Query 042273
Match_columns 100
No_of_seqs 109 out of 135
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13801 Metal_resist: Heavy-m 76.7 17 0.00036 23.2 8.7 44 15-58 41-84 (125)
2 PRK12750 cpxP periplasmic repr 75.9 9.9 0.00022 28.4 5.7 50 9-59 47-104 (170)
3 PF13986 DUF4224: Domain of un 45.1 19 0.00042 21.7 1.9 22 16-37 3-24 (47)
4 PF14829 GPAT_N: Glycerol-3-ph 39.5 65 0.0014 21.9 4.0 62 13-77 6-68 (77)
5 COG3165 Uncharacterized protei 36.4 1.5E+02 0.0033 23.4 6.2 52 30-96 138-189 (204)
6 PLN02281 chlorophyllide a oxyg 34.8 1.3E+02 0.0027 26.9 6.0 17 70-86 150-166 (536)
7 PF08824 Serine_rich: Serine r 33.6 2.1E+02 0.0045 21.5 6.4 57 40-96 8-71 (159)
8 PF10925 DUF2680: Protein of u 32.8 1.2E+02 0.0026 19.1 4.2 34 16-59 1-34 (59)
9 TIGR01062 parC_Gneg DNA topois 31.7 1E+02 0.0022 28.2 5.1 38 15-52 404-443 (735)
10 PF13217 DUF4025: Protein of u 28.4 43 0.00094 21.3 1.6 26 33-58 21-46 (55)
11 PF08822 DUF1804: Protein of u 23.4 1.8E+02 0.004 22.1 4.5 41 42-88 101-142 (165)
12 PF01022 HTH_5: Bacterial regu 23.3 1.6E+02 0.0034 16.8 3.8 36 4-47 6-41 (47)
13 smart00256 FBOX A Receptor for 22.5 99 0.0021 16.0 2.2 32 1-38 1-32 (41)
14 COG3678 CpxP P pilus assembly/ 21.5 3.5E+02 0.0076 20.1 8.3 46 10-59 53-98 (160)
15 TIGR03001 Sig-70_gmx1 RNA poly 21.4 2.5E+02 0.0054 21.5 5.0 44 10-55 172-215 (244)
16 KOG1525 Sister chromatid cohes 20.6 67 0.0015 31.3 2.0 26 3-29 75-100 (1266)
No 1
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=76.69 E-value=17 Score=23.19 Aligned_cols=44 Identities=25% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042273 15 PLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIASDSL 58 (100)
Q Consensus 15 PLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt~aa~~~ 58 (100)
.||++|...|-.+.......-+.+-+.+.+.+..|.+.+.++++
T Consensus 41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~ 84 (125)
T PF13801_consen 41 NLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPP 84 (125)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 59999999999999999999999999999999999999877654
No 2
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=75.88 E-value=9.9 Score=28.38 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=38.4
Q ss_pred hhcccCCCcHHHHHhhhhhhhcHHHHHHH--------HHHHHHHHHHHHHHHhhcCCCC
Q 042273 9 ILSQIEPLTEQQILGICGLQQSTQEAEDA--------LSQGLEALNQSILDTIASDSLS 59 (100)
Q Consensus 9 L~~qlePLTEqQl~~I~~LqqssqqaEdA--------Lsqgme~LqQsLadt~aa~~~~ 59 (100)
+...|+ ||++|...|-.++...+..-.+ .-..|..++..+.+.+.++++-
T Consensus 47 m~~~L~-LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FD 104 (170)
T PRK12750 47 IMRQLD-LTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFD 104 (170)
T ss_pred hHhhCC-CCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Confidence 456677 9999999999999887775444 4556777888888888887753
No 3
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=45.06 E-value=19 Score=21.67 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=19.5
Q ss_pred CcHHHHHhhhhhhhcHHHHHHH
Q 042273 16 LTEQQILGICGLQQSTQEAEDA 37 (100)
Q Consensus 16 LTEqQl~~I~~LqqssqqaEdA 37 (100)
||++.+..+.+.++.+.|.+--
T Consensus 3 LT~~El~elTG~k~~~~Q~~~L 24 (47)
T PF13986_consen 3 LTDEELQELTGYKRPSKQIRWL 24 (47)
T ss_pred CCHHHHHHHHCCCCHHHHHHHH
Confidence 8999999999999999887643
No 4
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=39.51 E-value=65 Score=21.91 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=36.1
Q ss_pred cCCCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCccchHHHHHHHHHh
Q 042273 13 IEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIA-SDSLSCPPNMANYMGQMAVAMNK 77 (100)
Q Consensus 13 lePLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt~a-a~~~~~~~~~~~ym~qMa~Am~k 77 (100)
+.-=|||++..+..=...+-.-=.-+..|||.|.+.-=++|. +|..+. --....+|+.++++
T Consensus 6 l~~~~Eqells~IkkeveaGkLP~~va~gmeelY~NYk~AVl~Sg~p~A---~eivlsnm~~~~Dr 68 (77)
T PF14829_consen 6 LDARSEQELLSGIKKEVEAGKLPANVAAGMEELYQNYKNAVLQSGDPNA---DEIVLSNMAVALDR 68 (77)
T ss_dssp GG--SHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHTT-TTH---HHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHH
Confidence 344578887765433322222233478999999999999984 454331 12345678777654
No 5
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.40 E-value=1.5e+02 Score=23.37 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHhHHHHHHHHHhhhhhhhhhC
Q 042273 30 STQEAEDALSQGLEALNQSILDTIASDSLSCPPNMANYMGQMAVAMNKLSTLEGFVRQSYNHVVAAG 96 (100)
Q Consensus 30 ssqqaEdALsqgme~LqQsLadt~aa~~~~~~~~~~~ym~qMa~Am~kL~~Le~Fv~QAD~LR~~~~ 96 (100)
