Query 042276
Match_columns 71
No_of_seqs 115 out of 1807
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 07:36:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 99.9 2.1E-21 7.3E-26 117.5 8.9 68 3-70 88-155 (501)
2 4g26_A Pentatricopeptide repea 99.9 3.7E-21 1.2E-25 116.5 9.1 69 2-70 122-190 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.7E-21 5.7E-26 124.9 7.7 70 1-70 143-215 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.7 3.3E-18 1.1E-22 110.0 4.5 68 1-68 181-249 (1134)
5 2xpi_A Anaphase-promoting comp 98.5 4.8E-07 1.6E-11 54.5 7.5 68 2-70 458-531 (597)
6 2xpi_A Anaphase-promoting comp 98.5 4.7E-07 1.6E-11 54.6 7.4 69 2-71 492-566 (597)
7 1w3b_A UDP-N-acetylglucosamine 97.7 0.00063 2.2E-08 39.1 8.6 67 2-70 288-354 (388)
8 3mkr_A Coatomer subunit epsilo 97.7 0.00054 1.8E-08 38.8 8.2 67 2-70 183-249 (291)
9 2gw1_A Mitochondrial precursor 97.6 0.00034 1.2E-08 41.2 7.2 66 2-70 23-88 (514)
10 2fo7_A Synthetic consensus TPR 97.6 0.00073 2.5E-08 32.5 7.3 65 3-69 53-117 (136)
11 1na0_A Designed protein CTPR3; 97.6 0.00084 2.9E-08 32.1 7.4 67 2-70 26-92 (125)
12 2fo7_A Synthetic consensus TPR 97.6 0.00098 3.4E-08 32.1 8.1 67 2-70 18-84 (136)
13 1w3b_A UDP-N-acetylglucosamine 97.5 0.001 3.5E-08 38.3 8.0 66 2-70 254-320 (388)
14 3mkr_A Coatomer subunit epsilo 97.5 0.0015 5.2E-08 36.9 8.0 63 2-70 82-145 (291)
15 2y4t_A DNAJ homolog subfamily 97.3 0.0017 5.9E-08 37.8 7.4 67 2-70 43-109 (450)
16 1b89_A Protein (clathrin heavy 97.3 0.00077 2.6E-08 41.0 5.9 55 2-71 139-193 (449)
17 2ho1_A Type 4 fimbrial biogene 97.3 0.0037 1.3E-07 33.7 8.0 29 20-48 105-133 (252)
18 4eqf_A PEX5-related protein; a 97.2 0.0032 1.1E-07 35.8 7.8 66 3-70 231-296 (365)
19 3gyz_A Chaperone protein IPGC; 97.2 0.0027 9.2E-08 32.9 6.8 66 2-70 53-119 (151)
20 2vq2_A PILW, putative fimbrial 97.2 0.0042 1.4E-07 32.6 7.6 27 21-47 114-140 (225)
21 4ga2_A E3 SUMO-protein ligase 97.2 0.0055 1.9E-07 31.2 7.7 65 2-70 48-114 (150)
22 2ho1_A Type 4 fimbrial biogene 97.2 0.0043 1.5E-07 33.4 7.6 66 3-69 123-189 (252)
23 4eqf_A PEX5-related protein; a 97.2 0.0033 1.1E-07 35.8 7.3 68 2-70 194-262 (365)
24 4gco_A Protein STI-1; structur 97.2 0.005 1.7E-07 30.6 7.3 66 2-70 30-96 (126)
25 3k9i_A BH0479 protein; putativ 97.1 0.0012 4E-08 32.2 4.6 68 2-70 7-76 (117)
26 2xcb_A PCRH, regulatory protei 97.1 0.0052 1.8E-07 30.8 7.0 66 2-70 35-101 (142)
27 3uq3_A Heat shock protein STI1 97.1 0.0016 5.6E-08 34.9 5.3 67 2-70 22-94 (258)
28 1fch_A Peroxisomal targeting s 97.1 0.0057 1.9E-07 34.6 7.7 67 2-70 81-147 (368)
29 2pl2_A Hypothetical conserved 97.1 0.0066 2.3E-07 32.6 7.5 63 3-69 136-199 (217)
30 2vq2_A PILW, putative fimbrial 97.1 0.009 3.1E-07 31.3 8.5 68 2-70 59-128 (225)
31 2pl2_A Hypothetical conserved 97.1 0.0075 2.6E-07 32.4 7.8 65 2-70 101-166 (217)
32 2y4t_A DNAJ homolog subfamily 97.1 0.0047 1.6E-07 36.0 7.3 66 2-70 274-344 (450)
33 2kat_A Uncharacterized protein 97.0 0.0066 2.3E-07 29.2 7.4 66 2-70 2-68 (115)
34 1fch_A Peroxisomal targeting s 97.0 0.0098 3.4E-07 33.6 8.1 67 3-70 199-266 (368)
35 3as5_A MAMA; tetratricopeptide 97.0 0.0092 3.2E-07 30.2 8.0 65 3-69 94-158 (186)
36 1xnf_A Lipoprotein NLPI; TPR, 97.0 0.0059 2E-07 33.1 7.0 49 20-69 43-91 (275)
37 2vgx_A Chaperone SYCD; alterna 97.0 0.0071 2.4E-07 30.8 6.9 66 2-70 38-104 (148)
38 3sz7_A HSC70 cochaperone (SGT) 96.9 0.0099 3.4E-07 30.3 7.3 66 2-70 28-94 (164)
39 3cv0_A Peroxisome targeting si 96.9 0.0061 2.1E-07 33.7 6.9 45 3-48 224-268 (327)
40 2lni_A Stress-induced-phosphop 96.9 0.0088 3E-07 28.8 8.0 66 2-70 33-99 (133)
41 1xnf_A Lipoprotein NLPI; TPR, 96.9 0.009 3.1E-07 32.4 7.3 67 2-70 60-126 (275)
42 2kck_A TPR repeat; tetratricop 96.9 0.0085 2.9E-07 27.9 8.2 69 2-71 23-93 (112)
43 3upv_A Heat shock protein STI1 96.9 0.01 3.6E-07 28.8 7.3 66 2-70 21-87 (126)
44 3as5_A MAMA; tetratricopeptide 96.9 0.013 4.4E-07 29.6 7.8 67 2-70 59-125 (186)
45 1elr_A TPR2A-domain of HOP; HO 96.8 0.0074 2.5E-07 28.9 5.9 68 2-70 21-94 (131)
46 1b89_A Protein (clathrin heavy 96.8 9.8E-05 3.4E-09 44.9 -1.2 44 20-70 94-137 (449)
47 2xev_A YBGF; tetratricopeptide 96.8 0.0099 3.4E-07 28.7 6.4 65 2-70 19-91 (129)
48 1elw_A TPR1-domain of HOP; HOP 96.7 0.011 3.9E-07 27.7 7.1 67 2-70 21-87 (118)
49 3cv0_A Peroxisome targeting si 96.7 0.021 7.2E-07 31.6 8.0 29 19-47 171-199 (327)
50 3uq3_A Heat shock protein STI1 96.7 0.021 7.2E-07 30.5 7.9 67 2-70 156-222 (258)
51 3q49_B STIP1 homology and U bo 96.7 0.014 4.8E-07 28.5 7.3 67 2-70 26-92 (137)
52 2q7f_A YRRB protein; TPR, prot 96.7 0.021 7.1E-07 30.3 7.8 65 3-69 109-173 (243)
53 1hxi_A PEX5, peroxisome target 96.7 0.014 4.7E-07 28.7 6.5 65 2-70 34-100 (121)
54 4i17_A Hypothetical protein; T 96.7 0.021 7.1E-07 30.5 7.7 67 2-70 24-91 (228)
55 2dba_A Smooth muscle cell asso 96.7 0.015 5.2E-07 28.5 7.3 66 2-70 45-114 (148)
56 1hh8_A P67PHOX, NCF-2, neutrop 96.7 0.0098 3.3E-07 31.3 6.2 64 2-70 23-86 (213)
57 2q7f_A YRRB protein; TPR, prot 96.7 0.022 7.5E-07 30.2 8.5 30 19-48 90-119 (243)
58 3fp2_A TPR repeat-containing p 96.7 0.0092 3.2E-07 35.4 6.5 68 1-70 41-108 (537)
59 2vyi_A SGTA protein; chaperone 96.6 0.015 5.3E-07 27.7 7.3 29 20-48 80-108 (131)
60 2ond_A Cleavage stimulation fa 96.6 0.031 1.1E-06 31.4 8.1 66 2-70 81-149 (308)
61 3edt_B KLC 2, kinesin light ch 96.6 0.0088 3E-07 32.3 5.6 68 3-70 26-100 (283)
62 2ond_A Cleavage stimulation fa 96.5 0.039 1.3E-06 31.0 8.2 67 2-70 186-256 (308)
63 3ieg_A DNAJ homolog subfamily 96.5 0.042 1.4E-06 30.6 8.1 67 2-70 137-203 (359)
64 3hym_B Cell division cycle pro 96.5 0.023 7.9E-07 31.4 6.9 68 2-70 176-251 (330)
65 3nf1_A KLC 1, kinesin light ch 96.4 0.0087 3E-07 32.9 5.1 47 2-48 170-223 (311)
66 3u4t_A TPR repeat-containing p 96.4 0.018 6E-07 31.3 6.2 66 2-69 20-88 (272)
67 3ieg_A DNAJ homolog subfamily 96.3 0.028 9.5E-07 31.4 6.9 67 2-70 20-86 (359)
68 4abn_A Tetratricopeptide repea 96.3 0.035 1.2E-06 33.4 7.4 63 2-68 120-183 (474)
69 1na0_A Designed protein CTPR3; 96.3 0.028 9.5E-07 26.5 8.3 63 2-66 60-122 (125)
70 2l6j_A TPR repeat-containing p 96.3 0.027 9.4E-07 26.3 7.9 46 2-49 21-67 (111)
71 3k9i_A BH0479 protein; putativ 96.2 0.032 1.1E-06 26.9 6.2 64 2-67 44-109 (117)
72 2vyi_A SGTA protein; chaperone 96.2 0.031 1.1E-06 26.5 8.4 67 2-70 29-95 (131)
73 3vtx_A MAMA; tetratricopeptide 96.2 0.044 1.5E-06 28.1 7.9 65 3-70 91-156 (184)
74 3ma5_A Tetratricopeptide repea 96.2 0.027 9.4E-07 26.6 5.6 64 2-67 24-89 (100)
75 3hym_B Cell division cycle pro 96.2 0.064 2.2E-06 29.6 7.8 48 21-69 160-207 (330)
76 3urz_A Uncharacterized protein 96.1 0.033 1.1E-06 29.7 6.2 44 3-48 72-116 (208)
77 1a17_A Serine/threonine protei 96.1 0.044 1.5E-06 27.3 7.3 30 19-48 46-75 (166)
78 3edt_B KLC 2, kinesin light ch 96.1 0.016 5.6E-07 31.2 5.0 69 2-70 60-142 (283)
79 2c2l_A CHIP, carboxy terminus 96.1 0.077 2.6E-06 29.7 7.8 66 2-70 21-87 (281)
80 2r5s_A Uncharacterized protein 96.0 0.055 1.9E-06 27.9 8.5 65 4-70 93-159 (176)
81 2gw1_A Mitochondrial precursor 96.0 0.03 1E-06 33.0 6.1 67 2-70 206-285 (514)
82 3nf1_A KLC 1, kinesin light ch 96.0 0.027 9.3E-07 30.9 5.5 69 2-70 44-126 (311)
83 1na3_A Designed protein CTPR2; 96.0 0.035 1.2E-06 25.0 7.5 64 2-67 26-89 (91)
84 4gcn_A Protein STI-1; structur 95.9 0.022 7.4E-07 28.2 4.7 46 2-49 25-71 (127)
85 3fp2_A TPR repeat-containing p 95.9 0.072 2.5E-06 31.6 7.5 28 20-47 310-337 (537)
86 4gyw_A UDP-N-acetylglucosamine 95.9 0.079 2.7E-06 34.0 7.9 65 2-70 94-160 (723)
87 2lni_A Stress-induced-phosphop 95.9 0.051 1.7E-06 26.0 7.7 65 2-69 67-132 (133)
88 3urz_A Uncharacterized protein 95.8 0.078 2.7E-06 28.2 6.8 47 22-70 56-103 (208)
89 3ma5_A Tetratricopeptide repea 95.7 0.055 1.9E-06 25.5 5.7 51 19-70 6-56 (100)
90 3u4t_A TPR repeat-containing p 95.7 0.1 3.4E-06 28.2 7.4 68 2-70 54-123 (272)
91 2ooe_A Cleavage stimulation fa 95.7 0.11 3.8E-06 31.4 7.7 58 2-63 29-87 (530)
92 3qww_A SET and MYND domain-con 95.7 0.091 3.1E-06 31.8 7.2 70 2-71 315-398 (433)
93 3vtx_A MAMA; tetratricopeptide 95.6 0.086 2.9E-06 27.0 7.3 46 2-49 22-68 (184)
94 2e2e_A Formate-dependent nitri 95.6 0.059 2E-06 27.6 5.7 30 19-48 43-72 (177)
95 1v54_E Cytochrome C oxidase po 95.5 0.084 2.9E-06 26.2 7.2 60 5-65 30-89 (109)
96 1p5q_A FKBP52, FK506-binding p 95.5 0.15 5E-06 29.3 7.5 50 20-70 196-245 (336)
97 4ga2_A E3 SUMO-protein ligase 95.5 0.045 1.5E-06 27.8 4.9 65 2-70 14-80 (150)
98 1wao_1 Serine/threonine protei 95.4 0.14 4.7E-06 31.0 7.5 66 2-70 23-89 (477)
99 3u3w_A Transcriptional activat 95.4 0.1 3.4E-06 29.1 6.5 69 2-70 132-211 (293)
100 4gyw_A UDP-N-acetylglucosamine 95.3 0.13 4.3E-06 33.1 7.3 64 2-69 26-91 (723)
101 2vsy_A XCC0866; transferase, g 95.2 0.18 6E-06 30.8 7.5 28 20-47 57-84 (568)
102 3gyz_A Chaperone protein IPGC; 95.2 0.11 3.7E-06 26.7 5.7 53 16-70 31-85 (151)
103 2ooe_A Cleavage stimulation fa 95.1 0.25 8.7E-06 29.8 8.0 64 3-69 304-370 (530)
104 2l6j_A TPR repeat-containing p 95.1 0.095 3.2E-06 24.3 5.7 51 19-70 3-53 (111)
105 1elr_A TPR2A-domain of HOP; HO 95.1 0.1 3.5E-06 24.7 6.2 62 2-65 55-122 (131)
106 2h6f_A Protein farnesyltransfe 95.0 0.12 4.1E-06 30.6 6.2 45 2-48 114-160 (382)
107 4abn_A Tetratricopeptide repea 95.0 0.077 2.6E-06 31.9 5.5 29 19-47 257-285 (474)
108 2kat_A Uncharacterized protein 95.0 0.11 3.6E-06 24.7 5.2 62 2-65 36-99 (115)
109 2e2e_A Formate-dependent nitri 95.0 0.15 5.3E-06 25.9 7.0 46 2-49 98-144 (177)
110 2ff4_A Probable regulatory pro 95.0 0.18 6E-06 30.0 6.8 45 17-61 201-251 (388)
111 2h6f_A Protein farnesyltransfe 94.9 0.31 1E-05 28.8 8.5 67 2-71 149-216 (382)
112 3qou_A Protein YBBN; thioredox 94.9 0.24 8.3E-06 27.7 7.9 65 4-70 204-270 (287)
113 3n71_A Histone lysine methyltr 94.8 0.23 7.8E-06 30.5 7.2 70 2-71 326-409 (490)
114 2kc7_A BFR218_protein; tetratr 94.8 0.12 4E-06 23.8 5.4 46 2-49 17-64 (99)
115 1a17_A Serine/threonine protei 94.8 0.16 5.4E-06 25.2 5.9 47 2-49 64-110 (166)
116 2fbn_A 70 kDa peptidylprolyl i 94.7 0.21 7.1E-06 26.1 7.7 49 21-70 89-137 (198)
117 1p5q_A FKBP52, FK506-binding p 94.6 0.21 7.2E-06 28.7 6.5 64 2-69 213-278 (336)
118 2if4_A ATFKBP42; FKBP-like, al 94.6 0.3 1E-05 28.1 7.1 48 22-70 232-279 (338)
119 3mv2_B Coatomer subunit epsilo 94.5 0.37 1.3E-05 28.1 8.3 45 2-48 195-239 (310)
120 2vgx_A Chaperone SYCD; alterna 94.4 0.21 7.3E-06 25.2 5.7 54 16-70 16-70 (148)
121 2kck_A TPR repeat; tetratricop 94.4 0.16 5.4E-06 23.3 6.1 47 2-49 57-106 (112)
122 2xcb_A PCRH, regulatory protei 94.3 0.19 6.4E-06 24.9 5.3 46 2-49 69-115 (142)
123 2y69_E Cytochrome C oxidase su 94.3 0.26 9E-06 25.8 7.2 58 7-65 75-132 (152)
124 3mv2_B Coatomer subunit epsilo 94.3 0.22 7.7E-06 29.0 6.1 47 3-49 118-165 (310)
125 3qwp_A SET and MYND domain-con 94.2 0.47 1.6E-05 28.6 7.5 70 2-71 304-387 (429)
126 1ouv_A Conserved hypothetical 94.2 0.34 1.2E-05 26.4 8.4 11 34-44 92-102 (273)
127 1hh8_A P67PHOX, NCF-2, neutrop 94.1 0.29 9.8E-06 25.5 8.0 68 2-70 54-136 (213)
128 4a1g_A Mitotic checkpoint seri 94.1 0.3 1E-05 25.7 6.4 54 2-55 82-136 (152)
129 2vsy_A XCC0866; transferase, g 94.1 0.56 1.9E-05 28.6 7.8 64 2-68 74-138 (568)
130 2pzi_A Probable serine/threoni 93.9 0.3 1E-05 30.8 6.5 66 2-71 450-517 (681)
131 1qqe_A Vesicular transport pro 93.9 0.4 1.4E-05 26.8 6.5 69 2-70 135-214 (292)
132 2dba_A Smooth muscle cell asso 93.9 0.25 8.7E-06 23.9 6.6 50 19-70 27-80 (148)
133 3q49_B STIP1 homology and U bo 93.8 0.26 8.8E-06 23.8 6.3 52 18-70 7-58 (137)
134 3qou_A Protein YBBN; thioredox 93.7 0.48 1.7E-05 26.5 6.6 46 2-49 134-180 (287)
135 3qky_A Outer membrane assembly 93.5 0.45 1.6E-05 25.8 6.6 46 2-49 32-81 (261)
136 3bee_A Putative YFRE protein; 93.5 0.28 9.5E-06 23.2 6.8 46 2-49 26-72 (93)
137 3u3w_A Transcriptional activat 93.4 0.53 1.8E-05 26.1 6.6 69 2-70 92-170 (293)
138 1kt0_A FKBP51, 51 kDa FK506-bi 93.3 0.56 1.9E-05 28.2 6.8 49 20-69 317-365 (457)
139 1ouv_A Conserved hypothetical 93.3 0.51 1.8E-05 25.7 8.4 60 2-67 23-86 (273)
140 1hxi_A PEX5, peroxisome target 93.3 0.24 8E-06 24.1 4.4 46 2-49 68-114 (121)
141 4i17_A Hypothetical protein; T 93.2 0.48 1.6E-05 25.0 6.4 52 19-70 6-57 (228)
142 3esl_A Checkpoint serine/threo 93.2 0.57 1.9E-05 25.8 7.0 53 3-55 97-150 (202)
143 1na3_A Designed protein CTPR2; 93.2 0.26 8.8E-06 21.9 5.6 51 19-70 8-58 (91)
144 2wvi_A Mitotic checkpoint seri 93.2 0.5 1.7E-05 25.2 6.9 55 2-56 77-132 (164)
145 1zu2_A Mitochondrial import re 93.1 0.37 1.3E-05 25.4 5.2 61 2-66 63-135 (158)
146 1wao_1 Serine/threonine protei 93.1 0.41 1.4E-05 29.0 6.1 46 2-49 57-103 (477)
147 3ro2_A PINS homolog, G-protein 92.9 0.27 9.4E-06 26.9 4.8 67 2-70 22-98 (338)
148 4gco_A Protein STI-1; structur 92.9 0.41 1.4E-05 23.4 7.1 55 2-60 64-120 (126)
149 4a1s_A PINS, partner of inscut 92.9 0.23 7.9E-06 28.5 4.6 67 2-70 65-141 (411)
150 1ihg_A Cyclophilin 40; ppiase 92.8 0.72 2.5E-05 27.0 6.6 49 20-69 273-321 (370)
151 4aez_C MAD3, mitotic spindle c 92.8 0.71 2.4E-05 25.8 6.2 53 2-54 131-184 (223)
152 3upv_A Heat shock protein STI1 92.3 0.48 1.6E-05 22.6 7.0 46 2-49 55-101 (126)
153 2xev_A YBGF; tetratricopeptide 92.1 0.48 1.7E-05 22.5 7.5 46 2-49 56-105 (129)
154 2qfc_A PLCR protein; TPR, HTH, 92.0 0.9 3.1E-05 25.2 6.3 69 2-70 172-251 (293)
155 2fbn_A 70 kDa peptidylprolyl i 92.0 0.71 2.4E-05 24.0 6.8 62 2-67 105-168 (198)
156 3ulq_A Response regulator aspa 91.8 0.5 1.7E-05 27.1 5.1 50 21-70 225-279 (383)
157 3gw4_A Uncharacterized protein 91.6 0.52 1.8E-05 24.1 4.7 30 19-48 65-94 (203)
158 3sz7_A HSC70 cochaperone (SGT) 91.6 0.7 2.4E-05 23.2 7.2 46 2-49 62-108 (164)
159 1kt0_A FKBP51, 51 kDa FK506-bi 91.6 0.86 3E-05 27.3 6.1 63 2-68 334-398 (457)
160 4gcn_A Protein STI-1; structur 91.3 0.69 2.4E-05 22.5 6.0 49 20-70 8-57 (127)
161 1pc2_A Mitochondria fission pr 91.2 0.71 2.4E-05 24.3 4.8 49 2-54 52-103 (152)
162 3rkv_A Putative peptidylprolyl 91.1 0.8 2.7E-05 23.0 7.6 50 20-70 63-112 (162)
163 2r5s_A Uncharacterized protein 90.9 0.73 2.5E-05 23.5 4.8 46 2-47 125-171 (176)
164 3sf4_A G-protein-signaling mod 90.9 0.68 2.3E-05 26.2 5.0 67 2-70 26-102 (406)
165 2c2l_A CHIP, carboxy terminus 90.9 1.2 4.2E-05 24.7 6.2 50 19-70 3-53 (281)
166 3q15_A PSP28, response regulat 90.6 0.71 2.4E-05 26.5 4.9 28 21-48 223-250 (378)
167 2ifu_A Gamma-SNAP; membrane fu 90.4 0.83 2.9E-05 25.6 5.0 29 20-48 155-183 (307)
168 3ly7_A Transcriptional activat 90.1 2 6.8E-05 25.8 6.8 41 19-61 276-316 (372)
169 3ro3_A PINS homolog, G-protein 89.9 0.39 1.3E-05 23.3 3.1 28 21-48 50-77 (164)
170 2pzi_A Probable serine/threoni 89.9 1.9 6.4E-05 27.3 6.7 67 2-70 408-482 (681)
171 2o03_A Probable zinc uptake re 89.7 0.82 2.8E-05 23.0 4.2 46 24-69 14-59 (131)
172 1elw_A TPR1-domain of HOP; HOP 89.5 0.87 3E-05 20.8 8.6 46 2-49 55-101 (118)
173 4ets_A Ferric uptake regulatio 89.4 1.4 4.8E-05 23.1 5.7 64 5-69 17-83 (162)
174 3rkv_A Putative peptidylprolyl 89.3 1.2 4.2E-05 22.2 7.3 57 2-62 80-138 (162)
175 2yhc_A BAMD, UPF0169 lipoprote 89.1 1.6 5.3E-05 23.2 6.0 46 2-49 164-213 (225)
176 3mwm_A ZUR, putative metal upt 89.1 0.79 2.7E-05 23.4 3.9 57 12-69 6-62 (139)
177 3ro2_A PINS homolog, G-protein 89.0 0.84 2.9E-05 24.9 4.2 29 20-48 263-291 (338)
178 1ihg_A Cyclophilin 40; ppiase 88.9 2.3 7.8E-05 24.9 7.2 62 2-67 290-353 (370)
179 2b7e_A PRE-mRNA processing pro 88.8 0.26 8.7E-06 21.9 1.6 34 2-35 3-37 (59)
180 2v5f_A Prolyl 4-hydroxylase su 88.8 1.1 3.8E-05 21.2 5.5 52 2-55 22-79 (104)
181 3rjv_A Putative SEL1 repeat pr 88.2 1.8 6.3E-05 22.9 6.6 44 4-50 5-48 (212)
182 3sf4_A G-protein-signaling mod 88.0 1.1 3.6E-05 25.4 4.3 28 20-47 267-294 (406)
183 3ly7_A Transcriptional activat 87.8 2.7 9.2E-05 25.2 6.0 56 2-61 294-349 (372)
184 2if4_A ATFKBP42; FKBP-like, al 87.8 2.6 8.9E-05 24.2 5.9 47 1-49 246-293 (338)
185 1mzb_A Ferric uptake regulatio 87.7 1.2 4.1E-05 22.5 4.0 59 10-69 8-67 (136)
186 3eyy_A Putative iron uptake re 87.7 1.8 6.1E-05 22.2 5.8 59 9-69 8-66 (145)
187 4g1t_A Interferon-induced prot 87.3 3 0.0001 24.4 6.2 52 19-70 50-109 (472)
188 1xi4_A Clathrin heavy chain; a 86.9 2.6 8.8E-05 30.0 6.1 49 19-69 1133-1181(1630)
189 2hr2_A Hypothetical protein; a 86.6 2.3 7.9E-05 22.4 6.3 67 2-70 28-117 (159)
190 2fu4_A Ferric uptake regulatio 86.6 1.4 4.9E-05 20.0 6.0 60 9-69 6-66 (83)
191 4a1s_A PINS, partner of inscut 86.6 1.4 4.6E-05 25.3 4.3 26 22-47 265-290 (411)
192 4g1t_A Interferon-induced prot 86.2 2.6 8.9E-05 24.6 5.4 30 19-48 93-122 (472)
193 3gw4_A Uncharacterized protein 86.0 2.2 7.7E-05 21.7 6.0 68 2-70 9-81 (203)
194 2qfc_A PLCR protein; TPR, HTH, 85.8 3 0.0001 23.0 8.3 69 2-70 132-211 (293)
195 2yru_A Steroid receptor RNA ac 85.8 2.2 7.6E-05 21.4 5.0 44 6-49 47-90 (118)
196 1xi4_A Clathrin heavy chain; a 85.7 2.9 9.9E-05 29.8 5.9 47 19-71 1104-1150(1630)
