Query 042277
Match_columns 899
No_of_seqs 548 out of 2595
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:40:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 5E-100 1E-104 899.1 46.7 596 229-866 69-668 (670)
2 KOG4280 Kinesin-like protein [ 100.0 4.5E-86 9.7E-91 757.1 28.0 357 499-869 4-368 (574)
3 KOG0243 Kinesin-like protein [ 100.0 3.8E-83 8.3E-88 759.0 30.5 361 500-867 49-421 (1041)
4 KOG0245 Kinesin-like protein [ 100.0 3.3E-82 7.1E-87 736.8 24.2 352 500-867 4-378 (1221)
5 PLN03188 kinesin-12 family pro 100.0 6E-80 1.3E-84 737.2 38.8 357 488-867 82-463 (1320)
6 cd01370 KISc_KIP3_like Kinesin 100.0 9.5E-79 2.1E-83 676.7 35.0 320 501-838 1-338 (338)
7 cd01373 KISc_KLP2_like Kinesin 100.0 3.3E-78 7.2E-83 672.1 35.8 320 500-838 1-337 (337)
8 KOG0240 Kinesin (SMY1 subfamil 100.0 4.5E-79 9.7E-84 682.2 27.5 328 499-844 6-337 (607)
9 KOG0242 Kinesin-like protein [ 100.0 3.3E-77 7.2E-82 707.4 28.6 351 500-868 6-363 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 8.1E-76 1.8E-80 654.8 35.0 319 501-836 2-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 5.1E-75 1.1E-79 651.2 37.2 330 500-844 1-355 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 7.2E-75 1.6E-79 641.7 34.8 315 500-836 1-322 (322)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 4E-74 8.7E-79 638.5 36.9 326 500-838 1-333 (333)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 5.6E-74 1.2E-78 641.9 37.4 334 500-845 2-350 (352)
15 cd01376 KISc_KID_like Kinesin 100.0 6.2E-74 1.3E-78 633.6 36.0 314 501-836 1-319 (319)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.1E-73 2.5E-78 632.9 37.5 320 500-838 2-325 (325)
17 cd01366 KISc_C_terminal Kinesi 100.0 4.1E-73 8.9E-78 629.4 37.7 326 499-841 1-329 (329)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 2.3E-73 5.1E-78 629.5 35.5 315 501-838 1-321 (321)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 3.4E-73 7.4E-78 632.9 36.3 322 501-839 2-341 (341)
20 KOG0241 Kinesin-like protein [ 100.0 8.5E-74 1.9E-78 653.6 27.3 354 499-868 3-382 (1714)
21 cd01375 KISc_KIF9_like Kinesin 100.0 1.3E-72 2.8E-77 626.6 35.8 324 501-836 1-334 (334)
22 cd00106 KISc Kinesin motor dom 100.0 1.1E-68 2.4E-73 593.0 37.7 322 501-836 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 1.6E-68 3.5E-73 593.8 36.8 326 501-844 1-334 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 1.5E-68 3.2E-73 593.7 24.5 322 507-838 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 7.3E-65 1.6E-69 579.6 26.0 333 497-841 28-439 (809)
26 KOG0246 Kinesin-like protein [ 100.0 1.8E-63 3.9E-68 554.6 29.4 324 500-841 208-544 (676)
27 KOG0244 Kinesin-like protein [ 100.0 3.7E-64 8E-69 589.1 10.4 343 508-870 1-350 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.2E-59 4.7E-64 550.5 30.8 307 544-866 55-366 (568)
29 cd01363 Motor_domain Myosin an 100.0 6.7E-50 1.5E-54 409.9 19.3 176 562-817 8-186 (186)
30 KOG2046 Calponin [Cytoskeleton 99.9 2.9E-24 6.4E-29 216.3 9.6 106 26-136 24-133 (193)
31 COG5199 SCP1 Calponin [Cytoske 99.7 1.1E-16 2.3E-21 153.9 8.3 104 26-135 12-119 (178)
32 cd00014 CH Calponin homology d 99.6 1.2E-15 2.6E-20 141.7 8.6 102 28-132 2-106 (107)
33 smart00033 CH Calponin homolog 99.5 6.7E-14 1.4E-18 128.7 6.2 97 29-128 2-103 (103)
34 COG5261 IQG1 Protein involved 99.4 2.9E-13 6.4E-18 158.3 7.8 105 29-138 46-154 (1054)
35 KOG2128 Ras GTPase-activating 99.4 8.8E-13 1.9E-17 161.9 10.6 119 20-143 23-157 (1401)
36 PF00307 CH: Calponin homology 99.3 2E-12 4.3E-17 120.1 6.9 103 29-133 1-108 (108)
37 COG5059 KIP1 Kinesin-like prot 99.0 2.5E-12 5.5E-17 152.8 -10.5 297 460-782 263-566 (568)
38 KOG0532 Leucine-rich repeat (L 99.0 4.4E-10 9.4E-15 129.0 7.4 104 23-132 572-686 (722)
39 KOG2996 Rho guanine nucleotide 98.9 1.8E-09 3.9E-14 122.7 7.3 98 31-131 6-118 (865)
40 KOG0046 Ca2+-binding actin-bun 97.5 0.00011 2.4E-09 84.4 6.0 96 24-119 116-221 (627)
41 PF00038 Filament: Intermediat 97.2 0.42 9.2E-06 53.2 29.1 34 350-383 119-152 (312)
42 PF11971 CAMSAP_CH: CAMSAP CH 96.8 0.0014 3E-08 59.6 4.3 68 46-113 8-81 (85)
43 PF06395 CDC24: CDC24 Calponin 96.6 0.0046 9.9E-08 56.5 6.0 77 52-128 4-88 (89)
44 PF12128 DUF3584: Protein of u 96.4 1.7 3.7E-05 57.4 29.9 123 356-479 733-865 (1201)
45 TIGR02169 SMC_prok_A chromosom 96.3 1.6 3.5E-05 56.8 29.1 13 684-696 624-636 (1164)
46 COG1196 Smc Chromosome segrega 96.2 2.2 4.7E-05 56.2 29.2 35 220-257 123-157 (1163)
47 KOG0977 Nuclear envelope prote 96.1 0.96 2.1E-05 54.0 23.1 28 353-380 202-229 (546)
48 KOG0250 DNA repair protein RAD 96.1 1.8 3.9E-05 54.9 26.0 17 683-699 599-615 (1074)
49 PHA02562 46 endonuclease subun 96.0 0.66 1.4E-05 55.8 22.1 28 431-458 345-372 (562)
50 PF07888 CALCOCO1: Calcium bin 95.9 4.1 8.8E-05 48.9 27.1 56 438-496 347-402 (546)
51 COG1196 Smc Chromosome segrega 95.9 3.5 7.6E-05 54.4 29.4 61 769-842 1072-1145(1163)
52 COG4372 Uncharacterized protei 95.9 4.3 9.2E-05 46.2 32.3 38 431-468 253-290 (499)
53 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 0.97 2.1E-05 44.4 18.4 60 436-498 72-131 (132)
54 TIGR02169 SMC_prok_A chromosom 95.8 4.4 9.5E-05 52.8 29.8 6 30-35 40-45 (1164)
55 KOG0996 Structural maintenance 95.8 2.2 4.7E-05 54.4 24.8 23 847-869 855-877 (1293)
56 KOG0161 Myosin class II heavy 95.7 3.3 7.1E-05 56.3 27.6 44 265-308 983-1029(1930)
57 KOG1029 Endocytic adaptor prot 95.7 2 4.4E-05 52.4 23.1 23 740-762 958-980 (1118)
58 KOG1029 Endocytic adaptor prot 95.6 2 4.4E-05 52.4 22.7 13 265-277 332-344 (1118)
59 KOG0161 Myosin class II heavy 95.6 2.1 4.5E-05 58.0 25.2 59 354-412 1349-1407(1930)
60 KOG0971 Microtubule-associated 95.5 3.8 8.3E-05 50.9 24.9 131 339-476 394-546 (1243)
61 PF05667 DUF812: Protein of un 95.5 7.6 0.00016 47.5 28.0 43 341-383 394-436 (594)
62 KOG4593 Mitotic checkpoint pro 95.5 8 0.00017 47.2 27.3 152 345-496 144-316 (716)
63 PF09726 Macoilin: Transmembra 95.5 3.8 8.2E-05 51.0 25.6 87 389-479 543-636 (697)
64 TIGR02168 SMC_prok_B chromosom 95.4 7.9 0.00017 50.4 29.9 12 829-840 1155-1166(1179)
65 KOG0971 Microtubule-associated 95.2 4.5 9.8E-05 50.3 24.0 46 50-101 27-72 (1243)
66 PRK03918 chromosome segregatio 95.1 14 0.0003 47.0 31.0 36 236-278 145-180 (880)
67 KOG0996 Structural maintenance 95.1 5.8 0.00013 50.8 25.4 38 94-131 92-134 (1293)
68 TIGR00606 rad50 rad50. This fa 95.0 5.3 0.00011 53.4 26.9 69 428-496 893-961 (1311)
69 KOG1103 Predicted coiled-coil 94.8 1.9 4E-05 48.2 18.0 37 438-474 246-285 (561)
70 PRK02224 chromosome segregatio 94.7 13 0.00028 47.5 28.4 15 28-42 110-124 (880)
71 PRK11637 AmiB activator; Provi 94.6 8.7 0.00019 45.0 24.5 13 715-727 405-417 (428)
72 PF15070 GOLGA2L5: Putative go 94.6 13 0.00029 45.7 26.5 25 282-306 33-57 (617)
73 KOG2129 Uncharacterized conser 94.6 11 0.00024 43.4 24.4 30 438-467 254-283 (552)
74 KOG1937 Uncharacterized conser 94.6 7.1 0.00015 45.4 22.4 94 320-413 272-367 (521)
75 PRK02224 chromosome segregatio 94.5 9.2 0.0002 48.8 26.4 17 200-216 127-143 (880)
76 PF10212 TTKRSYEDQ: Predicted 94.4 7.3 0.00016 46.4 22.6 98 379-480 408-505 (518)
77 PRK11637 AmiB activator; Provi 94.2 10 0.00022 44.4 24.0 29 343-371 98-126 (428)
78 KOG0977 Nuclear envelope prote 94.2 7.5 0.00016 46.7 22.6 29 348-376 106-134 (546)
79 KOG0976 Rho/Rac1-interacting s 94.2 7.5 0.00016 47.9 22.4 23 388-410 131-153 (1265)
80 PF07111 HCR: Alpha helical co 94.2 5.2 0.00011 48.8 21.2 50 358-407 136-185 (739)
81 KOG4673 Transcription factor T 94.1 19 0.0004 44.0 25.3 29 405-433 644-672 (961)
82 PF12128 DUF3584: Protein of u 94.0 4.9 0.00011 53.2 22.9 44 419-465 721-764 (1201)
83 PF15397 DUF4618: Domain of un 94.0 12 0.00025 41.1 23.6 29 340-368 80-108 (258)
84 PLN03188 kinesin-12 family pro 94.0 13 0.00029 48.4 25.1 59 442-500 1160-1239(1320)
85 COG5185 HEC1 Protein involved 93.9 17 0.00037 42.6 26.2 24 265-288 258-281 (622)
86 KOG0994 Extracellular matrix g 93.8 17 0.00036 46.8 24.8 25 300-324 1543-1567(1758)
87 KOG0995 Centromere-associated 93.8 20 0.00043 43.1 27.7 37 438-474 468-504 (581)
88 TIGR00606 rad50 rad50. This fa 93.8 10 0.00022 50.8 25.3 22 389-410 886-907 (1311)
89 PF14988 DUF4515: Domain of un 93.7 8.7 0.00019 40.8 19.9 64 350-413 13-76 (206)
90 KOG0964 Structural maintenance 93.7 27 0.00059 44.4 26.2 17 263-279 187-203 (1200)
91 KOG0933 Structural maintenance 93.6 7 0.00015 49.4 21.2 145 306-455 660-805 (1174)
92 KOG4674 Uncharacterized conser 93.5 31 0.00067 46.9 27.9 50 439-488 1027-1076(1822)
93 KOG0963 Transcription factor/C 93.4 12 0.00026 45.2 22.1 15 485-499 382-396 (629)
94 KOG0933 Structural maintenance 93.3 22 0.00048 45.3 24.6 76 341-416 734-812 (1174)
95 KOG0976 Rho/Rac1-interacting s 93.2 25 0.00055 43.6 24.4 16 23-38 37-52 (1265)
96 KOG4673 Transcription factor T 93.1 26 0.00055 42.9 24.0 20 256-275 406-425 (961)
97 PRK04863 mukB cell division pr 93.0 19 0.00041 48.7 25.5 27 220-247 196-222 (1486)
98 PF09726 Macoilin: Transmembra 92.8 16 0.00034 45.7 23.1 10 493-502 643-652 (697)
99 COG0556 UvrB Helicase subunit 92.8 0.13 2.9E-06 60.4 5.0 94 546-644 4-101 (663)
100 PF00308 Bac_DnaA: Bacterial d 92.7 0.037 8E-07 58.8 0.4 50 546-597 4-53 (219)
101 PF08317 Spc7: Spc7 kinetochor 92.7 11 0.00024 42.6 20.2 15 232-246 50-64 (325)
102 PF05667 DUF812: Protein of un 92.7 15 0.00032 45.0 22.3 20 482-501 508-527 (594)
103 KOG4674 Uncharacterized conser 92.5 25 0.00054 47.7 25.1 52 454-505 436-487 (1822)
104 KOG0999 Microtubule-associated 92.5 12 0.00026 44.5 19.8 162 346-511 48-226 (772)
105 PF10498 IFT57: Intra-flagella 92.3 13 0.00028 42.9 20.0 44 92-135 72-116 (359)
106 PHA02562 46 endonuclease subun 92.2 32 0.0007 41.4 26.1 15 202-216 130-144 (562)
107 PRK03918 chromosome segregatio 92.2 43 0.00094 42.7 29.1 36 794-839 832-867 (880)
108 PF10481 CENP-F_N: Cenp-F N-te 92.0 3.7 7.9E-05 44.8 14.1 135 340-499 24-189 (307)
109 PF12718 Tropomyosin_1: Tropom 91.9 15 0.00032 36.9 17.7 68 340-412 34-101 (143)
110 PF10168 Nup88: Nuclear pore c 91.9 12 0.00026 46.9 20.6 100 341-455 565-664 (717)
111 KOG0612 Rho-associated, coiled 91.8 13 0.00027 48.2 20.4 17 52-68 217-236 (1317)
112 PRK09039 hypothetical protein; 91.7 14 0.00031 42.2 19.5 33 237-278 25-57 (343)
113 PF05010 TACC: Transforming ac 91.6 21 0.00046 38.0 19.4 85 370-468 122-206 (207)
114 COG1579 Zn-ribbon protein, pos 91.5 8.4 0.00018 41.8 16.3 51 263-313 31-87 (239)
115 PRK04778 septation ring format 91.2 43 0.00094 40.9 25.2 33 340-372 309-341 (569)
116 KOG0243 Kinesin-like protein [ 91.2 52 0.0011 42.5 24.9 33 338-370 480-512 (1041)
117 PF10168 Nup88: Nuclear pore c 90.6 10 0.00023 47.4 18.4 8 108-115 342-349 (717)
118 PF10174 Cast: RIM-binding pro 90.5 30 0.00065 43.7 22.1 61 437-504 664-724 (775)
119 PRK06620 hypothetical protein; 90.3 0.12 2.5E-06 54.9 1.1 50 545-597 11-63 (214)
120 PF14662 CCDC155: Coiled-coil 90.2 26 0.00057 36.7 20.9 26 388-413 120-145 (193)
121 KOG0994 Extracellular matrix g 90.2 71 0.0015 41.5 25.9 26 232-257 1488-1513(1758)
122 PRK06893 DNA replication initi 90.1 0.17 3.8E-06 54.0 2.2 48 545-597 11-58 (229)
123 PF05701 WEMBL: Weak chloropla 89.9 53 0.0011 39.7 25.8 13 233-245 2-14 (522)
124 PRK10361 DNA recombination pro 89.8 51 0.0011 39.4 22.6 37 440-476 143-179 (475)
125 KOG0018 Structural maintenance 89.8 35 0.00076 43.8 21.6 30 269-298 271-300 (1141)
126 COG2805 PilT Tfp pilus assembl 89.8 0.16 3.5E-06 56.2 1.7 30 567-596 114-143 (353)
127 PF08317 Spc7: Spc7 kinetochor 89.8 40 0.00088 38.1 29.4 15 312-326 114-128 (325)
128 KOG0046 Ca2+-binding actin-bun 89.5 0.82 1.8E-05 53.6 7.1 80 32-117 393-479 (627)
129 PF05911 DUF869: Plant protein 89.3 9.2 0.0002 48.0 16.4 71 342-413 618-688 (769)
130 PF09755 DUF2046: Uncharacteri 89.0 44 0.00096 37.6 23.5 121 343-467 137-259 (310)
131 KOG0240 Kinesin (SMY1 subfamil 89.0 62 0.0013 39.2 22.8 38 255-292 329-366 (607)
132 PRK14086 dnaA chromosomal repl 88.7 0.21 4.6E-06 60.6 1.8 52 544-597 282-333 (617)
133 PRK01156 chromosome segregatio 88.5 87 0.0019 40.3 28.4 43 469-512 416-458 (895)
134 KOG1853 LIS1-interacting prote 88.4 42 0.0009 36.6 18.9 19 352-370 63-81 (333)
135 PRK08084 DNA replication initi 88.4 0.24 5.2E-06 53.2 1.8 47 546-597 18-64 (235)
136 PRK12377 putative replication 88.4 0.23 5E-06 54.0 1.7 49 548-597 72-120 (248)
137 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.3 27 0.00059 34.3 16.6 19 436-454 86-104 (132)
138 KOG0239 Kinesin (KAR3 subfamil 88.1 0.35 7.6E-06 59.5 3.1 89 544-651 25-113 (670)
139 PF06818 Fez1: Fez1; InterPro 88.0 40 0.00086 35.8 19.0 18 479-496 184-201 (202)
140 PF09730 BicD: Microtubule-ass 88.0 28 0.00061 43.4 19.1 30 849-878 582-611 (717)
141 PF05483 SCP-1: Synaptonemal c 87.8 79 0.0017 39.0 28.5 44 341-384 527-570 (786)
142 COG2804 PulE Type II secretory 87.8 0.27 5.9E-06 57.9 1.8 32 566-597 246-277 (500)
143 PRK03992 proteasome-activating 87.7 0.33 7.1E-06 56.1 2.5 18 578-595 165-182 (389)
144 KOG0804 Cytoplasmic Zn-finger 87.6 6.8 0.00015 45.5 12.6 62 342-407 390-451 (493)
145 PF14988 DUF4515: Domain of un 87.4 43 0.00094 35.6 23.7 58 341-398 71-128 (206)
146 PF09730 BicD: Microtubule-ass 87.3 25 0.00054 43.9 18.1 50 434-483 363-412 (717)
147 KOG0964 Structural maintenance 87.1 22 0.00048 45.0 17.2 13 715-727 634-646 (1200)
148 PRK04863 mukB cell division pr 87.0 1.4E+02 0.003 40.9 27.7 39 426-464 445-483 (1486)
149 KOG1853 LIS1-interacting prote 86.8 38 0.00082 36.8 16.7 19 269-287 43-61 (333)
150 PRK05642 DNA replication initi 86.8 0.36 7.8E-06 51.8 2.0 49 546-597 15-64 (234)
151 KOG0612 Rho-associated, coiled 86.7 1.2E+02 0.0026 39.9 29.3 13 263-275 465-477 (1317)
152 PF10473 CENP-F_leu_zip: Leuci 86.5 38 0.00081 34.0 16.6 31 392-422 81-111 (140)
153 PRK09039 hypothetical protein; 86.5 67 0.0014 36.8 20.5 44 431-474 138-184 (343)
154 PRK08116 hypothetical protein; 86.4 0.4 8.7E-06 52.6 2.1 51 546-597 81-133 (268)
155 PRK14088 dnaA chromosomal repl 86.1 0.3 6.6E-06 57.3 1.1 51 544-597 99-149 (440)
156 KOG4809 Rab6 GTPase-interactin 86.0 87 0.0019 37.7 21.5 22 262-283 245-266 (654)
157 PRK07952 DNA replication prote 86.0 0.41 8.8E-06 52.0 1.9 50 547-597 69-118 (244)
158 COG5185 HEC1 Protein involved 86.0 29 0.00063 40.8 16.3 101 345-454 261-361 (622)
159 KOG0995 Centromere-associated 85.8 91 0.002 37.8 25.1 21 121-141 72-92 (581)
160 KOG0250 DNA repair protein RAD 85.7 1.3E+02 0.0027 39.3 26.2 38 436-477 393-430 (1074)
161 TIGR00362 DnaA chromosomal rep 85.4 0.37 8E-06 55.8 1.3 52 544-597 104-155 (405)
162 PF10174 Cast: RIM-binding pro 85.2 1.2E+02 0.0026 38.6 26.8 13 25-37 44-56 (775)
163 PRK01156 chromosome segregatio 85.2 1.3E+02 0.0027 38.8 27.2 9 238-246 151-159 (895)
164 PRK06835 DNA replication prote 85.1 0.36 7.9E-06 54.6 1.0 37 560-597 166-202 (329)
165 PF06785 UPF0242: Uncharacteri 85.0 11 0.00024 42.2 12.2 82 231-327 66-155 (401)
166 KOG0804 Cytoplasmic Zn-finger 84.9 31 0.00067 40.4 16.0 28 266-297 260-287 (493)
167 TIGR03420 DnaA_homol_Hda DnaA 84.7 0.64 1.4E-05 48.7 2.6 47 545-596 10-56 (226)
168 KOG0946 ER-Golgi vesicle-tethe 84.7 1.2E+02 0.0026 38.2 21.7 50 274-323 667-716 (970)
169 PF12325 TMF_TATA_bd: TATA ele 84.5 16 0.00034 35.7 11.7 34 340-373 50-86 (120)
170 TIGR01242 26Sp45 26S proteasom 84.5 0.78 1.7E-05 52.4 3.3 19 578-596 156-174 (364)
171 PRK00149 dnaA chromosomal repl 84.5 0.42 9E-06 56.2 1.2 52 544-597 116-167 (450)
172 PF13851 GAS: Growth-arrest sp 84.4 59 0.0013 34.4 18.8 72 341-412 100-171 (201)
173 PRK14087 dnaA chromosomal repl 84.3 0.44 9.5E-06 56.2 1.3 50 546-597 111-160 (450)
174 PRK08903 DnaA regulatory inact 84.3 0.66 1.4E-05 49.0 2.5 49 545-597 13-61 (227)
175 PRK09087 hypothetical protein; 84.3 0.56 1.2E-05 50.2 1.9 48 545-597 16-63 (226)
176 KOG4643 Uncharacterized coiled 83.7 1.5E+02 0.0032 38.4 25.0 20 313-332 315-334 (1195)
177 KOG0962 DNA repair protein RAD 83.3 1.7E+02 0.0037 38.9 27.4 46 264-309 834-879 (1294)
178 PTZ00454 26S protease regulato 83.2 5.4 0.00012 46.5 9.5 50 546-595 141-196 (398)
179 PF09789 DUF2353: Uncharacteri 83.0 91 0.002 35.4 18.9 47 452-498 158-208 (319)
180 PF10186 Atg14: UV radiation r 82.7 78 0.0017 34.6 18.0 10 488-497 146-155 (302)
181 smart00787 Spc7 Spc7 kinetocho 82.7 92 0.002 35.3 21.8 11 490-500 278-288 (312)
182 COG1484 DnaC DNA replication p 82.6 0.79 1.7E-05 50.0 2.3 49 547-597 76-124 (254)
183 TIGR02928 orc1/cdc6 family rep 82.6 0.73 1.6E-05 52.1 2.1 38 559-596 20-58 (365)
184 PF09787 Golgin_A5: Golgin sub 82.4 1.2E+02 0.0027 36.5 23.4 11 465-475 388-398 (511)
185 TIGR01843 type_I_hlyD type I s 82.3 33 0.00071 39.4 15.6 25 432-456 248-272 (423)
186 PF15035 Rootletin: Ciliary ro 82.1 69 0.0015 33.5 18.8 56 415-470 119-174 (182)
187 PRK10865 protein disaggregatio 82.1 47 0.001 42.7 18.0 43 549-595 567-615 (857)
188 COG5069 SAC6 Ca2+-binding acti 82.0 2.2 4.8E-05 49.7 5.6 108 17-128 115-232 (612)
189 PF14662 CCDC155: Coiled-coil 82.0 72 0.0016 33.6 20.7 18 469-486 158-175 (193)
190 TIGR03545 conserved hypothetic 81.9 33 0.00072 41.8 15.7 31 792-822 472-502 (555)
191 KOG0963 Transcription factor/C 81.7 1.4E+02 0.003 36.7 26.7 129 362-495 217-349 (629)
192 PF09744 Jnk-SapK_ap_N: JNK_SA 81.6 66 0.0014 32.9 18.9 41 367-407 72-112 (158)
193 PF00261 Tropomyosin: Tropomyo 81.5 83 0.0018 34.0 26.1 24 389-412 139-162 (237)
194 KOG0978 E3 ubiquitin ligase in 81.3 1.6E+02 0.0034 37.0 25.5 24 342-365 483-506 (698)
195 PRK08727 hypothetical protein; 81.0 0.89 1.9E-05 48.7 2.0 45 546-597 15-60 (233)
196 COG0593 DnaA ATPase involved i 80.7 0.69 1.5E-05 53.7 1.0 51 545-597 82-132 (408)
197 KOG4603 TBP-1 interacting prot 80.6 25 0.00054 36.1 11.7 21 477-497 160-180 (201)
198 COG4372 Uncharacterized protei 80.5 1.2E+02 0.0026 35.1 24.8 22 576-600 391-412 (499)
199 COG3883 Uncharacterized protei 80.3 1E+02 0.0022 34.2 20.4 43 336-378 68-110 (265)
200 COG4942 Membrane-bound metallo 80.2 1.3E+02 0.0028 35.4 23.9 27 428-454 215-241 (420)
201 PF12325 TMF_TATA_bd: TATA ele 80.0 62 0.0014 31.6 14.3 25 341-365 37-61 (120)
202 PF09731 Mitofilin: Mitochondr 79.9 1.5E+02 0.0033 36.1 21.9 52 449-500 365-419 (582)
203 PF15066 CAGE1: Cancer-associa 79.8 1.4E+02 0.003 35.4 20.7 71 328-402 367-440 (527)
204 COG1474 CDC6 Cdc6-related prot 79.7 1.1 2.4E-05 51.5 2.3 30 566-595 29-59 (366)
205 PRK00411 cdc6 cell division co 79.5 1.2 2.6E-05 50.9 2.6 36 560-595 36-72 (394)
206 PF10212 TTKRSYEDQ: Predicted 79.2 38 0.00082 40.6 14.5 50 348-397 462-511 (518)
207 PRK06526 transposase; Provisio 79.1 0.69 1.5E-05 50.5 0.4 21 575-597 97-117 (254)
208 TIGR01005 eps_transp_fam exopo 79.0 1.9E+02 0.0041 36.5 26.6 21 576-596 545-565 (754)
209 KOG1899 LAR transmembrane tyro 78.9 33 0.00072 41.6 13.7 15 608-622 487-501 (861)
210 PRK08939 primosomal protein Dn 78.9 0.87 1.9E-05 51.1 1.1 51 547-597 124-175 (306)
211 PRK08181 transposase; Validate 78.6 1.1 2.3E-05 49.4 1.7 21 575-597 105-125 (269)
212 PRK12704 phosphodiesterase; Pr 78.5 80 0.0017 38.3 17.4 14 487-500 190-203 (520)
213 KOG0946 ER-Golgi vesicle-tethe 78.3 2E+02 0.0043 36.4 20.8 11 123-133 389-399 (970)
214 PTZ00112 origin recognition co 78.0 0.75 1.6E-05 57.7 0.2 33 564-596 765-799 (1164)
215 cd00009 AAA The AAA+ (ATPases 77.7 1.3 2.8E-05 41.5 1.7 25 571-595 12-36 (151)
216 TIGR03007 pepcterm_ChnLen poly 77.6 1.6E+02 0.0035 35.0 25.6 6 500-505 394-399 (498)
217 cd00046 DEXDc DEAD-like helica 77.4 0.8 1.7E-05 42.5 0.2 17 581-597 3-19 (144)
218 PF13851 GAS: Growth-arrest sp 77.4 1E+02 0.0022 32.6 22.9 55 317-371 21-78 (201)
219 PF06160 EzrA: Septation ring 77.4 1.7E+02 0.0036 35.9 19.9 35 341-375 306-340 (560)
220 PRK10884 SH3 domain-containing 77.2 21 0.00045 38.0 10.7 17 356-372 101-117 (206)
221 PLN02939 transferase, transfer 77.2 45 0.00098 43.0 15.3 25 342-366 157-181 (977)
222 PF04849 HAP1_N: HAP1 N-termin 77.2 1.3E+02 0.0029 33.9 17.9 24 388-411 164-187 (306)
223 PF13870 DUF4201: Domain of un 77.0 93 0.002 31.9 20.4 81 278-368 6-90 (177)
224 PF06818 Fez1: Fez1; InterPro 77.0 1.1E+02 0.0023 32.6 17.8 17 352-368 28-44 (202)
225 PF04851 ResIII: Type III rest 77.0 1.2 2.5E-05 44.3 1.3 29 569-597 15-44 (184)
226 smart00787 Spc7 Spc7 kinetocho 76.6 1.4E+02 0.0031 33.8 28.0 32 236-277 49-80 (312)
227 PF15397 DUF4618: Domain of un 76.5 1.3E+02 0.0028 33.3 22.6 87 357-454 65-155 (258)
228 PF11932 DUF3450: Protein of u 76.5 1E+02 0.0022 33.5 16.2 14 492-505 158-171 (251)
229 PF15272 BBP1_C: Spindle pole 76.4 1.1E+02 0.0024 32.4 18.3 48 342-389 6-53 (196)
230 PF13401 AAA_22: AAA domain; P 76.3 0.74 1.6E-05 43.6 -0.3 18 578-595 4-21 (131)
231 COG1842 PspA Phage shock prote 76.2 1.2E+02 0.0026 32.8 18.5 20 234-253 3-22 (225)
232 PF13245 AAA_19: Part of AAA d 75.7 1.2 2.6E-05 39.6 0.9 27 570-597 3-29 (76)
233 PRK00106 hypothetical protein; 75.7 1.6E+02 0.0035 35.8 18.8 143 346-497 37-180 (535)
234 PF00038 Filament: Intermediat 75.7 1.4E+02 0.003 33.2 29.2 43 420-462 245-287 (312)
235 smart00053 DYNc Dynamin, GTPas 75.6 2.8 6.1E-05 45.5 3.8 53 686-751 86-138 (240)
236 PF15254 CCDC14: Coiled-coil d 75.4 2.2E+02 0.0047 36.0 19.5 74 339-412 354-462 (861)
237 TIGR02538 type_IV_pilB type IV 75.2 1.3 2.8E-05 53.8 1.2 30 568-597 306-335 (564)
238 PF15070 GOLGA2L5: Putative go 75.2 2.2E+02 0.0048 35.4 26.4 33 466-498 280-312 (617)
239 PRK10436 hypothetical protein; 75.0 1.4 3E-05 52.3 1.3 30 568-597 208-237 (462)
240 COG2433 Uncharacterized conser 74.9 59 0.0013 39.6 14.5 24 51-74 56-79 (652)
241 PF01576 Myosin_tail_1: Myosin 74.8 0.96 2.1E-05 57.5 0.0 60 353-412 290-349 (859)
242 TIGR02533 type_II_gspE general 74.6 1.5 3.2E-05 52.3 1.5 30 568-597 232-261 (486)
243 PF15290 Syntaphilin: Golgi-lo 74.5 45 0.00097 36.9 12.3 17 351-367 64-80 (305)
244 TIGR01843 type_I_hlyD type I s 74.4 95 0.0021 35.6 16.2 7 575-581 326-332 (423)
245 PRK11281 hypothetical protein; 73.9 3.1E+02 0.0067 36.5 23.5 12 568-579 414-425 (1113)
246 TIGR01005 eps_transp_fam exopo 73.9 2.5E+02 0.0054 35.4 21.1 18 257-274 165-182 (754)
247 PRK12402 replication factor C 73.7 1.4 3.1E-05 49.0 1.0 42 548-596 13-54 (337)
248 PF00270 DEAD: DEAD/DEAH box h 73.5 1.7 3.7E-05 42.9 1.4 28 568-597 6-33 (169)
249 TIGR01420 pilT_fam pilus retra 73.5 1.6 3.4E-05 49.6 1.4 30 568-597 112-141 (343)
250 KOG1003 Actin filament-coating 73.4 1.3E+02 0.0028 31.9 20.3 19 392-410 110-128 (205)
251 COG3883 Uncharacterized protei 73.2 1.6E+02 0.0034 32.7 20.3 25 451-475 172-196 (265)
252 COG1340 Uncharacterized archae 72.9 1.7E+02 0.0036 32.9 27.3 26 341-366 69-94 (294)
253 TIGR02903 spore_lon_C ATP-depe 72.6 16 0.00035 45.0 9.7 28 568-595 165-192 (615)
254 cd01131 PilT Pilus retraction 72.6 1.2 2.7E-05 46.3 0.2 19 578-596 1-19 (198)
255 COG4477 EzrA Negative regulato 72.6 2.3E+02 0.0049 34.3 19.2 24 350-373 318-341 (570)
256 smart00382 AAA ATPases associa 72.5 1.2 2.7E-05 41.0 0.2 19 579-597 3-21 (148)
257 PF01935 DUF87: Domain of unkn 72.5 1.2 2.6E-05 47.1 0.0 59 767-826 163-221 (229)
258 PF09755 DUF2046: Uncharacteri 72.5 1.8E+02 0.0038 33.0 21.4 32 423-454 171-202 (310)
259 PF12846 AAA_10: AAA-like doma 72.4 1.2 2.7E-05 48.0 0.1 20 578-597 1-20 (304)
260 KOG0728 26S proteasome regulat 72.2 36 0.00078 37.4 10.9 16 578-593 181-196 (404)
261 PF09731 Mitofilin: Mitochondr 72.1 2.4E+02 0.0052 34.4 23.0 17 604-620 491-507 (582)
262 PF06294 DUF1042: Domain of Un 72.1 5 0.00011 40.8 4.4 91 32-129 1-99 (158)
263 KOG3850 Predicted membrane pro 71.8 1.7E+02 0.0036 34.0 16.3 45 352-410 321-365 (455)
264 PRK06921 hypothetical protein; 71.6 2.4 5.2E-05 46.6 2.1 37 561-597 97-136 (266)
265 TIGR02525 plasmid_TraJ plasmid 71.6 2 4.3E-05 49.6 1.5 28 568-596 140-167 (372)
266 PRK12422 chromosomal replicati 71.5 2.1 4.6E-05 50.5 1.8 52 544-597 105-160 (445)
267 KOG0249 LAR-interacting protei 71.3 2E+02 0.0044 35.9 17.7 37 439-475 218-257 (916)
268 PF00804 Syntaxin: Syntaxin; 71.1 80 0.0017 28.5 12.0 69 343-412 2-70 (103)
269 PF05701 WEMBL: Weak chloropla 70.9 2.5E+02 0.0054 34.1 27.1 15 393-407 339-353 (522)
270 KOG3000 Microtubule-binding pr 70.6 9.6 0.00021 42.5 6.5 101 28-136 16-119 (295)
271 TIGR02524 dot_icm_DotB Dot/Icm 70.3 2.1 4.6E-05 49.1 1.4 24 574-597 130-153 (358)
272 KOG2129 Uncharacterized conser 69.9 2.3E+02 0.0049 33.2 17.9 37 354-390 259-295 (552)
273 PRK10884 SH3 domain-containing 69.8 1E+02 0.0022 32.9 13.6 6 360-365 98-103 (206)
274 PF10211 Ax_dynein_light: Axon 69.8 1.2E+02 0.0026 31.8 14.1 125 241-401 63-187 (189)
275 TIGR03017 EpsF chain length de 69.5 2.3E+02 0.0049 33.1 20.6 17 257-273 142-158 (444)
276 KOG0999 Microtubule-associated 69.5 2.7E+02 0.0058 33.9 22.6 42 359-400 93-134 (772)
277 PF13604 AAA_30: AAA domain; P 69.1 2.3 4.9E-05 44.4 1.2 29 568-596 8-36 (196)
278 cd01129 PulE-GspE PulE/GspE Th 68.9 2.5 5.4E-05 46.4 1.5 29 568-596 70-98 (264)
