Query 042273
Match_columns 100
No_of_seqs 109 out of 135
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 07:34:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042273.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042273hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zbdb_ g.50.1.1 (B:) Effector 63.0 3.9 0.00028 25.9 3.7 40 14-53 1-40 (124)
2 d1ydxa2 d.287.1.2 (A:194-374) 28.9 33 0.0024 20.7 3.9 45 5-51 127-174 (181)
3 d2iaza1 a.281.1.2 (A:1-111) Hy 28.5 56 0.0041 19.4 5.3 41 14-54 59-108 (111)
4 d1ykhb1 a.252.1.1 (B:2-130) RN 23.6 75 0.0055 20.1 5.1 35 10-44 79-113 (129)
5 d1x75a1 e.11.1.1 (A:363-494) D 20.5 79 0.0058 19.9 4.7 36 16-51 88-125 (132)
6 d1hx1b_ a.7.7.1 (B:) BAG-famil 18.6 37 0.0027 21.8 2.6 21 76-96 90-110 (112)
7 d1jyoa_ d.198.1.1 (A:) Virulen 18.4 32 0.0024 20.7 2.2 16 79-94 108-123 (130)
8 d1rp3a2 a.4.13.2 (A:164-234) S 16.9 76 0.0056 16.7 4.0 40 10-51 32-71 (71)
9 d2hoea1 a.4.5.63 (A:10-71) N-a 16.7 33 0.0024 18.8 1.8 27 3-31 2-28 (62)
10 d1cnoa_ a.3.1.1 (A:) Cytochrom 16.6 25 0.0018 19.4 1.2 17 9-25 60-76 (86)
No 1
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=62.99 E-value=3.9 Score=25.87 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=32.1
Q ss_pred CCCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHh
Q 042273 14 EPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTI 53 (100)
Q Consensus 14 ePLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLadt~ 53 (100)
|+|||++...|.+.=+...+.+..-.+.+.+|.+.+.+--
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~~ 40 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMR 40 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999988767777777777788899998887754
No 2
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=28.86 E-value=33 Score=20.67 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=20.9
Q ss_pred hHHHhhcccCCCcHHHHHhhhhhhhcHHHHHHHHHH---HHHHHHHHHHH
Q 042273 5 PIFVILSQIEPLTEQQILGICGLQQSTQEAEDALSQ---GLEALNQSILD 51 (100)
Q Consensus 5 llkvL~~qlePLTEqQl~~I~~LqqssqqaEdALsq---gme~LqQsLad 51 (100)
+.++..|-+-|+.||+ .|.+.=.+....-+.+.+ .++++.++|-.
T Consensus 127 l~~~~i~~~P~l~eQ~--~I~~~l~~~d~~i~~~~~~i~~l~~lk~~Ll~ 174 (181)
T d1ydxa2 127 AGEIKVPYVKSFQLQR--KAGKIVFLLDQKLDQYKKELSSLTVIRDTLLK 174 (181)
T ss_dssp HHTCEEEECSCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455567787776 233332233333333333 34444555544
No 3
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=28.53 E-value=56 Score=19.45 Aligned_cols=41 Identities=7% Similarity=0.136 Sum_probs=31.4
Q ss_pred CCCcHHHHHhhhhhhhcH---------HHHHHHHHHHHHHHHHHHHHHhh
Q 042273 14 EPLTEQQILGICGLQQST---------QEAEDALSQGLEALNQSILDTIA 54 (100)
Q Consensus 14 ePLTEqQl~~I~~Lqqss---------qqaEdALsqgme~LqQsLadt~a 54 (100)
+|+|+.....+-++.... .+||..|++=|..+.+.++++|.