197 1qqe_A Vesicular transport pro 85.5 2.7 9.1E-05 23.4 5.0 48 2-49 175-228 (292)
198 2fe3_A Peroxide operon regulat 84.9 2.6 9E-05 21.5 7.0 60 9-69 11-70 (145)
199 2w57_A Ferric uptake regulatio 84.6 2.8 9.6E-05 21.6 5.6 60 9-69 6-66 (150)
200 4f3v_A ESX-1 secretion system 84.4 4.2 0.00014 23.4 6.5 21 29-49 217-237 (282)
201 2yhc_A BAMD, UPF0169 lipoprote 84.2 3.2 0.00011 22.0 7.7 48 2-49 21-70 (225)
202 2xig_A Ferric uptake regulatio 84.1 3 0.0001 21.5 6.9 60 9-69 16-75 (150)
203 3ulq_A Response regulator aspa 83.6 4.5 0.00015 23.1 6.0 47 2-48 241-292 (383)
204 3q15_A PSP28, response regulat 83.4 4.6 0.00016 23.1 6.5 48 2-49 239-290 (378)
205 2uwj_G Type III export protein 83.1 3 0.0001 20.7 4.8 33 28-64 47-79 (115)
206 3u64_A Protein TP_0956; tetrat 83.0 5.2 0.00018 23.4 6.6 63 3-67 181-251 (301)
207 2p58_C Putative type III secre 82.9 3.1 0.00011 20.7 6.1 54 3-64 25-80 (116)
208 3qky_A Outer membrane assembly 81.6 4.5 0.00015 21.7 6.7 50 19-70 14-67 (261)
209 3qww_A SET and MYND domain-con 80.7 3.8 0.00013 24.8 4.6 47 2-48 357-410 (433)
210 1uzc_A Hypothetical protein FL 79.1 3.2 0.00011 18.9 3.1 32 35-67 13-45 (71)
211 3mkq_B Coatomer subunit alpha; 79.0 5.7 0.00019 21.4 4.6 41 2-48 22-62 (177)
212 3vu7_H DNA repair protein REV1 78.9 4.8 0.00016 20.4 4.6 46 2-47 39-87 (124)
213 3n71_A Histone lysine methyltr 78.5 4.8 0.00016 24.8 4.6 47 2-48 368-421 (490)
214 3ygs_P Procaspase 9; apoptosis 78.4 4.2 0.00014 19.4 4.5 56 7-70 26-83 (97)
215 3mkq_A Coatomer beta'-subunit; 78.2 2.1 7.3E-05 26.9 3.1 31 18-48 679-709 (814)
216 1hz4_A MALT regulatory protein 77.9 7.3 0.00025 22.0 5.7 51 20-70 135-189 (373)
217 3qwp_A SET and MYND domain-con 77.8 5.3 0.00018 24.1 4.6 47 2-48 346-399 (429)
218 4e6h_A MRNA 3'-END-processing 77.6 12 0.0004 24.2 7.9 47 2-49 487-533 (679)
219 2ko4_A Mediator of RNA polymer 77.5 2.8 9.6E-05 19.7 2.6 33 14-46 30-62 (81)
220 1v3f_A Pleckstrin 2; three-hel 76.5 5.6 0.00019 19.9 4.4 48 4-51 8-71 (120)
221 1nzn_A CGI-135 protein, fissio 76.4 5.9 0.0002 20.1 4.2 46 3-49 56-103 (126)
222 2dod_A Transcription elongatio 76.0 3.7 0.00013 19.3 2.9 29 36-65 16-45 (82)
223 2hr2_A Hypothetical protein; a 75.7 6.9 0.00024 20.5 5.5 62 2-63 74-150 (159)
224 1zu2_A Mitochondrial import re 74.8 7.3 0.00025 20.4 5.2 64 2-69 19-94 (158)
225 4fjo_A DNA repair protein REV1 74.3 5.8 0.0002 19.1 5.4 45 2-46 12-59 (97)
226 4b4t_Q 26S proteasome regulato 73.2 11 0.00037 21.7 5.3 47 2-48 21-83 (434)
227 2qfz_A TBC1 domain family memb 73.0 11 0.00039 21.8 5.5 48 6-53 230-277 (345)
228 2ff4_A Probable regulatory pro 72.8 12 0.00042 22.1 6.5 46 24-70 175-220 (388)
229 1y8m_A FIS1; mitochondria, unk 72.8 8.2 0.00028 20.1 5.9 51 3-55 60-110 (144)
230 2ifu_A Gamma-SNAP; membrane fu 72.8 6.9 0.00024 21.8 4.0 50 20-70 116-170 (307)
231 3o48_A Mitochondria fission 1 72.7 8 0.00027 19.9 5.7 50 3-54 61-110 (134)
232 1pc2_A Mitochondria fission pr 72.1 8.7 0.0003 20.1 6.3 66 3-70 16-86 (152)
233 1wgl_A TOLL-interacting protei 71.8 5.3 0.00018 17.5 4.7 24 31-54 34-57 (59)
234 1oai_A Nuclear RNA export fact 71.5 5.3 0.00018 17.5 2.7 23 33-55 33-56 (59)
235 3hzj_A Rabgap1L, RAB GTPase-ac 70.5 12 0.0004 21.4 4.7 46 6-51 175-220 (310)
236 3qye_A TBC1 domain family memb 69.9 10 0.00034 21.9 4.3 46 6-51 209-254 (331)
237 1fsh_A Dishevelled-1; three-he 68.8 8.6 0.00029 18.7 5.4 48 4-51 21-85 (105)
238 3u64_A Protein TP_0956; tetrat 68.7 15 0.00052 21.5 6.6 59 2-62 221-284 (301)
239 4h7y_A Dual specificity protei 68.2 12 0.0004 20.0 6.7 61 2-64 77-137 (161)
240 2qq8_A TBC1 domain family memb 68.1 8.9 0.0003 22.3 3.9 45 6-50 214-258 (334)
241 1xqo_A 8-oxoguanine DNA glycos 67.6 7.6 0.00026 22.2 3.3 41 2-44 197-246 (256)
242 4e6h_A MRNA 3'-END-processing 67.2 21 0.00073 23.0 5.7 62 2-65 521-584 (679)
243 2nsz_A Programmed cell death p 67.2 10 0.00035 19.0 3.7 22 25-46 12-33 (129)
244 1klx_A Cysteine rich protein B 66.6 10 0.00034 18.6 6.7 45 3-50 43-91 (138)
245 1zbp_A Hypothetical protein VP 66.4 16 0.00056 21.1 6.0 61 3-64 15-77 (273)
246 1nnv_A Hypothetical protein HI 66.0 2.8 9.7E-05 20.8 1.3 24 2-25 18-42 (110)
247 4b4t_Q 26S proteasome regulato 66.0 16 0.00056 20.9 5.2 51 20-70 135-190 (434)
248 3f3f_C Nucleoporin NUP85; stru 65.5 6.2 0.00021 25.2 3.0 51 19-71 515-565 (570)
249 2i2x_B MTAC, methyltransferase 64.2 15 0.00052 20.6 4.2 60 9-69 17-85 (258)
250 3cqc_A Nuclear pore complex pr 64.0 8.4 0.00029 22.0 3.2 28 21-48 35-62 (270)
251 2ion_A PDCD4, programmed cell 63.6 13 0.00046 19.2 3.7 23 24-46 13-35 (152)
252 2v5f_A Prolyl 4-hydroxylase su 61.8 11 0.00038 17.5 6.1 52 19-70 4-61 (104)
253 1wxp_A THO complex subunit 1; 61.8 9.1 0.00031 18.6 2.7 23 21-43 75-97 (110)
254 1uhw_A Pleckstrin; three-helix 60.4 7.1 0.00024 19.3 2.1 47 5-51 9-71 (109)
255 1fad_A Protein (FADD protein); 60.3 12 0.00043 17.6 4.2 21 22-42 73-93 (99)
256 2p1h_A APAF-1, apoptotic prote 60.2 12 0.00041 17.4 5.1 57 5-69 25-81 (94)
257 1wy6_A Hypothetical protein ST 60.1 18 0.0006 19.3 6.3 36 16-51 121-156 (172)
258 2es9_A Putative cytoplasmic pr 58.2 9.9 0.00034 18.5 2.4 52 2-53 14-68 (115)
259 3ezq_B Protein FADD; apoptosis 58.1 16 0.00056 18.3 4.0 43 3-48 48-91 (122)
260 1zl8_A LIN-7; heterodimer, alp 57.9 8.5 0.00029 16.5 1.9 22 34-55 7-28 (53)
261 2ijq_A Hypothetical protein; s 57.7 19 0.00066 19.0 5.7 46 3-48 50-103 (161)
262 4gns_B Protein CSD3, chitin bi 56.8 31 0.0011 22.8 5.1 31 17-47 367-398 (754)
263 3bge_A Predicted ATPase; struc 56.5 23 0.0008 19.5 5.2 39 26-64 10-51 (201)
264 2r9g_A AAA ATPase, central reg 56.2 24 0.00081 19.5 4.6 38 26-64 17-57 (204)
265 1ixm_A SPO0B, protein (sporula 55.9 17 0.00057 19.6 3.3 25 24-48 36-60 (192)
266 4gns_B Protein CSD3, chitin bi 55.8 38 0.0013 22.4 5.3 40 30-71 347-387 (754)
267 2xm6_A Protein corresponding t 55.3 31 0.001 20.5 8.6 30 20-49 183-216 (490)
268 2xm6_A Protein corresponding t 55.2 31 0.001 20.5 9.0 57 3-65 349-409 (490)
269 3rjv_A Putative SEL1 repeat pr 55.1 21 0.00073 18.7 7.7 15 35-49 68-82 (212)
270 4f3v_A ESX-1 secretion system 53.3 30 0.001 19.9 6.4 33 22-54 173-205 (282)
271 1q2z_A ATP-dependent DNA helic 53.3 3.1 0.00011 20.8 0.2 14 35-48 42-55 (120)
272 3ctd_A Putative ATPase, AAA fa 53.1 28 0.00095 19.4 5.2 46 19-64 31-79 (213)
273 3qil_A Clathrin heavy chain 1; 51.3 19 0.00065 18.4 2.8 42 22-66 34-75 (125)
274 1hz4_A MALT regulatory protein 51.0 31 0.0011 19.4 6.1 47 2-48 31-81 (373)
275 1dvk_A PRP18; PRE-mRNA splicin 50.9 28 0.00095 18.8 4.9 43 5-47 66-109 (173)
276 2yqf_A Ankyrin-1; death domain 50.5 20 0.0007 17.4 2.9 18 22-39 77-94 (111)
277 2rg8_A Programmed cell death p 49.7 27 0.00093 18.3 4.5 25 23-47 13-37 (165)
278 2zk9_X Protein-glutaminase; de 49.4 24 0.00083 19.1 3.2 24 31-54 38-61 (185)
279 2jp7_A MRNA export factor MEX6 48.6 9.1 0.00031 16.6 1.3 23 33-56 32-54 (57)
280 4b4t_R RPN7, 26S proteasome re 48.4 19 0.00064 21.7 3.0 26 23-48 134-159 (429)
281 3mkq_A Coatomer beta'-subunit; 47.2 21 0.00071 22.5 3.2 26 23-48 739-764 (814)
282 3bqo_A Telomeric repeat-bindin 46.2 29 0.00098 19.3 3.2 21 27-47 124-144 (211)
283 1fkm_A Protein (GYP1P), ORF YO 44.8 28 0.00096 20.8 3.4 45 6-50 217-261 (396)
284 1dp3_A TRAM protein; helix-loo 43.9 15 0.00052 15.9 1.6 34 36-69 12-45 (55)
285 1rw2_A ATP-dependent DNA helic 43.8 3.9 0.00013 21.5 -0.4 13 35-47 73-85 (152)
286 2p22_A Suppressor protein STP2 42.8 39 0.0013 18.2 4.0 50 17-67 108-157 (174)
287 3l6a_A Eukaryotic translation 42.6 52 0.0018 19.6 4.5 25 23-47 15-39 (364)
288 3lvg_A Clathrin heavy chain 1; 42.4 7 0.00024 25.1 0.5 50 19-70 82-131 (624)
289 2crb_A Nuclear receptor bindin 42.0 31 0.0011 16.7 2.7 24 23-46 18-41 (97)
290 2e2a_A Protein (enzyme IIA); h 41.8 29 0.001 17.0 2.6 19 30-48 30-48 (105)
291 1wcr_A PTS system, N, N'-diace 41.4 30 0.001 16.9 2.6 19 30-48 28-46 (103)
292 1wty_A Hypothetical protein TT 40.0 34 0.0012 16.7 3.4 27 36-62 53-79 (119)
293 2of5_H Leucine-rich repeat and 39.7 35 0.0012 16.8 5.2 43 3-46 55-97 (118)
294 1otr_A Protein CUE2; protein-p 39.2 24 0.00084 14.8 4.7 39 4-47 7-45 (49)
295 3ezx_A MMCP 1, monomethylamine 38.6 43 0.0015 18.3 3.3 33 33-65 15-47 (215)
296 4hl4_A TBC1 domain family memb 37.9 56 0.0019 18.5 5.0 45 6-51 189-234 (292)
297 3eiq_C Programmed cell death p 37.7 65 0.0022 19.2 4.2 28 21-48 218-245 (358)
298 3bu8_A Telomeric repeat-bindin 37.2 57 0.002 18.4 7.4 48 2-49 89-143 (235)
299 3k1s_A PTS system, cellobiose- 36.9 39 0.0013 16.7 2.6 19 30-48 32-50 (109)
300 2keb_A DNA polymerase subunit 36.6 40 0.0014 16.5 7.6 59 3-62 27-89 (101)
301 2zu6_B Programmed cell death p 36.4 54 0.0018 19.1 3.6 26 22-47 168-193 (307)
302 2f6m_A Suppressor protein STP2 35.6 34 0.0012 15.3 4.3 45 22-67 4-48 (65)
303 2cso_A Pleckstrin; DEP domain, 35.0 32 0.0011 17.5 2.2 47 5-51 19-81 (127)
304 3rjo_A Endoplasmic reticulum a 34.7 74 0.0025 19.0 8.0 60 2-64 217-292 (419)
305 3l8r_A PTCA, putative PTS syst 34.6 43 0.0015 16.9 2.6 19 30-48 47-65 (120)
306 2whn_A PILC, pilus assembly pr 34.5 40 0.0014 15.9 2.8 25 22-46 78-102 (116)
307 4g8k_A 2-5A-dependent ribonucl 34.5 62 0.0021 18.1 4.4 7 30-36 280-286 (337)
308 3a54_A Protein-glutaminase; mu 34.2 71 0.0024 18.6 4.2 38 17-54 119-175 (305)
309 3mab_A Uncharacterized protein 34.2 42 0.0014 16.0 3.5 27 39-65 36-62 (93)
310 1ug3_A EIF4GI, eukaryotic prot 33.9 38 0.0013 19.7 2.7 23 24-46 15-37 (339)
311 3c1d_A Protein ORAA, regulator 33.6 52 0.0018 16.9 5.0 12 41-52 84-95 (159)
312 3lpz_A GET4 (YOR164C homolog); 33.4 77 0.0026 18.8 6.3 46 21-66 36-105 (336)
313 2hm2_Q ASC2, pyrin-only protei 33.3 25 0.00086 16.4 1.6 29 20-48 50-78 (89)
314 1dce_A Protein (RAB geranylger 33.2 90 0.0031 19.5 7.4 61 2-65 126-188 (567)
315 3ajv_A Putative uncharacterize 32.6 64 0.0022 17.6 3.4 36 19-54 85-120 (190)
316 2ysr_A DEP domain-containing p 32.5 47 0.0016 16.1 3.2 35 18-52 38-82 (105)
317 3tjy_A Effector protein hopab3 32.3 46 0.0016 15.8 5.7 42 24-65 8-51 (94)
318 2ilr_A Protein FACE, fanconi a 31.7 77 0.0026 18.3 7.1 61 7-69 147-208 (264)
319 4b8b_A General negative regula 31.2 95 0.0032 20.2 4.2 39 29-67 458-496 (603)
320 1x87_A Urocanase protein; stru 31.1 20 0.00068 22.8 1.2 40 3-42 238-282 (551)
321 2pk8_A Uncharacterized protein 30.8 52 0.0018 16.0 2.6 18 39-56 22-39 (103)
322 1v54_I STA, cytochrome C oxida 30.6 24 0.00083 16.2 1.2 15 39-53 56-70 (73)
323 2rfa_A Transient receptor pote 30.3 62 0.0021 16.8 3.4 48 6-53 135-184 (232)
324 3pvs_A Replication-associated 30.3 95 0.0033 18.9 4.5 40 26-65 258-300 (447)
325 2lp4_A Chemotaxis protein CHEA 30.2 71 0.0024 17.4 4.2 64 2-65 14-95 (225)
326 3kyj_A CHEA3, putative histidi 30.0 60 0.0021 16.5 4.3 28 38-65 72-99 (144)
327 2cp9_A EF-TS, EF-TSMT, elongat 30.0 42 0.0014 14.9 1.9 15 33-47 35-49 (64)
328 3hgl_A Effector protein hopab2 29.7 50 0.0017 15.5 5.7 41 24-64 10-52 (85)
329 2fkn_A Urocanate hydratase; ro 29.5 20 0.00069 22.8 1.1 40 3-42 239-283 (552)
330 3bqs_A Uncharacterized protein 28.9 54 0.0018 15.6 4.1 28 38-65 35-62 (93)
331 3t5v_B Nuclear mRNA export pro 28.8 36 0.0012 21.0 2.1 33 21-53 177-209 (455)
332 2rpa_A Katanin P60 ATPase-cont 28.7 43 0.0015 15.5 1.9 23 26-48 18-40 (78)
333 1ich_A TNF-1, tumor necrosis f 28.5 61 0.0021 16.1 5.1 45 4-49 57-101 (112)
334 2bn5_A PSI; nuclear protein, s 28.3 34 0.0012 13.1 2.9 22 27-48 9-30 (33)
335 1uwk_A Urocanate hydratase; hy 28.2 19 0.00067 22.8 0.8 39 4-42 244-287 (557)
336 3qf2_A Nacht, LRR and PYD doma 28.1 26 0.0009 17.2 1.2 22 25-46 55-76 (110)
337 2cos_A Serine/threonine protei 27.9 45 0.0015 14.4 3.2 36 7-47 12-49 (54)
338 3oq9_A Tumor necrosis factor r 27.7 55 0.0019 15.3 4.2 28 37-67 42-70 (86)
339 3q7a_A Farnesyltransferase alp 27.6 1E+02 0.0034 18.3 7.7 65 3-69 185-256 (349)
340 2gf5_A FADD protein; death dom 27.6 76 0.0026 16.9 4.8 43 3-47 140-182 (191)
341 2km6_A Nacht, LRR and PYD doma 27.6 21 0.00073 17.4 0.8 29 21-49 55-83 (106)
342 3ezq_A Tumor necrosis factor r 27.2 66 0.0022 16.0 4.4 28 19-46 65-92 (115)
343 2qx5_A Nucleoporin NIC96; mRNA 26.9 1.2E+02 0.004 19.9 4.2 41 22-66 155-197 (661)
344 1wwp_A Hypothetical protein TT 26.8 63 0.0022 15.7 3.5 18 20-37 53-70 (119)
345 2ve8_A FTSK, DNA translocase F 26.5 56 0.0019 15.0 2.4 28 24-52 27-54 (73)
346 2lch_A Protein OR38; structura 26.4 61 0.0021 15.4 4.1 29 38-66 67-95 (113)
347 1vcz_A RNAse NGR3; hydrolase, 26.3 32 0.0011 18.7 1.5 29 38-66 121-152 (217)
348 3dra_A Protein farnesyltransfe 26.1 99 0.0034 17.7 8.1 63 3-67 164-232 (306)
349 2jtt_C Calcyclin-binding prote 26.1 39 0.0013 13.1 3.1 26 40-68 9-34 (35)
350 4hkm_A Anthranilate phosphorib 26.0 1.1E+02 0.0037 18.1 6.5 48 2-50 22-69 (346)
351 3eu9_A Huntingtin-interacting 25.6 56 0.0019 16.9 2.3 38 6-43 23-62 (240)
352 2eab_A Alpha-fucosidase; glyco 25.5 1.6E+02 0.0056 20.0 5.8 31 25-55 727-757 (899)
353 1vcs_A Vesicle transport throu 25.3 66 0.0022 15.4 3.8 31 2-32 48-81 (102)
354 3fdq_A Motility gene repressor 24.6 84 0.0029 16.4 3.7 44 4-47 6-50 (170)
355 1k1a_A B-cell lymphoma 3-encod 24.5 83 0.0028 16.3 3.4 28 26-53 12-39 (241)
356 2y7e_A 3-keto-5-aminohexanoate 23.9 18 0.00063 20.9 0.2 26 34-59 127-152 (282)
357 2gno_A DNA polymerase III, gam 23.8 1.1E+02 0.0038 17.5 3.7 29 24-53 211-241 (305)
358 2k6x_A Sigma-A, RNA polymerase 23.8 59 0.002 14.4 2.3 33 20-52 23-58 (72)
359 2qyw_A Vesicle transport throu 23.7 72 0.0025 15.3 2.6 10 2-11 59-68 (102)
360 2nz7_A NOD1, caspase recruitme 23.4 73 0.0025 15.2 3.2 56 6-69 31-86 (98)
361 2ftc_L MRPL20 protein; mitocho 23.1 83 0.0028 15.8 3.4 42 18-64 71-112 (118)
362 2br9_A 14-3-3E, 14-3-3 protein 23.0 1.1E+02 0.0038 17.2 5.6 38 28-65 13-50 (234)
363 3no5_A Uncharacterized protein 22.6 19 0.00065 20.7 0.1 26 35-60 123-148 (275)
364 2etb_A Transient receptor pote 22.5 42 0.0015 17.9 1.5 30 25-54 4-33 (256)
365 1bh9_B TAFII28; histone fold, 22.4 75 0.0025 15.0 3.8 48 4-54 22-73 (89)
366 2q7x_A UPF0052 protein SP_1565 22.4 1.2E+02 0.004 17.9 3.4 44 6-49 71-121 (326)
367 3m6y_A 4-hydroxy-2-oxoglutarat 22.1 18 0.00061 20.9 -0.1 44 5-48 225-269 (275)
368 3t8k_A Uncharacterized protein 22.1 93 0.0032 16.0 4.5 31 25-55 40-70 (186)
369 3m0z_A Putative aldolase; MCSG 22.0 16 0.00053 20.8 -0.3 44 5-48 202-246 (249)
370 1xg7_A Hypothetical protein; s 21.7 42 0.0014 19.2 1.3 25 2-26 197-225 (250)
371 3e02_A Uncharacterized protein 21.3 22 0.00075 20.8 0.2 27 34-60 150-176 (311)
372 1iqq_A S3-RNAse; japanese PEAR 21.2 71 0.0024 17.0 2.2 24 44-67 119-144 (200)
373 4fhn_B Nucleoporin NUP120; pro 21.1 2.1E+02 0.0072 19.7 4.7 46 22-69 940-985 (1139)
374 1dvo_A FINO, fertility inhibit 21.0 1E+02 0.0035 16.1 3.0 23 48-70 78-100 (152)
375 3e49_A Uncharacterized protein 20.6 23 0.00079 20.8 0.2 27 34-60 150-176 (311)
376 2cwy_A Hypothetical protein TT 20.4 83 0.0029 14.8 3.1 44 3-48 19-67 (94)
377 1gh9_A 8.3 kDa protein (gene M 20.3 48 0.0016 15.0 1.2 20 30-49 38-57 (71)
378 2btv_A T2A, T2B, protein (VP3 20.1 86 0.0029 21.3 2.6 34 14-48 488-521 (901)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.86 E-value=2.1e-21 Score=117.47 Aligned_cols=68 Identities=16% Similarity=0.044 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+|.++|++|.+.|+.||..|||++|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.|+
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC
Confidence 45555555555555555555555555555555555555555555555555555555555555555543
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.85 E-value=3.7e-21 Score=116.46 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|+
T Consensus 122 ~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 122 EMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999986
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=124.89 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHH---hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 1 MDEANGLAELMI---QRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 1 ~~~a~~~~~~m~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+++|.++|++|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+||+++|+.|+
T Consensus 143 leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~ 215 (1134)
T 3spa_A 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215 (1134)
T ss_dssp HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Confidence 368999998886 4689999999999999999999999999999999999999999999999999999875
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=3.3e-18 Score=109.95 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 042276 1 MDEANGLAELMIQRGVNPDTSTCNALMDGFCLADRF-DRARELLVSMGSKGCKQDAFSHSILINGGSAR 68 (71)
Q Consensus 1 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 68 (71)
+++|.++|++|.+.|+.||++|||++|+++|+.|+. ++|.++|++|..+|+.||..+|++++++..+.