279 PF00437 T2SE: Type II/IV secr 68.5 2 4.3E-05 46.7 0.7 19 578-596 127-145 (270)
280 PF15294 Leu_zip: Leucine zipp 68.4 58 0.0013 36.2 11.8 31 297-327 144-174 (278)
281 PF04111 APG6: Autophagy prote 68.4 62 0.0014 36.6 12.5 10 589-598 215-224 (314)
282 COG5008 PilU Tfp pilus assembl 68.0 3.2 6.9E-05 45.6 2.0 34 563-596 110-145 (375)
283 smart00503 SynN Syntaxin N-ter 67.7 1.1E+02 0.0023 28.6 13.3 67 343-410 3-69 (117)
284 PF01637 Arch_ATPase: Archaeal 67.6 1.9 4.1E-05 44.5 0.3 30 567-596 9-38 (234)
285 PF04111 APG6: Autophagy prote 67.1 61 0.0013 36.6 12.1 29 340-368 63-91 (314)
286 PF15294 Leu_zip: Leucine zipp 67.1 2.1E+02 0.0047 31.9 15.8 46 345-398 129-174 (278)
287 KOG0980 Actin-binding protein 66.8 3.7E+02 0.008 34.5 25.0 15 255-269 329-343 (980)
288 KOG1760 Molecular chaperone Pr 66.7 74 0.0016 31.2 10.6 25 342-366 24-48 (131)
289 PF13191 AAA_16: AAA ATPase do 66.6 1.4 3.1E-05 44.1 -0.9 29 567-595 13-41 (185)
290 PF06548 Kinesin-related: Kine 66.3 2.8E+02 0.0061 32.9 23.2 19 347-365 221-239 (488)
291 PF00261 Tropomyosin: Tropomyo 66.3 2E+02 0.0042 31.1 22.4 21 392-412 128-148 (237)
292 PRK13894 conjugal transfer ATP 66.2 3.1 6.8E-05 46.9 1.7 29 567-596 138-166 (319)
293 PF10186 Atg14: UV radiation r 66.1 2E+02 0.0044 31.3 17.8 9 399-407 85-93 (302)
294 KOG1899 LAR transmembrane tyro 66.1 2.5E+02 0.0054 34.6 16.8 19 346-364 172-190 (861)
295 PF11932 DUF3450: Protein of u 64.9 1.8E+02 0.004 31.5 14.9 26 342-367 43-68 (251)
296 PF00448 SRP54: SRP54-type pro 64.8 2 4.4E-05 44.9 -0.1 17 580-596 3-19 (196)
297 PF01695 IstB_IS21: IstB-like 64.5 3.4 7.3E-05 42.6 1.4 19 579-597 48-66 (178)
298 PF12718 Tropomyosin_1: Tropom 64.5 1.6E+02 0.0035 29.5 19.5 20 390-409 41-60 (143)
299 PRK10929 putative mechanosensi 64.3 4.3E+02 0.0093 35.2 20.1 15 567-581 389-403 (1109)
300 PRK12704 phosphodiesterase; Pr 64.2 3.3E+02 0.0072 33.1 23.9 20 550-570 276-295 (520)
301 PF13479 AAA_24: AAA domain 64.2 2.8 6E-05 44.3 0.7 20 578-597 3-22 (213)
302 TIGR03015 pepcterm_ATPase puta 64.2 4.3 9.4E-05 43.6 2.2 23 574-596 39-61 (269)
303 KOG4360 Uncharacterized coiled 64.2 3.2E+02 0.007 32.9 20.4 27 438-464 262-288 (596)
304 PLN02939 transferase, transfer 63.8 4.5E+02 0.0098 34.4 23.0 18 294-311 165-182 (977)
305 TIGR02782 TrbB_P P-type conjug 63.6 3.6 7.8E-05 46.0 1.5 29 567-596 122-150 (299)
306 COG1340 Uncharacterized archae 63.6 2.6E+02 0.0055 31.5 21.5 28 459-486 190-217 (294)
307 PF05911 DUF869: Plant protein 63.3 4.2E+02 0.009 33.9 21.5 32 381-412 82-113 (769)
308 TIGR03319 YmdA_YtgF conserved 63.0 3.5E+02 0.0075 32.9 23.4 7 560-566 279-285 (514)
309 PF05673 DUF815: Protein of un 63.0 4.9 0.00011 43.8 2.3 130 547-721 24-155 (249)
310 PF13207 AAA_17: AAA domain; P 62.9 2.9 6.2E-05 39.2 0.5 16 580-595 1-16 (121)
311 KOG0517 Beta-spectrin [Cytoske 62.6 27 0.00059 47.1 8.9 71 30-105 51-121 (2473)
312 TIGR00635 ruvB Holliday juncti 62.3 4.3 9.2E-05 44.8 1.8 40 557-596 7-48 (305)
313 PF10267 Tmemb_cc2: Predicted 62.3 1.2E+02 0.0025 35.6 13.3 23 389-411 296-318 (395)
314 TIGR03319 YmdA_YtgF conserved 61.9 3.6E+02 0.0079 32.7 20.9 8 491-498 188-195 (514)
315 PF06008 Laminin_I: Laminin Do 61.7 2.5E+02 0.0054 30.7 22.1 23 257-279 18-40 (264)
316 PLN03229 acetyl-coenzyme A car 61.4 4.3E+02 0.0094 33.4 22.1 69 225-293 421-492 (762)
317 KOG1265 Phospholipase C [Lipid 61.0 54 0.0012 41.5 10.6 17 3-19 678-694 (1189)
318 PF10267 Tmemb_cc2: Predicted 60.9 3.3E+02 0.0072 32.0 16.8 12 91-102 29-40 (395)
319 PF07798 DUF1640: Protein of u 60.5 2.1E+02 0.0045 29.5 16.8 19 436-454 137-155 (177)
320 PF00004 AAA: ATPase family as 60.4 3 6.6E-05 39.2 0.2 15 581-595 1-15 (132)
321 PRK10929 putative mechanosensi 60.3 5.5E+02 0.012 34.3 23.1 13 489-501 303-315 (1109)
322 PF06548 Kinesin-related: Kine 60.3 3.6E+02 0.0077 32.1 20.6 62 419-481 284-346 (488)
323 PF02562 PhoH: PhoH-like prote 60.1 5.8 0.00013 42.1 2.2 27 569-597 12-38 (205)
324 cd01130 VirB11-like_ATPase Typ 59.6 4.9 0.00011 41.4 1.5 30 566-596 14-43 (186)
325 PRK13833 conjugal transfer pro 59.6 4.3 9.3E-05 46.0 1.2 29 567-596 134-162 (323)
326 KOG2077 JNK/SAPK-associated pr 59.5 70 0.0015 38.6 10.8 45 349-408 330-374 (832)
327 PRK12723 flagellar biosynthesi 59.5 6.1 0.00013 45.9 2.5 20 578-597 174-193 (388)
328 PF07889 DUF1664: Protein of u 59.5 1.8E+02 0.0039 28.7 12.1 33 369-401 46-78 (126)
329 KOG0727 26S proteasome regulat 59.4 74 0.0016 35.1 10.2 81 547-627 152-251 (408)
330 KOG2751 Beclin-like protein [S 59.0 1.5E+02 0.0034 34.7 13.3 33 769-807 369-407 (447)
331 TIGR03499 FlhF flagellar biosy 59.0 6.4 0.00014 43.5 2.4 18 580-597 196-213 (282)
332 COG4962 CpaF Flp pilus assembl 58.9 4.7 0.0001 45.8 1.4 29 567-596 163-191 (355)
333 PF06309 Torsin: Torsin; Inte 58.8 3.5 7.6E-05 40.5 0.3 15 581-595 56-70 (127)
334 PF05010 TACC: Transforming ac 58.8 2.6E+02 0.0055 30.0 23.8 40 338-377 66-105 (207)
335 PTZ00361 26 proteosome regulat 58.8 7.9 0.00017 45.7 3.2 94 502-595 127-234 (438)
336 smart00487 DEXDc DEAD-like hel 58.8 5.7 0.00012 39.2 1.8 28 569-597 16-43 (201)
337 PF04156 IncA: IncA protein; 58.6 2.2E+02 0.0049 29.2 15.7 23 347-369 94-116 (191)
338 TIGR00631 uvrb excinuclease AB 58.1 11 0.00024 46.7 4.5 93 547-644 2-98 (655)
339 PF13086 AAA_11: AAA domain; P 58.0 4.3 9.3E-05 41.9 0.8 28 569-597 9-36 (236)
340 KOG4807 F-actin binding protei 57.7 3.6E+02 0.0078 31.4 21.9 174 262-458 347-540 (593)
341 PF05496 RuvB_N: Holliday junc 57.3 9.6 0.00021 41.1 3.3 42 553-594 23-66 (233)
342 TIGR01000 bacteriocin_acc bact 57.0 3.9E+02 0.0085 31.6 19.9 18 568-585 367-384 (457)
343 PF07798 DUF1640: Protein of u 57.0 2.4E+02 0.0052 29.1 17.6 23 342-364 74-96 (177)
344 KOG0989 Replication factor C, 56.7 7.4 0.00016 43.7 2.4 44 553-596 30-75 (346)
345 PF07106 TBPIP: Tat binding pr 56.6 61 0.0013 33.0 8.9 14 480-493 156-169 (169)
346 PRK13342 recombination factor 56.6 5.9 0.00013 46.1 1.7 39 558-596 16-54 (413)
347 PF15066 CAGE1: Cancer-associa 56.5 4.1E+02 0.009 31.7 20.1 25 437-461 478-502 (527)
348 PF07058 Myosin_HC-like: Myosi 56.4 47 0.001 37.1 8.3 18 484-501 113-130 (351)
349 COG2433 Uncharacterized conser 56.2 1.1E+02 0.0023 37.5 11.8 12 262-273 391-402 (652)
350 PF10234 Cluap1: Clusterin-ass 56.0 1.7E+02 0.0036 32.6 12.5 102 343-478 137-241 (267)
351 PTZ00424 helicase 45; Provisio 56.0 6.1 0.00013 45.2 1.7 28 567-596 56-83 (401)
352 TIGR03545 conserved hypothetic 55.8 76 0.0016 38.8 10.9 18 546-563 356-373 (555)
353 TIGR03752 conj_TIGR03752 integ 55.7 1.1E+02 0.0023 36.6 11.6 12 545-556 194-205 (472)
354 TIGR03346 chaperone_ClpB ATP-d 55.6 2.4E+02 0.0051 36.4 15.8 37 559-595 570-612 (852)
355 PRK11776 ATP-dependent RNA hel 55.6 6.4 0.00014 46.3 1.8 25 568-594 33-57 (460)
356 PF15619 Lebercilin: Ciliary p 55.5 2.8E+02 0.006 29.3 20.6 25 387-411 121-145 (194)
357 PF15619 Lebercilin: Ciliary p 55.4 2.8E+02 0.006 29.3 21.1 105 363-470 58-165 (194)
358 cd00268 DEADc DEAD-box helicas 55.2 7.1 0.00015 40.0 1.9 26 568-595 28-53 (203)
359 PF06160 EzrA: Septation ring 55.0 4.8E+02 0.01 32.0 28.3 46 365-410 218-271 (560)
360 PF05970 PIF1: PIF1-like helic 54.8 6.4 0.00014 45.1 1.6 37 556-595 3-39 (364)
361 PF00580 UvrD-helicase: UvrD/R 54.7 4.6 0.0001 43.9 0.4 21 577-597 12-32 (315)
362 KOG0982 Centrosomal protein Nu 54.7 4.3E+02 0.0092 31.3 18.9 42 369-410 282-323 (502)
363 PF01580 FtsK_SpoIIIE: FtsK/Sp 54.6 3.8 8.2E-05 42.6 -0.3 18 580-597 40-57 (205)
364 PF00063 Myosin_head: Myosin h 54.5 6.1 0.00013 49.2 1.5 35 561-595 67-102 (689)
365 PF03215 Rad17: Rad17 cell cyc 54.5 6.5 0.00014 47.4 1.7 31 565-595 30-62 (519)
366 PF08614 ATG16: Autophagy prot 54.4 1.7E+02 0.0037 30.5 12.0 24 439-462 153-176 (194)
367 PRK00409 recombination and DNA 54.4 2.3E+02 0.005 36.2 15.2 24 118-141 271-294 (782)
368 PRK13900 type IV secretion sys 54.4 6.1 0.00013 44.9 1.3 30 566-596 149-178 (332)
369 KOG0979 Structural maintenance 53.8 6.4E+02 0.014 33.0 25.9 19 266-284 126-144 (1072)
370 KOG4460 Nuclear pore complex, 53.7 3.7E+02 0.008 32.7 15.3 27 455-481 655-681 (741)
371 KOG0962 DNA repair protein RAD 53.5 7.2E+02 0.016 33.5 24.4 32 798-831 1199-1230(1294)
372 KOG2991 Splicing regulator [RN 53.5 3.5E+02 0.0075 29.9 20.6 69 342-410 178-255 (330)
373 PRK13851 type IV secretion sys 53.1 4.7 0.0001 46.0 0.2 31 566-597 151-181 (344)
374 PF03962 Mnd1: Mnd1 family; I 53.0 1.5E+02 0.0032 31.1 11.2 93 384-481 62-154 (188)
375 PRK09183 transposase/IS protei 52.7 6.2 0.00013 43.1 1.0 21 575-597 101-121 (259)
376 PF00910 RNA_helicase: RNA hel 52.6 4 8.6E-05 38.2 -0.4 16 581-596 1-16 (107)
377 PF10498 IFT57: Intra-flagella 52.3 3.1E+02 0.0068 31.7 14.6 27 86-115 41-67 (359)
378 PRK11192 ATP-dependent RNA hel 52.3 7.7 0.00017 45.2 1.8 26 568-595 30-55 (434)
379 TIGR00348 hsdR type I site-spe 52.2 8.4 0.00018 47.9 2.1 33 564-597 245-282 (667)
380 KOG4460 Nuclear pore complex, 51.9 3.1E+02 0.0067 33.4 14.3 23 345-367 592-614 (741)
381 PF05557 MAD: Mitotic checkpoi 51.7 1.7E+02 0.0036 36.9 13.4 32 341-372 503-534 (722)
382 PF13671 AAA_33: AAA domain; P 51.6 5.4 0.00012 38.4 0.3 15 581-595 2-16 (143)
383 PF11559 ADIP: Afadin- and alp 51.6 2.6E+02 0.0056 27.8 17.3 44 427-470 98-141 (151)
384 TIGR03007 pepcterm_ChnLen poly 51.2 4.9E+02 0.011 30.9 23.1 36 241-277 143-178 (498)
385 KOG0335 ATP-dependent RNA heli 51.2 4.9 0.00011 47.5 -0.1 66 570-641 105-189 (482)
386 PHA02544 44 clamp loader, smal 51.1 7.8 0.00017 43.0 1.5 23 575-597 39-62 (316)
387 PRK13764 ATPase; Provisional 51.0 6.9 0.00015 47.9 1.1 20 578-597 257-276 (602)
388 PF15035 Rootletin: Ciliary ro 51.0 3.1E+02 0.0068 28.7 16.2 28 437-464 102-129 (182)
389 PF08581 Tup_N: Tup N-terminal 51.0 1.9E+02 0.0042 26.2 11.2 44 428-471 30-73 (79)
390 PRK04195 replication factor C 50.6 10 0.00022 45.2 2.4 36 560-595 20-56 (482)
391 PRK04837 ATP-dependent RNA hel 50.5 8.3 0.00018 44.9 1.7 26 568-595 37-62 (423)
392 PRK10361 DNA recombination pro 50.5 5.3E+02 0.011 31.1 23.3 28 349-376 75-102 (475)
393 PF05622 HOOK: HOOK protein; 50.5 5.2 0.00011 50.0 0.0 66 31-103 11-82 (713)
394 PF06785 UPF0242: Uncharacteri 50.0 4.5E+02 0.0097 30.1 16.2 22 611-640 283-304 (401)
395 PF13238 AAA_18: AAA domain; P 49.8 6.1 0.00013 36.9 0.3 15 581-595 1-15 (129)
396 KOG3091 Nuclear pore complex, 49.6 3.7E+02 0.008 32.3 14.5 16 270-285 337-352 (508)
397 PF07724 AAA_2: AAA domain (Cd 49.3 6.5 0.00014 40.3 0.5 17 579-595 4-20 (171)
398 PRK11281 hypothetical protein; 49.2 8E+02 0.017 32.8 24.8 12 490-501 324-335 (1113)
399 PRK10590 ATP-dependent RNA hel 49.0 9.6 0.00021 44.9 1.9 26 568-595 30-55 (456)
400 PRK06547 hypothetical protein; 48.8 12 0.00026 38.3 2.4 27 569-595 6-32 (172)
401 PF05622 HOOK: HOOK protein; 48.8 5.8 0.00012 49.6 0.0 30 94-123 10-42 (713)
402 TIGR03185 DNA_S_dndD DNA sulfu 48.7 6.3E+02 0.014 31.5 22.3 199 239-467 295-518 (650)
403 PRK00409 recombination and DNA 48.3 5.7E+02 0.012 32.7 17.3 42 560-619 715-757 (782)
404 PF10473 CENP-F_leu_zip: Leuci 48.3 3E+02 0.0066 27.7 18.7 31 349-379 18-48 (140)
405 PF07728 AAA_5: AAA domain (dy 48.0 5.5 0.00012 38.5 -0.3 15 581-595 2-16 (139)
406 PF04108 APG17: Autophagy prot 47.8 4.6E+02 0.01 30.8 15.4 18 54-71 7-24 (412)
407 PLN03137 ATP-dependent DNA hel 47.7 81 0.0018 41.6 9.8 27 567-595 466-492 (1195)
408 COG1223 Predicted ATPase (AAA+ 47.5 7 0.00015 43.0 0.4 18 578-595 151-168 (368)
409 COG0419 SbcC ATPase involved i 47.3 7.6E+02 0.017 32.1 29.3 17 200-216 132-148 (908)
410 PF06414 Zeta_toxin: Zeta toxi 47.3 7 0.00015 40.6 0.4 20 577-596 14-33 (199)
411 PRK04406 hypothetical protein; 47.2 1.1E+02 0.0025 27.3 7.9 14 389-402 9-22 (75)
412 PRK00080 ruvB Holliday junctio 47.0 11 0.00024 42.4 1.9 39 558-596 29-69 (328)
413 KOG1265 Phospholipase C [Lipid 46.5 7.8E+02 0.017 31.9 21.0 22 381-402 1079-1100(1189)
414 smart00242 MYSc Myosin. Large 46.3 13 0.00028 46.3 2.5 36 560-595 73-109 (677)
415 COG0419 SbcC ATPase involved i 46.3 7.9E+02 0.017 31.9 27.6 6 495-500 450-455 (908)
416 KOG0979 Structural maintenance 46.2 8.2E+02 0.018 32.1 27.6 94 433-537 866-960 (1072)
417 PRK14722 flhF flagellar biosyn 46.2 7.3 0.00016 45.0 0.3 19 579-597 138-156 (374)
418 cd01383 MYSc_type_VIII Myosin 46.2 14 0.00031 45.9 2.9 35 561-595 74-109 (677)
419 TIGR03752 conj_TIGR03752 integ 46.1 1.2E+02 0.0026 36.2 10.0 11 610-620 247-257 (472)
420 TIGR02680 conserved hypothetic 46.1 9.5E+02 0.021 32.8 26.7 13 268-280 743-755 (1353)
421 TIGR01069 mutS2 MutS2 family p 46.1 4.9E+02 0.011 33.3 16.2 19 120-138 268-286 (771)
422 PF08614 ATG16: Autophagy prot 46.1 2.4E+02 0.0052 29.4 11.6 20 439-458 139-158 (194)
423 cd01385 MYSc_type_IX Myosin mo 46.0 14 0.00031 46.1 2.8 35 561-595 76-111 (692)
424 TIGR03017 EpsF chain length de 46.0 5.4E+02 0.012 30.0 25.7 37 241-278 153-189 (444)
425 KOG0926 DEAH-box RNA helicase 45.9 13 0.00028 46.4 2.2 18 578-595 271-288 (1172)
426 cd01384 MYSc_type_XI Myosin mo 45.8 15 0.00032 45.8 2.9 35 561-595 70-105 (674)
427 PF12004 DUF3498: Domain of un 45.8 6.8 0.00015 46.7 0.0 56 353-412 374-429 (495)
428 PF05384 DegS: Sensor protein 45.7 3.5E+02 0.0077 27.7 21.2 66 377-446 52-121 (159)
429 PF04012 PspA_IM30: PspA/IM30 45.7 3.9E+02 0.0085 28.2 18.4 32 238-274 6-37 (221)
430 cd01381 MYSc_type_VII Myosin m 45.7 15 0.00033 45.7 3.0 35 561-595 68-103 (671)
431 PF01576 Myosin_tail_1: Myosin 45.7 6.9 0.00015 50.0 0.0 23 263-285 35-57 (859)
432 PLN03025 replication factor C 45.6 10 0.00022 42.6 1.3 18 580-597 36-53 (319)
433 KOG4403 Cell surface glycoprot 45.5 5.8E+02 0.013 30.2 19.0 36 465-500 393-428 (575)
434 TIGR02881 spore_V_K stage V sp 45.4 7.5 0.00016 42.2 0.2 17 580-596 44-60 (261)
435 PRK10536 hypothetical protein; 45.4 8.8 0.00019 42.2 0.8 41 547-596 52-92 (262)
436 TIGR00763 lon ATP-dependent pr 45.3 8.9 0.00019 48.4 0.9 16 580-595 349-364 (775)
437 PF12761 End3: Actin cytoskele 45.2 2E+02 0.0044 30.5 10.5 18 394-411 135-152 (195)
438 PF12004 DUF3498: Domain of un 45.1 7.1 0.00015 46.5 0.0 8 108-115 102-109 (495)
439 PF04012 PspA_IM30: PspA/IM30 45.1 4E+02 0.0086 28.1 18.9 19 389-407 56-74 (221)
440 PRK13341 recombination factor 44.9 11 0.00024 47.3 1.6 39 559-597 33-71 (725)
441 cd01387 MYSc_type_XV Myosin mo 44.6 15 0.00033 45.8 2.7 35 561-595 69-104 (677)
442 PHA00729 NTP-binding motif con 44.5 15 0.00033 39.6 2.4 29 569-597 8-36 (226)
443 cd01378 MYSc_type_I Myosin mot 44.5 16 0.00035 45.5 2.9 35 561-595 68-103 (674)
444 PF04849 HAP1_N: HAP1 N-termin 44.5 5.2E+02 0.011 29.3 17.6 12 353-364 172-183 (306)
445 TIGR01389 recQ ATP-dependent D 44.4 12 0.00026 45.6 1.8 28 567-596 19-46 (591)
446 COG1201 Lhr Lhr-like helicases 44.2 15 0.00033 46.4 2.6 51 795-851 335-391 (814)
447 cd00124 MYSc Myosin motor doma 44.2 16 0.00034 45.6 2.8 36 560-595 67-103 (679)
448 KOG3215 Uncharacterized conser 44.2 4.3E+02 0.0093 28.3 16.7 29 382-410 94-122 (222)
449 KOG3631 Alpha-parvin and relat 44.1 45 0.00097 36.7 5.7 98 29-133 92-196 (365)
450 PRK11889 flhF flagellar biosyn 43.8 14 0.0003 43.2 2.1 18 579-596 242-259 (436)
451 COG1219 ClpX ATP-dependent pro 43.7 9.6 0.00021 43.0 0.7 17 578-594 97-113 (408)
452 PRK11448 hsdR type I restricti 43.6 11 0.00023 49.7 1.2 34 563-597 419-452 (1123)
453 PRK00440 rfc replication facto 43.5 9.9 0.00021 41.9 0.8 21 575-595 35-55 (319)
454 KOG0980 Actin-binding protein 43.2 8.6E+02 0.019 31.5 28.2 23 388-410 463-485 (980)
455 PF05557 MAD: Mitotic checkpoi 42.7 8.2 0.00018 48.4 0.0 25 856-880 605-629 (722)
456 PRK02119 hypothetical protein; 42.5 1.4E+02 0.003 26.6 7.7 19 431-449 31-49 (73)
457 TIGR00614 recQ_fam ATP-depende 42.4 15 0.00032 43.5 2.1 26 568-595 18-43 (470)
458 cd01380 MYSc_type_V Myosin mot 42.4 17 0.00038 45.3 2.8 35 561-595 68-103 (691)
459 PRK00771 signal recognition pa 42.3 21 0.00045 42.2 3.2 20 578-597 95-114 (437)
460 PF08581 Tup_N: Tup N-terminal 42.3 1.8E+02 0.0039 26.4 8.5 50 349-402 26-75 (79)
461 PRK00295 hypothetical protein; 42.2 1.6E+02 0.0035 25.8 8.0 17 431-447 27-43 (68)
462 cd01377 MYSc_type_II Myosin mo 42.2 17 0.00037 45.4 2.7 36 560-595 72-108 (693)
463 COG3074 Uncharacterized protei 42.1 2.5E+02 0.0054 25.0 10.0 18 435-452 44-61 (79)
464 PF04102 SlyX: SlyX; InterPro 42.1 1.1E+02 0.0024 26.7 7.0 23 431-453 26-48 (69)
465 PRK01297 ATP-dependent RNA hel 42.0 14 0.0003 43.8 1.7 26 568-595 116-141 (475)
466 COG2256 MGS1 ATPase related to 42.0 14 0.0003 43.0 1.6 37 558-594 28-64 (436)
467 COG1222 RPT1 ATP-dependent 26S 41.6 14 0.00031 42.3 1.7 78 549-627 150-247 (406)
468 TIGR01241 FtsH_fam ATP-depende 41.5 9.3 0.0002 45.6 0.2 51 546-596 51-106 (495)
469 KOG2077 JNK/SAPK-associated pr 41.5 3E+02 0.0066 33.5 12.2 48 342-393 330-377 (832)
470 cd01382 MYSc_type_VI Myosin mo 41.4 18 0.00039 45.4 2.7 35 561-595 73-108 (717)
471 PF07106 TBPIP: Tat binding pr 41.4 3.5E+02 0.0075 27.5 11.6 24 389-412 114-137 (169)
472 PRK11331 5-methylcytosine-spec 41.3 15 0.00033 43.5 1.9 27 567-595 185-211 (459)
473 PF11068 YlqD: YlqD protein; 41.2 2.4E+02 0.0051 28.1 9.9 11 500-510 98-108 (131)
474 PRK11634 ATP-dependent RNA hel 41.2 13 0.00029 45.8 1.5 26 568-595 35-60 (629)
475 PRK04778 septation ring format 41.1 7.6E+02 0.017 30.3 29.2 43 368-410 225-275 (569)
476 KOG2543 Origin recognition com 41.0 9.4 0.0002 44.0 0.2 17 580-596 32-48 (438)
477 TIGR01069 mutS2 MutS2 family p 40.7 5.3E+02 0.011 33.0 15.3 41 560-618 704-745 (771)
478 PF12775 AAA_7: P-loop contain 40.7 13 0.00028 41.1 1.1 28 568-596 24-51 (272)
479 PF04100 Vps53_N: Vps53-like, 40.3 5.8E+02 0.013 29.7 14.5 58 438-499 113-170 (383)
480 KOG2751 Beclin-like protein [S 39.9 5.8E+02 0.013 30.3 13.9 18 347-364 182-199 (447)
481 KOG1854 Mitochondrial inner me 39.8 8.4E+02 0.018 30.4 23.5 24 489-512 471-497 (657)
482 PHA02244 ATPase-like protein 39.8 21 0.00046 41.3 2.7 24 571-596 114-137 (383)
483 PRK14974 cell division protein 39.7 21 0.00045 40.8 2.6 20 577-596 139-158 (336)
484 TIGR00064 ftsY signal recognit 39.5 20 0.00044 39.5 2.4 20 578-597 72-91 (272)
485 PRK02793 phi X174 lysis protei 39.3 1.7E+02 0.0037 25.9 7.7 14 389-402 6-19 (72)
486 TIGR02680 conserved hypothetic 39.0 1.2E+03 0.026 31.9 29.3 10 788-797 839-848 (1353)
487 PRK04537 ATP-dependent RNA hel 39.0 16 0.00035 44.5 1.8 26 568-595 38-63 (572)
488 KOG0736 Peroxisome assembly fa 39.0 32 0.00069 43.1 4.1 23 602-624 783-805 (953)
489 PRK09841 cryptic autophosphory 39.0 5.8E+02 0.013 32.2 15.4 20 578-597 532-551 (726)
490 PRK10416 signal recognition pa 38.8 21 0.00047 40.3 2.6 18 579-596 115-132 (318)
491 smart00763 AAA_PrkA PrkA AAA d 38.8 24 0.00051 40.7 2.9 42 549-594 49-94 (361)
492 TIGR02902 spore_lonB ATP-depen 38.6 18 0.00039 43.8 2.0 39 548-593 63-101 (531)
493 PRK05703 flhF flagellar biosyn 38.5 11 0.00024 44.3 0.2 16 580-595 223-238 (424)
494 PF02456 Adeno_IVa2: Adenoviru 38.4 12 0.00025 42.2 0.4 12 582-593 91-102 (369)
495 PRK04325 hypothetical protein; 38.4 1.7E+02 0.0036 26.2 7.5 56 384-457 2-57 (74)
496 PRK11519 tyrosine kinase; Prov 38.0 6.7E+02 0.014 31.7 15.6 122 372-495 255-389 (719)
497 KOG4593 Mitotic checkpoint pro 37.9 9.3E+02 0.02 30.3 25.2 206 296-501 59-273 (716)
498 KOG4001 Axonemal dynein light 37.7 4E+02 0.0087 28.4 11.2 90 312-401 155-252 (259)
499 PF10482 CtIP_N: Tumour-suppre 37.7 4E+02 0.0086 26.0 12.4 109 360-496 1-120 (120)
500 TIGR01618 phage_P_loop phage n 37.6 12 0.00027 40.0 0.4 17 578-594 12-28 (220)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.6e-100 Score=899.15 Aligned_cols=596 Identities=38% Similarity=0.515 Sum_probs=516.4
Q ss_pred CCCCCCCccHHHHHHHhhhccccccCCCCchHHHHHHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHhhhhHHHHHHHhh
Q 042277 229 SLDNAPTQSLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALA 308 (899)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 308 (899)
...++|...+..+...+++....++...+.......++.+..++..++..+...+.+.+..++..++.+.+.+.++.+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~ 148 (670)
T KOG0239|consen 69 EGSNQPGGLLARLFKELIDLANSDKTSNVVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELA 148 (670)
T ss_pred hhhcCcchhHHHhhhhcccccccCCCchhHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHH
Confidence 34578888888888888888888887766677789999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHhhhhhHHHhhhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Q 042277 309 SGTGEETEIVMNQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSG 388 (899)
Q Consensus 309 ~~~~~~~~~~~~~l~~~~~e~~k~ee~~~~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~ 388 (899)
..+.......... ..++..+ ......++....+.++..+.++|+..+..++..+.+++. ....+..
T Consensus 149 ~~~~~~~~~~~~~------------~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~-~~~~~~~ 214 (670)
T KOG0239|consen 149 QENRGLYLDLSKV------------TPENSLS-LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS-AQEERRV 214 (670)
T ss_pred hhhcccccccccc------------chhhhHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHH
Confidence 8777543222110 0000111 334556777888999999999999999999999988887 4444444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042277 389 FEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLG 468 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~ 468 (899)
|++... ...+.+..+++++..... ....++.++..+++|+..+..++.++...++.+.+.+..++
T Consensus 215 l~~~~~----~~~~~~~~~~~l~~~~~~-----------~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (670)
T KOG0239|consen 215 LADSLG----NYADLRRNIKPLEGLEST-----------IKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESN 279 (670)
T ss_pred HHHHhh----hhhhHHHhhhhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 233455555555443333 23335666777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHH---HHHhhhhhhhhhcCCCEEEEEecCCCCCCCCCC-CceEEEEccCCeEEecCCCCCCCCCc
Q 042277 469 VRLKALAGAAENYHAVL---AENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKK-QTTIEYIGENGELIFGNPSKPGKDGQ 544 (899)
Q Consensus 469 ~~l~~l~~~~~~y~~~~---~e~R~l~N~iqelkGnIrV~~RVRP~~~~E~~~-~~~v~~~~~~~~v~i~~p~~~~~~~~ 544 (899)
..+..|.....+|+... .+||+|||+|+||||||||||||||+++.+... ...+...++.+++.+..|....+...
T Consensus 280 ~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (670)
T KOG0239|consen 280 TLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEP 359 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCcc
Confidence 99999999999999888 899999999999999999999999999998874 45566665557789999887777767
Q ss_pred eeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccC
Q 042277 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRR 624 (899)
Q Consensus 545 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~ 624 (899)
+.|.||+||+|.++|++||.++.|+|++||||||+||||||||||||||||.|| +++++|||||++++||..++...
T Consensus 360 ~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~ 436 (670)
T KOG0239|consen 360 QSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLK 436 (670)
T ss_pred ccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhc
Confidence 789999999999999999999999999999999999999999999999999997 46789999999999999999988
Q ss_pred CCeeEEEEEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhccc
Q 042277 625 SSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRA 704 (899)
Q Consensus 625 ~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~ 704 (899)
.+|.|.+.++|+|||||+|+|||.+... .....+..+..++++|++++.++|.+.+++..+++.|.++|+
T Consensus 437 ~g~~y~~~~s~~EIYNe~i~DlL~~~~~----------~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRs 506 (670)
T KOG0239|consen 437 SGWKYDKTVSMLEIYNEAIRDLLSDESY----------VGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRS 506 (670)
T ss_pred cCceEEeeeehhHHHHHHHHHhcccccc----------ccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhcccc
Confidence 8999999999999999999999987641 112234556667899999999999999999999999999999
Q ss_pred ccccCCCCCCCCceeEEEEEEEeecCCCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC
Q 042277 705 IGATALNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK 784 (899)
Q Consensus 705 ~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k 784 (899)
+++|.+|++|||||+||+|+|.+.+..++....|+|+|||||||||+++++++|+|++|+++||+||++||+||.||+++
T Consensus 507 v~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k 586 (670)
T KOG0239|consen 507 VASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK 586 (670)
T ss_pred ccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccCcchhhHHHHHHHHHHHHH
Q 042277 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRDVRELMEQVASLKD 864 (899)
Q Consensus 785 ~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~~~~~~~~L~eqv~~Lk~ 864 (899)
++||||||||||+||||||||++||+|||+|||...++.||+++|+||+||+.+.+|+++......+...++.....++.
