKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLEGPIP 439 (517)
Q Consensus 366 ~~~~--~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 439 (517)
.+.. +..+++|++|++++|.+.. .....+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+. .+|
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 1222 3688999999999999873 222344577899999999999987553 45667899999999999998 566
Q ss_pred ccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCcc
Q 042271 440 IEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR 484 (517)
Q Consensus 440 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 484 (517)
..+. ++|++|++++|++++. +....+++|++|++++|.+++.
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred hhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence 6665 8999999999999776 5555589999999999998753
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=9.3e-24 Score=192.56 Aligned_cols=205 Identities=25% Similarity=0.300 Sum_probs=118.4
Q ss_pred cccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEE
Q 042271 277 KLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA 356 (517)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 356 (517)
..+.++++++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 4667777777776 566544 346777777777777555556777777777777777666 55555555556666666
Q ss_pred ccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccc
Q 042271 357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG 436 (517)
Q Consensus 357 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 436 (517)
+++|.+.......+..+++|++|++++|.+ ....+..+..+++|++|++++|.+.+
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQL------------------------KSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCC------------------------CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCcc------------------------CeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 666655544444444455555555555544 43334444445555555555555544
Q ss_pred cccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 437 PIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 437 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
..+..|..+++|++|++++|+++...+..+. +++|++|++++|.+++..+..|..+++|+.|++++|++++.++
T Consensus 148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 3333455555555555555555544444333 4556666666666555555556666666666666666655543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.2e-25 Score=218.20 Aligned_cols=246 Identities=19% Similarity=0.166 Sum_probs=197.5
Q ss_pred ccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEE
Q 042271 251 NANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERV 330 (517)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 330 (517)
+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+ + ..+++|++|++++|.+++. ...++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L-ESLSTLRTLDLNNNYVQEL-----LVGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C-TTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c-ccCCCCCEEEecCCcCCCC-----CCCCCcCEE
Confidence 4589999999999988777788899999999999999875444 3 3488999999999988743 234889999
Q ss_pred eccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhh-hcccCCeEEecCCC
Q 042271 331 DISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS-KCYLLEGLYLSDNH 409 (517)
Q Consensus 331 ~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 409 (517)
++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus 105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999998844332 367899999999999887777888899999999999999877777765 78899999999999
Q ss_pred CCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCC-ccchhh
Q 042271 410 LTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIE-GRLESI 488 (517)
Q Consensus 410 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~ 488 (517)
+.+. +. ...+++|+.|++++|.+.+ +|..+..+++|+.|++++|++++.......+++|+.|++++|.+. +.++..
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 8854 32 3458899999999999986 444588889999999999999775554444789999999999987 667788
Q ss_pred hcCCCcccEEECC-------CCcCCCCCCc
Q 042271 489 IHDSPHLVTLDLS-------CNSLHGSIPN 511 (517)
Q Consensus 489 l~~~~~L~~l~l~-------~n~~~~~~~~ 511 (517)
+..++.|+.++++ .++..+..|.
T Consensus 258 ~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred HHhCCCCcEEeccccccccCCCcccccCCc
Confidence 8888999988886 6666655553
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.5e-24 Score=197.94 Aligned_cols=205 Identities=21% Similarity=0.195 Sum_probs=102.3
Q ss_pred cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL 379 (517)
Q Consensus 300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 379 (517)
+++|+.|++++|.+... ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++.....+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 33444444444444311 224444444444444444442 21 22334455555555554444444444455555555
Q ss_pred EccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271 380 QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459 (517)
Q Consensus 380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 459 (517)
++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 55555554444444455555555555555555444444455555555555555555444444555555555555555555
Q ss_pred cCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccCC
Q 042271 460 RTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGRL 516 (517)
Q Consensus 460 ~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~ 516 (517)
+..+..+. +++|++|++++|.+.+ .+++|+.+++..|.++|.+|.+++++
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 54444333 4555555555555442 24455566666666666666665554
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.7e-24 Score=212.47 Aligned_cols=216 Identities=24% Similarity=0.190 Sum_probs=99.0
Q ss_pred CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL 355 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 355 (517)
++|+.|++++|.+++..+..+. .+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. .++|+.|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEE
Confidence 3455555555555422222222 24555555555555443322 444555555555555444 2221 2445555
Q ss_pred EccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhc-CCCCCcEEECCCCcc
Q 042271 356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLG-NLSALEDIIMPNNNL 434 (517)
Q Consensus 356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 434 (517)
++++|.+++.... .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 5555554433221 234455555555555444444444455555555555555443444433 445555555555555
Q ss_pred cccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271 435 EGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506 (517)
Q Consensus 435 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~ 506 (517)
.+..+ ...+++|+.|++++|++++..+....+++|+.|++++|.+++ +|..+..+++|+.|++++|+++
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 43211 123445555555555554443333334555555555555543 2333444455555555555554
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.3e-22 Score=204.34 Aligned_cols=93 Identities=27% Similarity=0.370 Sum_probs=53.3
Q ss_pred ccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEec
Q 042271 56 VHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDV 135 (517)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 135 (517)
.++++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35666666666666 4444433 56666666666666 3443 3456666666666665 3343 4566666666
Q ss_pred cCCccccccCCCcccCCCCCceeecccCC
Q 042271 136 SDNQLTQNISSSPLMHLTSIEELILSNNH 164 (517)
Q Consensus 136 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 164 (517)
++|.+.+ ++. .+++|++|++++|.
T Consensus 109 s~N~l~~-l~~----~l~~L~~L~L~~N~ 132 (622)
T 3g06_A 109 FSNPLTH-LPA----LPSGLCKLWIFGNQ 132 (622)
T ss_dssp CSCCCCC-CCC----CCTTCCEEECCSSC
T ss_pred cCCcCCC-CCC----CCCCcCEEECCCCC
Confidence 6666543 322 34556666666654
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.6e-22 Score=184.38 Aligned_cols=206 Identities=24% Similarity=0.202 Sum_probs=176.4
Q ss_pred cccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEe
Q 042271 252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD 331 (517)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 331 (517)
...+.++++++.++... ..+ .+.+++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip-~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIP-SNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccC-CCC--CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 45788999998887543 222 368999999999998 55554444589999999999999977677789999999999
Q ss_pred ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271 332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411 (517)
Q Consensus 332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 411 (517)
+++|.+. .++...+..+++|+.|++++|.++......+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 92 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 92 VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 9999998 677777788999999999999999888778889999999999999998776677889999999999999999
Q ss_pred CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCC
Q 042271 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL 462 (517)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 462 (517)
...+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|++....
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 777777899999999999999998766667888999999999999885543
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.3e-22 Score=183.64 Aligned_cols=203 Identities=22% Similarity=0.218 Sum_probs=137.0
Q ss_pred cccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271 272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS 351 (517)
Q Consensus 272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~ 351 (517)
+..++++++++++++.++ .+|..+ .+.++.|++++|.+++..+..+..+++|++|++++|.+. .++.. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence 456678888888888876 666554 357888888888887666677788888888888888777 33332 45677
Q ss_pred CcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431 (517)
Q Consensus 352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 431 (517)
|+.|++++|.+.. ++..+..+++|++|++++|.++...+..+..+++|++|++++|++....+..|..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 7777777777663 334555667777777777777655556666667777777777776655555566666777777777
Q ss_pred CcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCC
Q 042271 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIE 482 (517)
Q Consensus 432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~ 482 (517)
|++....+..|..+++|++|++++|+++......+...+|+.|++++|.+.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 766654444556666677777776666655555555566666666666654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.1e-22 Score=185.47 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=178.2
Q ss_pred CCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEE
Q 042271 301 PGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQ 380 (517)
Q Consensus 301 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 380 (517)
..+..+++.++.+.+. .....+++|+.|++++|.+. .++. +..+++|+.|++++|.+++. ..+..+++|++|+
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 3566667777776543 45678899999999999987 4443 45699999999999998863 4788999999999
Q ss_pred ccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccc
Q 042271 381 LDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR 460 (517)
Q Consensus 381 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 460 (517)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 99999997777778999999999999999997777789999999999999999997777778999999999999999988
Q ss_pred CCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCCc
Q 042271 461 TLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPN 511 (517)
Q Consensus 461 ~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~ 511 (517)
..+..+. +++|++|++++|.+++..+..|..+++|++|++++|++++.+|.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 7777655 89999999999999999999999999999999999999998874
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.7e-23 Score=199.32 Aligned_cols=252 Identities=17% Similarity=0.138 Sum_probs=163.8
Q ss_pred eeccCCcCCCCCChhhhhcccccceEeccCCccCCCcc----cccccCC-cccEEEccCCcccccCChhhhhc----cCC
Q 042271 232 ADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFW----MPIHSHQ-KLATLDVSNNFFRGHIPVEIGTY----LPG 302 (517)
Q Consensus 232 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~----~~~ 302 (517)
..++.+.+++.+|... ...++|++|++++|.+.+... ..+..++ +|++|++++|.+++..+..+... +++
T Consensus 3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4567777776666543 455568888888888776655 5566677 78888888888875545444431 278
Q ss_pred CcEEEccCCcCCCCCchhhh----cC-CCCcEEeccccccccccchhHHh---h-cCCCcEEEccCCcccccccc----c
Q 042271 303 LMDLNLSRNAFNGSIPSSFA----DM-KMLERVDISYNQLTGEIPERMAA---R-CFSLEILALSNNSLQGHIFS----E 369 (517)
Q Consensus 303 L~~L~l~~~~i~~~~~~~~~----~l-~~L~~L~l~~~~i~~~~~~~~~~---~-~~~L~~L~l~~n~~~~~~~~----~ 369 (517)
|++|++++|.+++..+..+. .+ ++|++|++++|.+.+..+..+.. . +++|++|++++|.+++.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 88888888888766555443 33 78888888888877444433322 2 35788888888877753332 2
Q ss_pred ccCCC-CCcEEEccCcccccccchhhh----hc-ccCCeEEecCCCCCCc----cchhhcC-CCCCcEEECCCCcccccc
Q 042271 370 KFNLT-NLMTLQLDGNKFTGEILESLS----KC-YLLEGLYLSDNHLTGE----IPRWLGN-LSALEDIIMPNNNLEGPI 438 (517)
Q Consensus 370 ~~~~~-~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~ 438 (517)
+..++ +|++|++++|.+++..+..+. .+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33444 788888888887765554433 33 4788888888877642 3444544 357888888888776533
Q ss_pred c----ccccCCCCccEEEccCCccccCCC--------CCCCcccccEEEccCCcCCcc
Q 042271 439 P----IEFCQLNSLKILDLSNNSIFRTLP--------SCFSPASIEQLHLSKNKIEGR 484 (517)
Q Consensus 439 ~----~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~~~L~~L~l~~n~~~~~ 484 (517)
+ ..+..+++|++|++++|.+.+... ....+++|++|++++|.+...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 334566778888888777433222 112256777777777777654
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.2e-23 Score=195.92 Aligned_cols=199 Identities=17% Similarity=0.199 Sum_probs=98.8
Q ss_pred CcCEeeccCCcCCCCCChhhhhcc--cccceEeccCCccCCCcccccccCCcccEEEccCCccccc-CChhhhhccCCCc
Q 042271 228 DLKNADLSHLNLSGKFPNWLVENN--ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGH-IPVEIGTYLPGLM 304 (517)
Q Consensus 228 ~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~ 304 (517)
.++.++++++.+. +. .+..+ ++++.++++++.+.+.... +..+++|++|++++|.+.+. ++..+ ..+++|+
T Consensus 48 ~~~~l~l~~~~~~---~~-~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PD-VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC---HH-HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCS
T ss_pred hheeeccccccCC---HH-HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCC
Confidence 3566666666554 12 22333 5666666666665544332 33456666666666655432 22222 2256666
Q ss_pred EEEccCCcCCCCCchhhhcCCCCcEEecccc-ccccccchhHHhhcCCCcEEEccCC-ccccc-ccccccCCC-CCcEEE
Q 042271 305 DLNLSRNAFNGSIPSSFADMKMLERVDISYN-QLTGEIPERMAARCFSLEILALSNN-SLQGH-IFSEKFNLT-NLMTLQ 380 (517)
Q Consensus 305 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~ 380 (517)
+|++++|.+++..+..+..+++|++|++++| .+.+......+..+++|++|++++| .+++. ....+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 6666666555444555555666666666666 3443222333444555555555555 54432 223344455 555555
Q ss_pred ccCcc--cc-cccchhhhhcccCCeEEecCCC-CCCccchhhcCCCCCcEEECCCC
Q 042271 381 LDGNK--FT-GEILESLSKCYLLEGLYLSDNH-LTGEIPRWLGNLSALEDIIMPNN 432 (517)