T Consensus 59 ~~~~~e~~~~l~~l~~~i~~n~~i~~~~~Ae~~l~~ll~~Vn~iI~~~i~ 108 (111)
T d2iaza1 59 QMPDASFQAKMEGFGKQIQGNSLLSEFFTKQQQLAIYLSDIEKIVFEPVS 108 (111)
T ss_dssp --CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378887777777766554 57999999999999999998874
No 4
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.60 E-value=75 Score=20.05 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=28.7
Q ss_pred hcccCCCcHHHHHhhhhhhhcHHHHHHHHHHHHHH
Q 042273 10 LSQIEPLTEQQILGICGLQQSTQEAEDALSQGLEA 44 (100)
Q Consensus 10 ~~qlePLTEqQl~~I~~LqqssqqaEdALsqgme~ 44 (100)
+|.++.=.|.|...|..|+..-+.+++-+...+.+
T Consensus 79 LP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e 113 (129)
T d1ykhb1 79 LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKK 113 (129)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778778999999999999999888777665544
No 5
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=20.46 E-value=79 Score=19.92 Aligned_cols=36 Identities=33% Similarity=0.321 Sum_probs=29.6
Q ss_pred CcHHHHHhhhh--hhhcHHHHHHHHHHHHHHHHHHHHH
Q 042273 16 LTEQQILGICG--LQQSTQEAEDALSQGLEALNQSILD 51 (100)
Q Consensus 16 LTEqQl~~I~~--LqqssqqaEdALsqgme~LqQsLad 51 (100)
|||.|...|.+ |++=+.-..+.|-.+.+.|.....+
T Consensus 88 LSe~QA~AIL~mrL~rLT~LE~~kl~~E~~eL~~~I~~ 125 (132)
T d1x75a1 88 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 125 (132)
T ss_dssp CCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 89999999965 5677888888888888888777665
No 6
>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1, BAG1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.62 E-value=37 Score=21.78 Aligned_cols=21 Identities=5% Similarity=0.058 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHhhhhhhhhhC
Q 042273 76 NKLSTLEGFVRQSYNHVVAAG 96 (100)
Q Consensus 76 ~kL~~Le~Fv~QAD~LR~~~~ 96 (100)
+-..++..|+.|+|.|+.+.+
T Consensus 90 ~lV~~iQ~~L~q~D~l~~~i~ 110 (112)
T d1hx1b_ 90 GLVKKVQAFLAECDTVEQNIC 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhHHHHHHHc
Confidence 335667899999999998754
No 7
>d1jyoa_ d.198.1.1 (A:) Virulence effector SptP secretion chaperone SicP {Salmonella typhimurium [TaxId: 90371]}
Probab=18.38 E-value=32 Score=20.75 Aligned_cols=16 Identities=38% Similarity=0.297 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhhhhh
Q 042273 79 STLEGFVRQSYNHVVA 94 (100)
Q Consensus 79 ~~Le~Fv~QAD~LR~~ 94 (100)
..|+.||+++..+|..
T Consensus 108 ~~l~~Fv~~~e~w~~~ 123 (130)
T d1jyoa_ 108 SQLESFVNQQEALKNI 123 (130)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4589999999999875
No 8
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=16.90 E-value=76 Score=16.68 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=26.4
Q ss_pred hcccCCCcHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 042273 10 LSQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILD 51 (100)
Q Consensus 10 ~~qlePLTEqQl~~I~~LqqssqqaEdALsqgme~LqQsLad 51 (100)
...++-+|-+++..+.++-.++ ..--+.+++.+|+.-|.|
T Consensus 32 l~~~~~~s~~eIA~~lgis~~t--v~~~~~ra~~~Lr~~L~~ 71 (71)
T d1rp3a2 32 LIFYEELPAKEVAKILETSVSR--VSQLKAKALERLREMLSN 71 (71)
T ss_dssp HHHTSCCCHHHHHHHTTSCHHH--HHHHHHHHHHHHHHHHHC
T ss_pred HHHhHhCCHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHccC
Confidence 3345667777777776665444 666677888888777653
No 9
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=16.67 E-value=33 Score=18.82 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=22.4
Q ss_pred chhHHHhhcccCCCcHHHHHhhhhhhhcH
Q 042273 3 VTPIFVILSQIEPLTEQQILGICGLQQST 31 (100)
Q Consensus 3 SellkvL~~qlePLTEqQl~~I~~Lqqss 31 (100)
|-+||.|.. .|+|-.++.+..+|-.++
T Consensus 2 s~Il~~i~~--~pisr~eLa~~~gls~~T 28 (62)
T d2hoea1 2 SRILKRIMK--SPVSRVELAEELGLTKTT 28 (62)
T ss_dssp CCSHHHHHH--SCBCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHH--CCcCHHHHHHHHCcCHHH
Confidence 457888864 699999999999998776
No 10
>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]}
Probab=16.56 E-value=25 Score=19.41 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=12.7
Q ss_pred hhcccCCCcHHHHHhhh
Q 042273 9 ILSQIEPLTEQQILGIC 25 (100)
Q Consensus 9 L~~qlePLTEqQl~~I~ 25 (100)
..+....|||+|+.+|-
T Consensus 60 m~~~~~~Lsd~di~~la 76 (86)
T d1cnoa_ 60 MQGQATALSDADIANLA 76 (86)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred hHHHHccCCHHHHHHHH
Confidence 34556679999998884
Done!