T Consensus 181 ~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 368999999999999999999999999999999984 78999999999999999999999888776553
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.54 E-value=4.8e-07 Score=54.52 Aligned_cols=68 Identities=12% Similarity=-0.184 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCcc--HHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSK----GCKQD--AFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~~~ 70 (71)
++|.++|+++.+.. +.+..+|+.+...+.+.|++++|+++|+++.+. +..|+ ..+|..+..+|.+.|+
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 46777777776542 226777788888888888888888888777654 66676 6677777777777665
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.54 E-value=4.7e-07 Score=54.56 Aligned_cols=69 Identities=14% Similarity=-0.018 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhc----CCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcccC
Q 042276 2 DEANGLAELMIQR----GVNPD--TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIRK 71 (71)
Q Consensus 2 ~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 71 (71)
++|.++|+++.+. +..|+ ..+|+.+..+|.+.|++++|+++|+++.+.+ ..+..+|..+..+|.+.|++
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCH
Confidence 6789999999765 77887 7899999999999999999999999998764 34789999999999998874
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.68 E-value=0.00063 Score=39.13 Aligned_cols=67 Identities=15% Similarity=-0.029 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|+++.+.. +.+..+|+.+...+.+.|++++|.+.++++.+.. ..+..++..+...+.+.|+
T Consensus 288 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 288 AEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 34555555554431 2355566666666666666666666666665431 2234556666666665554
No 8
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.68 E-value=0.00054 Score=38.78 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|..+|+++.+. .+.+...|+.+-.++.+.|++++|+..|++..... .-+..++..+...+...|+
T Consensus 183 ~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 183 QDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 4677777777665 23467777878778888888888888888876542 1255667777666666554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00034 Score=41.19 Aligned_cols=66 Identities=8% Similarity=-0.039 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|.++.+.. |+..+|..+..++.+.|++++|+..|+++.+.. ..+..+|..+..++.+.|+
T Consensus 23 ~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 23 DDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhh
Confidence 57888999998764 789999999999999999999999999998763 2356788888888887775
No 10
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.62 E-value=0.00073 Score=32.54 Aligned_cols=65 Identities=14% Similarity=0.001 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+|...++++.... +.+...+..+...+.+.|++++|.+.++++.+.. ..+..++..+...+.+.|
T Consensus 53 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 117 (136)
T 2fo7_A 53 EAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 117 (136)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHc
Confidence 3444444443321 1134444444455555555555555555554331 113344444444444443
No 11
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.62 E-value=0.00084 Score=32.05 Aligned_cols=67 Identities=15% Similarity=0.036 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...+.+..... +.+..++..+...+.+.|++++|..+|+++.... ..+..++..+...+.+.|+
T Consensus 26 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 26 DEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC
Confidence 46777777776542 2356777788888888888888888888887642 2355667777766666554
No 12
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.62 E-value=0.00098 Score=32.08 Aligned_cols=67 Identities=15% Similarity=0.023 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|..+++++.+.. +.+...+..+...+.+.|++++|..+++++.... ..+...+..+...+.+.|+
T Consensus 18 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 18 DEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 57888898887653 2367888889999999999999999999998653 2356677778777777665
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.001 Score=38.27 Aligned_cols=66 Identities=15% Similarity=-0.037 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|+.+.+. .| +..+|+.+...+.+.|++++|++.|+++.+.. ..+..+|..+...+.+.|+
T Consensus 254 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 254 DLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC
Confidence 3455566665543 23 45566666666666666666666666665542 3355666666666665554
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.46 E-value=0.0015 Score=36.92 Aligned_cols=63 Identities=13% Similarity=-0.032 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPD-TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|.+.++++...+..|+ ...+..+-..+.+.|++++|++.+++ ..+...+..+...+.+.|+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Confidence 345566666655554453 33333333555566666666666655 2345555555555555554
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.33 E-value=0.0017 Score=37.76 Aligned_cols=67 Identities=6% Similarity=-0.196 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|..+|+++.+.. +.+..+|..+...+.+.|++++|+..|+++.+.+ ..+..+|..+...|.+.|+
T Consensus 43 ~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 43 ADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 46777777776541 2367778888888888888888888888887653 2246677777777776665
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.32 E-value=0.00077 Score=41.05 Aligned_cols=55 Identities=11% Similarity=-0.033 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcccC
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIRK 71 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 71 (71)
++|...|..+ ..|.-+.+.+.+.|++++|.+.++++. ++.+|..++.+|...|+|
T Consensus 139 eeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 139 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEF 193 (449)
T ss_dssp TTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcH
Confidence 4566666654 478888888888888888888888872 678888888888887753
No 17
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.29 E-value=0.0037 Score=33.66 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
...+..+...+.+.|++++|+++|++...
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44444444444444555555555444444
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.25 E-value=0.0032 Score=35.82 Aligned_cols=66 Identities=17% Similarity=-0.113 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+|...|++..+.. +.+..+|+.+-..+.+.|++++|+..|++..+.. ..+..+|..+-..|.+.|+
T Consensus 231 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 231 RAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3444444443321 1134455555555555555555555555554431 1124444444444444443
No 19
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.23 E-value=0.0027 Score=32.91 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|+..... .| +...|..+=.++.+.|++++|+..|++..+.. .-+...|..+=.+|.+.|+
T Consensus 53 ~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 53 EEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 5788888888765 45 68888888888999999999999999987652 1245667777777777665
No 20
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.22 E-value=0.0042 Score=32.58 Aligned_cols=27 Identities=11% Similarity=-0.203 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 21 STCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
..+..+-..+.+.|++++|+..|+++.
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 21
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.20 E-value=0.0055 Score=31.24 Aligned_cols=65 Identities=14% Similarity=-0.097 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
++|.+.|++..+. .| +..+|..+=..+.+.|++++|+..|++..+. .| +..+|..+-..+.+.|+
T Consensus 48 ~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 48 DLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 5677778777654 44 6788888888888899999999988888765 34 45667777777766654
No 22
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.19 E-value=0.0043 Score=33.41 Aligned_cols=66 Identities=11% Similarity=-0.114 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 3 EANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+|...+++..+.+..| +...+..+...+.+.|++++|.+.|++..+.. ..+...+..+...+.+.|
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcC
Confidence 4455555554422233 34455555555555555555555555554432 113444444544444444
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.18 E-value=0.0033 Score=35.80 Aligned_cols=68 Identities=16% Similarity=0.022 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVN-PDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...+++..+..-. ++..+|..+-..+.+.|++++|++.|++..+.. ..+..+|..+...|.+.|+
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 5788888888765321 268899999999999999999999999998752 3367889999999888776
No 24
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.18 E-value=0.005 Score=30.61 Aligned_cols=66 Identities=11% Similarity=-0.113 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|.+..+. .| +...|..+-.++.+.|++++|+..|++..+.. ..+...|..+-.++.+.|+
T Consensus 30 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 30 PTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCC
Confidence 5677888877654 34 67888888888889999999999998887652 2245667777777766665
No 25
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.13 E-value=0.0012 Score=32.17 Aligned_cols=68 Identities=13% Similarity=-0.023 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcCC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGV-NP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+.+. .| +...|..+-..+.+.|++++|+..|++..+.. .-+...+..+-.++.+.|+
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCC
Confidence 345555555554321 12 45556666666666666666666666665542 1134444445444444443
No 26
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.10 E-value=0.0052 Score=30.80 Aligned_cols=66 Identities=8% Similarity=-0.135 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|+..... .| +...|..+-..+.+.|++++|+..|+...... .-+...|..+-.++...|+
T Consensus 35 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 35 DDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 4677777777654 34 67777777778888888888888888887652 1244556666666665554
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0016 Score=34.91 Aligned_cols=67 Identities=16% Similarity=0.011 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcc----HHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKG--CKQD----AFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+.. .+..+|..+-..+.+.|++++|++.+++..+.. ..|+ ..+|..+-..+.+.|+
T Consensus 22 ~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 22 DEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp HHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 57889999998776 788999999999999999999999999987642 1122 4777777777777665
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.08 E-value=0.0057 Score=34.61 Aligned_cols=67 Identities=12% Similarity=-0.121 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|+++.+.. +.+..+|..+-..+.+.|++++|++.|++..+.. ..+..++..+...+.+.|+
T Consensus 81 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 147 (368)
T 1fch_A 81 PNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 147 (368)
T ss_dssp HHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 57888888887652 2378889999999999999999999999998763 3367788888888877765
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.07 E-value=0.0066 Score=32.64 Aligned_cols=63 Identities=11% Similarity=-0.026 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhcc
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARI 69 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~ 69 (71)
+|...|++..+.. .+...+..+-..+.+.|++++|+..|++..+. .| +...+..+-..+.+.|
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcc
Confidence 4444444444433 34444455555555555555555555555433 12 3334444444444433
No 30
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.07 E-value=0.009 Score=31.29 Aligned_cols=68 Identities=7% Similarity=-0.119 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLA-DRFDRARELLVSMGSKGCKQD-AFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~ 70 (71)
++|...++...+.. +.+..++..+...+.+. |++++|...++++.+.+..|+ ...|..+...+.+.|+
T Consensus 59 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 59 DKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 34555555554431 12455566666666666 666666666666655322332 3445555555554443
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.07 E-value=0.0075 Score=32.42 Aligned_cols=65 Identities=15% Similarity=-0.054 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...++...+. .| +...|..+=..+.+.|++++|+..|++..+.. .+...+..+-..+...|+
T Consensus 101 ~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 101 EQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCC
Confidence 5788888888765 45 67888888889999999999999999998876 678888888888877775
No 32
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.06 E-value=0.0047 Score=35.95 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPD-----TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|+.+.+. .|+ ...|..+...+.+.|++++|+..++++.... ..+..+|..+..+|.+.|+
T Consensus 274 ~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 274 TDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcC
Confidence 4677788887653 343 4577888888888999999999998887652 2357788888888877765
No 33
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.03 E-value=0.0066 Score=29.18 Aligned_cols=66 Identities=12% Similarity=0.003 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+++...|++..+. .| +...|..+-..+.+.|++++|+..|++..... ..+...|..+-..+.+.|+
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 68 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGD 68 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCC
Confidence 4566667666543 34 57777777778888888888888888877652 1245566666666665554
No 34
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.99 E-value=0.0098 Score=33.62 Aligned_cols=67 Identities=16% Similarity=0.048 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 3 EANGLAELMIQRGVN-PDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+|...|+++.+..-. ++..++..+-..+.+.|++++|+..|++..... ..+..+|..+...+.+.|+
T Consensus 199 ~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC
Confidence 455555555443111 135555556666666666666666666655431 1234455555555554443
No 35
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.99 E-value=0.0092 Score=30.18 Aligned_cols=65 Identities=12% Similarity=-0.092 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+|...++...+.. +.+...+..+...+.+.|++++|.+.+++..+.. ..+...+..+...+.+.|
T Consensus 94 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 94 LAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 3444444443321 1244455555555555555555555555554432 123344444444444443
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.99 E-value=0.0059 Score=33.09 Aligned_cols=49 Identities=6% Similarity=-0.338 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
..+|..+-..+.+.|++++|...|++..+.. ..+..+|..+-..+.+.|
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc
Confidence 4444444444445555555555555444331 113344444444444433
No 37
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.99 E-value=0.0071 Score=30.81 Aligned_cols=66 Identities=8% Similarity=-0.136 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|+..... .| +...|..+=.++.+.|++++|+..|++..... .-+...|..+-.++...|+
T Consensus 38 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 38 EDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGE 104 (148)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 4667777776554 34 66777777777778888888888888876542 1244556666556655554
No 38
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.95 E-value=0.0099 Score=30.33 Aligned_cols=66 Identities=11% Similarity=-0.030 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+. .| +...|..+-..+.+.|++++|+..|++..+.. .-+...|..+-.++.+.|+
T Consensus 28 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 28 SKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccC
Confidence 4677777777654 34 67778888888888888888888888887652 1245667766666666654
No 39
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.95 E-value=0.0061 Score=33.75 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
+|...|++..+.. +.+..+|..+-..+.+.|++++|.+.|++..+
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444555444321 11344555555555555555555555555543
No 40
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.92 E-value=0.0088 Score=28.81 Aligned_cols=66 Identities=14% Similarity=-0.088 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+. .| +...+..+-..+.+.|++++|+..+++..+.. ..+...|..+-..+.+.|+
T Consensus 33 ~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 33 PQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 4556666665543 23 55666666666667777777777776665542 1234555555555555443
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.92 E-value=0.009 Score=32.37 Aligned_cols=67 Identities=16% Similarity=-0.103 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+.. +.+..+|..+-..+.+.|++++|.+.|++..+.. ..+..+|..+-..+.+.|+
T Consensus 60 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~ 126 (275)
T 1xnf_A 60 ALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGR 126 (275)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhcc
Confidence 57888888887652 2268899999999999999999999999998752 2256788888888887775
No 42
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.87 E-value=0.0085 Score=27.91 Aligned_cols=69 Identities=10% Similarity=-0.072 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHhc-ccC
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCK-QDAFSHSILINGGSAR-IRK 71 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~-~~~ 71 (71)
++|...|+...+.. +.+...|..+-..+.+.|++++|...|++..+..-. .+...|..+-..+.+. |++
T Consensus 23 ~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (112)
T 2kck_A 23 TESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKE 93 (112)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCS
T ss_pred HHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCH
Confidence 56788888876542 226778888888999999999999999999876311 1467777777777777 653
No 43
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.01 Score=28.81 Aligned_cols=66 Identities=15% Similarity=-0.044 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|.+..+. .| +...|..+-.++.+.|++++|+..|++..+.. .-+...|..+-.++...|+
T Consensus 21 ~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 21 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhC
Confidence 4677777777654 34 67888888888889999999999998887652 1245666666666666554
No 44
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.85 E-value=0.013 Score=29.65 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. ..+...+..+...+.+.|+
T Consensus 59 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 59 DRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGR 125 (186)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCc
Confidence 35556666655431 2245666666666677777777777777665542 2244555555555555443
No 45
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.82 E-value=0.0074 Score=28.89 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--Ccc----HHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGC--KQD----AFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~~li~~~~~~~~ 70 (71)
++|...|....... +.+...+..+-..+.+.|++++|...+++.....- .++ ..+|..+-..+.+.|+
T Consensus 21 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 94 (131)
T 1elr_A 21 DTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK 94 (131)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 56778888876642 33678888888999999999999999999876521 122 5667777777766664
No 46
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.81 E-value=9.8e-05 Score=44.89 Aligned_cols=44 Identities=7% Similarity=0.003 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+.+.+.++.+|.+.|+++++.++++ .|+..+|..+-..|.+.|+
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp ---------------CHHHHTTTTT-------CC----------------C
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC
Confidence 3444444444444444444444442 1333444444444444443
No 47
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.81 E-value=0.0099 Score=28.75 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCCCcC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPD-T---STCNALMDGFCLADRFDRARELLVSMGSKGCKQD----AFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~ 70 (71)
++|...|+...+. .|+ . ..+..+-..+.+.|++++|...|+...... |+ ..++..+-.++.+.|+
T Consensus 19 ~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~ 91 (129)
T 2xev_A 19 DDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGK 91 (129)
T ss_dssp HHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCC
Confidence 4667777777654 232 2 356666667778888888888888876642 32 3445555555555554
No 48
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.75 E-value=0.011 Score=27.65 Aligned_cols=67 Identities=10% Similarity=-0.106 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|+...... +.+...+..+-..+.+.|++++|...+++..+.. ..+...+..+-..+.+.|+
T Consensus 21 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 21 DDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence 45666666665431 2256667777777777788888888777776542 1245556666666655554
No 49
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.74 E-value=0.021 Score=31.56 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
+..++..+...+.+.|++++|.+.+++..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 199 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAV 199 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444444444455555555444444
No 50
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.021 Score=30.48 Aligned_cols=67 Identities=13% Similarity=-0.084 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...+++..+.. +.+..+|..+-..+.+.|++++|+..|++..+.. ..+..+|..+-..+.+.|+
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhh
Confidence 35566666665432 2256666777777777777777777777776542 2235556666666655554
No 51
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.73 E-value=0.014 Score=28.48 Aligned_cols=67 Identities=12% Similarity=-0.129 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|....... +.+...|..+-..+.+.|++++|...++...+.. .-+...|..+-.++.+.|+
T Consensus 26 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 92 (137)
T 3q49_B 26 PEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMES 92 (137)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHhh
Confidence 46777777776542 2257778888888888888888888888887653 2245667777666666654
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.73 E-value=0.021 Score=30.33 Aligned_cols=65 Identities=12% Similarity=-0.047 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. ..+...+..+...+.+.|
T Consensus 109 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 109 EAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcC
Confidence 3444444443321 1134444444444555555555555555444321 113334444444444333
No 53
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.71 E-value=0.014 Score=28.72 Aligned_cols=65 Identities=17% Similarity=0.020 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
++|...|+...+. .| +...|..+=..+.+.|++++|+..|++..+. .| +...+..+-.++.+.|+
T Consensus 34 ~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 34 AEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 5677888887764 45 6788888888889999999999999998765 34 45666666666666554
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.71 E-value=0.021 Score=30.46 Aligned_cols=67 Identities=10% Similarity=-0.179 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
++|...|....+..-.++...+..+-..+.+.|++++|++.|++..+. .| +...|..+-..+.+.|+
T Consensus 24 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~ 91 (228)
T 4i17_A 24 AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKN 91 (228)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHccc
Confidence 467777777766543356666666777777788888888888877654 23 44556666666655554
No 55
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.71 E-value=0.015 Score=28.53 Aligned_cols=66 Identities=9% Similarity=-0.107 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPD----TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+. .|+ ...|..+-..+.+.|++++|+..++...+.. ..+...|..+-.++.+.|+
T Consensus 45 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 114 (148)
T 2dba_A 45 GGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGR 114 (148)
T ss_dssp HHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCC
Confidence 4566777766644 454 5677777777778888888888888776542 1245555555555555443
No 56
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.70 E-value=0.0098 Score=31.28 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|.+. +.|+...|..+-..+.+.|++++|++.|++..... ..+...|..+-..+.+.|+
T Consensus 23 ~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 23 KGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3555555544 46788899999999999999999999999987653 2356677777777777665
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.70 E-value=0.022 Score=30.23 Aligned_cols=30 Identities=3% Similarity=0.160 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
+..++..+...+.+.|++++|.+.+++..+
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444445555555555555554443
No 58
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.67 E-value=0.0092 Score=35.42 Aligned_cols=68 Identities=6% Similarity=-0.017 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 1 MDEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 1 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+++|...|++..+.. +.+..+|..+-..+.+.|++++|++.|++..+.. ..+..+|..+...+.+.|+
T Consensus 41 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 41 FNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGN 108 (537)
T ss_dssp CC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCC
Confidence 357788888887652 2378899999999999999999999999998753 2356777777777777665
No 59
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.64 E-value=0.015 Score=27.66 Aligned_cols=29 Identities=3% Similarity=-0.086 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
...+..+-..+.+.|++++|...|++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34444444444455555555555544443
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.58 E-value=0.031 Score=31.44 Aligned_cols=66 Identities=11% Similarity=-0.033 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccH-H-HHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDA-F-SHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~-~~~~li~~~~~~~~ 70 (71)
++|..+|+.-.+. +.| +...|..+...+.+.|++++|..+|++..+. .|+. . .|..+...+.+.|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 149 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 149 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcC
Confidence 4566666666542 245 5668888888888888888888888888764 4532 2 67777766665543
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.57 E-value=0.0088 Score=32.30 Aligned_cols=68 Identities=15% Similarity=-0.071 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCc-cHHHHHHHHHHHHhccc
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSK------GCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~~~ 70 (71)
+|.+++.......-+....++..+-..+...|++++|+..+++.... +-.| ...+|..+-..+...|+
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 44444444432222235788899999999999999999999998754 2233 45667777777777665
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.52 E-value=0.039 Score=31.03 Aligned_cols=67 Identities=13% Similarity=-0.002 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCc--cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKG-CKQ--DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~~~ 70 (71)
++|..+|+...+. .| +...|..+...+.+.|++++|..+|++..... ..| +...|..++....+.|+
T Consensus 186 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 186 SVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3566777776543 23 67888888888888899999999999988763 455 35567777766655553
No 63
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.47 E-value=0.042 Score=30.63 Aligned_cols=67 Identities=7% Similarity=-0.120 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...+++..+.. +.+...+..+-..+.+.|++++|...+++..+.. ..+..+|..+...+.+.|+
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 46777777776542 2367788888888889999999999999887653 3366777777777766654
No 64
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.45 E-value=0.023 Score=31.42 Aligned_cols=68 Identities=7% Similarity=-0.130 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKG--------CKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...+++..+.. +.+..++..+...+.+.|++++|...+++..+.. ...+..+|..+-..+.+.|+
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 35566666665432 2256677777777777777777777777765421 12234566666666665554
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.43 E-value=0.0087 Score=32.88 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhc------CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 2 DEANGLAELMIQR------GVNP-DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 2 ~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
++|...+++.... +..| ...++..+-..+.+.|++++|.+.|++..+
T Consensus 170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677777777543 2234 466888899999999999999999999875
No 66
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.42 E-value=0.018 Score=31.25 Aligned_cols=66 Identities=11% Similarity=-0.071 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHhcc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQD--AFSHSILINGGSARI 69 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~ 69 (71)
++|...|++..+. .| +...+..+-..+.+.|++++|++.+++..+.+-.|+ ..+|..+-..+.+.|
T Consensus 20 ~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 20 AEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 4566666666543 23 344566666666666677777766666665321121 122445544444444
No 67
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.34 E-value=0.028 Score=31.37 Aligned_cols=67 Identities=6% Similarity=-0.191 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+.. +.+..++..+-..+.+.|++++|+..|++..+.. .-+...|..+-..+.+.|+
T Consensus 20 ~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 20 ADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 56778888876542 2257788888888888888888888888887652 1255667777777666654
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.28 E-value=0.035 Score=33.42 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSAR 68 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 68 (71)
++|...|++..+. .| +...|..+-..|.+.|++++|++.|++..+. .|+...+..+-..+...
T Consensus 120 ~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~ 183 (474)
T 4abn_A 120 PEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQL 183 (474)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHh
Confidence 6788888888765 44 5788999999999999999999999998876 47767777776666655
No 69
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.26 E-value=0.028 Score=26.47 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGS 66 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 66 (71)
++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+.. ..+...+..+-..+.
T Consensus 60 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 60 DEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 57888888887642 3367889999999999999999999999997652 123444544444443
No 70
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.027 Score=26.30 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|++..+. .| +...|..+-..+.+.|++++|+..|++..+.
T Consensus 21 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 21 REAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5678888887654 34 6788888888999999999999999999865
No 71
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.24 E-value=0.032 Score=26.88 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK-GCKQDAFSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 67 (71)
++|...|++..+. .| +...+..+-.++.+.|++++|+..|++.... .-.|+...|...+..+.+
T Consensus 44 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 44 RKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 5788888888765 34 5788888888999999999999999988754 334455556666655543
No 72
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.22 E-value=0.031 Score=26.54 Aligned_cols=67 Identities=6% Similarity=-0.135 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|+...... +.+...+..+-..+.+.|++++|.+.++...... ..+...|..+-..+.+.|+
T Consensus 29 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 29 EAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 57888888887642 2367888889999999999999999999988652 2246677777777776665
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.20 E-value=0.044 Score=28.14 Aligned_cols=65 Identities=12% Similarity=-0.159 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 3 EANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
.+...+...... .| +...+..+-..+.+.|++++|++.|++..+.. +-+..+|..+-..+.+.|+
T Consensus 91 ~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 91 AAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 344444444432 23 56666667777777777777777777776542 1245566666666666554
No 74
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.20 E-value=0.027 Score=26.56 Aligned_cols=64 Identities=19% Similarity=0.049 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK-GCKQDAFSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 67 (71)
++|...|+...+. .| +...|..+-..|.+.|++++|.+.|++..+. .-.++.....-+-..+.+
T Consensus 24 ~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~ 89 (100)
T 3ma5_A 24 SRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLK 89 (100)
T ss_dssp HHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Confidence 4677777777654 33 4667777777888888888888888777643 123455555555444443
No 75
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.15 E-value=0.064 Score=29.61 Aligned_cols=48 Identities=10% Similarity=-0.088 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 21 STCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
..+..+-..+.+.|++++|.+.+++..+.. ..+...+..+...+.+.|
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 334444444555555555555555554331 123344444444444443
No 76
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.13 E-value=0.033 Score=29.66 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 3 EANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
+|...|++..+. .| +...|..+-..+.+.|++++|+..|++..+
T Consensus 72 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 72 KAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444433 23 445555555555555555555555555544
No 77
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.11 E-value=0.044 Score=27.33 Aligned_cols=30 Identities=3% Similarity=-0.147 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
+..++..+-..+.+.|++++|...+++..+
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 75 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIE 75 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444555555555555555555443
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.10 E-value=0.016 Score=31.22 Aligned_cols=69 Identities=16% Similarity=-0.009 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhc------CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCc-cHHHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQR------GVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK------GCKQ-DAFSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~ 67 (71)
++|...+.+.... +-.| ...+++.+-..+...|++++|++.|++.... .-.| ...+|..+-..+..
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 139 (283)
T 3edt_B 60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN 139 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 4667777776543 2233 5778899999999999999999999998754 1123 45667777777777
Q ss_pred ccc
Q 042276 68 RIR 70 (71)
Q Consensus 68 ~~~ 70 (71)
.|+
T Consensus 140 ~g~ 142 (283)
T 3edt_B 140 QGK 142 (283)
T ss_dssp TTC
T ss_pred cCC
Confidence 665
No 79
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.06 E-value=0.077 Score=29.67 Aligned_cols=66 Identities=15% Similarity=-0.059 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...|.+..+. .| +...|..+-..+.+.|++++|+..+++..+.. .-+...+..+-.++.+.|+
T Consensus 21 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 21 PEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 5677778777654 44 67888888888889999999999999887652 2255667777677766665
No 80
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.04 E-value=0.055 Score=27.88 Aligned_cols=65 Identities=18% Similarity=0.053 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 4 ANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 4 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
|...++...+. .| +...+..+-..+.+.|++++|...|++..+..-.+ +...+..+...+...|+
T Consensus 93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 44555555443 55 57888888889999999999999999998764222 35578888888877765
No 81
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.03 Score=32.96 Aligned_cols=67 Identities=12% Similarity=-0.220 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHh-----cCCC-------c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 042276 2 DEANGLAELMIQ-----RGVN-------P-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSAR 68 (71)
Q Consensus 2 ~~a~~~~~~m~~-----~~~~-------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 68 (71)
++|...|+++.+ ..-. | +..++..+-..+.+.|++++|...|++..+.. |+...|..+...+.+.