Q Consensus 381 l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~ 432 (517)
+++|. ++ ...+..+..+++|+.|++++|. +++..+..+..+++|+.|++++|
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55552 22 1223334445555555555554 33333344444444555554444
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=8.5e-22 Score=180.94 Aligned_cols=202 Identities=23% Similarity=0.215 Sum_probs=134.3
Q ss_pred hcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCc
Q 042271 249 ENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 328 (517)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 328 (517)
..++++++++++++.++..... + .+.++.|++++|.+++..+..+. .+++|+.|++++|.+++..+ ...+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred cccCCccEEECCCCCCCcCCCC-C--CCCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 3556677777777766543321 2 25677777777777633333333 36777777777777764322 25677777
Q ss_pred EEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCC
Q 042271 329 RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408 (517)
Q Consensus 329 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 408 (517)
+|++++|.+. .+|.. +..+++|+.|++++|.++...+..|..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 7777777776 55542 345677777777777777666666777777777777777777655566667777777777777
Q ss_pred CCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271 409 HLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459 (517)
Q Consensus 409 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 459 (517)
++....+..+..+++|+.|++++|++. .+|..+...++|+.+++++|++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 777555556677777777777777777 45556666677777777777763
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=187.60 Aligned_cols=227 Identities=17% Similarity=0.171 Sum_probs=177.4
Q ss_pred CcccEEEccCCcccccCChhh--hhccCCCcEEEccCCcCCCCCchhh--hcCCCCcEEeccccccccccc---hhHHhh
Q 042271 276 QKLATLDVSNNFFRGHIPVEI--GTYLPGLMDLNLSRNAFNGSIPSSF--ADMKMLERVDISYNQLTGEIP---ERMAAR 348 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~L~l~~~~i~~~~~---~~~~~~ 348 (517)
..++.+.+.++.+++.....+ ...+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 356777777766542211111 1125679999999999988888777 889999999999999885443 223346
Q ss_pred cCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccc--c--chhhhhcccCCeEEecCCCCCCccch----hhcC
Q 042271 349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGE--I--LESLSKCYLLEGLYLSDNHLTGEIPR----WLGN 420 (517)
Q Consensus 349 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~ 420 (517)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . ...+..+++|++|++++|.++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 88999999999999888878888999999999999987532 1 223467889999999999997 3333 3577
Q ss_pred CCCCcEEECCCCcccccccccccCC---CCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccE
Q 042271 421 LSALEDIIMPNNNLEGPIPIEFCQL---NSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVT 497 (517)
Q Consensus 421 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 497 (517)
+++|++|++++|.+.+..|..+..+ ++|++|++++|+++.. +..+ .++|++|++++|.+++... +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~-~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL-PAKLRVLDLSSNRLNRAPQ--PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC-CSCCSCEECCSCCCCSCCC--TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh-cCCCCEEECCCCcCCCCch--hhhCCCccE
Confidence 8999999999999998767776666 7999999999999754 4444 4899999999999997632 788899999
Q ss_pred EECCCCcCCC
Q 042271 498 LDLSCNSLHG 507 (517)
Q Consensus 498 l~l~~n~~~~ 507 (517)
|++++|+|++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999984
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=1e-21 Score=179.80 Aligned_cols=203 Identities=23% Similarity=0.165 Sum_probs=89.7
Q ss_pred ccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEec
Q 042271 253 NLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDI 332 (517)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 332 (517)
++++|+++++.+.+.....+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4555555555554443334444555555555555544 222222222445555555555554444444455555555555
Q ss_pred cccccccccchhHHhhcCCCcEEEccCCccccc-ccccccCCCCCcEEEccCcccccccchhhhhcccCC----eEEecC
Q 042271 333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGH-IFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLE----GLYLSD 407 (517)
Q Consensus 333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~ 407 (517)
++|.+. .++...+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+ .|++++
T Consensus 108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 555444 22222233344455555555444432 233444444555555555444433333444444444 444444
Q ss_pred CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcc
Q 042271 408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458 (517)
Q Consensus 408 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 458 (517)
|.+.+..+..+ ...+|+.|++++|.+.+..+..|..+++|++|++++|++
T Consensus 187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 187 NPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 44442222222 222444444444444433333334444444444444444
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.9e-22 Score=192.11 Aligned_cols=254 Identities=19% Similarity=0.170 Sum_probs=190.4
Q ss_pred eeccccccCCCccccccccCCcCEeeccCCcCCCCCChh---hhhccc-ccceEeccCCccCCCcccccccC-----Ccc
Q 042271 208 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNW---LVENNA-NLERLLLADNSLFGSFWMPIHSH-----QKL 278 (517)
Q Consensus 208 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~---~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 278 (517)
..++.+.+.+..|..+...++|+.|++++|.+.+..+.. .+..++ +|++|++++|.+.+..+..+... ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 466777777777888777788999999999988665522 234566 89999999999887766656554 899
Q ss_pred cEEEccCCcccccCChhhhhc---c-CCCcEEEccCCcCCCCCchhhhc-----CCCCcEEeccccccccccchhH---H
Q 042271 279 ATLDVSNNFFRGHIPVEIGTY---L-PGLMDLNLSRNAFNGSIPSSFAD-----MKMLERVDISYNQLTGEIPERM---A 346 (517)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~---~-~~L~~L~l~~~~i~~~~~~~~~~-----l~~L~~L~l~~~~i~~~~~~~~---~ 346 (517)
++|++++|.+++..+..+... + ++|++|++++|.+++..+..+.. +++|++|++++|.+.+.....+ +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999999986555544332 3 79999999999998766655443 4699999999999885444332 2
Q ss_pred hhcC-CCcEEEccCCccccccccc----ccCC-CCCcEEEccCccccccc----chhhhh-cccCCeEEecCCCCCCccc
Q 042271 347 ARCF-SLEILALSNNSLQGHIFSE----KFNL-TNLMTLQLDGNKFTGEI----LESLSK-CYLLEGLYLSDNHLTGEIP 415 (517)
Q Consensus 347 ~~~~-~L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~~~ 415 (517)
..++ +|+.|++++|.+++..... +..+ ++|++|++++|.+.+.. +..+.. .++|++|++++|.+.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3344 8999999999998665543 3345 59999999999998633 334444 4589999999999986443
Q ss_pred ----hhhcCCCCCcEEECCCCccccc-------ccccccCCCCccEEEccCCccccC
Q 042271 416 ----RWLGNLSALEDIIMPNNNLEGP-------IPIEFCQLNSLKILDLSNNSIFRT 461 (517)
Q Consensus 416 ----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~n~l~~~ 461 (517)
..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4457789999999999985432 334567888999999999998665
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.7e-22 Score=189.61 Aligned_cols=255 Identities=17% Similarity=0.181 Sum_probs=193.6
Q ss_pred cccceEeccCCccCCCcccccccC--CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCC-CchhhhcCCCCc
Q 042271 252 ANLERLLLADNSLFGSFWMPIHSH--QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGS-IPSSFADMKMLE 328 (517)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~ 328 (517)
..++.++++++.+.. ..+..+ +.++.++++++.+.+..+. .+. +++|++|++++|.+++. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hcc-CCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 347889998887652 334445 7899999999988755443 444 78999999999988754 667788999999
Q ss_pred EEeccccccccccchhHHhhcCCCcEEEccCC-ccccc-ccccccCCCCCcEEEccCc-ccccc-cchhhhhcc-cCCeE
Q 042271 329 RVDISYNQLTGEIPERMAARCFSLEILALSNN-SLQGH-IFSEKFNLTNLMTLQLDGN-KFTGE-ILESLSKCY-LLEGL 403 (517)
Q Consensus 329 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L 403 (517)
+|++++|.+.+..+.. +..+++|++|++++| .+++. ....+..+++|++|++++| .+++. .+..+..++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 9999999887555544 445899999999999 56653 4445778999999999999 88753 456678889 99999
Q ss_pred EecCC--CCC-CccchhhcCCCCCcEEECCCCc-ccccccccccCCCCccEEEccCCc-cccCCCCCC-CcccccEEEcc
Q 042271 404 YLSDN--HLT-GEIPRWLGNLSALEDIIMPNNN-LEGPIPIEFCQLNSLKILDLSNNS-IFRTLPSCF-SPASIEQLHLS 477 (517)
Q Consensus 404 ~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~~~L~~L~l~ 477 (517)
++++| .+. ..++..+..+++|+.|++++|. +.+..+..+..+++|++|++++|. ++......+ .+++|++|+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 99999 454 3566777889999999999998 666667788889999999999995 333222123 37899999999
Q ss_pred CCcCCccchhhhcCCCcccEEECCCCcCCCCCCccccC
Q 042271 478 KNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIPNQIGR 515 (517)
Q Consensus 478 ~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~ 515 (517)
+| ++......+. .+++.|++++|.+++..|..+++
T Consensus 281 ~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 281 GI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred Cc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 99 5543333332 24666678999999999988774
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.4e-22 Score=178.08 Aligned_cols=203 Identities=17% Similarity=0.156 Sum_probs=153.4
Q ss_pred cCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccc-cccccchhHHhhcCCCcEEEccC-Ccccccccc
Q 042271 291 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQ-LTGEIPERMAARCFSLEILALSN-NSLQGHIFS 368 (517)
Q Consensus 291 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~ 368 (517)
.+|. + .+++++|++++|.+++..+..+..+++|++|++++|. +. .++...+..+++|+.|++++ |.++.....
T Consensus 25 ~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 25 RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 5565 2 4578888888888886666678888888888888886 65 66666677788888888887 888776667
Q ss_pred cccCCCCCcEEEccCcccccccchhhhhcccCC---eEEecCC-CCCCccchhhcCCCCCc-EEECCCCccccccccccc
Q 042271 369 EKFNLTNLMTLQLDGNKFTGEILESLSKCYLLE---GLYLSDN-HLTGEIPRWLGNLSALE-DIIMPNNNLEGPIPIEFC 443 (517)
Q Consensus 369 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~ 443 (517)
.|..+++|++|++++|.+.. .+. +..+++|+ .|++++| .+....+..|.++++|+ .|++++|.+....+..|.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 77888888888888888875 343 77777887 8888888 77755556688888888 888888888744344454
Q ss_pred CCCCccEEEccCCc-cccCCCCCCC-c-ccccEEEccCCcCCccchhhhcCCCcccEEECCCCc
Q 042271 444 QLNSLKILDLSNNS-IFRTLPSCFS-P-ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNS 504 (517)
Q Consensus 444 ~~~~L~~L~l~~n~-l~~~~~~~~~-~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~ 504 (517)
. ++|++|++++|+ ++...+..+. + ++|++|++++|.+++.++. .+++|+.|+++++.
T Consensus 178 ~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 4 788888888884 7766666655 5 7888888888888866554 45688888887764
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.4e-21 Score=174.55 Aligned_cols=158 Identities=23% Similarity=0.220 Sum_probs=81.9
Q ss_pred CCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECC
Q 042271 351 SLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMP 430 (517)
Q Consensus 351 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 430 (517)
.++.|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44444444444444444444445555555555555544444444555555555555555554444445555555555555
Q ss_pred CCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCC
Q 042271 431 NNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGS 508 (517)
Q Consensus 431 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~ 508 (517)
+|.+.+..+..|..+++|++|++++|++++..+..+. +++|++|++++|.+++..+..|..+++|++|++++|++++.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5555544444445555555555555555544443332 45555555555555555555555555555555555555544
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.3e-22 Score=195.41 Aligned_cols=240 Identities=19% Similarity=0.257 Sum_probs=119.9
Q ss_pred hcccccceEeccCCccCCCcc----cccccCCcccEEEccCCcc---cccCChhhh------hccCCCcEEEccCCcCCC
Q 042271 249 ENNANLERLLLADNSLFGSFW----MPIHSHQKLATLDVSNNFF---RGHIPVEIG------TYLPGLMDLNLSRNAFNG 315 (517)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~---~~~~~~~~~------~~~~~L~~L~l~~~~i~~ 315 (517)
..+++|++|++++|.+..... ..+..+++|++|++++|.+ .+.+|..+. ..+++|++|++++|.+++
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 345566666666665544322 2244556666666665432 223333221 124555555555555543
Q ss_pred ----CCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCC---------CCCcEEEcc
Q 042271 316 ----SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNL---------TNLMTLQLD 382 (517)
Q Consensus 316 ----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---------~~L~~L~l~ 382 (517)
.++..+..+++|++|++++|.+.+..+..+.. .+..+ ++|++|+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR---------------------ALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH---------------------HHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH---------------------HHHHHhhhhhcccCCCCcEEECC
Confidence 13334445555555555555544222111111 11111 555555555
Q ss_pred Ccccccc-cc---hhhhhcccCCeEEecCCCCCC-----ccchhhcCCCCCcEEECCCCccc----ccccccccCCCCcc
Q 042271 383 GNKFTGE-IL---ESLSKCYLLEGLYLSDNHLTG-----EIPRWLGNLSALEDIIMPNNNLE----GPIPIEFCQLNSLK 449 (517)
Q Consensus 383 ~~~~~~~-~~---~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~ 449 (517)
+|.+++. .+ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. ..++..+..+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 5555421 11 234455566666666665542 12224555566666666666653 33455556666666
Q ss_pred EEEccCCccccCC----CCC---CCcccccEEEccCCcCCc----cchhhh-cCCCcccEEECCCCcCCCCC
Q 042271 450 ILDLSNNSIFRTL----PSC---FSPASIEQLHLSKNKIEG----RLESII-HDSPHLVTLDLSCNSLHGSI 509 (517)
Q Consensus 450 ~L~l~~n~l~~~~----~~~---~~~~~L~~L~l~~n~~~~----~~~~~l-~~~~~L~~l~l~~n~~~~~~ 509 (517)
+|+|++|++++.. +.. ..+++|++|++++|.+++ .++..+ .++++|++|++++|++++..
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6666666654431 111 114666666666666665 244444 55677777777777776544
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.2e-21 Score=178.95 Aligned_cols=196 Identities=23% Similarity=0.304 Sum_probs=135.9
Q ss_pred cccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271 272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS 351 (517)
Q Consensus 272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~ 351 (517)
...+++|++|+++++.+. .++ .+. .+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~-~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS--AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG--GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhh-ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch--hhcCCCC
Confidence 445677888888888776 444 333 37788888888888774433 777888888888888776 343 2455778
Q ss_pred CcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431 (517)
Q Consensus 352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 431 (517)
|+.|++++|.+++.. .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence 888888888776532 36677788888888887764332 6777778888888887774332 67777778888877
Q ss_pred CcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCcc
Q 042271 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGR 484 (517)
Q Consensus 432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 484 (517)
|.+.+..+ +..+++|++|++++|++++..+ ...+++|++|++++|.++..
