BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042277
(899 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 202/352 (57%), Gaps = 34/352 (9%)
Query: 499 KGNIRVYCRIRPFLP--GQTKKQT-TIEYIGENGELIF----GNPSKPGKDGQRMFKFNK 551
KGNIRV R+RP G+ + T + + ++ +I G P F+ +K
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVS--------FELDK 54
Query: 552 VFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYR 611
VF P A+Q +VF + Q L+ S +DG+NVCIFAYGQTG+GKTYTM G + E+ G+N R
Sbjct: 55 VFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTA----ENPGINQR 110
Query: 612 ALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTS 671
AL LF+ Q + S Y + V EIYNE +RDLL + L I
Sbjct: 111 ALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLC----------- 159
Query: 672 QPNG---LAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGK 728
P+G L VP + V S +D+ ++ + G NR T LNE G
Sbjct: 160 -PDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGV 218
Query: 729 DLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHV 788
D TG+ G L+LVDLAGSERV +S A G RL+EAQHINKSLSALGDVI AL + HV
Sbjct: 219 DCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHV 278
Query: 789 PYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVEL 840
P+RNSKLT +LQ SL G +KTLM VQ++P + SE+L +LKFAERV VEL
Sbjct: 279 PFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/401 (36%), Positives = 227/401 (56%), Gaps = 33/401 (8%)
Query: 489 RRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQ-----TTIEYIGENGELIFGNPSKPGKDG 543
+R +N ++D+KG IRVYCRIRP ++ ++ TT++ E +P K K
Sbjct: 2 KRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVD------EFTVEHPWKDDKRK 55
Query: 544 QRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHE 603
Q ++ ++VF A+Q ++F DT+ L++S +DGYNVCIFAYGQTGSGKT+T+ G HE
Sbjct: 56 QHIY--DRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG----HE 109
Query: 604 EDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLH 663
+ G+ RA +LFN+ + + + MVE+Y + + DLL
Sbjct: 110 SNPGLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPK----------SAR 159
Query: 664 TLGIMSTSQPNGLA-VPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXX 722
L + G+ V + + P+++ E++ +++ G + R + T +NE
Sbjct: 160 RLKLEIKKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILS 219
Query: 723 XXXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALA 782
DL+T G L VDLAGSERV +S + G++LKEAQ INKSLSALGDVI AL+
Sbjct: 220 VVIESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALS 279
Query: 783 QKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGA 842
+ H+PYRN KLT ++ SLGG AKTLMFV ++P ++ E+ ++L +A RV +
Sbjct: 280 SGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDP 339
Query: 843 AR--SSKEGRDVRELMEQVASLKDTIAKKDDEIERLQLLKD 881
++ SSKE +++L VA K+ KK +E + + + +D
Sbjct: 340 SKHISSKEMVRLKKL---VAYWKEQAGKKGEEEDLVDIEED 377
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 206/364 (56%), Gaps = 21/364 (5%)
Query: 487 ENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQT-TIEYIGENG-ELIFGNPSKPGKDGQ 544
E + L N V DL+GNIRV+CRIRP L + + T Y E+ EL + K GQ
Sbjct: 54 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 113
Query: 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE 604
++F F++VF P ++Q+++F PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 114 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP----E 169
Query: 605 DWGVNYRALNDLFNLSQNRRS-SIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLH 663
GV R ++ LF+ + R+ YE+ +EIYNE + DLL+N+ D+
Sbjct: 170 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ--------KDME 221
Query: 664 TLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXX 723
M+ + N + V + + V + LM NRA +TA NE
Sbjct: 222 IR--MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 279
Query: 724 XXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ 783
G+ + G+++LVDLAGSE S T R+ E ++IN+SLS L +VI AL Q
Sbjct: 280 ELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ 335
Query: 784 KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAA 843
K H+PYRNSKLT +L SLGG +KTLMF+ ++P + + ES+ +L+FA V+ ++ A
Sbjct: 336 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKA 395
Query: 844 RSSK 847
+ ++
Sbjct: 396 KRNR 399
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 206/364 (56%), Gaps = 21/364 (5%)
Query: 487 ENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQT-TIEYIGENG-ELIFGNPSKPGKDGQ 544
E + L N V DL+GNIRV+CRIRP L + + T Y E+ EL + K GQ
Sbjct: 40 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 99
Query: 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE 604
++F F++VF P ++Q+++F PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 100 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP----E 155
Query: 605 DWGVNYRALNDLFNLSQNRRS-SIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLH 663
GV R ++ LF+ + R+ YE+ +EIYNE + DLL+N+ D+
Sbjct: 156 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ--------KDME 207
Query: 664 TLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXX 723
M+ + N + V + + V + LM NRA +TA NE
Sbjct: 208 IR--MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 265
Query: 724 XXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ 783
G+ + G+++LVDLAGSE S T R+ E ++IN+SLS L +VI AL Q
Sbjct: 266 ELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ 321
Query: 784 KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAA 843
K H+PYRNSKLT +L SLGG +KTLMF+ ++P + + ES+ +L+FA V+ ++ A
Sbjct: 322 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKA 381
Query: 844 RSSK 847
+ ++
Sbjct: 382 KRNR 385
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 205/364 (56%), Gaps = 21/364 (5%)
Query: 487 ENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQT-TIEYIGENG-ELIFGNPSKPGKDGQ 544
E + L N V DL+GNIRV+CRIRP L + + T Y E+ EL + K GQ
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 102
Query: 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE 604
++F F++VF P ++Q+++F PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP----E 158
Query: 605 DWGVNYRALNDLFNLSQNRRS-SIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLH 663
GV R ++ LF+ + R+ YE+ +EIYNE + DLL+N+ D+
Sbjct: 159 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ--------KDME 210
Query: 664 TLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXX 723
M+ + N + V + + V + LM NRA +TA NE
Sbjct: 211 IR--MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 268
Query: 724 XXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ 783
G+ + G+++LVDLAGSE S T R+ E ++I +SLS L +VI AL Q
Sbjct: 269 ELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQ 324
Query: 784 KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAA 843
K H+PYRNSKLT +L SLGG +KTLMF+ ++P + + ES+ +L+FA V+ ++ A
Sbjct: 325 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKA 384
Query: 844 RSSK 847
+ ++
Sbjct: 385 KRNR 388
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 195/368 (52%), Gaps = 44/368 (11%)
Query: 498 LKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIF----GNPS---------------- 537
LKGNIRV+CR+RP LPG+ G L+F G PS
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPP--------GLLLFPSGPGGPSDPPTRLSLSRSDERRG 71
Query: 538 ----KPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTY 593
P + F F++VF P + Q EVF + L++S LDGY VCIFAYGQTGSGKT+
Sbjct: 72 TLSGAPAPPPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTF 131
Query: 594 TMSGPSGPHEEDWGVNYRALNDLFNLSQNRRS-SIMYEVAVQMVEIYNEQVRDLL-TNDV 651
TM G G + G+ RAL LF+++Q Y VEIYNE VRDLL T
Sbjct: 132 TMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTR 191
Query: 652 FWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALN 711
C ++ G S L V +A PV+ ++V L+ + +NRA+ TA N
Sbjct: 192 KGQGGEC--EIRRAGPGSEE----LTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQN 245
Query: 712 EXXXXXXXXXXXXXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATG----DRLKEAQHI 767
E G+ G+ L LVDLAGSER+D A G +RL+E Q I
Sbjct: 246 ERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAI 305
Query: 768 NKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLS 827
N SLS LG VI AL+ K HVPYRNSKLT +LQ+SLGG AK LMFV ++P + SESL+
Sbjct: 306 NSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLN 365
Query: 828 TLKFAERV 835
+L+FA +V
Sbjct: 366 SLRFASKV 373
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 205/364 (56%), Gaps = 21/364 (5%)
Query: 487 ENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQT-TIEYIGENG-ELIFGNPSKPGKDGQ 544
E + L N V DL+ NIRV+CRIRP L + + T Y E+ EL + K GQ
Sbjct: 46 ERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 105
Query: 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE 604
++F F++VF P ++Q+++F PLI+S LDGYN+CIFAYGQTGSGKTYTM G E
Sbjct: 106 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP----E 161
Query: 605 DWGVNYRALNDLFNLSQNRRS-SIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLH 663
GV R ++ LF+ + R+ YE+ +EIYNE + DLL+N+ D+
Sbjct: 162 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ--------KDME 213
Query: 664 TLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXX 723
M+ + N + V + + V + LM NRA +TA NE
Sbjct: 214 IR--MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 271
Query: 724 XXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ 783