T Consensus 587 ~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~~ 666 (670)
T KOG0239|consen 587 RSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEKL 666 (670)
T ss_pred CCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888888777766
Q ss_pred HH
Q 042277 865 TI 866 (899)
Q Consensus 865 ~i 866 (899)
.+
T Consensus 667 ~~ 668 (670)
T KOG0239|consen 667 ST 668 (670)
T ss_pred hh
Confidence 54
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.5e-86 Score=757.08 Aligned_cols=357 Identities=41% Similarity=0.629 Sum_probs=316.2
Q ss_pred CCCEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhch-HHHHHHHHc
Q 042277 499 KGNIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDT-QPLIRSVLD 575 (899)
Q Consensus 499 kGnIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLd 575 (899)
..+|+|++|+||+.+.+... ...+.+....+.+.+.+|........+.|+||.||+++++|++||..+ .|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 35799999999998866543 345556666677888887665556678899999999999999999985 999999999
Q ss_pred CCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhh
Q 042277 576 GYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWIL 655 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 655 (899)
|||+||||||||||||||||.|++ ++..|||||++.+||..++.......|.|+|||+|||||+|+|||++....
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~---~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~-- 158 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPD---PELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPK-- 158 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCC---hhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcC--
Confidence 999999999999999999999983 678999999999999999988777799999999999999999999987631
Q ss_pred hhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecC-C--C
Q 042277 656 AICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDL-K--T 732 (899)
Q Consensus 656 ~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~-~--~ 732 (899)
.+ -+.+++..|++|.|++++.|.|+++++.+|..|.++|.+++|.||..|||||+||||+|++... . .
T Consensus 159 --------~l-~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~ 229 (574)
T KOG4280|consen 159 --------GL-ELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGL 229 (574)
T ss_pred --------Cc-eeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCc
Confidence 12 2345567999999999999999999999999999999999999999999999999999998321 1 2
Q ss_pred CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCC-CCCCCCChhhHhhhhhcCCCcceEE
Q 042277 733 GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSP-HVPYRNSKLTQVLQSSLGGQAKTLM 811 (899)
Q Consensus 733 ~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~-hVPYRdSKLT~LLqdsLGGnskT~m 811 (899)
....+|+|+|||||||||..++++.|+|+|||.+||+||++||+||.||++.+. ||||||||||+||||||||||||+|
T Consensus 230 ~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~m 309 (574)
T KOG4280|consen 230 MSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTM 309 (574)
T ss_pred cccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEE
Confidence 346789999999999999999999999999999999999999999999998776 9999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhcCccccccccCcch-hhHHHHHHHHHHHHHHHHHH
Q 042277 812 FVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEG-RDVRELMEQVASLKDTIAKK 869 (899)
Q Consensus 812 I~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~~~-~~~~~L~eqv~~Lk~~i~~~ 869 (899)
|+||+|+..+++||++||+||+|++.|++.|..+.... ..+++|+++++.|+.++...
T Consensus 310 ianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 310 IANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPG 368 (574)
T ss_pred EEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999988765443 56788888888887777653
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-83 Score=759.00 Aligned_cols=361 Identities=37% Similarity=0.578 Sum_probs=308.5
Q ss_pred CCEEEEEecCCCCCCCCCCCceE--EEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHcC
Q 042277 500 GNIRVYCRIRPFLPGQTKKQTTI--EYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLDG 576 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~~~~~v--~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG 576 (899)
-||+|++||||++..|....+.+ .+.+...+|.|... ..++.-.+.|+||+||||.+.|.+||+. |.|+|..|+.|
T Consensus 49 ~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~-~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~G 127 (1041)
T KOG0243|consen 49 VNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT-IASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEG 127 (1041)
T ss_pred CceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc-cccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhcc
Confidence 59999999999999887655433 33333456877765 2334457899999999999999999998 69999999999
Q ss_pred CCeeEeeccccCCcccceeecCC----CCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcch
Q 042277 577 YNVCIFAYGQTGSGKTYTMSGPS----GPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVF 652 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~G~~----~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~ 652 (899)
||||||||||||+||||||+|.- +..+.+.||||||+.+||+.+.... ..|.|.|||+|+|||.|+|||++...
T Consensus 128 yNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 128 YNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred CCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCccc
Confidence 99999999999999999999942 3456788999999999999887654 68999999999999999999998764
Q ss_pred hhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCC
Q 042277 653 WILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKT 732 (899)
Q Consensus 653 ~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~ 732 (899)
... ..+..... ...+..+|+.|.|+.+++|+++.|++.+|..|.+.|.+++|.||.+|||||+||+|+|..+....
T Consensus 206 ~~~---~~~~k~~~-~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~ 281 (1041)
T KOG0243|consen 206 SDK---KLRIKDDS-TIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP 281 (1041)
T ss_pred ccc---ccccccCC-cccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC
Confidence 311 11111110 01146789999999999999999999999999999999999999999999999999997654322
Q ss_pred ---CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcce
Q 042277 733 ---GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKT 809 (899)
Q Consensus 733 ---~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnskT 809 (899)
.....|+|+||||||||.++++|+.+.|.+||..||+||.+||+||.||..+++|||||+|||||||||||||.+||
T Consensus 282 ~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT 361 (1041)
T KOG0243|consen 282 EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKT 361 (1041)
T ss_pred cchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCcee
Confidence 23567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccCcchhh--HHHHHHHHHHHHHHHH
Q 042277 810 LMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRD--VRELMEQVASLKDTIA 867 (899)
Q Consensus 810 ~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~~~~~--~~~L~eqv~~Lk~~i~ 867 (899)
+||+||||+..+++||++||.||.||++|+++|..+.+-.++ ++++-.+|..||..+.
T Consensus 362 ~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 362 CIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLA 421 (1041)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877554433 5677777777776665
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-82 Score=736.77 Aligned_cols=352 Identities=39% Similarity=0.580 Sum_probs=305.4
Q ss_pred CCEEEEEecCCCCCCCCCCC-ceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCC-------CChhhHHhch-HHHH
Q 042277 500 GNIRVYCRIRPFLPGQTKKQ-TTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPD-------ATQAEVFSDT-QPLI 570 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~~~-~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~-------atQeeVF~~v-~pLV 570 (899)
.+|.|.||||||+..|.... .||....++ ++.|.+|... ++ ...|+||+.|+.. ++|..||+++ .|++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn-~ttii~~~~~-k~-~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGN-TTTIINPKGS-KD-APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCC-ceeeecCCCc-cc-CCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 47999999999999997654 344444443 5566565422 22 3349999999753 7899999996 8999
Q ss_pred HHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhc-cCCCeeEEEEEEEEEEeccccccccc-
Q 042277 571 RSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQN-RRSSIMYEVAVQMVEIYNEQVRDLLT- 648 (899)
Q Consensus 571 ~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~V~DLL~- 648 (899)
+++|.|||+||||||||||||||||+|.. .++++|||||++++||..+.. +.....|.|.|||+|||||.|+|||+
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~--~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~ 158 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQ--EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNA 158 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccC--CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhC
Confidence 99999999999999999999999999965 457899999999999997754 45678999999999999999999998
Q ss_pred CcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEee
Q 042277 649 NDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGK 728 (899)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~ 728 (899)
|.... .--+++.+..|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||+|.+.++
T Consensus 159 p~~kg-----------~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk 227 (1221)
T KOG0245|consen 159 PKSKG-----------GLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQK 227 (1221)
T ss_pred CCCCC-----------CceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEee
Confidence 43321 1123455668999999999999999999999999999999999999999999999999999887
Q ss_pred cCCC--C--CceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHcc-------CCCCCCCCCChhhH
Q 042277 729 DLKT--G--IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ-------KSPHVPYRNSKLTQ 797 (899)
Q Consensus 729 ~~~~--~--~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~-------k~~hVPYRdSKLT~ 797 (899)
.... + ...+|+|+|||||||||++.+++.|+||||+.+|||||.+||+||+|||+ ++.+||||||-||+
T Consensus 228 ~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTW 307 (1221)
T KOG0245|consen 228 KHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTW 307 (1221)
T ss_pred eccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHH
Confidence 5433 2 45789999999999999999999999999999999999999999999984 23599999999999
Q ss_pred hhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccCc-chhhHHHHHHHHHHHHHHHH
Q 042277 798 VLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSK-EGRDVRELMEQVASLKDTIA 867 (899)
Q Consensus 798 LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~-~~~~~~~L~eqv~~Lk~~i~ 867 (899)
||+++|||||||+||++|||++.||+|||+|||||.|+++|.+.|+.+.. ..+.+|+|+++|..||..+.
T Consensus 308 LLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~ 378 (1221)
T KOG0245|consen 308 LLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLR 378 (1221)
T ss_pred HHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999876543 45669999999999998876
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=6e-80 Score=737.19 Aligned_cols=357 Identities=38% Similarity=0.579 Sum_probs=298.6
Q ss_pred Hhhhhhhhhhc----CCCEEEEEecCCCCCCCCCCCceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHH
Q 042277 488 NRRLFNEVQDL----KGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVF 563 (899)
Q Consensus 488 ~R~l~N~iqel----kGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF 563 (899)
.|||..+...- .++|+|||||||+.+.|.. ..++.... ++.+.+. .+.|.||+||+++++|++||
T Consensus 82 ~rk~~~~~~~en~~~ds~VkV~VRVRPl~~~E~g-~~iV~~~s-~dsl~I~---------~qtFtFD~VFdp~aTQedVF 150 (1320)
T PLN03188 82 KRKLSAETAPENGVSDSGVKVIVRMKPLNKGEEG-EMIVQKMS-NDSLTIN---------GQTFTFDSIADPESTQEDIF 150 (1320)
T ss_pred hccccccccccccCCCCCeEEEEEcCCCCCccCC-CeeEEEcC-CCeEEEe---------CcEEeCCeeeCCCCCHHHHH
Confidence 45666444333 5799999999999987643 23333333 3455552 25799999999999999999
Q ss_pred hch-HHHHHHHHcCCCeeEeeccccCCcccceeecCCCC------CCCccchhHHHHHHHHHhhhcc-----CCCeeEEE
Q 042277 564 SDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGP------HEEDWGVNYRALNDLFNLSQNR-----RSSIMYEV 631 (899)
Q Consensus 564 ~~v-~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~------~~~~~GIipRal~~LF~~~~~~-----~~~~~~~V 631 (899)
+.+ .|+|+++|+|||+||||||||||||||||+|+... ...++|||||++++||..+... ...+.|.|
T Consensus 151 e~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V 230 (1320)
T PLN03188 151 QLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQC 230 (1320)
T ss_pred HHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEE
Confidence 985 89999999999999999999999999999997532 3467899999999999987542 24568999
Q ss_pred EEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCC
Q 042277 632 AVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALN 711 (899)
Q Consensus 632 ~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N 711 (899)
+|||+|||||+|+|||++.... + .+..+..+|++|.|++++.|.|++|++.+|..|.++|++++|.+|
T Consensus 231 ~vSyLEIYNEkI~DLLsp~~k~-----------L-~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN 298 (1320)
T PLN03188 231 RCSFLEIYNEQITDLLDPSQKN-----------L-QIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSIN 298 (1320)
T ss_pred EEEEEeeecCcceeccccccCC-----------c-eEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCC
Confidence 9999999999999999875321 1 234566789999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEEeecCC--C--CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHcc----
Q 042277 712 ERSSRSHSVVTVHVRGKDLK--T--GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ---- 783 (899)
Q Consensus 712 ~~SSRSH~IftI~v~~~~~~--~--~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~---- 783 (899)
..|||||+||+|+|...... . .....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+.
T Consensus 299 ~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~ 378 (1320)
T PLN03188 299 AESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQT 378 (1320)
T ss_pred CccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999865322 2 234679999999999999999999999999999999999999999999985
Q ss_pred -CCCCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccCcchhhHHHHHHHHHHH
Q 042277 784 -KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRDVRELMEQVASL 862 (899)
Q Consensus 784 -k~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~~~~~~~~L~eqv~~L 862 (899)
+..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+||+.|++.+..+.....++..|++.|..|
T Consensus 379 gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~L 458 (1320)
T PLN03188 379 GKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQL 458 (1320)
T ss_pred CCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999877654444444444444444
Q ss_pred HHHHH
Q 042277 863 KDTIA 867 (899)
Q Consensus 863 k~~i~ 867 (899)
+++|.
T Consensus 459 k~EL~ 463 (1320)
T PLN03188 459 RDELQ 463 (1320)
T ss_pred HHHHH
Confidence 44433
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=9.5e-79 Score=676.73 Aligned_cols=320 Identities=38% Similarity=0.643 Sum_probs=285.7
Q ss_pred CEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCC---------CCCCceeEEeceeeCCCCChhhHHhch-HH
Q 042277 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKP---------GKDGQRMFKFNKVFGPDATQAEVFSDT-QP 568 (899)
Q Consensus 501 nIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~---------~~~~~k~F~FD~VF~~~atQeeVF~~v-~p 568 (899)
||+|||||||+.+.|... ..++.+.+ + .+++.+|... .....+.|.||+||+++++|++||+.+ +|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVD-D-RMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcC-C-CEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 699999999999887543 34555543 3 3444444322 123468999999999999999999985 89
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEeccccccccc
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLT 648 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~ 648 (899)
+|+++++|||+||||||||||||||||+|++ .++||+||++++||+.++.....+.|.|++||+|||||+|+|||+
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 154 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGTD----SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLS 154 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCCC----CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCC
Confidence 9999999999999999999999999999964 678999999999999998877788999999999999999999998
Q ss_pred CcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEee
Q 042277 649 NDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGK 728 (899)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~ 728 (899)
+... . ..+.++..+|++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.
T Consensus 155 ~~~~-----------~-l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~ 222 (338)
T cd01370 155 PSSG-----------P-LELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQK 222 (338)
T ss_pred CCCC-----------C-ceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEE
Confidence 7522 1 134456668999999999999999999999999999999999999999999999999999988
Q ss_pred cCC---CCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC---CCCCCCCChhhHhhhhh
Q 042277 729 DLK---TGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS---PHVPYRNSKLTQVLQSS 802 (899)
Q Consensus 729 ~~~---~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~---~hVPYRdSKLT~LLqds 802 (899)
+.. ......|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+
T Consensus 223 ~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~ 302 (338)
T cd01370 223 DRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDS 302 (338)
T ss_pred ecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHh
Confidence 765 456788999999999999999999999999999999999999999999999877 89999999999999999
Q ss_pred cCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCc
Q 042277 803 LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 803 LGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v 838 (899)
|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 303 Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 303 LGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999876
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.3e-78 Score=672.09 Aligned_cols=320 Identities=42% Similarity=0.602 Sum_probs=279.0
Q ss_pred CCEEEEEecCCCCCCCCCCC--ceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhch-HHHHHHHHcC
Q 042277 500 GNIRVYCRIRPFLPGQTKKQ--TTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDT-QPLIRSVLDG 576 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~~~--~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLdG 576 (899)
++|||||||||+.+.|.... .++.... ++.+++... ..+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~-~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G 73 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLS-SDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSG 73 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcC-CCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 48999999999998886432 3443333 334444322 146899999999999999999985 9999999999
Q ss_pred CCeeEeeccccCCcccceeecCCCC----CCCccchhHHHHHHHHHhhhcc----CCCeeEEEEEEEEEEeccccccccc
Q 042277 577 YNVCIFAYGQTGSGKTYTMSGPSGP----HEEDWGVNYRALNDLFNLSQNR----RSSIMYEVAVQMVEIYNEQVRDLLT 648 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~G~~~~----~~~~~GIipRal~~LF~~~~~~----~~~~~~~V~vS~lEIYnE~V~DLL~ 648 (899)
||+||||||||||||||||+|+... ...++||+||++++||..++.. .....|.|++||+|||||+|+|||+
T Consensus 74 ~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~ 153 (337)
T cd01373 74 YNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLD 153 (337)
T ss_pred CceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCC
Confidence 9999999999999999999997643 2357899999999999877543 3456899999999999999999998
Q ss_pred CcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEee
Q 042277 649 NDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGK 728 (899)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~ 728 (899)
+.... ..+.++..+|++|+|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|...
T Consensus 154 ~~~~~------------l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 221 (337)
T cd01373 154 PTSRN------------LKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESW 221 (337)
T ss_pred CCCCC------------ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEe
Confidence 75321 124456678999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCC--CceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHcc----CCCCCCCCCChhhHhhhhh
Q 042277 729 DLKTG--IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ----KSPHVPYRNSKLTQVLQSS 802 (899)
Q Consensus 729 ~~~~~--~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~----k~~hVPYRdSKLT~LLqds 802 (899)
+...+ ....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||||+
T Consensus 222 ~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~ds 301 (337)
T cd01373 222 EKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDS 301 (337)
T ss_pred ecCCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHh
Confidence 54433 35679999999999999999999999999999999999999999999984 4689999999999999999
Q ss_pred cCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCc
Q 042277 803 LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 803 LGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v 838 (899)
|||||+|+|||||||+..+++||++||+||+||+.|
T Consensus 302 Lggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 302 LGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred cCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999876
No 8
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.5e-79 Score=682.19 Aligned_cols=328 Identities=38% Similarity=0.603 Sum_probs=294.4
Q ss_pred CCCEEEEEecCCCCCCCCCCCc-eEEE-EccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHc
Q 042277 499 KGNIRVYCRIRPFLPGQTKKQT-TIEY-IGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLD 575 (899)
Q Consensus 499 kGnIrV~~RVRP~~~~E~~~~~-~v~~-~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLd 575 (899)
-++|+|+||+||.+..|...++ .+.. .+....+.+... ...+.|.||+||+|+++|++||+. +.|+|++||.
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~-----~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~ 80 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT-----KETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL 80 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc-----cccccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence 5799999999999877754332 2222 221334544322 123789999999999999999998 5999999999
Q ss_pred CCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhh
Q 042277 576 GYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWIL 655 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 655 (899)
|||+||||||||||||||||.|... ++...||+||++++||..+........|.|.|||||||+|+|+|||++...+
T Consensus 81 GYNGTvfaYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~n-- 157 (607)
T KOG0240|consen 81 GYNGTVFAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTN-- 157 (607)
T ss_pred ccceeEEEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCC--
Confidence 9999999999999999999999764 4556799999999999999988888999999999999999999999976533
Q ss_pred hhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCCc
Q 042277 656 AICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIP 735 (899)
Q Consensus 656 ~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~ 735 (899)
-.+.++...+++|+|+++..|.+++++++.++.|..+|+++.|.||.+|||||+||+|+|.+.+..+...
T Consensus 158 ----------lsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~ 227 (607)
T KOG0240|consen 158 ----------LSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRK 227 (607)
T ss_pred ----------ceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhh
Confidence 1234556788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC-CCCCCCCCChhhHhhhhhcCCCcceEEEEE
Q 042277 736 LHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK-SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQ 814 (899)
Q Consensus 736 ~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ 814 (899)
+.|+|+||||||||+++++++.|.-+.||.+||+||+|||+||+|||.+ ..|||||||||||+|||||||||+|.+|+|
T Consensus 228 ~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~ 307 (607)
T KOG0240|consen 228 LSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIIC 307 (607)
T ss_pred ccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEe
Confidence 9999999999999999999999999999999999999999999999987 789999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcCccccccc
Q 042277 815 LNPDVNSYSESLSTLKFAERVSGVELGAAR 844 (899)
Q Consensus 815 ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~ 844 (899)
++|+.-+..||.+||+|+.|++.|++.+..
T Consensus 308 csPss~n~~ET~STl~fg~rak~ikN~v~~ 337 (607)
T KOG0240|consen 308 CSPSSLNEAETKSTLRFGNRAKTIKNTVWV 337 (607)
T ss_pred cCCccccccccccchhhccccccccchhhh
Confidence 999999999999999999999999987654
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-77 Score=707.41 Aligned_cols=351 Identities=39% Similarity=0.612 Sum_probs=297.3
Q ss_pred CCEEEEEecCCCCCCCCCCCceEEEEccCC-eEEecC-CCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHcC
Q 042277 500 GNIRVYCRIRPFLPGQTKKQTTIEYIGENG-ELIFGN-PSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLDG 576 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~~~~~v~~~~~~~-~v~i~~-p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG 576 (899)
.+|.|++||||+.+.+...+....+...++ .+.... +..........|.||+||+++++|++||+. ++|+|.+|+.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 589999999999988544333332222222 322222 111111125789999999999999999998 79999999999
Q ss_pred CCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhhh
Q 042277 577 YNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILA 656 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~ 656 (899)
||++|||||||||||||||.|. +.+|||+|+|+.+||..+.... .+.|.|.|||+|||||.|+|||+++...
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~----~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~--- 157 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGS----EDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGD--- 157 (675)
T ss_pred cccceeeecCCCCCCceEEecc----CCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCC---
Confidence 9999999999999999999994 5679999999999999998766 7899999999999999999999987542
Q ss_pred hhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCCce
Q 042277 657 ICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIPL 736 (899)
Q Consensus 657 ~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~~ 736 (899)
..+.++..+|++|+|+++.+|.|+++++.+|..|.++|+++.|.+|..|||||+||+|.|......... .
T Consensus 158 ---------L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~ 227 (675)
T KOG0242|consen 158 ---------LRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-R 227 (675)
T ss_pred ---------ceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-h
Confidence 245667778999999999999999999999999999999999999999999999999999887654442 7
Q ss_pred eeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC--CCCCCCCCChhhHhhhhhcCCCcceEEEEE
Q 042277 737 HGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK--SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQ 814 (899)
Q Consensus 737 ~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k--~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ 814 (899)
.|+|+|||||||||+.++++.|.|++|+.+||+||.+||+||.+|+++ ..||||||||||||||++|||||+|.||||
T Consensus 228 ~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~t 307 (675)
T KOG0242|consen 228 VSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIAT 307 (675)
T ss_pred hheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEE
Confidence 789999999999999999999999999999999999999999999976 569999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcCccccccccCc--chhhHHHHHHHHHHHHHHHHH
Q 042277 815 LNPDVNSYSESLSTLKFAERVSGVELGAARSSK--EGRDVRELMEQVASLKDTIAK 868 (899)
Q Consensus 815 ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~--~~~~~~~L~eqv~~Lk~~i~~ 868 (899)
|+|+..+++||.+||+||+|++.|.+.+..+.. +...+..++.++..|+.++..
T Consensus 308 isp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~ 363 (675)
T KOG0242|consen 308 ISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELER 363 (675)
T ss_pred eCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998866522 222333344455555555543
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=8.1e-76 Score=654.77 Aligned_cols=319 Identities=39% Similarity=0.581 Sum_probs=280.0
Q ss_pred CEEEEEecCCCCCCCCC--CCceEEEEccCCeEEecCCCCC--------CCCCceeEEeceeeCCCCChhhHHhch-HHH
Q 042277 501 NIRVYCRIRPFLPGQTK--KQTTIEYIGENGELIFGNPSKP--------GKDGQRMFKFNKVFGPDATQAEVFSDT-QPL 569 (899)
Q Consensus 501 nIrV~~RVRP~~~~E~~--~~~~v~~~~~~~~v~i~~p~~~--------~~~~~k~F~FD~VF~~~atQeeVF~~v-~pL 569 (899)
+|+|||||||+.+.|.. ...++.+. ++..+.+..|... +....+.|.||+||+++++|++||+.+ .|+
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVI-NSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEc-CCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 79999999999988754 34556554 4557777766431 223567899999999999999999985 999
Q ss_pred HHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccC
Q 042277 570 IRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTN 649 (899)
Q Consensus 570 V~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~ 649 (899)
|+++++|||+||||||||||||||||+|++ .++||+||++++||+.+.. |.|.|||+|||||+|+|||++
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~----~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSP----GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCC
Confidence 999999999999999999999999999964 6889999999999998765 999999999999999999987
Q ss_pred cchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeec
Q 042277 650 DVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKD 729 (899)
Q Consensus 650 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~ 729 (899)
..... ..... ..+..+..++++|.|++++.|.|++|++.+|..|.++|.+++|.+|.+|||||+||+|+|.+.+
T Consensus 151 ~~~~~-----~~~~~-l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~ 224 (345)
T cd01368 151 SPSST-----KKRQS-LRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAP 224 (345)
T ss_pred ccccc-----cCCCc-eEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEec
Confidence 65320 00111 2334556689999999999999999999999999999999999999999999999999998765
Q ss_pred CCC--------CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHcc------CCCCCCCCCChh
Q 042277 730 LKT--------GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ------KSPHVPYRNSKL 795 (899)
Q Consensus 730 ~~~--------~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~------k~~hVPYRdSKL 795 (899)
... .....|+|+|||||||||..++++.|++++|+.+||+||++|++||.+|++ +..|||||+|||
T Consensus 225 ~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkL 304 (345)
T cd01368 225 GDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKL 304 (345)
T ss_pred cCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHH
Confidence 432 446789999999999999999999999999999999999999999999986 568999999999
Q ss_pred hHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 042277 796 TQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVS 836 (899)
Q Consensus 796 T~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k 836 (899)
|+||+|+|||||+|+||+||||+..+++||++||+||.+++
T Consensus 305 T~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 305 THLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999974
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=5.1e-75 Score=651.19 Aligned_cols=330 Identities=39% Similarity=0.601 Sum_probs=289.7
Q ss_pred CCEEEEEecCCCCCCCCCCCc--eEEEEccCCeEEecCCCCCC--CCCceeEEeceeeCCC-------CChhhHHhch-H
Q 042277 500 GNIRVYCRIRPFLPGQTKKQT--TIEYIGENGELIFGNPSKPG--KDGQRMFKFNKVFGPD-------ATQAEVFSDT-Q 567 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~~~~--~v~~~~~~~~v~i~~p~~~~--~~~~k~F~FD~VF~~~-------atQeeVF~~v-~ 567 (899)
+||+|||||||+...|...+. ++.+. +..+.+.+|.... ....+.|.||+||++. ++|++||+.+ .
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~--~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMP--GKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEEC--CCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 689999999999988765433 34333 3678887775311 2346789999999999 9999999985 8
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCC-CeeEEEEEEEEEEeccccccc
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRS-SIMYEVAVQMVEIYNEQVRDL 646 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DL 646 (899)
|+|+++++|||+||||||||||||||||+|+. .++||+||++++||+.+..... ...|.|.+||+|||||+|+||
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~----~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DL 154 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYK----EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDL 154 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeC
Confidence 99999999999999999999999999999964 4789999999999998876544 678999999999999999999
Q ss_pred ccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEE
Q 042277 647 LTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVR 726 (899)
Q Consensus 647 L~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~ 726 (899)
|++.... .....+.++...|++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.
T Consensus 155 L~~~~~~---------~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~ 225 (356)
T cd01365 155 LNPKKKN---------KGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLT 225 (356)
T ss_pred CCCCccC---------CcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEE
Confidence 9876411 0111234556689999999999999999999999999999999999999999999999999998
Q ss_pred eecCC----CCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC--------CCCCCCCCCh
Q 042277 727 GKDLK----TGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK--------SPHVPYRNSK 794 (899)
Q Consensus 727 ~~~~~----~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k--------~~hVPYRdSK 794 (899)
+.+.. ......|+|+|||||||||..+++..|++++|+.+||+||++|++||.+|+.. +.|||||+||
T Consensus 226 ~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~Sk 305 (356)
T cd01365 226 QKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSV 305 (356)
T ss_pred EEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcH
Confidence 87544 44567899999999999999999999999999999999999999999999853 5899999999
Q ss_pred hhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccc
Q 042277 795 LTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAAR 844 (899)
Q Consensus 795 LT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~ 844 (899)
||+||+|+|||+|+|+||+||||...+++||++||+||+|++.|++.|..
T Consensus 306 LT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 306 LTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred HHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 99999999999999999999999999999999999999999999988753
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7.2e-75 Score=641.74 Aligned_cols=315 Identities=37% Similarity=0.519 Sum_probs=278.9
Q ss_pred CCEEEEEecCCCCCCCCCCC-ceEEEEccCCeEEecCCCCC--C--CCCceeEEeceeeCCCCChhhHHhc-hHHHHHHH
Q 042277 500 GNIRVYCRIRPFLPGQTKKQ-TTIEYIGENGELIFGNPSKP--G--KDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSV 573 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~~~-~~v~~~~~~~~v~i~~p~~~--~--~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~sv 573 (899)
++|+|||||||+.+.|...+ ..+....+++.+.+..|... + ....+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999886433 23333444457777655321 1 1125789999999999999999998 59999999
Q ss_pred HcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchh
Q 042277 574 LDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFW 653 (899)
Q Consensus 574 LdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~ 653 (899)
++|||+||||||||||||||||+|+. .++||+||++++||+.++... ..|.|++||+|||||+|+|||++...
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~----~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~~~- 153 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDE----NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDRKR- 153 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcC----CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCccc-
Confidence 99999999999999999999999964 678999999999999887654 67999999999999999999987321
Q ss_pred hhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCC
Q 042277 654 ILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTG 733 (899)
Q Consensus 654 ~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~ 733 (899)
..+.++..++++|.|+++++|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+.
T Consensus 154 ------------l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--- 218 (322)
T cd01367 154 ------------LSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL--- 218 (322)
T ss_pred ------------eeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---
Confidence 13455677899999999999999999999999999999999999999999999999999987764
Q ss_pred CceeeEEEEEecCCCCCccccc-chhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcceEEE
Q 042277 734 IPLHGNLHLVDLAGSERVDRSE-ATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMF 812 (899)
Q Consensus 734 ~~~~skL~lVDLAGSEr~~ks~-~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnskT~mI 812 (899)
....|+|+|||||||||...+. ..+++++|+.+||+||++|++||.+|++++.||||||||||+||+|+|||||+|+||
T Consensus 219 ~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I 298 (322)
T cd01367 219 NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMI 298 (322)
T ss_pred CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEE
Confidence 4578999999999999988765 568999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhc
Q 042277 813 VQLNPDVNSYSESLSTLKFAERVS 836 (899)
Q Consensus 813 ~~ISP~~~~~~ETlsTL~FA~R~k 836 (899)
+||||+..+++||++||+||+|++
T Consensus 299 ~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 299 ATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred EEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999985
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4e-74 Score=638.55 Aligned_cols=326 Identities=42% Similarity=0.668 Sum_probs=290.8
Q ss_pred CCEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHcC
Q 042277 500 GNIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLDG 576 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG 576 (899)
.||+|+|||||+++.|... ..++....+++.+.+.+|........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 3899999999999887653 34566666777888877765445567899999999999999999998 59999999999
Q ss_pred CCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhhh
Q 042277 577 YNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILA 656 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~ 656 (899)
||+||||||||||||||||+|+.. ...++|||||++++||..+..... ..|.|.|||+|||||+|+|||++....
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~~--- 155 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVRE-PPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQKK--- 155 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCC-cccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCCCC---
Confidence 999999999999999999999653 345899999999999998876544 689999999999999999999876421
Q ss_pred hhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCC---CC
Q 042277 657 ICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLK---TG 733 (899)
Q Consensus 657 ~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~---~~ 733 (899)
.. .+.+++.+|++|.|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|...+.. .+
T Consensus 156 -------~l-~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~ 227 (333)
T cd01371 156 -------KL-ELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGEN 227 (333)
T ss_pred -------ce-eEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCC
Confidence 11 23455667999999999999999999999999999999999999999999999999999887653 34
Q ss_pred CceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCC-CCCCCCChhhHhhhhhcCCCcceEEE
Q 042277 734 IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSP-HVPYRNSKLTQVLQSSLGGQAKTLMF 812 (899)
Q Consensus 734 ~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~-hVPYRdSKLT~LLqdsLGGnskT~mI 812 (899)
....|+|+|||||||||..+++..|++++|+..||+||.+|++||.+|+.+.. |||||+||||+||+|+|||||+|+||
T Consensus 228 ~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I 307 (333)
T cd01371 228 HIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMC 307 (333)
T ss_pred cEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEE
Confidence 46689999999999999999999999999999999999999999999998775 99999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhcCc
Q 042277 813 VQLNPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 813 ~~ISP~~~~~~ETlsTL~FA~R~k~v 838 (899)
+||+|...+++||++||+||+|++.|
T Consensus 308 ~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 308 ANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999876
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=5.6e-74 Score=641.91 Aligned_cols=334 Identities=39% Similarity=0.608 Sum_probs=292.7
Q ss_pred CCEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHcC
Q 042277 500 GNIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLDG 576 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdG 576 (899)
+||+|+|||||+.+.|... ..++...+++.++.+.++.. .....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 5999999999999888643 34555555556777766532 23456789999999999999999998 59999999999
Q ss_pred CCeeEeeccccCCcccceeecCCCC-------CCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccC
Q 042277 577 YNVCIFAYGQTGSGKTYTMSGPSGP-------HEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTN 649 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~G~~~~-------~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~ 649 (899)
||+||||||||||||||||+|+... ....+||+||++.+||+.+... ...|.|.+||+|||||+|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997543 2457899999999999988765 567999999999999999999987
Q ss_pred cchhhhhhhhcccccccceecc--CCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEe
Q 042277 650 DVFWILAICFLDLHTLGIMSTS--QPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRG 727 (899)
Q Consensus 650 ~~~~~~~~~~~~~~~~~i~~~~--~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~ 727 (899)
.... ...+ .+.++ ..+|++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|..
T Consensus 159 ~~~~--------~~~l-~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~ 229 (352)
T cd01364 159 ESDL--------NKPL-RIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHI 229 (352)
T ss_pred cccc--------Cccc-eEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEE
Confidence 6411 0111 23333 46899999999999999999999999999999999999999999999999999987
Q ss_pred ecCCC---CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcC
Q 042277 728 KDLKT---GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLG 804 (899)
Q Consensus 728 ~~~~~---~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLG 804 (899)
.+... .....|+|+||||||||+..++++.+.+++|+..||+||.+|++||.+|+.++.|||||+||||+||+|+||
T Consensus 230 ~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lg 309 (352)
T cd01364 230 KETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLG 309 (352)
T ss_pred eccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcC
Confidence 65432 234579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcccccccc
Q 042277 805 GQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARS 845 (899)
Q Consensus 805 GnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~ 845 (899)
|||+|+||+||||+..+++||++||+||+|+++|.+.|..+
T Consensus 310 g~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n 350 (352)
T cd01364 310 GRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVN 350 (352)
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999988654
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=6.2e-74 Score=633.58 Aligned_cols=314 Identities=36% Similarity=0.591 Sum_probs=282.8
Q ss_pred CEEEEEecCCCCCCCCCCCceEEEEccC----CeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHc
Q 042277 501 NIRVYCRIRPFLPGQTKKQTTIEYIGEN----GELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLD 575 (899)
Q Consensus 501 nIrV~~RVRP~~~~E~~~~~~v~~~~~~----~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLd 575 (899)
||+|||||||+.+.|.....++...+.+ ..+.+.+|.. ....+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~--~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRN--RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCC--CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 7999999999999887666777776553 2667766642 2346789999999999999999998 6999999999
Q ss_pred CCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhh
Q 042277 576 GYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWIL 655 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 655 (899)
|||+||||||||||||||||+|++ .++||+||++++||+.++.. .+.|.|.+||+|||||.|+|||++....
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~----~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~~-- 150 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDP----NEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAKKE-- 150 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCc----CccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCCCC--
Confidence 999999999999999999999964 47899999999999977554 3679999999999999999999875321
Q ss_pred hhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCCc
Q 042277 656 AICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIP 735 (899)
Q Consensus 656 ~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~ 735 (899)
. .+.++..++++|.|+++++|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+. ...