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC
T ss_pred CccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecC
Confidence 77765433 6677777777777777765543 33467777777777777643
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.1e-21 Score=175.47 Aligned_cols=190 Identities=17% Similarity=0.156 Sum_probs=166.9
Q ss_pred CCCCcEEeccccccccccchhHHhhcCCCcEEEccCCc-ccccccccccCCCCCcEEEccC-cccccccchhhhhcccCC
Q 042271 324 MKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNS-LQGHIFSEKFNLTNLMTLQLDG-NKFTGEILESLSKCYLLE 401 (517)
Q Consensus 324 l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~ 401 (517)
.+++++|++++|.+. .++...+..+++|+.|++++|. ++......|..+++|++|++++ |.+....+..+..+++|+
T Consensus 30 ~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 348999999999998 7777777889999999999997 8877777899999999999998 999877777889999999
Q ss_pred eEEecCCCCCCccchhhcCCCCCc---EEECCCC-cccccccccccCCCCcc-EEEccCCccccCCCCCCCcccccEEEc
Q 042271 402 GLYLSDNHLTGEIPRWLGNLSALE---DIIMPNN-NLEGPIPIEFCQLNSLK-ILDLSNNSIFRTLPSCFSPASIEQLHL 476 (517)
Q Consensus 402 ~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~l 476 (517)
+|++++|.+.+ +|. +..+++|+ .|++++| .+.+..+..|.++++|+ +|++++|+++.....++..++|++|++
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence 99999999985 665 88888998 9999999 88876677899999999 999999999877776777789999999
Q ss_pred cCCc-CCccchhhhcCC-CcccEEECCCCcCCCCCCccccCC
Q 042271 477 SKNK-IEGRLESIIHDS-PHLVTLDLSCNSLHGSIPNQIGRL 516 (517)
Q Consensus 477 ~~n~-~~~~~~~~l~~~-~~L~~l~l~~n~~~~~~~~~~~~~ 516 (517)
++|. ++...+..|..+ ++|+.|++++|++++..+..+.+|
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L 228 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccC
Confidence 9995 998888999999 999999999999996555556554
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.2e-21 Score=188.48 Aligned_cols=244 Identities=18% Similarity=0.187 Sum_probs=175.2
Q ss_pred CccccccccCCcCEeeccCCcCCCCCChhh---hhcccccceEeccCCccC---CCcccc-------cccCCcccEEEcc
Q 042271 218 TFPKFLYHQHDLKNADLSHLNLSGKFPNWL---VENNANLERLLLADNSLF---GSFWMP-------IHSHQKLATLDVS 284 (517)
Q Consensus 218 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~~~~L~~L~l~ 284 (517)
.++..+..+++|+.|++++|.+.+..+..+ +..+++|++|++++|.+. +..+.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 345666777888888888888776544332 245788888888886443 222222 3678899999999
Q ss_pred CCccccc----CChhhhhccCCCcEEEccCCcCCCCCchh----hhcC---------CCCcEEeccccccccccch---h
Q 042271 285 NNFFRGH----IPVEIGTYLPGLMDLNLSRNAFNGSIPSS----FADM---------KMLERVDISYNQLTGEIPE---R 344 (517)
Q Consensus 285 ~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~----~~~l---------~~L~~L~l~~~~i~~~~~~---~ 344 (517)
+|.+++. ++..+.. +++|++|++++|.+++..+.. +..+ ++|++|++++|.+.+.... .
T Consensus 103 ~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9988752 3444444 889999999999886433333 3444 8999999999998733222 3
Q ss_pred HHhhcCCCcEEEccCCccccc-----ccccccCCCCCcEEEccCcccc----cccchhhhhcccCCeEEecCCCCCCc--
Q 042271 345 MAARCFSLEILALSNNSLQGH-----IFSEKFNLTNLMTLQLDGNKFT----GEILESLSKCYLLEGLYLSDNHLTGE-- 413 (517)
Q Consensus 345 ~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~-- 413 (517)
.+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++ ...+..+..+++|+.|++++|.+.+.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 455688999999999988732 2236778889999999999885 34566777888899999999988754
Q ss_pred --cchhhcC--CCCCcEEECCCCcccc----cccccc-cCCCCccEEEccCCccccCC
Q 042271 414 --IPRWLGN--LSALEDIIMPNNNLEG----PIPIEF-CQLNSLKILDLSNNSIFRTL 462 (517)
Q Consensus 414 --~~~~~~~--~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~ 462 (517)
++..+.. +++|+.|++++|.+.+ .++..+ .++++|++|++++|++++..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 4555533 7888888888888876 356555 55788888888888886654
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=3.5e-20 Score=166.83 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=138.9
Q ss_pred cccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEE
Q 042271 277 KLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA 356 (517)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 356 (517)
..+.++++++.++ .+|..+ .+.++.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence 4567777777776 666554 357888888888888777777888888888888888887 45555566678888888
Q ss_pred ccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccc
Q 042271 357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG 436 (517)
Q Consensus 357 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 436 (517)
+++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 88888877666677788888888888888876666667788888888888888886666678888888888888888886
Q ss_pred cccccccCCCCccEEEccCCccccC
Q 042271 437 PIPIEFCQLNSLKILDLSNNSIFRT 461 (517)
Q Consensus 437 ~~~~~~~~~~~L~~L~l~~n~l~~~ 461 (517)
..+..+..+++|++|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6666788888888888888887554
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.8e-21 Score=179.97 Aligned_cols=202 Identities=19% Similarity=0.149 Sum_probs=119.7
Q ss_pred cccEEEccCCcccccCChhhh-hccCCCcEEEccCCcCCCCCc----hhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271 277 KLATLDVSNNFFRGHIPVEIG-TYLPGLMDLNLSRNAFNGSIP----SSFADMKMLERVDISYNQLTGEIPERMAARCFS 351 (517)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~ 351 (517)
+|++|++++|.+.+..+..+. ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .++...+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCC
Confidence 344444444444433333321 224455555555555443222 22234555555555555554 333333444555
Q ss_pred CcEEEccCCccccc--c--cccccCCCCCcEEEccCcccccccch---hhhhcccCCeEEecCCCCCCccchhhcCC---
Q 042271 352 LEILALSNNSLQGH--I--FSEKFNLTNLMTLQLDGNKFTGEILE---SLSKCYLLEGLYLSDNHLTGEIPRWLGNL--- 421 (517)
Q Consensus 352 L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--- 421 (517)
|++|++++|.+.+. . ...+..+++|++|++++|.++..... .+..+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 55555555554321 1 12234677788888888877532111 24667888888888888886656666665
Q ss_pred CCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCc
Q 042271 422 SALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEG 483 (517)
Q Consensus 422 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (517)
++|++|++++|++. .+|..+. ++|++|++++|++++. +....+++|++|++++|.+++
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence 68888888888888 4566553 7888888888888764 333447888888888888764
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.3e-20 Score=171.36 Aligned_cols=197 Identities=20% Similarity=0.272 Sum_probs=165.6
Q ss_pred hcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCc
Q 042271 249 ENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 328 (517)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 328 (517)
..+++|++|+++++.+... ..+..+++|+.|++++|.++ .++. + ..+++|++|++++|.+++. ..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~-~~~~-~-~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP-L-KNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCC-CChh-H-ccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4678999999999988664 35788999999999999997 4554 4 4489999999999999853 4688999999
Q ss_pred EEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCC
Q 042271 329 RVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN 408 (517)
Q Consensus 329 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 408 (517)
+|++++|.+. .++. +..+++|+.|++++|.+++... +..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 111 ~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 111 TLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp EEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 9999999998 4543 6679999999999999886543 7789999999999999985433 889999999999999
Q ss_pred CCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCC
Q 042271 409 HLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLP 463 (517)
Q Consensus 409 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 463 (517)
.+.+..+ +..+++|+.|++++|.+.+.. .+..+++|++|++++|++++...
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 9985443 888999999999999998654 37899999999999999966443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=3.4e-20 Score=161.92 Aligned_cols=179 Identities=22% Similarity=0.185 Sum_probs=93.0
Q ss_pred cEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccC
Q 042271 304 MDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDG 383 (517)
Q Consensus 304 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 383 (517)
+.++.+++.++. +|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+++.....+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 345555555542 22222 345666666666665 44444445556666666666655544444455555666666665
Q ss_pred cccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCC
Q 042271 384 NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLP 463 (517)
Q Consensus 384 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 463 (517)
|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 55554444445555555555555555554444445555555555555555554434445555555555555554422
Q ss_pred CCCCcccccEEEccCCcCCccchhhhcCC
Q 042271 464 SCFSPASIEQLHLSKNKIEGRLESIIHDS 492 (517)
Q Consensus 464 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 492 (517)
.++.|++|+++.|.+++.+|..+..+
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccc
Confidence 12345555555555555444444433
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.8e-19 Score=155.28 Aligned_cols=176 Identities=21% Similarity=0.198 Sum_probs=96.4
Q ss_pred cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271 279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS 358 (517)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 358 (517)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 34455555544 444333 335666666666655444444555666666666666555 4444444555566666666
Q ss_pred CCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccc
Q 042271 359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPI 438 (517)
Q Consensus 359 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 438 (517)
+|.+++.....+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence 665554444445556666666666666554444445555666666666666554444445556666666666664432
Q ss_pred cccccCCCCccEEEccCCccccCCCCCC
Q 042271 439 PIEFCQLNSLKILDLSNNSIFRTLPSCF 466 (517)
Q Consensus 439 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 466 (517)
.+++|+.|+++.|++++..+..+
T Consensus 163 -----~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp -----CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred -----CCCCHHHHHHHHHhCCceeeccC
Confidence 34455566666666555555443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=6e-19 Score=167.00 Aligned_cols=241 Identities=17% Similarity=0.111 Sum_probs=164.2
Q ss_pred ceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCC-chhhhcCCCCcE-Eec
Q 042271 255 ERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSI-PSSFADMKMLER-VDI 332 (517)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~-L~l 332 (517)
+.++.+++.++... ..+ .+++++|++++|.++ .++...+..+++|++|++++|.+.+.+ +.+|..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt~iP-~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIP-SDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCC-TTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccC-cCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666665442 222 357888888888887 677665555888888888888875443 346777777765 445
Q ss_pred cccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccC-cccccccchhhhhcc-cCCeEEecCCCC
Q 042271 333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDG-NKFTGEILESLSKCY-LLEGLYLSDNHL 410 (517)
Q Consensus 333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 410 (517)
.+|++. .++...+..+++|+.|++++|.+.......+....++..+++.+ +.+.......+..+. .++.|++++|++
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 556676 66666777788888888888888766655666667777888765 456544455555554 577888888888
Q ss_pred CCccchhhcCCCCCcEEECCC-CcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhh
Q 042271 411 TGEIPRWLGNLSALEDIIMPN-NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESII 489 (517)
Q Consensus 411 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 489 (517)
. .++.......+|+++++.+ |.+....+.+|.++++|++|++++|+++...+.. +.+|++|.+.++.--...| .+
T Consensus 167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCCCC-CT
T ss_pred c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCcCC-Cc
Confidence 7 4444444556788888875 5555444457788888888888888886654433 5677777776655333444 37
Q ss_pred cCCCcccEEECCCCc
Q 042271 490 HDSPHLVTLDLSCNS 504 (517)
Q Consensus 490 ~~~~~L~~l~l~~n~ 504 (517)
..+++|+.++++++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 778888888887543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.4e-18 Score=159.57 Aligned_cols=173 Identities=22% Similarity=0.273 Sum_probs=136.9
Q ss_pred cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL 379 (517)
Q Consensus 300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 379 (517)
+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+++. ..+..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 67899999999988744 357888999999999999884 444 66788999999999988763 347788999999
Q ss_pred EccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271 380 QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459 (517)
Q Consensus 380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 459 (517)
++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 9999988753 4677888899999999988754 567888889999999888886544 778888899999888886
Q ss_pred cCCCCCCCcccccEEEccCCcCCccch
Q 042271 460 RTLPSCFSPASIEQLHLSKNKIEGRLE 486 (517)
Q Consensus 460 ~~~~~~~~~~~L~~L~l~~n~~~~~~~ 486 (517)
+. +....+++|+.|++++|.++....
T Consensus 192 ~l-~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 192 DL-RALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp BC-GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred CC-hhhccCCCCCEEECcCCcccCCcc
Confidence 64 334447888888888888765443
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.4e-18 Score=172.86 Aligned_cols=186 Identities=25% Similarity=0.291 Sum_probs=107.2
Q ss_pred cccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEE
Q 042271 277 KLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILA 356 (517)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 356 (517)
+++.|+++++.++ .+|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+.+ +|. +. .+|+.|+
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~--~~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LP--ASLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CC--TTCCEEE
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hh--cCCCEEE
Confidence 6777777777776 355544 356777777777776 344 345677777777777663 554 21 1667777
Q ss_pred ccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccc
Q 042271 357 LSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEG 436 (517)
Q Consensus 357 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 436 (517)
+++|.+++.. . .+++|+.|++++|.++. .+. .+++|+.|++++|.+.+ +|. +. ++|+.|++++|.+.
T Consensus 127 Ls~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTMLP-E---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCCCC-C---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 7777666522 2 45666666666666653 222 34566666666666653 443 33 56666666666665
Q ss_pred cccccccCCCCc-------cEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcC
Q 042271 437 PIPIEFCQLNSL-------KILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHD 491 (517)
Q Consensus 437 ~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 491 (517)
.+|. +.. +| +.|++++|+++......+.+++|+.|++++|.+++..|..+..