G+ + G+++LVDLAGSE S T R+ E ++IN+SLS L +VI AL Q
Sbjct: 272 ELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ 327
Query: 784 KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAA 843
K H+PYRNSKLT +L SLGG +KTLMF+ ++P + + ES+ +L+FA V+ ++ A
Sbjct: 328 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKA 387
Query: 844 RSSK 847
+ ++
Sbjct: 388 KRNR 391
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/357 (39%), Positives = 202/357 (56%), Gaps = 21/357 (5%)
Query: 487 ENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQT-TIEYIGENG-ELIFGNPSKPGKDGQ 544
E + L N V DL+GNIRV+CRIRP L + + T Y E+ EL + K GQ
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 102
Query: 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE 604
++F F++VF P ++Q+++F PLI+S LDGYN+CIFAYGQ+GSGKTYTM G E
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVP----E 158
Query: 605 DWGVNYRALNDLFNLSQNRRS-SIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLH 663
GV R ++ LF+ + R+ YE+ +EIYNE + DLL+N+ D+
Sbjct: 159 SVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ--------KDME 210
Query: 664 TLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXX 723
M+ + N + V + + V + LM NRA +TA NE
Sbjct: 211 IR--MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 268
Query: 724 XXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ 783
G+ + G+++LVDLAGSE S T R+ E ++IN+SLS L +VI AL Q
Sbjct: 269 ELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ 324
Query: 784 KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVEL 840
K H+PYRNSKLT +L SLGG +KTLMF+ ++P + + ES+ +L+FA V+ ++
Sbjct: 325 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 381
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 228 bits (582), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 206/364 (56%), Gaps = 24/364 (6%)
Query: 489 RRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGE---NGELIFGNPSKPGKDGQ- 544
R L NE+Q+L+GNIRVYCRIRP L T++ + E N + +K Q
Sbjct: 3 RTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV 62
Query: 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE 604
FKF+K+F T +VF + L++S LDGYNVCIFAYGQTGSGKT+TM P
Sbjct: 63 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD---- 118
Query: 605 DWGVNYRALNDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLH 663
G+ ++ +FN +++ + Y+V + +EIYNE + DLL +D +
Sbjct: 119 --GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDN------NNKEDT 170
Query: 664 TLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKN----RAIGATALNEXXXXXXX 719
++G+ + + + + + E+++I LK R+ +TA NE
Sbjct: 171 SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHS 230
Query: 720 XXXXXXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIF 779
G + KTG +G L+LVDLAGSER++ S+ GDRL+E Q+INKSLS LGDVI
Sbjct: 231 IFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIH 290
Query: 780 ALAQKSP---HVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVS 836
AL Q H+P+RNSKLT +LQ SL G +KTLMFV ++P + +E+L++L+FA +V+
Sbjct: 291 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVN 350
Query: 837 GVEL 840
L
Sbjct: 351 STRL 354
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 192/351 (54%), Gaps = 13/351 (3%)
Query: 498 LKGNIRVYCRIRPFLPG--QTKKQTTIEYIGE-NGELIFGNPSKPGKDGQRMFKFNKVFG 554
L+GNIRVYCR+RP L Q IE E G G+ F+F+ +F
Sbjct: 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFE 62
Query: 555 PDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALN 614
P T E+F + + L++S LDGYNVCIFAYGQTGSGKTYTM G+ L+
Sbjct: 63 PSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD------GMIPMTLS 116
Query: 615 DLFNLSQN-RRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQP 673
+F + N + YE+ + +EIYNE + DLL + LD I +
Sbjct: 117 HIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEK 176
Query: 674 NGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDLKTG 733
G + + + +TST V ++ K R+ AT NE G++L TG
Sbjct: 177 QGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTG 236
Query: 734 IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSP---HVPY 790
G L+LVDLAGSER++ S TG+RL+E Q+INKSLS LGDVI+AL ++P+
Sbjct: 237 ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPF 296
Query: 791 RNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELG 841
RNSKLT +LQ SL G +KTLMFV + PD N SE+L++L+FA +V+ ++
Sbjct: 297 RNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 225 bits (573), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 221/389 (56%), Gaps = 29/389 (7%)
Query: 496 QDLKGNIRVYCRIRPFLPGQ--TKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVF 553
+D+KG IRVYCR+RP + K++ I + E + K K Q M+ ++VF
Sbjct: 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDE---FTVEHLWKDDKAKQHMY--DRVF 55
Query: 554 GPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP-SGPHEEDWGVNYRA 612
+ATQ +VF DT+ L++S +DGYNVCIFAYGQTGSGKT+T+ G S P G+ RA
Sbjct: 56 DGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP-----GLTPRA 110
Query: 613 LNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQ 672
+++LF + + + + + MVE+Y + + DLL L L I S+
Sbjct: 111 MSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLK--------LDIKKDSK 162
Query: 673 PNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDLKT 732
++V + ++ +++ E++ ++ G + R T +NE +L+T
Sbjct: 163 -GMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT 221
Query: 733 GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRN 792
G L VDLAGSERV +S + G++LKEAQ INKSLSALGDVI AL+ + H+PYRN
Sbjct: 222 QAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRN 281
Query: 793 SKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAAR--SSKEGR 850
KLT ++ SLGG AKTLMFV ++P ++ E+ ++L +A RV + ++ SSKE
Sbjct: 282 HKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE-- 339
Query: 851 DVRELMEQVASLKDTIAKK--DDEIERLQ 877
V L + V+ K+ +K D+E+E +Q
Sbjct: 340 -VARLKKLVSYWKEQAGRKGDDEELEEIQ 367
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/364 (38%), Positives = 205/364 (56%), Gaps = 24/364 (6%)
Query: 489 RRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGE---NGELIFGNPSKPGKDGQ- 544
R L NE+Q+L+GNIRVY RIRP L T++ + E N + +K Q
Sbjct: 48 RTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQV 107
Query: 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE 604
FKF+K+F T +VF + L++S LDGYNV IFAYGQTGSGKT+TM P
Sbjct: 108 HEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD---- 163
Query: 605 DWGVNYRALNDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLH 663
G+ ++ +FN +++ + Y+V + +EIYNE + DLL +D +
Sbjct: 164 --GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDN------NNKEDT 215
Query: 664 TLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKN----RAIGATALNEXXXXXXX 719
++G+ + + + + + E+++I LK R+ +TA NE
Sbjct: 216 SIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHS 275
Query: 720 XXXXXXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIF 779
G + KTG +G L+LVDLAGSER++ S+ GDRL+E Q+INKSLSALGDVI
Sbjct: 276 IFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIH 335
Query: 780 ALAQKSP---HVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVS 836
AL Q H+P+RNSKLT +LQ SL G +KTLMFV ++P + +E+L++L+FA +V+
Sbjct: 336 ALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVN 395
Query: 837 GVEL 840
L
Sbjct: 396 STRL 399
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 199/355 (56%), Gaps = 24/355 (6%)
Query: 498 LKGNIRVYCRIRPFLPGQTKKQTTIEYIGE---NGELIFGNPSKPGKDGQ-RMFKFNKVF 553
++GNIRVYCRIRP L T++ + E N + +K Q FKF+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 554 GPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRAL 613
T +VF + L++S LDGYNVCIFAYGQTGSGKT+TM P G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 614 NDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQ 672
+ +FN +++ + Y+V + +EIYNE + DLL +D + ++G+ +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDN------NNKEDTSIGLKHEIR 168
Query: 673 PNGLAVPDASMHPVTSTEDVLELMDIGLKN----RAIGATALNEXXXXXXXXXXXXXXGK 728
+ + + + E+++I LK R+ +TA NE G
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGS 228
Query: 729 DLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSP-- 786
+ KTG +G L+LVDLAGSER++ S+ GDRL+E Q+INKSLS LGDVI AL Q
Sbjct: 229 NAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTK 288
Query: 787 -HVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVEL 840
H+P+RNSKLT +LQ SL G +KTLMFV ++P + +E+L++L+FA +V+ L
Sbjct: 289 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 216 bits (549), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 150/383 (39%), Positives = 202/383 (52%), Gaps = 63/383 (16%)
Query: 489 RRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYI------GENGELIFGNPSKPGKD 542
R L NE+Q+L+GNIRVYCRIRP LP + IE+I +NG+ G G
Sbjct: 17 RALHNELQELRGNIRVYCRIRPPLPHE---DDNIEHIKVQPFDDDNGDQ--GMTINRGNS 71
Query: 543 GQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPH 602
FKF+K+F T E+F + LI+S LDGYNVCIFAYGQTGSGKTYTM P
Sbjct: 72 QVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD-- 129
Query: 603 EEDWGVNYRALNDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLD 661
G+ +N +F+ + + Y+V+ + +EIYNE + DLL +
Sbjct: 130 ----GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSG----------- 174
Query: 662 LHTLGIMSTSQPNGLAVPDASMHPV---------------TSTEDVLELMDIGLKN---- 702
+ SQ N D S H + T D + +D LK
