Query 042273
Match_columns 100
No_of_seqs 109 out of 135
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 07:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y39_A Nickel and cobalt resis 83.0 9.6 0.00033 26.5 8.6 49 8-57 14-62 (118)
2 3lay_A Zinc resistance-associa 81.8 3.1 0.00011 30.4 5.6 44 15-58 67-110 (175)
3 3itf_A Periplasmic adaptor pro 49.8 8.9 0.0003 27.0 2.2 46 9-58 40-85 (145)
4 2ke4_A CDC42-interacting prote 28.2 1.3E+02 0.0044 19.7 6.3 61 22-89 22-89 (98)
5 3ra3_A P1C; coiled coil domain 27.9 72 0.0025 16.9 3.0 18 34-51 8-25 (28)
6 2l08_A Regulator of nonsense t 26.9 12 0.00041 25.0 -0.2 21 6-26 10-31 (97)
7 1uw4_A UPF3X; nonsense mediate 24.9 12 0.00042 24.4 -0.5 22 5-26 1-23 (91)
8 2ahq_A Sigma-54, RNA polymeras 24.6 56 0.0019 20.7 2.6 13 14-26 36-48 (76)
9 2kzq_A Envelope glycoprotein E 24.3 13 0.00044 21.2 -0.4 16 37-52 5-20 (36)
10 1rbl_M Ribulose 1,5 bisphospha 23.3 57 0.0019 22.1 2.6 22 11-41 15-36 (109)
11 3ku8_A GYRA14, DNA gyrase subu 21.5 1.5E+02 0.005 21.1 4.7 39 15-53 108-148 (156)
12 1tjl_A DNAK suppressor protein 20.9 2.2E+02 0.0074 19.8 9.2 38 12-52 28-65 (151)
13 1zbd_B Rabphilin-3A; G protein 20.8 1.1E+02 0.0037 21.0 3.7 43 11-53 5-47 (134)
No 1
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=83.05 E-value=9.6 Score=26.55 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=43.0
Q ss_pred HhhcccCCCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042273 8 VILSQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIASDS 57 (100)
Q Consensus 8 vL~~qlePLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt~aa~~ 57 (100)
++-..|. ||..|-..|-.+...-..-..+|.+.|.+-..-|++++.+..
T Consensus 14 ~vh~~L~-Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~ 62 (118)
T 2y39_A 14 ILHEAVP-LDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNP 62 (118)
T ss_dssp HHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555 999999999999999999999999999999999999997654
No 2
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=81.75 E-value=3.1 Score=30.37 Aligned_cols=44 Identities=20% Similarity=0.120 Sum_probs=39.2
Q ss_pred CCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042273 15 PLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIASDSL 58 (100)
Q Consensus 15 PLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt~aa~~~ 58 (100)
.||++|...+-.+++..+..-.+|.+.|...++.|-+-+.++.+
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~ 110 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSP 110 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 49999999999999999999999999999999999888776543
No 3
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=49.79 E-value=8.9 Score=27.04 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=31.9
Q ss_pred hhcccCCCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042273 9 ILSQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIASDSL 58 (100)
Q Consensus 9 L~~qlePLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt~aa~~~ 58 (100)
+...|+ |||+|...|..|.+..+......+. ...+.|-+-+.++.+
T Consensus 40 m~~~L~-LTdeQkqqir~L~~~~r~~~~~~~~---~~r~~l~~Li~ad~f 85 (145)
T 3itf_A 40 MFDGIS-LTEHQRQQMRDLMQQARHEQPPVNV---SELETMHRLVTAENF 85 (145)
T ss_dssp TTTTCC-CCHHHHHHHHHHHHHHHHHSCCCCH---HHHHHHHHHHTCSSC
T ss_pred ccccCC-CCHHHHHHHHHHHHHHHHHhhhccH---HHHHHHHHHHccCCC
Confidence 456777 9999999999999988876655542 223445566655554
No 4
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.22 E-value=1.3e+02 Score=19.75 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=40.4
Q ss_pred HhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHhHH-------HHHHHHHhhh
Q 042273 22 LGICGLQQSTQEAEDALSQGLEALNQSILDTIASDSLSCPPNMANYMGQMAVAMNKLS-------TLEGFVRQSY 89 (100)
Q Consensus 22 ~~I~~LqqssqqaEdALsqgme~LqQsLadt~aa~~~~~~~~~~~ym~qMa~Am~kL~-------~Le~Fv~QAD 89 (100)
..|..|++..+++.++ ..|+++++....+...-| ++..+ .+++.-.-.||. -+++|+..++
T Consensus 22 ~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~G---D~~s~---~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 22 QQLEERSRELQKEVDQ-REALKKMKDVYEKTPQMG---DPASL---EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGGC---CGGGS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCccC---CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578889999888888 889999999998875433 33333 445544444444 3455666655
No 5
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.93 E-value=72 Score=16.92 Aligned_cols=18 Identities=44% Similarity=0.554 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042273 34 AEDALSQGLEALNQSILD 51 (100)
Q Consensus 34 aEdALsqgme~LqQsLad 51 (100)
..|||.|...+|.|.++.