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 3333 332 44 6666666666543333334556666666666665555555444
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=6.4e-19 Score=167.49 Aligned_cols=178 Identities=27% Similarity=0.203 Sum_probs=136.6
Q ss_pred cEEeccccccccccchhHHhhcCCCcEEEccCCccccccccccc-CCCCCcEEEccCcccccccchhhhhcccCCeEEec
Q 042271 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS 406 (517)
Q Consensus 328 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 406 (517)
+.++++++.+. .+|..+ .+.++.|++++|.+++.....+. .+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 45666666665 455433 23567777777777766655665 77888888888888876666677888888888888
Q ss_pred CCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCC----CcccccEEEccCCcCC
Q 042271 407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCF----SPASIEQLHLSKNKIE 482 (517)
Q Consensus 407 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~~~L~~L~l~~n~~~ 482 (517)
+|.+....+..|..+++|+.|++++|.+....+..|.++++|++|+|++|+++......+ .+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 888876556678888888888888888887777788888888899998888877665554 3789999999999998
Q ss_pred ccchhhhcCCCc--ccEEECCCCcCCCCC
Q 042271 483 GRLESIIHDSPH--LVTLDLSCNSLHGSI 509 (517)
Q Consensus 483 ~~~~~~l~~~~~--L~~l~l~~n~~~~~~ 509 (517)
...+..|..++. ++.|+|++|++.+.+
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 888888888887 488999999998765
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=2.2e-18 Score=163.14 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=176.3
Q ss_pred cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcE-EEc
Q 042271 279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEI-LAL 357 (517)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~-L~l 357 (517)
++++.++++++ .+|..+ ++++++|++++|.++...+.+|.++++|++|++++|.+.+.++...|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67888888888 888766 4689999999999996666789999999999999999987888888888888776 556
Q ss_pred cCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCC-CCCCccchhhcCCC-CCcEEECCCCccc
Q 042271 358 SNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDN-HLTGEIPRWLGNLS-ALEDIIMPNNNLE 435 (517)
Q Consensus 358 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 435 (517)
..|.+....+..|..+++|++|++++|.+....+..+....++..+++.++ .+....+..|..+. .++.|++++|++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 678888887888999999999999999998666666667778888998764 56644445666664 6889999999998
Q ss_pred ccccccccCCCCccEEEccC-CccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 436 GPIPIEFCQLNSLKILDLSN-NSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 436 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
...+..| ...+|+++++++ |.++.....++. +++|++|++++|.++..++..|.+++ .|.+.+++--..+|
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~---~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK---KLRARSTYNLKKLP 240 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC---EEECTTCTTCCCCC
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch---HhhhccCCCcCcCC
Confidence 5444444 567899999986 567665556655 89999999999999988777776554 44444443333555
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.7e-18 Score=149.21 Aligned_cols=155 Identities=22% Similarity=0.228 Sum_probs=76.7
Q ss_pred cEEeccccccccccchhHHhhcCCCcEEEccCCccccccc-ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEec
Q 042271 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIF-SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS 406 (517)
Q Consensus 328 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 406 (517)
+.++++++.+. .+|..+ .+.++.|++++|.++.... ..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35666666655 444432 2244555555555554322 234445555555555555544444444445555555555
Q ss_pred CCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccch
Q 042271 407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLE 486 (517)
Q Consensus 407 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 486 (517)
+|.+.+..+..|..+++|++|++++|.+.+..+..|..+ ++|++|++++|.+++..+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----------------------~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL-----------------------SSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC-----------------------TTCSEEECTTSCCCCBCT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC-----------------------ccCCEEECCCCcCCEECH
Confidence 555444444444444444444444444444334444444 555555555555555545
Q ss_pred hhhcCCCcccEEECCCCcCCCCC
Q 042271 487 SIIHDSPHLVTLDLSCNSLHGSI 509 (517)
Q Consensus 487 ~~l~~~~~L~~l~l~~n~~~~~~ 509 (517)
..|..+++|++|++++|++++.+
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEECSG
T ss_pred HHhcCCCCCCEEEecCcCCcCCC
Confidence 55555555555555555555444
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4e-18 Score=149.67 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=91.0
Q ss_pred cEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecC
Q 042271 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSD 407 (517)
Q Consensus 328 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 407 (517)
+.++++++.+. .+|..+ .++++.|++++|.+.......+..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 46677777666 555433 24667777777766665555666666666666666666655566666666666666666
Q ss_pred CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcC
Q 042271 408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKI 481 (517)
Q Consensus 408 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~ 481 (517)
|.+....+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|++++..+..+. +++|++|++++|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666644444455666666666666666655555565666666666666665555444333 45555555555554
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=4.8e-18 Score=156.10 Aligned_cols=193 Identities=22% Similarity=0.329 Sum_probs=157.6
Q ss_pred ccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEec
Q 042271 253 NLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDI 332 (517)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 332 (517)
++..+.+....+.+. .....+++|+.|++++|.+. .++. +. .+++|++|++++|.+++..+ +..+++|++|++
T Consensus 25 ~~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHHhcCCCcccc--cchhhcCcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 344445555554433 23456789999999999987 5543 33 38999999999999986543 899999999999
Q ss_pred cccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCC
Q 042271 333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG 412 (517)
Q Consensus 333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 412 (517)
++|.+. .++. +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 98 ~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 98 DENKVK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCcCC-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 999988 4443 66799999999999999874 4678899999999999999864 678899999999999999986
Q ss_pred ccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCC
Q 042271 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLP 463 (517)
Q Consensus 413 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 463 (517)
..+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|+++....
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred chh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence 544 89999999999999999863 3 48899999999999999866443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2.4e-18 Score=173.09 Aligned_cols=203 Identities=18% Similarity=0.219 Sum_probs=156.7
Q ss_pred CcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271 276 QKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL 355 (517)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 355 (517)
..+..+.+..+.+.+..+. ..++.|+.|++++|.+... + .+..+++|+.|++++|.+.+ ++. +..+++|+.|
T Consensus 21 ~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEE
T ss_pred HHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEE
Confidence 3455566666666533332 2378999999999998743 3 68889999999999999884 443 6678999999
Q ss_pred EccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccc
Q 042271 356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE 435 (517)
Q Consensus 356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 435 (517)
++++|.+.+. ..+..+++|+.|++++|.+.+ ...+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCCC--hhhccCCCCCEEEecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 9999988763 367789999999999999875 34688899999999999998854 57888999999999999998
Q ss_pred ccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcc
Q 042271 436 GPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHL 495 (517)
Q Consensus 436 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 495 (517)
+..+ +..+++|++|+|++|++++. +....+++|+.|++++|.+...+...+..+..+
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~ 223 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEE
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCCcccccccEEec
Confidence 6555 88899999999999998664 444448899999999998876544444433333
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.1e-17 Score=147.91 Aligned_cols=137 Identities=20% Similarity=0.134 Sum_probs=71.2
Q ss_pred CCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEc
Q 042271 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL 453 (517)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 453 (517)
++|++|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44445555555444444444445555555555555554333344455555555555555555444444555555555555
Q ss_pred cCCccccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 454 SNNSIFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 454 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
++|+++........+++|++|++++|.+++..+..|..+++|++|++++|++++.++
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 555554332222235555555665555555555555666666666666666655543
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=4.3e-18 Score=171.26 Aligned_cols=195 Identities=22% Similarity=0.324 Sum_probs=161.5
Q ss_pred cccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEe
Q 042271 252 ANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVD 331 (517)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 331 (517)
..+..+.+....+.+. .....+++|+.|+++++.+. .++. +. .+++|+.|+|++|.+.+..+ +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCC-CCTT-GG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccc--cchhcCCCCCEEECcCCCCC-CChH-Hc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 4455666666665544 23567889999999999987 5553 33 48999999999999986544 89999999999
Q ss_pred ccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCC
Q 042271 332 ISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLT 411 (517)
Q Consensus 332 l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 411 (517)
+++|.+. .++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 94 Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 94 LDENKIK-DLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCSSCCC-CCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CcCCCCC-CCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 9999998 444 356799999999999999864 4688999999999999999864 67889999999999999999
Q ss_pred CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCC
Q 042271 412 GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPS 464 (517)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 464 (517)
+..| +..+++|+.|++++|.+.+. ..+..+++|+.|+|++|++++....
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence 6655 89999999999999999864 4688999999999999999775443
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5.5e-18 Score=146.30 Aligned_cols=151 Identities=19% Similarity=0.181 Sum_probs=89.8
Q ss_pred cCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEE
Q 042271 349 CFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDII 428 (517)
Q Consensus 349 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 428 (517)
+++|+.|++++|.+.+.. .+..+++|++|++++|.+.. ...+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 334455555554444221 34455555555555554432 23455666666666666666654555666666777777
Q ss_pred CCCCcccccccccccCCCCccEEEccCCc-cccCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCC
Q 042271 429 MPNNNLEGPIPIEFCQLNSLKILDLSNNS-IFRTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLH 506 (517)
Q Consensus 429 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~ 506 (517)
+++|.+.+..+..+..+++|++|++++|+ ++. .+....+++|++|++++|.+++.. .+..+++|++|++++|+|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 77776665556666677777777777776 433 333333677777777777776543 5677778888888888775
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=3.1e-17 Score=143.95 Aligned_cols=152 Identities=22% Similarity=0.229 Sum_probs=80.4
Q ss_pred cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCc-hhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEc
Q 042271 279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIP-SSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILAL 357 (517)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l 357 (517)
+.++++++.++ .+|..+ .+.+++|++++|.+++..+ ..|..+++|++|++++|.+.
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~------------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT------------------- 70 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-------------------
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-------------------
Confidence 35666666554 445433 2344555555555553322 23445555555555555544
Q ss_pred cCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccc
Q 042271 358 SNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGP 437 (517)
Q Consensus 358 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 437 (517)
+.....+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 71 ------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 71 ------DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp ------EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred ------EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 43333444555555555555555544444455555555555555555544455555555555555555555554
Q ss_pred ccccccCCCCccEEEccCCccc
Q 042271 438 IPIEFCQLNSLKILDLSNNSIF 459 (517)
Q Consensus 438 ~~~~~~~~~~L~~L~l~~n~l~ 459 (517)
.+..|..+++|++|++++|++.
T Consensus 145 ~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTTTTTCTTCCEEECCSCCEE
T ss_pred CHHHhcCCCCCCEEEecCcCCc
Confidence 4555555666666666666554
No 110
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=9.7e-18 Score=157.33 Aligned_cols=196 Identities=14% Similarity=0.068 Sum_probs=127.8
Q ss_pred cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcc----cccccccccCCCC
Q 042271 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSL----QGHIFSEKFNLTN 375 (517)
Q Consensus 300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~----~~~~~~~~~~~~~ 375 (517)
+++|+.+++.+ .++.....+|.+|++|+.+++.+|.+. .++...|.++.++..+....... ..+...+|..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56666666655 555444555666666666666666555 45555555555444444433211 1111222333333
Q ss_pred C--------------------------cEEEccCcccccccchhh-hhcccCCeEEecCCCCCCccchhhcCCCCCcEEE
Q 042271 376 L--------------------------MTLQLDGNKFTGEILESL-SKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDII 428 (517)
Q Consensus 376 L--------------------------~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 428 (517)
| ..+.+.+.-.. .....+ ..|++|+.+++.+|.+......+|.+|.+|++++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 3 34444333211 111122 2478899999999888866677899999999999
Q ss_pred CCCCcccccccccccCCCCcc-EEEccCCccccCCCCCCC-cccccEEEccCCcCCccchhhhcCCCcccEEEC
Q 042271 429 MPNNNLEGPIPIEFCQLNSLK-ILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEGRLESIIHDSPHLVTLDL 500 (517)
Q Consensus 429 l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l 500 (517)
+.++ +..+.+.+|.++++|+ .+++.+ +++.+...+|. +++|++|++++|.++.+.+.+|.+|++|+++..
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9887 6656677899999998 999988 67677777776 889999999999998888889999999998853
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=4.4e-17 Score=143.01 Aligned_cols=151 Identities=24% Similarity=0.271 Sum_probs=78.0
Q ss_pred cEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEcc
Q 042271 279 ATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALS 358 (517)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 358 (517)
+.++++++.++ .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+. .+....+.++++|+.|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence 45666666665 555543 246666666666666555555666666666666666655 3333334445555555555
Q ss_pred CCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcc
Q 042271 359 NNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNL 434 (517)
Q Consensus 359 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 434 (517)
+|.++......|..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5555544333444445555555555554444444444444444444444444433333344444444444444443
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=4.9e-17 Score=140.29 Aligned_cols=150 Identities=16% Similarity=0.176 Sum_probs=93.8
Q ss_pred cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL 379 (517)
Q Consensus 300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 379 (517)
+++|+.|++++|.++ .++ .+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 556667777766666 333 4666677777777776554 222 23446667777777766665555566667777777
Q ss_pred EccCcccccccchhhhhcccCCeEEecCCC-CCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcc
Q 042271 380 QLDGNKFTGEILESLSKCYLLEGLYLSDNH-LTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458 (517)
Q Consensus 380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 458 (517)
++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 777777765556666677777777777776 44 333 46666666666666666664 22 555666666666666665
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=1.8e-17 Score=157.48 Aligned_cols=156 Identities=28% Similarity=0.233 Sum_probs=72.4
Q ss_pred cccEEEccCCcccccCChhhhh-ccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEE
Q 042271 277 KLATLDVSNNFFRGHIPVEIGT-YLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEIL 355 (517)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 355 (517)
.++.|++++|.++ .++...+. .+++|+.|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|
T Consensus 40 ~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEE
Confidence 3455555555554 22222221 2455555555555555444444555555555555555544 3444444445555555
Q ss_pred EccCCcccccccccccCCCCCcEEEccCcccccccchhh---hhcccCCeEEecCCCCCCccchhhcCCCC--CcEEECC
Q 042271 356 ALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESL---SKCYLLEGLYLSDNHLTGEIPRWLGNLSA--LEDIIMP 430 (517)
Q Consensus 356 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~ 430 (517)
++++|.+....+..|..+++|+.|++++|.+.......+ ..+++|+.|++++|.+....+..+..++. ++.|++.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 555555544444444455555555555555543322222 33445555555555554333334444443 2444555
Q ss_pred CCcc
Q 042271 431 NNNL 434 (517)
Q Consensus 431 ~~~~ 434 (517)
+|.+
T Consensus 198 ~N~~ 201 (361)
T 2xot_A 198 NNPL 201 (361)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 4444
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=9.1e-18 Score=157.49 Aligned_cols=293 Identities=15% Similarity=0.178 Sum_probs=177.8
Q ss_pred CCCcceEEeccccccCCcchhhhhh-cccCcEEEecCCccc--CCccccccCCCCCcEEEccCCccCCCCCcchhc----
Q 042271 30 SKPSLKFLSLINSSKNTILDQGLRQ-LVHLQELYIGGYDLR--GSLPWCLANMTSLQVLYASSNELTGNISPGLCE---- 102 (517)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~---- 102 (517)
.++++++|.+++.. .......+.. +++|++|+|++|++. ..... .++.++.+.+..+.+. ...|.+
T Consensus 23 ~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETT
T ss_pred hhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccc
Confidence 46688999998542 2112223444 678999999999987 22222 2233556666666444 245677
Q ss_pred ----cccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCc
Q 042271 103 ----LVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNL 178 (517)
Q Consensus 103 ----l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 178 (517)
+++|+.+++.+ .++.+.+.+|.+|++|+++++.++.+.. ++...|..+.++..+...........
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~--------- 164 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFK--------- 164 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTS---------
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhcc---------
Confidence 99999999999 8886777889999999999999998864 66668888877777766542200000
Q ss_pred ccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccCCcC-EeeccCCcCCCCCChhhhhcccccceE
Q 042271 179 SKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQHDLK-NADLSHLNLSGKFPNWLVENNANLERL 257 (517)
Q Consensus 179 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~L~~L 257 (517)
.. .....+..+..++ .+.+... +.++..++...
T Consensus 165 ~~-------------------------------------i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~------ 198 (329)
T 3sb4_A 165 NR-------------------------------------WEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAG------ 198 (329)
T ss_dssp TT-------------------------------------TTTSCEEESCCCEEEEEECTT---CCHHHHHHHTT------
T ss_pred cc-------------------------------------ccccccccccccceeEEecCC---CcHHHHHhhcc------
Confidence 00 0000111222222 1111111 01111111110
Q ss_pred eccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccc
Q 042271 258 LLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQL 337 (517)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i 337 (517)
....++..+.+.+.-.. .....+...+++|+.+++++|.++.....+|.+|++|+++++.++ +
T Consensus 199 ---------------~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i 261 (329)
T 3sb4_A 199 ---------------LQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L 261 (329)
T ss_dssp ---------------CCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred ---------------cCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence 01123333444332111 111122223677888888777777666667778888888888776 5
Q ss_pred ccccchhHHhhcCCCc-EEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEe
Q 042271 338 TGEIPERMAARCFSLE-ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYL 405 (517)
Q Consensus 338 ~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 405 (517)
. .++...|.+|++|+ .+.+.+ .++.....+|.+|++|+.+++.++.+..+...+|.+|++|+.++.