Sbjct: 175 -------APSQENNDRNAD-SKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKL 226
Query: 703 RAIGATALNEXXXXXXXXXXXXXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLK 762
R+ +TA NE GK+ TG G L+LVDLAGSER++ S G+RL+
Sbjct: 227 RSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLR 286
Query: 763 EAQHINKSLSALGDVIFALAQKSP-----HVPYRNSKLTQVLQSSLGGQAKTLMFVQLNP 817
E Q INKSLS LGDVI AL SP H+P+RNSKLT +LQ SL G +KTLMFV ++P
Sbjct: 287 ETQSINKSLSCLGDVIHAL--NSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISP 344
Query: 818 DVNSYSESLSTLKFAERVSGVEL 840
+E++++L+FA +V+ ++
Sbjct: 345 AALHLNETINSLRFASKVNNTKM 367
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 216 bits (549), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 197/353 (55%), Gaps = 24/353 (6%)
Query: 500 GNIRVYCRIRPFLPGQTKKQTTIEYIGE---NGELIFGNPSKPGKDGQ-RMFKFNKVFGP 555
GNIRVYCRIRP L T++ + E N + +K Q FKF+K+F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 556 DATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALND 615
T +VF + L++S LDGYNVCIFAYGQTGSGKT+TM P G+ ++
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTISH 115
Query: 616 LFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPN 674
+FN +++ + Y+V + +EIYNE + DLL +D + ++G+ + +
Sbjct: 116 IFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDN------NNKEDTSIGLKHEIRHD 169
Query: 675 GLAVPDASMHPVTSTEDVLELMDIGLKN----RAIGATALNEXXXXXXXXXXXXXXGKDL 730
+ + + E+++I LK R+ +TA NE G +
Sbjct: 170 QETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNA 229
Query: 731 KTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSP---H 787
KTG +G L+LVDLAGSER++ S+ GDRL+E Q+INKSLS LGDVI AL Q H
Sbjct: 230 KTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRH 289
Query: 788 VPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVEL 840
+P+RNSKLT +LQ SL G +KTLMFV ++P + +E+L++L+FA +V+ L
Sbjct: 290 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 215 bits (547), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 198/355 (55%), Gaps = 24/355 (6%)
Query: 498 LKGNIRVYCRIRPFLPGQTKKQTTIEYIGE---NGELIFGNPSKPGKDGQ-RMFKFNKVF 553
++GNIRVYCRIRP L T++ + E N + +K Q FKF+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 554 GPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRAL 613
T +VF + L++S LDGYNVCIFAYGQTGSGKT+TM P G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 614 NDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQ 672
+ +FN +++ + Y+V + +EIYNE + DLL +D + ++G+ +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDN------NNKEDTSIGLKHEIR 168
Query: 673 PNGLAVPDASMHPVTSTEDVLELMDIGLKN----RAIGATALNEXXXXXXXXXXXXXXGK 728
+ + + + E+++I LK R+ +TA NE G
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS 228
Query: 729 DLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSP-- 786
+ KTG +G L+LVDLAGS R++ S+ GDRL+E Q+INKSLS LGDVI AL Q
Sbjct: 229 NAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTK 288
Query: 787 -HVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVEL 840
H+P+RNSKLT +LQ SL G +KTLMFV ++P + +E+L++L+FA +V+ L
Sbjct: 289 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 198/355 (55%), Gaps = 24/355 (6%)
Query: 498 LKGNIRVYCRIRPFLPGQTKKQTTIEYIGE---NGELIFGNPSKPGKDGQ-RMFKFNKVF 553
++GNIRVYCRIRP L T++ + E N + +K Q FKF+K+F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 554 GPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRAL 613
T +VF + L++S LDGYNVCIFAYGQTGSGKT+TM P G+ +
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD------GIIPSTI 114
Query: 614 NDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQ 672
+ +FN +++ + Y+V + +EIYNE + DLL +D + ++G+ +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDN------NNKEDTSIGLKHEIR 168
Query: 673 PNGLAVPDASMHPVTSTEDVLELMDIGLKN----RAIGATALNEXXXXXXXXXXXXXXGK 728
+ + + + E+++I LK R+ +TA NE G
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS 228
Query: 729 DLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSP-- 786
+ KTG +G L+LVDLAGSER++ S+ GDRL+E Q+I KSLS LGDVI AL Q
Sbjct: 229 NAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTK 288
Query: 787 -HVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVEL 840
H+P+RNSKLT +LQ SL G +KTLMFV ++P + +E+L++L+FA +V+ L
Sbjct: 289 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 199 bits (505), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 200/351 (56%), Gaps = 32/351 (9%)
Query: 502 IRVYCRIRPFLPGQTKKQTTIEYIGEN---GELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
+RV R RP + G+ K + + + + G++ NP + + F F+ V+ +A
Sbjct: 23 VRVVVRCRP-MNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAK 81
Query: 559 QAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLF 617
Q E++ +T +PL+ SVL G+N IFAYGQTG+GKTYTM G G E+ GV + + +F
Sbjct: 82 QFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEK-RGVIPNSFDHIF 140
Query: 618 ---NLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPN 674
+ SQN++ Y V +EIY E++RDLL+ D T + +P+
Sbjct: 141 THISRSQNQQ----YLVRASYLEIYQEEIRDLLSKD------------QTKRLELKERPD 184
Query: 675 -GLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXX----XXXXXXXGKD 729
G+ V D S S +++ +M++G +NR++GAT +NE G D
Sbjct: 185 TGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLD 244
Query: 730 LKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ-KSPHV 788
+ I + G L+LVDLAGSER ++ A G+RLKEA IN SLSALG+VI AL KS H+
Sbjct: 245 GENHIRV-GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHI 303
Query: 789 PYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVE 839
PYR+SKLT++LQ SLGG AKT+M + P + E+L+TL++A R ++
Sbjct: 304 PYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK 354
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 190/346 (54%), Gaps = 32/346 (9%)
Query: 502 IRVYCRIRPFLPGQTK--KQTTIEY---IGENGELIFGNPSKPGKDGQRMFKFNKVFGPD 556
I+V CR RP + K + +++ + EN I G +++ F+KVF P+
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG----------KVYLFDKVFKPN 62
Query: 557 ATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALND 615
A+Q +V+++ + ++ VL GYN IFAYGQT SGKT+TM G G + G+ R +ND
Sbjct: 63 ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQ-GIIPRIVND 121
Query: 616 LFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNG 675
+FN ++ + + V EIY +++RDLL D+ + + N
Sbjct: 122 IFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL-------------DVSKVNLSVHEDKNR 168
Query: 676 LA-VPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDLKTGI 734
+ V A+ V+S EDV E+++ G NR I T +NE ++L+
Sbjct: 169 VPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQK 228
Query: 735 PLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ-KSPHVPYRNS 793
L G L+LVDLAGSE+V ++ A G L EA++INKSLSALG+VI ALA H+PYR+S
Sbjct: 229 KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDS 288
Query: 794 KLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVE 839
KLT++LQ SLGG A+T + + +P + SE+ STL F R V+
Sbjct: 289 KLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/348 (37%), Positives = 190/348 (54%), Gaps = 32/348 (9%)
Query: 501 NIRVYCRIRPFLPGQTKKQTTIEYIGENGELI--FGNP---SKPGKDGQRMFKFNKVFGP 555
+I+V R RP Q +E I G+ I F P + K+ Q F F++VF
Sbjct: 7 SIKVVARFRP--------QNRVE-IESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDM 57
Query: 556 DATQAEVFS-DTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALN 614
Q+++F +P + +L+GYN +FAYGQTG+GK+YTM G S + GV R +
Sbjct: 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVE 117
Query: 615 DLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLT--NDVFWILAICFLDLHTLGIMSTSQ 672
+F + ++I Y V V +EIY E++RDLL ND L +H +
Sbjct: 118 QIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQND--------NLPVH------EEK 163
Query: 673 PNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDLKT 732
G+ V V+S ++V E+M G RA+ AT +N+ K+++T
Sbjct: 164 NRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET 223
Query: 733 GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ-KSPHVPYR 791
G G L LVDLAGSE+V ++ A+G L+EA+ INKSLSALG VI AL KS HVPYR
Sbjct: 224 GSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYR 283
Query: 792 NSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVE 839
+SKLT++LQ SLGG ++T + + +P + +E+LSTL+F R ++
Sbjct: 284 DSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK 331
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 190/344 (55%), Gaps = 30/344 (8%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V CR RP + + + ++ GE+ +I SKP + F++VF +
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI---ASKP-------YAFDRVFQSSTS 57
Query: 559 QAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHE-EDWGVNYRALNDL 616
Q +V++D + +++ VL+GYN IFAYGQT SGKT+TM G H+ E G+ R + D+
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK--LHDPEGMGIIPRIVQDI 115
Query: 617 FNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGL 676
FN + ++ + + V EIY +++RDLL D+ + N +
Sbjct: 116 FNYIYSMDENLEFHIKVSYFEIYLDKIRDLL-------------DVSKTNLSVHEDKNRV 162
Query: 677 A-VPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDLKTGIP 735
V + V S ++V++ +D G NR + T +NE ++ +T
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222
Query: 736 LHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKL 795
L G L+LVDLAGSE+V ++ A G L EA++INKSLSALG+VI ALA+ S +VPYR+SK+