..+-.-..+.++..++|+.+||.+.--.-. .++ + ..++.|..+-|+||...-
T Consensus 138 ~l~~~~~~l~~~~~~~q~~~Ae~iTEE~r~---~v~----~--------~ela~f~~evd~lr~~~~ 189 (204)
T COG3165 138 ALRSGSRFLKHGLKQLQRNLAEAITEEWRM---AVG----P--------LELADFAEEVDALRDAVE 189 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhc---cCC----h--------HHHHHHHHHHHHHHHHHH
Confidence 344445567999999999999998532211 111 1 126677777777776543
No 6
>PLN02281 chlorophyllide a oxygenase
Probab=34.77 E-value=1.3e+02 Score=26.88 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=15.3
Q ss_pred HHHHHHHhHHHHHHHHH
Q 042273 70 QMAVAMNKLSTLEGFVR 86 (100)
Q Consensus 70 qMa~Am~kL~~Le~Fv~ 86 (100)
.+..|++||+.+|..|+
T Consensus 150 ~~~~~~~~~~~~~~~~~ 166 (536)
T PLN02281 150 RVSTALDKLAHMEELVN 166 (536)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 57889999999999997
No 7
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=33.57 E-value=2.1e+02 Score=21.51 Aligned_cols=57 Identities=14% Similarity=0.360 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhc------CCCCCCCCccchHHHHHHHHHhH-HHHHHHHHhhhhhhhhhC
Q 042273 40 QGLEALNQSILDTIAS------DSLSCPPNMANYMGQMAVAMNKL-STLEGFVRQSYNHVVAAG 96 (100)
Q Consensus 40 qgme~LqQsLadt~aa------~~~~~~~~~~~ym~qMa~Am~kL-~~Le~Fv~QAD~LR~~~~ 96 (100)
.-+.+|||.+..+|+. +....+..+-......-.|+.++ .+|..|+.=|....-+|.
T Consensus 8 e~L~~LQ~~v~~sVs~L~~fvs~~WR~~~~le~~i~~Ir~a~~~v~~sl~~fl~FArga~~NA~ 71 (159)
T PF08824_consen 8 ETLSRLQQEVESSVSNLMSFVSSNWRSPESLERHINEIRAAVDRVRASLREFLDFARGALANAS 71 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSTT-CCCHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHc
Confidence 3467899999999843 33333333333444577888887 889999988876555543
No 8
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=32.76 E-value=1.2e+02 Score=19.10 Aligned_cols=34 Identities=29% Similarity=0.250 Sum_probs=23.6
Q ss_pred CcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042273 16 LTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIASDSLS 59 (100)
Q Consensus 16 LTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt~aa~~~~ 59 (100)
||++|...|-.|.+ |=++.-.+.+...|.+|.+.
T Consensus 1 lT~~Qk~el~~l~~----------qm~e~kK~~idk~Ve~G~iT 34 (59)
T PF10925_consen 1 LTDQQKKELKALYK----------QMLELKKQIIDKYVEAGVIT 34 (59)
T ss_pred CCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHcCCCC
Confidence 79999888877653 33555566666677777764
No 9
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=31.67 E-value=1e+02 Score=28.20 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=29.6
Q ss_pred CCcHHHHHhhhh--hhhcHHHHHHHHHHHHHHHHHHHHHH
Q 042273 15 PLTEQQILGICG--LQQSTQEAEDALSQGLEALNQSILDT 52 (100)
Q Consensus 15 PLTEqQl~~I~~--LqqssqqaEdALsqgme~LqQsLadt 52 (100)
.|||.|...|.+ |++=++-.++.+.++.+.|+...++-
T Consensus 404 ~ls~~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l 443 (735)
T TIGR01062 404 KLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAIL 443 (735)
T ss_pred CCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 499999999966 55666778888888888887776653
No 10
>PF13217 DUF4025: Protein of unknown function (DUF4025)
Probab=28.38 E-value=43 Score=21.32 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042273 33 EAEDALSQGLEALNQSILDTIASDSL 58 (100)
Q Consensus 33 qaEdALsqgme~LqQsLadt~aa~~~ 58 (100)
+..|.|++||...|.-++|+.+.|.+
T Consensus 21 ~~~d~~~~gLA~ThEQVSD~Y~EGTi 46 (55)
T PF13217_consen 21 ESSDELSQGLAVTHEQVSDTYAEGTI 46 (55)
T ss_pred ccchhhhhhhHHHHHHHHHHHhhhhH
Confidence 45688999999999999999877753
No 11
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.40 E-value=1.8e+02 Score=22.07 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhcC-CCCCCCCccchHHHHHHHHHhHHHHHHHHHhh
Q 042273 42 LEALNQSILDTIASD-SLSCPPNMANYMGQMAVAMNKLSTLEGFVRQS 88 (100)
Q Consensus 42 me~LqQsLadt~aa~-~~~~~~~~~~ym~qMa~Am~kL~~Le~Fv~QA 88 (100)
+..|-.|.+.++++. ++-+ -...+++||..+..|..||++=
T Consensus 101 LasLaDsf~K~vaaskr~lP------ets~LavA~~vl~~l~~fv~e~ 142 (165)
T PF08822_consen 101 LASLADSFSKMVAASKRVLP------ETSELAVAMEVLELLAAFVQER 142 (165)
T ss_pred HHHHHHHHHHHHHHHhhcCc------hHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555443 3221 1236999999999999999863
No 12
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=23.27 E-value=1.6e+02 Score=16.77 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=26.8
Q ss_pred hhHHHhhcccCCCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHH
Q 042273 4 TPIFVILSQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQ 47 (100)
Q Consensus 4 ellkvL~~qlePLTEqQl~~I~~LqqssqqaEdALsqgme~LqQ 47 (100)
++++.|.. .|+|-.++....++-+++ +|+-+.+|..