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHC
Confidence 456667776655 2111 2 45677777777888888888888888887653 3366677777777666
Q ss_pred cc
Q 042276 69 IR 70 (71)
Q Consensus 69 ~~ 70 (71)
|+
T Consensus 284 ~~ 285 (514)
T 2gw1_A 284 ND 285 (514)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.96 E-value=0.027 Score=30.87 Aligned_cols=69 Identities=14% Similarity=-0.008 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhc-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCc-cHHHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQR-------GVNPDTSTCNALMDGFCLADRFDRARELLVSMGSK------GCKQ-DAFSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~ 67 (71)
++|...+++..+. .......++..+-..+...|++++|...+++.... +-.| ...++..+-..+..
T Consensus 44 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (311)
T 3nf1_A 44 EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 4677777777542 22335778888999999999999999999998754 2223 45667777777776
Q ss_pred ccc
Q 042276 68 RIR 70 (71)
Q Consensus 68 ~~~ 70 (71)
.|+
T Consensus 124 ~g~ 126 (311)
T 3nf1_A 124 RGK 126 (311)
T ss_dssp TTC
T ss_pred cCc
Confidence 665
No 83
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.96 E-value=0.035 Score=24.96 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 67 (71)
++|...|++..+.. +.+...+..+-..+.+.|++++|...|++..+.. .-+...+..+-..+.+
T Consensus 26 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 26 DEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 46777777776542 2257778888888889999999999998887652 1244555555555443
No 84
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.95 E-value=0.022 Score=28.17 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|.+..+. .| +...|+.+=.+|.+.|++++|++.|++..+.
T Consensus 25 ~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 25 EKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 5788888887764 45 6888998989999999999999999988754
No 85
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.93 E-value=0.072 Score=31.59 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
..+|..+-..+.+.|++++|...|++..
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.88 E-value=0.079 Score=33.99 Aligned_cols=65 Identities=14% Similarity=-0.133 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
++|.+.|++..+. .| +...|+.+=..+.+.|++++|++.|++..+. .| +...|..+...+.+.|+
T Consensus 94 ~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 94 QGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhccc
Confidence 3455555555433 33 4555666666666666666666666665543 23 34455555555555544
No 87
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.87 E-value=0.051 Score=25.99 Aligned_cols=65 Identities=9% Similarity=-0.136 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhcc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARI 69 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~ 69 (71)
++|...+++..+.. +.+...+..+-..+.+.|++++|.+.|++..+. .| +...+..+-..+.+.|
T Consensus 67 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 67 QLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 57788888887642 226788888889999999999999999998765 23 3455666666665544
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.83 E-value=0.078 Score=28.18 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 22 TCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
..+.+-..+.+.|++++|+..|++..+. .| +...|..+-..+...|+
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~ 103 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQ 103 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCC
Confidence 3444566677888888888888887765 23 45666666666665554
No 89
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.74 E-value=0.055 Score=25.46 Aligned_cols=51 Identities=20% Similarity=-0.048 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+...|..+-..+.+.|++++|+..|++..+.. .-+...|..+-.+|.+.|+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 56 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDR 56 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC
Confidence 67788888889999999999999999998763 1245677777777777765
No 90
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.71 E-value=0.1 Score=28.21 Aligned_cols=68 Identities=6% Similarity=-0.187 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP--DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|...++...+..-.| ...+|..+-..+.+.|++++|++.|++..+.. ..+..+|..+-..+.+.|+
T Consensus 54 ~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 54 DLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC
Confidence 46677777776533222 23346777777778888888888888776642 1244566666666666554
No 91
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.67 E-value=0.11 Score=31.36 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILIN 63 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 63 (71)
++|..+|+.+.+. .| +...|...+..+.+.|++++|.++|++.... .|+...|...+.
T Consensus 29 ~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 29 DKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 5678888888754 45 7888999999999999999999999999876 377766666554
No 92
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.66 E-value=0.091 Score=31.78 Aligned_cols=70 Identities=10% Similarity=-0.120 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHh---cCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CC-CCccH-HHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQ---RGVNPD----TSTCNALMDGFCLADRFDRARELLVSMGS-----KG-CKQDA-FSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~---~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~p~~-~~~~~li~~~~~ 67 (71)
++|..++++..+ .-+.|+ ..+++.+-.+|...|++++|+.++++... .| -.|++ .+|+-|-..|..
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 394 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 466777776643 334442 57889999999999999999999998864 23 34544 568888888888
Q ss_pred cccC
Q 042276 68 RIRK 71 (71)
Q Consensus 68 ~~~~ 71 (71)
+|++
T Consensus 395 qg~~ 398 (433)
T 3qww_A 395 LENK 398 (433)
T ss_dssp TTCH
T ss_pred ccCH
Confidence 7764
No 93
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.64 E-value=0.086 Score=27.00 Aligned_cols=46 Identities=17% Similarity=0.058 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|++..+. .| +..+|..+-..+.+.|++++|...+......
T Consensus 22 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 22 DGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL 68 (184)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5677777777654 34 5777777777888888888888887777654
No 94
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.61 E-value=0.059 Score=27.55 Aligned_cols=30 Identities=3% Similarity=-0.005 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
+...|..+-..+...|++++|...|++..+
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 72 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555543
No 95
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.55 E-value=0.084 Score=26.24 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 5 NGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 5 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
.+-++.+-...+.|+..+..+.+.+|-+.+++..|.++|+..+.+. .+....|.-+++-+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 30 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 3344455556789999999999999999999999999999997552 33345677776643
No 96
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.51 E-value=0.15 Score=29.35 Aligned_cols=50 Identities=12% Similarity=-0.165 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
..+|..+-.++.+.|++++|+..|++..+.. ..+...|..+-.+|.+.|+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 245 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVND 245 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 3556666666666666666666666665432 1244455555555544443
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.51 E-value=0.045 Score=27.75 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
++|...+..... ..| +...+-.+=..|.+.|++++|++.|++..+. .| +..+|..+-..+.+.|+
T Consensus 14 e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 14 ERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp HHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 345555554432 244 4556666778899999999999999999875 34 56778888777777765
No 98
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.45 E-value=0.14 Score=31.02 Aligned_cols=66 Identities=11% Similarity=-0.071 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
++|.+.+++..+. .| +..+|..+-..+.+.|++++|++.+++..+.. .-+..+|..+-.+|.+.|+
T Consensus 23 ~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 23 ENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3555555555443 33 45666666666666666666666666665541 1134455555555544443
No 99
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.42 E-value=0.1 Score=29.11 Aligned_cols=69 Identities=7% Similarity=-0.057 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----C-CCCccH-HHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVN-PD----TSTCNALMDGFCLADRFDRARELLVSMGS----K-GCKQDA-FSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~~-~~~~~li~~~~~~~~ 70 (71)
++|...|.+....... ++ ..+++.+-..|.+.|++++|+..|++..+ . +-.+.. .+|..+-..|.+.|+
T Consensus 132 ~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 4677777777653222 22 33688888888899999999998888873 1 222222 356666666666654
No 100
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.32 E-value=0.13 Score=33.08 Aligned_cols=64 Identities=14% Similarity=-0.073 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhcc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARI 69 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~ 69 (71)
++|...|++..+. .| +..+|+.+=..+.+.|++++|+..|++..+. .| +..+|..+-..+.+.|
T Consensus 26 ~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g 91 (723)
T 4gyw_A 26 EEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 91 (723)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3455555554433 23 3455555555555555555555555555443 22 2344444444444444
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.21 E-value=0.18 Score=30.78 Aligned_cols=28 Identities=18% Similarity=0.039 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
...|..+-..+.+.|++++|.+.|++..
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.16 E-value=0.11 Score=26.73 Aligned_cols=53 Identities=8% Similarity=-0.100 Sum_probs=41.2
Q ss_pred CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 16 VNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 16 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
+.| +...+..+=..+.+.|++++|+..|++.... .| +...|..+-.++.+.|+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcc
Confidence 345 4667777777888999999999999999876 34 56778877777777765
No 103
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.14 E-value=0.25 Score=29.78 Aligned_cols=64 Identities=9% Similarity=-0.031 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccH--HHHHHHHHHHHhcc
Q 042276 3 EANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDA--FSHSILINGGSARI 69 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~ 69 (71)
+|..+|+.-.+. +.| +...|..+...+.+.|++++|..+|++..+. .|+. ..|......+.+.|
T Consensus 304 ~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 304 EAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp HHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhc
Confidence 566666666532 245 6888888888888889999999999988774 4542 46776666555443
No 104
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.095 Score=24.35 Aligned_cols=51 Identities=6% Similarity=-0.149 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+...|..+-..+.+.|++++|++.|++..+.. ..+...|..+-.++.+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 53 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGE 53 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence 45667777888999999999999999987652 2256677777777777665
No 105
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.10 E-value=0.1 Score=24.65 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhcC--CCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 2 DEANGLAELMIQRG--VNPD----TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 2 ~~a~~~~~~m~~~~--~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
++|...+....... ..++ ..+|..+-..+.+.|++++|.+.|+...+.. |+...+..+-...
T Consensus 55 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 55 NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 46777777775432 1122 7788888889999999999999999998753 5655555544433
No 106
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.01 E-value=0.12 Score=30.56 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADR-FDRARELLVSMGS 48 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 48 (71)
++|...++...+. .| +...|+.+-..+.+.|+ +++|+..|++..+
T Consensus 114 ~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 114 ERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 3444445444432 23 34445555445555553 5555555555544
No 107
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.01 E-value=0.077 Score=31.93 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
+...|..+-..|.+.|++++|++.|++..
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 108
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.00 E-value=0.11 Score=24.73 Aligned_cols=62 Identities=15% Similarity=-0.095 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCccHHHHHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKG-CKQDAFSHSILINGG 65 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~ 65 (71)
++|...|+...+. .| +...|..+-..+.+.|++++|...|++..... -..+......+...+
T Consensus 36 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 36 DAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 5778888887764 34 57788888899999999999999999987541 112444444444443
No 109
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.97 E-value=0.15 Score=25.95 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...++...+. .| +...+..+-..+.+.|++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 4556666665543 23 3555666666666667777777766666544
No 110
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.95 E-value=0.18 Score=29.97 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=38.1
Q ss_pred Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCccHHHHHHH
Q 042276 17 NP-DTSTCNALMDGFCLADRFDRARELLVSMGS-----KGCKQDAFSHSIL 61 (71)
Q Consensus 17 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 61 (71)
.| +...|-.+|.++.+.|+..+|++.|+.... .|+.|+..+-...
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45 888999999999999999999999999864 4999998765443
No 111
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.86 E-value=0.31 Score=28.83 Aligned_cols=67 Identities=6% Similarity=-0.102 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcccC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIRK 71 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 71 (71)
++|...|++..+. .| +...|+.+=..+.+.|++++|+..|++..+.. .-+...|..+-.++.+.|++
T Consensus 149 ~eAl~~~~~al~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 149 HEEMNYITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCCh
Confidence 5677888887764 44 68888888888999999999999999998752 12667787777777776654
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.85 E-value=0.24 Score=27.67 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCccHHHHHHHHHHHHhccc
Q 042276 4 ANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKG-CKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 4 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~ 70 (71)
|...+++.... .| +...+..+-..+.+.|++++|+..|++..+.. -..+...+..+...+...|+
T Consensus 204 a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 204 EIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 45555555543 44 68888889999999999999999999998763 12236678888888877665
No 113
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.81 E-value=0.23 Score=30.52 Aligned_cols=70 Identities=6% Similarity=-0.121 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHh---cCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCccH-HHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQ---RGVNP----DTSTCNALMDGFCLADRFDRARELLVSMGSK-----G-CKQDA-FSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~---~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~-~~~~~li~~~~~ 67 (71)
++|..++++..+ .-+.| ...+++.+-..|...|++++|+.++++.... | -.|++ .+++.|-..|..
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 456666666532 22333 3678899999999999999999999887641 2 33443 568888888888
Q ss_pred cccC
Q 042276 68 RIRK 71 (71)
Q Consensus 68 ~~~~ 71 (71)
.|++
T Consensus 406 ~G~~ 409 (490)
T 3n71_A 406 AGHI 409 (490)
T ss_dssp TTCH
T ss_pred CCCH
Confidence 7763
No 114
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.81 E-value=0.12 Score=23.79 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhcCCCc-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTS-TCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|++..+. .| +.. .|..+=..+.+.|++++|.+.|++..+.
T Consensus 17 ~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 17 ENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5788888888765 44 556 7888888899999999999999999865
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.78 E-value=0.16 Score=25.21 Aligned_cols=47 Identities=13% Similarity=-0.080 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...+....+.. +.+...|..+-..+.+.|++++|...|++..+.
T Consensus 64 ~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 64 GYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46777777776542 236788888888999999999999999999765
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.67 E-value=0.21 Score=26.06 Aligned_cols=49 Identities=10% Similarity=-0.120 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 21 STCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
..|..+-..+.+.|++++|+..++...+.. ..+...|..+-.++...|+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 137 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGF 137 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccc
Confidence 556666666667777777777777766541 1244455555555544443
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.62 E-value=0.21 Score=28.68 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhcc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARI 69 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~ 69 (71)
++|...++...+. .| +...|..+-.++.+.|++++|+..|++..+. .| +...+..+-..+.+.|
T Consensus 213 ~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 213 SAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHH
Confidence 5677888887664 34 7888999999999999999999999999875 34 4556666666665544
No 118
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.61 E-value=0.3 Score=28.10 Aligned_cols=48 Identities=6% Similarity=-0.109 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 22 TCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
.|+.+-.++.+.|++++|+..++...+.. .-+...|..+-.+|...|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~ 279 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQ 279 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 55666666667777777777777665542 1245556666556655554
No 119
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.48 E-value=0.37 Score=28.09 Aligned_cols=45 Identities=16% Similarity=0.004 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
++|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.+
T Consensus 195 q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 195 TSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp THHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999998655 45544445555588899999999999997764
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=94.42 E-value=0.21 Score=25.17 Aligned_cols=54 Identities=9% Similarity=-0.027 Sum_probs=40.1
Q ss_pred CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 16 VNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 16 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
..| +...+..+-..+.+.|++++|+..|+...... ..+...|..+-.++.+.|+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 70 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQ 70 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhh
Confidence 345 56667777788899999999999999987652 2266677777667766665
No 121
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.36 E-value=0.16 Score=23.32 Aligned_cols=47 Identities=13% Similarity=-0.006 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCCCc--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP--DTSTCNALMDGFCLA-DRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 49 (71)
++|...|++..+.. +. +...+..+-..+.+. |++++|.+.++.....
T Consensus 57 ~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 57 EEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 57888888887652 22 578888999999999 9999999999999866
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.34 E-value=0.19 Score=24.92 Aligned_cols=46 Identities=9% Similarity=-0.120 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|+..... .| +...|..+-.++...|++++|...|+...+.
T Consensus 69 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 69 EQALQSYSYGALM--DINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5778888888765 34 6777888888999999999999999998764
No 123
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.33 E-value=0.26 Score=25.80 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=44.9
Q ss_pred HHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 7 LAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 7 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
-++.+....+.|+..+..+.+.+|-+.+++..|.++|+..+.+ +.+....|.-+++-+
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3344445668899999999999999999999999999999755 234455677776643
No 124
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.33 E-value=0.22 Score=28.99 Aligned_cols=47 Identities=9% Similarity=-0.038 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 3 EANGLAELMIQRGVN-PDTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
+|.+++.+-...+-. -+...+-..+..+.+.|+++.|.+.++.|.+.
T Consensus 118 eAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 118 KSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444444444332211 13444555555555666666666666665443
No 125
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.21 E-value=0.47 Score=28.57 Aligned_cols=70 Identities=6% Similarity=-0.118 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHh---cCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CC-CCccH-HHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQ---RGVNP----DTSTCNALMDGFCLADRFDRARELLVSMGS-----KG-CKQDA-FSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~---~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~p~~-~~~~~li~~~~~ 67 (71)
++|..+++...+ .-+.| ...+++.+..+|...|++++|+.++++... .| -.|++ .+++.|-..|..
T Consensus 304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~ 383 (429)
T 3qwp_A 304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH 383 (429)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 456677776653 22333 356888999999999999999999998864 12 34544 567778778877
Q ss_pred cccC
Q 042276 68 RIRK 71 (71)
Q Consensus 68 ~~~~ 71 (71)
.|++
T Consensus 384 ~g~~ 387 (429)
T 3qwp_A 384 QGMF 387 (429)
T ss_dssp TTCH
T ss_pred cCCH
Confidence 7763
No 126
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.17 E-value=0.34 Score=26.39 Aligned_cols=11 Identities=9% Similarity=0.147 Sum_probs=4.0
Q ss_pred CCHHHHHHHHH
Q 042276 34 DRFDRARELLV 44 (71)
Q Consensus 34 g~~~~a~~~~~ 44 (71)
+++++|++.|+
T Consensus 92 ~~~~~A~~~~~ 102 (273)
T 1ouv_A 92 QNTNKALQYYS 102 (273)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 33333333333
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.13 E-value=0.29 Score=25.49 Aligned_cols=68 Identities=12% Similarity=-0.117 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------------CCc-cHHHHHHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKG--------------CKQ-DAFSHSILINGGS 66 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------~~p-~~~~~~~li~~~~ 66 (71)
++|...|++..+.. +.+...|..+-..+.+.|++++|+..|+...+.. ..| +...+..+-..+.
T Consensus 54 ~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (213)
T 1hh8_A 54 TEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 132 (213)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH
Confidence 56788888876542 2367889999999999999999999999998642 122 2256666666666
Q ss_pred hccc
Q 042276 67 ARIR 70 (71)
Q Consensus 67 ~~~~ 70 (71)
+.|+
T Consensus 133 ~~g~ 136 (213)
T 1hh8_A 133 KKEE 136 (213)
T ss_dssp HTTC
T ss_pred HccC
Confidence 6654
No 128
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=94.11 E-value=0.3 Score=25.69 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccH
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDA 55 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 55 (71)
+++..+|..|..+|+.- -..-|-..-..+-..|++.+|.++|+.=.+++-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 35788999999999887 4667777777788899999999999999998877743
No 129
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=94.06 E-value=0.56 Score=28.57 Aligned_cols=64 Identities=14% Similarity=0.031 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSAR 68 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 68 (71)
++|.+.+++..+. .| +...+..+-..+.+.|++++|.+.|++..+.. .-+...+..+...+.+.
T Consensus 74 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 74 AEAAVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 5778888887664 34 67888889899999999999999999987652 22456777777777766
No 130
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.89 E-value=0.3 Score=30.81 Aligned_cols=66 Identities=9% Similarity=-0.063 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhcccC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIRK 71 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~ 71 (71)
++|...|++..+. .| +...|..+=..+.+.|++++|+..|++..+. .| +...|..+-..+.+.|++
T Consensus 450 ~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 450 AKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCh
Confidence 4677777777654 34 5677777777888888999999888888765 23 446666666666666653
No 131
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.89 E-value=0.4 Score=26.75 Aligned_cols=69 Identities=10% Similarity=-0.120 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH------HHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQR----GVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAF------SHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~~~ 70 (71)
++|...|++..+. +-.+ ...+++.+-..+.+.|++++|+..|++..+........ .|..+-.++...|+
T Consensus 135 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 214 (292)
T 1qqe_A 135 AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD 214 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC
Confidence 4566666665432 1111 14568888889999999999999999998753222211 34555455555443
No 132
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.86 E-value=0.25 Score=23.92 Aligned_cols=50 Identities=6% Similarity=-0.134 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHhccc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQD----AFSHSILINGGSARIR 70 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~ 70 (71)
+...+..+-..+.+.|++++|.+.|++..+. .|+ ...|..+-..+.+.|+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~ 80 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLED 80 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHcc
Confidence 6778888888999999999999999999875 455 5667777666666654
No 133
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.80 E-value=0.26 Score=23.76 Aligned_cols=52 Identities=6% Similarity=-0.084 Sum_probs=40.7
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 18 PDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 18 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
.+...|..+-..+.+.|++++|+..|+...... ..+...|..+-..+.+.|+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 58 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ 58 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcC
Confidence 367888888899999999999999999987653 2246677777777766665
No 134
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=93.66 E-value=0.48 Score=26.45 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|++..+. .| +...+..+-..+.+.|++++|...+++....
T Consensus 134 ~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 134 TDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 4566777776554 44 5667777777788888888888888776543
No 135
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=93.54 E-value=0.45 Score=25.77 Aligned_cols=46 Identities=9% Similarity=-0.036 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhcCCCc-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-D---TSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|+...+. .| + ...+..+-..+.+.|++++|+..|+...+.
T Consensus 32 ~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 32 DRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp HHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 5788888888765 34 3 567777778888999999999999999875
No 136
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.51 E-value=0.28 Score=23.22 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|..++++..+. .| ++.....+=..+.+.|++++|+..++.+.+.
T Consensus 26 ~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 26 DEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4677788777664 56 5666666667788999999999999999876
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.43 E-value=0.53 Score=26.15 Aligned_cols=69 Identities=7% Similarity=-0.086 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhc-CCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-Ccc----HHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQR-GVNPDT----STCNALMDGFCLADRFDRARELLVSMGSKGC-KQD----AFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~-~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~ 70 (71)
++|..++++..+. ...|+. ..+..+-..+...+++++|+..|++...... .++ ..+|+.+-..|.+.|+
T Consensus 92 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 170 (293)
T 3u3w_A 92 KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY 170 (293)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCC
Confidence 4677778777653 223332 2344566667778899999999999986322 223 2357777777766664
No 138
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.34 E-value=0.56 Score=28.15 Aligned_cols=49 Identities=6% Similarity=-0.179 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
...|..+-.++.+.|++++|+..|++..+.. .-+...|..+-.+|.+.|
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g 365 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMN 365 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcc
Confidence 3555555555666666666666666655431 113444544444444444
No 139
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.30 E-value=0.51 Score=25.65 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCL----ADRFDRARELLVSMGSKGCKQDAFSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 67 (71)
++|...|+...+.+ +...+..+-..+.+ .+++++|++.|++..+.+ +..++..+-..|..
T Consensus 23 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 23 TQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhC
Confidence 56788888877632 56777778888888 999999999999998876 56666666666654
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=93.26 E-value=0.24 Score=24.12 Aligned_cols=46 Identities=15% Similarity=-0.073 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|+...+. .| +...+..+-..+.+.|++++|+..|++..+.
T Consensus 68 ~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 68 GLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677788877654 45 6778888889999999999999999998764
No 141
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=93.21 E-value=0.48 Score=25.05 Aligned_cols=52 Identities=12% Similarity=-0.097 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
|...+...=..+.+.|++++|++.|++..+..-.++...+..+-..+.+.|+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 57 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK 57 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc
Confidence 5567777777888999999999999999876533666676666666666654
No 142
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.57 Score=25.83 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccH
Q 042276 3 EANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDA 55 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 55 (71)
++..+|..|..+|+.- -..-|-..-..+-..|++.+|.++|+.=.+++-+|-.
T Consensus 97 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 97 ESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 7889999999998887 4677777777788899999999999999988877743
No 143
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.19 E-value=0.26 Score=21.91 Aligned_cols=51 Identities=14% Similarity=0.006 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+...+..+-..+.+.|++++|+..|++..+.. ..+...+..+-..+.+.|+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 58 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD 58 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhh
Confidence 45677777788899999999999999987653 2255667777667766654
No 144
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=93.16 E-value=0.5 Score=25.16 Aligned_cols=55 Identities=7% Similarity=0.109 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH
Q 042276 2 DEANGLAELMIQRGVNPD-TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAF 56 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 56 (71)
+++..+|..|..+|+.-. ..-|-..-..+-..|++.+|.++|+.-.+++-+|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 456789999999998874 6667777777778999999999999999998888543
No 145
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.15 E-value=0.37 Score=25.42 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLA-----------DRFDRARELLVSMGSKGCKQDAFSHSILINGGS 66 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 66 (71)
++|...|++..+. .| +..+|..+=.+|.+. |++++|++.|++..+. .|+...|.--+...-
T Consensus 63 ~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 4777778777655 55 577888888888876 4899999999999876 577777766665543
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.14 E-value=0.41 Score=28.96 Aligned_cols=46 Identities=13% Similarity=-0.073 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...+++..+. .| +..+|..+-.+|.+.|++++|++.|++..+.
T Consensus 57 ~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 57 GYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788888888765 44 6788888999999999999999999998765
No 147
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=92.92 E-value=0.27 Score=26.86 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPD-----TSTCNALMDGFCLADRFDRARELLVSMGSK----GCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+. .|+ ...+..+-..+...|++++|.+.+++.... +-.| ...++..+-..+...|+
T Consensus 22 ~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 22 RAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp HHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 5788888888765 332 467888888899999999999998886542 2222 23455666666655554
No 148
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=92.92 E-value=0.41 Score=23.45 Aligned_cols=55 Identities=5% Similarity=-0.088 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-HHHHHH
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQD-AFSHSI 60 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 60 (71)
++|...|+...+. .| +...|..+-.++.+.|++++|++.|++..+. .|+ ...+..