Sbjct: 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKM 282
Query: 796 TQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVE 839
T++LQ SLGG +T + + +P + SE+ STL F +R ++
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 189/343 (55%), Gaps = 30/343 (8%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V CR RP + + + ++ GE+ +I SKP + F++VF +
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI---ASKP-------YAFDRVFQSSTS 57
Query: 559 QAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHE-EDWGVNYRALNDL 616
Q +V++D + +++ VL+GYN IFAYGQT SGKT+TM G H+ E G+ R + D+
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK--LHDPEGMGIIPRIVQDI 115
Query: 617 FNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGL 676
FN + ++ + + V EIY +++RDLL D+ + N +
Sbjct: 116 FNYIYSMDENLEFHIKVSYFEIYLDKIRDLL-------------DVSKTNLSVHEDKNRV 162
Query: 677 A-VPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDLKTGIP 735
V + V S ++V++ +D G NR + T +NE ++ +T
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222
Query: 736 LHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKL 795
L G L+LVDLAGSE+V ++ A G L EA++INKSLSALG+VI ALA+ S +VPYR+SK+
Sbjct: 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKM 282
Query: 796 TQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
T++LQ SLGG +T + + +P + SE+ STL F +R +
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 186/349 (53%), Gaps = 27/349 (7%)
Query: 501 NIRVYCRIRPFLPGQTKKQT-TIEYIGENGELIFGNPSKPGKDGQ------RMFKFNKVF 553
NI+V R RP +T++ I + E + +P + K R F F+ V+
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 554 GPDATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRA 612
+ +F + +PLI +VL+G+N IFAYGQTG+GKT+TM G ++E+ G +
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGG----NKEEPGAIPNS 120
Query: 613 LNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQ 672
LF+ + S+ + V +E+YNE++RDL+ N+ L +
Sbjct: 121 FKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPL-------------KEDK 167
Query: 673 PNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDL-- 730
G+ V SMH VT+ ++ LMD G NR + AT +N+ ++
Sbjct: 168 TRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE 227
Query: 731 KTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPY 790
+ G L+LVDLAGSER ++ ATG+ L E IN SLSALG VI L + + H+PY
Sbjct: 228 NKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPY 287
Query: 791 RNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVE 839
R+SKLT++LQ SLGG +KTLM ++P +Y E++STL++A+R ++
Sbjct: 288 RDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 186/358 (51%), Gaps = 31/358 (8%)
Query: 498 LKGNIRVYCRIRPFLPGQTKK-----QTTIEYIGENG-------ELIFGNPSKPGKDGQR 545
LKGNIRV+CRIR + + I+Y EL+ R
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLR 431
Query: 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEED 605
F F+K+F + + VF + LI+ LDG NVC+FAYGQTGSGKT+TMS P+
Sbjct: 432 -FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTN----- 485
Query: 606 WGVNYRALNDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHT 664
G+ +L +FN + + + Y V + +EIYNE + DLL + D +T
Sbjct: 486 -GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKI---------DPNT 535
Query: 665 -LGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXX 723
I V + S + S E + +++ K R+ AT N+
Sbjct: 536 KYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFII 595
Query: 724 XXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ 783
G + T +G L+L+DLAGSER++ S A GDRLKE Q INKSLS LGDVI +L
Sbjct: 596 DLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNL 655
Query: 784 K-SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVEL 840
K HVPYRNSKLT +L+ SLGG +KTLMFV ++P +E++++L+FA +V+ +
Sbjct: 656 KDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 189 bits (479), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 189/344 (54%), Gaps = 30/344 (8%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V CR RP + + + ++ GE+ +I SKP + F++VF +
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMI---ASKP-------YAFDRVFQSSTS 57
Query: 559 QAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHE-EDWGVNYRALNDL 616
Q +V++D + +++ VL+GYN IFAYGQT SGK +TM G H+ E G+ R + D+
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGK--LHDPEGMGIIPRIVQDI 115
Query: 617 FNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGL 676
FN + ++ + + V EIY +++RDLL D+ + N +
Sbjct: 116 FNYIYSMDENLEFHIKVSYFEIYLDKIRDLL-------------DVSKTNLSVHEDKNRV 162
Query: 677 A-VPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDLKTGIP 735
V + V S ++V++ +D G NR + T +NE ++ +T
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222
Query: 736 LHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKL 795
L G L+LVDLAGSE+V ++ A G L EA++INKSLSALG+VI ALA+ S +VPYR+SK+
Sbjct: 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKM 282
Query: 796 TQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVE 839
T++LQ SLGG +T + + +P + SE+ STL F +R ++
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 163/299 (54%), Gaps = 24/299 (8%)
Query: 547 FKFNKVFGPDATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEED 605
F F+ VF +TQ+EVF T +P++RS L+GYN + AYG TG+GKT+TM G + ++
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA----DE 129
Query: 606 WGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTL 665
GV Y + L+ + + AV +E+YNEQ+RDLL N L
Sbjct: 130 PGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNS------------GPL 177
Query: 666 GIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXX 725
+ +Q G+ V ++H S+E++L L+D G KNR T +N
Sbjct: 178 AVREDTQK-GVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYL 236
Query: 726 XGKDLKTGIPLH---GNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALA 782
+D I + + L+DLAGSER S A G R E +IN+SL ALG+VI ALA
Sbjct: 237 RQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALA 296
Query: 783 ---QKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
+K+ H+PYRNSKLT++L+ SLGG +T+M ++P Y ++ +TLK+A R +
Sbjct: 297 DSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 179 bits (454), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/358 (34%), Positives = 190/358 (53%), Gaps = 38/358 (10%)
Query: 501 NIRVYCRIRPFLPGQ--TKKQTTIEYIGENGELIFGNPSKPGKDGQ--RMFKFNKVFGPD 556
NI+VY R+RP + + ++ +G E++ ++ D + + F F++ FGP+
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPR-EVV----TRHTLDSKLTKKFTFDRSFGPE 78
Query: 557 ATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG-------PSGPHEEDWGV 608
+ Q +V+S PLI VL+GYN +FAYGQTG+GKT+TM G S + D G+
Sbjct: 79 SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGI 138
Query: 609 NYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIM 668
RAL+ LF+ + R + Y + + +E+YNE++ DLL+ D D + I
Sbjct: 139 IPRALSHLFD--ELRMMEVEYTMRISYLELYNEELCDLLSTD----------DTTKIRIF 186
Query: 669 STSQPNG-LAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
S G + + PV S +DV +L++ G + R T +N
Sbjct: 187 DDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHI 246
Query: 728 KDLKTGIPLH-----GNLHLVDLAGSERVDRS-EATGDRLKEAQHINKSLSALGDVIFAL 781
++ GI G L+LVDLAGSE V ++ G R++E +IN+SL LG VI AL
Sbjct: 247 RE--NGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL 304
Query: 782 AQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVE 839
++PHVPYR SKLT++LQ SLGG+ KT + ++P E+LSTL++A R ++
Sbjct: 305 VDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/344 (36%), Positives = 184/344 (53%), Gaps = 50/344 (14%)
Query: 529 GELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQT 587
G++ NP + + F F+ V+ + QA+++ +T +PLI SVL G+N +FAYGQT
Sbjct: 52 GQVTLRNPRAAPGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQT 111
Query: 588 GSGKTYTMSGPSGPHEEDWGVNYRALNDLF---NLSQNRRSSIMYEVAVQMVEIYNEQVR 644
G+GKTYTM G + E GV A +F + SQN++ Y V +EIY E++R
Sbjct: 112 GTGKTYTMQG-TWVEPELRGVIPNAFEHIFTHISRSQNQQ----YLVRASYLEIYQEEIR 166
Query: 645 DLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRA 704
DLL+ + L + + G+ + D S + +++ +M++G + RA
Sbjct: 167 DLLSKEPGKRLE-----------LKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRA 215
Query: 705 IGATALNEXXXXXXX----XXXXXXXGKDLKTGIPLHGNLHLVDLAGSERVDRS---EAT 757
+G+T +NE G D + I + G L+LVDLAGSER +++ A
Sbjct: 216 VGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRV-GKLNLVDLAGSERQNKAGPNTAG 274
Query: 758 G---------------------DRLKEAQHINKSLSALGDVIFALA-QKSPHVPYRNSKL 795
G +R KEA IN SLSALG+VI ALA +S H+PYR+SKL
Sbjct: 275 GAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKL 334
Query: 796 TQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVE 839
T++LQ SLGG AKT+M L P +SY ESLSTL+FA R ++
Sbjct: 335 TRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIK 378
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 176 bits (445), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 184/354 (51%), Gaps = 28/354 (7%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V R+RPF + K + +E E+ K ++ + F+ VFG
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 559 QAEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEED-W------GVNY 610
Q +V+ S P++ V+ GYN IFAYGQTG+GKT+TM G P+EE W G+
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 611 RALNDLF-NLSQNRRSSIMYEVAVQMVEIYNEQVRDLL--TNDVFWILAICFLDLHTLGI 667
R L+ +F L+ N + V V ++EIYNE++ DLL ++DV L + F D