T Consensus 151 ---------l-~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~ 218 (319)
T cd01376 151 ---------L-PIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQ 218 (319)
T ss_pred ---------c-eEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--Cce
Confidence 1 2345567889999999999999999999999999999999999999999999999999987754 346
Q ss_pred eeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcceEEEEEe
Q 042277 736 LHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQL 815 (899)
Q Consensus 736 ~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnskT~mI~~I 815 (899)
..|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||
T Consensus 219 ~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~v 298 (319)
T cd01376 219 LEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANI 298 (319)
T ss_pred EEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc
Q 042277 816 NPDVNSYSESLSTLKFAERVS 836 (899)
Q Consensus 816 SP~~~~~~ETlsTL~FA~R~k 836 (899)
||...+++||++||+||+|++
T Consensus 299 sp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 299 APERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999985
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.1e-73 Score=632.90 Aligned_cols=320 Identities=41% Similarity=0.670 Sum_probs=289.6
Q ss_pred CCEEEEEecCCCCCCCCC--CCceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhch-HHHHHHHHcC
Q 042277 500 GNIRVYCRIRPFLPGQTK--KQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDT-QPLIRSVLDG 576 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~--~~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLdG 576 (899)
.+|+|+|||||+.+.|.. ...++.+ .++..+.+.++ ...+.|.||+||+++++|++||+.+ +|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~-~~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G 75 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKF-PGEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNG 75 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEE-cCCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 489999999999988743 2344444 44457777654 2457899999999999999999984 9999999999
Q ss_pred CCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhhh
Q 042277 577 YNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILA 656 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~ 656 (899)
||+||||||||||||||||+|+... ..++||+||++++||+.+........|.|++||+|||||.++|||++....
T Consensus 76 ~n~~i~ayG~tgSGKT~Tm~G~~~~-~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~--- 151 (325)
T cd01369 76 YNGTIFAYGQTGSGKTYTMEGPPGD-PELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDN--- 151 (325)
T ss_pred ccceEEEeCCCCCCceEEecCCCCc-cccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCC---
Confidence 9999999999999999999997643 457899999999999998887777889999999999999999999876321
Q ss_pred hhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCCce
Q 042277 657 ICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIPL 736 (899)
Q Consensus 657 ~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~~ 736 (899)
..+.++..+|++|+|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+.+..++...
T Consensus 152 ---------l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~ 222 (325)
T cd01369 152 ---------LQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKK 222 (325)
T ss_pred ---------ceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEE
Confidence 12345667899999999999999999999999999999999999999999999999999999888777888
Q ss_pred eeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC-CCCCCCCChhhHhhhhhcCCCcceEEEEEe
Q 042277 737 HGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS-PHVPYRNSKLTQVLQSSLGGQAKTLMFVQL 815 (899)
Q Consensus 737 ~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~-~hVPYRdSKLT~LLqdsLGGnskT~mI~~I 815 (899)
.|+|+||||||||+..++++.|.+++|+..||+||++|++||.+|+++. .|||||+||||+||+|+|||+|+|+||+||
T Consensus 223 ~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~v 302 (325)
T cd01369 223 RGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICC 302 (325)
T ss_pred EEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEe
Confidence 9999999999999999999999999999999999999999999999887 999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCc
Q 042277 816 NPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 816 SP~~~~~~ETlsTL~FA~R~k~v 838 (899)
||+..+++||++||+||+|+++|
T Consensus 303 sp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 303 SPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred CCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999876
No 17
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=4.1e-73 Score=629.38 Aligned_cols=326 Identities=52% Similarity=0.836 Sum_probs=293.1
Q ss_pred CCCEEEEEecCCCCCCCCCC-CceEEEEccC-CeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhchHHHHHHHHcC
Q 042277 499 KGNIRVYCRIRPFLPGQTKK-QTTIEYIGEN-GELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDG 576 (899)
Q Consensus 499 kGnIrV~~RVRP~~~~E~~~-~~~v~~~~~~-~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdG 576 (899)
+|+|+|||||||+.+.+... ..++.+.+++ ..+.+.++ ....+.|.||+||+++++|++||+.++|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 69999999999999887643 3455555554 55665543 234678999999999999999999999999999999
Q ss_pred CCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCC-CeeEEEEEEEEEEecccccccccCcchhhh
Q 042277 577 YNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRS-SIMYEVAVQMVEIYNEQVRDLLTNDVFWIL 655 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 655 (899)
+|+||||||||||||||||+|+. .++||+||++++||..++.... ++.|.|.+||+|||||+|+|||++....
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~----~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~-- 150 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPP----ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAP-- 150 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCC----CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCC--
Confidence 99999999999999999999964 6789999999999998877654 7889999999999999999999976311
Q ss_pred hhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCCc
Q 042277 656 AICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIP 735 (899)
Q Consensus 656 ~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~ 735 (899)
.....+..+..+++++.|++++.|.|++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+..++..
T Consensus 151 -------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~ 223 (329)
T cd01366 151 -------KKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQ 223 (329)
T ss_pred -------CCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcE
Confidence 1111234455789999999999999999999999999999999999999999999999999999988877888
Q ss_pred eeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcceEEEEEe
Q 042277 736 LHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQL 815 (899)
Q Consensus 736 ~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnskT~mI~~I 815 (899)
..|+|+||||||||+..+.++.|.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||
T Consensus 224 ~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~v 303 (329)
T cd01366 224 TRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNI 303 (329)
T ss_pred EEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCcccc
Q 042277 816 NPDVNSYSESLSTLKFAERVSGVELG 841 (899)
Q Consensus 816 SP~~~~~~ETlsTL~FA~R~k~v~~~ 841 (899)
||...+++||++||+||+|++.|++|
T Consensus 304 sp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 304 SPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred CCchhhHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999865
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.3e-73 Score=629.47 Aligned_cols=315 Identities=39% Similarity=0.623 Sum_probs=283.4
Q ss_pred CEEEEEecCCCCCCCCCCCceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHcCCCe
Q 042277 501 NIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLDGYNV 579 (899)
Q Consensus 501 nIrV~~RVRP~~~~E~~~~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdGyN~ 579 (899)
||+|||||||+.+.|.....++..+.+++.+++..+ ...+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 699999999999887754444444555557777654 346899999999999999999998 59999999999999
Q ss_pred eEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhhhhhh
Q 042277 580 CIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICF 659 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~ 659 (899)
||||||||||||||||+|+. .++||+||++++||..+.... ...|.|++||+|||||+|+|||++....
T Consensus 76 ~i~ayG~tgSGKT~T~~G~~----~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~------ 144 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGDE----QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSPQE------ 144 (321)
T ss_pred eEEeecCCCCCCceeccCCC----CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCCCC------
Confidence 99999999999999999964 678999999999999886654 5689999999999999999999887421
Q ss_pred cccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCC---CCce
Q 042277 660 LDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKT---GIPL 736 (899)
Q Consensus 660 ~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~---~~~~ 736 (899)
..+.++...|++++|++++.|.|++|+..+|..|.++|.+++|.+|.+|||||+||+|+|.+.+... +...
T Consensus 145 ------l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~ 218 (321)
T cd01374 145 ------LRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVR 218 (321)
T ss_pred ------ceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEE
Confidence 1244556679999999999999999999999999999999999999999999999999999877554 5677
Q ss_pred eeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC--CCCCCCCChhhHhhhhhcCCCcceEEEEE
Q 042277 737 HGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS--PHVPYRNSKLTQVLQSSLGGQAKTLMFVQ 814 (899)
Q Consensus 737 ~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~--~hVPYRdSKLT~LLqdsLGGnskT~mI~~ 814 (899)
.|+|+|||||||||..+.+ .+.+++|+.+||+||.+|++||.+|+.++ .|||||+||||+||+|+|||+|+|+||+|
T Consensus 219 ~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~ 297 (321)
T cd01374 219 VSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICT 297 (321)
T ss_pred EEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEE
Confidence 8999999999999999988 89999999999999999999999999885 99999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcCc
Q 042277 815 LNPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 815 ISP~~~~~~ETlsTL~FA~R~k~v 838 (899)
|||...+++||++||+||+|+++|
T Consensus 298 vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 298 ISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred eCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999875
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.4e-73 Score=632.90 Aligned_cols=322 Identities=37% Similarity=0.639 Sum_probs=287.7
Q ss_pred CEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHcCC
Q 042277 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLDGY 577 (899)
Q Consensus 501 nIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdGy 577 (899)
+|+|||||||+.+.|... ..++.+.+.+..+++.+ .+.|.||+||+++++|++||+. ++|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999887644 34666666665666543 4689999999999999999998 589999999999
Q ss_pred CeeEeeccccCCcccceeecCCCC--CCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhh
Q 042277 578 NVCIFAYGQTGSGKTYTMSGPSGP--HEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWIL 655 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~G~~~~--~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 655 (899)
|+||||||||||||||||+|+... ...++|||||++++||..++.......|.|.|||+|||||+|+|||.+....
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~-- 151 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSE-- 151 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccC--
Confidence 999999999999999999997532 3568999999999999999887777899999999999999999999876410
Q ss_pred hhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCC----
Q 042277 656 AICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLK---- 731 (899)
Q Consensus 656 ~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~---- 731 (899)
.....+.++..++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+..
T Consensus 152 -------~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~ 224 (341)
T cd01372 152 -------KSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIA 224 (341)
T ss_pred -------CCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccc
Confidence 111234456678999999999999999999999999999999999999999999999999999887663
Q ss_pred ------CCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC---CCCCCCCChhhHhhhhh
Q 042277 732 ------TGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS---PHVPYRNSKLTQVLQSS 802 (899)
Q Consensus 732 ------~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~---~hVPYRdSKLT~LLqds 802 (899)
......|+|+||||||||+..++++.|++++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+
T Consensus 225 ~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~ 304 (341)
T cd01372 225 PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDS 304 (341)
T ss_pred cccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHh
Confidence 345678999999999999999999999999999999999999999999999876 79999999999999999
Q ss_pred cCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcc
Q 042277 803 LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVE 839 (899)
Q Consensus 803 LGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~ 839 (899)
|||+|+|+||+||||...+++||++||+||+|+++|+
T Consensus 305 Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 305 LGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred cCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999885
No 20
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.5e-74 Score=653.62 Aligned_cols=354 Identities=39% Similarity=0.578 Sum_probs=305.2
Q ss_pred CCCEEEEEecCCCCCCCCCCCc--eEEEEccCCeEEecCCCCC----CCCCceeEEeceeeCCC-------CChhhHHhc
Q 042277 499 KGNIRVYCRIRPFLPGQTKKQT--TIEYIGENGELIFGNPSKP----GKDGQRMFKFNKVFGPD-------ATQAEVFSD 565 (899)
Q Consensus 499 kGnIrV~~RVRP~~~~E~~~~~--~v~~~~~~~~v~i~~p~~~----~~~~~k~F~FD~VF~~~-------atQeeVF~~ 565 (899)
..+|||.+||||++.+|.+... .+.+.. + ..++..|++. ...++++|.||++|.+. +.|+.||..
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~-~-q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~ 80 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDK-N-QTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKC 80 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEecc-C-ceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHh
Confidence 3589999999999999976543 333333 2 3444444221 12568999999999864 789999999
Q ss_pred h-HHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhc-cCCCeeEEEEEEEEEEecccc
Q 042277 566 T-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQN-RRSSIMYEVAVQMVEIYNEQV 643 (899)
Q Consensus 566 v-~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~V 643 (899)
+ .-+|+++|+|||+||||||||||||||||+|. .+.+|||||.+..||..++. ......|.|.|||+|||||++
T Consensus 81 lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt----~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv 156 (1714)
T KOG0241|consen 81 LGEGILENAFQGYNACIFAYGQTGSGKSYSMMGT----AEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKV 156 (1714)
T ss_pred cchHHHHHHhhccceeeEEecccCCCceeEeecc----CCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcch
Confidence 7 66889999999999999999999999999994 57899999999999997765 456778999999999999999
Q ss_pred cccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEE
Q 042277 644 RDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTV 723 (899)
Q Consensus 644 ~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI 723 (899)
||||+|.... ......++.--|.+|.||+...|.|++|+..+|..|+++|++++|+||..|||||+||.|
T Consensus 157 ~DLLdPk~ss----------qtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFsl 226 (1714)
T KOG0241|consen 157 RDLLDPKGSS----------QTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSL 226 (1714)
T ss_pred hhhhCCCCCc----------ceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEE
Confidence 9999987642 112334556689999999999999999999999999999999999999999999999999
Q ss_pred EEEee--cCCCCC--ceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC------CCCCCCCCC
Q 042277 724 HVRGK--DLKTGI--PLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK------SPHVPYRNS 793 (899)
Q Consensus 724 ~v~~~--~~~~~~--~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k------~~hVPYRdS 793 (899)
.|.+. +..++. ...|+|.|||||||||+.++++.|+|++|+.+||+||++||.||+||+.+ +++||||||
T Consensus 227 vvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDS 306 (1714)
T KOG0241|consen 227 VVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDS 306 (1714)
T ss_pred EEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhH
Confidence 99875 444443 45799999999999999999999999999999999999999999999852 469999999
Q ss_pred hhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccCcc-hhhHHHHHHHHHHHHHHHHH
Q 042277 794 KLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKE-GRDVRELMEQVASLKDTIAK 868 (899)
Q Consensus 794 KLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~~-~~~~~~L~eqv~~Lk~~i~~ 868 (899)
-||+||+|+|||||+|+||+||||+.++|+||++|||||.|++.|.+.+..+.+. .+.+++|++++..|..+|..
T Consensus 307 VLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 307 VLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998876554 45679999999888887765
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.3e-72 Score=626.64 Aligned_cols=324 Identities=41% Similarity=0.615 Sum_probs=281.9
Q ss_pred CEEEEEecCCCCCCCCCCCceEEEEccCCeEEecCCCCC------CCCCceeEEeceeeCCCCChhhHHhch-HHHHHHH
Q 042277 501 NIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKP------GKDGQRMFKFNKVFGPDATQAEVFSDT-QPLIRSV 573 (899)
Q Consensus 501 nIrV~~RVRP~~~~E~~~~~~v~~~~~~~~v~i~~p~~~------~~~~~k~F~FD~VF~~~atQeeVF~~v-~pLV~sv 573 (899)
.|+|+||+||+...+. ..+.+..++..+.+..|... .....+.|.||+||++ ++|++||+.+ .|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 4899999999987443 24555566666666555321 1224578999999999 9999999985 8999999
Q ss_pred HcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchh
Q 042277 574 LDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFW 653 (899)
Q Consensus 574 LdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~ 653 (899)
++|||+||||||||||||||||+|+.. ...++||+||++++||..++... +..|.|.+||+|||||+|+|||++....
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTE-SYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCC-cccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccc
Confidence 999999999999999999999999764 34678999999999999887654 5579999999999999999999987421
Q ss_pred hhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEee--cCC
Q 042277 654 ILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGK--DLK 731 (899)
Q Consensus 654 ~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~--~~~ 731 (899)
........+.++..++++|.|+++++|.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+. ...
T Consensus 155 ------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~ 228 (334)
T cd01375 155 ------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG 228 (334)
T ss_pred ------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC
Confidence 001111224456678999999999999999999999999999999999999999999999999999987 444
Q ss_pred CCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC-CCCCCCCChhhHhhhhhcCCCcceE
Q 042277 732 TGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS-PHVPYRNSKLTQVLQSSLGGQAKTL 810 (899)
Q Consensus 732 ~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~-~hVPYRdSKLT~LLqdsLGGnskT~ 810 (899)
+.....|+|+|||||||||..++++.+.+++|+..||+||++|++||.+|++++ .||||||||||+||+|+|||+|+|+
T Consensus 229 ~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~ 308 (334)
T cd01375 229 SEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTV 308 (334)
T ss_pred CCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEE
Confidence 556778999999999999999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhc
Q 042277 811 MFVQLNPDVNSYSESLSTLKFAERVS 836 (899)
Q Consensus 811 mI~~ISP~~~~~~ETlsTL~FA~R~k 836 (899)
||+||||+..+++||++||+||+|++
T Consensus 309 ~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 309 MLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999984
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.1e-68 Score=593.04 Aligned_cols=322 Identities=48% Similarity=0.726 Sum_probs=286.0
Q ss_pred CEEEEEecCCCCCCCCCCCceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhch-HHHHHHHHcCCCe
Q 042277 501 NIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDT-QPLIRSVLDGYNV 579 (899)
Q Consensus 501 nIrV~~RVRP~~~~E~~~~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLdGyN~ 579 (899)
+|+|||||||+...+......+..+.+++.+++..|........+.|.||+||+++++|++||+.+ +|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999998877444433333444468888776543344578999999999999999999985 8999999999999
Q ss_pred eEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCC-CeeEEEEEEEEEEecccccccccCcchhhhhhh
Q 042277 580 CIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRS-SIMYEVAVQMVEIYNEQVRDLLTNDVFWILAIC 658 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~ 658 (899)
||||||||||||||||+|+. .++||+||++++||..+..... ...|.|.+||+|||+|+|+|||++...
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~----~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~------ 150 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSP----KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPP------ 150 (328)
T ss_pred eEEEecCCCCCCeEEecCCC----CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCC------
Confidence 99999999999999999954 6789999999999998876543 568999999999999999999998621
Q ss_pred hcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCC--ce
Q 042277 659 FLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGI--PL 736 (899)
Q Consensus 659 ~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~--~~ 736 (899)
.....+.++..+|+++.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|...+..... ..
T Consensus 151 ----~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~ 226 (328)
T cd00106 151 ----SKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIK 226 (328)
T ss_pred ----CCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEE
Confidence 011233455558999999999999999999999999999999999999999999999999999988776554 78
Q ss_pred eeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC--CCCCCCCChhhHhhhhhcCCCcceEEEEE
Q 042277 737 HGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS--PHVPYRNSKLTQVLQSSLGGQAKTLMFVQ 814 (899)
Q Consensus 737 ~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~--~hVPYRdSKLT~LLqdsLGGnskT~mI~~ 814 (899)
.|+|+||||||||+..+.+..+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+|
T Consensus 227 ~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~ 306 (328)
T cd00106 227 SSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIAN 306 (328)
T ss_pred EEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEE
Confidence 9999999999999999999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhc
Q 042277 815 LNPDVNSYSESLSTLKFAERVS 836 (899)
Q Consensus 815 ISP~~~~~~ETlsTL~FA~R~k 836 (899)
|||...+++||++||+||+|++
T Consensus 307 vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 307 ISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred eCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999985
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.6e-68 Score=593.76 Aligned_cols=326 Identities=46% Similarity=0.713 Sum_probs=291.9
Q ss_pred CEEEEEecCCCCCCCCC--CCceEEEEccCC-eEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhch-HHHHHHHHcC
Q 042277 501 NIRVYCRIRPFLPGQTK--KQTTIEYIGENG-ELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDT-QPLIRSVLDG 576 (899)
Q Consensus 501 nIrV~~RVRP~~~~E~~--~~~~v~~~~~~~-~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLdG 576 (899)
+|+|+|||||+...|.. ...++.+.++++ .+.+.++. .....+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK--NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC--CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 69999999999887754 345666655543 56665543 234568899999999999999999985 8999999999
Q ss_pred CCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhhh
Q 042277 577 YNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILA 656 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~ 656 (899)
+|+||||||+|||||||||+|+. .++||+||++++||..+........|.|++||+|||+|+|+|||++...
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~----~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~---- 150 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTP----DSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPK---- 150 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCC----CCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCC----
Confidence 99999999999999999999954 5689999999999998877776788999999999999999999987532
Q ss_pred hhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEee--cCCCCC
Q 042277 657 ICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGK--DLKTGI 734 (899)
Q Consensus 657 ~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~--~~~~~~ 734 (899)
. ..+.++..+|+++.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|+|.+. +.....
T Consensus 151 -------~-l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~ 222 (335)
T smart00129 151 -------K-LEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGS 222 (335)
T ss_pred -------C-cEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCC
Confidence 1 223455667999999999999999999999999999999999999999999999999999966 555667
Q ss_pred ceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHcc--CCCCCCCCCChhhHhhhhhcCCCcceEEE
Q 042277 735 PLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ--KSPHVPYRNSKLTQVLQSSLGGQAKTLMF 812 (899)
Q Consensus 735 ~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~--k~~hVPYRdSKLT~LLqdsLGGnskT~mI 812 (899)
...|+|+||||||+|+..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||
T Consensus 223 ~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i 302 (335)
T smart00129 223 GKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMI 302 (335)
T ss_pred EEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEE
Confidence 7899999999999999999999999999999999999999999999998 67899999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhcCccccccc
Q 042277 813 VQLNPDVNSYSESLSTLKFAERVSGVELGAAR 844 (899)
Q Consensus 813 ~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~ 844 (899)
+||||...+++||++||+||+++++|+++|.+
T Consensus 303 ~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 303 ANISPSLSNLEETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred EEcCCCccchHHHHHHHHHHHHHhhcccCCCc
Confidence 99999999999999999999999999998864
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.5e-68 Score=593.72 Aligned_cols=322 Identities=43% Similarity=0.671 Sum_probs=272.1
Q ss_pred ecCCCCCCCCCCCce--EEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHcCCCeeEee
Q 042277 507 RIRPFLPGQTKKQTT--IEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLDGYNVCIFA 583 (899)
Q Consensus 507 RVRP~~~~E~~~~~~--v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdGyN~cIfA 583 (899)
||||+++.|...... +......................+.|.||+||+++++|++||+. +.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 899999888655433 22221111111111111223456889999999999999999998 599999999999999999
Q ss_pred ccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCC--eeEEEEEEEEEEecccccccccCcchhhhhhhhcc
Q 042277 584 YGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSS--IMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLD 661 (899)
Q Consensus 584 YGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~--~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~ 661 (899)
||||||||||||+|+ ....++||+||++++||..+...... +.|.|+|||+|||||+|+|||++.... .
T Consensus 81 yG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~-------~ 151 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSK-------S 151 (335)
T ss_dssp EESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSS-------T
T ss_pred ecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccc-------c
Confidence 999999999999996 23568999999999999988876654 899999999999999999999987310 0
Q ss_pred cccccceeccCCCc-eeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCC----ce
Q 042277 662 LHTLGIMSTSQPNG-LAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGI----PL 736 (899)
Q Consensus 662 ~~~~~i~~~~~~~g-~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~----~~ 736 (899)
...+ .+.++...| ++|.|+++++|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|.+.+..... ..
T Consensus 152 ~~~l-~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~ 230 (335)
T PF00225_consen 152 RKPL-KIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVK 230 (335)
T ss_dssp TSEB-EEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEE
T ss_pred cccc-ceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccee
Confidence 0111 234444555 99999999999999999999999999999999999999999999999999998776554 47
Q ss_pred eeEEEEEecCCCCCcccccch-hhhHHHHHHhhhhHHHHHHHHHHHccC--CCCCCCCCChhhHhhhhhcCCCcceEEEE
Q 042277 737 HGNLHLVDLAGSERVDRSEAT-GDRLKEAQHINKSLSALGDVIFALAQK--SPHVPYRNSKLTQVLQSSLGGQAKTLMFV 813 (899)
Q Consensus 737 ~skL~lVDLAGSEr~~ks~~~-g~rlkEa~~INkSLsaLg~VI~aLa~k--~~hVPYRdSKLT~LLqdsLGGnskT~mI~ 813 (899)
.|+|+||||||+|+..+..+. +.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+
T Consensus 231 ~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~ 310 (335)
T PF00225_consen 231 HSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIV 310 (335)
T ss_dssp EEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEE
T ss_pred ecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEE
Confidence 899999999999999998864 888999999999999999999999998 89999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhcCc
Q 042277 814 QLNPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 814 ~ISP~~~~~~ETlsTL~FA~R~k~v 838 (899)
||||...+++||++||+||++++.|
T Consensus 311 ~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 311 CVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred EcCCccccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999876
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.3e-65 Score=579.63 Aligned_cols=333 Identities=39% Similarity=0.630 Sum_probs=287.9
Q ss_pred hcCCCEEEEEecCCCCCCCCCCCceEEEEccCCeEEecCCCC-------CCCCCceeEEeceeeCCCCChhhHHhc-hHH
Q 042277 497 DLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSK-------PGKDGQRMFKFNKVFGPDATQAEVFSD-TQP 568 (899)
Q Consensus 497 elkGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~~v~i~~p~~-------~~~~~~k~F~FD~VF~~~atQeeVF~~-v~p 568 (899)
+.+..|.||||+||+.+ ..+...|+.++++. ++++..|.. .+....+.|.|-+||+|+++|.+||+. +.|
T Consensus 28 ~~~d~v~v~~rvrP~~~-~~~~~g~l~v~n~~-tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD-ASEDEGCLRVINEE-TIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCC-CccccceEEEeccc-eeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 35678999999999986 34445677766653 666655521 233456789999999999999999998 599
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhcc-------------------------
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNR------------------------- 623 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~------------------------- 623 (899)
+|.+++.|.|..+|+||-|||||||||+|++ .++||+||+++-||..++.+
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~----~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL 181 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTP----DRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALL 181 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCC----CCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999964 57799999999999876531
Q ss_pred ---------------------------------------CCCeeEEEEEEEEEEecccccccccCcchhhhhhhhccccc
Q 042277 624 ---------------------------------------RSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHT 664 (899)
Q Consensus 624 ---------------------------------------~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~ 664 (899)
..+..|.|+|||+|||||-|||||.+.+.... .+.
T Consensus 182 ~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~------~~~ 255 (809)
T KOG0247|consen 182 QLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGK------LQK 255 (809)
T ss_pred hhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccch------hhh
Confidence 02346999999999999999999987654321 122
Q ss_pred ccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCC--CCCceeeEEEE
Q 042277 665 LGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLK--TGIPLHGNLHL 742 (899)
Q Consensus 665 ~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~--~~~~~~skL~l 742 (899)
..+...+..+..+|.|+++|.|+|.+|++.++..|.++|.+++|.+|..|||||+||+|.+...... .+....|.|.|
T Consensus 256 ~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsL 335 (809)
T KOG0247|consen 256 LKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSL 335 (809)
T ss_pred hhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeee
Confidence 2345667777899999999999999999999999999999999999999999999999999776554 56678899999
Q ss_pred EecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC-----CCCCCCCCChhhHhhhhhcCCCcceEEEEEeCC
Q 042277 743 VDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK-----SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNP 817 (899)
Q Consensus 743 VDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-----~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP 817 (899)
||||||||..++++.|.||+||.+||.||.+||+||.+|..+ +.+|||||||||++++.+|.|..+..|||||+|
T Consensus 336 vDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp 415 (809)
T KOG0247|consen 336 VDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNP 415 (809)
T ss_pred eecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCC
Confidence 999999999999999999999999999999999999999853 469999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCcccc
Q 042277 818 DVNSYSESLSTLKFAERVSGVELG 841 (899)
Q Consensus 818 ~~~~~~ETlsTL~FA~R~k~v~~~ 841 (899)
.+.+|+|+++.|+||+-+..|...
T Consensus 416 ~~e~YdEnl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 416 KAEDYDENLNVLKFAEIAQEVEVA 439 (809)
T ss_pred chhhHHHHHHHHHHHHhccccccc
Confidence 999999999999999999887653
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-63 Score=554.63 Aligned_cols=324 Identities=35% Similarity=0.509 Sum_probs=278.0
Q ss_pred CCEEEEEecCCCCCCCCCCC--ceEEEEccCCeEEecCCCCCCCC-----CceeEEeceeeCCCCChhhHHhc-hHHHHH
Q 042277 500 GNIRVYCRIRPFLPGQTKKQ--TTIEYIGENGELIFGNPSKPGKD-----GQRMFKFNKVFGPDATQAEVFSD-TQPLIR 571 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~~~--~~v~~~~~~~~v~i~~p~~~~~~-----~~k~F~FD~VF~~~atQeeVF~~-v~pLV~ 571 (899)
..|-|+||-||++..|.... ..|.++. .+.+++..|.. ..+ ....|.||++||..++++.||.. ++|||.
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps-~~~l~vHEpk~-kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~ 285 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPS-KNVLVVHEPKL-KVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVK 285 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccc-cceEEeecccc-ccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHH
Confidence 45999999999999887543 3444434 44666665532 222 34679999999999999999997 599999
Q ss_pred HHHcCCCeeEeeccccCCcccceeecCCCCCC--CccchhHHHHHHHHHhhhc-cCCCeeEEEEEEEEEEeccccccccc
Q 042277 572 SVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHE--EDWGVNYRALNDLFNLSQN-RRSSIMYEVAVQMVEIYNEQVRDLLT 648 (899)
Q Consensus 572 svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~--~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~V~DLL~ 648 (899)
.+|+|--+|+||||||||||||||-|...+.. ...||.-++.+|+|..+.. .-....+.|.++|||||+.+|||||+
T Consensus 286 ~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~ 365 (676)
T KOG0246|consen 286 TIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLN 365 (676)
T ss_pred HHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhc
Confidence 99999999999999999999999988654432 3469999999999998765 33456789999999999999999998
Q ss_pred CcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEee
Q 042277 649 NDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGK 728 (899)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~ 728 (899)
.... .-+.++....+.|.|+.+..|.+.++++.+|+.|+.-|+++.|..|..|||||+||+|.+...
T Consensus 366 ~k~K-------------LrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~ 432 (676)
T KOG0246|consen 366 DKKK-------------LRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH 432 (676)
T ss_pred cccc-------------eEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC
Confidence 7432 124556677899999999999999999999999999999999999999999999999999643
Q ss_pred cCCCCCceeeEEEEEecCCCCCc-ccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCC-C
Q 042277 729 DLKTGIPLHGNLHLVDLAGSERV-DRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGG-Q 806 (899)
Q Consensus 729 ~~~~~~~~~skL~lVDLAGSEr~-~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGG-n 806 (899)
. ....+|++.||||||+||. +.+.+..++..|+..|||||+||..||.||.+.+.|+|||.||||++|+|||=| |
T Consensus 433 ~---~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGen 509 (676)
T KOG0246|consen 433 G---EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGEN 509 (676)
T ss_pred C---cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCC
Confidence 2 2568999999999999995 555566778899999999999999999999999999999999999999999988 9
Q ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcccc
Q 042277 807 AKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELG 841 (899)
Q Consensus 807 skT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~ 841 (899)
++|+||+||||...+++.||+|||||.|||.....
T Consensus 510 SrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~ 544 (676)
T KOG0246|consen 510 SRTCMIATISPGISSCEHTLNTLRYADRVKELSVD 544 (676)
T ss_pred CceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999975443
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-64 Score=589.13 Aligned_cols=343 Identities=34% Similarity=0.548 Sum_probs=296.8
Q ss_pred cCCCCCCCCCCC--ceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHcCCCeeEeec
Q 042277 508 IRPFLPGQTKKQ--TTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLDGYNVCIFAY 584 (899)
Q Consensus 508 VRP~~~~E~~~~--~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdGyN~cIfAY 584 (899)
|||+...|...+ .|+.+.+.+.++.+. +...|+||+||++..+|.++|+. |.|+++.+|+|||++++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig--------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG--------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec--------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 689888776543 456656666666653 34689999999999999999997 6999999999999999999
Q ss_pred cccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhhhhhhccccc
Q 042277 585 GQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHT 664 (899)
Q Consensus 585 GQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~ 664 (899)
|||||||||||.+.........|+|||++.++|..+..... ..|.|.|+|+|||+|.|+|||.|+...
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~----------- 140 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLK----------- 140 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhh-----------
Confidence 99999999999886444444469999999999998876554 789999999999999999999855321
Q ss_pred ccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeec-CCCCCceeeEEEEE
Q 042277 665 LGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKD-LKTGIPLHGNLHLV 743 (899)
Q Consensus 665 ~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~-~~~~~~~~skL~lV 743 (899)
..+..+.+.+++.+.|+++++|.+..++...|..|.-.|++++|+||..|||||+||++.+.+.. ......++++|+||
T Consensus 141 ~~i~~~e~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlV 220 (913)
T KOG0244|consen 141 ANIKLREPKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLV 220 (913)
T ss_pred hceeccccCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhhee
Confidence 12333444466999999999999999999999999999999999999999999999999998743 33445678999999
Q ss_pred ecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC--CCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCC
Q 042277 744 DLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS--PHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNS 821 (899)
Q Consensus 744 DLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~--~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~ 821 (899)
|||||||.+++++.|+|++|+.+||.+|++||+||+||.... .|||||+|||||||||+||||+.|+||+||||+..+
T Consensus 221 DLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn 300 (913)
T KOG0244|consen 221 DLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSN 300 (913)
T ss_pred eccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhh
Confidence 999999999999999999999999999999999999998655 499999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccccccC-cchhhHHHHHHHHHHHHHHHHHHH
Q 042277 822 YSESLSTLKFAERVSGVELGAARSS-KEGRDVRELMEQVASLKDTIAKKD 870 (899)
Q Consensus 822 ~~ETlsTL~FA~R~k~v~~~~~~~~-~~~~~~~~L~eqv~~Lk~~i~~~~ 870 (899)
++||++||+||.|++.|++.++.+. .....+..|+.|+..|+.++....
T Consensus 301 ~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 301 AQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred hhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998766 333457777888888887777553
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-59 Score=550.52 Aligned_cols=307 Identities=42% Similarity=0.652 Sum_probs=275.5
Q ss_pred ceeEEeceeeCCCCChhhHHhc-hHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhc
Q 042277 544 QRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQN 622 (899)
Q Consensus 544 ~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~ 622 (899)
...|.||+||+|.++|++||+. +.|+++++++|||+||||||||||||||||.|. ...+||||+++.+||+.+..
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~----~~~~Gii~~~l~~lf~~l~~ 130 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGT----EEEPGIIPLSLKELFSKLED 130 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecC----ccccchHHHHHHHHHHHHHh
Confidence 5679999999999999999998 699999999999999999999999999999994 37889999999999998887
Q ss_pred cCCCeeEEEEEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhc
Q 042277 623 RRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKN 702 (899)
Q Consensus 623 ~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~ 702 (899)
...+..|.|.+||+|||||.++|||.+.... ..+..+...|+.|.++++..+.+.++++.+|..|..+
T Consensus 131 ~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~------------~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~n 198 (568)
T COG5059 131 LSMTKDFAVSISYLEIYNEKIYDLLSPNEES------------LNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKN 198 (568)
T ss_pred cccCcceeeEeehhHHHhhHHHhhccCcccc------------ccccccCCCceEeecceEEecCChHHHHHHHHHhhhh
Confidence 7767789999999999999999999876532 2345667789999999999999999999999999999
Q ss_pred ccccccCCCCCCCCceeEEEEEEEeecCCCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHc
Q 042277 703 RAIGATALNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALA 782 (899)
Q Consensus 703 R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa 782 (899)
|.+++|.+|..|||||++|++++.+.+...+....++|+||||||||++..++..+.|++|+..||+||.+||+||.+|.