T Consensus 262 ~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 262 K-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp C-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred c-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 4 67777777788887 888877 666666677888888888888777777677777888888887764
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=6.2e-17 Score=160.99 Aligned_cols=179 Identities=24% Similarity=0.258 Sum_probs=87.0
Q ss_pred ccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEec
Q 042271 253 NLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDI 332 (517)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 332 (517)
+++.|+++++.+.+. +..+ +++|+.|++++|.++ .+| ..+++|+.|++++|.+++ ++. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 555555555555442 1111 245555555555554 444 114555555555555553 333 322 5555555
Q ss_pred cccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCC
Q 042271 333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTG 412 (517)
Q Consensus 333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 412 (517)
++|.+.+ +|. .+++|+.|++++|.+++... .+++|++|++++|.++. .+. +. ++|+.|++++|.+.
T Consensus 128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSSCCSC-CCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCcCCC-CCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 5555552 443 24555555555555544221 34555555555555543 222 32 45555555555555
Q ss_pred ccchhhcCCCCC-------cEEECCCCcccccccccccCCCCccEEEccCCccccC
Q 042271 413 EIPRWLGNLSAL-------EDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT 461 (517)
Q Consensus 413 ~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 461 (517)
.+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|++++.
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 3333 322 44 55555555555 3444444455555555555555443
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.2e-17 Score=151.00 Aligned_cols=172 Identities=21% Similarity=0.224 Sum_probs=137.8
Q ss_pred cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL 379 (517)
Q Consensus 300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 379 (517)
+.++..++++++.+++.. .+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+++... +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 456788889999887433 6788999999999999987 555 35568999999999999887554 8889999999
Q ss_pred EccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccc
Q 042271 380 QLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIF 459 (517)
Q Consensus 380 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 459 (517)
++++|.+.+... +.. ++|+.|++++|.+.+ ++ .+..+++|+.|++++|++.+. + .+..+++|++|++++|+++
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999875322 233 889999999999884 33 588899999999999999864 3 6788899999999999997
Q ss_pred cCCCCCCCcccccEEEccCCcCCccch
Q 042271 460 RTLPSCFSPASIEQLHLSKNKIEGRLE 486 (517)
Q Consensus 460 ~~~~~~~~~~~L~~L~l~~n~~~~~~~ 486 (517)
+. .....+++|+.|++++|.++....
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 76 444448899999999998876543
No 117
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.70 E-value=4.8e-16 Score=149.59 Aligned_cols=335 Identities=13% Similarity=0.077 Sum_probs=156.0
Q ss_pred cCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCccccc
Q 042271 44 KNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLC 123 (517)
Q Consensus 44 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 123 (517)
+..+...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.++++.+ +......+|..+.+|+.+.+..+ +..+...+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 45566667777777777777543 55455667777777777777654 44333456667777777666544 23244455
Q ss_pred ccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcc
Q 042271 124 LANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKF 203 (517)
Q Consensus 124 ~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 203 (517)
|..+..++........ .+....|..|++|+.+.+..+.. . .....+..+..|+.+
T Consensus 136 F~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~-~--I~~~~F~~c~~L~~i------------------- 190 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSME-T--LHNGLFSGCGKLKSI------------------- 190 (394)
T ss_dssp TTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTCC-E--ECTTTTTTCTTCCBC-------------------
T ss_pred eecccccccccCcccc---ccchhhhcccCCCcEEecCCccc-e--eccccccCCCCceEE-------------------
Confidence 6665444333322222 23334577777777777654321 0 111122222222222
Q ss_pred eeeEeeccccccCCCccccccccCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEc
Q 042271 204 QLTFISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDV 283 (517)
Q Consensus 204 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (517)
.+..+ +. .++...+..+..|+.+.+..+... .......+..|+.+.+
T Consensus 191 -----------------------------~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 191 -----------------------------KLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIII 237 (394)
T ss_dssp -----------------------------CCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEE
T ss_pred -----------------------------EcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCCCceEEE
Confidence 22111 00 111111223333333333222110 0011122234444444
Q ss_pred cCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCccc
Q 042271 284 SNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQ 363 (517)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~ 363 (517)
.... + .+....+..+..++.+.+..+... ....++..+..++.+...... ++...+..+.+|+.+.+..+ +.
T Consensus 238 p~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 238 PDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VK 309 (394)
T ss_dssp CTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CC
T ss_pred CCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-cc
Confidence 3321 1 222222333555555555544322 333455555555555554432 23344445556666665443 33
Q ss_pred ccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccccccc
Q 042271 364 GHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443 (517)
Q Consensus 364 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 443 (517)
.....+|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+.+..+ +......+|.+|.+|+.+++..+-- ....+|.
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~--~~~~~F~ 385 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLE--QYRYDFE 385 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGG--GGGGGBC
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCE--Ehhheec
Confidence 333445555666666655433 33344455556666666665544 3333445555555566555543311 1223455
Q ss_pred CCCCccEE
Q 042271 444 QLNSLKIL 451 (517)
Q Consensus 444 ~~~~L~~L 451 (517)
++++|+.+
T Consensus 386 ~c~~L~~I 393 (394)
T 4fs7_A 386 DTTKFKWI 393 (394)
T ss_dssp TTCEEEEE
T ss_pred CCCCCcEE
Confidence 55555543
No 118
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=4.1e-16 Score=150.05 Aligned_cols=334 Identities=13% Similarity=0.064 Sum_probs=187.0
Q ss_pred ccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCcccccccCCCCCcEEeccCCccccccCCC
Q 042271 68 LRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSS 147 (517)
Q Consensus 68 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 147 (517)
++.+...+|.+|.+|+.+.++.+ ++.....+|.++.+|+.+++..+ ++.+...+|.++++|+.+.+..+ +. .+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence 55566788999999999999865 66555678999999999999865 55455678999999998877654 22 24444
Q ss_pred cccCCCCCceeecccCCCCCCCCCcccccCcccccccccccccccccccCCCCCcceeeEeeccccccCCCccccccccC
Q 042271 148 PLMHLTSIEELILSNNHFFQSPISLEPLFNLSKRKTFDSEICAETESHYNSLTPKFQLTFISLSGYIDGGTFPKFLYHQH 227 (517)
Q Consensus 148 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 227 (517)
.|..+..+......... ......+..+.
T Consensus 135 aF~~~~~~~~~~~~~~~----------------------------------------------------~i~~~aF~~c~ 162 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVT----------------------------------------------------VIGDEAFATCE 162 (394)
T ss_dssp TTTTCCCSEEECCTTCC----------------------------------------------------EECTTTTTTCT
T ss_pred eeecccccccccCcccc----------------------------------------------------ccchhhhcccC
Confidence 56655432222211110 00012334455
Q ss_pred CcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEE
Q 042271 228 DLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLN 307 (517)
Q Consensus 228 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 307 (517)
+|+.+.+.... . .++...+.++.+|+.+.+..+ +......++..+..|+.+.+..+... +...
T Consensus 163 ~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~------------ 225 (394)
T 4fs7_A 163 SLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDF------------ 225 (394)
T ss_dssp TCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTT------------
T ss_pred CCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehh------------
Confidence 56655554321 1 233333455666666666543 22222334445555555544433211 1111
Q ss_pred ccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc
Q 042271 308 LSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT 387 (517)
Q Consensus 308 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (517)
...+.+|+.+.+.... . .+....+.++..++.+.+..+.. ......|..++.++.+......+.
T Consensus 226 -------------~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~ 289 (394)
T 4fs7_A 226 -------------ALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP 289 (394)
T ss_dssp -------------TTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC
T ss_pred -------------hcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec
Confidence 1222344444443221 1 23333344455555555544321 233344555666666655544332
Q ss_pred cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC
Q 042271 388 GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS 467 (517)
Q Consensus 388 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 467 (517)
...+..|.+|+.+.+.++ +......+|.+|.+|+.+++.++ +..+...+|.+|.+|+.+++..+ ++.+...+|.
T Consensus 290 ---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 290 ---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp ---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred ---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 345666667777776554 44344566777777777777644 44344567777777777777665 5555566665
Q ss_pred -cccccEEEccCCcCCccchhhhcCCCcccEE
Q 042271 468 -PASIEQLHLSKNKIEGRLESIIHDSPHLVTL 498 (517)
Q Consensus 468 -~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l 498 (517)
+.+|+++++..+ ++ ....+|.+|++|+.+
T Consensus 364 ~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 364 GCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 677888877654 22 234678888888875
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=2.8e-16 Score=138.85 Aligned_cols=152 Identities=23% Similarity=0.217 Sum_probs=107.5
Q ss_pred ccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEc
Q 042271 278 LATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILAL 357 (517)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l 357 (517)
-+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEEC
Confidence 456777777665 666544 367888888888888777777888888888888888876 666666666777777777
Q ss_pred cCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccc
Q 042271 358 SNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLE 435 (517)
Q Consensus 358 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 435 (517)
++|.++......+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777777655555667777777777777776 44556666777777777777776544455666666666666666665
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.7e-17 Score=148.58 Aligned_cols=173 Identities=20% Similarity=0.225 Sum_probs=144.1
Q ss_pred cCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCc
Q 042271 274 SHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLE 353 (517)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 353 (517)
.+.++..++++++.++ .++ .+. .+++|+.|++++|.++. ++ .+..+++|++|++++|.+. .++. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~-~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQK-ELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHH-HHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCcc-ccc-chh-hcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence 4557788889998887 444 233 38899999999999984 44 7889999999999999998 4554 67799999
Q ss_pred EEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCc
Q 042271 354 ILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNN 433 (517)
Q Consensus 354 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (517)
.|++++|.+++... +.. ++|++|++++|.+.+. ..+..+++|+.|++++|++.+. + .+..+++|+.|++++|.
T Consensus 89 ~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 89 ELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSC
T ss_pred EEECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCc
Confidence 99999999986432 223 9999999999999853 4688999999999999999854 4 68899999999999999
Q ss_pred ccccccccccCCCCccEEEccCCccccCCC
Q 042271 434 LEGPIPIEFCQLNSLKILDLSNNSIFRTLP 463 (517)
Q Consensus 434 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 463 (517)
+.+. ..+..+++|+.|++++|+++....
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred Ccch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 9865 678899999999999999976543
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=7e-16 Score=147.52 Aligned_cols=265 Identities=14% Similarity=0.155 Sum_probs=169.0
Q ss_pred cCCcCEeeccCCcCCCCCChhhhhcccccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcE
Q 042271 226 QHDLKNADLSHLNLSGKFPNWLVENNANLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMD 305 (517)
Q Consensus 226 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 305 (517)
+..++.+.+... +. .++...+.++ +|+.+.+..+ +......+|..+ +|+.+.+.. .+. .+....+..|++|+.
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 355666666442 22 2222223343 6777777655 444444455554 577777775 444 455555555777888
Q ss_pred EEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcc
Q 042271 306 LNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNK 385 (517)
Q Consensus 306 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 385 (517)
+++.++.++.....+|. +.+|+.+.+..+ +. .++...|.+|++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 88877777655555555 577777777644 44 666777777777888877764 44445555655 677777774 33
Q ss_pred cccccchhhhhcccCCeEEecCCCCC-----CccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccc
Q 042271 386 FTGEILESLSKCYLLEGLYLSDNHLT-----GEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFR 460 (517)
Q Consensus 386 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 460 (517)
+..+...+|.+|++|+.+.+.++.+. .....+|.+|++|+.+.+.+ .+..+...+|.+|.+|+.++|..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 44455677777888888887776553 24456777778888887774 355455667777778888887544 555
Q ss_pred CCCCCCCcccccEEEccCCcCCccchhhhcCCC-cccEEECCCCcC
Q 042271 461 TLPSCFSPASIEQLHLSKNKIEGRLESIIHDSP-HLVTLDLSCNSL 505 (517)
Q Consensus 461 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~l~l~~n~~ 505 (517)
+...+|...+|+++++.+|.+....+..|.+++ +++.+.+..+.+
T Consensus 337 I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 566666622788888877777666666777774 677777766543
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=2.3e-15 Score=143.88 Aligned_cols=216 Identities=13% Similarity=0.142 Sum_probs=94.3
Q ss_pred ccceEeccCCccCCCcccccccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEec
Q 042271 253 NLERLLLADNSLFGSFWMPIHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDI 332 (517)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 332 (517)
+|+.+.+.. .+......+|..|++|+.+++..+.++ .++...+. +.+|+.+.+..+ +......+|..|++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 345554443 233333334444555555555544444 34444333 345555555422 33333444555555555555
Q ss_pred cccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccc-----cccchhhhhcccCCeEEecC
Q 042271 333 SYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFT-----GEILESLSKCYLLEGLYLSD 407 (517)
Q Consensus 333 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~ 407 (517)
..+ +. .+....|.+ .+|+.+.+. +.+......+|.+|++|+.+++.++.+. .+...+|.+|++|+.+.+.+
T Consensus 234 ~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 234 PEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 442 22 344444443 345555552 2233333344445555555555444332 23334445555555555542
Q ss_pred CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-c-ccccEEEccCC
Q 042271 408 NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-P-ASIEQLHLSKN 479 (517)
Q Consensus 408 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~-~~L~~L~l~~n 479 (517)
.+......+|.+|.+|+.+.+..+ +..+...+|.++ +|+.+++++|.........+. + ..++.|++..+
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred -ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 233333344555555555555333 222333444444 555555555444333333333 1 34444444443
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=1.9e-17 Score=165.57 Aligned_cols=203 Identities=20% Similarity=0.189 Sum_probs=106.1
Q ss_pred ccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCc-------------CCCCCchhhhcCCCCcEEe-ccccccc
Q 042271 273 HSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNA-------------FNGSIPSSFADMKMLERVD-ISYNQLT 338 (517)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------i~~~~~~~~~~l~~L~~L~-l~~~~i~ 338 (517)
..++.|+.|++++|.++ .+|..+.. +++|+.|++++|. ..+..+..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34556666666666665 56666655 6666666665443 2334455556666666666 4444332
Q ss_pred cccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhh
Q 042271 339 GEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWL 418 (517)
Q Consensus 339 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 418 (517)
.++ .+.+.+|.+.... ...|+.|++++|.+++ .+. +..+++|+.|++++|.+. .+|..+
T Consensus 424 -~L~-----------~l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~ 482 (567)
T 1dce_A 424 -DLR-----------SKFLLENSVLKME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL 482 (567)
T ss_dssp -HHH-----------HHHHHHHHHHHHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred -hhh-----------hhhhhcccccccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh
Confidence 111 1111122221110 1235555555555553 233 555556666666666655 455555
Q ss_pred cCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCC-CCCCC-cccccEEEccCCcCCccch---hhhcCCC
Q 042271 419 GNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTL-PSCFS-PASIEQLHLSKNKIEGRLE---SIIHDSP 493 (517)
Q Consensus 419 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~-~~~L~~L~l~~n~~~~~~~---~~l~~~~ 493 (517)
..+++|+.|++++|.+.+ +| .+..+++|+.|++++|++++.. +..+. +++|+.|++++|.+++.++ ..+..+|
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 666666666666666654 34 5555666666666666665543 33333 5666666666666654433 2344466
Q ss_pred cccEEEC
Q 042271 494 HLVTLDL 500 (517)
Q Consensus 494 ~L~~l~l 500 (517)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 6766653
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=5.2e-16 Score=130.25 Aligned_cols=138 Identities=22% Similarity=0.182 Sum_probs=95.6
Q ss_pred CCCCcEEEccCcccc-cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEE
Q 042271 373 LTNLMTLQLDGNKFT-GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKIL 451 (517)
Q Consensus 373 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 451 (517)
.++|++|++++|.+. +..+..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 456666666666665 33444556667777777777776643 556677777777777777775566666667777788
Q ss_pred EccCCccccCC--CCCCCcccccEEEccCCcCCccch---hhhcCCCcccEEECCCCcCCCCCCccc
Q 042271 452 DLSNNSIFRTL--PSCFSPASIEQLHLSKNKIEGRLE---SIIHDSPHLVTLDLSCNSLHGSIPNQI 513 (517)
Q Consensus 452 ~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~l~l~~n~~~~~~~~~~ 513 (517)
++++|++++.. .....+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|..-
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence 88777776643 233336788888888888876665 57888899999999999887 555543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=8.2e-16 Score=131.83 Aligned_cols=128 Identities=22% Similarity=0.266 Sum_probs=78.7
Q ss_pred cEEEccCCcccccccccccCCCCCcEEEccCcccccccch-hhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271 353 EILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILE-SLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431 (517)
Q Consensus 353 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 431 (517)
+.++++++.++... ..+ .+++++|++++|.+....+. .+..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677776665332 222 23667777777766644432 356666677777777766655566666666666666666
Q ss_pred CcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCCcCCc
Q 042271 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKNKIEG 483 (517)
Q Consensus 432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~ 483 (517)
|++.+..+..|.++++|++|++++|++++..+..+. +++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 666655555566666666666666666655555444 5666666666666654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=2.3e-15 Score=126.26 Aligned_cols=135 Identities=21% Similarity=0.182 Sum_probs=114.3
Q ss_pred CCCCcceEEeccccccC--CcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccC
Q 042271 29 ESKPSLKFLSLINSSKN--TILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM 106 (517)
Q Consensus 29 ~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 106 (517)
...+.|++|+++++.+. .++. .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 45678999999988887 7765 678999999999999999855 778899999999999999997678777889999
Q ss_pred cEEEccccccCCcc-cccccCCCCCcEEeccCCccccccCC---CcccCCCCCceeecccCCCCC
Q 042271 107 RELHIDNNDLRGSL-PLCLANLTSLRVLDVSDNQLTQNISS---SPLMHLTSIEELILSNNHFFQ 167 (517)
Q Consensus 107 ~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~ 167 (517)
++|++++|.+++.. +..+..+++|++|++++|.+.+ .+. ..+..+++|++|++++|.+..