Sbjct: 138 RTLHQIFEKLTDN---GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQM-FDD------ 187
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G+ + V + ++V ++++ G R AT +N
Sbjct: 188 --PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 728 KDLKTG---IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784
K+ + G L+LVDLAGSE + RS A R +EA +IN+SL LG VI AL ++
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
+PHVPYR SKLT++LQ SLGG+ +T + ++P + E+LSTL++A R +
Sbjct: 306 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 131/365 (35%), Positives = 193/365 (52%), Gaps = 46/365 (12%)
Query: 500 GNIRVYCRIRPFLPGQTKKQT--TIEYIGENGELIFGNPSKPGKDGQRMFKFNKVF---- 553
+++V R+RPF + + + I+ G ++ NP +P K+ + F F+ +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV--NPKQP-KETPKSFSFDYSYWSHT 60
Query: 554 GPD----ATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGV 608
P+ A+Q +V+ D + +++ +GYNVCIFAYGQTG+GK+YTM G ++ G+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGI 118
Query: 609 NYRALNDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGI 667
+ DLF+ ++ ++ Y V V +EIY E+VRDLL L + H L
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV---REHPLL- 174
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G V D S VTS D+ +LMD G K R + AT +NE
Sbjct: 175 -------GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQ 227
Query: 728 K--DLKTGIPLH--GNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ 783
K D +T I + LVDLAGSER D + A G RLKE +INKSL+ LG VI ALA+
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 287
Query: 784 ------------KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNP-DVNSYSESLSTLK 830
K+ +PYR+S LT +L+ +LGG ++T M L+P D+N Y E+LSTL+
Sbjct: 288 MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN-YDETLSTLR 346
Query: 831 FAERV 835
+A+R
Sbjct: 347 YADRA 351
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 183/354 (51%), Gaps = 28/354 (7%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V R RPF + K + +E E+ K ++ + F+ VFG
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 559 QAEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE-DW------GVNY 610
Q +V+ S P++ V+ GYN IFAYGQTG+GKT+TM G P+EE W G+
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 611 RALNDLF-NLSQNRRSSIMYEVAVQMVEIYNEQVRDLL--TNDVFWILAICFLDLHTLGI 667
R L+ +F L+ N + V V ++EIYNE++ DLL ++DV L + F D
Sbjct: 129 RTLHQIFEKLTDN---GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQM-FDD------ 178
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G+ + V + ++V ++++ G R AT +N
Sbjct: 179 --PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 236
Query: 728 KDLKTG---IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784
K+ + G L+LVDLAGSE + RS A R +EA +IN+SL LG VI AL ++
Sbjct: 237 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 296
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
+PHVPYR SKLT++LQ SLGG+ +T + ++P + E+LSTL++A R +
Sbjct: 297 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 183/354 (51%), Gaps = 28/354 (7%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V R RPF + K + +E E+ K ++ + F+ VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 559 QAEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE-DW------GVNY 610
Q +V+ S P++ V+ GYN IFAYGQTG+GKT+TM G P+EE W G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 611 RALNDLF-NLSQNRRSSIMYEVAVQMVEIYNEQVRDLL--TNDVFWILAICFLDLHTLGI 667
R L+ +F L+ N + V V ++EIYNE++ DLL ++DV L + F D
Sbjct: 138 RTLHQIFEKLTDN---GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQM-FDD------ 187
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G+ + V + ++V ++++ G R AT +N
Sbjct: 188 --PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 728 KDLKTG---IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784
K+ + G L+LVDLAGSE + RS A R +EA +IN+SL LG VI AL ++
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
+PHVPYR SKLT++LQ SLGG+ +T + ++P + E+LSTL++A R +
Sbjct: 306 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 183/354 (51%), Gaps = 28/354 (7%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V R RPF + K + +E E+ K ++ + F+ VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 559 QAEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE-DW------GVNY 610
Q +V+ S P++ V+ GYN IFAYGQTG+GKT+TM G P+EE W G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 611 RALNDLF-NLSQNRRSSIMYEVAVQMVEIYNEQVRDLL--TNDVFWILAICFLDLHTLGI 667
R L+ +F L+ N + V V ++EIYNE++ DLL ++DV L + F D
Sbjct: 138 RTLHQIFEKLTDN---GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQM-FDD------ 187
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G+ + V + ++V ++++ G R AT +N
Sbjct: 188 --PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 728 KDLKTG---IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784
K+ + G L+LVDLAGSE + RS A R +EA +IN+SL LG VI AL ++
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
+PHVPYR SKLT++LQ SLGG+ +T + ++P + E+LSTL++A R +
Sbjct: 306 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 183/354 (51%), Gaps = 28/354 (7%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V R RPF + K + +E E+ K ++ + F+ VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 559 QAEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE-DW------GVNY 610
Q +V+ S P++ V+ GYN IFAYGQTG+GKT+TM G P+EE W G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 611 RALNDLF-NLSQNRRSSIMYEVAVQMVEIYNEQVRDLL--TNDVFWILAICFLDLHTLGI 667
R L+ +F L+ N + V V ++EIYNE++ DLL ++DV L + F D
Sbjct: 138 RTLHQIFEKLTDN---GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQM-FDD------ 187
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G+ + V + ++V ++++ G R AT +N
Sbjct: 188 --PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 728 KDLKTG---IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784
K+ + G L+LVDLAGSE + RS A R +EA +IN+SL LG VI AL ++
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
+PHVPYR SKLT++LQ SLGG+ +T + ++P + E+LSTL++A R +
Sbjct: 306 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 183/354 (51%), Gaps = 28/354 (7%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V R RPF + K + +E E+ K ++ + F+ VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 559 QAEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE-DW------GVNY 610
Q +V+ S P++ V+ GYN IFAYGQTG+GKT+TM G P+EE W G+
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 611 RALNDLF-NLSQNRRSSIMYEVAVQMVEIYNEQVRDLL--TNDVFWILAICFLDLHTLGI 667
R L+ +F L+ N + V V ++EIYNE++ DLL ++DV L + F D
Sbjct: 138 RTLHQIFEKLTDN---GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQM-FDD------ 187
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G+ + V + ++V ++++ G R AT +N
Sbjct: 188 --PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 245
Query: 728 KDLKTG---IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784
K+ + G L+LVDLAGSE + RS A R +EA +IN+SL LG VI AL ++
Sbjct: 246 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 305
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
+PHVPYR SKLT++LQ SLGG+ +T + ++P + E+LSTL++A R +
Sbjct: 306 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 183/354 (51%), Gaps = 28/354 (7%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V R RPF + K + +E E+ K ++ + F+ VFG
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 559 QAEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE-DW------GVNY 610
Q +V+ S P++ V+ GYN IFAYGQTG+GKT+TM G P+EE W G+
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 611 RALNDLF-NLSQNRRSSIMYEVAVQMVEIYNEQVRDLL--TNDVFWILAICFLDLHTLGI 667
R L+ +F L+ N + V V ++EIYNE++ DLL ++DV L + F D
Sbjct: 137 RTLHQIFEKLTDN---GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQM-FDD------ 186
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G+ + V + ++V ++++ G R AT +N
Sbjct: 187 --PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 244
Query: 728 KDLKTG---IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784
K+ + G L+LVDLAGSE + RS A R +EA +IN+SL LG VI AL ++
Sbjct: 245 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 304
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
+PHVPYR SKLT++LQ SLGG+ +T + ++P + E+LSTL++A R +
Sbjct: 305 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 131/365 (35%), Positives = 193/365 (52%), Gaps = 46/365 (12%)
Query: 500 GNIRVYCRIRPFLPGQTKKQT--TIEYIGENGELIFGNPSKPGKDGQRMFKFNKVF---- 553
+++V R+RPF + + + I+ G ++ NP +P K+ + F F+ +
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV--NPKQP-KETPKSFSFDYSYWSHT 76
Query: 554 GPD----ATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGV 608
P+ A+Q +V+ D + +++ +GYNVCIFAYGQTG+GK+YTM G ++ G+
Sbjct: 77 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGI 134
Query: 609 NYRALNDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGI 667
+ DLF+ ++ ++ Y V V +EIY E+VRDLL L + H L
Sbjct: 135 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV---REHPLL- 190
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G V D S VTS D+ +LMD G K R + AT +NE
Sbjct: 191 -------GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQ 243
Query: 728 K--DLKTGIPLH--GNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ 783
K D +T I + LVDLAGSER D + A G RLKE +INKSL+ LG VI ALA+
Sbjct: 244 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 303