T Consensus 199 r~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~ 278 (568)
T COG5059 199 RTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALG 278 (568)
T ss_pred cccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHh
Confidence 99999999999999999999999998877777667899999999999999999999999999999999999999999999
Q ss_pred c--CCCCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccC--cchhhHHHHHHH
Q 042277 783 Q--KSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSS--KEGRDVRELMEQ 858 (899)
Q Consensus 783 ~--k~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~--~~~~~~~~L~eq 858 (899)
. +..|||||+|||||+||++|||+|+|.|||||+|...++++|++||+||.|+++|.+.+..+. .-...+.++..+
T Consensus 279 ~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d 358 (568)
T COG5059 279 DKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFD 358 (568)
T ss_pred ccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhh
Confidence 7 788999999999999999999999999999999999999999999999999999998876653 223334444444
Q ss_pred HHHHHHHH
Q 042277 859 VASLKDTI 866 (899)
Q Consensus 859 v~~Lk~~i 866 (899)
+...++.+
T Consensus 359 ~~~~~~~~ 366 (568)
T COG5059 359 LSEDRSEI 366 (568)
T ss_pred hhhhhhhh
Confidence 44443333
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=6.7e-50 Score=409.91 Aligned_cols=176 Identities=60% Similarity=0.909 Sum_probs=166.8
Q ss_pred HHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecc
Q 042277 562 VFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNE 641 (899)
Q Consensus 562 VF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE 641 (899)
||+.+.|+|+.+++|||+||||||||||||||||+|++ .++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~----~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR----EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCC----CCCCcchHHHHH--------------------------
Confidence 99997799999999999999999999999999999964 678999999988
Q ss_pred cccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEE
Q 042277 642 QVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVV 721 (899)
Q Consensus 642 ~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~If 721 (899)
+++++..|.++|.+++|.+|+.|||||+||
T Consensus 58 --------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~ 87 (186)
T cd01363 58 --------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVF 87 (186)
T ss_pred --------------------------------------------------HHHHHhhccccccccccCCCCccCcccEEE
Confidence 677889999999999999999999999999
Q ss_pred EEEEEeecCCC---CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHh
Q 042277 722 TVHVRGKDLKT---GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQV 798 (899)
Q Consensus 722 tI~v~~~~~~~---~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~L 798 (899)
+|++...+... +....|+|+||||||||+.++++..+++++|+..||+||++|++||.+|++++.|||||+||||+|
T Consensus 88 ~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~l 167 (186)
T cd01363 88 RIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRL 167 (186)
T ss_pred EEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHH
Confidence 99998876654 556789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcceEEEEEeCC
Q 042277 799 LQSSLGGQAKTLMFVQLNP 817 (899)
Q Consensus 799 LqdsLGGnskT~mI~~ISP 817 (899)
|||+|||||+|+||+||||
T Consensus 168 L~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 168 LQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999
No 30
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=99.90 E-value=2.9e-24 Score=216.32 Aligned_cols=106 Identities=25% Similarity=0.458 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCC
Q 042277 26 AKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGI 105 (899)
Q Consensus 26 a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gv 105 (899)
...+.|+++||+.++.. ..+...+|+++|+||+|||+|+|+|+||++++++ .+...|.+||||++|++||+.|||
T Consensus 24 ~~~~~el~~WI~~~~~~----~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~-~s~~~f~qmEnIs~Fi~a~~~ygv 98 (193)
T KOG2046|consen 24 DELEKELREWIENVVLT----ELPARGDFQDLLKDGVILCKLINKLYPGVVKKIN-ESKMAFVQMENISNFIKAAKKYGV 98 (193)
T ss_pred HHHHHHHHHHHHHhhcc----CCCcccCHHHHHcchHHHHHHHHHhCcCcccccc-cccccHHHHHHHHHHHHHHHhcCC
Confidence 45678999999997432 1234678999999999999999999999999998 455668889999999999999999
Q ss_pred Cc---ccccccccCC-cchHHHHHHHHHHHHHhcC
Q 042277 106 SR---FEMSDLEKGS-MKPVINCLLNLRAEYITGG 136 (899)
Q Consensus 106 p~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g 136 (899)
|. |||+||||++ +.+|+.||+||.+++.+++
T Consensus 99 ~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~~ 133 (193)
T KOG2046|consen 99 PEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKKG 133 (193)
T ss_pred ChhhcccccccccCCCHHHHHHHHHHHHHHHhhcc
Confidence 96 9999999999 9999999999999999986
No 31
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.67 E-value=1.1e-16 Score=153.88 Aligned_cols=104 Identities=25% Similarity=0.438 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCC
Q 042277 26 AKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGI 105 (899)
Q Consensus 26 a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gv 105 (899)
.....|+..||+.++|...-| +.||.++|+||++||+++|...||-|+=-. +...|-+||||+.|+.+++++||
T Consensus 12 ~~~~kev~~Wie~~l~~k~~p----pgdll~~lkdGv~lCril~ea~~~~I~yKe--SkmpFVQmenIs~Fin~~~k~~v 85 (178)
T COG5199 12 DKQQKEVTLWIETVLGEKFEP----PGDLLSLLKDGVRLCRILNEASPLDIKYKE--SKMPFVQMENISSFINGLKKLRV 85 (178)
T ss_pred HHHHHHHHHHHHHHHHhhhCC----cccHHHHHhcchHHHHHHhhcCcccceecc--cCCceeeHHHHHHHHHHHHHhCC
Confidence 456789999999999976533 357999999999999999999999864332 23447779999999999999999
Q ss_pred Cc---ccccccccCC-cchHHHHHHHHHHHHHhc
Q 042277 106 SR---FEMSDLEKGS-MKPVINCLLNLRAEYITG 135 (899)
Q Consensus 106 p~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~ 135 (899)
|. |||+||+|.+ ..+|+.||++|.+|+...
T Consensus 86 pe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~ 119 (178)
T COG5199 86 PEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKE 119 (178)
T ss_pred CHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 97 9999999999 999999999999999875
No 32
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.61 E-value=1.2e-15 Score=141.70 Aligned_cols=102 Identities=28% Similarity=0.467 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCCCc
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISR 107 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gvp~ 107 (899)
++.++.+||+.+++.... +...+|.+.|+||++||+|+|.+.|+.+++....+...+++.+||..||.+|+++|+|.
T Consensus 2 ~~~~l~~Win~~l~~~~~---~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~ 78 (107)
T cd00014 2 QKEELLRWINKVLGEYGP---VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPV 78 (107)
T ss_pred hHHHHHHHHHHHhccCCC---ccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCce
Confidence 467899999999997543 35789999999999999999999999998887544455678899999999999999996
Q ss_pred --ccccccc-cCCcchHHHHHHHHHHHH
Q 042277 108 --FEMSDLE-KGSMKPVINCLLNLRAEY 132 (899)
Q Consensus 108 --F~~~DL~-eg~~~~Vv~cl~aL~~~~ 132 (899)
|++.||+ +|.+.+|+.||.+|..++
T Consensus 79 ~~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 79 VNFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred eccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 9999999 555999999999998775
No 33
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.46 E-value=6.7e-14 Score=128.74 Aligned_cols=97 Identities=33% Similarity=0.482 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcccccccc-CCCcchhhhhHHHHHHHHhhcCCC-
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYS-YNSSMSRSGKIARFLTTLGKLGIS- 106 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~-~~~~~~~~ENI~~FL~a~~~~Gvp- 106 (899)
+.++..|++.+++... .+..++|...|+||++||+|+|.+.|+.+++.... +...+++.+||..|+.+|+++|..
T Consensus 2 ~~~l~~Win~~l~~~~---~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~ 78 (103)
T smart00033 2 EKTLLRWVNSLLAEYG---KPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKL 78 (103)
T ss_pred hHHHHHHHHHHcccCC---CCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCee
Confidence 5688999999999742 23568999999999999999999999999987643 333467789999999999999953
Q ss_pred -cccccccccC-C-cchHHHHHHHH
Q 042277 107 -RFEMSDLEKG-S-MKPVINCLLNL 128 (899)
Q Consensus 107 -~F~~~DL~eg-~-~~~Vv~cl~aL 128 (899)
.|++.||++| + +.+|+.||+++
T Consensus 79 ~~~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 79 VLFEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred eccCHHHHhhcchHHHHHHHHHHhC
Confidence 4999999999 5 88999999864
No 34
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.40 E-value=2.9e-13 Score=158.32 Aligned_cols=105 Identities=19% Similarity=0.366 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCCCc-
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISR- 107 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gvp~- 107 (899)
-.||.-||++++|+ .+| +..|.+.||+|++|.+|..+++|..+.+|.....-.|.+.+||+.||..++..|||.
T Consensus 46 v~EaK~WIee~~~~-~l~----~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGlPe~ 120 (1054)
T COG5261 46 VSEAKIWIEEVIEE-ALP----ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRHTDNINAFLDLIEHVGLPES 120 (1054)
T ss_pred HHHHHHHHHHHhcc-CCc----hhhHHHHHhccchHHHHHHHhCCCceeEeeecccceeeccccHHHHHhHhhhcCCcce
Confidence 46899999999997 232 678999999999999999999999999999776667788899999999999999997
Q ss_pred --ccccccccCC-cchHHHHHHHHHHHHHhcCCC
Q 042277 108 --FEMSDLEKGS-MKPVINCLLNLRAEYITGGDI 138 (899)
Q Consensus 108 --F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g~~ 138 (899)
|+..|||||+ +++|+.|||||..+..|.|-.
T Consensus 121 FhFEl~DlYekKN~pkViyciHaL~~~ls~~g~t 154 (1054)
T COG5261 121 FHFELQDLYEKKNIPKVIYCIHALISMLSWPGKT 154 (1054)
T ss_pred eeeehHhhhccCCcchhHHHHHHHHHHhcCCCCC
Confidence 9999999999 999999999999999998743
No 35
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=99.38 E-value=8.8e-13 Score=161.93 Aligned_cols=119 Identities=20% Similarity=0.356 Sum_probs=101.6
Q ss_pred CCchHHHHHH------------HHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcc
Q 042277 20 INSEVEAKQR------------ALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSM 87 (899)
Q Consensus 20 ~~~~~~a~r~------------~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~ 87 (899)
..+++.+.|| .||..||++++|+. +|+ ..+|.++||||+.|.+|.|.+.|-.--++.......|
T Consensus 23 ~~~~~~~~rr~~~vaYeyLCr~eE~k~W~e~cl~ed-L~p---ttele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~f 98 (1401)
T KOG2128|consen 23 SSAEEMDERREQNVAYEYLCRVEEAKRWIEECLGED-LPP---TTELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLHF 98 (1401)
T ss_pred chHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhccc-CCC---chHHHHHhhhhhHHHHHHhhcCCcceeeeeecCCcee
Confidence 5667777776 48999999999985 553 5679999999999999999999987777776666668
Q ss_pred hhhhhHHHHHHHHhhcCCCc---ccccccccCC-cchHHHHHHHHHHHHHhcCCCCcccc
Q 042277 88 SRSGKIARFLTTLGKLGISR---FEMSDLEKGS-MKPVINCLLNLRAEYITGGDIRPLTS 143 (899)
Q Consensus 88 ~~~ENI~~FL~a~~~~Gvp~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g~~~~~~~ 143 (899)
.+.+||..||.|++..|||. |++.|+|+|+ |+ |+.|||||..|....|-.-+.++
T Consensus 99 rHtdNi~q~~~~me~iglP~iF~~E~~Dvy~~kN~p-~i~cihaLs~~l~k~~~aP~l~~ 157 (1401)
T KOG2128|consen 99 RHTDNINQWLRAMESIGLPEIFYPETTDVYEGKNIP-VIYCIHALSLYLFKQGKAPPLQN 157 (1401)
T ss_pred ecchhHHHHHHHHhhcCCCcccccchhhhhcCCCCc-eeeHHHHHHHHHhcCCCCccccc
Confidence 88899999999999999997 9999999999 99 99999999999888765444433
No 36
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.33 E-value=2e-12 Score=120.12 Aligned_cols=103 Identities=29% Similarity=0.436 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCC--CcchhhhhHHHHHHHHhh-cCC
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYN--SSMSRSGKIARFLTTLGK-LGI 105 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~--~~~~~~ENI~~FL~a~~~-~Gv 105 (899)
+.++..||+.+++..+. .....+|...|+||++||+|+|++.||.|+--...|. ..+.+++||..|+.+|++ +|+
T Consensus 1 e~~ll~Win~~l~~~~~--~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~ 78 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGK--GRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGI 78 (108)
T ss_dssp HHHHHHHHHHHHTTSTT--TSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHcccccC--CCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCC
Confidence 46789999999996411 1223478999999999999999999998733322221 345678999999999999 999
Q ss_pred Cc-ccccccc-cCCcchHHHHHHHHHHHHH
Q 042277 106 SR-FEMSDLE-KGSMKPVINCLLNLRAEYI 133 (899)
Q Consensus 106 p~-F~~~DL~-eg~~~~Vv~cl~aL~~~~~ 133 (899)
|. +++.||+ ++....|+.||.+|..+++
T Consensus 79 ~~~~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 79 PPLLSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp SCTS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 97 9999999 5559999999999998874
No 37
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.02 E-value=2.5e-12 Score=152.77 Aligned_cols=297 Identities=28% Similarity=0.283 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH---HHHHHHhhhhhhhhhcCCCEEEEEecCCCCCCCCCCCceEEEEccCCe---EEe
Q 042277 460 HADDLYCLGVRLKALAGAAENYH---AVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGE---LIF 533 (899)
Q Consensus 460 ~~~~~~~l~~~l~~l~~~~~~y~---~~~~e~R~l~N~iqelkGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~~---v~i 533 (899)
-.+.+-.||..+..|.+.....| ....-+|.|++.++..+ +++|+|+|+|......+...+..+...... ..+
T Consensus 263 iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~ 341 (568)
T COG5059 263 INKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQ 341 (568)
T ss_pred hHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCccc
Confidence 44455566666666664222222 23345799999999999 999999999987654433333333322211 111
Q ss_pred cCCCCCCCCCceeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHH
Q 042277 534 GNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRAL 613 (899)
Q Consensus 534 ~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal 613 (899)
.+...........|.||.+|.+...+..++.+...++++.++| +++||++++|+++||.- ...++..-.+
T Consensus 342 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 411 (568)
T COG5059 342 VNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS------RIDLIMKSII 411 (568)
T ss_pred ccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc------hhhhhhhhhh
Confidence 1111111123456999999999999999999999999999999 99999999999999964 2345555555
Q ss_pred HHHHHhhhc-cCCCeeEEEEEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHH
Q 042277 614 NDLFNLSQN-RRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDV 692 (899)
Q Consensus 614 ~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~ 692 (899)
...|..... ....|.|...+.++++|-....++............. .... . .......++.. .....+.
T Consensus 412 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~--~------~~~~~~~~~~~-~~~~~~~ 481 (568)
T COG5059 412 SGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIH-KLNK--L------RHDLSSLLSSI-PEETSDR 481 (568)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH-HHHH--H------HHHHHHhhhhc-chhhhhh
Confidence 667765443 3345667777777777722222222211111000000 0000 0 00000001110 1111222
Q ss_pred HHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHH
Q 042277 693 LELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLS 772 (899)
Q Consensus 693 ~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLs 772 (899)
.... .+...+...++..|.+++++|++|+.+............ ++.|||||+||. .+...|.++++...+|++|.
T Consensus 482 ~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~ 556 (568)
T COG5059 482 VESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLS 556 (568)
T ss_pred hhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccc
Confidence 2222 567888899999999999999999988865544333322 899999999999 99999999999999999999
Q ss_pred HHHHHHHHHc
Q 042277 773 ALGDVIFALA 782 (899)
Q Consensus 773 aLg~VI~aLa 782 (899)
.+|++|.++.
T Consensus 557 ~~~d~~~~~~ 566 (568)
T COG5059 557 SLGDVIHALG 566 (568)
T ss_pred cchhhhhhcc
Confidence 9999998864
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=4.4e-10 Score=128.97 Aligned_cols=104 Identities=21% Similarity=0.324 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCC-----cchhhhhHHHHH
Q 042277 23 EVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNS-----SMSRSGKIARFL 97 (899)
Q Consensus 23 ~~~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~-----~~~~~ENI~~FL 97 (899)
+++..+-.+++.-||.-+-. +-++||.++|-||+|||.|+|.|.|-+|+.|+.++.+ ..++.-||.+||
T Consensus 572 ~eE~eL~~QLRk~iEtRLk~------sLp~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFL 645 (722)
T KOG0532|consen 572 REEKELMLQLRKLIETRLKV------SLPEDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFL 645 (722)
T ss_pred hHHHHHHHHHHHHHHHHhcc------cCchhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHH
Confidence 34444444555555544433 3458999999999999999999999999999876644 236779999999
Q ss_pred HHHhhcCCCc---ccccccccC--C-cchHHHHHHHHHHHH
Q 042277 98 TTLGKLGISR---FEMSDLEKG--S-MKPVINCLLNLRAEY 132 (899)
Q Consensus 98 ~a~~~~Gvp~---F~~~DL~eg--~-~~~Vv~cl~aL~~~~ 132 (899)
.||+++|||. +...|+.++ . ..+|++++++++..+
T Consensus 646 eaCRkiGVpEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~~a 686 (722)
T KOG0532|consen 646 EACRKIGVPEADLCSPMDILQKIERNPRKVARTVLTVGKKA 686 (722)
T ss_pred HHHHHcCCChHhhcCHHHhhhhhcccchhHHHHHHhhcccc
Confidence 9999999996 999999887 3 889999998885544
No 39
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=98.91 E-value=1.8e-09 Score=122.72 Aligned_cols=98 Identities=31% Similarity=0.402 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCCCCCCC-------CCChHHHHHhchhhHHHHHHhhhhcCCcc--ccccccCCC-cchhhhhHHHHHHHH
Q 042277 31 LLIEWLNSILPNLNFPI-------KASDEELRACLIDGTVLCQILKRLKPASV--DEANYSYNS-SMSRSGKIARFLTTL 100 (899)
Q Consensus 31 e~~~Wi~~~~g~~~~~~-------~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~~~~~~-~~~~~ENI~~FL~a~ 100 (899)
++..||..+ -+ +|+ .+..=||..+|||||+||.|+|.|.|++| ++|+-.|.+ .|-|..||+.||.+|
T Consensus 6 qCarWLidc-kV--Lptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C 82 (865)
T KOG2996|consen 6 QCARWLIDC-KV--LPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFC 82 (865)
T ss_pred HHHHHHhhc-cc--cCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHH
Confidence 678899864 22 221 23456899999999999999999999998 889877755 356779999999999
Q ss_pred -hhcCCCc---ccccccccCC-cchHHHHHHHHHHH
Q 042277 101 -GKLGISR---FEMSDLEKGS-MKPVINCLLNLRAE 131 (899)
Q Consensus 101 -~~~Gvp~---F~~~DL~eg~-~~~Vv~cl~aL~~~ 131 (899)
+.+|+.. |++-|||.-. +.+|+.+|..|.-.
T Consensus 83 ~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t 118 (865)
T KOG2996|consen 83 CEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHT 118 (865)
T ss_pred HHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccC
Confidence 7899975 9999999998 99999999888543
No 40
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.53 E-value=0.00011 Score=84.36 Aligned_cols=96 Identities=19% Similarity=0.369 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhcCCC-----CCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc--cccc-ccCCCcchhhhhHHH
Q 042277 24 VEAKQRALLIEWLNSILPNL-----NFPIKASDEELRACLIDGTVLCQILKRLKPASV--DEAN-YSYNSSMSRSGKIAR 95 (899)
Q Consensus 24 ~~a~r~~e~~~Wi~~~~g~~-----~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~-~~~~~~~~~~ENI~~ 95 (899)
+...-+.+-+.||...++.. .+|..|...+|.+..+||++||+|||-=.||.| .-|| ...-+.+...||..-
T Consensus 116 i~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~l 195 (627)
T KOG0046|consen 116 INEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLNL 195 (627)
T ss_pred ecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchhh
Confidence 44555668899999999953 457889999999999999999999999999998 3345 222345778899999
Q ss_pred HHHHHhhcCCCc--ccccccccCCcc
Q 042277 96 FLTTLGKLGISR--FEMSDLEKGSMK 119 (899)
Q Consensus 96 FL~a~~~~Gvp~--F~~~DL~eg~~~ 119 (899)
-|.-|+.+|... +-+-||-||+..
T Consensus 196 ~lnSAkAiGc~VvNIga~Dl~eGrph 221 (627)
T KOG0046|consen 196 ALNSAKAIGCTVVNIGAQDLAEGRPH 221 (627)
T ss_pred HHhhcccccceEEecCchhhhcCCce
Confidence 999999999764 999999999933
No 41
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.18 E-value=0.42 Score=53.17 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=27.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 042277 350 KDQQMLENLALKQELEMAKKTYELRCLHMETEYK 383 (899)
Q Consensus 350 ke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~ 383 (899)
..++..++..|+++|..+++.|+.++..+..++.
T Consensus 119 r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 119 RVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 3456778899999999999999999998877663
No 42
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=96.82 E-value=0.0014 Score=59.62 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=52.4
Q ss_pred CCCCChHHHHHhchhhHHHHHHhhhhcCCcccc--ccccCCC-cchhhhhHHHHHHHHhh-cCCCc--cccccc
Q 042277 46 PIKASDEELRACLIDGTVLCQILKRLKPASVDE--ANYSYNS-SMSRSGKIARFLTTLGK-LGISR--FEMSDL 113 (899)
Q Consensus 46 ~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~k--i~~~~~~-~~~~~ENI~~FL~a~~~-~Gvp~--F~~~DL 113 (899)
|..+.-+||-..|+||.+||.|++...|+.|+. |.-.+.. .+..+.||..|..+|.+ +|... |++-||
T Consensus 8 ~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~edl 81 (85)
T PF11971_consen 8 PYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPEDL 81 (85)
T ss_pred CCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHHH
Confidence 344667899999999999999999999999954 5433333 34677999999999975 78765 555555
No 43
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=96.59 E-value=0.0046 Score=56.53 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=59.5
Q ss_pred HHHHHhchhhHHHHHHhhhhcCCccccccccCC-CcchhhhhHHHHHHHH-hhcCCCc---ccccccccCC---cchHHH
Q 042277 52 EELRACLIDGTVLCQILKRLKPASVDEANYSYN-SSMSRSGKIARFLTTL-GKLGISR---FEMSDLEKGS---MKPVIN 123 (899)
Q Consensus 52 e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~-~~~~~~ENI~~FL~a~-~~~Gvp~---F~~~DL~eg~---~~~Vv~ 123 (899)
..+...+|-|.=||.|-|.++|..--.|+.... ....+-..|-.|+.|| .++|+|. |-.+|||... +.+|+.
T Consensus 4 t~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~dT~gfvKVi~ 83 (89)
T PF06395_consen 4 TQLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGDDTNGFVKVIK 83 (89)
T ss_pred HHHHHHHhCcCcHHHHHHccCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccCCCcchhhHHH
Confidence 467889999999999999999975445532221 2224457899999999 6799996 9999999876 788888
Q ss_pred HHHHH
Q 042277 124 CLLNL 128 (899)
Q Consensus 124 cl~aL 128 (899)
.+-.|
T Consensus 84 ~V~~v 88 (89)
T PF06395_consen 84 VVNRV 88 (89)
T ss_pred HHHhh
Confidence 77543
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.38 E-value=1.7 Score=57.41 Aligned_cols=123 Identities=22% Similarity=0.257 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh----------hHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhH
Q 042277 356 ENLALKQELEMAKKTYELRCLHMETEYKGAKS----------GFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKE 425 (899)
Q Consensus 356 e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~----------~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~ 425 (899)
.+..+++++...+..++.++.+++..+...-. .|+.++++|+..+...+..-..+.++..-+...|....
T Consensus 733 ~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~ 812 (1201)
T PF12128_consen 733 QIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVD 812 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 33444444444455555555554444433221 23344444444443333333333333333333333211
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 426 SIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAE 479 (899)
Q Consensus 426 ~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~ 479 (899)
.+..........+.+++.....+++++...+..|......+...++.+.....
T Consensus 813 -~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 865 (1201)
T PF12128_consen 813 -ELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLE 865 (1201)
T ss_pred -hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233334455555555556666666666666666666555555444333
No 45
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.29 E-value=1.6 Score=56.80 Aligned_cols=13 Identities=31% Similarity=0.243 Sum_probs=8.0
Q ss_pred EecCCHHHHHHHH
Q 042277 684 HPVTSTEDVLELM 696 (899)
Q Consensus 684 ~~V~s~ee~~~lL 696 (899)
+.|.+.+.+..+.
T Consensus 624 ~v~~~l~~a~~~~ 636 (1164)
T TIGR02169 624 LVVEDIEAARRLM 636 (1164)
T ss_pred EEEcCHHHHHHHh
Confidence 3566666666653
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.16 E-value=2.2 Score=56.22 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=19.2
Q ss_pred hhhhhhhcCCCCCCCCccHHHHHHHhhhccccccCCCC
Q 042277 220 KITEMMKSTSLDNAPTQSLLSVVNGILDESVDRKNGEI 257 (899)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (899)
+|.+++...++.-.+. ++ |..|-+.+.+.-||.|.
T Consensus 123 dI~~l~~~~gi~~~~~-~i--V~QG~V~~i~~~kp~er 157 (1163)
T COG1196 123 DIQDLLADSGIGKESY-SI--VSQGKVEEIINAKPEER 157 (1163)
T ss_pred HHHHHHHhcCCCCCCC-ce--eecccHHHHHcCCHHHH
Confidence 4666666666664433 44 55555555555555554
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.11 E-value=0.96 Score=53.98 Aligned_cols=28 Identities=14% Similarity=0.014 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 042277 353 QMLENLALKQELEMAKKTYELRCLHMET 380 (899)
Q Consensus 353 ~~~e~~~LkqeL~~~k~~~e~~~~~le~ 380 (899)
....+.+|.++|..++..|+.++.+...
T Consensus 202 ~~n~~q~Lleel~f~~~~h~~eI~e~~~ 229 (546)
T KOG0977|consen 202 LQNRVQTLLEELAFLKRIHKQEIEEERR 229 (546)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3556678888888888877777775443
No 48
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.08 E-value=1.8 Score=54.91 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=11.6
Q ss_pred EEecCCHHHHHHHHHHH
Q 042277 683 MHPVTSTEDVLELMDIG 699 (899)
Q Consensus 683 ~~~V~s~ee~~~lL~~g 699 (899)
.+-+.+-.++..+|..+
T Consensus 599 ~lLiEdk~Ea~~~m~s~ 615 (1074)
T KOG0250|consen 599 VLLIEDKKEAREFMQSD 615 (1074)
T ss_pred EEEecchHHHHHHHhcC
Confidence 34566777888888655
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.04 E-value=0.66 Score=55.75 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 042277 431 FMDLQHGALRELRFSSDSIKQEISKAQK 458 (899)
Q Consensus 431 ~~~~~~~~l~~l~~~~~~~k~~~~~~q~ 458 (899)
.+....+.+..+......++.++..++.
T Consensus 345 ~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 345 KISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444445555555554443
No 50
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.93 E-value=4.1 Score=48.87 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=25.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhh
Q 042277 438 ALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQ 496 (899)
Q Consensus 438 ~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iq 496 (899)
.|++-+..|...|+.+...-....+.+.+|...+ ..+.+.|...-.+|-+|--+|-
T Consensus 347 ~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el---~~~e~~lqEer~E~qkL~~ql~ 402 (546)
T PF07888_consen 347 ELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL---QMLEEHLQEERMERQKLEKQLG 402 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555544333333334444444333 3344455555555555544443
No 51
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.91 E-value=3.5 Score=54.36 Aligned_cols=61 Identities=18% Similarity=0.342 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHccCCCCCCCC-------------CChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 042277 769 KSLSALGDVIFALAQKSPHVPYR-------------NSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERV 835 (899)
Q Consensus 769 kSLsaLg~VI~aLa~k~~hVPYR-------------dSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~ 835 (899)
|||+||.=+++-+.-+ ..||+ -+.+.++|+... +++..++|-+=. -|+.+|.+.
T Consensus 1072 KsLtAlAllFAi~~~~--PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~----------~~m~~ad~l 1138 (1163)
T COG1196 1072 KSLTALALLFAIQKYR--PAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRK----------GTMEAADRL 1138 (1163)
T ss_pred HHHHHHHHHHHHHhhC--CCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcCh----------HHHHHHHHH
Confidence 5888887766655432 23333 256777787777 666655554432 477888888
Q ss_pred cCccccc
Q 042277 836 SGVELGA 842 (899)
Q Consensus 836 k~v~~~~ 842 (899)
-+|....
T Consensus 1139 ~GVtm~~ 1145 (1163)
T COG1196 1139 VGVTMQE 1145 (1163)
T ss_pred eeeEeec
Confidence 8876544
No 52
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.91 E-value=4.3 Score=46.22 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042277 431 FMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLG 468 (899)
Q Consensus 431 ~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~ 468 (899)
.+..+..+|++|+.....+.+++..+++.|..-..-.+
T Consensus 253 ~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~ 290 (499)
T COG4372 253 QIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQ 290 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678888998888888999888888876654333
No 53
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.84 E-value=0.97 Score=44.40 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhc
Q 042277 436 HGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDL 498 (899)
Q Consensus 436 ~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqel 498 (899)
...+.+|+....+.+..+...+..|.++-..|...+. .+..++......|+-||++|+.+
T Consensus 72 ~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~---~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 72 QQEINELKAEAESAKAELEESEASWEEQKEQLEKELS---ELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556666666666666666666666555555533 33344444567799999999865
No 54
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.82 E-value=4.4 Score=52.84 Aligned_cols=6 Identities=17% Similarity=0.008 Sum_probs=2.8
Q ss_pred HHHHHH
Q 042277 30 ALLIEW 35 (899)
Q Consensus 30 ~e~~~W 35 (899)
-+|+.|
T Consensus 40 ldAi~~ 45 (1164)
T TIGR02169 40 GDAILF 45 (1164)
T ss_pred HHHHHH
Confidence 344445
No 55
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=2.2 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=14.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 042277 847 KEGRDVRELMEQVASLKDTIAKK 869 (899)
Q Consensus 847 ~~~~~~~~L~eqv~~Lk~~i~~~ 869 (899)
.+...+++++++|+.++.++...
T Consensus 855 ~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 855 VDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777666655
No 56
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.70 E-value=3.3 Score=56.28 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=22.9
Q ss_pred HHHHHHHHHHH---hhhhhhhHhhhhhhhhhhHHhhhhHHHHHHHhh
Q 042277 265 LRKVVQEIERR---ISTQADHLRTQNNLFKTREEKYQSRIRVLEALA 308 (899)
Q Consensus 265 ~~~~~~~~e~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 308 (899)
|.|-..+.|.+ +.++....+.+++-++-.-.++.+-+..||..-
T Consensus 983 L~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~l 1029 (1930)
T KOG0161|consen 983 LSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTL 1029 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345544 445554555555555555556666666665544
No 57
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=2 Score=52.41 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=15.9
Q ss_pred EEEEecCCCCCcccccchhhhHH
Q 042277 740 LHLVDLAGSERVDRSEATGDRLK 762 (899)
Q Consensus 740 L~lVDLAGSEr~~ks~~~g~rlk 762 (899)
.-.+|-+||-...+++..+.+-.
T Consensus 958 ~r~~~q~gs~Tp~k~g~~~kkpe 980 (1118)
T KOG1029|consen 958 VRPKDQEGSGTPPKQGPTPKKPE 980 (1118)
T ss_pred eeehhccCCCCCCCCCCCCCCch
Confidence 45677788877777777766543
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=2 Score=52.41 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhh
Q 042277 265 LRKVVQEIERRIS 277 (899)
Q Consensus 265 ~~~~~~~~e~~~~ 277 (899)
=|++++|=+||=.
T Consensus 332 RRq~leeqqqrer 344 (1118)
T KOG1029|consen 332 RRQALEEQQQRER 344 (1118)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777666644
No 59
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.58 E-value=2.1 Score=58.05 Aligned_cols=59 Identities=25% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 354 MLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 354 ~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
...++....++...+.+++....+.-.++++++..+.+++++++..++........++.
T Consensus 1349 ~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek 1407 (1930)
T KOG0161|consen 1349 ERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEK 1407 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666666555556666666666666666655555554444433
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.54 E-value=3.8 Score=50.93 Aligned_cols=131 Identities=22% Similarity=0.250 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHh-------------hHHHHHHhhhhhHHHHHHHHHHHHHH
Q 042277 339 EDDDVAKLMKEKDQQMLENLALKQELEMAKKTYEL---RCL-------------HMETEYKGAKSGFEERIKELEHLLQV 402 (899)
Q Consensus 339 ~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~---~~~-------------~le~~~~~~~~~le~~i~ele~~l~~ 402 (899)
+++|.+++-++.|.+..|++.|++.-+.+++..+. .+. .|.+++.+.+.+||++++.||..+
T Consensus 394 ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv-- 471 (1243)
T KOG0971|consen 394 EKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETV-- 471 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHH--
Confidence 44678888888888888887777655544443222 111 234444444445666666555544
Q ss_pred HHhHHHHHhhcchhhHHHhhh---hHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 403 SRNKVRELEANSDSKYQRWSR---KESIYQSFMDLQHGALRELRFSSDSIKQ---EISKAQKSHADDLYCLGVRLKALAG 476 (899)
Q Consensus 403 ~~~~~~~le~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~k~---~~~~~q~~~~~~~~~l~~~l~~l~~ 476 (899)
.++|++.++..|.++. .+.-++..++...++..+|......-.. +....-.+|++....|...++.+.+
T Consensus 472 -----~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 472 -----GDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555554444433 3334444455544444444332221111 1223345777777777777777765
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.53 E-value=7.6 Score=47.49 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYK 383 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~ 383 (899)
..+.+|..-.+.....+.+|.++-+..+.-+..+...+.....
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~ 436 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKAS 436 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4567777777777777777777777666666666555554433
No 62
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.50 E-value=8 Score=47.23 Aligned_cols=152 Identities=19% Similarity=0.243 Sum_probs=76.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhh
Q 042277 345 KLMKEKDQQMLENLALKQELEMAKKTYEL-------RCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSK 417 (899)
Q Consensus 345 ~l~~eke~~~~e~~~LkqeL~~~k~~~e~-------~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~ 417 (899)
.+..+++....+..+|++.+...--..+. ....++..+.....+|..++++++.......+....+++..+.+
T Consensus 144 el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~ 223 (716)
T KOG4593|consen 144 ELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHE 223 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554332111111 11222333333344455555555554444444444444433332
Q ss_pred HHHhhh--------hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042277 418 YQRWSR--------KESIYQSFMDLQHGALRELRFSSDSIKQEISK------AQKSHADDLYCLGVRLKALAGAAENYHA 483 (899)
Q Consensus 418 ~~~~~~--------~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~------~q~~~~~~~~~l~~~l~~l~~~~~~y~~ 483 (899)
.+.-.. .-..+...++.+...+.+|..++.+.+.++.. .-.-+.++.+.|+.++..+-.-.+.|-.
T Consensus 224 qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~ 303 (716)
T KOG4593|consen 224 QQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLG 303 (716)
T ss_pred HHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 221110 01122334445566667777777777777653 3347788888888888877666666665
Q ss_pred HHHHHhhhhhhhh
Q 042277 484 VLAENRRLFNEVQ 496 (899)
Q Consensus 484 ~~~e~R~l~N~iq 496 (899)
...++-.|--.++
T Consensus 304 LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 304 LELENEDLLTKLQ 316 (716)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 63
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.47 E-value=3.8 Score=50.97 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 042277 389 FEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQS-------FMDLQHGALRELRFSSDSIKQEISKAQKSHA 461 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~ 461 (899)
+..+.++||.++..++.+++..|+.... +++.-..++. -.......|+-|+.+...+..-+.+..+--.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~----~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKl 618 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRE----LESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKL 618 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5566666666666666666555442211 1111111111 1222333455555555555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042277 462 DDLYCLGVRLKALAGAAE 479 (899)
Q Consensus 462 ~~~~~l~~~l~~l~~~~~ 479 (899)
+-|..||..-+.|-.+..