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999999998642 2788999999999999999975 443 367889999999999997533
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=127.92 Aligned_cols=109 Identities=28% Similarity=0.319 Sum_probs=54.6
Q ss_pred cCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEcc
Q 042271 399 LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLS 477 (517)
Q Consensus 399 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~ 477 (517)
++++|++++|.+. .+|..+..+++|+.|++++|.+.+..+.+|.++++|++|++++|+++...+..+. +++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4444444444444 3334444445555555555555444444455555555555555555444443333 4555555555
Q ss_pred CCcCCccchhhhcCCCcccEEECCCCcCCCC
Q 042271 478 KNKIEGRLESIIHDSPHLVTLDLSCNSLHGS 508 (517)
Q Consensus 478 ~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~ 508 (517)
+|.++...+..|..+++|+.|++++|++++.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 5555544444555555555555555555443
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=6.7e-16 Score=132.37 Aligned_cols=130 Identities=25% Similarity=0.296 Sum_probs=86.6
Q ss_pred cEEeccccccccccchhHHhhcCCCcEEEccCCcccccccc-cccCCCCCcEEEccCcccccccchhhhhcccCCeEEec
Q 042271 328 ERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFS-EKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLS 406 (517)
Q Consensus 328 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 406 (517)
+.++++++.+. .+|..+. ++++.|++++|.+.+.... .+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45566666554 4554332 2566666666666554432 35666777777777777766666667777777777777
Q ss_pred CCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccC
Q 042271 407 DNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRT 461 (517)
Q Consensus 407 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 461 (517)
+|.+.+..+..|..+++|++|++++|++.+..+..|..+++|++|++++|+++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 7777765666677777777777777777766677777777888888888777544
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=4.8e-17 Score=162.73 Aligned_cols=194 Identities=19% Similarity=0.158 Sum_probs=138.9
Q ss_pred cCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEE
Q 042271 300 LPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTL 379 (517)
Q Consensus 300 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 379 (517)
++.|+.|++++|.++ .+|..+..+++|+.|++++|......+.... .+...+..+..+..+++|+.|
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------------~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR------------ALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------HHCTGGGHHHHHHHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHH------------hcccccCCHHHHHHHHhcccC
Confidence 567778888888776 5677777888888888765532111111000 001122233344455555555
Q ss_pred E-ccCcccccccc-----hhhhh--cccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEE
Q 042271 380 Q-LDGNKFTGEIL-----ESLSK--CYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKIL 451 (517)
Q Consensus 380 ~-l~~~~~~~~~~-----~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 451 (517)
+ ++.+.+..... ..+.. ...|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..+..+++|+.|
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 491 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEE
Confidence 5 44443321110 01111 2369999999999985 676 999999999999999999 678899999999999
Q ss_pred EccCCccccCCCCCCCcccccEEEccCCcCCccc-hhhhcCCCcccEEECCCCcCCCCCC
Q 042271 452 DLSNNSIFRTLPSCFSPASIEQLHLSKNKIEGRL-ESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 452 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
++++|++++. +....+++|++|++++|.+++.. |..|..+++|+.|++++|++++.+|
T Consensus 492 ~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 492 QASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp ECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ECCCCCCCCC-cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999999874 45445899999999999999887 8999999999999999999996655
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1e-15 Score=125.60 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=100.1
Q ss_pred CCCCcceEEeccccccC--CcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccC
Q 042271 29 ESKPSLKFLSLINSSKN--TILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM 106 (517)
Q Consensus 29 ~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 106 (517)
...++|++|+++++.+. .++. .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 34577888888877776 5554 677888888888888888754 677888888888888888886577777778888
Q ss_pred cEEEccccccCCc-ccccccCCCCCcEEeccCCccccccCC---CcccCCCCCceeecc
Q 042271 107 RELHIDNNDLRGS-LPLCLANLTSLRVLDVSDNQLTQNISS---SPLMHLTSIEELILS 161 (517)
Q Consensus 107 ~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~l~~l~~L~~L~l~ 161 (517)
++|++++|.+++. .+..+..+++|++|++++|.+.+ .+. ..+..+++|++|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence 8888888888753 34778888888888888888865 333 357778888888875
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=6.1e-15 Score=124.78 Aligned_cols=113 Identities=21% Similarity=0.244 Sum_probs=67.7
Q ss_pred ccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEc
Q 042271 398 YLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHL 476 (517)
Q Consensus 398 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l 476 (517)
++|+.|++++|++.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+. +++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 3556666666655544444455566666666666666544444555666666666666666555544433 566666666
Q ss_pred cCCcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 477 SKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 477 ~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
++|.+++.++..|..+++|++|++++|++++.+|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6666665555566666666666666666665554
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.1e-15 Score=123.69 Aligned_cols=125 Identities=21% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCcEEEccCcccc-cccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEc
Q 042271 375 NLMTLQLDGNKFT-GEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDL 453 (517)
Q Consensus 375 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 453 (517)
+++.|++++|.+. +..+..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444433 22233334444444444444444422 33444444555555555444334444444555555555
Q ss_pred cCCccccCC--CCCCCcccccEEEccCCcCCccch---hhhcCCCcccEEECC
Q 042271 454 SNNSIFRTL--PSCFSPASIEQLHLSKNKIEGRLE---SIIHDSPHLVTLDLS 501 (517)
Q Consensus 454 ~~n~l~~~~--~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~l~l~ 501 (517)
++|++++.. .....+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555554321 122224555555555555555444 466677777777665
No 133
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.57 E-value=2.5e-13 Score=130.59 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=68.7
Q ss_pred hhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcc
Q 042271 319 SSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCY 398 (517)
Q Consensus 319 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 398 (517)
.+|..|..|+.+.+..... .+....+.++++|+.+.+.. .+......+|.+|.+|+.+++..+ ++.+...+|.+|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 3455555555555544321 34444555566666666542 333344455666666666666543 3334456667777
Q ss_pred cCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCcc
Q 042271 399 LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSI 458 (517)
Q Consensus 399 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 458 (517)
+|+.+.+.++ ++.....+|.+|.+|+.+++.++.... .++..+.+|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 7777777543 443455667777777777777665431 3455666777777765543
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=7.8e-16 Score=158.95 Aligned_cols=181 Identities=26% Similarity=0.296 Sum_probs=104.8
Q ss_pred CCchhhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhh
Q 042271 316 SIPSSFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS 395 (517)
Q Consensus 316 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 395 (517)
..+..+..++.|+.|++++|.+. .++..++ .+++|+.|+|++|.++ .++..+..+++|++|+|++|.+. .++..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 34566777788888888888877 6766665 4778888888888877 45566778888888888888887 5577788
Q ss_pred hcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCC-CccEEEccCCccccCCCCCCCcccccEE
Q 042271 396 KCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLN-SLKILDLSNNSIFRTLPSCFSPASIEQL 474 (517)
Q Consensus 396 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L 474 (517)
.+++|+.|++++|.+. .+|..|..+++|+.|++++|.+.+..|..+.... .+..+++++|.+++..+ ..|+.|
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l 364 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFI 364 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC----
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-----ccccee
Confidence 8888888888888887 6676788888888888888888877766664432 22346778887765444 456667
Q ss_pred EccCC--------cCCccchhhhcCCCcccEEECCCCcCC
Q 042271 475 HLSKN--------KIEGRLESIIHDSPHLVTLDLSCNSLH 506 (517)
Q Consensus 475 ~l~~n--------~~~~~~~~~l~~~~~L~~l~l~~n~~~ 506 (517)
+++.| .+....+..+.++..++...+++|-+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 77666 233334444555666667777777664
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.2e-14 Score=122.84 Aligned_cols=125 Identities=20% Similarity=0.334 Sum_probs=86.9
Q ss_pred eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEcccc
Q 042271 35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN 114 (517)
Q Consensus 35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 114 (517)
++++++++.+..++.. + .++|++|++++|.+. .+|..+.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4566666666666652 2 246777777777776 45566777777777777777777555556777777777777777
Q ss_pred ccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCC
Q 042271 115 DLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNH 164 (517)
Q Consensus 115 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 164 (517)
.+++..+.+|..+++|++|++++|.+.. ++...+..+++|++|++++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCC
Confidence 7776666677777777777777777753 555456777777777777776
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.54 E-value=8.4e-13 Score=126.91 Aligned_cols=134 Identities=13% Similarity=0.199 Sum_probs=67.4
Q ss_pred cchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcC
Q 042271 341 IPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGN 420 (517)
Q Consensus 341 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 420 (517)
+....|.+|+.|+.+.+..... .....+|.+++.|+.+.+.. .+..+...+|.+|.+|+.+.+.++ ++.....+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 3344555566666666654322 23344555666666666642 233344556666666666666543 33344456666
Q ss_pred CCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccccEEEccCCc
Q 042271 421 LSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASIEQLHLSKNK 480 (517)
Q Consensus 421 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 480 (517)
|.+|+.+.+..+ +..+...+|.+|.+|+.+++.++.... ...+.+..|+.+.+..+.
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence 666666666543 333445566666666666666654321 122335566666655443
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=3.5e-15 Score=154.07 Aligned_cols=187 Identities=22% Similarity=0.265 Sum_probs=80.5
Q ss_pred CCCcEEEccCCcCCCCCchhhhcCCCCcEEecccccccc--------ccchhHHhhcCCCcEEEccCCcccccccccccC
Q 042271 301 PGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTG--------EIPERMAARCFSLEILALSNNSLQGHIFSEKFN 372 (517)
Q Consensus 301 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~--------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 372 (517)
+.++.|++.++.+... +..+ ++.++++.+.+.+ .++...+..++.|+.|++++|.+.. ++..+..