T Consensus 64 ~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~ 120 (126)
T 4gco_A 64 QRALDDCDTCIRL--DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEEAREG 120 (126)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHHHHH
Confidence 5677778777654 44 6788999999999999999999999999875 454 333433
No 149
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=92.90 E-value=0.23 Score=28.47 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhcCCCcC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPD-T----STCNALMDGFCLADRFDRARELLVSMGSK----GCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+. .|+ . .+|..+-..+...|++++|+..+++..+. +-.| ...++..+-..+...|+
T Consensus 65 ~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 141 (411)
T 4a1s_A 65 RAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR 141 (411)
T ss_dssp HHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 5678888888765 332 2 57788888888999999999998887643 2122 33556666666655554
No 150
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=92.78 E-value=0.72 Score=27.01 Aligned_cols=49 Identities=6% Similarity=-0.164 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
..+|+.+-.++.+.|++++|++.+++..+.. .-+...|..+-.+|.+.|
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 321 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLK 321 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHcc
Confidence 4555555555556666666666666655431 113444444444444444
No 151
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.77 E-value=0.71 Score=25.83 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQD 54 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 54 (71)
+++..+|..|..+|+.- -..-|-..-..+-..|++.+|..+|+.=.+++-+|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 35678999999999887 466777777778889999999999999998887774
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.48 Score=22.64 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...++...+. .| +...|..+-..+.+.|++++|...|++..+.
T Consensus 55 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 55 PEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 5677788877654 44 6788888889999999999999999998765
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.14 E-value=0.48 Score=22.48 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhcCCCc-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-D---TSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|+...+. .| + ...+..+-..+.+.|++++|...|+...+.
T Consensus 56 ~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 56 QLAEAQFRDLVSR--YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5788888888764 33 2 566777778899999999999999999875
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=91.97 E-value=0.9 Score=25.19 Aligned_cols=69 Identities=9% Similarity=-0.108 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHh----cCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCcc-HHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQ----RGVNP--DTSTCNALMDGFCLADRFDRARELLVSMGSK----GCKQD-AFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~----~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+ ..-.+ ...+++.+-..|.+.|++++|+..+++..+. +.... ..+|..+-..+.+.|+
T Consensus 172 ~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 467777777652 11112 2368888888999999999999999987643 11111 4566666666666664
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=91.97 E-value=0.71 Score=23.98 Aligned_cols=62 Identities=11% Similarity=-0.049 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 67 (71)
++|...++...+. .| +...+..+-.++.+.|++++|++.|++..+. .| +...+..+-..+..
T Consensus 105 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 105 PKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHH
Confidence 4677777777654 34 6788888888999999999999999998765 34 44555555554443
No 156
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=91.85 E-value=0.5 Score=27.12 Aligned_cols=50 Identities=4% Similarity=-0.194 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CccHHHHHHHHHHHHhccc
Q 042276 21 STCNALMDGFCLADRFDRARELLVSMGSK----GC-KQDAFSHSILINGGSARIR 70 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~~~ 70 (71)
.+++.+=..|.+.|++++|++.|++..+. +- .....++..+-..+.+.|+
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC
Confidence 45666666677777777777777776541 22 2234455555555555544
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=91.62 E-value=0.52 Score=24.14 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
...+++.+-..+...|++++|...+++...
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666677777888887777776654
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=91.60 E-value=0.7 Score=23.22 Aligned_cols=46 Identities=17% Similarity=0.036 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|+...+. .| +...|..+-..+.+.|++++|...|++..+.
T Consensus 62 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 62 EKAAEDAELATVV--DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5778888888765 34 6888999999999999999999999998764
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=91.58 E-value=0.86 Score=27.33 Aligned_cols=63 Identities=6% Similarity=-0.013 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSAR 68 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 68 (71)
++|...++...+. .| +...|..+=.+|.+.|++++|+..|++..+. .| +...+..+-.++.+.
T Consensus 334 ~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 334 TKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 4677777777654 34 6888888889999999999999999999865 34 345555555555443
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=91.30 E-value=0.69 Score=22.55 Aligned_cols=49 Identities=6% Similarity=-0.152 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
...+.-+=..+.+.|++++|++.|++..+. .| +...|+.+-.+|.+.|+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~ 57 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKK 57 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhh
Confidence 345555666788999999999999998865 34 56777777777777765
No 161
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.18 E-value=0.71 Score=24.25 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc
Q 042276 2 DEANGLAELMIQRGVNP---DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQD 54 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 54 (71)
+++..+|++..+.. .| ....|+.-+ ++.+.+++++|.+.++...+. +|+
T Consensus 52 ~~gI~lLe~ll~~~-~p~~~rd~lY~LAv-~~~kl~~Y~~A~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 52 RKGIVLLEELLPKG-SKEEQRDYVFYLAV-GNYRLKEYEKALKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHHHHHS-CHHHHHHHHHHHHH-HHHHTSCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHhcC-CccchHHHHHHHHH-HHHHccCHHHHHHHHHHHHhc--CCC
Confidence 35677777776653 23 122343333 557888888888888887765 454
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.12 E-value=0.8 Score=22.95 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
...|..+-.++.+.|++++|+..++...+.. ..+...|..+-.++...|+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~ 112 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWK 112 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhc
Confidence 3556666666667777777777777665542 1244555555555555544
No 163
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=90.93 E-value=0.73 Score=23.52 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
++|...|++..+..-.+ +...+..+...+...|+.++|...|++..
T Consensus 125 ~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 125 EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 57888888887663322 36688999999999999999999998764
No 164
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=90.89 E-value=0.68 Score=26.24 Aligned_cols=67 Identities=15% Similarity=0.048 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhcCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCcc-HHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNP-D----TSTCNALMDGFCLADRFDRARELLVSMGSK----GCKQD-AFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~ 70 (71)
++|...|++..+. .| + ..+|..+-..+...|++++|...+++.... +-.|. ..++..+-..+...|+
T Consensus 26 ~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 102 (406)
T 3sf4_A 26 RAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 102 (406)
T ss_dssp HHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence 5778888888765 33 2 357788888888999999999998886532 22222 3455566666655554
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=90.88 E-value=1.2 Score=24.73 Aligned_cols=50 Identities=4% Similarity=-0.122 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
+...+..+-..+.+.|++++|+..|++.... .| +...|..+-..+.+.|+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~ 53 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQ 53 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcC
Confidence 4566777778889999999999999999875 34 66777777777777665
No 166
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=90.56 E-value=0.71 Score=26.51 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 21 STCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
.+++.+=..|.+.|++++|++.|++...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555556666666666666666554
No 167
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=90.44 E-value=0.83 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
..+++.+-..+.+.|++++|+..|++...
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566666666677777777777766654
No 168
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=90.08 E-value=2 Score=25.80 Aligned_cols=41 Identities=5% Similarity=-0.108 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHH
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSIL 61 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 61 (71)
+..+|.++-..+...|++++|...+++....+ |+...|..+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~ll 316 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLL 316 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHH
Confidence 56666666555555677777777777766654 565555433
No 169
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=89.92 E-value=0.39 Score=23.29 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 21 STCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
.++..+-..+...|++++|.+.+++...
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677777778888888888888887654
No 170
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.89 E-value=1.9 Score=27.28 Aligned_cols=67 Identities=3% Similarity=-0.263 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHh------cCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQ------RGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~------~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
++|.+.+++... ....| +...+..+-..+.+.|++++|++.|++..+. .| +...|..+=.++.+.|+
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCC
Confidence 467777777761 12344 6778888888999999999999999999865 23 55677766666666654
No 171
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=89.69 E-value=0.82 Score=23.00 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 24 NALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 24 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
-.+++.+...+..-.|.++++.+.+.+-..+..|..-.++.+.+.|
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3566677777777889999999988876778888877788877765
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=89.49 E-value=0.87 Score=20.80 Aligned_cols=46 Identities=11% Similarity=0.041 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...+++..+. .| +...+..+-..+.+.|++++|.+.+++..+.
T Consensus 55 ~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 55 QKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4677788777654 34 6788888889999999999999999998765
No 173
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=89.37 E-value=1.4 Score=23.09 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=47.4
Q ss_pred HHHHHH-HHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCccHHHHHHHHHHHHhcc
Q 042276 5 NGLAEL-MIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSK--GCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 5 ~~~~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~ 69 (71)
.+-+.+ +++.|++++. --..++..+.+.+..-.|.++++.+.+. +-..+..|..--|+.+.+.|
T Consensus 17 ~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 17 LERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 333444 4568888754 4466777888888888999999999887 66678888777778877765
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=89.25 E-value=1.2 Score=22.23 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH-HHHHHH
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAF-SHSILI 62 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li 62 (71)
++|...+....+. .| +...|..+-.++...|++++|...|+...+. .|+.. .....+
T Consensus 80 ~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l 138 (162)
T 3rkv_A 80 HEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 4667777777654 45 6888888999999999999999999998776 46544 433333
No 175
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=89.12 E-value=1.6 Score=23.25 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNPD----TSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|+.+.+. .|+ ...+..+-.++.+.|++++|.+.++.+...
T Consensus 164 ~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 164 VAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 3556666666543 232 245666666777777777777777766654
No 176
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=89.09 E-value=0.79 Score=23.38 Aligned_cols=57 Identities=12% Similarity=-0.024 Sum_probs=39.6
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 12 IQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 12 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
++.|++++ .--..++..+.+.+..-.|.++++.+.+.+-..+..|..--|+.+.+.|
T Consensus 6 r~~g~r~T-~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 6 PPVKGRAT-RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp ----CHHH-HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCccC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444432 2335667777777777889999999998877778888888888887766
No 177
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=88.98 E-value=0.84 Score=24.88 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
..++..+-..+.+.|++++|...+++...
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44556666666677777777777666643
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=88.92 E-value=2.3 Score=24.90 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSA 67 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 67 (71)
++|...+++..+. .| +...|..+-.+|.+.|++++|++.|++..+. .| +...+..+-..+.+
T Consensus 290 ~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~ 353 (370)
T 1ihg_A 290 QGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQK 353 (370)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 5677788777754 45 6788888888999999999999999998765 34 44555555544443
No 179
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=88.78 E-value=0.26 Score=21.93 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHH-HhcCC
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGF-CLADR 35 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~ 35 (71)
++|...|-+|.+..-.++.-||.-.|... ++.-+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 45666666665433333445666666555 44443
No 180
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=88.78 E-value=1.1 Score=21.15 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhc------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccH
Q 042276 2 DEANGLAELMIQR------GVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDA 55 (71)
Q Consensus 2 ~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 55 (71)
+.|...|++..+. .-.+...++..+-.++.+.|+++.|...+++..+. .|+.
T Consensus 22 ~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 22 YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 3455556555432 12346778889999999999999999999999764 4543
No 181
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=88.16 E-value=1.8 Score=22.89 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 042276 4 ANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKG 50 (71)
Q Consensus 4 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 50 (71)
|.+.|....+.| +...+..+=..|.+.+++++|++.|++..+.|
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g 48 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG 48 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 444454444443 44444444445555566666666666555544
No 182
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=88.03 E-value=1.1 Score=25.43 Aligned_cols=28 Identities=14% Similarity=0.365 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
..++..+-..+.+.|++++|...+++..
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4455555556666666666666666554
No 183
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=87.78 E-value=2.7 Score=25.24 Aligned_cols=56 Identities=11% Similarity=-0.058 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSIL 61 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 61 (71)
++|...++.....+ |+...|..+=..+.-.|++++|.+.|.+.... .|...||...
T Consensus 294 d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 294 DESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 57788888888775 78777766666777899999999999888766 4666666543
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=87.77 E-value=2.6 Score=24.18 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 1 MDEANGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 1 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
+++|...++...+. .| +...|..+-.+|...|++++|+..|++..+.
T Consensus 246 ~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 246 YDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35777888877654 44 6888899999999999999999999998754
No 185
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=87.71 E-value=1.2 Score=22.52 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=43.2
Q ss_pred HHHhcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 10 LMIQRGVNPDTSTCNALMDGFCLAD-RFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 10 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
.+++.|++++..= -.++..+...+ ..-.|.++++.+.+.+-..+..|..--++.+.+.|
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4567787766443 45566666666 67789999999998877778888887888877665
No 186
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=87.69 E-value=1.8 Score=22.20 Aligned_cols=59 Identities=7% Similarity=-0.014 Sum_probs=43.3
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 9 ELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 9 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+.+++.|++++..= ..++..+.+.+ .-.|.++++.+.+.+-..+..|..--|+.+.+.|
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34567888876543 44555666666 6789999999998877778888877788877765
No 187
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=87.31 E-value=3 Score=24.36 Aligned_cols=52 Identities=15% Similarity=-0.030 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C--CCc-cHHHHHHHHHHHHhccc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSK-----G--CKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~li~~~~~~~~ 70 (71)
....||.+=..+...|+.++|++.|++-.+. + ..| ...+|+-+-..|...|+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~ 109 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR 109 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC
Confidence 4678998888899999999999999876531 1 233 34678887777777665
No 188
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.90 E-value=2.6 Score=30.05 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
|...|.-+...+.+.|++++|.+.+...++.. ++....+.+..+|++.+
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 56666677777777777777777776655543 22222223555555544
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=86.59 E-value=2.3 Score=22.37 Aligned_cols=67 Identities=15% Similarity=-0.043 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhcCCCcC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CCCccH-HHH----
Q 042276 2 DEANGLAELMIQRGVNPD-------------TSTCNALMDGFCLADRFDRARELLVSMGSK-----GCKQDA-FSH---- 58 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~-~~~---- 58 (71)
++|...|+...+. .|+ ...|+..=.++.+.|++++|+..+++..+. .+.|+. ..|
T Consensus 28 eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~ 105 (159)
T 2hr2_A 28 DEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV 105 (159)
T ss_dssp HHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHH
Confidence 4667777766543 222 338888888999999999999999998764 225643 445
Q ss_pred HHHHHHHHhccc
Q 042276 59 SILINGGSARIR 70 (71)
Q Consensus 59 ~~li~~~~~~~~ 70 (71)
...=.++.+.|+
T Consensus 106 ~~rG~aL~~lgr 117 (159)
T 2hr2_A 106 YSRALALDGLGR 117 (159)
T ss_dssp HHHHHHHHHTTC
T ss_pred HhHHHHHHHCCC
Confidence 444444444443
No 190
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=86.59 E-value=1.4 Score=19.99 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=44.0
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 9 ELMIQRGVNPDTSTCNALMDGFCLAD-RFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 9 ~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+.|.+.|+..+..- -.++..+.+.+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44667888877654 45667777664 56778899999988766667888888888877665
No 191
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=86.58 E-value=1.4 Score=25.25 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 22 TCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
++..+-..+.+.|++++|...|++..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 55555556666666666666665554
No 192
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=86.15 E-value=2.6 Score=24.60 Aligned_cols=30 Identities=7% Similarity=-0.022 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
...+|+-+-.+|...|++++|...+++..+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 467899999999999999999999887754
No 193
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=85.98 E-value=2.2 Score=21.65 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCc-cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGS----KGCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~ 70 (71)
++|.+.++.... .......+++.+-..+...|++++|+..+++... .|..| ...++..+-..+...|+
T Consensus 9 ~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 9 ALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp HHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 355553333322 1122577888888889999999999999998875 22222 23455555555555554
No 194
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=85.84 E-value=3 Score=23.02 Aligned_cols=69 Identities=7% Similarity=-0.036 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhcC---CCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---C-CCCc--cHHHHHHHHHHHHhccc
Q 042276 2 DEANGLAELMIQRG---VNPD--TSTCNALMDGFCLADRFDRARELLVSMGS---K-GCKQ--DAFSHSILINGGSARIR 70 (71)
Q Consensus 2 ~~a~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~~~ 70 (71)
++|...+.+..+.. ..+. ..+|+.+-..|.+.|++++|+..|++..+ . +-.+ ...+|..+-..|.+.|+
T Consensus 132 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 2qfc_A 132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh
Confidence 46677777665321 1222 45888888899999999999999998863 1 1111 12467777777777665
No 195
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=85.80 E-value=2.2 Score=21.44 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 6 GLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 6 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
.+|+.+....+.|++..-=.-|....+.++++.|.++...+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 46777777778777666666677777899999999999998764
No 196
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.71 E-value=2.9 Score=29.82 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcccC
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIRK 71 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 71 (71)
+..+|.-+=.++.+.|++++|.+.|.+- -|...|.-++..|.+.|+|
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCH
Confidence 5788888888999999999999999664 2677888888888888764
No 197
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.46 E-value=2.7 Score=23.36 Aligned_cols=48 Identities=15% Similarity=-0.093 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNPDT------STCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|++.......... ..|..+-.++...|++++|...|++..+.
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5788888888765332221 15667777888999999999999998753
No 198
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=84.86 E-value=2.6 Score=21.49 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=45.1
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 9 ELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 9 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+.+.+.|++++.. --.++..+...+..-.|.++++.+.+.+-..+..|..--|+.+.+.|
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4466788876644 34556666667777889999999998877778888888888887765
No 199
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=84.57 E-value=2.8 Score=21.56 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=44.6
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 9 ELMIQRGVNPDTSTCNALMDGFCLAD-RFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 9 ~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+.+.+.|++++..= -.++..+...+ ..-.|.++++.+.+.+-..+..|..--|+.+.+.|
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44667888776543 34566666665 67789999999998877778888888888887765
No 200
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=84.42 E-value=4.2 Score=23.38 Aligned_cols=21 Identities=14% Similarity=-0.064 Sum_probs=11.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 042276 29 GFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 29 ~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++.+.|+.++|..+|+++...
T Consensus 217 aL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 344555555555555555443
No 201
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=84.23 E-value=3.2 Score=21.98 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhcCC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGV-NP-DTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...|+.+.+..- .| ....+..+-..+.+.|++++|+..|++..+.
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 578889999876421 12 2356777788899999999999999999865
No 202
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=84.12 E-value=3 Score=21.47 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=43.2
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 9 ELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 9 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+.+.+.|++++. ---.++..+...+..-.|.++++.+.+.+-..+..|..--|+.+.+.|
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345667777543 344566677777778899999999988876778888888888887765
No 203
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=83.61 E-value=4.5 Score=23.12 Aligned_cols=47 Identities=11% Similarity=0.016 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHh----cCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 2 DEANGLAELMIQ----RGV-NPDTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 2 ~~a~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
++|...+++..+ .+. +....++..+-..+.+.|++++|...+++..+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456666666654 133 33577888888999999999999999988764
No 204
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=83.43 E-value=4.6 Score=23.11 Aligned_cols=48 Identities=10% Similarity=-0.042 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHh----cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQ----RGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++|...+.+..+ .+-+....++..+-..+.+.|++++|...+++..+.
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456666666644 122224777888888999999999999999998753
No 205
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.06 E-value=3 Score=20.75 Aligned_cols=33 Identities=9% Similarity=-0.076 Sum_probs=23.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 042276 28 DGFCLADRFDRARELLVSMGSKGCKQDAFSHSILING 64 (71)
Q Consensus 28 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 64 (71)
..+.+.|++++|..+.+.+ +.||...|-.|-.+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~ 79 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN----PWPALEPWFALCEW 79 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH
Confidence 3456788888887765544 48999999887654
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=82.95 E-value=5.2 Score=23.41 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCCcC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 042276 3 EANGLAELMIQRGVNPD---TSTCNALMDGFCL-----ADRFDRARELLVSMGSKGCKQDAFSHSILINGGSA 67 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 67 (71)
+|+..++...+. .|+ ...|.++-..|.+ -|+.+.|.+.|++..+..-.-+..++...-..++.
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 344444444433 664 6678888888888 48889999998888765311124555555555554
No 207
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.93 E-value=3.1 Score=20.75 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHH--HHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 042276 3 EANGLAELMIQRGVNPDTSTCNAL--MDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILING 64 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 64 (71)
+|..+-+.+...+. .-..+| +..+.+.|++++|..+.+.+ +.||...|-.|-.+
T Consensus 25 EA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~ 80 (116)
T 2p58_C 25 EANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY 80 (116)
T ss_dssp HHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH
Confidence 45555555544432 222333 34466889999998877655 48999999887655
No 208
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=81.56 E-value=4.5 Score=21.74 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHhccc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQD----AFSHSILINGGSARIR 70 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~ 70 (71)
+...+-..-..+.+.|++++|...|+...+.. |+ ...+..+-.++.+.|+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~ 67 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKE 67 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCc
Confidence 45556666667889999999999999998762 43 4566666666666665
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=80.74 E-value=3.8 Score=24.82 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHh---cCC---Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 2 DEANGLAELMIQ---RGV---NP-DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 2 ~~a~~~~~~m~~---~~~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
++|..+++.... .-. .| ...+++.+=..|...|++++|+.++++..+
T Consensus 357 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 456666665532 112 33 367788899999999999999999988764
No 210
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=79.05 E-value=3.2 Score=18.92 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHhh-CCCCccHHHHHHHHHHHHh
Q 042276 35 RFDRARELLVSMGS-KGCKQDAFSHSILINGGSA 67 (71)
Q Consensus 35 ~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~ 67 (71)
..++|...|.+|.. .++.|+ .+|.-.+..++.
T Consensus 13 t~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~ 45 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSN-ASWEQAMKMIIN 45 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHcc
Confidence 34556666666643 344333 455555554443
No 211
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=79.04 E-value=5.7 Score=21.36 Aligned_cols=41 Identities=20% Similarity=0.086 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
+.|.++.+++. +...|+.+=+...+.|+++-|++.|.....
T Consensus 22 ~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 22 DAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 44555555542 688999999999999999999999887763
No 212
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=78.90 E-value=4.8 Score=20.42 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 2 DEANGLAELMIQRGVNP---DTSTCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
++.+.++.+.....-.| |+..+...+..+.+..+++.+..+++-|.
T Consensus 39 ~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~ 87 (124)
T 3vu7_H 39 NDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMK 87 (124)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 45677777776655566 67777777777788899999888755553
No 213
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=78.51 E-value=4.8 Score=24.79 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHh---cCC---Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 2 DEANGLAELMIQ---RGV---NP-DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 2 ~~a~~~~~~m~~---~~~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
++|..+++.... .-+ .| ...+++.+=..|...|++++|+.++++...
T Consensus 368 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 368 EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455555555432 222 33 467888899999999999999999988763
No 214
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=78.44 E-value=4.2 Score=19.44 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHHHhcCCCcCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 7 LAELMIQRGVNPDTSTCNALMDGFCL-A-DRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 7 ~~~~m~~~~~~p~~~~~~~li~~~~~-~-g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
+++.+.+.|+- +..-...+ -.. . ...+.|.++++.+..+| ..+|..+++++.+.|+
T Consensus 26 vld~L~~~~vl-t~~~~e~I---~~~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 26 LWDVLLSRELF-RPHMIEDI---QRAGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQ 83 (97)
T ss_dssp THHHHHHTTSS-CHHHHHHH---HTSTTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCC-CHHHHHHH---HhccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCc
Confidence 56777777543 22222222 222 2 57788999999998886 5678888888776553
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=78.19 E-value=2.1 Score=26.87 Aligned_cols=31 Identities=19% Similarity=0.050 Sum_probs=27.1
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 18 PDTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 18 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
.+...|..+-..+.+.++++.|++.|..+..
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 3678999999999999999999999998753
No 216
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=77.94 E-value=7.3 Score=22.01 Aligned_cols=51 Identities=16% Similarity=-0.063 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--Cc--cHHHHHHHHHHHHhccc
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGSKGC--KQ--DAFSHSILINGGSARIR 70 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p--~~~~~~~li~~~~~~~~ 70 (71)
...+..+-..+...|++++|...+++.....- .+ ...+|..+-..+...|+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 189 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC
Confidence 44566666778888999999998888764321 11 22345555555554443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=77.79 E-value=5.3 Score=24.06 Aligned_cols=47 Identities=13% Similarity=-0.076 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHh---c--C-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 2 DEANGLAELMIQ---R--G-VNP-DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 2 ~~a~~~~~~m~~---~--~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
++|..++++... . | -.| ...+++.+=..|...|++++|+.++++..+
T Consensus 346 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 346 EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456666655532 1 1 233 467788888899999999999999988763
No 218
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=77.57 E-value=12 Score=24.16 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
+.|..+|+...+. ++-+...|...++-....|+.+.|..+|+.....
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3455566555443 2224455556666555666666666666666554
No 219
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=77.48 E-value=2.8 Score=19.69 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=25.4
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042276 14 RGVNPDTSTCNALMDGFCLADRFDRARELLVSM 46 (71)
Q Consensus 14 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 46 (71)
-++.|++.||+-+.+.+-+.--..+++.+.++.
T Consensus 30 PnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 30 PNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 356889999999998877776666777766655
No 220
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=76.49 E-value=5.6 Score=19.91 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=38.1
Q ss_pred HHHHHHHHHh--cCCC-----------cCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCC
Q 042276 4 ANGLAELMIQ--RGVN-----------PDTSTCNALMDGFCLAD---RFDRARELLVSMGSKGC 51 (71)
Q Consensus 4 a~~~~~~m~~--~~~~-----------p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~ 51 (71)
...++.+|.. .|+. |+.++-+.+++++.+.+ ...+|..+-+.|.+.|+
T Consensus 8 l~~L~~~m~~~~~Gv~i~~rr~~~k~y~~cF~GsdlVdWL~~~~~~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 8 LHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENF 71 (120)
T ss_dssp HHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCccCCCeeeeeEEccEEccceeehHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 4567888853 4554 67888999999999865 66899999999998874
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=76.38 E-value=5.9 Score=20.11 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCc-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 3 EANGLAELMIQRGVNP-DTS-TCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
++..++.+....+ .| ... .--.+--++.+.|+++.|.+.++.+.+.
T Consensus 56 ~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 56 KGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4666777766543 23 111 2222233677888888888888888765
No 222
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=75.98 E-value=3.7 Score=19.28 Aligned_cols=29 Identities=7% Similarity=-0.040 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhh-CCCCccHHHHHHHHHHH
Q 042276 36 FDRARELLVSMGS-KGCKQDAFSHSILINGG 65 (71)
Q Consensus 36 ~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~ 65 (71)
.++|...|.+|.. .++.|+ .||.-.+...