T Consensus 8 endaleqkiaalkqkias 25 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 458999999999998775
No 6
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=26.95 E-value=12 Score=25.00 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=16.6
Q ss_pred HHHhhcccCC-CcHHHHHhhhh
Q 042273 6 IFVILSQIEP-LTEQQILGICG 26 (100)
Q Consensus 6 lkvL~~qleP-LTEqQl~~I~~ 26 (100)
+||++.+|-| |||+++....+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~ 31 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLR 31 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTS
T ss_pred eeEEEeCCCCCCCHHHHHHHhC
Confidence 6888888887 99999876543
No 7
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=24.94 E-value=12 Score=24.36 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.2
Q ss_pred hHHHhhcccCC-CcHHHHHhhhh
Q 042273 5 PIFVILSQIEP-LTEQQILGICG 26 (100)
Q Consensus 5 llkvL~~qleP-LTEqQl~~I~~ 26 (100)
|.||++.+|=| |||+++..+.+
T Consensus 1 ~~KvVIRrLPP~LteeeF~~~l~ 23 (91)
T 1uw4_A 1 LSKVVIRRLPPTLTKEQLQEHLQ 23 (91)
T ss_dssp CCEEEEEEECTTCCHHHHHHHHC
T ss_pred CcEEEEeCCCCCCCHHHHHHHhc
Confidence 35778888876 89998876643
No 8
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=24.59 E-value=56 Score=20.69 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=11.0
Q ss_pred CCCcHHHHHhhhh
Q 042273 14 EPLTEQQILGICG 26 (100)
Q Consensus 14 ePLTEqQl~~I~~ 26 (100)
.|||+++|..+..
T Consensus 36 kPlSD~~I~~~L~ 48 (76)
T 2ahq_A 36 KPYSDQEIANILK 48 (76)
T ss_dssp SCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHH
Confidence 5999999998863
No 9
>2kzq_A Envelope glycoprotein E2 peptide; membrane protein, E2 structural protein, HCV; NMR {Hepatitis c virus}
Probab=24.29 E-value=13 Score=21.20 Aligned_cols=16 Identities=56% Similarity=0.727 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 042273 37 ALSQGLEALNQSILDT 52 (100)
Q Consensus 37 ALsqgme~LqQsLadt 52 (100)
|||-|+.-|+|.+.|.
T Consensus 5 alstGliHlhqnivdv 20 (36)
T 2kzq_A 5 ALSTGLLHLHQNIVDV 20 (36)
T ss_dssp CCCCHHHHHHHHHHTT
T ss_pred hhhccceehhhhhehh
Confidence 6888999999999983
No 10
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=23.26 E-value=57 Score=22.14 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=15.5
Q ss_pred cccCCCcHHHHHhhhhhhhcHHHHHHHHHHH
Q 042273 11 SQIEPLTEQQILGICGLQQSTQEAEDALSQG 41 (100)
Q Consensus 11 ~qlePLTEqQl~~I~~LqqssqqaEdALsqg 41 (100)
+.|-|||++|+. .|-+-+|+||
T Consensus 15 SyLP~lt~eqI~---------kQI~Yll~qG 36 (109)
T 1rbl_M 15 SYLPPLSDRQIA---------AQIEYMIEQG 36 (109)
T ss_dssp TTSSCCCHHHHH---------HHHHHHHHHT
T ss_pred ccCCCCCHHHHH---------HHHHHHHHCC
Confidence 567899999874 4556666664
No 11
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=21.50 E-value=1.5e+02 Score=21.11 Aligned_cols=39 Identities=31% Similarity=0.283 Sum_probs=32.6
Q ss_pred CCcHHHHHhhhh--hhhcHHHHHHHHHHHHHHHHHHHHHHh
Q 042273 15 PLTEQQILGICG--LQQSTQEAEDALSQGLEALNQSILDTI 53 (100)
Q Consensus 15 PLTEqQl~~I~~--LqqssqqaEdALsqgme~LqQsLadt~ 53 (100)
-|||.|...|.+ |++=+.-..+.|..+.+.|....++-.
T Consensus 108 ~LSe~QA~AILdmRL~rLT~LE~~ki~~E~~eL~~~I~~l~ 148 (156)
T 3ku8_A 108 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELL 148 (156)
T ss_dssp ECCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999955 567788899999999999988887743
No 12
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=20.94 E-value=2.2e+02 Score=19.80 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=21.2
Q ss_pred ccCCCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 042273 12 QIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDT 52 (100)
Q Consensus 12 qlePLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt 52 (100)
.-+++|+.|+..+ ++...+-.+.|...++.....+.+.
T Consensus 28 ~e~~M~~~ql~~f---r~~L~~~k~eL~~~l~~~~~~~~~~ 65 (151)
T 1tjl_A 28 GEEYMNEAQLAHF---RRILEAWRNQLRDEVDRTVTHMQDE 65 (151)
T ss_dssp TCCTTCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3458899998765 3344444444444454444445443
No 13
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.83 E-value=1.1e+02 Score=21.01 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=28.2
Q ss_pred cccCCCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHh
Q 042273 11 SQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTI 53 (100)
Q Consensus 11 ~qlePLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt~ 53 (100)
|.+..|||....-|.+.=+.-++.|..-.+-+.+|++.|.+.-
T Consensus 5 ~dls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~k 47 (134)
T 1zbd_B 5 RKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMR 47 (134)
T ss_dssp ---CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566788877777766666666666666666777777777654
Done!