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGG
T ss_pred CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcC
Confidence 4577777777776632 2222 2333333333221 1233444556666666666666653 2333445
Q ss_pred CCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEE
Q 042271 373 LTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILD 452 (517)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 452 (517)
+++|++|+|++|.+. .++..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+. .+|..|..+++|+.|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 666666666666666 45555666666666666666666 55666666666666666666665 4455566666666666
Q ss_pred ccCCccccCCCCCCCc--ccccEEEccCCcCCccchhhhcCCCcccEEECCCC
Q 042271 453 LSNNSIFRTLPSCFSP--ASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCN 503 (517)
Q Consensus 453 l~~n~l~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n 503 (517)
|++|++++..+..+.. .....+++++|.+++.+|. .|+.|+++.|
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 6666665554444331 1122345666666555443 4455555555
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.1e-13 Score=117.11 Aligned_cols=128 Identities=18% Similarity=0.159 Sum_probs=83.2
Q ss_pred ceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEccc
Q 042271 34 LKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDN 113 (517)
Q Consensus 34 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 113 (517)
.+.++++++.+..++... .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 355666666666655422 25677777777777655555666777777777777777644444566777777777777
Q ss_pred cccCCcccccccCCCCCcEEeccCCccccccCCCcccCCCCCceeecccCCC
Q 042271 114 NDLRGSLPLCLANLTSLRVLDVSDNQLTQNISSSPLMHLTSIEELILSNNHF 165 (517)
Q Consensus 114 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 165 (517)
|.+++..+..+..+++|++|++++|.+.+ ++...+..+++|++|++++|++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCe
Confidence 77775555556677777777777777753 4544456677777777777763
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4.9e-14 Score=119.01 Aligned_cols=132 Identities=18% Similarity=0.119 Sum_probs=108.9
Q ss_pred cCCCCcceEEeccccccCCcchhhhhhcc-cCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccC
Q 042271 28 GESKPSLKFLSLINSSKNTILDQGLRQLV-HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLM 106 (517)
Q Consensus 28 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 106 (517)
+..+++|++|+++++.+..++. +..+. +|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 5678899999999999888754 55555 999999999999854 678899999999999999985433445899999
Q ss_pred cEEEccccccCCcccc--cccCCCCCcEEeccCCccccccCCC---cccCCCCCceeecccCCC
Q 042271 107 RELHIDNNDLRGSLPL--CLANLTSLRVLDVSDNQLTQNISSS---PLMHLTSIEELILSNNHF 165 (517)
Q Consensus 107 ~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~ 165 (517)
++|++++|.++ .+|. .+..+++|++|++++|.+.. .+.. .+..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999997 4565 78899999999999999964 5542 377899999999998863
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.6e-14 Score=120.68 Aligned_cols=130 Identities=22% Similarity=0.182 Sum_probs=59.9
Q ss_pred CCCCCcEEEccCcccccccchhhhhcc-cCCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccE
Q 042271 372 NLTNLMTLQLDGNKFTGEILESLSKCY-LLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKI 450 (517)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 450 (517)
.+++|++|++++|.+... +. +..+. +|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344444555554444421 21 22222 455555555554422 34444555555555555554332233345555555
Q ss_pred EEccCCccccCCC--CCCCcccccEEEccCCcCCccchh---hhcCCCcccEEECCCCcC
Q 042271 451 LDLSNNSIFRTLP--SCFSPASIEQLHLSKNKIEGRLES---IIHDSPHLVTLDLSCNSL 505 (517)
Q Consensus 451 L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~---~l~~~~~L~~l~l~~n~~ 505 (517)
|++++|+++.... ....+++|+.|++++|.++..... .+..+++|+.||+++|.+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555555533222 111245555555555555433222 355556666666655543
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.3e-15 Score=131.41 Aligned_cols=148 Identities=22% Similarity=0.234 Sum_probs=114.4
Q ss_pred CCcCceeeCCCccccccccchh------hccCCCCcceEEeccccccCCcchhhhhhcccCcEEEecCCcccCCcccccc
Q 042271 4 FKNLEHLDMGEVQVDVNTSFLQ------IVGESKPSLKFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLA 77 (517)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 77 (517)
...++.++++.+ .+.+..+. . +..+++|++|++++|.+..++ .+..+++|++|++++|.+. .+|..+.
T Consensus 17 ~~~l~~l~l~~~--~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 17 RKSVVATEAEKV--ELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp TTCCCCTTCSEE--ECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred cccccCcchhee--EeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-cccchhh
Confidence 456777777777 55555443 4 788889999999988888876 6888999999999999888 5677777
Q ss_pred CCCCCcEEEccCCccCCCCCcchhccccCcEEEccccccCCccc-ccccCCCCCcEEeccCCccccccCC---------C
Q 042271 78 NMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNNDLRGSLP-LCLANLTSLRVLDVSDNQLTQNISS---------S 147 (517)
Q Consensus 78 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~---------~ 147 (517)
.+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+. .
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 78889999999998884 44 68888999999999998884332 4688889999999999988654332 1
Q ss_pred cccCCCCCceee
Q 042271 148 PLMHLTSIEELI 159 (517)
Q Consensus 148 ~l~~l~~L~~L~ 159 (517)
.+..+++|++|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 266788888887
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.8e-13 Score=113.32 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=77.9
Q ss_pred CCeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccC
Q 042271 400 LEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSK 478 (517)
Q Consensus 400 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~ 478 (517)
.+.+++++|.+. .+|..+ .++++.|++++|.+.+..+..|.++++|++|++++|++++..+..+. +++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 566777777776 344433 26777777777777766667777777777888877777766666543 67788888888
Q ss_pred CcCCccchhhhcCCCcccEEECCCCcCCCCCC
Q 042271 479 NKIEGRLESIIHDSPHLVTLDLSCNSLHGSIP 510 (517)
Q Consensus 479 n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~~ 510 (517)
|.+++..+..|..+++|++|+|++|++++.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88777777777788888888888888876664
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1.9e-14 Score=124.18 Aligned_cols=152 Identities=23% Similarity=0.283 Sum_probs=97.4
Q ss_pred cCCCcEEEccCCcCCCCCch------hhhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCC
Q 042271 300 LPGLMDLNLSRNAFNGSIPS------SFADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNL 373 (517)
Q Consensus 300 ~~~L~~L~l~~~~i~~~~~~------~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 373 (517)
.+.++.++++++.+.+..+. .+..+++|++|++++|.+. .++ .+..+++|+.|++++|.++. ++..+..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~-l~~~~~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKK-IENLDAVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECS-CSSHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCccc-ccchhhcC
Confidence 34555555555555444333 6777777777777777776 355 44557777777777777663 33344456
Q ss_pred CCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccc-hhhcCCCCCcEEECCCCcccccccc----------cc
Q 042271 374 TNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIP-RWLGNLSALEDIIMPNNNLEGPIPI----------EF 442 (517)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~ 442 (517)
++|++|++++|.+.+ .+ .+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..|. .+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 777777777777764 22 57777788888888887774222 3577777788888887777654333 26
Q ss_pred cCCCCccEEEccCCccc
Q 042271 443 CQLNSLKILDLSNNSIF 459 (517)
Q Consensus 443 ~~~~~L~~L~l~~n~l~ 459 (517)
..+++|+.|+ ++.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 6677777776 45553
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=1.3e-14 Score=137.49 Aligned_cols=161 Identities=21% Similarity=0.203 Sum_probs=81.7
Q ss_pred cCCCcEEEccCCcCCCCCchhhhcC-----CCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccc----
Q 042271 300 LPGLMDLNLSRNAFNGSIPSSFADM-----KMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEK---- 370 (517)
Q Consensus 300 ~~~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---- 370 (517)
.+.|+.|++++|.++......+... ++|++|++++|.+.+.....+...+++|+.|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3456666666666553332232222 5666666666666544333444445566666666666654332222
Q ss_pred -cCCCCCcEEEccCccccccc----chhhhhcccCCeEEecCCCCCCc----cchhhcCCCCCcEEECCCCccccc----
Q 042271 371 -FNLTNLMTLQLDGNKFTGEI----LESLSKCYLLEGLYLSDNHLTGE----IPRWLGNLSALEDIIMPNNNLEGP---- 437 (517)
Q Consensus 371 -~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~---- 437 (517)
...++|++|++++|.+++.. ...+..+++|++|++++|.+.+. ++..+...++|++|++++|.+.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 13456666666666664322 22234455666666666665432 133344445555555555555432
Q ss_pred ccccccCCCCccEEEccCCcccc
Q 042271 438 IPIEFCQLNSLKILDLSNNSIFR 460 (517)
Q Consensus 438 ~~~~~~~~~~L~~L~l~~n~l~~ 460 (517)
+...+...++|++|+|++|.+++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 12223334555555555555533
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.1e-12 Score=110.03 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=67.0
Q ss_pred CeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCC-cccccEEEccCC
Q 042271 401 EGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-PASIEQLHLSKN 479 (517)
Q Consensus 401 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n 479 (517)
+.++++++.+. .+|..+. ++|+.|++++|.+.+..+..|.++++|++|+|++|++++..+..+. +++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666655 4443332 5666666666666655566666666677777777766665555443 667777777777
Q ss_pred cCCccchhhhcCCCcccEEECCCCcCCCCC
Q 042271 480 KIEGRLESIIHDSPHLVTLDLSCNSLHGSI 509 (517)
Q Consensus 480 ~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~ 509 (517)
.+++.++..|..+++|++|+|++|++.+.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 776666666777777777777777776554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=3.4e-14 Score=134.48 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=127.9
Q ss_pred CCCCcEEeccccccccccchhHHh----hcCCCcEEEccCCccccccccccc-CCCCCcEEEccCcccccccchhhh---
Q 042271 324 MKMLERVDISYNQLTGEIPERMAA----RCFSLEILALSNNSLQGHIFSEKF-NLTNLMTLQLDGNKFTGEILESLS--- 395 (517)
Q Consensus 324 l~~L~~L~l~~~~i~~~~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~--- 395 (517)
++.|++|++++|.+.+.....+.. .+++|+.|++++|.+++.....+. .+++|++|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 567999999999987433322222 236899999999988754433332 467899999999998765444442
Q ss_pred --hcccCCeEEecCCCCCC----ccchhhcCCCCCcEEECCCCccccc----ccccccCCCCccEEEccCCccccCCCCC
Q 042271 396 --KCYLLEGLYLSDNHLTG----EIPRWLGNLSALEDIIMPNNNLEGP----IPIEFCQLNSLKILDLSNNSIFRTLPSC 465 (517)
Q Consensus 396 --~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 465 (517)
..++|++|++++|.+.. .++..+..+++|++|++++|.+.+. +...+...++|++|+|++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 35789999999998864 2445567788999999999988653 2456677789999999999886654333
Q ss_pred CC-----cccccEEEccCCcCCccchhhhcCCC--c---ccEEE--CCCCcCC
Q 042271 466 FS-----PASIEQLHLSKNKIEGRLESIIHDSP--H---LVTLD--LSCNSLH 506 (517)
Q Consensus 466 ~~-----~~~L~~L~l~~n~~~~~~~~~l~~~~--~---L~~l~--l~~n~~~ 506 (517)
+. +++|++|++++|.+++.....+.... . |+.+. +.+|.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 32 58899999999999876655555442 2 66776 6666654
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=2.5e-12 Score=107.53 Aligned_cols=103 Identities=19% Similarity=0.181 Sum_probs=46.3
Q ss_pred eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEcccc
Q 042271 35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN 114 (517)
Q Consensus 35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 114 (517)
++++++++.+..++.. + .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3444444444444431 1 144444555554444444444444444444444444444333333344444444444444
Q ss_pred ccCCcccccccCCCCCcEEeccCCcc
Q 042271 115 DLRGSLPLCLANLTSLRVLDVSDNQL 140 (517)
Q Consensus 115 ~~~~~~~~~~~~l~~L~~L~L~~~~~ 140 (517)
.+++..+..|..+++|++|++++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 44433333344444444444444443
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.35 E-value=7.2e-11 Score=112.89 Aligned_cols=146 Identities=10% Similarity=0.125 Sum_probs=85.6
Q ss_pred cccCCcccEEEccCCcccccCChhhhhccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHHhhcCC
Q 042271 272 IHSHQKLATLDVSNNFFRGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMAARCFS 351 (517)
Q Consensus 272 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~ 351 (517)
+..+..++.+.+..+ +. .+....+..+..|+.+.+..+ ++.....++..+.+|+.+.+..+ +. .++...|.+|++
T Consensus 213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence 344455555555433 11 223333333566666666554 33344456666777777766543 33 555666667777
Q ss_pred CcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCC
Q 042271 352 LEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSAL 424 (517)
Q Consensus 352 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 424 (517)
|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.++ ++.....+|.++..+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 777777766666566667777777777777543 44355667777777777777554 443445566666433
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=4e-12 Score=106.61 Aligned_cols=103 Identities=21% Similarity=0.291 Sum_probs=47.2
Q ss_pred eEEeccccccCCcchhhhhhcccCcEEEecCCcccCCccccccCCCCCcEEEccCCccCCCCCcchhccccCcEEEcccc
Q 042271 35 KFLSLINSSKNTILDQGLRQLVHLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNELTGNISPGLCELVLMRELHIDNN 114 (517)
Q Consensus 35 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~ 114 (517)
+.++++++.+..++. .+ .++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 344555444444443 11 144555555555554444444455555555555555444322223344444555555555
Q ss_pred ccCCcccccccCCCCCcEEeccCCcc
Q 042271 115 DLRGSLPLCLANLTSLRVLDVSDNQL 140 (517)
Q Consensus 115 ~~~~~~~~~~~~l~~L~~L~L~~~~~ 140 (517)
.+++..+..|..+++|++|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 44433333344444444444444444
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=6.2e-10 Score=106.39 Aligned_cols=145 Identities=19% Similarity=0.181 Sum_probs=74.8
Q ss_pred hhcCCCCcEEeccccccccccchhHHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhhhcccC
Q 042271 321 FADMKMLERVDISYNQLTGEIPERMAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLSKCYLL 400 (517)
Q Consensus 321 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 400 (517)
+..+.+|+.+.+..+ +. .+....+.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|.+|++|
T Consensus 213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 333444444444332 11 233334444555555555443 33333344555555666555433 222344556666666
Q ss_pred CeEEecCCCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccCCccccCCCCCCCcccc
Q 042271 401 EGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSNNSIFRTLPSCFSPASI 471 (517)
Q Consensus 401 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L 471 (517)
+.+.+.++.+......+|.+|.+|+.+.+.++ +..+...+|.+|.+|+.+.+..+ ++.+...+|...++
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 66666666555444556666666666666543 33344456667777777777543 44455555553333
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=1.2e-10 Score=109.98 Aligned_cols=132 Identities=19% Similarity=0.131 Sum_probs=91.8
Q ss_pred EEEccCc-ccccccchhhhhcccCCeEEecC-CCCCCccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccC
Q 042271 378 TLQLDGN-KFTGEILESLSKCYLLEGLYLSD-NHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSN 455 (517)
Q Consensus 378 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 455 (517)
.++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 676 4555 77888888888886 888866667788888888888888888877777888888888888888
Q ss_pred CccccCCCCCCCcccccEEEccCCcCCccc-hhhhcCCCcccEEECCCCcCCCCCCc
Q 042271 456 NSIFRTLPSCFSPASIEQLHLSKNKIEGRL-ESIIHDSPHLVTLDLSCNSLHGSIPN 511 (517)
Q Consensus 456 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~l~l~~n~~~~~~~~ 511 (517)
|++++..+..+....|+.|++.+|.+...- ...|..+.......+..+.+++.-|+
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 888777766666545888888888876331 12232222222223344555555554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=2.5e-10 Score=107.70 Aligned_cols=104 Identities=20% Similarity=0.130 Sum_probs=80.8
Q ss_pred EEEccCC-cccccccccccCCCCCcEEEccC-cccccccchhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCC
Q 042271 354 ILALSNN-SLQGHIFSEKFNLTNLMTLQLDG-NKFTGEILESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPN 431 (517)
Q Consensus 354 ~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 431 (517)
.++++++ .++. ++. +..+++|++|+|++ |.+....+..|.++++|+.|+|++|.+.+..+..|.++++|+.|++++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 6765 344 77788888888885 888876667788888888888888888877777888888888888888
Q ss_pred CcccccccccccCCCCccEEEccCCcccc
Q 042271 432 NNLEGPIPIEFCQLNSLKILDLSNNSIFR 460 (517)
Q Consensus 432 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 460 (517)
|++.+..+..|..++ |+.|+|.+|++..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888865555565554 8888888888754
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=6e-10 Score=104.39 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=84.3
Q ss_pred HHhhcCCCcEEEccCCcccccccccccCCCCCcEEEccCcccccccchhhh--hcccCCeEEecCC--C-CCC----ccc
Q 042271 345 MAARCFSLEILALSNNSLQGHIFSEKFNLTNLMTLQLDGNKFTGEILESLS--KCYLLEGLYLSDN--H-LTG----EIP 415 (517)
Q Consensus 345 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~-~~~----~~~ 415 (517)
+...+|+|+.|.+.+|.-.. . ..+ ..++|+.|++..|.+.......+. .+|+|+.|+|+.+ . ..+ .+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l-~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-I-GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-C-CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCce-e-ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 34456667777766652111 1 112 256777777776666543333333 4677777776421 1 110 011
Q ss_pred hhh--cCCCCCcEEECCCCccccccccccc---CCCCccEEEccCCccccCCCCCC-----CcccccEEEccCCcCCccc
Q 042271 416 RWL--GNLSALEDIIMPNNNLEGPIPIEFC---QLNSLKILDLSNNSIFRTLPSCF-----SPASIEQLHLSKNKIEGRL 485 (517)
Q Consensus 416 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~ 485 (517)
..+ ..+++|+.|.+.+|.+.+..+..+. .+++|++|+|+.|.+++.....+ .+++|+.|++++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 122 2467777777777776543222222 46778888887777755322111 1577888888888777655
Q ss_pred hhhhcC-CCcccEEECCCCc
Q 042271 486 ESIIHD-SPHLVTLDLSCNS 504 (517)
Q Consensus 486 ~~~l~~-~~~L~~l~l~~n~ 504 (517)
...+.. + ...++++++.