Query: 784 ------------KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNP-DVNSYSESLSTLK 830
K+ +PYR+S LT +L+ +LGG ++T M L+P D+N Y E+LSTL+
Sbjct: 304 MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN-YDETLSTLR 362
Query: 831 FAERV 835
+A+R
Sbjct: 363 YADRA 367
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 131/368 (35%), Positives = 194/368 (52%), Gaps = 46/368 (12%)
Query: 500 GNIRVYCRIRPFLPGQTKKQT--TIEYIGENGELIFGNPSKPGKDGQRMFKFNKVF---- 553
+++V R+RPF + + + I+ G ++ NP +P K+ + F F+ +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV--NPKQP-KETPKSFSFDYSYWSHT 60
Query: 554 GPD----ATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGV 608
P+ A+Q +V+ D + +++ +GYNVCIFAYGQTG+GK+YTM G ++ G+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGI 118
Query: 609 NYRALNDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGI 667
+ DLF+ ++ ++ Y V V +EIY E+VRDLL L + H L
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV---REHPLL- 174
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G V D S VTS D+ +LMD G K R + AT +NE
Sbjct: 175 -------GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQ 227
Query: 728 K--DLKTGIPLH--GNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ 783
K D +T I + LVDLAGSER D + A G RLKE +INKSL+ LG VI ALA+
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 287
Query: 784 ------------KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNP-DVNSYSESLSTLK 830
K+ +PYR+S LT +L+ +LGG ++T M L+P D+N Y E+LSTL+
Sbjct: 288 MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN-YDETLSTLR 346
Query: 831 FAERVSGV 838
+A+R +
Sbjct: 347 YADRAKQI 354
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 183/354 (51%), Gaps = 28/354 (7%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V R RPF + K + +E E+ K ++ + F+ VFG
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 559 QAEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE-DW------GVNY 610
Q +V+ S P++ V+ GYN IFAYGQTG+GKT+TM G P+EE W G+
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 611 RALNDLF-NLSQNRRSSIMYEVAVQMVEIYNEQVRDLL--TNDVFWILAICFLDLHTLGI 667
R L+ +F L+ N + V V ++EIYNE++ DLL ++DV L + F D
Sbjct: 123 RTLHQIFEKLTDN---GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQM-FDD------ 172
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G+ + V + ++V ++++ G R AT +N
Sbjct: 173 --PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 230
Query: 728 KDLKTG---IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784
K+ + G L+LVDLAGSE + RS A R +EA +IN+SL LG VI AL ++
Sbjct: 231 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 290
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
+PHVPYR SKLT++LQ SLGG+ +T + ++P + E+LSTL++A R +
Sbjct: 291 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 183/354 (51%), Gaps = 28/354 (7%)
Query: 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558
NI+V R RPF + K + +E E+ K ++ + F+ VFG
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 559 QAEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEE-DW------GVNY 610
Q +V+ S P++ V+ GYN IFAYGQTG+GKT+TM G P+EE W G+
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 611 RALNDLF-NLSQNRRSSIMYEVAVQMVEIYNEQVRDLL--TNDVFWILAICFLDLHTLGI 667
R L+ +F L+ N + V V ++EIYNE++ DLL ++DV L + F D
Sbjct: 140 RTLHQIFEKLTDN---GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQM-FDD------ 189
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G+ + V + ++V ++++ G R AT +N
Sbjct: 190 --PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 247
Query: 728 KDLKTG---IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784
K+ + G L+LVDLAGSE + RS A R +EA +IN+SL LG VI AL ++
Sbjct: 248 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 307
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838
+PHVPYR SKLT++LQ SLGG+ +T + ++P + E+LSTL++A R +
Sbjct: 308 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 131/368 (35%), Positives = 194/368 (52%), Gaps = 46/368 (12%)
Query: 500 GNIRVYCRIRPFLPGQTKKQT--TIEYIGENGELIFGNPSKPGKDGQRMFKFNKVF---- 553
+++V R+RPF + + + I+ G ++ NP +P K+ + F F+ +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV--NPKQP-KETPKSFSFDYSYWSHT 60
Query: 554 GPD----ATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGV 608
P+ A+Q +V+ D + +++ +GYNVCIFAYGQTG+GK+YTM G ++ G+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ--EKDQQGI 118
Query: 609 NYRALNDLFN-LSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGI 667
+ DLF+ ++ ++ Y V V +EIY E+VRDLL L + H L
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV---REHPLL- 174
Query: 668 MSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXG 727
G V D S VTS D+ +LMD G K R + AT +NE
Sbjct: 175 -------GPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQ 227
Query: 728 K--DLKTGIPLH--GNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ 783
K D +T I + LVDLAGSER D + A G RLKE +INKSL+ LG VI ALA+
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 287
Query: 784 ------------KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNP-DVNSYSESLSTLK 830
K+ +PYR+S LT +L+ +LGG ++T M L+P D+N Y E+LSTL+
Sbjct: 288 MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN-YDETLSTLR 346
Query: 831 FAERVSGV 838
+A+R +
Sbjct: 347 YADRAKQI 354
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 185/358 (51%), Gaps = 39/358 (10%)
Query: 502 IRVYCRIRPFLPGQTKKQTTIEYIGENGELIFG----NPSKPGKDGQ-RMFKFNKVFGP- 555
++V RIRP +T T + ++I N SK GQ ++F ++ F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 556 DATQAEVFSDT--------QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWG 607
D + E ++ + ++++ DGYN CIFAYGQTGSGK+YTM G + + G
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA----DQPG 118
Query: 608 VNYRALNDLFNLSQNRRSSIM-YEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLG 666
+ R + LF +Q + ++V V +EIYNE+VRDLL TL
Sbjct: 119 LIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKG---------SRQTLK 169
Query: 667 IMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXX 726
+ S G V S VTS +D+ LM G K+R + AT +NE
Sbjct: 170 VREHSVL-GPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLT 228
Query: 727 GK--DLKTGIPLH--GNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALA 782
D+K+G G L LVDLAGSER ++ A GDRLKE +INKSL+ LG VI ALA
Sbjct: 229 HTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALA 288
Query: 783 QKSP------HVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAER 834
+S VPYR+S LT +L+ SLGG +KT M ++P ++Y E+LSTL++A+R
Sbjct: 289 DQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADR 346
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 178/350 (50%), Gaps = 37/350 (10%)
Query: 502 IRVYCRIRPFLPGQT--KKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQ 559
+RV R+RP LP + Q+ ++ G + G R F F+ V DA Q
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGR--------DRHFGFHVVLAEDAGQ 64
Query: 560 AEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPH--EEDWGVNYRALNDL 616
V+ + QPL+ + +G+N +FAYGQTGSGKTYTM S E++ G+ RA+ +
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEA 124
Query: 617 FNL-SQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNG 675
F L +N + V V +E+Y E+ RDLL + D+ + +
Sbjct: 125 FKLIDENDLLDCL--VHVSYLEVYKEEFRDLLE------VGTASRDIQ----LREDERGN 172
Query: 676 LAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKD-----L 730
+ + V ++VL L+++G R GAT LN + L
Sbjct: 173 VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRL 232
Query: 731 KTGIP---LHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALA---QK 784
P L H VDLAGSERV ++ +TG+RLKE+ IN SL ALG+VI AL ++
Sbjct: 233 PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRR 292
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAER 834
H+PYR+SK+T++L+ SLGG AKT+M ++P + + E+L+TL +A R
Sbjct: 293 GSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 176/350 (50%), Gaps = 37/350 (10%)
Query: 502 IRVYCRIRPFLPGQT--KKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQ 559
+RV R+RP LP + Q+ ++ G + G R F F+ V DA Q
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGR--------DRHFGFHVVLAEDAGQ 64
Query: 560 AEVF-SDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPH--EEDWGVNYRALNDL 616
V+ + QPL+ + +G+N +FAYGQTGSGKTYTM S E++ G+ RA+ +
Sbjct: 65 EAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEA 124
Query: 617 FNL-SQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNG 675
F L +N + V V +E+Y E+ RDLL + D+ + +
Sbjct: 125 FKLIDENDLLDCL--VHVSYLEVYKEEFRDLLE------VGTASRDIQ----LREDERGN 172
Query: 676 LAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKD-----L 730
+ + V ++VL L+++G R GAT LN + L
Sbjct: 173 VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRL 232
Query: 731 KTGIP---LHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALA---QK 784
P L H VDLAGSERV ++ +TG+ KE+ IN SL ALG+VI AL ++
Sbjct: 233 PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRR 292
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAER 834
++PYR+SK+T++L+ SLGG AKT+M ++P + + E+L+TL +A R
Sbjct: 293 GSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 171/350 (48%), Gaps = 34/350 (9%)
Query: 496 QDLKGNIRVYCRIRPFLPGQTKKQTTIEYIG-ENGELIFGNPSKPGKDGQRMFK--FNKV 552
Q +RV R+RPF+ G G ++ L N ++ Q K F+
Sbjct: 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIAN----WRNHQETLKYQFDAF 72