T Consensus 619 dLfsaLg~akrq~ei~~~ 636 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQG 636 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666677766555544433
No 64
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.41 E-value=7.9 Score=50.38 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=7.5
Q ss_pred HHHHHHhcCccc
Q 042277 829 LKFAERVSGVEL 840 (899)
Q Consensus 829 L~FA~R~k~v~~ 840 (899)
+.+|.++-+|..
T Consensus 1155 ~~~~d~~~~~~~ 1166 (1179)
T TIGR02168 1155 MEVADQLYGVTM 1166 (1179)
T ss_pred HHHhhhHeeeee
Confidence 346888766653
No 65
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.19 E-value=4.5 Score=50.33 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=33.6
Q ss_pred ChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHh
Q 042277 50 SDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLG 101 (899)
Q Consensus 50 ~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~ 101 (899)
+...|.+++==||||=.-.-| .-|+|..+.+ |+|-+|-+-|.+.-+
T Consensus 27 G~T~FA~G~WvGVvLDep~GK-NnGsVqg~qY-----F~Cd~ncG~FVr~sq 72 (1243)
T KOG0971|consen 27 GQTQFAEGKWVGVVLDEPKGK-NNGSVQGVQY-----FECDENCGVFVRSSQ 72 (1243)
T ss_pred cccccccCceEEEEeccccCC-CCCcccceee-----EecCCCcceEeehhh
Confidence 445688888888888776666 4588877752 666799999987655
No 66
>PRK03918 chromosome segregation protein; Provisional
Probab=95.12 E-value=14 Score=47.05 Aligned_cols=36 Identities=33% Similarity=0.411 Sum_probs=17.1
Q ss_pred ccHHHHHHHhhhccccccCCCCchHHHHHHHHHHHHHHHHhhh
Q 042277 236 QSLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRIST 278 (899)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 278 (899)
.....++..|+. + +.. ......++.+..+++.++..
T Consensus 145 ~~r~~~~~~~~~--~----~~~-~~~~~~~~~~~~~~~~~~~~ 180 (880)
T PRK03918 145 ESREKVVRQILG--L----DDY-ENAYKNLGEVIKEIKRRIER 180 (880)
T ss_pred HHHHHHHHHHhC--C----HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 455556666663 1 111 22234455555565555443
No 67
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.12 E-value=5.8 Score=50.83 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=22.6
Q ss_pred HHHHHHHhhcCCC----cccccccccCC-cchHHHHHHHHHHH
Q 042277 94 ARFLTTLGKLGIS----RFEMSDLEKGS-MKPVINCLLNLRAE 131 (899)
Q Consensus 94 ~~FL~a~~~~Gvp----~F~~~DL~eg~-~~~Vv~cl~aL~~~ 131 (899)
.||=..+-+-=|. .|.++==-.|+ -+-|++.++=.=++
T Consensus 92 ~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGf 134 (1293)
T KOG0996|consen 92 ENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGF 134 (1293)
T ss_pred hhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhh
Confidence 5676666433333 36665335576 78899988755443
No 68
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.04 E-value=5.3 Score=53.38 Aligned_cols=69 Identities=4% Similarity=0.084 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhh
Q 042277 428 YQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQ 496 (899)
Q Consensus 428 ~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iq 496 (899)
+...+..+...+++++..+..++.++...+..+.+.....+.....+......|...+..-..+..+|+
T Consensus 893 l~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 893 LSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555555444444444444444433444333333333333333
No 69
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.81 E-value=1.9 Score=48.21 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=21.1
Q ss_pred HHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 042277 438 ALRELRFSSDSIKQEI---SKAQKSHADDLYCLGVRLKAL 474 (899)
Q Consensus 438 ~l~~l~~~~~~~k~~~---~~~q~~~~~~~~~l~~~l~~l 474 (899)
.|.++..+...+|.++ .+.|+-..+++..|...++.|
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdl 285 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDL 285 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444455544 345666777777666666555
No 70
>PRK02224 chromosome segregation protein; Provisional
Probab=94.74 E-value=13 Score=47.51 Aligned_cols=15 Identities=13% Similarity=-0.026 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcCC
Q 042277 28 QRALLIEWLNSILPN 42 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~ 42 (899)
....+..||..++|-
T Consensus 110 ~~~~~~~~i~~llg~ 124 (880)
T PRK02224 110 GARDVREEVTELLRM 124 (880)
T ss_pred ChHHHHHHHHHHHCC
Confidence 345788999999983
No 71
>PRK11637 AmiB activator; Provisional
Probab=94.60 E-value=8.7 Score=45.00 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=8.5
Q ss_pred CCceeEEEEEEEe
Q 042277 715 SRSHSVVTVHVRG 727 (899)
Q Consensus 715 SRSH~IftI~v~~ 727 (899)
...|+.|.|+..+
T Consensus 405 ~~~~l~fei~~~~ 417 (428)
T PRK11637 405 GRPSLYFEIRRQG 417 (428)
T ss_pred CCCeEEEEEEECC
Confidence 4567877777643
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.60 E-value=13 Score=45.66 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=14.4
Q ss_pred hHhhhhhhhhhhHHhhhhHHHHHHH
Q 042277 282 HLRTQNNLFKTREEKYQSRIRVLEA 306 (899)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~e~ 306 (899)
.+..+..+++...+...+||.-||.
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~ 57 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELER 57 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666655554
No 73
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.60 E-value=11 Score=43.35 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=19.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 042277 438 ALRELRFSSDSIKQEISKAQKSHADDLYCL 467 (899)
Q Consensus 438 ~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l 467 (899)
.++.|+++...+|..+...|+.|.+.+..+
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy 283 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQY 283 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777766666666655443
No 74
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=7.1 Score=45.37 Aligned_cols=94 Identities=23% Similarity=0.247 Sum_probs=58.0
Q ss_pred HHHHHHHhhhhhHHHhhhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-HH-HHHHHHH
Q 042277 320 NQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSG-FE-ERIKELE 397 (899)
Q Consensus 320 ~~l~~~~~e~~k~ee~~~~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~-le-~~i~ele 397 (899)
+++|....-+...-+..+-.+.-+++|+.........+.+|+++-+..|+.......+|-++.+...-+ -+ .+|++++
T Consensus 272 selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~Iqele 351 (521)
T KOG1937|consen 272 SELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELE 351 (521)
T ss_pred HHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 334433333333333333344567888888888888888888888888877777766665544433322 22 5778888
Q ss_pred HHHHHHHhHHHHHhhc
Q 042277 398 HLLQVSRNKVRELEAN 413 (899)
Q Consensus 398 ~~l~~~~~~~~~le~~ 413 (899)
..|+..-.++..-++.
T Consensus 352 qdL~a~~eei~~~eel 367 (521)
T KOG1937|consen 352 QDLEAVDEEIESNEEL 367 (521)
T ss_pred HHHHHHHHHHHhhHHH
Confidence 8887777777644333
No 75
>PRK02224 chromosome segregation protein; Provisional
Probab=94.54 E-value=9.2 Score=48.78 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=10.6
Q ss_pred cccchhhhhccccCCCC
Q 042277 200 HKFHEVFQLKQGCYADL 216 (899)
Q Consensus 200 ~~~~~~~~~~~~~~~~~ 216 (899)
+-|..++-+.||.+..+
T Consensus 127 ~~f~~~~~i~Qge~~~~ 143 (880)
T PRK02224 127 EAFVNCAYVRQGEVNKL 143 (880)
T ss_pred HHhcceeEeeccChHHH
Confidence 34555556788876653
No 76
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=94.37 E-value=7.3 Score=46.36 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=60.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 042277 379 ETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQK 458 (899)
Q Consensus 379 e~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~ 458 (899)
+++....+..+..||.+|-..++....+........+.-...+...++. .......|..+...+..++.|+.-..+
T Consensus 408 esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e----k~~l~eeL~~a~~~i~~LqDEL~TTr~ 483 (518)
T PF10212_consen 408 ESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKE----KESLEEELKEANQNISRLQDELETTRR 483 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334556777888887777766666555544333222222222221 122333466666777778888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 042277 459 SHADDLYCLGVRLKALAGAAEN 480 (899)
Q Consensus 459 ~~~~~~~~l~~~l~~l~~~~~~ 480 (899)
.|.+++..|-.++..|.+.-..
T Consensus 484 NYE~QLs~MSEHLasmNeqL~~ 505 (518)
T PF10212_consen 484 NYEEQLSMMSEHLASMNEQLAK 505 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877654433
No 77
>PRK11637 AmiB activator; Provisional
Probab=94.23 E-value=10 Score=44.41 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 042277 343 VAKLMKEKDQQMLENLALKQELEMAKKTY 371 (899)
Q Consensus 343 ~~~l~~eke~~~~e~~~LkqeL~~~k~~~ 371 (899)
+..+..+......++..++.++...+..+
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444333333
No 78
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.22 E-value=7.5 Score=46.70 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=16.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 042277 348 KEKDQQMLENLALKQELEMAKKTYELRCL 376 (899)
Q Consensus 348 ~eke~~~~e~~~LkqeL~~~k~~~e~~~~ 376 (899)
++......++..|+.++..++.+++....
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k 134 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEK 134 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666655433
No 79
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.20 E-value=7.5 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHH
Q 042277 388 GFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 388 ~le~~i~ele~~l~~~~~~~~~l 410 (899)
.++.+.++.+.+++.++..+.++
T Consensus 131 ~~q~d~ke~etelE~~~srlh~l 153 (1265)
T KOG0976|consen 131 GAQDDKKENEIEIENLNSRLHKL 153 (1265)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 34444444444444444444333
No 80
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.16 E-value=5.2 Score=48.79 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHH
Q 042277 358 LALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKV 407 (899)
Q Consensus 358 ~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~ 407 (899)
...+++|+++++.|+.++..|...+..+-..|..+.++|+..|..+....
T Consensus 136 E~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r 185 (739)
T PF07111_consen 136 EGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRR 185 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588999999999999999999999999999999999999887666654
No 81
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.13 E-value=19 Score=44.03 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=17.0
Q ss_pred hHHHHHhhcchhhHHHhhhhHHHHHHHHH
Q 042277 405 NKVRELEANSDSKYQRWSRKESIYQSFMD 433 (899)
Q Consensus 405 ~~~~~le~~~~~~~~~~~~~~~~~~~~~~ 433 (899)
.||..+++........|+..+.++...+.
T Consensus 644 RQIE~lQ~tl~~~~tawereE~~l~~rL~ 672 (961)
T KOG4673|consen 644 RQIEALQETLSKAATAWEREERSLNERLS 672 (961)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 34555666556666677776665544333
No 82
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.00 E-value=4.9 Score=53.17 Aligned_cols=44 Identities=9% Similarity=0.245 Sum_probs=20.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 042277 419 QRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLY 465 (899)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~ 465 (899)
..|+..+......+.....+++..+.. .++++..++..|..++.
T Consensus 721 ~~~~~~~~~~d~~i~~i~~~i~~~~~~---~~~~~~~le~~~~~eL~ 764 (1201)
T PF12128_consen 721 AQWQELEAELDEQIEQIKQEIAAAKQE---AKEQLKELEQQYNQELA 764 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443 33344444444444444
No 83
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.96 E-value=12 Score=41.12 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042277 340 DDDVAKLMKEKDQQMLENLALKQELEMAK 368 (899)
Q Consensus 340 ~~~~~~l~~eke~~~~e~~~LkqeL~~~k 368 (899)
+.++..|..+.++.+..+...+.+|..+.
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666665544
No 84
>PLN03188 kinesin-12 family protein; Provisional
Probab=93.96 E-value=13 Score=48.35 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=31.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhHHHHHHHHhhhhhhhhhcCC
Q 042277 442 LRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAG---------------------AAENYHAVLAENRRLFNEVQDLKG 500 (899)
Q Consensus 442 l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~---------------------~~~~y~~~~~e~R~l~N~iqelkG 500 (899)
|-+++..+|.+-++..+.++++-..|...|+.-++ |.+++..+..|+-++|.+|..||-
T Consensus 1160 laae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkr 1239 (1320)
T PLN03188 1160 LAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKR 1239 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555544443333 223334444566677777776664
No 85
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.85 E-value=17 Score=42.59 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhh
Q 042277 265 LRKVVQEIERRISTQADHLRTQNN 288 (899)
Q Consensus 265 ~~~~~~~~e~~~~~~~~~~~~~~~ 288 (899)
|.--+.+|-+-|-+|.+.+++||.
T Consensus 258 lk~~f~~~~~~i~~~i~~lk~~n~ 281 (622)
T COG5185 258 LKLGFEKFVHIINTDIANLKTQND 281 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566668889999998874
No 86
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.85 E-value=17 Score=46.80 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=11.3
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHHH
Q 042277 300 RIRVLEALASGTGEETEIVMNQLQQ 324 (899)
Q Consensus 300 ~~~~~e~~~~~~~~~~~~~~~~l~~ 324 (899)
|...|+.-|..++.+.+.++.+.+.
T Consensus 1543 ra~~L~s~A~~a~~~A~~v~~~ae~ 1567 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAED 1567 (1758)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444454444444444444433
No 87
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.79 E-value=20 Score=43.14 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=23.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 438 ALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKAL 474 (899)
Q Consensus 438 ~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l 474 (899)
.|..+.......|++....+.++.-+++.|+.++..+
T Consensus 468 el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l 504 (581)
T KOG0995|consen 468 ELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNL 504 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666667777777777777666544
No 88
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.77 E-value=10 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 042277 389 FEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~~l 410 (899)
++.++.++...++.++..+.++
T Consensus 886 le~~L~el~~el~~l~~~~~~~ 907 (1311)
T TIGR00606 886 FEEQLVELSTEVQSLIREIKDA 907 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 89
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=93.70 E-value=8.7 Score=40.81 Aligned_cols=64 Identities=8% Similarity=0.082 Sum_probs=46.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhc
Q 042277 350 KDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEAN 413 (899)
Q Consensus 350 ke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~ 413 (899)
.+.....+..|.+.+.......+.+...+...|..-..+|+.+.-+-+..+..++.++..+..+
T Consensus 13 ~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~ 76 (206)
T PF14988_consen 13 DEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEF 76 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445666777777777777777777777778777777777777777777777777777776553
No 90
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.67 E-value=27 Score=44.36 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhh
Q 042277 263 CLLRKVVQEIERRISTQ 279 (899)
Q Consensus 263 ~~~~~~~~~~e~~~~~~ 279 (899)
.-+..+++.||-|+.+-
T Consensus 187 ekI~ell~yieerLreL 203 (1200)
T KOG0964|consen 187 EKINELLKYIEERLREL 203 (1200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556677777777654
No 91
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.59 E-value=7 Score=49.40 Aligned_cols=145 Identities=21% Similarity=0.249 Sum_probs=65.5
Q ss_pred HhhcCCchhhHHHHHHHHHHHhhhhhHHHhhhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 042277 306 ALASGTGEETEIVMNQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGA 385 (899)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~~~e~~k~ee~~~~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~ 385 (899)
+|..|...-...+.-+||.++.-..+.+...+ +=.++.+..+..+.....-..|+++|+......-. ++++++..
T Consensus 660 tlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~-el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l----~~~r~~~~ 734 (1174)
T KOG0933|consen 660 TLTGGSRSKGADLLRQLQKLKQAQKELRAIQK-ELEALERELKSLEAQSQKFRDLKQQLELKLHELAL----LEKRLEQN 734 (1174)
T ss_pred cccCCCCCCcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcC
Confidence 34455554445566777777754343333321 11223333333444444455556655432221111 11111111
Q ss_pred -hhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042277 386 -KSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISK 455 (899)
Q Consensus 386 -~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~ 455 (899)
-..+...++++...+++++.++++.+...-.....+...|+.+......+.+.+.+|...+...++.+.+
T Consensus 735 e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 735 EFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEE 805 (1174)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 1123344444555555555555554443333333444445555555555555566665555555555543
No 92
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.46 E-value=31 Score=46.92 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=27.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 042277 439 LRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAEN 488 (899)
Q Consensus 439 l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~ 488 (899)
+..++..+......+..++..|..++-..+...+.|....+.|+.+..+.
T Consensus 1027 ~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~ 1076 (1822)
T KOG4674|consen 1027 IEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDEL 1076 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444434333344445577777777666666666666555555555443
No 93
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.37 E-value=12 Score=45.21 Aligned_cols=15 Identities=47% Similarity=0.667 Sum_probs=12.0
Q ss_pred HHHHhhhhhhhhhcC
Q 042277 485 LAENRRLFNEVQDLK 499 (899)
Q Consensus 485 ~~e~R~l~N~iqelk 499 (899)
+..+|+|-+++-.|+
T Consensus 382 l~knr~lq~e~a~Lr 396 (629)
T KOG0963|consen 382 LEKNRKLQNENASLR 396 (629)
T ss_pred HHHHhhhhHHHHHHh
Confidence 466899999888776
No 94
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.25 E-value=22 Score=45.27 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchh
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKK---TYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDS 416 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~---~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~ 416 (899)
.++.++..+.+....++.++++++.+..+ .-+..+..+|...++++..-+.+.++++..+...+.++.+.....+.
T Consensus 734 ~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek 812 (1174)
T KOG0933|consen 734 NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEK 812 (1174)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556566655544433 34455667888888888888888888888887777777665444333
No 95
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.23 E-value=25 Score=43.57 Aligned_cols=16 Identities=13% Similarity=-0.122 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 042277 23 EVEAKQRALLIEWLNS 38 (899)
Q Consensus 23 ~~~a~r~~e~~~Wi~~ 38 (899)
+....|.-++...|..
T Consensus 37 edlk~r~L~aeniiqd 52 (1265)
T KOG0976|consen 37 EDLKKRLLDAENIIQD 52 (1265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444445444443
No 96
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.12 E-value=26 Score=42.91 Aligned_cols=20 Identities=40% Similarity=0.413 Sum_probs=14.0
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 042277 256 EIPHRVACLLRKVVQEIERR 275 (899)
Q Consensus 256 ~~~~~~~~~~~~~~~~~e~~ 275 (899)
|.-.||+.+=+||--=+--|
T Consensus 406 e~~QRva~lEkKvqa~~kER 425 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQALTKER 425 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 44568899999996655444
No 97
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.96 E-value=19 Score=48.69 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=14.8
Q ss_pred hhhhhhhcCCCCCCCCccHHHHHHHhhh
Q 042277 220 KITEMMKSTSLDNAPTQSLLSVVNGILD 247 (899)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (899)
++..|++ +++--.|...+-.-|+..|.
T Consensus 196 kF~kLf~-taiy~~i~~~i~~fl~~yll 222 (1486)
T PRK04863 196 KFYRLIE-ASLYGGISSAITRSLRDYLL 222 (1486)
T ss_pred HHHHHHH-HHHHhhHHHhHHHHHHHHcC
Confidence 3544544 23444555666666666665
No 98
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.82 E-value=16 Score=45.71 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=5.6
Q ss_pred hhhhhcCCCE
Q 042277 493 NEVQDLKGNI 502 (899)
Q Consensus 493 N~iqelkGnI 502 (899)
.+|.|||..|
T Consensus 643 ~ei~~lk~ki 652 (697)
T PF09726_consen 643 KEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHH
Confidence 3566666544
No 99
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.80 E-value=0.13 Score=60.38 Aligned_cols=94 Identities=23% Similarity=0.286 Sum_probs=59.5
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccch----hHHHHHHHHHhhh
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGV----NYRALNDLFNLSQ 621 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GI----ipRal~~LF~~~~ 621 (899)
.|....-|.|.-.|-. .+..||+.+-.|...- .-.|.|||||||||-.--.. -..|-| +--...+||....
T Consensus 4 ~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~-~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAK-VQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHH---HHHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHH-hCCCeEEEecchhHHHHHHHHHH
Confidence 5777777888877743 3456666666665443 35799999999999641000 000111 1123456777666
Q ss_pred ccCCCeeEEEEEEEEEEeccccc
Q 042277 622 NRRSSIMYEVAVQMVEIYNEQVR 644 (899)
Q Consensus 622 ~~~~~~~~~V~vS~lEIYnE~V~ 644 (899)
.--+.......|||+.-|+-.-|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 66666778899999999976543
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.71 E-value=0.037 Score=58.83 Aligned_cols=50 Identities=20% Similarity=0.445 Sum_probs=32.9
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.|+||.-+.. .+++..|..+..+...--..||. +|-||++|+||||-|.+
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 4899987753 44667776666555552223455 78899999999998754
No 101
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.71 E-value=11 Score=42.60 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=9.0
Q ss_pred CCCCccHHHHHHHhh
Q 042277 232 NAPTQSLLSVVNGIL 246 (899)
Q Consensus 232 ~~~~~~~~~~~~~~~ 246 (899)
+.+..||..+|.+..
T Consensus 50 ~~~~~sl~~~~~A~~ 64 (325)
T PF08317_consen 50 DEEPPSLEDYVVAGY 64 (325)
T ss_pred CCCCCCHHHHHHHhc
Confidence 345566666666664
No 102
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.70 E-value=15 Score=45.05 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=12.3
Q ss_pred HHHHHHHhhhhhhhhhcCCC
Q 042277 482 HAVLAENRRLFNEVQDLKGN 501 (899)
Q Consensus 482 ~~~~~e~R~l~N~iqelkGn 501 (899)
.+++...|.|-.+|..+.|.
T Consensus 508 ~KIl~DTr~lQkeiN~l~gk 527 (594)
T PF05667_consen 508 EKILSDTRELQKEINSLTGK 527 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777666653
No 103
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.49 E-value=25 Score=47.74 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhcCCCEEEE
Q 042277 454 SKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVY 505 (899)
Q Consensus 454 ~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqelkGnIrV~ 505 (899)
..++..+..--..+...++.+......|+.....++.+++++..+.-.|...
T Consensus 436 e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdl 487 (1822)
T KOG4674|consen 436 ERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDL 487 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555455566666666777777777777777777777766555443
No 104
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=12 Score=44.52 Aligned_cols=162 Identities=16% Similarity=0.162 Sum_probs=75.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH--------------HHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q 042277 346 LMKEKDQQMLENLALKQELEMAKKTYELRCLHM--------------ETEYKGAKSGFEERIKELEHLLQVSRNKVRELE 411 (899)
Q Consensus 346 l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~l--------------e~~~~~~~~~le~~i~ele~~l~~~~~~~~~le 411 (899)
|.+..+..+.+...++.+|+.+++.+-+...+- -++-..-...|-.+|-+|+.+|..+++.+...+
T Consensus 48 Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q 127 (772)
T KOG0999|consen 48 LKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQ 127 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555666666666555443332211 111111122366778888888888887777665
Q ss_pred hcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 042277 412 ANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHAD---DLYCLGVRLKALAGAAENYHAVLAEN 488 (899)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~---~~~~l~~~l~~l~~~~~~y~~~~~e~ 488 (899)
+..+.- .+..+.+...-.....+-..||..+...|-.-..+-..|.+ +--.|...+..|-...-.|...-.+.
T Consensus 128 ~E~erl----~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkhei 203 (772)
T KOG0999|consen 128 EENERL----EKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEI 203 (772)
T ss_pred HHHHHH----HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHH
Confidence 543322 11111111111111222233333333333322222233433 22234444445544455566655667
Q ss_pred hhhhhhhhhcCCCEEEEEecCCC
Q 042277 489 RRLFNEVQDLKGNIRVYCRIRPF 511 (899)
Q Consensus 489 R~l~N~iqelkGnIrV~~RVRP~ 511 (899)
++|..++.=|+..+-=..|+|-+
T Consensus 204 kRleEe~elln~q~ee~~~Lk~I 226 (772)
T KOG0999|consen 204 KRLEEETELLNSQLEEAIRLKEI 226 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666665555445566543
No 105
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.31 E-value=13 Score=42.85 Aligned_cols=44 Identities=34% Similarity=0.422 Sum_probs=38.1
Q ss_pred hHHHHHHHHhhcCCCc-ccccccccCCcchHHHHHHHHHHHHHhc
Q 042277 92 KIARFLTTLGKLGISR-FEMSDLEKGSMKPVINCLLNLRAEYITG 135 (899)
Q Consensus 92 NI~~FL~a~~~~Gvp~-F~~~DL~eg~~~~Vv~cl~aL~~~~~~~ 135 (899)
=|.+-|.+++++|+|. |.++=|-.|.-..|+..|-+|...+-..
T Consensus 72 ~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad~AL~~ 116 (359)
T PF10498_consen 72 TISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLADEALKR 116 (359)
T ss_pred HHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHHHHHHh
Confidence 4677888999999997 9999999999888888888888887664
No 106
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.22 E-value=32 Score=41.37 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=8.4
Q ss_pred cchhhhhccccCCCC
Q 042277 202 FHEVFQLKQGCYADL 216 (899)
Q Consensus 202 ~~~~~~~~~~~~~~~ 216 (899)
|..+.-+.||.|..+
T Consensus 130 f~~~v~l~q~~f~~f 144 (562)
T PHA02562 130 FKQIVVLGTAGYVPF 144 (562)
T ss_pred HhHHheeccCchhhH
Confidence 333444667777554
No 107
>PRK03918 chromosome segregation protein; Provisional
Probab=92.16 E-value=43 Score=42.70 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=17.0
Q ss_pred hhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcc
Q 042277 794 KLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVE 839 (899)
Q Consensus 794 KLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~ 839 (899)
.|..+|...... ..+++|++-.+ + .+.+|.++-.+.
T Consensus 832 ~l~~~l~~~~~~-~~~iiiith~~------~---~~~~~d~~~~l~ 867 (880)
T PRK03918 832 KLVDIMERYLRK-IPQVIIVSHDE------E---LKDAADYVIRVS 867 (880)
T ss_pred HHHHHHHHHHhc-CCEEEEEECCH------H---HHHhCCeEEEEE
Confidence 344455544332 23555555333 2 235676665544
No 108
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.96 E-value=3.7 Score=44.83 Aligned_cols=135 Identities=24% Similarity=0.314 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh----------HHHHHHHHHHHHHHHHhHHHH
Q 042277 340 DDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSG----------FEERIKELEHLLQVSRNKVRE 409 (899)
Q Consensus 340 ~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~----------le~~i~ele~~l~~~~~~~~~ 409 (899)
+.-+.+|++++.+..-.+.+|..-|...|++++....+ +...+.+ |+...+-|...+.-...++.-
T Consensus 24 E~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e----~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~ 99 (307)
T PF10481_consen 24 EQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE----YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh----hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 35678888999999999999998888888877765432 2233333 222333333333333333332
Q ss_pred HhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---------------------HHH
Q 042277 410 LEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLY---------------------CLG 468 (899)
Q Consensus 410 le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~---------------------~l~ 468 (899)
++. .++....+|+.|...+...|.++...|......-. ..+
T Consensus 100 lEg------------------Ql~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~ 161 (307)
T PF10481_consen 100 LEG------------------QLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSD 161 (307)
T ss_pred HHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhh
Confidence 222 23333445666777777777777766654331110 111
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhhhcC
Q 042277 469 VRLKALAGAAENYHAVLAENRRLFNEVQDLK 499 (899)
Q Consensus 469 ~~l~~l~~~~~~y~~~~~e~R~l~N~iqelk 499 (899)
..+ -+..+.|...+.||++|.-++.-|.
T Consensus 162 sk~---e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 162 SKY---EELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hhH---HHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 222 2346789999999999998887775
No 109
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.93 E-value=15 Score=36.85 Aligned_cols=68 Identities=24% Similarity=0.275 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 340 DDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 340 ~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
++++.-|.+.......++..+...|..++...+.--.... .-..|..+|+.||..|+.+...+.+..+
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~-----~~E~l~rriq~LEeele~ae~~L~e~~e 101 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS-----NAEQLNRRIQLLEEELEEAEKKLKETTE 101 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666666666655555444222111 1126888888888888888877766533
No 110
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.90 E-value=12 Score=46.92 Aligned_cols=100 Identities=20% Similarity=0.249 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQR 420 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~ 420 (899)
..+..++.++++...++..++++.+.++.+.+. |.+|++++...-+.+.+.+..+-.....+.-.
T Consensus 565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~---------------LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~ 629 (717)
T PF10168_consen 565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEK---------------LAERYEEAKDKQEKLMKRVDRVLQLLNSQLPV 629 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 466777788888888888888777666544332 22233333333333333332221111111112
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042277 421 WSRKESIYQSFMDLQHGALRELRFSSDSIKQEISK 455 (899)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~ 455 (899)
+...|..+...++....+++.|+..++++|..+..
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444445555555566666666666555543
No 111
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.79 E-value=13 Score=48.17 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=12.2
Q ss_pred HHHHHhch---hhHHHHHHh
Q 042277 52 EELRACLI---DGTVLCQIL 68 (899)
Q Consensus 52 e~f~~~Lk---dG~iLC~l~ 68 (899)
.||..||| ||+|.|..+
T Consensus 217 ADFGsClkm~~dG~V~s~~a 236 (1317)
T KOG0612|consen 217 ADFGSCLKMDADGTVRSSVA 236 (1317)
T ss_pred ccchhHHhcCCCCcEEeccc
Confidence 46777775 888888654
No 112
>PRK09039 hypothetical protein; Validated
Probab=91.66 E-value=14 Score=42.18 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=19.5
Q ss_pred cHHHHHHHhhhccccccCCCCchHHHHHHHHHHHHHHHHhhh
Q 042277 237 SLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRIST 278 (899)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 278 (899)
.|++||--+|. |=.++-+.|+.-+...+..+..
T Consensus 25 ~ll~~~~f~l~---------~f~~~q~fLs~~i~~~~~eL~~ 57 (343)
T PRK09039 25 TLLLVIMFLLT---------VFVVAQFFLSREISGKDSALDR 57 (343)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHhhHHHHHHH
Confidence 46667666665 4455566666666555555443
No 113
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.58 E-value=21 Score=37.97 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=41.9
Q ss_pred HHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 042277 370 TYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSI 449 (899)
Q Consensus 370 ~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 449 (899)
.|...+.+.+.+|...+..-++++......++..+.+...-- ..++..+...+-.++-|..++.+-
T Consensus 122 ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~--------------~aLqa~lkk~e~~~~SLe~~LeQK 187 (207)
T PF05010_consen 122 EYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAEL--------------LALQASLKKEEMKVQSLEESLEQK 187 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666655555555444432210 111222222233344455555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042277 450 KQEISKAQKSHADDLYCLG 468 (899)
Q Consensus 450 k~~~~~~q~~~~~~~~~l~ 468 (899)
.++..++.+.+-+-+..+|
T Consensus 188 ~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 188 TKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5566666655555554443
No 114
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.48 E-value=8.4 Score=41.80 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHH------hhhhhhhHhhhhhhhhhhHHhhhhHHHHHHHhhcCCch
Q 042277 263 CLLRKVVQEIERR------ISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGE 313 (899)
Q Consensus 263 ~~~~~~~~~~e~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 313 (899)
..|.|+..|+|+- +-.-.+.+++|-.-+.....+...||...|-..++-++
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~ 87 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD 87 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4556666666653 12233556666666666666667777766665554443
No 115
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.24 E-value=43 Score=40.87 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042277 340 DDDVAKLMKEKDQQMLENLALKQELEMAKKTYE 372 (899)
Q Consensus 340 ~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e 372 (899)
++...++.+...+....+..|+.+++.++++|.
T Consensus 309 ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 309 EKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 455666777777778888888888887777754
No 116
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.16 E-value=52 Score=42.52 Aligned_cols=33 Identities=33% Similarity=0.335 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 042277 338 LEDDDVAKLMKEKDQQMLENLALKQELEMAKKT 370 (899)
Q Consensus 338 ~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~ 370 (899)
...++..++++..+....++..++.++..++..
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666655554
No 117
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.62 E-value=10 Score=47.39 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=5.7
Q ss_pred cccccccc
Q 042277 108 FEMSDLEK 115 (899)
Q Consensus 108 F~~~DL~e 115 (899)
|+++||+-
T Consensus 342 ~E~VeLel 349 (717)
T PF10168_consen 342 LETVELEL 349 (717)
T ss_pred EEEEeecc
Confidence 78887763
No 118
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.49 E-value=30 Score=43.70 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=38.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhcCCCEEE
Q 042277 437 GALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRV 504 (899)
Q Consensus 437 ~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqelkGnIrV 504 (899)
.++++|...+..+++++..+... |...-..|.+..........|||+--.++-+||.--.+
T Consensus 664 ~qleeL~~~l~k~~~Eld~l~~q-------L~ssq~~L~e~d~~L~~le~Errk~lEE~l~mKqeal~ 724 (775)
T PF10174_consen 664 KQLEELEAALEKLRQELDQLKAQ-------LESSQQSLMERDQELNALEAERRKQLEEVLEMKQEALL 724 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 46777777777777766655432 22333345555555566678888888888889854433
No 119
>PRK06620 hypothetical protein; Validated
Probab=90.27 E-value=0.12 Score=54.92 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=34.9
Q ss_pred eeEEeceeeCCCCChhhHHhchHHHHHHHHcCCC---eeEeeccccCCcccceeec
Q 042277 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYN---VCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 545 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN---~cIfAYGQTGSGKTyTM~G 597 (899)
..|+||..+...+ +...|..++.+.+. -|+| -.++-||++||||||.+..
T Consensus 11 ~~~tfd~Fvvg~~-N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFIVSSS-NDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhEeccc-HHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 3588998875444 45577776555432 1444 3589999999999999863
No 120
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.22 E-value=26 Score=36.70 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhc
Q 042277 388 GFEERIKELEHLLQVSRNKVRELEAN 413 (899)
Q Consensus 388 ~le~~i~ele~~l~~~~~~~~~le~~ 413 (899)
.+..++++|-..-..++.++-..+.+
T Consensus 120 ~lk~~~~eL~~~~~~Lq~Ql~~~e~l 145 (193)
T PF14662_consen 120 GLKKRSKELATEKATLQRQLCEFESL 145 (193)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35556666655556666666555443
No 121
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.15 E-value=71 Score=41.53 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=16.0
Q ss_pred CCCCccHHHHHHHhhhccccccCCCC
Q 042277 232 NAPTQSLLSVVNGILDESVDRKNGEI 257 (899)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (899)
.|...|+-+|.+.+|+-.|---|++|
T Consensus 1488 ~adp~si~~vA~~vL~l~lp~tpeqi 1513 (1758)
T KOG0994|consen 1488 DADPDSIEEVAEEVLALELPLTPEQI 1513 (1758)
T ss_pred CCCHHHHHHHHHHHHhccCCCCHHHH
Confidence 45567788888899874443333333
No 122
>PRK06893 DNA replication initiation factor; Validated
Probab=90.09 E-value=0.17 Score=53.96 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=32.8
Q ss_pred eeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 545 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..++||..++... ..-+ ..+.+..-+++|.+++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 3588999996542 2111 2222333357888899999999999999865
No 123
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.93 E-value=53 Score=39.74 Aligned_cols=13 Identities=31% Similarity=0.324 Sum_probs=8.8
Q ss_pred CCCccHHHHHHHh
Q 042277 233 APTQSLLSVVNGI 245 (899)
Q Consensus 233 ~~~~~~~~~~~~~ 245 (899)
+|++|.-.-|.-.