T Consensus 6 ~Il~~L~~--~~~~~~el~~~l~~s~~~------vs~hL~~L~~ 41 (47)
T PF01022_consen 6 RILKLLSE--GPLTVSELAEELGLSQST------VSHHLKKLRE 41 (47)
T ss_dssp HHHHHHTT--SSEEHHHHHHHHTS-HHH------HHHHHHHHHH
T ss_pred HHHHHHHh--CCCchhhHHHhccccchH------HHHHHHHHHH
Confidence 46777776 899999999999988775 5776666653
No 13
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=22.50 E-value=99 Score=16.04 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=21.8
Q ss_pred CCchhHHHhhcccCCCcHHHHHhhhhhhhcHHHHHHHH
Q 042273 1 MSVTPIFVILSQIEPLTEQQILGICGLQQSTQEAEDAL 38 (100)
Q Consensus 1 ~~SellkvL~~qlePLTEqQl~~I~~LqqssqqaEdAL 38 (100)
+|.|++-.+..++.| .++.+++..|++=..+.
T Consensus 1 lP~~ll~~I~~~l~~------~d~~~~~~vc~~~~~~~ 32 (41)
T smart00256 1 LPDEILEEILSKLPP------KDLLRLRKVSRRWRSLI 32 (41)
T ss_pred CCHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHh
Confidence 578888888888874 45667776666544433
No 14
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=21.45 E-value=3.5e+02 Score=20.13 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=32.9
Q ss_pred hcccCCCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042273 10 LSQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIASDSLS 59 (100)
Q Consensus 10 ~~qlePLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt~aa~~~~ 59 (100)
.++++ ||+.|...|..+.+..+ .++.+-+..-..++-+-++++.+.
T Consensus 53 ~~~l~-lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D 98 (160)
T COG3678 53 FKGLD-LTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFD 98 (160)
T ss_pred ccccc-ccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcC
Confidence 45566 99999999988877665 566666666666777777776653
No 15
>TIGR03001 Sig-70_gmx1 RNA polymerase sigma-70 factor, Myxococcales family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in multiple copies in the order Myxococcales. This model supercedes TIGR02233, which has now been retired.
Probab=21.45 E-value=2.5e+02 Score=21.50 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=35.2
Q ss_pred hcccCCCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042273 10 LSQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIAS 55 (100)
Q Consensus 10 ~~qlePLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt~aa 55 (100)
...++-+|-+++..+.|.-.++ .+--|++++.+|...+...++.
T Consensus 172 L~~~eg~S~~EIA~~Lgis~~T--Vk~rl~RAr~~Lr~~l~~~~~~ 215 (244)
T TIGR03001 172 LHFVDGLSMDRIGAMYQVHRST--VSRWVAQARERLLERTRRRLAE 215 (244)
T ss_pred HHHHcCCCHHHHHHHHCcCHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888887775555 6778999999999999888754
No 16
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.57 E-value=67 Score=31.33 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=21.9
Q ss_pred chhHHHhhcccCCCcHHHHHhhhhhhh
Q 042273 3 VTPIFVILSQIEPLTEQQILGICGLQQ 29 (100)
Q Consensus 3 SellkvL~~qlePLTEqQl~~I~~Lqq 29 (100)
||+|+|..|.. |-|++|+.+|+.+=-
T Consensus 75 seilRi~aPea-Py~~~~lkdIf~~~~ 100 (1266)
T KOG1525|consen 75 SEILRIYAPEA-PYTDEQLKDIFQLIL 100 (1266)
T ss_pred HHHHHHhCCCC-CCcHHHHHHHHHHHH
Confidence 68999999986 799999999987643
Done!