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i 45 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKI 45 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHH
Confidence 3445555555542 333333 4444444433
No 223
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=75.69 E-value=6.9 Score=20.55 Aligned_cols=62 Identities=15% Similarity=-0.049 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHhc-----CCCc-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCccHHHHHHHHH
Q 042276 2 DEANGLAELMIQR-----GVNP-DTSTC----NALMDGFCLADRFDRARELLVSMGS-----KGCKQDAFSHSILIN 63 (71)
Q Consensus 2 ~~a~~~~~~m~~~-----~~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~ 63 (71)
++|...++.-.+. .+.| +...| .-.=.++...|++++|+..|++..+ .|+.+......-.+.
T Consensus 74 ~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 74 DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3455555554432 3366 46677 7777788899999999999999864 456665555444443
No 224
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=74.79 E-value=7.3 Score=20.44 Aligned_cols=64 Identities=11% Similarity=-0.056 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhcc
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLADR----------FDRARELLVSMGSKGCKQ-DAFSHSILINGGSARI 69 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~ 69 (71)
++|.+.++...+. .| +...|+.+=.++.+.++ +++|+..|++..+. .| +..+|..+=.+|.+.|
T Consensus 19 eeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 19 EQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhc
Confidence 5677777777654 44 67777766667776665 45899999998775 34 4567777777776543
No 225
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=74.33 E-value=5.8 Score=19.08 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNP---DTSTCNALMDGFCLADRFDRARELLVSM 46 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m 46 (71)
++.+.++.+.....-.| |+..+...+.-+.+.++++.+..+++-+
T Consensus 12 ~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l 59 (97)
T 4fjo_A 12 SDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYM 59 (97)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 45667777777656667 6777777777788889999988876554
No 226
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.21 E-value=11 Score=21.69 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhcCCCc-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 2 DEANGLAELMIQRGVNP-D---------------TSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
++|.+.|....+..-.. + ..+...+...|.+.|++++|.+.+.....
T Consensus 21 ~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 21 NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57888888876532211 1 12467788999999999999999988764
No 227
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=73.00 E-value=11 Score=21.83 Aligned_cols=48 Identities=8% Similarity=-0.153 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 042276 6 GLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ 53 (71)
Q Consensus 6 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 53 (71)
+++..+.+.|+.|...++.=++..+++.=.++.+.++++.+...|-..
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~ 277 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF 277 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh
Confidence 466777788999988888889988888888999999999998877543
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=72.85 E-value=12 Score=22.13 Aligned_cols=46 Identities=13% Similarity=-0.071 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 24 NALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 24 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
..++..+...|+.+++...++.+... -..+...|..+|.++.++|+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr 220 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDR 220 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Confidence 34556677899999999988888654 13378899999999999886
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.84 E-value=8.2 Score=20.13 Aligned_cols=51 Identities=6% Similarity=0.023 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccH
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDA 55 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 55 (71)
++..+++++...+-.-..-.---+--++.+.|++++|.+..+.+.+. +|+.
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 56667777765321111222222334677888999999888888765 5643
No 230
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=72.81 E-value=6.9 Score=21.82 Aligned_cols=50 Identities=6% Similarity=-0.203 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhccc
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGSK----GCKQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~ 70 (71)
..+++.+-..|.+ |++++|+..|++.... |-.+ ...++..+-..+.+.|+
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK 170 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC
Confidence 4566667677777 8888888888877542 1111 13456666666666554
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.74 E-value=8 Score=19.93 Aligned_cols=50 Identities=6% Similarity=0.026 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQD 54 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 54 (71)
++..++.++...+-.-..-..=-+--++.+.|+++.|.+..+.+.+. +|+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 46666777665431112333333444677788888888887777655 454
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=72.05 E-value=8.7 Score=20.08 Aligned_cols=66 Identities=14% Similarity=-0.038 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCc--cHHHHHHHHHHHHhccc
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLAD---RFDRARELLVSMGSKGCKQ--DAFSHSILINGGSARIR 70 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~ 70 (71)
.+.+-|.+-.+.+- ++..+.--+--++++.. +.++++.+|++..+.. .| +...+--+--++.+.|+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence 34555555555544 45444444445777777 6669999999998764 24 23344444444456554
No 233
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=71.78 E-value=5.3 Score=17.49 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=20.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcc
Q 042276 31 CLADRFDRARELLVSMGSKGCKQD 54 (71)
Q Consensus 31 ~~~g~~~~a~~~~~~m~~~g~~p~ 54 (71)
...|+++.|++.+-+|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 356899999999999988777775
No 234
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=71.50 E-value=5.3 Score=17.48 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHHhhCC-CCccH
Q 042276 33 ADRFDRARELLVSMGSKG-CKQDA 55 (71)
Q Consensus 33 ~g~~~~a~~~~~~m~~~g-~~p~~ 55 (71)
.-+++.|...|.++...| +.|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 459999999999998765 44443
No 235
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=70.47 E-value=12 Score=21.42 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 042276 6 GLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGC 51 (71)
Q Consensus 6 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 51 (71)
+++..+.+.|+.|...++.=++..+++.=.++.+.++++.....|.
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 4566777788888888888888888877778888888888877663
No 236
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=69.90 E-value=10 Score=21.89 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 042276 6 GLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGC 51 (71)
Q Consensus 6 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 51 (71)
+++..+.+.|+.|...++.=++..|++.=.++.+.++++.....|.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~ 254 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT 254 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc
Confidence 4566677778888777777777777777677778888877776653
No 237
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=68.84 E-value=8.6 Score=18.72 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=38.3
Q ss_pred HHHHHHHHH--hcCC-----------CcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhCCC
Q 042276 4 ANGLAELMI--QRGV-----------NPDTSTCNALMDGFCLAD----RFDRARELLVSMGSKGC 51 (71)
Q Consensus 4 a~~~~~~m~--~~~~-----------~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~ 51 (71)
-..++..|. ..|+ -|+.++-+.+++++.+.. +.++|..+-+.|.+.|+
T Consensus 21 l~~iv~~M~~p~~Gv~i~dr~~~~~~~~~~F~G~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~G~ 85 (105)
T 1fsh_A 21 MSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEGFKERREARKYASSMLKHGF 85 (105)
T ss_dssp HHHHHHHHHSTTSSSCSSCEEETTEEESSCCHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCceeEEeEeCCEECCceeEcHHHHHHHHHhCcCCCCHHHHHHHHHHHHHCCc
Confidence 356778885 3555 378899999999999864 57899999999999885
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=68.75 E-value=15 Score=21.51 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhcCCCc--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCC--ccHHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNP--DTSTCNALMDGFCLA-DRFDRARELLVSMGSKGCK--QDAFSHSILI 62 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~--p~~~~~~~li 62 (71)
++|.+.|++-.+. .| +..++...-+.+++. ++.+++.+.+++-...... |+....|.+-
T Consensus 221 ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 221 EKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 5678888888765 45 367777777778885 9999999999999988766 7766666543
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=68.20 E-value=12 Score=19.98 Aligned_cols=61 Identities=10% Similarity=0.013 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILING 64 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 64 (71)
++|.++|+.+.+.+-.. ...|-..-.-=.+.|++..|.+++..-...+..|. ......|.-
T Consensus 77 d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~n 137 (161)
T 4h7y_A 77 DDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRN 137 (161)
T ss_dssp GGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHh
Confidence 56777888876532222 44444444444468999999999999988776665 444444443
No 240
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=68.10 E-value=8.9 Score=22.28 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 042276 6 GLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKG 50 (71)
Q Consensus 6 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 50 (71)
+++..+.+.|+.|...++.=++..|++.=.++.+.++++.....|
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 456677778888888888888888887777888888888887665
No 241
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=67.61 E-value=7.6 Score=22.25 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=29.6
Q ss_pred hHHHHHHHHH-HhcCCCc---CHHHHHHHHHHHHhcC-----CHHHHHHHHH
Q 042276 2 DEANGLAELM-IQRGVNP---DTSTCNALMDGFCLAD-----RFDRARELLV 44 (71)
Q Consensus 2 ~~a~~~~~~m-~~~~~~p---~~~~~~~li~~~~~~g-----~~~~a~~~~~ 44 (71)
+++...|..+ .+.|++| |+.+| ++....+.| -+.+..++|+
T Consensus 197 ~~~~~~W~~Var~sgIPplHLDSilW--lig~~~~~~~~~~~~~~~~~~~~~ 246 (256)
T 1xqo_A 197 EAVQKIWDAVARETGIPPLHLDTLLW--LAGRAVLYGENLHGVPKEVIALFQ 246 (256)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHH--HHHHHHTTCCCCSSSCHHHHHHTT
T ss_pred HHHHHHHHHHHHccCCCchhhhHHHH--HhccccccccccccCcHHHHHHHH
Confidence 3667888888 4688888 89999 777777655 3556666663
No 242
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=67.19 E-value=21 Score=23.00 Aligned_cols=62 Identities=11% Similarity=-0.040 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNP--DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
+.|..+|+......-.+ ....|...++--.+.|+.+.+.++.++|.+. .|+......+++-|
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 46778888776553322 5678999999889999999999999999877 46655555555544
No 243
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=67.16 E-value=10 Score=19.01 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 042276 25 ALMDGFCLADRFDRARELLVSM 46 (71)
Q Consensus 25 ~li~~~~~~g~~~~a~~~~~~m 46 (71)
.+|.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3344444444444444444444
No 244
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=66.60 E-value=10 Score=18.64 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCL----ADRFDRARELLVSMGSKG 50 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 50 (71)
+|.+.|+.-.+.| +...+..+=..|.+ ..++++|++.|++..+.|
T Consensus 43 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 91 (138)
T 1klx_A 43 KLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN 91 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC
Confidence 3555555555443 44555555555555 666777777776666654
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.39 E-value=16 Score=21.06 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCccHHHHHHHHHH
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSK--GCKQDAFSHSILING 64 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~ 64 (71)
++.+...+-++. -+-|...-..++.-+|=.|+++.|.+-++...+. ...|-...|-.+|.+
T Consensus 15 ~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 15 QALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 344434333333 1448888899999999999999999988887654 233444455555543
No 246
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F, structural genomics, unknown function; NMR {Haemophilus influenzae} SCOP: d.17.7.1
Probab=66.03 E-value=2.8 Score=20.81 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHH
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNA 25 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~ 25 (71)
+.|..+|-+|-..++.| |+..||.
T Consensus 18 d~AYDiFLE~A~dNL~paDillFnl 42 (110)
T 1nnv_A 18 DIAYDIFLEMAGENLDPADILLFNL 42 (110)
T ss_dssp HHHHHHHHHHCSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 45667777776666666 5555553
No 247
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.01 E-value=16 Score=20.92 Aligned_cols=51 Identities=10% Similarity=-0.087 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CC--Cc-cHHHHHHHHHHHHhccc
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGSK--GC--KQ-DAFSHSILINGGSARIR 70 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p-~~~~~~~li~~~~~~~~ 70 (71)
..++..+-..+...|++++|..++++.... +. .| ....|..+...|...|+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN 190 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc
Confidence 557777888888999999999988887542 11 12 23466677777766554
No 248
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=65.49 E-value=6.2 Score=25.16 Aligned_cols=51 Identities=10% Similarity=-0.072 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcccC
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIRK 71 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 71 (71)
+.-----++..|.+.|..+.|.++++.|..+-.. +...| ..+..|+|+|++
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~ 565 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKY 565 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCCh
Confidence 4555667888999999999999999999866332 22344 666777777753
No 249
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=64.19 E-value=15 Score=20.57 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=39.7
Q ss_pred HHHHhcCCCcCHHH---------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 9 ELMIQRGVNPDTST---------CNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 9 ~~m~~~~~~p~~~~---------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+.+..+|+.|.... ...+.. ....++.+.+.+++++....|..|.......++.+.-+.|
T Consensus 17 ~~~~~~G~~i~~~~~~l~p~~~~~~~l~~-al~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG 85 (258)
T 2i2x_B 17 NVALEKALTPEEAAEELYPKDELIYPIAK-AIFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVI 85 (258)
T ss_dssp HHHHSCSSCHHHHHHHHSCCCTTSHHHHH-HHHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHhCCcHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44455777665443 233333 3446888999999999998888887666667776665433
No 250
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=64.01 E-value=8.4 Score=22.01 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 21 STCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
.--|.+++-|...|+++.|.++++.+..
T Consensus 35 ~~~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 35 KQGNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 3457889999999999999999997653
No 251
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=63.64 E-value=13 Score=19.24 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 042276 24 NALMDGFCLADRFDRARELLVSM 46 (71)
Q Consensus 24 ~~li~~~~~~g~~~~a~~~~~~m 46 (71)
+.+|.-|...++.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34444444445555555544444
No 252
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=61.82 E-value=11 Score=17.51 Aligned_cols=52 Identities=6% Similarity=-0.088 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCccHHHHHHHHHHHHhccc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSK------GCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~~ 70 (71)
+..-+-.+=..+.+.+++..|...|+...+. +-.+....+..+-.++.+.|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~ 61 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD 61 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC
Confidence 3344455666778899999999999887653 123456777788788777765
No 253
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=61.78 E-value=9.1 Score=18.65 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 042276 21 STCNALMDGFCLADRFDRARELL 43 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~ 43 (71)
.|...|+.++-+.+.-+-|..+.
T Consensus 75 AT~~~L~~AL~~~~~~dvae~l~ 97 (110)
T 1wxp_A 75 ATPENLINALNKSGLSDLAESLT 97 (110)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHH
Confidence 34555555555555555554443
No 254
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=60.37 E-value=7.1 Score=19.34 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=37.2
Q ss_pred HHHHHHHH--hcCCC-----------cCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCC
Q 042276 5 NGLAELMI--QRGVN-----------PDTSTCNALMDGFCLAD---RFDRARELLVSMGSKGC 51 (71)
Q Consensus 5 ~~~~~~m~--~~~~~-----------p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~ 51 (71)
.+++.+|. +.|+. |+.++-+.+++++.+.+ ..++|..+-+.+.+.|+
T Consensus 9 ~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~GselVdWLi~~~~~~~R~EAv~lgq~Ll~~G~ 71 (109)
T 1uhw_A 9 GALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKLVRNRQEGLMISASLLSEGY 71 (109)
T ss_dssp HHHHHHHHCTTTSCCCEEEESSSCEEEEECCHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCCceeeeeEECCEEccccccchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCe
Confidence 46777776 36663 57788899999999876 66899999999998884
No 255
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=60.31 E-value=12 Score=17.61 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 042276 22 TCNALMDGFCLADRFDRAREL 42 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~ 42 (71)
|...|+.++.+.|.-+-|..+
T Consensus 73 t~~~L~~AL~~~~~~~iae~i 93 (99)
T 1fad_A 73 SVAGLVKALRTCRLNLVADLV 93 (99)
T ss_dssp SHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHCCcHHHHHHH
Confidence 444444444444444444443
No 256
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=60.21 E-value=12 Score=17.42 Aligned_cols=57 Identities=18% Similarity=0.018 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 5 NGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 5 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
..+++.+.+.|+-. ..-+..+- +.....+.|.++++.+..+| ..+|..+++++.+.+
T Consensus 25 ~~lld~L~~~~vlt-~~~~e~I~---~~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 25 SYIMDHMISDGFLT-ISEEEKVR---NEPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEG 81 (94)
T ss_dssp HHHHHHHHHHTSSC-HHHHHHHH---TSSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCC-HHHHHHHH---cCCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcC
Confidence 45677777665442 22222222 23677788999998888775 677777777776554
No 257
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=60.07 E-value=18 Score=19.26 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=25.0
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 042276 16 VNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGC 51 (71)
Q Consensus 16 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 51 (71)
..|+...--.+-.+|.+.|+..+|.+++.+.-++|+
T Consensus 121 ~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 121 NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 345555566666777777777777777777777765
No 258
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=58.18 E-value=9.9 Score=18.50 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 042276 2 DEANGLAELMIQRGVNP---DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQ 53 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 53 (71)
++|..+...|.-+.-.| |..|-..+++.+-..|-+..+.++..+-.+.|-.|
T Consensus 14 dKALDFI~~M~tSas~P~sMdESTAKGifKyL~elGvPas~~dv~aRg~qegWn~ 68 (115)
T 2es9_A 14 EKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNP 68 (115)
T ss_dssp HHHHHHHHTSCTTCSSCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCH
T ss_pred HHHHHHhcccccCCCCCCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCCh
Confidence 45666666665443344 56666777777777777777777777666665444
No 259
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=58.09 E-value=16 Score=18.28 Aligned_cols=43 Identities=7% Similarity=-0.054 Sum_probs=30.0
Q ss_pred HHHHHHHHHHh-cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 3 EANGLAELMIQ-RGVNPDTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 3 ~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
.+.+++....+ .| ...|...|+.++-+.+.-+-|..+=..+..
T Consensus 48 q~~~mL~~W~~r~G---~~ATv~~L~~AL~~i~~~diAe~Ie~~l~~ 91 (122)
T 3ezq_B 48 RVRESLRIWKNTEK---ENATVAHLVGALRSCQMNLVADLVQEVQQA 91 (122)
T ss_dssp HHHHHHHHHHHHCT---TTCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC---CCchHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666654 33 335788899999999988888777666554
No 260
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=57.94 E-value=8.5 Score=16.47 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHhhCCCCccH
Q 042276 34 DRFDRARELLVSMGSKGCKQDA 55 (71)
Q Consensus 34 g~~~~a~~~~~~m~~~g~~p~~ 55 (71)
.+...|.++++.+.+.|-.|..
T Consensus 7 RDv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcH
Confidence 3567889999999888866654
No 261
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=57.74 E-value=19 Score=19.02 Aligned_cols=46 Identities=11% Similarity=-0.036 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCc--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHhh
Q 042276 3 EANGLAELMIQRGVNP--DTSTCNALMD-G-----FCLADRFDRARELLVSMGS 48 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 48 (71)
+|.++|++.-...-.+ ....|-.||. . ..+.|+...|..++.+...
T Consensus 50 eaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 50 ESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5677888886655555 6677888888 2 3358999999999998865
No 262
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=56.75 E-value=31 Score=22.80 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=24.9
Q ss_pred Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 17 NP-DTSTCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 17 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
.| +-.+|-.|..+|.+.|+++.|+-.+..|.
T Consensus 367 aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 367 ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 55 57788888888888888888888888774
No 263
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=56.51 E-value=23 Score=19.54 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=27.1
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 042276 26 LMDGFC---LADRFDRARELLVSMGSKGCKQDAFSHSILING 64 (71)
Q Consensus 26 li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 64 (71)
+|+++- +-++++.|+-.+.+|.+.|..|.-..--.++-+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344444 457899999999999988877766555544443
No 264
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=56.19 E-value=24 Score=19.55 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=25.4
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 042276 26 LMDGFC---LADRFDRARELLVSMGSKGCKQDAFSHSILING 64 (71)
Q Consensus 26 li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 64 (71)
+|+++- +-++++.|+-.+.+|.+.| .|.-..--.++-+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~A 57 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIG 57 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 444544 4578889999999998888 6665544444433
No 265
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=55.89 E-value=17 Score=19.59 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 24 NALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 24 ~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
=.+|.++.+.|.+++|.++..++..
T Consensus 36 LqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 36 LQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578999999999999999888764
No 266
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=55.82 E-value=38 Score=22.40 Aligned_cols=40 Identities=8% Similarity=-0.151 Sum_probs=33.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHhcccC
Q 042276 30 FCLADRFDRARELLVSMGSKGCKQ-DAFSHSILINGGSARIRK 71 (71)
Q Consensus 30 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~ 71 (71)
+.+.|+++-|+.+-++.... -| +-.+|..|..+|.+.|+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~ 387 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEY 387 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCH
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccH
Confidence 44689999999999998765 46 468999999999998875
No 267
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=55.26 E-value=31 Score=20.53 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhC
Q 042276 20 TSTCNALMDGFCL----ADRFDRARELLVSMGSK 49 (71)
Q Consensus 20 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 49 (71)
...+..+-..|.+ .+++++|.+.|++..+.
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 3444444444444 44555555555554443
No 268
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=55.20 E-value=31 Score=20.53 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCL----ADRFDRARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
+|.+.|+...+.+ +...+..+=..|.+ .+++++|...|++..+.| +...+..|-..|
T Consensus 349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y 409 (490)
T 2xm6_A 349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 4555555555443 45555555556666 667777777777766654 344444444433
No 269
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=55.06 E-value=21 Score=18.65 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHhhC
Q 042276 35 RFDRARELLVSMGSK 49 (71)
Q Consensus 35 ~~~~a~~~~~~m~~~ 49 (71)
++++|++.|++..+.
T Consensus 68 ~~~~A~~~~~~A~~~ 82 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA 82 (212)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 455555555554443
No 270
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=53.33 E-value=30 Score=19.85 Aligned_cols=33 Identities=12% Similarity=-0.052 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc
Q 042276 22 TCNALMDGFCLADRFDRARELLVSMGSKGCKQD 54 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 54 (71)
.+..+=.++.+.|++++|+..|++-......|.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~ 205 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc
Confidence 444445557778888888888888764433254
No 271
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=53.27 E-value=3.1 Score=20.83 Aligned_cols=14 Identities=7% Similarity=0.180 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHhh
Q 042276 35 RFDRARELLVSMGS 48 (71)
Q Consensus 35 ~~~~a~~~~~~m~~ 48 (71)
.++.|.+.+..|++
T Consensus 42 ~y~ka~ecl~~~R~ 55 (120)
T 1q2z_A 42 YFMKSIDCIRAFRE 55 (120)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444443
No 272
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=53.13 E-value=28 Score=19.41 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 042276 19 DTSTCNALMDGFCL---ADRFDRARELLVSMGSKGCKQDAFSHSILING 64 (71)
Q Consensus 19 ~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 64 (71)
+.-..--+|+++-| -++++.|+-.+.+|.+.|..|.-..--.++-+
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~A 79 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISA 79 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33344455666664 57999999999999999988876655555444
No 273
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=51.26 E-value=19 Score=18.35 Aligned_cols=42 Identities=12% Similarity=-0.081 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 042276 22 TCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGS 66 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 66 (71)
.|.-.|...+.+++.+-|+++++-..+.| +...|.+.+-.|.
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCY 75 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCY 75 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHH
Confidence 34455666677778888888887777766 5555555555443
No 274
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=50.97 E-value=31 Score=19.38 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 2 DEANGLAELMIQRGVNPDT----STCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
++|...+++.....-..+. .+++.+-..+...|++++|...+++...
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4566666666543211122 2455555667788899998888887754
No 275
>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1
Probab=50.91 E-value=28 Score=18.77 Aligned_cols=43 Identities=12% Similarity=0.002 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHh
Q 042276 5 NGLAELMIQRGVNPDTSTCNALMDGFCLA-DRFDRARELLVSMG 47 (71)
Q Consensus 5 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~ 47 (71)
..+|..++++.++.|...-=.-|--+++. +++..|-+.|-+|.
T Consensus 66 ~PL~~~Lr~~~L~~dil~~L~~Iv~~~q~~r~y~~And~Yl~La 109 (173)
T 1dvk_A 66 FPLLLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLS 109 (173)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 56788888888888776666666667776 89999999988885
No 276
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=50.48 E-value=20 Score=17.37 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 042276 22 TCNALMDGFCLADRFDRA 39 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a 39 (71)
|...|+.++.+.|.-+-|
T Consensus 77 T~~~L~~aL~~i~r~dia 94 (111)
T 2yqf_A 77 NMENLYTALQSIDRGEIV 94 (111)
T ss_dssp CHHHHHHHHHHTTCCHHH
T ss_pred hHHHHHHHHHHcCcHHHH
Confidence 344444444444444333
No 277
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=49.71 E-value=27 Score=18.31 Aligned_cols=25 Identities=8% Similarity=0.231 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 23 CNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 23 ~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
...+|+-|...++.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456666666777777777776665
No 278
>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A {Chryseobacterium proteolyticum} PDB: 2ksv_A 2z8t_X
Probab=49.39 E-value=24 Score=19.10 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=17.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcc
Q 042276 31 CLADRFDRARELLVSMGSKGCKQD 54 (71)
Q Consensus 31 ~~~g~~~~a~~~~~~m~~~g~~p~ 54 (71)
...|....|..+-..+.+.|+.|+
T Consensus 38 pddGCyARAHlm~~~l~~~Gi~p~ 61 (185)
T 2zk9_X 38 PVDGCYARAHKMRQILMNNGYDCE 61 (185)
T ss_dssp TTSCHHHHHHHHHHHHHHTTBCCE
T ss_pred CcccHHHHHHHHHHHHHHcCCChh
Confidence 345566777777777888888875
No 279
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=48.60 E-value=9.1 Score=16.64 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCccHH
Q 042276 33 ADRFDRARELLVSMGSKGCKQDAF 56 (71)
Q Consensus 33 ~g~~~~a~~~~~~m~~~g~~p~~~ 56 (71)
.-+++.|...|.+. +..+.|+.+
T Consensus 32 ~Wd~~~A~~~F~~~-~~~IP~eAF 54 (57)
T 2jp7_A 32 NWNYEVAIKGFQSS-MNGIPREAF 54 (57)
T ss_dssp TTCSHHHHHHHHHS-TTTSCHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHh
Confidence 34889999999996 444666543
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.37 E-value=19 Score=21.67 Aligned_cols=26 Identities=19% Similarity=-0.001 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 23 CNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 23 ~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
...+-+-|.+.|+++.|.+.|.++..