T Consensus 2 apf~SVk~Avs~F 14 (522)
T PF05701_consen 2 APFESVKEAVSLF 14 (522)
T ss_pred CCChHHHHHHHHc
Confidence 6888876666543
No 124
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=89.84 E-value=51 Score=39.38 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=18.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 440 RELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAG 476 (899)
Q Consensus 440 ~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~ 476 (899)
.-|+.++...++.+......-..+...|...++.|.+
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ 179 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444455555555543
No 125
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.81 E-value=35 Score=43.82 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=18.3
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhhhhHHhhh
Q 042277 269 VQEIERRISTQADHLRTQNNLFKTREEKYQ 298 (899)
Q Consensus 269 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (899)
++.+++.|+-|-+.+-.+..+++..++--+
T Consensus 271 ~~~~Dk~i~~ke~~l~erp~li~~ke~~~~ 300 (1141)
T KOG0018|consen 271 LQKVDKKISEKEEKLAERPELIKVKENASH 300 (1141)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhcchhhcc
Confidence 445666666666666666566666655544
No 126
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.78 E-value=0.16 Score=56.24 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
.|++..+++--++.|+.-|+||||||+||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 578888999999999999999999999984
No 127
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.76 E-value=40 Score=38.14 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=8.2
Q ss_pred chhhHHHHHHHHHHH
Q 042277 312 GEETEIVMNQLQQIK 326 (899)
Q Consensus 312 ~~~~~~~~~~l~~~~ 326 (899)
.+......++++-++
T Consensus 114 ~d~r~~m~~q~~~vK 128 (325)
T PF08317_consen 114 PDMRLLMDNQFQLVK 128 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445556666655
No 128
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=89.51 E-value=0.82 Score=53.64 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc--ccccccCCCcc---hhhhhHHHHHHHHhhcCCC
Q 042277 32 LIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASV--DEANYSYNSSM---SRSGKIARFLTTLGKLGIS 106 (899)
Q Consensus 32 ~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~~~~~~~~---~~~ENI~~FL~a~~~~Gvp 106 (899)
.+-||.. +|. .|...++-+-|+||.||-.+..+|.||+| ++++.+|.+.. +..||-..-.+-.+.++..
T Consensus 393 fr~WmNS-lgv-----~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~~~~~kklENcNyav~lGk~~~FS 466 (627)
T KOG0046|consen 393 FRLWMNS-LGV-----NPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPLKMPFKKVENCNYAVKLGKQLKFS 466 (627)
T ss_pred HHHHHHh-cCC-----cHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcccccHHHhhcchHHHHHHhhccee
Confidence 4679997 464 35678899999999999999999999999 66665543322 3346655554444555543
Q ss_pred --cccccccccCC
Q 042277 107 --RFEMSDLEKGS 117 (899)
Q Consensus 107 --~F~~~DL~eg~ 117 (899)
...-.|+++|+
T Consensus 467 LVgi~G~DI~dGN 479 (627)
T KOG0046|consen 467 LVGIAGQDIVDGN 479 (627)
T ss_pred eeccccccccccc
Confidence 37788999998
No 129
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.31 E-value=9.2 Score=48.01 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhc
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEAN 413 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~ 413 (899)
++..++.+....+..+..|+.+|..++++-..-..+++.. +.....++.+..+++.++..+..++..|+..
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~-~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAM-KESYESLETRLKDLEAEAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555554444333322222221 1112234445555555555555555555443
No 130
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.00 E-value=44 Score=37.58 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcch--hhHHH
Q 042277 343 VAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSD--SKYQR 420 (899)
Q Consensus 343 ~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~--~~~~~ 420 (899)
+.+|.+.......+...+..+|+.+++.--.....|+.+-+-....|..+...|+..-..++.++..- .+. +-...
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~--~s~~~s~~d~ 214 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP--VSAPPSPRDT 214 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCcchH
Confidence 45666666666555555555665554433333334444444444445555555555444444433210 011 11100
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 042277 421 WSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCL 467 (899)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l 467 (899)
... ............++..|+.....+|+.+...+..+...+...
T Consensus 215 ~~~--~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~ 259 (310)
T PF09755_consen 215 VNV--SEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQY 259 (310)
T ss_pred Hhh--cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000011233455678888888888888888877776655443
No 131
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=88.97 E-value=62 Score=39.16 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=28.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhhhhhHhhhhhhhhh
Q 042277 255 GEIPHRVACLLRKVVQEIERRISTQADHLRTQNNLFKT 292 (899)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 292 (899)
--||..|---+.+-++++.|++.++.+++..+-+..+.
T Consensus 329 k~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~ 366 (607)
T KOG0240|consen 329 KTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEK 366 (607)
T ss_pred ccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34677766667777899999999999998877554443
No 132
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.67 E-value=0.21 Score=60.57 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=37.0
Q ss_pred ceeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 544 QRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 544 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
...|+||..+-..+ +..+|..+..++...-.+||. ||-||.+|+||||-+..
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 35699997774443 445665555555544456786 89999999999999865
No 133
>PRK01156 chromosome segregation protein; Provisional
Probab=88.49 E-value=87 Score=40.28 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhhhcCCCEEEEEecCCCC
Q 042277 469 VRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFL 512 (899)
Q Consensus 469 ~~l~~l~~~~~~y~~~~~e~R~l~N~iqelkGnIrV~~RVRP~~ 512 (899)
..+..|...-......+.+.+.-.+++....|.+. .|=++|.-
T Consensus 416 ~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~~~~Cp~c 458 (895)
T PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQSVCPVC 458 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCC
Confidence 33333333333333334444445555665556666 47777763
No 134
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.45 E-value=42 Score=36.55 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=7.7
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 042277 352 QQMLENLALKQELEMAKKT 370 (899)
Q Consensus 352 ~~~~e~~~LkqeL~~~k~~ 370 (899)
+...++..|+-+++..|.+
T Consensus 63 dl~t~nqrl~~E~e~~Kek 81 (333)
T KOG1853|consen 63 DLETRNQRLTTEQERNKEK 81 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 135
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.44 E-value=0.24 Score=53.16 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=32.5
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.|+||.-+.. .+...+..+..++. ......++-||++|+||||.+.+
T Consensus 18 ~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 18 DETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred cCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 4788876644 55667766555433 22234789999999999999864
No 136
>PRK12377 putative replication protein; Provisional
Probab=88.43 E-value=0.23 Score=53.96 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=36.6
Q ss_pred EeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 548 KFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 548 ~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
+||........|..++..+..+++....+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 455544445567778887778888777654 4678899999999999865
No 137
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.32 E-value=27 Score=34.28 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=8.4
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 042277 436 HGALRELRFSSDSIKQEIS 454 (899)
Q Consensus 436 ~~~l~~l~~~~~~~k~~~~ 454 (899)
...|...+.+|..-|..+.
T Consensus 86 ~~~l~~~e~sw~~qk~~le 104 (132)
T PF07926_consen 86 KAELEESEASWEEQKEQLE 104 (132)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3344444444444444443
No 138
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.10 E-value=0.35 Score=59.50 Aligned_cols=89 Identities=38% Similarity=0.705 Sum_probs=63.1
Q ss_pred ceeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhcc
Q 042277 544 QRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNR 623 (899)
Q Consensus 544 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~ 623 (899)
...+.|+++..+...+.--+....+.+..++++++.. +|++|++.+.. ...|+.-+....++......
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 92 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSN----QPGGLLARLFKELIDLANSD 92 (670)
T ss_pred ccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhc----CcchhHHHhhhhcccccccC
Confidence 3568888888887777777777778888888888876 89999999843 33466666666665543222
Q ss_pred CCCeeEEEEEEEEEEecccccccccCcc
Q 042277 624 RSSIMYEVAVQMVEIYNEQVRDLLTNDV 651 (899)
Q Consensus 624 ~~~~~~~V~vS~lEIYnE~V~DLL~~~~ 651 (899)
... ..++.|++.+.|++..-.
T Consensus 93 ~~~-------~~~~~~~~~~~~~~~~~q 113 (670)
T KOG0239|consen 93 KTS-------NVVEAYNERLRDLLSELQ 113 (670)
T ss_pred CCc-------hhHHHHHHHHhhhccccc
Confidence 221 167889999999987543
No 139
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.00 E-value=40 Score=35.79 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=11.1
Q ss_pred HhHHHHHHHHhhhhhhhh
Q 042277 479 ENYHAVLAENRRLFNEVQ 496 (899)
Q Consensus 479 ~~y~~~~~e~R~l~N~iq 496 (899)
.+|-.+...+|.|-..|+
T Consensus 184 ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 184 QNYVQMYQRNQALERELR 201 (202)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356566666777766654
No 140
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.00 E-value=28 Score=43.44 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 849 GRDVRELMEQVASLKDTIAKKDDEIERLQL 878 (899)
Q Consensus 849 ~~~~~~L~eqv~~Lk~~i~~~~~e~e~lq~ 878 (899)
..+...|++||-.||..+..+++.|..|+.
T Consensus 582 d~d~e~l~eqilKLKSLLSTKREQIaTLRT 611 (717)
T PF09730_consen 582 DKDKEELQEQILKLKSLLSTKREQIATLRT 611 (717)
T ss_pred cccHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777766654
No 141
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.84 E-value=79 Score=39.04 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKG 384 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~ 384 (899)
....+.+++.+++......|+.+|+.++......-.+++.++.+
T Consensus 527 ~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~k 570 (786)
T PF05483_consen 527 KQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDK 570 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456777777888888888888887777766666666555544
No 142
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.77 E-value=0.27 Score=57.93 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=28.1
Q ss_pred hHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 566 TQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 566 v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
....+..++..-++-|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34567888899999999999999999999975
No 143
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.75 E-value=0.33 Score=56.12 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.1
Q ss_pred CeeEeeccccCCccccee
Q 042277 578 NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM 595 (899)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 446889999999999765
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.63 E-value=6.8 Score=45.55 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKV 407 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~ 407 (899)
.+.++.+++.+...++..|...+.. +..++.++++.++++...++++|++|+..|.++.-.+
T Consensus 390 k~~k~~kel~~~~E~n~~l~knq~v----w~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 390 KLKKCQKELKEEREENKKLIKNQDV----WRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 3445555555555444455444433 3344445666666677777777777776665554444
No 145
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=87.41 E-value=43 Score=35.60 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEH 398 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~ 398 (899)
+++..|..-++....+|.+|+.++..++..|.....+++.+.-..+..|+.+..+...
T Consensus 71 q~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i 128 (206)
T PF14988_consen 71 QALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKI 128 (206)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455667778888999999999999999999999999999999999999888765554
No 146
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.34 E-value=25 Score=43.88 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042277 434 LQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHA 483 (899)
Q Consensus 434 ~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~ 483 (899)
.....+..|+..+..+|.++...+..|.++...+...++.|......+.+
T Consensus 363 vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 363 VAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666666666666666666555444444
No 147
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.09 E-value=22 Score=45.05 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=8.3
Q ss_pred CCceeEEEEEEEe
Q 042277 715 SRSHSVVTVHVRG 727 (899)
Q Consensus 715 SRSH~IftI~v~~ 727 (899)
+|.|-+=.|++.+
T Consensus 634 ak~~~ln~ITl~G 646 (1200)
T KOG0964|consen 634 AKKHELNCITLSG 646 (1200)
T ss_pred HHhcCCCeEEecc
Confidence 4567766677754
No 148
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.96 E-value=1.4e+02 Score=40.88 Aligned_cols=39 Identities=10% Similarity=-0.068 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 042277 426 SIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDL 464 (899)
Q Consensus 426 ~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~ 464 (899)
.++...+.....++.+++..+..++..+...++.|..-+
T Consensus 445 enF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~ 483 (1486)
T PRK04863 445 EEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555554433
No 149
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.81 E-value=38 Score=36.84 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=12.8
Q ss_pred HHHHHHHhhhhhhhHhhhh
Q 042277 269 VQEIERRISTQADHLRTQN 287 (899)
Q Consensus 269 ~~~~e~~~~~~~~~~~~~~ 287 (899)
..|||.-+-+|..+++++|
T Consensus 43 SrE~EaelesqL~q~etrn 61 (333)
T KOG1853|consen 43 SREIEAELESQLDQLETRN 61 (333)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777665
No 150
>PRK05642 DNA replication initiation factor; Validated
Probab=86.75 E-value=0.36 Score=51.79 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=29.7
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcCC-CeeEeeccccCCcccceeec
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGY-NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdGy-N~cIfAYGQTGSGKTyTM~G 597 (899)
.|+||.-+... +...+..+..+.... .++ ...++-||++|+||||-+..
T Consensus 15 ~~tfdnF~~~~--~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 15 DATFANYYPGA--NAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred cccccccCcCC--hHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHHH
Confidence 58899888432 333333333322211 122 34688999999999998754
No 151
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.74 E-value=1.2e+02 Score=39.92 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 042277 263 CLLRKVVQEIERR 275 (899)
Q Consensus 263 ~~~~~~~~~~e~~ 275 (899)
.+.++.-++||++
T Consensus 465 ~~~keL~e~i~~l 477 (1317)
T KOG0612|consen 465 EMDKELEETIEKL 477 (1317)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555566655
No 152
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.53 E-value=38 Score=33.98 Aligned_cols=31 Identities=29% Similarity=0.269 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhhcchhhHHHhh
Q 042277 392 RIKELEHLLQVSRNKVRELEANSDSKYQRWS 422 (899)
Q Consensus 392 ~i~ele~~l~~~~~~~~~le~~~~~~~~~~~ 422 (899)
....|...++..+.++.+|+....+-...++
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3345555555556666665554333333333
No 153
>PRK09039 hypothetical protein; Validated
Probab=86.50 E-value=67 Score=36.81 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 042277 431 FMDLQHGALRELRFSSDSIKQEISKAQK---SHADDLYCLGVRLKAL 474 (899)
Q Consensus 431 ~~~~~~~~l~~l~~~~~~~k~~~~~~q~---~~~~~~~~l~~~l~~l 474 (899)
.+.....+|..||.++.++...|...+. .....+..|+..|...
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666665554433 3334445555554433
No 154
>PRK08116 hypothetical protein; Validated
Probab=86.43 E-value=0.4 Score=52.64 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=37.0
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHc--CCCeeEeeccccCCcccceeec
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLD--GYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLd--GyN~cIfAYGQTGSGKTyTM~G 597 (899)
.++||... .+..+...|..+...++.+.. ..|..++-||++|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 35676544 455666677777777777654 3456799999999999998854
No 155
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.12 E-value=0.3 Score=57.35 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=35.5
Q ss_pred ceeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 544 QRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 544 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
...|+||.-+.. .++...|..+..+... -..||. +|-||++|+||||.|..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 346899987743 4555667665544443 123675 99999999999999864
No 156
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.04 E-value=87 Score=37.69 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhH
Q 042277 262 ACLLRKVVQEIERRISTQADHL 283 (899)
Q Consensus 262 ~~~~~~~~~~~e~~~~~~~~~~ 283 (899)
-+||++-..+.|.||-||--.|
T Consensus 245 ~~llr~t~~~~e~riEtqkqtl 266 (654)
T KOG4809|consen 245 QFLLRSTDPSGEQRIETQKQTL 266 (654)
T ss_pred HHHHHhcCchHHHHHHHHHhhh
Confidence 3899999999999999995443
No 157
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.98 E-value=0.41 Score=51.96 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=34.3
Q ss_pred EEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 547 FKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.+||........|..++..+...++....|+ ..++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 3455443334556667777766666654443 3688999999999999865
No 158
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.97 E-value=29 Score=40.78 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=48.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhh
Q 042277 345 KLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRK 424 (899)
Q Consensus 345 ~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~ 424 (899)
.|.+.......++..||.+++.+-..+ ++. .+..+....|+++..++........+.+..+ .+|.+.|-.+
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i----~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~m----k~K~~~~~g~ 331 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKI----QEA-MKISQKIKTLREKWRALKSDSNKYENYVNAM----KQKSQEWPGK 331 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHhcchH
Confidence 344444445555555555553322211 111 1122233344445555544444444444333 2356666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 042277 425 ESIYQSFMDLQHGALRELRFSSDSIKQEIS 454 (899)
Q Consensus 425 ~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~ 454 (899)
-..++.-+..-..+|+-|++....++.++.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666666666666666666655553
No 159
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.83 E-value=91 Score=37.77 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcc
Q 042277 121 VINCLLNLRAEYITGGDIRPL 141 (899)
Q Consensus 121 Vv~cl~aL~~~~~~~g~~~~~ 141 (899)
+..|+--+=.|....|+.++.
T Consensus 72 ~s~c~~~I~~fL~engf~~~i 92 (581)
T KOG0995|consen 72 RSQCIRQIYNFLVENGFSHPI 92 (581)
T ss_pred HHHHHHHHHHHHHHcCCCCCh
Confidence 567787777888877777665
No 160
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.74 E-value=1.3e+02 Score=39.27 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 436 HGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGA 477 (899)
Q Consensus 436 ~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~ 477 (899)
...+.+.+.++..+++++.+++. ..+.|+..+..+..+
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~----~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEE----QINSLREELNEVKEK 430 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34455555666666666665543 444555555554443
No 161
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.40 E-value=0.37 Score=55.77 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=34.0
Q ss_pred ceeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 544 QRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 544 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
...|+||.... ...+...|..+..+...--..||. ++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n~-l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYNP-LFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCCe-EEEECCCCCcHHHHHHH
Confidence 35689998443 345555666655555442122444 77899999999999854
No 162
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=85.23 E-value=1.2e+02 Score=38.57 Aligned_cols=13 Identities=23% Similarity=-0.010 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 042277 25 EAKQRALLIEWLN 37 (899)
Q Consensus 25 ~a~r~~e~~~Wi~ 37 (899)
+..+|.+...|+.
T Consensus 44 er~~rkee~a~l~ 56 (775)
T PF10174_consen 44 ERALRKEEAAELS 56 (775)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555556665
No 163
>PRK01156 chromosome segregation protein; Provisional
Probab=85.16 E-value=1.3e+02 Score=38.81 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.8
Q ss_pred HHHHHHHhh
Q 042277 238 LLSVVNGIL 246 (899)
Q Consensus 238 ~~~~~~~~~ 246 (899)
...++..++
T Consensus 151 r~~~ld~~~ 159 (895)
T PRK01156 151 RKKILDEIL 159 (895)
T ss_pred HHHHHHHHh
Confidence 333444444
No 164
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.09 E-value=0.36 Score=54.59 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=27.4
Q ss_pred hhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 560 AEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 560 eeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..+++.+...|+.+-.+. -.++-||+||+||||.+.+
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 345555566777766554 5699999999999998865
No 165
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.96 E-value=11 Score=42.22 Aligned_cols=82 Identities=30% Similarity=0.437 Sum_probs=47.3
Q ss_pred CCCCCccHHHHHHHhhhccccccCCCCchHHHHHHHHHHHHHHHH------hhhhhhhHhhhhhhhhhhH--HhhhhHHH
Q 042277 231 DNAPTQSLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERR------ISTQADHLRTQNNLFKTRE--EKYQSRIR 302 (899)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 302 (899)
..|.-|-|-.-++.|.+ + ++ =||++-+-+|.| +.+|.+.|++| |+.+++ -|...++.
T Consensus 66 k~aa~~llq~kirk~~e----~-~e--------glr~i~es~~e~q~e~~qL~~qnqkL~nq--L~~~~~vf~k~k~~~q 130 (401)
T PF06785_consen 66 KTAAGQLLQTKIRKITE----K-DE--------GLRKIRESVEERQQESEQLQSQNQKLKNQ--LFHVREVFMKTKGDIQ 130 (401)
T ss_pred HHHHHHHHHHHHHHHHh----c-cH--------HHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHhcchHH
Confidence 34445666666666643 2 22 245555555544 56666677755 555554 22344566
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHHh
Q 042277 303 VLEALASGTGEETEIVMNQLQQIKT 327 (899)
Q Consensus 303 ~~e~~~~~~~~~~~~~~~~l~~~~~ 327 (899)
-||.|.....+|+.-+.-+|+.+..
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~ 155 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQ 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6777777777777766666666554
No 166
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.94 E-value=31 Score=40.38 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhhhhhhhHHhh
Q 042277 266 RKVVQEIERRISTQADHLRTQNNLFKTREEKY 297 (899)
Q Consensus 266 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 297 (899)
++--+|-.|+.+.+ |++|. .....-++|
T Consensus 260 ~rHweet~H~yale---l~tqr-VWDYAGDnY 287 (493)
T KOG0804|consen 260 RRHWEETGHCYALE---LETQR-VWDYAGDNY 287 (493)
T ss_pred HHHHHhhcceEEEe---eccee-eeecccchh
Confidence 45667777887776 34442 344444555
No 167
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.74 E-value=0.64 Score=48.70 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=32.9
Q ss_pred eeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 545 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..|+||....+ .+..++..++.++. .+....|+-||++|+||||...
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHH
Confidence 34778877732 44556665554432 4567789999999999999874
No 168
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.71 E-value=1.2e+02 Score=38.20 Aligned_cols=50 Identities=16% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHhhhhhhhHhhhhhhhhhhHHhhhhHHHHHHHhhcCCchhhHHHHHHHH
Q 042277 274 RRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMNQLQ 323 (899)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~ 323 (899)
+++-.|.+.++.++.-++..-+..++.+.-.-..-+...++.+.++.||.
T Consensus 667 ~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 667 RELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555444444333333333332333334444444444444
No 169
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.54 E-value=16 Score=35.70 Aligned_cols=34 Identities=32% Similarity=0.493 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHH
Q 042277 340 DDDVAKLMKEKDQQ---MLENLALKQELEMAKKTYEL 373 (899)
Q Consensus 340 ~~~~~~l~~eke~~---~~e~~~LkqeL~~~k~~~e~ 373 (899)
.+++.+++.+.+.. ..++..|+.++..++.+|+.
T Consensus 50 ~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 50 REEIVKLMEENEELRALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555433 34445555555555555544
No 170
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=84.47 E-value=0.78 Score=52.38 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.7
Q ss_pred CeeEeeccccCCcccceee
Q 042277 578 NVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~ 596 (899)
...|+-||++|+|||++.-
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458899999999998774
No 171
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=84.46 E-value=0.42 Score=56.21 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=34.4
Q ss_pred ceeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 544 QRMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 544 ~k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
...|+||.... ...+...|..+..+...--..|| .+|-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 35688987543 23555566666555544223455 478899999999999854
No 172
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.41 E-value=59 Score=34.39 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
+++..+..+-+.+......+.++-..+..+++.-+.+...+..--..-|+.++..+...++....++.++-.
T Consensus 100 k~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443333334555665555555555555555433
No 173
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.32 E-value=0.44 Score=56.19 Aligned_cols=50 Identities=24% Similarity=0.378 Sum_probs=33.7
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.|+||..+... ++...|..+..++..--..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999877544 455567655555432111245 478999999999999854
No 174
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.28 E-value=0.66 Score=49.03 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=31.9
Q ss_pred eeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 545 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..|+||.+++.. ...++..+..++.. .+.+..++-||++||||||.+..
T Consensus 13 ~~~~~d~f~~~~--~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred ChhhhcccccCC--cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 458899988322 23344444444442 23456789999999999998743
No 175
>PRK09087 hypothetical protein; Validated
Probab=84.25 E-value=0.56 Score=50.18 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=32.0
Q ss_pred eeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 545 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..|+||..+...++ ..+|..+. ....-.|..++-||++||||||-+..
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l~----~~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLVD----HWPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCCChhceeecCch-HHHHHHHH----hcccCCCCeEEEECCCCCCHHHHHHH
Confidence 35789988854444 44666432 22222355689999999999999853
No 176
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=83.74 E-value=1.5e+02 Score=38.38 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHhhhhhH
Q 042277 313 EETEIVMNQLQQIKTEKSKL 332 (899)
Q Consensus 313 ~~~~~~~~~l~~~~~e~~k~ 332 (899)
.+..+...+.+.+.+|..+.
T Consensus 315 ~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 315 SERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred HhhhhHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 177
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.34 E-value=1.7e+02 Score=38.92 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHhhhhHHHHHHHhhc
Q 042277 264 LLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALAS 309 (899)
Q Consensus 264 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 309 (899)
-+.++..|+|..---+.+.-+..+++...+.++---.++..+.|+.
T Consensus 834 ~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~ 879 (1294)
T KOG0962|consen 834 SLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLAR 879 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888886666666777777777776665444555555544
No 178
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=83.17 E-value=5.4 Score=46.47 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=32.0
Q ss_pred eEEeceeeCCCCChhhHHhch-HHHHH-HHHc--C--CCeeEeeccccCCccccee
Q 042277 546 MFKFNKVFGPDATQAEVFSDT-QPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v-~pLV~-svLd--G--yN~cIfAYGQTGSGKTyTM 595 (899)
.++|+.|-+.+..-+++-+.+ .|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 366777776655555555444 35542 3443 2 2456888999999999876
No 179
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.00 E-value=91 Score=35.44 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHhhhhhhhhhc
Q 042277 452 EISKAQKSHADDLYCLGVRLKALAGAAE----NYHAVLAENRRLFNEVQDL 498 (899)
Q Consensus 452 ~~~~~q~~~~~~~~~l~~~l~~l~~~~~----~y~~~~~e~R~l~N~iqel 498 (899)
|+....-.|+.-..+|...|--+..... ..-.++.|||-|+.+|..+
T Consensus 158 El~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~ 208 (319)
T PF09789_consen 158 ELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQL 208 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555544433322211 1245667888777655544
No 180
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.66 E-value=78 Score=34.58 Aligned_cols=10 Identities=30% Similarity=0.684 Sum_probs=4.1
Q ss_pred Hhhhhhhhhh
Q 042277 488 NRRLFNEVQD 497 (899)
Q Consensus 488 ~R~l~N~iqe 497 (899)
|+.+..++..
T Consensus 146 r~~l~~~l~~ 155 (302)
T PF10186_consen 146 RRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 181
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.66 E-value=92 Score=35.28 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=6.1
Q ss_pred hhhhhhhhcCC
Q 042277 490 RLFNEVQDLKG 500 (899)
Q Consensus 490 ~l~N~iqelkG 500 (899)
.-++.+|.+.|
T Consensus 278 ~~~~~Le~l~g 288 (312)
T smart00787 278 EQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHhC
Confidence 33555666655
No 182
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=82.60 E-value=0.79 Score=49.97 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=34.9
Q ss_pred EEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 547 FKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
|.|..+-.+...+..+|..+..++..+-.|.|. +-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl--~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENL--VLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcE--EEECCCCCcHHHHHHH
Confidence 333333344557788888887777777655554 5699999999998865
No 183
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=82.57 E-value=0.73 Score=52.06 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=25.9
Q ss_pred hhhHHhchHHHHHHHHc-CCCeeEeeccccCCcccceee
Q 042277 559 QAEVFSDTQPLIRSVLD-GYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 559 QeeVF~~v~pLV~svLd-GyN~cIfAYGQTGSGKTyTM~ 596 (899)
.++-++.+...+..++. +...+++-||++|+|||+++.
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 34444444445555554 456689999999999998873
No 184
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.40 E-value=1.2e+02 Score=36.54 Aligned_cols=11 Identities=36% Similarity=0.335 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 042277 465 YCLGVRLKALA 475 (899)
Q Consensus 465 ~~l~~~l~~l~ 475 (899)
.+++..+..|.
T Consensus 388 ~elE~rl~~lt 398 (511)
T PF09787_consen 388 NELESRLTQLT 398 (511)
T ss_pred HhHHHHHhhcc
Confidence 34555555554
No 185
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.33 E-value=33 Score=39.38 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q 042277 432 MDLQHGALRELRFSSDSIKQEISKA 456 (899)
Q Consensus 432 ~~~~~~~l~~l~~~~~~~k~~~~~~ 456 (899)
+......+.+++..+..++..+...
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455666666666666666553
No 186
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.11 E-value=69 Score=33.46 Aligned_cols=56 Identities=14% Similarity=0.343 Sum_probs=37.2
Q ss_pred hhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 415 DSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVR 470 (899)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~ 470 (899)
+.|...|...+..+..++....+.|-.|=.....+|.....++.....++.++...
T Consensus 119 ~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e 174 (182)
T PF15035_consen 119 EQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAE 174 (182)
T ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44566777777778888877777777766666666666666666655555555444
No 187
>PRK10865 protein disaggregation chaperone; Provisional
Probab=82.08 E-value=47 Score=42.66 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=27.6
Q ss_pred eceeeCCCCChhhHHhchHHHHHHHHcCCC------eeEeeccccCCccccee
Q 042277 549 FNKVFGPDATQAEVFSDTQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 549 FD~VF~~~atQeeVF~~v~pLV~svLdGyN------~cIfAYGQTGSGKTyTM 595 (899)
+.+|+| |...-..+...|..+..|.. +.++-+|+||+|||++.
T Consensus 567 ~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 567 HHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred CCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 455665 44444455455555544432 56788899999999976
No 188
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=82.00 E-value=2.2 Score=49.72 Aligned_cols=108 Identities=13% Similarity=0.173 Sum_probs=73.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCc-cccccc-----cCCCcchhh
Q 042277 17 SVNINSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPAS-VDEANY-----SYNSSMSRS 90 (899)
Q Consensus 17 ~~~~~~~~~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGs-v~ki~~-----~~~~~~~~~ 90 (899)
+...|-|++=--+...+-|=...+|..-. +..--||-..-+||.++|+|||.-.|-. .+.+-. .+-+.+++|
T Consensus 115 ia~inEegelt~~~~lllwc~~~t~~y~p--~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qaf 192 (612)
T COG5069 115 IATINEEGELTKHINLLLWCDEDTGGYKP--EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAF 192 (612)
T ss_pred hhcccchhhHHhhhhhheeccccccCcCC--CccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHH
Confidence 34455555555677888898888886432 3455678888899999999999999984 343322 223457899
Q ss_pred hhHHHHHHHHhhcCCCc---ccccccccCC-cchHHHHHHHH
Q 042277 91 GKIARFLTTLGKLGISR---FEMSDLEKGS-MKPVINCLLNL 128 (899)
Q Consensus 91 ENI~~FL~a~~~~Gvp~---F~~~DL~eg~-~~~Vv~cl~aL 128 (899)
||-..|+--++-+||-. -...| |.+ |.-|+.-+.+-
T Consensus 193 e~a~k~Igi~rli~vedivnV~~pD--ERsimtyv~~y~~rf 232 (612)
T COG5069 193 ENANKVIGIARLIGVEDIVNVSIPD--ERSIMTYVSWYIIRF 232 (612)
T ss_pred HHHHHhhchHhhcCcceeeecCCcc--hHHHHHHHHHHHHHH
Confidence 99999999999999764 44444 444 65555544443
No 189
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.00 E-value=72 Score=33.59 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 042277 469 VRLKALAGAAENYHAVLA 486 (899)
Q Consensus 469 ~~l~~l~~~~~~y~~~~~ 486 (899)
.+...|..+.+.|.....
T Consensus 158 ~~i~eL~~~ieEy~~~te 175 (193)
T PF14662_consen 158 QQIEELKKTIEEYRSITE 175 (193)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344444444555554443
No 190
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=81.87 E-value=33 Score=41.77 Aligned_cols=31 Identities=6% Similarity=-0.071 Sum_probs=22.0
Q ss_pred CChhhHhhhhhcCCCcceEEEEEeCCCCCCH
Q 042277 792 NSKLTQVLQSSLGGQAKTLMFVQLNPDVNSY 822 (899)
Q Consensus 792 dSKLT~LLqdsLGGnskT~mI~~ISP~~~~~ 822 (899)
++++|++|..+|++=....+=+.++....+.
T Consensus 472 ~~~~~~~i~~~l~~i~~~~v~~~~~G~~~~p 502 (555)
T TIGR03545 472 SFEATKYILQVLKKIDVLTVDADIKGILEDP 502 (555)
T ss_pred ccHHHHHHHHHHhhCCeeEEEEeeccccCCC
Confidence 5889999999998866666666666544443
No 191
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=81.72 E-value=1.4e+02 Score=36.65 Aligned_cols=129 Identities=17% Similarity=0.239 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhhH---HHHHHHHHHHHHHHHhHHHHHhhcch-hhHHHhhhhHHHHHHHHHHHHH
Q 042277 362 QELEMAKKTYELRCLHMETEYKGAKSGF---EERIKELEHLLQVSRNKVRELEANSD-SKYQRWSRKESIYQSFMDLQHG 437 (899)
Q Consensus 362 qeL~~~k~~~e~~~~~le~~~~~~~~~l---e~~i~ele~~l~~~~~~~~~le~~~~-~~~~~~~~~~~~~~~~~~~~~~ 437 (899)
.+|...+..|+++..-...++.-...+| +++|.+++.+.+.++.++...-.... .+...+.+ ....+++..+
T Consensus 217 ~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~----~~~~L~~kd~ 292 (629)
T KOG0963|consen 217 NELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDA----LGSVLNQKDS 292 (629)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHH----HHHHHhHHHH
Confidence 3344444444444443333333333332 34666777777777766644311100 00111111 1122333444
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhh
Q 042277 438 ALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEV 495 (899)
Q Consensus 438 ~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~i 495 (899)
-++.|-..+++++.-+.+....+..++..|+..+.......+.....+.. |..|++|
T Consensus 293 ~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~-~sDYeeI 349 (629)
T KOG0963|consen 293 EIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS-RSDYEEI 349 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccHHHH
Confidence 45556666666666666666677777777777766666555555444433 3444433
No 192
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=81.57 E-value=66 Score=32.89 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHH
Q 042277 367 AKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKV 407 (899)
Q Consensus 367 ~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~ 407 (899)
.++..+.++.+++...+..+..|..++..|+.....+..++
T Consensus 72 ~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 72 LRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666666666666554444333
No 193
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=81.48 E-value=83 Score=33.96 Aligned_cols=24 Identities=46% Similarity=0.584 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 389 FEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~~le~ 412 (899)
++.++.+|+..|....+.++.++.
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555555555444
No 194
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=81.30 E-value=1.6e+02 Score=36.97 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELE 365 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~ 365 (899)
...+++.+..........|.+++.
T Consensus 483 ~nfklm~e~~~~~q~~k~L~~ek~ 506 (698)
T KOG0978|consen 483 KNFKLMSERIKANQKHKLLREEKS 506 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554443
No 195
>PRK08727 hypothetical protein; Validated
Probab=81.01 E-value=0.89 Score=48.71 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=27.8
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcCC-CeeEeeccccCCcccceeec
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGY-NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdGy-N~cIfAYGQTGSGKTyTM~G 597 (899)
.|+||.-+...+ + ....+.+ +..|+ .-.|+-||++|+||||.+..
T Consensus 15 ~~~f~~f~~~~~-n--~~~~~~~----~~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 15 DQRFDSYIAAPD-G--LLAQLQA----LAAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred cCChhhccCCcH-H--HHHHHHH----HHhccCCCeEEEECCCCCCHHHHHHH
Confidence 478888664333 2 2222222 22233 24599999999999998864
No 196
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=80.66 E-value=0.69 Score=53.71 Aligned_cols=51 Identities=20% Similarity=0.396 Sum_probs=31.2
Q ss_pred eeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 545 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..|+||...... ++.-.|..+..+-+..-.-||. ||-||.+|+||||-|..