Query: 553 FGPDATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYR 611
+G +TQ ++++ + QP++R +L+G N + AYG TG+GKT+TM G E GV R
Sbjct: 73 YGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG----SPEQPGVIPR 128
Query: 612 ALNDLFNLSQNRRS---SIMYEVAVQMVEIYNEQVRDLL---TNDVFWILAICFLDLHTL 665
AL DL L++ + V + +EIY E+V DLL + D+
Sbjct: 129 ALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDL-------------- 174
Query: 666 GIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXX 725
++ + +P S P++S D +NR +GAT LN+
Sbjct: 175 -VIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKV 233
Query: 726 XGKD-LKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784
++ L G L+L+DLAGSE R+ G RLKE+ IN SL LG V+ AL Q
Sbjct: 234 DQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG 293
Query: 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAER 834
P VPYR+SKLT++LQ SLGG A +++ + P+ Y +++S L FA R
Sbjct: 294 LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAAR 343
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 134/422 (31%), Positives = 196/422 (46%), Gaps = 73/422 (17%)
Query: 496 QDLKGNIRVYCRIRPFLPGQTKKQT----TIEYIGENGELIFGNPSK----PGKDGQRM- 546
+D N+RV R+R FLP + ++ ++ E L+ + G +R+
Sbjct: 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVL 93
Query: 547 ----FKFNKVFGPDATQAEVFSDTQPLIRSV--------LDGYNVCIFAYGQTGSGKTYT 594
F F+K F T+ E ++ + + S+ +GY+ CIFAYGQTGSGK+YT
Sbjct: 94 EEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYT 153
Query: 595 MSG-PSGPHEEDWGVNYRALNDLFNL---SQNRRSSIMYEVAVQMVEIYNEQVRDLLT-- 648
M G P P G+ R DLF +Q+ +I Y V V E+YNE VRDLL
Sbjct: 154 MMGTPDQP-----GLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPV 208
Query: 649 --NDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIG 706
N + L + S G V D + PV E+++ M IG +R +
Sbjct: 209 VPNKPPYYLKV-----------RESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVA 257
Query: 707 ATALNEXXXXXXX--XXXXXXXGKDLKTG--IPLHGNLHLVDLAGSERVDRSEATGDRLK 762
+T +N+ DL+T + LVDLAGSER +EATG RL+
Sbjct: 258 STKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLR 317
Query: 763 EAQHINKSLSALGDVIFALAQ-----------------KSPH-----VPYRNSKLTQVLQ 800
E +INKSL+ LG VI ALA ++P VPYR+S LT +L+
Sbjct: 318 EGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLK 377
Query: 801 SSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRDVRELMEQVA 860
SLGG +KT M ++P Y E+LSTL++A++ + A + +G E Q+
Sbjct: 378 DSLGGNSKTAMIACISP--TDYDETLSTLRYADQAKRIRTRAVVNQVDGVSAAERDAQIP 435
Query: 861 SL 862
S+
Sbjct: 436 SI 437
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 172/344 (50%), Gaps = 34/344 (9%)
Query: 499 KGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIF--GNPSKPGKDGQRMFKFNKVFGPD 556
+G + V R+RP + E +GE ++ + N DG + F F++VF +
Sbjct: 3 EGAVAVCVRVRPL-------NSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGN 55
Query: 557 ATQAEVFSD-TQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALND 615
T V+ + P+I S + GYN IFAYGQT SGKTYTM G E+ GV RA++D
Sbjct: 56 ETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGS----EDHLGVIPRAIHD 111
Query: 616 LFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNG 675
+F + + + + V +EIYNE + DLL C I+
Sbjct: 112 IFQKIK-KFPDREFLLRVSYMEIYNETITDLL----------CGTQKMKPLIIREDVNRN 160
Query: 676 LAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDLKTGIP 735
+ V D + V ++E L+ + G K+R G T +N+ ++
Sbjct: 161 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSN 220
Query: 736 LHG-----NLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALA--QKSPHV 788
G +L+LVDLAGSER ++ A G RLKE +IN+SL LG VI L+ Q +
Sbjct: 221 CEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFI 280
Query: 789 PYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFA 832
YR+SKLT++LQ+SLGG AKT + + P S+ E+L+ L+FA
Sbjct: 281 NYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFA 322
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 149/293 (50%), Gaps = 14/293 (4%)
Query: 547 FKFNKVFGPDATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEED 605
FK + V DA+Q V+ + ++ LDGYN I YGQTG+GKTYTM G + ++
Sbjct: 74 FKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHR 132
Query: 606 WGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTL 665
G+ RAL +F + + R + + V V +EIYNE + DLL+ + ++
Sbjct: 133 -GILPRALQQVFRMIEERPTHAI-TVRVSYLEIYNESLFDLLS-------TLPYVGPSVT 183
Query: 666 GIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXX--XXXXX 723
+ P G+ + S+H + ED L+ G NR I + +N+
Sbjct: 184 PMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYL 243
Query: 724 XXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALA- 782
+ L + ++LVDLAGSER+ +S + G LKEA +INKSLS L I AL
Sbjct: 244 EAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGD 303
Query: 783 QKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERV 835
QK H+P+R KLT L+ SLGG ++ + + E+LS+L+FA R+
Sbjct: 304 QKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRM 356
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 151/295 (51%), Gaps = 24/295 (8%)
Query: 547 FKFNKVFGPDATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP-SGPHEE 604
F F+ F A+ V+ T +PL++++ +G FAYGQTGSGKT+TM G SG +
Sbjct: 123 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 182
Query: 605 -DWGVNYRALNDLFNL-SQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDL 662
G+ A D+F L +Q R ++ EV V EIYN +V DLL
Sbjct: 183 ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA----------- 231
Query: 663 HTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXX 722
L ++ S+ + V + VT +DV++++++G R G T N
Sbjct: 232 -KLRVLEDSRQQ-VQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQ 289
Query: 723 XXXXGKDLKTGIPLHGNLHLVDLAGSER-VDRSEATGDRLKEAQHINKSLSALGDVIFAL 781
L+T LHG LVDLAG+ER D S A E INKSL AL + I AL
Sbjct: 290 IL-----LRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 344
Query: 782 AQKSPHVPYRNSKLTQVLQSS-LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERV 835
Q H P+R SKLTQVL+ S +G ++T M ++P ++S +L+TL++A+RV
Sbjct: 345 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 399
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 142 bits (358), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 151/295 (51%), Gaps = 24/295 (8%)
Query: 547 FKFNKVFGPDATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP-SGPHEE 604
F F+ F A+ V+ T +PL++++ +G FAYGQTGSGKT+TM G SG +
Sbjct: 51 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN 110
Query: 605 -DWGVNYRALNDLFNL-SQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDL 662
G+ A D+F L +Q R ++ EV V EIYN +V DLL
Sbjct: 111 ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA----------- 159
Query: 663 HTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXX 722
L ++ S+ + V + VT +DV++++++G R G T N
Sbjct: 160 -KLRVLEDSRQQ-VQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQ 217
Query: 723 XXXXGKDLKTGIPLHGNLHLVDLAGSER-VDRSEATGDRLKEAQHINKSLSALGDVIFAL 781
L+T LHG LVDLAG+ER D S A E INKSL AL + I AL
Sbjct: 218 IL-----LRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 272
Query: 782 AQKSPHVPYRNSKLTQVLQSS-LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERV 835
Q H P+R SKLTQVL+ S +G ++T M ++P ++S +L+TL++A+RV
Sbjct: 273 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 327
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 146/295 (49%), Gaps = 24/295 (8%)
Query: 547 FKFNKVFGPDATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGP-SGPHEE 604
F F+ F A+ V+ T +PL++++ +G FAYGQTGSGKT+TM G SG +
Sbjct: 103 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQN 162
Query: 605 -DWGVNYRALNDLFNL-SQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDL 662
G+ A D+F L +Q + EV V EIYN ++ DLL
Sbjct: 163 ASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKA----------- 211
Query: 663 HTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXX 722
L ++ + + V H V S +DV++++D+G R G T N
Sbjct: 212 -KLRVLEDGKQQ-VQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQ 269
Query: 723 XXXXGKDLKTGIPLHGNLHLVDLAGSER-VDRSEATGDRLKEAQHINKSLSALGDVIFAL 781
K +HG LVDLAG+ER D S A E INKSL AL + I AL
Sbjct: 270 IILRAKG-----RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL 324
Query: 782 AQKSPHVPYRNSKLTQVLQSS-LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERV 835
Q H P+R SKLTQVL+ S +G ++T M ++P ++S +L+TL++A+RV
Sbjct: 325 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRV 379
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 140/296 (47%), Gaps = 26/296 (8%)
Query: 547 FKFNKVFGPDATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEED 605
F+F+ F A V+ T +PL+ ++ + FAYGQTGSGKT+TM G +D
Sbjct: 141 FRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQD 200
Query: 606 W--GVNYRALNDLF-NLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDV-FWILAICFLD 661
G+ A D+F L + + +V EIY+ +V DLL +L
Sbjct: 201 CSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLRVLEDGKQQ 260
Query: 662 LHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXX 721
+ +G+ V EDVL+L+DIG R G T+ N
Sbjct: 261 VQVVGLQE--------------REVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVF 306
Query: 722 XXXXXGKDLKTGIPLHGNLHLVDLAGSER-VDRSEATGDRLKEAQHINKSLSALGDVIFA 780
L+ LHG L+DLAG+ER D S A E INKSL AL + I A
Sbjct: 307 QII-----LRRKGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRA 361