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~ 159 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLS 159 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555666666665555553
No 281
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=47.18 E-value=21 Score=22.50 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 23 CNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 23 ~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
++.....|.+.|++++|++++.++.+
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 34455567778888888888877754
No 282
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=46.24 E-value=29 Score=19.32 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=18.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHh
Q 042276 27 MDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 27 i~~~~~~g~~~~a~~~~~~m~ 47 (71)
+-.|.+.|.+++|.++|++.-
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHccchHHHHHHHHHHh
Confidence 556889999999999999954
No 283
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=44.81 E-value=28 Score=20.81 Aligned_cols=45 Identities=7% Similarity=-0.163 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 042276 6 GLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKG 50 (71)
Q Consensus 6 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 50 (71)
+++..+.+.|+.|...++.=++..|++.=.++.+.++++.....|
T Consensus 217 ~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 217 DLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 567777888899988888888888888878899999998887765
No 284
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=43.86 E-value=15 Score=15.93 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 36 FDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 36 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
.++.-.+..+=++.|-.+...++++..+.+.+.|
T Consensus 12 ~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG 45 (55)
T 1dp3_A 12 VYKINKIVERRRAEGAKSTDVSFSSISTMLLELG 45 (55)
T ss_dssp HHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 3444445555555566665566666555555443
No 285
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=43.80 E-value=3.9 Score=21.45 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHHh
Q 042276 35 RFDRARELLVSMG 47 (71)
Q Consensus 35 ~~~~a~~~~~~m~ 47 (71)
.++.|.+.+..|+
T Consensus 73 ~y~KA~ecL~~lR 85 (152)
T 1rw2_A 73 YFMKSIDCIRAFR 85 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444444
No 286
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=42.83 E-value=39 Score=18.17 Aligned_cols=50 Identities=14% Similarity=-0.049 Sum_probs=38.9
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 042276 17 NPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSA 67 (71)
Q Consensus 17 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 67 (71)
.|....++-++..++...-.+.++-.+.+...+|. .+..+|---+..+++
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELAR 157 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999884 566666655555543
No 287
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=42.64 E-value=52 Score=19.57 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 23 CNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 23 ~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
-.++|.-|...|+.++|.+.++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3455666666666666666666654
No 288
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=42.43 E-value=7 Score=25.11 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhccc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
|...|.-+|....+.|.+++-.+.+.-.++..-+|... +.|+-+|+|.+|
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk~~r 131 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHTSCS
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHhhCc
Confidence 67788899999999999999999888777765555444 578888888775
No 289
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=42.02 E-value=31 Score=16.74 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 042276 23 CNALMDGFCLADRFDRARELLVSM 46 (71)
Q Consensus 23 ~~~li~~~~~~g~~~~a~~~~~~m 46 (71)
+.=--..+.+.|++++|++..+..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 333456788899999997765543
No 290
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=41.82 E-value=29 Score=16.99 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=15.7
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 042276 30 FCLADRFDRARELLVSMGS 48 (71)
Q Consensus 30 ~~~~g~~~~a~~~~~~m~~ 48 (71)
.++.|++++|.+.+++-.+
T Consensus 30 ~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5689999999999887654
No 291
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=41.42 E-value=30 Score=16.88 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=15.5
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 042276 30 FCLADRFDRARELLVSMGS 48 (71)
Q Consensus 30 ~~~~g~~~~a~~~~~~m~~ 48 (71)
.++.|++++|.+.+++-.+
T Consensus 28 ~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5689999999998877653
No 292
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=40.01 E-value=34 Score=16.69 Aligned_cols=27 Identities=7% Similarity=-0.079 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHH
Q 042276 36 FDRARELLVSMGSKGCKQDAFSHSILI 62 (71)
Q Consensus 36 ~~~a~~~~~~m~~~g~~p~~~~~~~li 62 (71)
+....++|+...+.|+-++...|-.++
T Consensus 53 ~~s~rd~~r~a~~~glI~~~~~w~~m~ 79 (119)
T 1wty_A 53 ARSPRAAIRGAFQVGLLPEDPFWLEML 79 (119)
T ss_dssp CSSHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 334444555555555554444444333
No 293
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=39.74 E-value=35 Score=16.76 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSM 46 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 46 (71)
.+.+++.....+.-. ...|...|+.++.+.|.-+-|.++-..+
T Consensus 55 q~~~mL~~W~~~~g~-~~Atv~~L~~aL~~~~r~diae~l~~~i 97 (118)
T 2of5_H 55 QIRHMLFSWAERQAG-QPGAVGLLVQALEQSDRQDVAEEVRAVL 97 (118)
T ss_dssp HHHHHHHHHHHTTSS-CSSHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCC-CCcHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 455666666554211 2578888999999999888887776644
No 294
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=39.18 E-value=24 Score=14.77 Aligned_cols=39 Identities=15% Similarity=0.056 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 4 ANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 4 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
-...+.+| -|+...+.+-=.--...|+.+.|.+++-.|.
T Consensus 7 ~v~~L~EM-----FP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 7 KLSILMDM-----FPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHH-----CSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHH-----CCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 34556666 3433322222222345789999999988874
No 295
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=38.64 E-value=43 Score=18.26 Aligned_cols=33 Identities=15% Similarity=-0.011 Sum_probs=16.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 33 ADRFDRARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 33 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
.++-+.+.+++++....|..|....-+.++.+.
T Consensus 15 ~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m 47 (215)
T 3ezx_A 15 NQNVAGTPELCKEALAAGVPALDIITKGLSVGM 47 (215)
T ss_dssp TTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344455555555555555555444444444443
No 296
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=37.86 E-value=56 Score=18.48 Aligned_cols=45 Identities=16% Similarity=-0.001 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCC
Q 042276 6 GLAELMIQRGVNPDTSTCNALMDGFCLAD-RFDRARELLVSMGSKGC 51 (71)
Q Consensus 6 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~ 51 (71)
++++.+.+.++ +...++.=++..|++.= .++.+.++++.+...|.
T Consensus 189 ~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~ 234 (292)
T 4hl4_A 189 ELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHP 234 (292)
T ss_dssp HHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCC
Confidence 46677777888 46788888888887765 59999999999988874
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.65 E-value=65 Score=19.25 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 21 STCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
...+.+|.-|...++.++|.+.++++..
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccC
Confidence 3457777788888888888888888753
No 298
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.19 E-value=57 Score=18.44 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhcC-CCcCH-H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 2 DEANGLAELMIQRG-VNPDT-S-----TCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 2 ~~a~~~~~~m~~~~-~~p~~-~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
+.|..+|+.+...- +..+. - .=-..+-.|.+.|.+++|.++|++....
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 57888888886432 21111 1 1113355688999999999999998765
No 299
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=36.87 E-value=39 Score=16.69 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.3
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 042276 30 FCLADRFDRARELLVSMGS 48 (71)
Q Consensus 30 ~~~~g~~~~a~~~~~~m~~ 48 (71)
.++.|++++|.+.+++-.+
T Consensus 32 ~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5578999999998877643
No 300
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.62 E-value=40 Score=16.49 Aligned_cols=59 Identities=10% Similarity=-0.002 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCC-HHH---HHHHHHHHhhCCCCccHHHHHHHH
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADR-FDR---ARELLVSMGSKGCKQDAFSHSILI 62 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~---a~~~~~~m~~~g~~p~~~~~~~li 62 (71)
.+.++.++...-|+.|+.-+..-++.-|...+. .++ -+-.|. ....|..|+..+.+.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFs-ts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFC-TSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-HHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCCCCCHHHHHHHH
Confidence 367788888889999988888888888887774 222 222342 24668899988877653
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.39 E-value=54 Score=19.08 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 22 TCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
..+.+|.-|...|+.++|.+.++++.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 34566777777788888887777775
No 302
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=35.57 E-value=34 Score=15.33 Aligned_cols=45 Identities=13% Similarity=-0.060 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 042276 22 TCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSA 67 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 67 (71)
.++-+++.+++..-.++++-.+.+..++| ..+..+|---+..+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 35667888888888899999999998887 4455666555554443
No 303
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=34.99 E-value=32 Score=17.46 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=36.7
Q ss_pred HHHHHHHHh--cCCC-----------cCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCC
Q 042276 5 NGLAELMIQ--RGVN-----------PDTSTCNALMDGFCLAD---RFDRARELLVSMGSKGC 51 (71)
Q Consensus 5 ~~~~~~m~~--~~~~-----------p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~ 51 (71)
.+++.+|.. .|+. |+.++-+.+++++.+.+ ..++|..+-+.+.+.|+
T Consensus 19 ~~Lv~~Mqd~~~GV~~~~r~~~~~~~~~cF~GsdlVdWLl~~~~~~sR~EAv~lg~~Ll~~G~ 81 (127)
T 2cso_A 19 GALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMIASSLLNEGY 81 (127)
T ss_dssp HHHHHHHHSSSSSCCCEEEEETTEEEEEEEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCCceeeeEEeccEEecceeechHHHHHHHHcCCCCCHHHHHHHHHHHHHCCe
Confidence 467777863 5663 57778899999999865 56899999999998884
No 304
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=34.74 E-value=74 Score=18.99 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhc----CCCcCHH------------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 042276 2 DEANGLAELMIQR----GVNPDTS------------TCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILING 64 (71)
Q Consensus 2 ~~a~~~~~~m~~~----~~~p~~~------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 64 (71)
++|.+.|+..... .++||.. .|+.+++.|.+....++-..++..| |+.+|.....-+++.
T Consensus 217 ~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aL---~~s~d~~ll~~~L~~ 292 (419)
T 3rjo_A 217 QRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFAL---CRTQNKEKLQWLLDE 292 (419)
T ss_dssp HHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTSHHHHHHHHHHHHHCCCHHHHHHHHHHH---TTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCCHHHHHHHHHHHhcCCCHHHHHHHHHHc---CCCCCHHHHHHHHHH
Confidence 4677788877643 2556522 2445555555554444444444433 444555554444443
No 305
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=34.56 E-value=43 Score=16.85 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=15.3
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 042276 30 FCLADRFDRARELLVSMGS 48 (71)
Q Consensus 30 ~~~~g~~~~a~~~~~~m~~ 48 (71)
.++.|++++|.+.+++-.+
T Consensus 47 ~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 47 AMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5578999999999887643
No 306
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=34.48 E-value=40 Score=15.90 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 042276 22 TCNALMDGFCLADRFDRARELLVSM 46 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~~~~m 46 (71)
.+..++.+--+.|++++++.-+.+.
T Consensus 78 ~~~~~i~~GE~sG~L~~~L~~la~~ 102 (116)
T 2whn_A 78 LYVNLVRAGETSGGLDLILDRLASF 102 (116)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4566677777777777766654444
No 307
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=34.47 E-value=62 Score=18.07 Aligned_cols=7 Identities=0% Similarity=-0.534 Sum_probs=3.1
Q ss_pred HHhcCCH
Q 042276 30 FCLADRF 36 (71)
Q Consensus 30 ~~~~g~~ 36 (71)
.++.|+.
T Consensus 280 A~~~g~~ 286 (337)
T 4g8k_A 280 AVELKLK 286 (337)
T ss_dssp HHHTTCH
T ss_pred HHHcCCH
Confidence 3444443
No 308
>3a54_A Protein-glutaminase; mutant structure like A substrate-enzyme complex, hydrolase; 1.50A {Chryseobacterium proteolyticum} PDB: 3a55_A 3a56_A*
Probab=34.21 E-value=71 Score=18.62 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=28.5
Q ss_pred CcCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHhhCCCCcc
Q 042276 17 NPDTSTCNALMDGFCLA-------------------DRFDRARELLVSMGSKGCKQD 54 (71)
Q Consensus 17 ~p~~~~~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~g~~p~ 54 (71)
-||+.|++.|...+... |....|..+-..+.+.|+.|+
T Consensus 119 IP~~~T~~~Lf~~i~n~rd~r~~asq~~I~F~YpdDGCyARAHLM~~~l~~~Gi~p~ 175 (305)
T 3a54_A 119 IPDVATLNSLFNQIKNQSCGTSTASSPCITFRYPVDGCYARAHKMRQILMNNGYDCE 175 (305)
T ss_dssp ESCHHHHHHHHHHHHTTBTTSTTCCSSCBCTTCTTSCHHHHHHHHHHHHHHTTBCCE
T ss_pred CCchhhHHHHHHHHhhhhcchhhccCCCccccCCcccHHHHHHHHHHHHHHcCCChh
Confidence 47899999998886643 455677777777778888775
No 309
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=34.20 E-value=42 Score=16.00 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 39 ARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 39 a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
|.+.|.++++.|..|+...+-+|..+.
T Consensus 36 a~~ay~rLk~~~~~~~~~~L~aL~gAi 62 (93)
T 3mab_A 36 SKEAFLRIWENDSSVCMSELYALEGAV 62 (93)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 777888888888888877776666554
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.93 E-value=38 Score=19.74 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 042276 24 NALMDGFCLADRFDRARELLVSM 46 (71)
Q Consensus 24 ~~li~~~~~~g~~~~a~~~~~~m 46 (71)
+.++.-|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34445555555555555555554
No 311
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.62 E-value=52 Score=16.93 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.2
Q ss_pred HHHHHHhhCCCC
Q 042276 41 ELLVSMGSKGCK 52 (71)
Q Consensus 41 ~~~~~m~~~g~~ 52 (71)
.+-.++..+|+.
T Consensus 84 ~I~~eL~~KGI~ 95 (159)
T 3c1d_A 84 RIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 344444444443
No 312
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=33.43 E-value=77 Score=18.84 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH------------------------HHHHhhCCCCccHHHHHHHHHHHH
Q 042276 21 STCNALMDGFCLADRFDRAREL------------------------LVSMGSKGCKQDAFSHSILINGGS 66 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~------------------------~~~m~~~g~~p~~~~~~~li~~~~ 66 (71)
.+|.++..=|.+.+++++|+++ .+...+.+.++|.....-|+..+.
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4555555555555555555553 233344566666666666655543
No 313
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=33.29 E-value=25 Score=16.39 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 20 TSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
.-.-+.|+..|....-++-+.++|+.|..
T Consensus 50 ~dla~lLv~~y~~~~A~~vt~~if~~mn~ 78 (89)
T 2hm2_Q 50 VDLTDKLVASYYEDYAAELVVAVLRDMRM 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHcCH
Confidence 34455667777777777888888888754
No 314
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=33.17 E-value=90 Score=19.53 Aligned_cols=61 Identities=7% Similarity=-0.174 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 2 DEANGLAELMIQRGVNP-DTSTCNALMDGFCLAD-RFDRARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
+++.+.++.+.+. .| |..+|+----...+.| .++++++.++++.+.. .-|..+|+-.-..+
T Consensus 126 ~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll 188 (567)
T 1dce_A 126 ARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (567)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHH
Confidence 3455555655543 22 5666666555555666 6666666666665442 12445555544443
No 315
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A
Probab=32.59 E-value=64 Score=17.62 Aligned_cols=36 Identities=14% Similarity=-0.004 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQD 54 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 54 (71)
+..++..++..+.+.+++..-..+|+.++++|..+.
T Consensus 85 ~~~~~~eL~~~~~~~~~f~~kY~VYkDLR~RGy~Vk 120 (190)
T 3ajv_A 85 ETRGWAAAVEVIAGLGLSLDTALVYFDLRRKGRKPL 120 (190)
T ss_dssp TBCHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCE
T ss_pred CCCCHHHHHHHHhhCCCcceEEEeHHHHHhCCCEEe
Confidence 345777888877777778888899999999986653
No 316
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.51 E-value=47 Score=16.06 Aligned_cols=35 Identities=11% Similarity=-0.047 Sum_probs=27.9
Q ss_pred cCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhCCCC
Q 042276 18 PDTSTCNALMDGFCLA----------DRFDRARELLVSMGSKGCK 52 (71)
Q Consensus 18 p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~ 52 (71)
++..+-+-+++.+... ...++|..+.+.+.+.|+-
T Consensus 38 ~~CF~GsE~VdWL~~~l~~~~~fg~~~sR~eAv~lgq~Ll~~gvi 82 (105)
T 2ysr_A 38 GNCFTAGEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKFLKNHVI 82 (105)
T ss_dssp SSCEEHHHHHHHHHHHHHHSSSSTTTCCHHHHHHHHHHHHHTTSS
T ss_pred CccccchHHHHHHHHhcccccccCccCCHHHHHHHHHHHHHCCCe
Confidence 4677778888888765 4788999999999988753
No 317
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=32.31 E-value=46 Score=15.85 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=19.9
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhh-CCCCccHHHHHHHHHHH
Q 042276 24 NALMDGFCLAD-RFDRARELLVSMGS-KGCKQDAFSHSILINGG 65 (71)
Q Consensus 24 ~~li~~~~~~g-~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~ 65 (71)
|.++.-+.+.| ++......|+.+.. ..+-.+-..+++++..|
T Consensus 8 n~IVqQlv~aGadLa~~rtmlrn~m~g~~valsr~eq~Il~qHF 51 (94)
T 3tjy_A 8 NRIVQQLVEAGADLANIRTMFRNMLRGEEMILSRAEQNVFLQHF 51 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHcCCchhhhHHHHHHHHHHC
Confidence 44444444444 44455555554432 23444555555555443
No 318
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=31.75 E-value=77 Score=18.27 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=36.2
Q ss_pred HHHHHHh-cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 7 LAELMIQ-RGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 7 ~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
+...+.+ ..++|+..+ .++....+.---+....+|..+.+..+..+..++..++..++.++
T Consensus 147 Li~rlik~e~l~p~~~~--lll~~iL~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a 208 (264)
T 2ilr_A 147 LLCCLVKMESLEPDAQV--LMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKG 208 (264)
T ss_dssp HHHHHHHCTTSCHHHHH--HHHHHHHHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHhccCCHHHHH--HHHHHHHhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 3344444 556665544 222222233333567778888888888888888888888877543
No 319
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=31.16 E-value=95 Score=20.21 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=25.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 042276 29 GFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSA 67 (71)
Q Consensus 29 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 67 (71)
+|...=.+++..+++++++...-.-|...|.++|..+..
T Consensus 458 mY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFd 496 (603)
T 4b8b_A 458 MYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIA 496 (603)
T ss_dssp HHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Confidence 344444667777777777766544567777777777643
No 320
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=31.07 E-value=20 Score=22.78 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCcCHH----HHHHHHHHHHhcC-CHHHHHHH
Q 042276 3 EANGLAELMIQRGVNPDTS----TCNALMDGFCLAD-RFDRAREL 42 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g-~~~~a~~~ 42 (71)
.+..+|.++.++|+.||.. +-+..+.+|+=.| .++++.++
T Consensus 238 Naadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l 282 (551)
T 1x87_A 238 NAAEVLPRLVETGFVPDVLTDQTSAHDPLNGYIPAGLTLDEAAEL 282 (551)
T ss_dssp CHHHHHHHHHHTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHH
Confidence 3567899999999988543 3444444666555 55555444
No 321
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=30.85 E-value=52 Score=16.00 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=12.9
Q ss_pred HHHHHHHHhhCCCCccHH
Q 042276 39 ARELLVSMGSKGCKQDAF 56 (71)
Q Consensus 39 a~~~~~~m~~~g~~p~~~ 56 (71)
..+-.++++..|++||..
T Consensus 22 ieekinELk~dG~ePDIi 39 (103)
T 2pk8_A 22 IEEKMNELKMDGFNPDII 39 (103)
T ss_dssp HHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHhcCCCCCeE
Confidence 344556777789999974
No 322
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=30.64 E-value=24 Score=16.17 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=11.7
Q ss_pred HHHHHHHHhhCCCCc
Q 042276 39 ARELLVSMGSKGCKQ 53 (71)
Q Consensus 39 a~~~~~~m~~~g~~p 53 (71)
+.+-|++|++.|+--
T Consensus 56 ~~k~ferMk~aG~fq 70 (73)
T 1v54_I 56 SMKDFEEMRKAGIFQ 70 (73)
T ss_dssp HHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHccccc
Confidence 677799999988643
No 323
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.33 E-value=62 Score=16.79 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 042276 6 GLAELMIQRGVNPDTS--TCNALMDGFCLADRFDRARELLVSMGSKGCKQ 53 (71)
Q Consensus 6 ~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 53 (71)
++.+.+.+.|..++.. .-.+.+...+..|+.+.+..+++-+.+.|..+
T Consensus 135 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 135 EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 4566667777766432 23356677788889888877778777776543
No 324
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.27 E-value=95 Score=18.90 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=29.1
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 26 LMDGFC---LADRFDRARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 26 li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
+|.++. +.++++.|+..+.+|.+.|..|.-..--.++.+.
T Consensus 258 ~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 258 LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444444 4579999999999999999888766655555443
No 325
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=30.20 E-value=71 Score=17.43 Aligned_cols=64 Identities=17% Similarity=0.078 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHh----cCCCc-CHHHHHHHHHHHHh-------cC------CHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 042276 2 DEANGLAELMIQ----RGVNP-DTSTCNALMDGFCL-------AD------RFDRARELLVSMGSKGCKQDAFSHSILIN 63 (71)
Q Consensus 2 ~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~-------~g------~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 63 (71)
++|.+.+..|.. ..-.| |....|.+.++.-. .| --+..+.+|+.+++....++....+.++.
T Consensus 14 ~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~~~~~ll~~ 93 (225)
T 2lp4_A 14 DEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLE 93 (225)
T ss_dssp HHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 455566655532 22233 56666666544321 12 22346778888887777888887777776
Q ss_pred HH
Q 042276 64 GG 65 (71)
Q Consensus 64 ~~ 65 (71)
+.
T Consensus 94 ~~ 95 (225)
T 2lp4_A 94 TK 95 (225)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 326
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=30.05 E-value=60 Score=16.55 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 38 RARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 38 ~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
..+++|..++.....++......++.++
T Consensus 72 ~lE~ll~~lr~g~~~~~~~l~dlll~~~ 99 (144)
T 3kyj_A 72 LCEDLIGLVRDAGVPMDGEIVEILLFAS 99 (144)
T ss_dssp HHHHHHHHHHHSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4666777777777777777777666654
No 327
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=29.97 E-value=42 Score=14.92 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=12.7
Q ss_pred cCCHHHHHHHHHHHh
Q 042276 33 ADRFDRARELLVSMG 47 (71)
Q Consensus 33 ~g~~~~a~~~~~~m~ 47 (71)
.|++++|+.++++-.
T Consensus 35 ~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 35 GGDLKQAEIWLHKEA 49 (64)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 589999999998764
No 328
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=29.70 E-value=50 Score=15.49 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=18.8
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhh-CCCCccHHHHHHHHHH
Q 042276 24 NALMDGFCLAD-RFDRARELLVSMGS-KGCKQDAFSHSILING 64 (71)
Q Consensus 24 ~~li~~~~~~g-~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~ 64 (71)
|.++.-+...| ++.....+++.+.. ..+-.+-..+++|+..
T Consensus 10 n~IVqQLv~AGADLA~vrtmlrnvm~g~~valsr~e~~il~qH 52 (85)
T 3hgl_A 10 NSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQH 52 (85)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCchHhhhHHHHHHHHHH
Confidence 44444444444 44455555554433 2333455555555443
No 329
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=29.49 E-value=20 Score=22.76 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCcCHH----HHHHHHHHHHhcC-CHHHHHHH
Q 042276 3 EANGLAELMIQRGVNPDTS----TCNALMDGFCLAD-RFDRAREL 42 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g-~~~~a~~~ 42 (71)
.+..+|.++.++|+.||.. +-+..+.+|+=.| .++++.++
T Consensus 239 Naadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l 283 (552)
T 2fkn_A 239 NAAEVHHTLLNRGVKIDIVTDQTSAHDPLIGYVPEGYSLDEADRL 283 (552)
T ss_dssp CHHHHHHHHHTTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHH
Confidence 3567899999999988543 3444444666555 55555544
No 330
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=28.89 E-value=54 Score=15.58 Aligned_cols=28 Identities=7% Similarity=-0.058 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 38 RARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 38 ~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
.|.++|.++...|..|....+-++-.+.
T Consensus 35 Ga~~ay~rL~~~~~~~c~~~L~aL~gAi 62 (93)
T 3bqs_A 35 GSKEAFLRIWENDSSVCMSELYALEGAV 62 (93)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4788899998888888887777664443
No 331
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.75 E-value=36 Score=21.00 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 042276 21 STCNALMDGFCLADRFDRARELLVSMGSKGCKQ 53 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 53 (71)
...|.+++.|.+.++++.+..+++.+...+..|
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p 209 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLA 209 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCc
Confidence 457788899999999999999999998877643
No 332
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.75 E-value=43 Score=15.48 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 042276 26 LMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 26 li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
+-.-|+..|+++.|..+|+...+
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHH
Confidence 34457788999999999887764
No 333
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=28.53 E-value=61 Score=16.09 Aligned_cols=45 Identities=9% Similarity=-0.030 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 4 ANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 4 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
..+++..+..+.- -...+++.|+.++-+.+.-..|.++-+.+...
T Consensus 57 ~yqmLr~W~~~~G-~~~Atv~~L~~aLr~~~l~~~ae~Ie~~l~~~ 101 (112)
T 1ich_A 57 QYSMLATWRRRTP-RREATLELLGRVLRDMDLLGCLEDIEEALCGP 101 (112)
T ss_dssp HHHHHHHHHHHSC-CSSCHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcC-CCCCcHHHHHHHHHHhccHHHHHHHHHHHhcc
Confidence 3445555543310 13358888888888888888888887777654
No 334
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=28.27 E-value=34 Score=13.13 Aligned_cols=22 Identities=5% Similarity=0.169 Sum_probs=17.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 042276 27 MDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 27 i~~~~~~g~~~~a~~~~~~m~~ 48 (71)
+.-|-..|..++|..+-.+|+.