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 555553 2 3557777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=2.9e-09 Score=99.76 Aligned_cols=156 Identities=20% Similarity=0.111 Sum_probs=87.8
Q ss_pred hccCCCcEEEccCCcCCCCCchhhhcCCCCcEEeccccccccccchhHH-hhcCCCcEEEccCC--ccccc-----cccc
Q 042271 298 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERVDISYNQLTGEIPERMA-ARCFSLEILALSNN--SLQGH-----IFSE 369 (517)
Q Consensus 298 ~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~~~~L~~L~l~~n--~~~~~-----~~~~ 369 (517)
..+|+|+.|.++++.-. ..+. + .+++|++|++..|.+.......+. ..+|+|+.|+++.+ ...+. +...
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 33778888888777311 1222 3 367888888887776533332222 25778888887531 11110 0011
Q ss_pred c--cCCCCCcEEEccCcccccccchhhh---hcccCCeEEecCCCCCCcc----chhhcCCCCCcEEECCCCcccccccc
Q 042271 370 K--FNLTNLMTLQLDGNKFTGEILESLS---KCYLLEGLYLSDNHLTGEI----PRWLGNLSALEDIIMPNNNLEGPIPI 440 (517)
Q Consensus 370 ~--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~ 440 (517)
+ ..+|+|+.|++.+|.+.+.....+. .+++|++|+++.|.+.+.. +..+..+++|+.|++++|.+.+....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 1 2467888888887777543333332 3667888888777776432 22334467777777777766544333
Q ss_pred cccCCCCccEEEccCCc
Q 042271 441 EFCQLNSLKILDLSNNS 457 (517)
Q Consensus 441 ~~~~~~~L~~L~l~~n~ 457 (517)
.+...- ...+++++++
T Consensus 326 ~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC-CSEEECCSBC
T ss_pred HHHHHc-CCEEEecCCc
Confidence 333211 3456776665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=3.2e-09 Score=89.72 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=58.6
Q ss_pred cccCCCCCcEEEccCc-cccccc----chhhhhcccCCeEEecCCCCCCccchhhcCCCCCcEEECCCCccccccccccc
Q 042271 369 EKFNLTNLMTLQLDGN-KFTGEI----LESLSKCYLLEGLYLSDNHLTGEIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 443 (517)
Q Consensus 369 ~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 443 (517)
.+...+.|++|++++| .+.+.. ...+...++|++|++++|.+.+.... .+...+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~--------------------~l~~~L~ 90 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF--------------------ALAEMLK 90 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH--------------------HHHHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH--------------------HHHHHHH
Confidence 3445666666666666 554322 22233345566666666655432111 1122233
Q ss_pred CCCCccEEEccCCccccCCCCCC-----CcccccEEEc--cCCcCCcc----chhhhcCCCcccEEECCCCcCC
Q 042271 444 QLNSLKILDLSNNSIFRTLPSCF-----SPASIEQLHL--SKNKIEGR----LESIIHDSPHLVTLDLSCNSLH 506 (517)
Q Consensus 444 ~~~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l--~~n~~~~~----~~~~l~~~~~L~~l~l~~n~~~ 506 (517)
..++|++|+|++|.+++.....+ ..++|++|++ ++|.++.. +...+...++|++|++++|.+.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555555533221111 1345666666 55666543 3445555667777777777654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=6.9e-08 Score=81.47 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=21.4
Q ss_pred hhhhcCCCCcEEecccc-ccccccchhH---HhhcCCCcEEEccCCccc
Q 042271 319 SSFADMKMLERVDISYN-QLTGEIPERM---AARCFSLEILALSNNSLQ 363 (517)
Q Consensus 319 ~~~~~l~~L~~L~l~~~-~i~~~~~~~~---~~~~~~L~~L~l~~n~~~ 363 (517)
..+...+.|++|++++| .+.+.....+ ....++|++|++++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34455666666666666 5553322211 112334445555544443
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=9.7e-08 Score=78.21 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=34.5
Q ss_pred CCcEEeccccccccccchhHHhhcCCCcEEEccCCc-ccccccccccCC----CCCcEEEccCcc-cccccchhhhhccc
Q 042271 326 MLERVDISYNQLTGEIPERMAARCFSLEILALSNNS-LQGHIFSEKFNL----TNLMTLQLDGNK-FTGEILESLSKCYL 399 (517)
Q Consensus 326 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~ 399 (517)
.|++||+++|.+++.....+ .+|++|+.|++++|. +++.....+..+ ++|++|++++|. +++.....+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 35555555555443322222 334445555554442 333333333321 234444444442 44333333444444
Q ss_pred CCeEEecCC
Q 042271 400 LEGLYLSDN 408 (517)
Q Consensus 400 L~~L~l~~~ 408 (517)
|+.|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 444444444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=6.6e-08 Score=79.22 Aligned_cols=83 Identities=13% Similarity=0.072 Sum_probs=49.0
Q ss_pred cCcEEEecCCcccCCccccccCCCCCcEEEccCCc-cCCCCCcchhcc----ccCcEEEccccc-cCCcccccccCCCCC
Q 042271 57 HLQELYIGGYDLRGSLPWCLANMTSLQVLYASSNE-LTGNISPGLCEL----VLMRELHIDNND-LRGSLPLCLANLTSL 130 (517)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l----~~L~~L~L~~~~-~~~~~~~~~~~l~~L 130 (517)
.|+.||+++|.+++.-...+..|++|++|+|++|. +++.....++.+ ++|++|+|++|. +|+.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56666776666655444555666677777776663 554333334432 356677776663 665444555666666
Q ss_pred cEEeccCCc
Q 042271 131 RVLDVSDNQ 139 (517)
Q Consensus 131 ~~L~L~~~~ 139 (517)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=1.3e-07 Score=83.81 Aligned_cols=106 Identities=20% Similarity=0.238 Sum_probs=73.7
Q ss_pred cCCCCcceE--EeccccccCCcc---hhhhhhcccCcEEEecCCcccC--CccccccCCCCCcEEEccCCccCCCCCcch
Q 042271 28 GESKPSLKF--LSLINSSKNTIL---DQGLRQLVHLQELYIGGYDLRG--SLPWCLANMTSLQVLYASSNELTGNISPGL 100 (517)
Q Consensus 28 ~~~~~~L~~--L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 100 (517)
+...+.|+. ++++.|....+. .....++++|++|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444555665 555555333222 1123568899999999999886 3346677899999999999988853 345
Q ss_pred hccc--cCcEEEccccccCCccc-------ccccCCCCCcEEec
Q 042271 101 CELV--LMRELHIDNNDLRGSLP-------LCLANLTSLRVLDV 135 (517)
Q Consensus 101 ~~l~--~L~~L~L~~~~~~~~~~-------~~~~~l~~L~~L~L 135 (517)
..+. +|++|+|++|.+.+..| ..+..+++|+.||-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 5555 89999999999876444 24678899999863
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=1.2e-07 Score=84.04 Aligned_cols=109 Identities=19% Similarity=0.165 Sum_probs=79.1
Q ss_pred hhhhcccCcE--EEecCCccc---CCccccccCCCCCcEEEccCCccCC--CCCcchhccccCcEEEccccccCCccccc
Q 042271 51 GLRQLVHLQE--LYIGGYDLR---GSLPWCLANMTSLQVLYASSNELTG--NISPGLCELVLMRELHIDNNDLRGSLPLC 123 (517)
Q Consensus 51 ~l~~l~~L~~--L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 123 (517)
.|...+.|+. ++++.|... ..+.....++++|+.|+|++|.+++ .++..+..+++|++|+|++|.+++. ..
T Consensus 136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 3555666666 677777443 1222233678999999999999986 4456677999999999999999854 33
Q ss_pred ccCCC--CCcEEeccCCccccccCC------CcccCCCCCceeecc
Q 042271 124 LANLT--SLRVLDVSDNQLTQNISS------SPLMHLTSIEELILS 161 (517)
Q Consensus 124 ~~~l~--~L~~L~L~~~~~~~~~~~------~~l~~l~~L~~L~l~ 161 (517)
+..++ +|++|++++|.+.+.++. ..+..+|+|+.|+-.
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 44444 999999999999764442 136678999999843
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.79 E-value=8e-06 Score=68.22 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=43.2
Q ss_pred hcCCCCCcEEECCCCccccc----ccccccCCCCccEEEccCCccccCCCCCCC-----cccccEEEccCC---cCCc--
Q 042271 418 LGNLSALEDIIMPNNNLEGP----IPIEFCQLNSLKILDLSNNSIFRTLPSCFS-----PASIEQLHLSKN---KIEG-- 483 (517)
Q Consensus 418 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~L~~L~l~~n---~~~~-- 483 (517)
+..-..|+.|++++|.+.+. +...+..-..|++|+|+.|.+++....++. ..+|++|++++| .+..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 33334444444444444321 122333445566666666665443322221 455666666543 3332
Q ss_pred --cchhhhcCCCcccEEECCCCc
Q 042271 484 --RLESIIHDSPHLVTLDLSCNS 504 (517)
Q Consensus 484 --~~~~~l~~~~~L~~l~l~~n~ 504 (517)
.+.+++..-+.|+.|+++.|.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCCC
Confidence 244566666777777776654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.42 E-value=0.00025 Score=55.25 Aligned_cols=59 Identities=22% Similarity=0.400 Sum_probs=39.9
Q ss_pred EEEccCCccc-cCCCCCCCcccccEEEccCCcCCccchhhhcCCCcccEEECCCCcCCCCC
Q 042271 450 ILDLSNNSIF-RTLPSCFSPASIEQLHLSKNKIEGRLESIIHDSPHLVTLDLSCNSLHGSI 509 (517)
Q Consensus 450 ~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~l~l~~n~~~~~~ 509 (517)
.++.+++.++ ...|..+ +.+|++|+|++|.++.+.+..|..+++|++|+|++|++.+.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 5666666664 1233222 466777888888877777777777788888888888776543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=0.00015 Score=60.62 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=64.8
Q ss_pred hcCCCCCcEEECCCC-cccc----cccccccCCCCccEEEccCCccccCCCCCCC-----cccccEEEccCCcCCcc---
Q 042271 418 LGNLSALEDIIMPNN-NLEG----PIPIEFCQLNSLKILDLSNNSIFRTLPSCFS-----PASIEQLHLSKNKIEGR--- 484 (517)
Q Consensus 418 ~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~L~~L~l~~n~~~~~--- 484 (517)
+..-+.|++|+++++ .+.+ .+..++..-..|++|+|++|++.+....+++ ..+|++|+|++|.|+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344455666666553 4432 2445677778999999999999877666655 68999999999999864
Q ss_pred -chhhhcCCCcccEEECCCC
Q 042271 485 -LESIIHDSPHLVTLDLSCN 503 (517)
Q Consensus 485 -~~~~l~~~~~L~~l~l~~n 503 (517)
+.+++..-+.|++|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 5567888889999999875
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.22 E-value=0.0084 Score=46.53 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=17.8
Q ss_pred cCcEEEccccccCCcccccccCCCCCcEEeccCCcc
Q 042271 105 LMRELHIDNNDLRGSLPLCLANLTSLRVLDVSDNQL 140 (517)
Q Consensus 105 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 140 (517)
+|++|+|++|.++...+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555543334444555555555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.06 E-value=1.5 Score=31.70 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=20.7
Q ss_pred ccchhhcCCCCCcEEECCCCcccccccccccCCCCccEEEccC
Q 042271 413 EIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLNSLKILDLSN 455 (517)
Q Consensus 413 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 455 (517)
....+|.+|.+|+.+.+..+-.. +...+|.+|.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence 33344555555555555443222 3344555555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.72 E-value=1.7 Score=31.42 Aligned_cols=39 Identities=23% Similarity=0.051 Sum_probs=16.7
Q ss_pred ccccCCCCCcEEEccCcccccccchhhhhcccCCeEEecC
Q 042271 368 SEKFNLTNLMTLQLDGNKFTGEILESLSKCYLLEGLYLSD 407 (517)
Q Consensus 368 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 407 (517)
.+|.+|.+|+++.|..+-. .+...+|.+|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTSS-CCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCchh-eEcHHHHhccCCccEEEEcC
Confidence 3444444444444443321 13334444444444444443
Done!