Query: 781 LAQKSPHVPYRNSKLTQVLQSS-LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERV 835
L + PH P+R SKLTQVL+ S +G ++T M ++P + S +L+TL++A RV
Sbjct: 362 LGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRV 417
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 145/310 (46%), Gaps = 45/310 (14%)
Query: 539 PGKDGQRM------FKFNKVFGPDATQAEVFSD-TQPLIRSVLDGYNVCIFAYGQTGSGK 591
P DG+ + F F+ F +Q E++ PL+ +L+G+ AYGQTG+GK
Sbjct: 49 PWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGK 108
Query: 592 TYTMSGPSGPHE---EDWGVNYRALNDLFN----LSQNRRSSIMYEVAVQMVEIYNEQVR 644
+Y+M G + P E E G+ RAL D+F +N + +I +V +EIYNE+
Sbjct: 109 SYSM-GMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAI--QVYASFIEIYNEKPF 165
Query: 645 DLL--TNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKN 702
DLL T + + A C + P+ S D+ ++++G +N
Sbjct: 166 DLLGSTPHMPMVAARC--------------------QRCTCLPLHSQADLHHILELGTRN 205
Query: 703 RAIGATALNEXXXXXXXXXXXXXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLK 762
R + T +N K H +++VDLAGSE V R+ G +
Sbjct: 206 RRVRPTNMNSNSSRSHAIVTIHVKSKT------HHSRMNIVDLAGSEGVRRTGHEGVARQ 259
Query: 763 EAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSY 822
E +IN L ++ V+ ++A +PYR+S LT VLQ+SL Q+ ++P
Sbjct: 260 EGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDL 319
Query: 823 SESLSTLKFA 832
SE+LSTL+F
Sbjct: 320 SETLSTLRFG 329
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 146/318 (45%), Gaps = 45/318 (14%)
Query: 539 PGKDGQRM------FKFNKVFGPDATQAEVFSD-TQPLIRSVLDGYNVCIFAYGQTGSGK 591
P DG+ + F F+ F +Q E++ PL+ +L+G+ AYGQTG+GK
Sbjct: 49 PWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGK 108
Query: 592 TYTMSGPSGPHE---EDWGVNYRALNDLFN----LSQNRRSSIMYEVAVQMVEIYNEQVR 644
+Y+M G + P E E G+ RAL D+F +N + +I +V +EIYNE+
Sbjct: 109 SYSM-GMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAI--QVYASFIEIYNEKPF 165
Query: 645 DLL--TNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKN 702
DLL T + + A C + P+ S D+ ++++G +N
Sbjct: 166 DLLGSTPHMPMVAARC--------------------QRCTCLPLHSQADLHHILELGTRN 205
Query: 703 RAIGATALNEXXXXXXXXXXXXXXGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLK 762
R + T +N K H +++VDLAGSE V R+ G +
Sbjct: 206 RRVRPTNMNSNSSRSHAIVTIHVKSKT------HHSRMNIVDLAGSEGVRRTGHEGVARQ 259
Query: 763 EAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSY 822
E +IN L ++ V+ ++A +PYR+S LT VLQ+SL Q+ ++P
Sbjct: 260 EGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDL 319
Query: 823 SESLSTLKFAERVSGVEL 840
SE+LSTL+F L
Sbjct: 320 SETLSTLRFGTSAKAAAL 337
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 156/346 (45%), Gaps = 31/346 (8%)
Query: 502 IRVYCRIRPFLPGQTKKQTT-IEYIGENGELIFGNPSKPGKDGQRM----FKFNKVFGPD 556
I+V R RP + KK+ + I + N L P + + F +KVF
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 557 ATQAEVFSDT-QPLIRSVLDGYNVC-IFAYGQTGSGKTYTMSGPSGPHEEDW-GVNYRAL 613
V+ +T +PLI + + VC FAYGQTGSGKTYTM G + D G+ A
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 614 NDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQP 673
D+F + + EIY ++ DLL M +
Sbjct: 122 GDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK----------------MVAALE 165
Query: 674 NG---LAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXXGKDL 730
NG + V D + V + E+++ M G+ R IG + N+ KD+
Sbjct: 166 NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDL--KDI 223
Query: 731 KTGIPLHGNLHLVDLAGSER-VDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVP 789
L G + +DLAGSER D + +IN+SL AL + I A+ H+P
Sbjct: 224 NKNTSL-GKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIP 282
Query: 790 YRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERV 835
+R+S+LT+VL+ G++K++M ++P ++ ++L+TL+++ RV
Sbjct: 283 FRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRV 328
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 129/265 (48%), Gaps = 47/265 (17%)
Query: 501 NIRVYCRIRP-----------FLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKF 549
+I+V CR RP F+P ++T + IG+ G P + F
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVV--IGQ------GKP----------YVF 48
Query: 550 NKVFGPDATQAEVFSD-TQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEED-WG 607
++V P+ TQ +V++ + +++ VL+GYN IFAYGQT SGKT+TM G H+ G
Sbjct: 49 DRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKL--HDPQLMG 106
Query: 608 VNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGI 667
+ R +D+F+ + ++ + + V EIY +++RDL LD+ +
Sbjct: 107 IIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDL-------------LDVSKTNL 153
Query: 668 MSTSQPNGLA-VPDASMHPVTSTEDVLELMDIGLKNRAIGATALNEXXXXXXXXXXXXXX 726
N + V + V+S E+V++++D G NR + T +NE
Sbjct: 154 AVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIK 213
Query: 727 GKDLKTGIPLHGNLHLVDLAGSERV 751
++++T L G L+LVDLAGSE+V
Sbjct: 214 QENVETEKKLSGKLYLVDLAGSEKV 238
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 764 AQHINKSLSALGDVIFALAQKS-PHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSY 822
A++INKSLSALG+VI ALA+ + HVPYR+SK+T++LQ SL G +T + + +P V +
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 823 SESLSTLKFAERVSGVE 839
+E+ STL F +R ++
Sbjct: 61 AETKSTLMFGQRAKTIK 77
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 768 NKSLSALGDVIFALAQKS-PHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESL 826
NKSLSALG+VI ALA+ + HVPYR+SK+T++LQ SLGG +T + + +P V + +E+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 827 STLKFAERVSGVE 839
STL F +R ++
Sbjct: 61 STLMFGQRAKTIK 73
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 53 ELRACLIDGTVLCQILKRLKPASVDEANYSYNS--SMSRSGKIARFLTTLGKLGISRFEM 110
+ + L DGT+LC ++ +L+P SV + N S + + + + + G + FE
Sbjct: 37 DFQKGLKDGTILCTLMNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEA 96
Query: 111 SDL-EKGSMKPVINCLLNLRAEYITGG 136
+DL E G+M V LL L + T G
Sbjct: 97 NDLFESGNMTQVQVSLLALAGKAKTKG 123
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 12 SAFESSVNINSEVEAKQRALLIEWLNS-ILPNLNFPIKASDEELRACLIDGTVLCQILKR 70
S+ S I + +A +LI+W+ + ++ P + E + L DGTVLC+++
Sbjct: 2 SSGSSGQKIEKQYDADLEQILIQWITTQCRKDVGRP-QPGRENFQNWLKDGTVLCELINA 60
Query: 71 LKPASVDEANYSYNSSMS--RSGKIARFLTTLGKLGISR---FEMSDLEKG-SMKPVINC 124
L P S+M+ + +I++FL + GI+ F+ DL +G +M V
Sbjct: 61 LYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRT 120
Query: 125 LLNL 128
L+NL
Sbjct: 121 LMNL 124
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 36.6 bits (83), Expect = 0.069, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 32 LIEWLNS--ILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSR 89
++ WL S +L + I +E L++ L +G VLC+++ RL P SV++ +
Sbjct: 11 IVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADC 70
Query: 90 SGKIARFLTTLGKLGISRFEMSDLEKG-SMKPVINCLL 126
I FL L + F+ DL G + V++ LL
Sbjct: 71 INNINDFLKGCATLQVEIFDPDDLYSGVNFSKVLSTLL 108
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 33 IEWLNSILPNLNFPIKA-SDEE--LRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSR 89
+ WL + L L P K SD E L+A L DG VLC++L+RL P ++++ S
Sbjct: 18 VTWLIT-LGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESEC 76
Query: 90 SGKIARFLTTLG-KLGISRFEMSDLEKG 116
I FL G L + F+ +DL +G
Sbjct: 77 LSNIREFLRGCGASLRLETFDANDLYQG 104
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 58 LIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISR---FEMSDL- 113
L DG +LC+ + +L+P SV + N S + + I F+ + K G+ FE +DL
Sbjct: 42 LKDGIILCEFINKLQPGSVKKINES-TQNWHQLENIGNFIKAITKYGVKPHDIFEANDLF 100
Query: 114 EKGSMKPVINCLLNLRAEYITGGD 137
E + V + LL L + T G+
Sbjct: 101 ENTNHTQVQSTLLALASMAKTKGN 124
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 58 LIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISR---FEMSDL 113
L DG +LC+++ +L+P SV + N + + I FL + G+ FE +DL
Sbjct: 28 LKDGVILCELINKLQPGSVQKVNDPV-QNWHKLENIGNFLRAIKHYGVKPHDIFEANDL 85
>pdb|2EFR|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|B Chain B, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|C Chain C, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|D Chain D, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFS|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|B Chain B, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|C Chain C, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|D Chain D, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
Length = 155
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 11/112 (9%)
Query: 395 ELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEIS 454
ELE L+ N ++ LEA + +++S+KE Y+ + + L+E ++ ++ ++
Sbjct: 46 ELEEELKTVTNNLKSLEAQA----EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 101
Query: 455 KAQKS---HADDLYCLGVRLKALAGA----AENYHAVLAENRRLFNEVQDLK 499
K +KS D+LY ++ KA++ + +L++N L NEV LK
Sbjct: 102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,934,604
Number of Sequences: 62578
Number of extensions: 948644
Number of successful extensions: 2726
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2447
Number of HSP's gapped (non-prelim): 90
length of query: 899
length of database: 14,973,337
effective HSP length: 108
effective length of query: 791
effective length of database: 8,214,913
effective search space: 6497996183
effective search space used: 6497996183
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)