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHcccHHHHHHHHHHHHh
Confidence 5567788999999999888864
No 335
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=28.20 E-value=19 Score=22.84 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCcCHH----HHHHHHHHHHhcC-CHHHHHHH
Q 042276 4 ANGLAELMIQRGVNPDTS----TCNALMDGFCLAD-RFDRAREL 42 (71)
Q Consensus 4 a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g-~~~~a~~~ 42 (71)
+..+|.++.++|+.||.. +-+..+.+|+=.| .++++.++
T Consensus 244 aadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l 287 (557)
T 1uwk_A 244 AAEILPELVKRGVRPDMVTDQTSAHDPLNGYLPAGWTWEQYRDR 287 (557)
T ss_dssp HHHHHHHHHHHTCCCSEECCCSCTTCTTTSCCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHH
Confidence 567899999999988543 3444444666555 45555444
No 336
>3qf2_A Nacht, LRR and PYD domains-containing protein 3; six helix bundle, apoptosis; 1.70A {Homo sapiens}
Probab=28.10 E-value=26 Score=17.16 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=9.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 042276 25 ALMDGFCLADRFDRARELLVSM 46 (71)
Q Consensus 25 ~li~~~~~~g~~~~a~~~~~~m 46 (71)
.|+..|....-++-+.++|+.|
T Consensus 55 lLv~~y~~~~A~~vt~~if~~m 76 (110)
T 3qf2_A 55 LMIDFNGEEKAWAMAVWIFAAI 76 (110)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCHHHHHHHHHHHHHHc
Confidence 3344444444444445555444
No 337
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.89 E-value=45 Score=14.38 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHh
Q 042276 7 LAELMIQRGVNPDTSTCNALMDGFCLADR--FDRARELLVSMG 47 (71)
Q Consensus 7 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~ 47 (71)
.++++.+-|+++.. ...+..+.|. ++.|++.+.+|.
T Consensus 12 mlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 12 MLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhc
Confidence 45555666666542 2334445554 788888888774
No 338
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=27.67 E-value=55 Score=15.33 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhC-CCCccHHHHHHHHHHHHh
Q 042276 37 DRARELLVSMGSK-GCKQDAFSHSILINGGSA 67 (71)
Q Consensus 37 ~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 67 (71)
+...++++.-.+. | ...+++.|++++-+
T Consensus 42 Eq~~qmL~~W~~~~g---~~a~~~~Li~~Lr~ 70 (86)
T 3oq9_A 42 EQKVQLLLCWYQSHG---KSDAYQDLIKGLKK 70 (86)
T ss_dssp THHHHHHHHHHHHSC---SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---cchHHHHHHHHHHH
Confidence 4455555554432 2 23356666665544
No 339
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=27.64 E-value=1e+02 Score=18.29 Aligned_cols=65 Identities=5% Similarity=-0.193 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADR-------FDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
++.+..+.+.+.. .-|...|+---..+.+.+. ++++++.+++..... .-|...|+-+-..+.+.|
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 6677777777653 2288899988888888776 688999888887642 236677776655555444
No 340
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=27.58 E-value=76 Score=16.91 Aligned_cols=43 Identities=7% Similarity=-0.069 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMG 47 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 47 (71)
.+.+++..+..+. ....|...++.++-+.|.-+-|..+-..+.
T Consensus 140 q~~~mL~~W~~r~--g~~At~~~L~~AL~~~~~~diae~l~~~~~ 182 (191)
T 2gf5_A 140 RVRESLRIWKNTE--KENATVAHLVGALRSCQMNLVADLVQEVQQ 182 (191)
T ss_dssp HHHHHHHHHHHHT--TTTCCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CCCcHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3445555554321 122356677777777777666666655544
No 341
>2km6_A Nacht, LRR and PYD domains-containing protein 7; NLRP7, pyrin domain, innate immune system, NALP, ATP-binding mutation, leucine-rich repeat; NMR {Homo sapiens}
Probab=27.57 E-value=21 Score=17.40 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 042276 21 STCNALMDGFCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 21 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 49 (71)
-.-+.|+..|....-++-+.++|+.|...
T Consensus 55 dLa~lLv~~y~e~~A~~vt~~if~~mn~~ 83 (106)
T 2km6_A 55 KLAEILVNTSSENWIRNATVNILEEMNLT 83 (106)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHcCHH
Confidence 34445555555555666666666666543
No 342
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=27.18 E-value=66 Score=16.04 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042276 19 DTSTCNALMDGFCLADRFDRARELLVSM 46 (71)
Q Consensus 19 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 46 (71)
...++++||.++-+++.-..|..+-+..
T Consensus 65 ~~aa~~~Li~aLr~~~l~~~Ad~Iq~~l 92 (115)
T 3ezq_A 65 KKEAYDTLIKDLKKANLCTLAEKIQTII 92 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHccchhHHHHHHHHH
Confidence 3446777777776666555555544443
No 343
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.94 E-value=1.2e+02 Score=19.85 Aligned_cols=41 Identities=17% Similarity=0.047 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCccHHHHHHHHHHHH
Q 042276 22 TCNALMDGFCLADRFDRARELLVSMGSK--GCKQDAFSHSILINGGS 66 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~ 66 (71)
+| ++|-.|.++|++++|.++.++.... .+. ..+...+..++
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d---~~F~~~l~~~~ 197 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVE---QSFLTYFKAYA 197 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC--------CHHHHHHHC-
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhh---HHHHHHHHHHH
Confidence 44 4566788999999999999877532 121 34555555554
No 344
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=26.80 E-value=63 Score=15.73 Aligned_cols=18 Identities=0% Similarity=-0.151 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhcCCHH
Q 042276 20 TSTCNALMDGFCLADRFD 37 (71)
Q Consensus 20 ~~~~~~li~~~~~~g~~~ 37 (71)
+.++...+....+.|-++
T Consensus 53 ~~s~rd~~r~a~~~glI~ 70 (119)
T 1wwp_A 53 GASPKGVIRLAREVGLLR 70 (119)
T ss_dssp CCSHHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 344444555555555443
No 345
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=26.46 E-value=56 Score=14.97 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 042276 24 NALMDGFCLADRFDRARELLVSMGSKGCK 52 (71)
Q Consensus 24 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 52 (71)
.++|+--.+.| +..|-++.+.|...|+.
T Consensus 27 ~S~lQR~lrIG-YnRAArlid~lE~~GiV 54 (73)
T 2ve8_A 27 ISAVQRKLKIG-YNRAARMIEAMEMAGVV 54 (73)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHccC-hHHHHHHHHHHHHCCcC
Confidence 45666666676 57888999999998864
No 346
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=26.41 E-value=61 Score=15.45 Aligned_cols=29 Identities=10% Similarity=-0.138 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 042276 38 RARELLVSMGSKGCKQDAFSHSILINGGS 66 (71)
Q Consensus 38 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 66 (71)
..+++++.++.....++......++.++-
T Consensus 67 ~~E~~l~~~r~~~~~~~~~l~~~l~~~~d 95 (113)
T 2lch_A 67 TIMNLVDKMLNSEIKITSDLIDKVKKKLD 95 (113)
T ss_dssp HHHHHHHHHTSTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 35667778877777888888888777653
No 347
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A*
Probab=26.30 E-value=32 Score=18.71 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhCCCCcc---HHHHHHHHHHHH
Q 042276 38 RARELLVSMGSKGCKQD---AFSHSILINGGS 66 (71)
Q Consensus 38 ~a~~~~~~m~~~g~~p~---~~~~~~li~~~~ 66 (71)
+..++..-+...|+.|+ ..+...+.+++.
T Consensus 121 ~~~n~~~~L~~~gI~Ps~g~~~t~~~I~~Ai~ 152 (217)
T 1vcz_A 121 KKSNLLENLKNAEITPRNGEHYTLESIKKAIE 152 (217)
T ss_dssp HHHCHHHHHHHTTCCCEEEEEEEHHHHHHHHH
T ss_pred HHcccHHHHHHCCCccCcCccccHHHHHHHHH
Confidence 34445566677899993 456677766664
No 348
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=26.13 E-value=99 Score=17.73 Aligned_cols=63 Identities=10% Similarity=0.040 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCC------HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFCLADR------FDRARELLVSMGSKGCKQDAFSHSILINGGSA 67 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 67 (71)
++.+.++.+.+... -|...|+---....+.+. ++++++.++.+.... .-|...|+-+-..+.+
T Consensus 164 ~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 164 KELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHh
Confidence 44455555544321 145555544444444443 555555555554431 1244555444444433
No 349
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=26.07 E-value=39 Score=13.12 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=13.4
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 042276 40 RELLVSMGSKGCKQDAFSHSILINGGSAR 68 (71)
Q Consensus 40 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 68 (71)
..+|++|-..| |..+--++++++.++
T Consensus 9 ~~~fk~iY~~g---ddd~kram~KS~~eS 34 (35)
T 2jtt_C 9 MNVLKKIYEDG---DDDMKRTINKAWVES 34 (35)
T ss_dssp HHHHHHHHTTC---CSSHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHhhc
Confidence 34555555544 445555555555443
No 350
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=25.99 E-value=1.1e+02 Score=18.10 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 042276 2 DEANGLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKG 50 (71)
Q Consensus 2 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 50 (71)
+++..+++.+.+-. .++...--.++....|--..+|-.-+.+-|++.+
T Consensus 22 eEa~~~~~~il~G~-~~d~QiaAfL~alr~kget~eEi~g~~~am~~~~ 69 (346)
T 4hkm_A 22 DEMVDLMRQIMRGE-VSDAMVSAILTGLRVKKETIGEIAGAATVMREFS 69 (346)
T ss_dssp HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 57888888887543 4566666666666777778888888888888755
No 351
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.65 E-value=56 Score=16.85 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 042276 6 GLAELMIQRGVNPDTS--TCNALMDGFCLADRFDRARELL 43 (71)
Q Consensus 6 ~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~ 43 (71)
++++.+.+.|..++.. .-.+.+...++.|+++-+.-++
T Consensus 23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 4455555665554322 1223455556666655444443
No 352
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*
Probab=25.52 E-value=1.6e+02 Score=20.02 Aligned_cols=31 Identities=3% Similarity=-0.020 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccH
Q 042276 25 ALMDGFCLADRFDRARELLVSMGSKGCKQDA 55 (71)
Q Consensus 25 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 55 (71)
-.+..+++.++-++|.++++.+...+..||.
T Consensus 727 w~~~~~ARL~dg~~A~~~l~~ll~~~~~~Nl 757 (899)
T 2eab_A 727 QRINSWARTGDGNTTYQLVELQLKNAMYANL 757 (899)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSBCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcCccc
Confidence 4566788999999999999999887777654
No 353
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.30 E-value=66 Score=15.41 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=19.1
Q ss_pred hHHHHHHHHHH--hcCCCcC-HHHHHHHHHHHHh
Q 042276 2 DEANGLAELMI--QRGVNPD-TSTCNALMDGFCL 32 (71)
Q Consensus 2 ~~a~~~~~~m~--~~~~~p~-~~~~~~li~~~~~ 32 (71)
++|.+++++|. .++++|+ -..|+.=|..|-+
T Consensus 48 ~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~ 81 (102)
T 1vcs_A 48 EEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQ 81 (102)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHH
Confidence 57778888873 3666554 4556666655543
No 354
>3fdq_A Motility gene repressor MOGR; protein-DNA complex, helix-turn-helix, minor groove binding, cytoplasm; 1.75A {Listeria monocytogenes}
Probab=24.65 E-value=84 Score=16.42 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 042276 4 ANGLAELMIQRGVNPDTSTCNALMDGFCLAD-RFDRARELLVSMG 47 (71)
Q Consensus 4 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 47 (71)
...++.++++.--.|...+-..+=..-.+.+ +++++.+++..|.
T Consensus 6 i~~~l~eikkq~d~~~~~s~~e~kkiek~~~v~yeel~dlY~~mv 50 (170)
T 3fdq_A 6 IRKLLQEIKKQVDNPGNSSTTEIKKMASEAGIDEQTAEEIYHLLT 50 (170)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3456677755433443333333333333333 6788888888875
No 355
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.51 E-value=83 Score=16.30 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=16.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 042276 26 LMDGFCLADRFDRARELLVSMGSKGCKQ 53 (71)
Q Consensus 26 li~~~~~~g~~~~a~~~~~~m~~~g~~p 53 (71)
.+...++.|+.+.+..+++.+.+.|..+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3455566777777766666555555443
No 356
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=23.92 E-value=18 Score=20.87 Aligned_cols=26 Identities=4% Similarity=-0.118 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHhhCCCCccHHHHH
Q 042276 34 DRFDRARELLVSMGSKGCKQDAFSHS 59 (71)
Q Consensus 34 g~~~~a~~~~~~m~~~g~~p~~~~~~ 59 (71)
+.++.+..+++.|.+.|+.|....|+
T Consensus 127 n~~~~~~~~~~~~~e~Gv~pE~e~fd 152 (282)
T 2y7e_A 127 NHPADIIRLAEAFKQYNVVPEVEVYE 152 (282)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEEC
Confidence 45677889999999999888665554
No 357
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=23.83 E-value=1.1e+02 Score=17.50 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh--CCCCc
Q 042276 24 NALMDGFCLADRFDRARELLVSMGS--KGCKQ 53 (71)
Q Consensus 24 ~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p 53 (71)
-.++++.. .++..+|+++++++.. .|..|
T Consensus 211 ~~l~~ai~-~~~~~~a~~~~~~l~~~~~g~~~ 241 (305)
T 2gno_A 211 RELLERFS-KVESKEFFALFDQVTNTITGKDA 241 (305)
T ss_dssp HHHHHHHH-HSCGGGHHHHHHHHHHHSCTHHH
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHhhcCCCH
Confidence 34555554 4688999999999987 77666
No 358
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=23.83 E-value=59 Score=14.39 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHhhCCCC
Q 042276 20 TSTCNALMDGFCLA---DRFDRARELLVSMGSKGCK 52 (71)
Q Consensus 20 ~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~ 52 (71)
..||.-+.+.+-.. -+.+...+++..+...|+.
T Consensus 23 ~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~ 58 (72)
T 2k6x_A 23 YITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGIN 58 (72)
T ss_dssp SCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCC
T ss_pred CccHHHHHHhCccccccCCHHHHHHHHHHHHHCCCc
Confidence 46888887776653 3677888888888888764
No 359
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.71 E-value=72 Score=15.30 Aligned_cols=10 Identities=40% Similarity=0.298 Sum_probs=5.8
Q ss_pred hHHHHHHHHH
Q 042276 2 DEANGLAELM 11 (71)
Q Consensus 2 ~~a~~~~~~m 11 (71)
++|.+++++|
T Consensus 59 dEA~eLl~qM 68 (102)
T 2qyw_A 59 QEANETLAEM 68 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555666665
No 360
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=23.39 E-value=73 Score=15.24 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 6 GLAELMIQRGVNPDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 6 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
.+++.+.++|+--... +. +. -...-..+.|.++++....+| ..+...+++.+.+.+
T Consensus 31 ~lLD~LL~~~VL~~ee-~~-I~--~~~~T~~~kaR~Lld~v~~KG----~~A~~~F~~~L~e~~ 86 (98)
T 2nz7_A 31 CLVDNLLKNDYFSAED-AE-IV--CACPTQPDKVRKILDLVQSKG----EEVSEFFLYLLQQLA 86 (98)
T ss_dssp HHHHHHHHTTSSCHHH-HH-HH--HTCCSHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHH-HH-HH--ccCCCcHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhC
Confidence 4556666555432222 22 11 112445677888888888775 566666666666544
No 361
>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=23.09 E-value=83 Score=15.81 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 042276 18 PDTSTCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILING 64 (71)
Q Consensus 18 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 64 (71)
.+..+|+.+|.++.+.+- +-=.+++.+|--. |+.+|..|++.
T Consensus 71 ~~g~sYs~fi~~L~k~~I-~LNRKvLa~lAi~----dp~~F~~lv~~ 112 (118)
T 2ftc_L 71 EHGLKYPALIGNLVKCQV-ELNRKVLADLAIY----EPKTFKSLAAL 112 (118)
T ss_pred HcCCCHHHHHHHHHHhCC-CccHHHHHHHHHc----CHHHHHHHHHH
Confidence 345679999988887762 3335666777644 67778777754
No 362
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.04 E-value=1.1e+02 Score=17.18 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=23.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 042276 28 DGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGG 65 (71)
Q Consensus 28 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 65 (71)
+..-+.++++++.+.++.+.+.+.+.+..--|.|-.+|
T Consensus 13 klaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 13 KLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 33455677777777777766665566665555554444
No 363
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=22.63 E-value=19 Score=20.69 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHhhCCCCccHHHHHH
Q 042276 35 RFDRARELLVSMGSKGCKQDAFSHSI 60 (71)
Q Consensus 35 ~~~~a~~~~~~m~~~g~~p~~~~~~~ 60 (71)
.++.+.++++.|.+.|+.|....|+.
T Consensus 123 ~~~~~~~~~~~~~e~Gi~pE~e~fd~ 148 (275)
T 3no5_A 123 PPELVDWLAAEMKTYGIKPEVEAFDL 148 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESST
T ss_pred CHHHHHHHHHHHHHcCCeeEEEEEcH
Confidence 56888999999999998887665543
No 364
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.51 E-value=42 Score=17.85 Aligned_cols=30 Identities=7% Similarity=-0.150 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcc
Q 042276 25 ALMDGFCLADRFDRARELLVSMGSKGCKQD 54 (71)
Q Consensus 25 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 54 (71)
+.+...++.|+.+....+++.+.+.|..++
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 456667788898888778877777665544
No 365
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=22.41 E-value=75 Score=15.01 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhC-CCCcc
Q 042276 4 ANGLAELMIQRGVNPDTSTCNALMDGFCL---ADRFDRARELLVSMGSK-GCKQD 54 (71)
Q Consensus 4 a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~-g~~p~ 54 (71)
.+++........+.+|+. .++.++++ ..-.++|+++-++..+. .+.|.
T Consensus 22 vKrl~~~~~~~~v~~~v~---i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~ 73 (89)
T 1bh9_B 22 IKRLIQSITGTSVSQNVV---IAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPK 73 (89)
T ss_dssp HHHHHHHHHSSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHH
T ss_pred HHHHHHHHcCCCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcH
Confidence 345555555444343333 33555555 34566788777776544 34454
No 366
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=22.39 E-value=1.2e+02 Score=17.93 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCc------CHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhC
Q 042276 6 GLAELMIQRGVNP------DTSTCNALMDGFCL-ADRFDRARELLVSMGSK 49 (71)
Q Consensus 6 ~~~~~m~~~~~~p------~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~ 49 (71)
.++.++.+.++.. ....-|.+|.+... .|++.+|.+.+.++..-
T Consensus 71 ~~~~~L~~yRf~~~d~~lagHs~GNl~Laal~~~~G~~~~ai~~~~~~l~v 121 (326)
T 2q7x_A 71 XFYEXVFQYRFSEDAGAFAGHPLGNLIIAGLSEMQGSTYNAMQLLSXFFHT 121 (326)
T ss_dssp HHHHHHTTCBCCC----CCSCBTTHHHHHHHHHHHSSHHHHHHHHHHHHTC
T ss_pred hHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCHHHHHHHHHHHhCC
Confidence 3566666655532 35566888888887 89999999999999753
No 367
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=22.15 E-value=18 Score=20.87 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 5 NGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 5 ~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
.++++...+.|++. -.+.|+++|+--.-.-+++++.++|..+++
T Consensus 225 ~~I~~i~l~aGv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 225 ETIVRIALEANVEQVIPHVYSSIIDKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp HHHHHHHHHTTCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 34555556666554 466777777655555578888888887764
No 368
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.11 E-value=93 Score=16.02 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccH
Q 042276 25 ALMDGFCLADRFDRARELLVSMGSKGCKQDA 55 (71)
Q Consensus 25 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 55 (71)
+.+...+..|..+.-.++.+-+.+.|..+|.
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 4555556666665555566666666655543
No 369
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=21.96 E-value=16 Score=20.82 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 5 NGLAELMIQRGVNP-DTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 5 ~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
.++++...+.|++. -.+.|+++|+--.-.-++++..++|..+++
T Consensus 202 ~~I~~i~l~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 202 SEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp HHHHHHHHHHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 34455555555544 456677777655555578888888877754
No 370
>1xg7_A Hypothetical protein; southeast collaboratory for structural genomics, secsg, hyperthermophIle, pyrococcus FU protein structure initiative; 1.88A {Pyrococcus furiosus} SCOP: a.96.1.6
Probab=21.69 E-value=42 Score=19.21 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=17.4
Q ss_pred hHHHHHHHHH-HhcCCCc---CHHHHHHH
Q 042276 2 DEANGLAELM-IQRGVNP---DTSTCNAL 26 (71)
Q Consensus 2 ~~a~~~~~~m-~~~~~~p---~~~~~~~l 26 (71)
+++...|..+ ++.|++| |+.+|-.+
T Consensus 197 ~~~~~~W~~Va~~sgIPpLHLDSilW~~l 225 (250)
T 1xg7_A 197 EKPTKFWMKIGQESGVPPLHIDSLIWPLL 225 (250)
T ss_dssp SCHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcceehhHHHHHh
Confidence 3567778888 4578888 77777443
No 371
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=21.28 E-value=22 Score=20.84 Aligned_cols=27 Identities=11% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHhhCCCCccHHHHHH
Q 042276 34 DRFDRARELLVSMGSKGCKQDAFSHSI 60 (71)
Q Consensus 34 g~~~~a~~~~~~m~~~g~~p~~~~~~~ 60 (71)
+.++.+..+++.|.+.|+.|....|+.
T Consensus 150 n~~~~i~~~~~~~~e~Gi~pE~e~fd~ 176 (311)
T 3e02_A 150 NTFSQIERGMTELGASGTRFEFECYDV 176 (311)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEEECSH
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEEcH
Confidence 457789999999999999887766554
No 372
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1
Probab=21.16 E-value=71 Score=17.05 Aligned_cols=24 Identities=8% Similarity=-0.112 Sum_probs=17.2
Q ss_pred HHHhhCCCCcc--HHHHHHHHHHHHh
Q 042276 44 VSMGSKGCKQD--AFSHSILINGGSA 67 (71)
Q Consensus 44 ~~m~~~g~~p~--~~~~~~li~~~~~ 67 (71)
..+...|+.|+ ..++..+.+++.+
T Consensus 119 ~~L~~~~I~P~~~~~t~~~I~~Ai~~ 144 (200)
T 1iqq_A 119 RILSKAKIEPDGKKRALLDIENAIRN 144 (200)
T ss_dssp HHHHHTTCCSSCCEECHHHHHHHHHT
T ss_pred HHHHHcCCccCCCeecHHHHHHHHHH
Confidence 34667889883 3678888888764
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.10 E-value=2.1e+02 Score=19.73 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcc
Q 042276 22 TCNALMDGFCLADRFDRARELLVSMGSKGCKQDAFSHSILINGGSARI 69 (71)
Q Consensus 22 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 69 (71)
.|..+.+.+.+.|++++|...+..+.....+ ......++..+|+.|
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCC
Confidence 5777777777778888877777766654332 344555665555544
No 374
>1dvo_A FINO, fertility inhibition protein O; repressor, bacterial conjugation, X-RAY crystallography, transcription; 2.00A {Escherichia coli} SCOP: a.136.1.1
Probab=21.03 E-value=1e+02 Score=16.15 Aligned_cols=23 Identities=0% Similarity=-0.172 Sum_probs=13.7
Q ss_pred hCCCCccHHHHHHHHHHHHhccc
Q 042276 48 SKGCKQDAFSHSILINGGSARIR 70 (71)
Q Consensus 48 ~~g~~p~~~~~~~li~~~~~~~~ 70 (71)
..+...+...+...|..|+++-+
T Consensus 78 ~~~~~ls~~~Lr~AL~~yt~s~r 100 (152)
T 1dvo_A 78 QRNIPLSHKKLRRAMKAITRSES 100 (152)
T ss_dssp HTTCSCCHHHHHHHHHHHHTSHH
T ss_pred hccCCCCHHHHHHHHHHHHCCHH
Confidence 34455566666666666666543
No 375
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=20.65 E-value=23 Score=20.75 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHhhCCCCccHHHHHH
Q 042276 34 DRFDRARELLVSMGSKGCKQDAFSHSI 60 (71)
Q Consensus 34 g~~~~a~~~~~~m~~~g~~p~~~~~~~ 60 (71)
+.++.+..+++.|.+.|+.|....|+.
T Consensus 150 n~~~~i~~~~~~~~e~Gi~pE~e~fd~ 176 (311)
T 3e49_A 150 NTFADIEFILKTCGGNGTRFEFECYDT 176 (311)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEEECSH
T ss_pred CCHHHHHHHHHHHHHcCCeeEEEEECH
Confidence 356789999999999999887766554
No 376
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.44 E-value=83 Score=14.83 Aligned_cols=44 Identities=9% Similarity=-0.033 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHhh
Q 042276 3 EANGLAELMIQRGVNPDTSTCNALMDGFC-----LADRFDRARELLVSMGS 48 (71)
Q Consensus 3 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~-----~~g~~~~a~~~~~~m~~ 48 (71)
+|.+++++.-...-.|....|-.+|.... +.|+. |.+++.+-..
T Consensus 19 eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 19 EVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 56677787765543455677777777543 46776 7777776654
No 377
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=20.29 E-value=48 Score=15.01 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=16.5
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 042276 30 FCLADRFDRARELLVSMGSK 49 (71)
Q Consensus 30 ~~~~g~~~~a~~~~~~m~~~ 49 (71)
|.+.++.++|.++-.+|...
T Consensus 38 f~~~~d~~eA~e~~~~lqa~ 57 (71)
T 1gh9_A 38 FGRADDFEEASELVRKLQEE 57 (71)
T ss_dssp BSCCSSHHHHHHHHHHHSSC
T ss_pred EEecCCHHHHHHHHHHHHhh
Confidence 45678999999999999754
No 378
>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein, icosahedral virus; 3.50A {Bluetongue virus} SCOP: e.28.1.1
Probab=20.05 E-value=86 Score=21.30 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=27.6
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042276 14 RGVNPDTSTCNALMDGFCLADRFDRARELLVSMGS 48 (71)
Q Consensus 14 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 48 (71)
.|..+.-.+|+.|+.++...|...+| .+++.|..
T Consensus 488 ~g~~~~yp~~~~m~r~L~~ag~~qea-ayl~~M~p 521 (901)
T 2btv_A 488 YGIGMTYHCYNEMLRMLVAAGKDSEA-AYFRSMLP 521 (901)
T ss_dssp TSSSCCCSHHHHHHHHHHHHSCHHHH-HHHHTTHH
T ss_pred cCCCcccHHHHHHHHHHHHhhhHHHH-HHHHHhhH
Confidence 46677888999999999999999777 67776653
Done!