T Consensus 82 ~~ytFdnFv~g~-~N~~A~aa~~~va~~~g~~~np-lfi~G~~GlGKTHLl~A 132 (408)
T COG0593 82 PKYTFDNFVVGP-SNRLAYAAAKAVAENPGGAYNP-LFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCchhheeeCC-chHHHHHHHHHHHhccCCcCCc-EEEECCCCCCHHHHHHH
Confidence 459999866444 4444444332222221122554 78999999999999954
No 197
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=80.59 E-value=25 Score=36.12 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=15.3
Q ss_pred HHHhHHHHHHHHhhhhhhhhh
Q 042277 477 AAENYHAVLAENRRLFNEVQD 497 (899)
Q Consensus 477 ~~~~y~~~~~e~R~l~N~iqe 497 (899)
..+.|+.+-..||++||+|.+
T Consensus 160 ~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 160 EYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888888876
No 198
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=80.52 E-value=1.2e+02 Score=35.15 Aligned_cols=22 Identities=41% Similarity=0.797 Sum_probs=15.9
Q ss_pred CCCeeEeeccccCCcccceeecCCC
Q 042277 576 GYNVCIFAYGQTGSGKTYTMSGPSG 600 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM~G~~~ 600 (899)
--|.|+|+- |.|-+.+-.||.+
T Consensus 391 a~nr~vf~~---~e~~at~~~~pss 412 (499)
T COG4372 391 ATNRCVFAT---GEGRATPRCGPSS 412 (499)
T ss_pred ccceeeecc---ccccccCccCCCC
Confidence 348999985 4677777788654
No 199
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.29 E-value=1e+02 Score=34.17 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=32.0
Q ss_pred hhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 042277 336 KKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHM 378 (899)
Q Consensus 336 ~~~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~l 378 (899)
.+..++++.+...+......+|..+++.+...+..+..+..-|
T Consensus 68 ~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 68 IDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567777888888888888888888888888777777754
No 200
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.18 E-value=1.3e+02 Score=35.40 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 042277 428 YQSFMDLQHGALRELRFSSDSIKQEIS 454 (899)
Q Consensus 428 ~~~~~~~~~~~l~~l~~~~~~~k~~~~ 454 (899)
+...+...++.+++|+..-..++.+|.
T Consensus 215 l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 215 LNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333334444444444444444444443
No 201
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.98 E-value=62 Score=31.59 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELE 365 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~ 365 (899)
+++.++..+++....|+..|-.+.+
T Consensus 37 ~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 37 EELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 202
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=79.94 E-value=1.5e+02 Score=36.08 Aligned_cols=52 Identities=33% Similarity=0.420 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh---hhhhhhhhcCC
Q 042277 449 IKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENR---RLFNEVQDLKG 500 (899)
Q Consensus 449 ~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R---~l~N~iqelkG 500 (899)
++..+.+.+..+...+..+...++.|-.+.......+.+++ +|+.-+..|+.
T Consensus 365 i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~ 419 (582)
T PF09731_consen 365 IKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKS 419 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666665555554444443 34444555443
No 203
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=79.80 E-value=1.4e+02 Score=35.44 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=34.9
Q ss_pred hhhhHHHhhhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHhhhhhHHHHHHHHHHHHHH
Q 042277 328 EKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLH---METEYKGAKSGFEERIKELEHLLQV 402 (899)
Q Consensus 328 e~~k~ee~~~~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~---le~~~~~~~~~le~~i~ele~~l~~ 402 (899)
.|.++|+-. +|-.+.+-||.+.+..+..|..-|..+++.+++-..+ |.-+++..+..|-.-.+.+-.+++.
T Consensus 367 Lk~niEeLI----edKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQq 440 (527)
T PF15066_consen 367 LKENIEELI----EDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQ 440 (527)
T ss_pred HHHHHHHHH----HhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444555432 4445555566666666666666666555544443332 3344555555544333333333333
No 204
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.66 E-value=1.1 Score=51.48 Aligned_cols=30 Identities=37% Similarity=0.589 Sum_probs=22.3
Q ss_pred hHHHHHHHHcCCCee-EeeccccCCccccee
Q 042277 566 TQPLIRSVLDGYNVC-IFAYGQTGSGKTYTM 595 (899)
Q Consensus 566 v~pLV~svLdGyN~c-IfAYGQTGSGKTyTM 595 (899)
+...+..++.|.-.. ++.||.||+|||.|+
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 344556666655444 999999999999887
No 205
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.49 E-value=1.2 Score=50.89 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=24.4
Q ss_pred hhHHhchHHHHHHHHc-CCCeeEeeccccCCccccee
Q 042277 560 AEVFSDTQPLIRSVLD-GYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 560 eeVF~~v~pLV~svLd-GyN~cIfAYGQTGSGKTyTM 595 (899)
++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3344444445555554 44567899999999999887
No 206
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=79.23 E-value=38 Score=40.56 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHH
Q 042277 348 KEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELE 397 (899)
Q Consensus 348 ~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele 397 (899)
.+.+.....+..|+.||+.+++.||.+++.|-..+......|..+-.+++
T Consensus 462 eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 462 EELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666788999999999999999999988776666655555544433
No 207
>PRK06526 transposase; Provisional
Probab=79.11 E-value=0.69 Score=50.46 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=17.5
Q ss_pred cCCCeeEeeccccCCcccceeec
Q 042277 575 DGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 575 dGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.+.| |+.||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 4555 68899999999999875
No 208
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=78.99 E-value=1.9e+02 Score=36.53 Aligned_cols=21 Identities=14% Similarity=-0.075 Sum_probs=14.5
Q ss_pred CCCeeEeeccccCCcccceee
Q 042277 576 GYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM~ 596 (899)
+..+..|+-+..|.|||++-.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~ 565 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEA 565 (754)
T ss_pred CceEEEeecCCCCCChhHHHH
Confidence 445566677778888887654
No 209
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.91 E-value=33 Score=41.58 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHhhhc
Q 042277 608 VNYRALNDLFNLSQN 622 (899)
Q Consensus 608 IipRal~~LF~~~~~ 622 (899)
=.+|.+..||..+..
T Consensus 487 r~~rglrnifgKlrR 501 (861)
T KOG1899|consen 487 RTRRGLRNIFGKLRR 501 (861)
T ss_pred cchhHHHHHHHHhhh
Confidence 456777888876543
No 210
>PRK08939 primosomal protein DnaI; Reviewed
Probab=78.90 E-value=0.87 Score=51.06 Aligned_cols=51 Identities=16% Similarity=0.313 Sum_probs=33.4
Q ss_pred EEeceeeCCCCChhhHHhchHHHHHHHHcC-CCeeEeeccccCCcccceeec
Q 042277 547 FKFNKVFGPDATQAEVFSDTQPLIRSVLDG-YNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v~pLV~svLdG-yN~cIfAYGQTGSGKTyTM~G 597 (899)
.+||.+-..+..+..++..+...++....| ..-.++-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455544333335566666555666655543 234689999999999999865
No 211
>PRK08181 transposase; Validated
Probab=78.59 E-value=1.1 Score=49.43 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=17.8
Q ss_pred cCCCeeEeeccccCCcccceeec
Q 042277 575 DGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 575 dGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 78899999999999876
No 212
>PRK12704 phosphodiesterase; Provisional
Probab=78.47 E-value=80 Score=38.28 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=9.9
Q ss_pred HHhhhhhhhhhcCC
Q 042277 487 ENRRLFNEVQDLKG 500 (899)
Q Consensus 487 e~R~l~N~iqelkG 500 (899)
.|+-+-.-+|-..+
T Consensus 190 a~~i~~~a~qr~a~ 203 (520)
T PRK12704 190 AKEILAQAIQRCAA 203 (520)
T ss_pred HHHHHHHHHHhhcc
Confidence 35667788887765
No 213
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.27 E-value=2e+02 Score=36.43 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 042277 123 NCLLNLRAEYI 133 (899)
Q Consensus 123 ~cl~aL~~~~~ 133 (899)
.|++.+++|+-
T Consensus 389 Av~ycf~s~l~ 399 (970)
T KOG0946|consen 389 AVLYCFRSYLY 399 (970)
T ss_pred HHHHHHHHHHh
Confidence 34555555544
No 214
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=77.98 E-value=0.75 Score=57.73 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=23.8
Q ss_pred hchHHHHHHHHc--CCCeeEeeccccCCcccceee
Q 042277 564 SDTQPLIRSVLD--GYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 564 ~~v~pLV~svLd--GyN~cIfAYGQTGSGKTyTM~ 596 (899)
..+..++..++. |-+.|||.||++|+|||.|+-
T Consensus 765 eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 765 KEVHGFLESGIKQSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHH
Confidence 334455566664 445678999999999998873
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=77.73 E-value=1.3 Score=41.54 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=18.0
Q ss_pred HHHHcCCCeeEeeccccCCccccee
Q 042277 571 RSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 571 ~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+.......++.+|++|+|||+++
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334556889999999999766
No 216
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=77.60 E-value=1.6e+02 Score=35.02 Aligned_cols=6 Identities=17% Similarity=0.318 Sum_probs=3.6
Q ss_pred CCEEEE
Q 042277 500 GNIRVY 505 (899)
Q Consensus 500 GnIrV~ 505 (899)
.||+|+
T Consensus 394 ~~i~vi 399 (498)
T TIGR03007 394 VSFRII 399 (498)
T ss_pred ceEEEe
Confidence 466665
No 217
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.45 E-value=0.8 Score=42.48 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.1
Q ss_pred EeeccccCCcccceeec
Q 042277 581 IFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 581 IfAYGQTGSGKTyTM~G 597 (899)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56899999999999976
No 218
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.43 E-value=1e+02 Score=32.64 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhhHHHhhh---cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 042277 317 IVMNQLQQIKTEKSKLEEKKK---LEDDDVAKLMKEKDQQMLENLALKQELEMAKKTY 371 (899)
Q Consensus 317 ~~~~~l~~~~~e~~k~ee~~~---~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~ 371 (899)
+..+.|+-++.-|..+.+-++ ..+..+..+..+......-+..+.++...+++..
T Consensus 21 IT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 21 ITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344455555544444333332 1223444444444444444444444444444433
No 219
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.39 E-value=1.7e+02 Score=35.90 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYELRC 375 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~ 375 (899)
+....+....+|....+..|..+++.++++|...-
T Consensus 306 ~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~ 340 (560)
T PF06160_consen 306 KNLKELYEYLEHAKEQNKELKEELERVSQSYTLNH 340 (560)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45566667777888888888888888888775543
No 220
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.22 E-value=21 Score=38.03 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042277 356 ENLALKQELEMAKKTYE 372 (899)
Q Consensus 356 e~~~LkqeL~~~k~~~e 372 (899)
++.+++++|..++..+.
T Consensus 101 el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 101 QVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 34445555544444333
No 221
>PLN02939 transferase, transferring glycosyl groups
Probab=77.21 E-value=45 Score=43.01 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEM 366 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~ 366 (899)
|+.++..|||.+..++..|.-.|.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 157 DLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 4555666666666666666555554
No 222
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.18 E-value=1.3e+02 Score=33.88 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHh
Q 042277 388 GFEERIKELEHLLQVSRNKVRELE 411 (899)
Q Consensus 388 ~le~~i~ele~~l~~~~~~~~~le 411 (899)
.|++|++.||.+-..++.+...+.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 488888888888888888877664
No 223
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=77.00 E-value=93 Score=31.93 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=45.5
Q ss_pred hhhhhHhhhhhhhhhhHHhhhhHHHHHHHhhcCCchhhHHHHHHHHHHHhh----hhhHHHhhhcchHHHHHHHHHHHHh
Q 042277 278 TQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMNQLQQIKTE----KSKLEEKKKLEDDDVAKLMKEKDQQ 353 (899)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~~~e----~~k~ee~~~~~~~~~~~l~~eke~~ 353 (899)
++.+-++-.+...+..-.+.+.+++-.|.+..|... -..++++.| ..+++|. ++++.++..-.-..
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~------iDFeqLkien~~l~~kIeER----n~eL~~Lk~~~~~~ 75 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL------IDFEQLKIENQQLNEKIEER----NKELLKLKKKIGKT 75 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 455556666777777777777888888888777652 122222221 2334433 35555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 042277 354 MLENLALKQELEMAK 368 (899)
Q Consensus 354 ~~e~~~LkqeL~~~k 368 (899)
...++..++.|..+.
T Consensus 76 v~~L~h~keKl~~~~ 90 (177)
T PF13870_consen 76 VQILTHVKEKLHFLS 90 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554433
No 224
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=76.99 E-value=1.1e+02 Score=32.64 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=7.8
Q ss_pred HhHHHHHHHHHHHHHHH
Q 042277 352 QQMLENLALKQELEMAK 368 (899)
Q Consensus 352 ~~~~e~~~LkqeL~~~k 368 (899)
++..||..||..|..++
T Consensus 28 ~K~~Eiv~Lr~ql~e~~ 44 (202)
T PF06818_consen 28 QKDSEIVSLRAQLRELR 44 (202)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 34444445554444443
No 225
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=76.96 E-value=1.2 Score=44.34 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=19.9
Q ss_pred HHHHHHcC-CCeeEeeccccCCcccceeec
Q 042277 569 LIRSVLDG-YNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 569 LV~svLdG-yN~cIfAYGQTGSGKTyTM~G 597 (899)
+++.+-.+ ...-++..++||||||++|..
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 33443333 355566778999999999975
No 226
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.57 E-value=1.4e+02 Score=33.82 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=21.2
Q ss_pred ccHHHHHHHhhhccccccCCCCchHHHHHHHHHHHHHHHHhh
Q 042277 236 QSLLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRIS 277 (899)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 277 (899)
-||...|.+.. -.||+. .|..-+.+|+-++|+
T Consensus 49 ~sl~~~v~A~~--------~~iP~L--ElY~~sC~EL~~~I~ 80 (312)
T smart00787 49 CSLDQYVVAGY--------CTVPLL--ELYQFSCKELKKYIS 80 (312)
T ss_pred CCHHHHHHHhc--------CCCcHH--HHHHHHHHHHHHHHH
Confidence 46777776632 348985 666777777777765
No 227
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.51 E-value=1.3e+02 Score=33.28 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchh----hHHHhhhhHHHHHHHH
Q 042277 357 NLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDS----KYQRWSRKESIYQSFM 432 (899)
Q Consensus 357 ~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~----~~~~~~~~~~~~~~~~ 432 (899)
+..++.+|.+.+.+.+.++.. |+.+..+|+..+.....++..|..|-+. |+-.|-....+++..-
T Consensus 65 l~~ak~eLqe~eek~e~~l~~-----------Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk 133 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSK-----------LQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLK 133 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 455555555555554444444 4445555666666666666666555542 4445555666777777
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 042277 433 DLQHGALRELRFSSDSIKQEIS 454 (899)
Q Consensus 433 ~~~~~~l~~l~~~~~~~k~~~~ 454 (899)
+.|+..+.+|......++..+.
T Consensus 134 ~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 134 DSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888877765554444443
No 228
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=76.51 E-value=1e+02 Score=33.48 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=8.8
Q ss_pred hhhhhhcCCCEEEE
Q 042277 492 FNEVQDLKGNIRVY 505 (899)
Q Consensus 492 ~N~iqelkGnIrV~ 505 (899)
|..-.+.-+.|-||
T Consensus 158 ~~~E~~yg~~i~~~ 171 (251)
T PF11932_consen 158 YQIEMEYGRTIEVY 171 (251)
T ss_pred HHHHHHhCCceeEE
Confidence 44455666777777
No 229
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=76.42 E-value=1.1e+02 Score=32.44 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGF 389 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~l 389 (899)
|-..|+.+.++.+..+..|.+.+..-++.++.+-.....++.+.+.+|
T Consensus 6 eY~~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~El 53 (196)
T PF15272_consen 6 EYLELLDQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQEL 53 (196)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHH
Confidence 344455555556666666666665555555555555555555555444
No 230
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=76.26 E-value=0.74 Score=43.64 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=13.0
Q ss_pred CeeEeeccccCCccccee
Q 042277 578 NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM 595 (899)
+.+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999876
No 231
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=76.18 E-value=1.2e+02 Score=32.80 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=12.3
Q ss_pred CCccHHHHHHHhhhcccccc
Q 042277 234 PTQSLLSVVNGILDESVDRK 253 (899)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~ 253 (899)
++..+..+|++-+.+-+|+.
T Consensus 3 i~~r~~~~~~a~~~~~~dk~ 22 (225)
T COG1842 3 IFSRLKDLVKANINELLDKA 22 (225)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 34556667777776666654
No 232
>PF13245 AAA_19: Part of AAA domain
Probab=75.67 E-value=1.2 Score=39.56 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=18.6
Q ss_pred HHHHHcCCCeeEeeccccCCcccceeec
Q 042277 570 IRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 570 V~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
|..++. -+..+...|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 455556 333344599999999999853
No 233
>PRK00106 hypothetical protein; Provisional
Probab=75.66 E-value=1.6e+02 Score=35.82 Aligned_cols=143 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhh
Q 042277 346 LMKEKDQQMLENLALKQELEMAKKTYELRC-LHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRK 424 (899)
Q Consensus 346 l~~eke~~~~e~~~LkqeL~~~k~~~e~~~-~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~ 424 (899)
|+.-.++...-+...+.+-+...+..+.+. ........+++.++.++.++++..+.+-++++...|.....+...+..+
T Consensus 37 ~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekR 116 (535)
T PRK00106 37 LLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRK 116 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhh
Q 042277 425 ESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQD 497 (899)
Q Consensus 425 ~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqe 497 (899)
+..+...-.. |...+..+...++++.+.+..+.+........|...+.... .+.+..|.+++.+
T Consensus 117 ee~LekrE~e----Le~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~-----~eak~~l~~~~~~ 180 (535)
T PRK00106 117 DENLSSKEKT----LESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQ-----AEAREIILAETEN 180 (535)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHH
No 234
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.65 E-value=1.4e+02 Score=33.23 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=24.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 042277 420 RWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHAD 462 (899)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~ 462 (899)
.+...+..+..........+..++..+..++.++......|.+
T Consensus 245 ~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 245 QLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555666666666666666666666654
No 235
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=75.62 E-value=2.8 Score=45.46 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCCceeeEEEEEecCCCCCc
Q 042277 686 VTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERV 751 (899)
Q Consensus 686 V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~ 751 (899)
+.+++++...+..+... ..++ ...-|.-++.|.|.+.+. -.|+||||+|-.+.
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 45788888888766432 2111 123466788899987654 45999999998643
No 236
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=75.45 E-value=2.2e+02 Score=35.98 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHhhHH-H----------HHH
Q 042277 339 EDDDVAKLMKEKDQQ------------------------MLENLALKQELEMAKKTYELRCLHME-T----------EYK 383 (899)
Q Consensus 339 ~~~~~~~l~~eke~~------------------------~~e~~~LkqeL~~~k~~~e~~~~~le-~----------~~~ 383 (899)
++-|+.+|..|.|+- ..|++.|+..|..+.+.+.++..... + -++
T Consensus 354 ~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLq 433 (861)
T PF15254_consen 354 EDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQ 433 (861)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHH
Confidence 456788888888743 44778888888777776655433211 0 011
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 384 GAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 384 ~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
-...-|+.+++|..+.++.+..+..++..
T Consensus 434 SlN~~Lq~ql~es~k~~e~lq~kneellk 462 (861)
T PF15254_consen 434 SLNMSLQNQLQESLKSQELLQSKNEELLK 462 (861)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHH
Confidence 22223555555555555555555555433
No 237
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=75.16 E-value=1.3 Score=53.84 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..+..++..-++.|+..|+||||||+||..
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 355677777789999999999999999854
No 238
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=75.15 E-value=2.2e+02 Score=35.36 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhc
Q 042277 466 CLGVRLKALAGAAENYHAVLAENRRLFNEVQDL 498 (899)
Q Consensus 466 ~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqel 498 (899)
.++...+.|..+.+.......+|..|-.++-.+
T Consensus 280 ~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~ 312 (617)
T PF15070_consen 280 QLEMAHQELQEAQEHLEALSQQNQQLQAQLSLM 312 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 456677788888777777777787777766544
No 239
>PRK10436 hypothetical protein; Provisional
Probab=74.97 E-value=1.4 Score=52.28 Aligned_cols=30 Identities=37% Similarity=0.427 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..+..++..-++.|+..|+||||||.||..
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 345566777788999999999999999953
No 240
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.92 E-value=59 Score=39.58 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=19.5
Q ss_pred hHHHHHhchhhHHHHHHhhhhcCC
Q 042277 51 DEELRACLIDGTVLCQILKRLKPA 74 (899)
Q Consensus 51 ~e~f~~~LkdG~iLC~l~N~l~PG 74 (899)
-++.-+...|+-=|..++..|.||
T Consensus 56 vDnvyEL~~~~~~li~il~~lP~~ 79 (652)
T COG2433 56 VDNVYELGADKRDLIRILKRLPEG 79 (652)
T ss_pred eccHHHHhcChhHHHHHHHhCCCC
Confidence 356788888999899999998665
No 241
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=74.83 E-value=0.96 Score=57.53 Aligned_cols=60 Identities=32% Similarity=0.349 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 353 QMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 353 ~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
....++.+..+|..++.+++.........+.+++..|..++.+++..++..+..+..++.
T Consensus 290 l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK 349 (859)
T PF01576_consen 290 LERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEK 349 (859)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777788888888888777766677777888888888877777777766665544
No 242
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=74.65 E-value=1.5 Score=52.32 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=24.8
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..+..++..-++.|+-.|+||||||+||..
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 455667777778899999999999999964
No 243
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=74.55 E-value=45 Score=36.89 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=10.4
Q ss_pred HHhHHHHHHHHHHHHHH
Q 042277 351 DQQMLENLALKQELEMA 367 (899)
Q Consensus 351 e~~~~e~~~LkqeL~~~ 367 (899)
++++.-+..||..|.+.
T Consensus 64 QQKEV~iRHLkakLkes 80 (305)
T PF15290_consen 64 QQKEVCIRHLKAKLKES 80 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666777666433
No 244
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=74.44 E-value=95 Score=35.60 Aligned_cols=7 Identities=29% Similarity=0.107 Sum_probs=3.6
Q ss_pred cCCCeeE
Q 042277 575 DGYNVCI 581 (899)
Q Consensus 575 dGyN~cI 581 (899)
.|-.+.|
T Consensus 326 ~G~~v~v 332 (423)
T TIGR01843 326 VGQPAEI 332 (423)
T ss_pred CCCceEE
Confidence 4555554
No 245
>PRK11281 hypothetical protein; Provisional
Probab=73.87 E-value=3.1e+02 Score=36.49 Aligned_cols=12 Identities=17% Similarity=0.171 Sum_probs=5.9
Q ss_pred HHHHHHHcCCCe
Q 042277 568 PLIRSVLDGYNV 579 (899)
Q Consensus 568 pLV~svLdGyN~ 579 (899)
.+++.+..++|.
T Consensus 414 ~LL~~l~~~~~~ 425 (1113)
T PRK11281 414 ELLDQLNKQLNN 425 (1113)
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 246
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.87 E-value=2.5e+02 Score=35.42 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=14.7
Q ss_pred CchHHHHHHHHHHHHHHH
Q 042277 257 IPHRVACLLRKVVQEIER 274 (899)
Q Consensus 257 ~~~~~~~~~~~~~~~~e~ 274 (899)
=|...+.++..+++.|-.
T Consensus 165 dP~~Aa~iaN~la~~Y~~ 182 (754)
T TIGR01005 165 DPKLAAAIPDAIAAAYIA 182 (754)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 388889999999988753
No 247
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=73.75 E-value=1.4 Score=49.01 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=26.6
Q ss_pred EeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 548 KFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 548 ~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
+||.+.+ |+++.+.+..++. .|....++-||++|+|||++..
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 4666664 4445444433332 3443357889999999999874
No 248
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=73.54 E-value=1.7 Score=42.89 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.++..+.+|.| ++..|+||||||+....
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 35566677777 77899999999998765
No 249
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=73.53 E-value=1.6 Score=49.63 Aligned_cols=30 Identities=33% Similarity=0.555 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
|.+..++.--.+.|+-.|+||||||+||..
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 445555544457799999999999999953
No 250
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=73.36 E-value=1.3e+02 Score=31.85 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 042277 392 RIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 392 ~i~ele~~l~~~~~~~~~l 410 (899)
++.+|+..+....+.++-+
T Consensus 110 ~~~eLeEe~~~~~~nlk~l 128 (205)
T KOG1003|consen 110 QSEELEEDLRILDSNLKSL 128 (205)
T ss_pred HHHHHHHHHHHhHhHHHHH
Confidence 3333444333333333333
No 251
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.20 E-value=1.6e+02 Score=32.73 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 451 QEISKAQKSHADDLYCLGVRLKALA 475 (899)
Q Consensus 451 ~~~~~~q~~~~~~~~~l~~~l~~l~ 475 (899)
+.+...+.++...++.|.....++-
T Consensus 172 e~l~al~~e~e~~~~~L~~qk~e~~ 196 (265)
T COG3883 172 ETLVALQNELETQLNSLNSQKAEKN 196 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566665555555444443
No 252
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=72.88 E-value=1.7e+02 Score=32.94 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEM 366 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~ 366 (899)
+++..+.......+..+..|..+...
T Consensus 69 eev~elK~kR~ein~kl~eL~~~~~~ 94 (294)
T COG1340 69 EEVQELKEKRDEINAKLQELRKEYRE 94 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 253
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=72.64 E-value=16 Score=45.01 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
.++..+..++...++-||++|+|||+..
T Consensus 165 ~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 165 ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 3455566678878888999999999865
No 254
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=72.57 E-value=1.2 Score=46.34 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.5
Q ss_pred CeeEeeccccCCcccceee
Q 042277 578 NVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~ 596 (899)
++.|+-.|+||||||+|+.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578899999999999984
No 255
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=72.55 E-value=2.3e+02 Score=34.35 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=16.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 042277 350 KDQQMLENLALKQELEMAKKTYEL 373 (899)
Q Consensus 350 ke~~~~e~~~LkqeL~~~k~~~e~ 373 (899)
.++....+.+|+.+.+..+++|-.
T Consensus 318 l~k~ke~n~~L~~Eie~V~~sY~l 341 (570)
T COG4477 318 LEKAKENNEHLKEEIERVKESYRL 341 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556667777777777777754
No 256
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=72.52 E-value=1.2 Score=41.04 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.2
Q ss_pred eeEeeccccCCcccceeec
Q 042277 579 VCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM~G 597 (899)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999999854
No 257
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=72.48 E-value=1.2 Score=47.07 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHH
Q 042277 767 INKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESL 826 (899)
Q Consensus 767 INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETl 826 (899)
......++-+.+..|.......+--...+...|-++++.+.+ +.|+.+|--+......+
T Consensus 163 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-i~IiDLs~~~~~~~~~i 221 (229)
T PF01935_consen 163 ASSTIRALLRRLERLFRRGSFFSSTPEDIIKLLLDYLNKPGK-IVIIDLSGVDEEVQDII 221 (229)
T ss_pred hHHHHHHHHHHHHHHHhcccccccCcccHHHHhhhhcCCCCC-EEEEECCCCCHHHHHHH
Confidence 344455555666666544443333344556666666655554 45557776544444443
No 258
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.46 E-value=1.8e+02 Score=33.00 Aligned_cols=32 Identities=6% Similarity=0.165 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 042277 423 RKESIYQSFMDLQHGALRELRFSSDSIKQEIS 454 (899)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~ 454 (899)
..++....+++-..++..+|......++..+.
T Consensus 171 ~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 171 TLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444445556666666666655555555443
No 259
>PF12846 AAA_10: AAA-like domain
Probab=72.41 E-value=1.2 Score=48.00 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=16.8
Q ss_pred CeeEeeccccCCcccceeec
Q 042277 578 NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~G 597 (899)
|..++..|.||||||++|..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~ 20 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN 20 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 55678999999999999853
No 260
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=72.15 E-value=36 Score=37.36 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=13.3
Q ss_pred CeeEeeccccCCcccc
Q 042277 578 NVCIFAYGQTGSGKTY 593 (899)
Q Consensus 578 N~cIfAYGQTGSGKTy 593 (899)
.--++-||+.|+|||.
T Consensus 181 PKGvlLygppgtGktL 196 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTL 196 (404)
T ss_pred CcceEEecCCCCchhH
Confidence 3458899999999984
No 261
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=72.14 E-value=2.4e+02 Score=34.43 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=13.1
Q ss_pred CccchhHHHHHHHHHhh
Q 042277 604 EDWGVNYRALNDLFNLS 620 (899)
Q Consensus 604 ~~~GIipRal~~LF~~~ 620 (899)
++.|++-+++..||..+
T Consensus 491 ~~~g~~~~~~s~~~S~l 507 (582)
T PF09731_consen 491 EGAGLLGHLLSYLFSLL 507 (582)
T ss_pred CCCCHHHHHHHHHHhee
Confidence 35588889999998754
No 262
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=72.06 E-value=5 Score=40.84 Aligned_cols=91 Identities=29% Similarity=0.452 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcc-hhhhhHHHH-HHHHhhcCCCccc
Q 042277 32 LIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSM-SRSGKIARF-LTTLGKLGISRFE 109 (899)
Q Consensus 32 ~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~-~~~ENI~~F-L~a~~~~Gvp~F~ 109 (899)
+..||.. ++- ..+...++..+.||.++++++.+..|..|.--+..+..+. ..+.|-..| .+....+|++ |.
T Consensus 1 l~~WL~~-l~l-----s~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~-l~ 73 (158)
T PF06294_consen 1 LLKWLQS-LDL-----SRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLKKLGIK-LD 73 (158)
T ss_dssp HHHHHHH-S-------S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTGGGT-----
T ss_pred ChHHHhc-CCC-----CCCCCchHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHcCCC-CC
Confidence 3579998 332 1234578888999999999999999999988877775544 457999999 8999999985 55
Q ss_pred ccccc---cCC---cchHHHHHHHHH
Q 042277 110 MSDLE---KGS---MKPVINCLLNLR 129 (899)
Q Consensus 110 ~~DL~---eg~---~~~Vv~cl~aL~ 129 (899)
..|++ .|+ ...++.+|+..-
T Consensus 74 ~~~i~~i~~~~~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 74 KEDIEGIINCKPGAAESLLYQLYTKL 99 (158)
T ss_dssp HHHHHHHHTT-TTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 55443 444 445555554443
No 263
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=71.83 E-value=1.7e+02 Score=33.97 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 042277 352 QQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 352 ~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~l 410 (899)
-...|+.+|||||..+..+. . =.-.+|.++++..+|.+.+.+..+
T Consensus 321 LqQnEi~nLKqElasmeerv-----------a---YQsyERaRdIqEalEscqtrisKl 365 (455)
T KOG3850|consen 321 LQQNEIANLKQELASMEERV-----------A---YQSYERARDIQEALESCQTRISKL 365 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888875332211 0 012356667777777777776655
No 264
>PRK06921 hypothetical protein; Provisional
Probab=71.63 E-value=2.4 Score=46.59 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=24.9
Q ss_pred hHHhchHHHHHHHHc---CCCeeEeeccccCCcccceeec
Q 042277 561 EVFSDTQPLIRSVLD---GYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 561 eVF~~v~pLV~svLd---GyN~cIfAYGQTGSGKTyTM~G 597 (899)
.++..+...+..+-+ +..-.|+-||++|+||||.+..
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 344444556655432 2345688999999999999865
No 265
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=71.58 E-value=2 Score=49.56 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
++++.++. .++.|+..|+||||||+||.
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 34444443 45678889999999999984
No 266
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=71.51 E-value=2.1 Score=50.48 Aligned_cols=52 Identities=23% Similarity=0.370 Sum_probs=34.9
Q ss_pred ceeEEeceeeCCCCChhhHHhchHHHHHHH--HcC--CCeeEeeccccCCcccceeec
Q 042277 544 QRMFKFNKVFGPDATQAEVFSDTQPLIRSV--LDG--YNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 544 ~k~F~FD~VF~~~atQeeVF~~v~pLV~sv--LdG--yN~cIfAYGQTGSGKTyTM~G 597 (899)
...|+||.-+.. .++...|..+..+.... ..| ||. +|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 456999987753 35555666655554432 223 454 67899999999999864
No 267
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=71.29 E-value=2e+02 Score=35.90 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=20.8
Q ss_pred HHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 042277 439 LRELRFSSDSIKQEISKAQK---SHADDLYCLGVRLKALA 475 (899)
Q Consensus 439 l~~l~~~~~~~k~~~~~~q~---~~~~~~~~l~~~l~~l~ 475 (899)
...|...++++|+.+.+++. ....+.++|...++.|-
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45566667777777765543 44444455554444443
No 268
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=71.05 E-value=80 Score=28.47 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 343 VAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 343 ~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
+..|..+.+.....+..++..+..+++.|...+...... .+.+.+++.-..++.......+..++.++.
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~ 70 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD-SELKRELDELTDEIKQLFQKIKKRLKQLSK 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888899999999999999988877765532 345555555555566666666666655544
No 269
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=70.85 E-value=2.5e+02 Score=34.09 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhHH
Q 042277 393 IKELEHLLQVSRNKV 407 (899)
Q Consensus 393 i~ele~~l~~~~~~~ 407 (899)
+..|+..+...+.++
T Consensus 339 v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 339 VSSLEAELNKTRSEL 353 (522)
T ss_pred HhhHHHHHHHHHHHH
Confidence 333444444444444
No 270
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.64 E-value=9.6 Score=42.53 Aligned_cols=101 Identities=19% Similarity=0.352 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc--ccccccCCCcchhhhhHHHHHHHHhhcCC
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASV--DEANYSYNSSMSRSGKIARFLTTLGKLGI 105 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~~~~~~~~~~~ENI~~FL~a~~~~Gv 105 (899)
=|.|++.|+..++... +. --+-|..|-.-|.++.-|.||.| +||.-.......+.-|-..+-.+-.++||
T Consensus 16 sR~E~laW~N~~l~~n-~~-------kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f~klgi 87 (295)
T KOG3000|consen 16 SRLEILAWINDLLQLN-LT-------KIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCFNKLGI 87 (295)
T ss_pred chHHHHHHHHhhhhcc-hh-------hhhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHHHHHhcCC
Confidence 3779999999998742 11 12337899999999999999987 56653333344666888888888899999
Q ss_pred Cc-ccccccccCCcchHHHHHHHHHHHHHhcC
Q 042277 106 SR-FEMSDLEKGSMKPVINCLLNLRAEYITGG 136 (899)
Q Consensus 106 p~-F~~~DL~eg~~~~Vv~cl~aL~~~~~~~g 136 (899)
.. -...+|-.|.+---..-+.=+|.++....
T Consensus 88 ~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~ 119 (295)
T KOG3000|consen 88 DKVVDVDKLVKGPFQDNLEFLQWFKKFFDANY 119 (295)
T ss_pred cccccHHHHhcccccchHHHHHHHHHHhhccC
Confidence 86 66667788876666667777888888653
No 271
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=70.34 E-value=2.1 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=19.3
Q ss_pred HcCCCeeEeeccccCCcccceeec
Q 042277 574 LDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 574 LdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
+.--.+.|+-.|+||||||.||..
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHHH
Confidence 333468899999999999999843
No 272
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=69.95 E-value=2.3e+02 Score=33.25 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHH
Q 042277 354 MLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFE 390 (899)
Q Consensus 354 ~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le 390 (899)
..|+.-|+..|..+++.|.+++.+.-.+..+.+.+++
T Consensus 259 ~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~ 295 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENE 295 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5566777777777777777777766555555444443
No 273
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.78 E-value=1e+02 Score=32.92 Aligned_cols=6 Identities=17% Similarity=0.590 Sum_probs=2.3
Q ss_pred HHHHHH
Q 042277 360 LKQELE 365 (899)
Q Consensus 360 LkqeL~ 365 (899)
+++++.
T Consensus 98 le~el~ 103 (206)
T PRK10884 98 LENQVK 103 (206)
T ss_pred HHHHHH
Confidence 333333
No 274
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=69.77 E-value=1.2e+02 Score=31.76 Aligned_cols=125 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHhhhccccccCCCCchHHHHHHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHhhhhHHHHHHHhhcCCchhhHHHHH
Q 042277 241 VVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMN 320 (899)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 320 (899)
+.+.+++|.|-.---++|-+ --||.+|-.|+ ..+|.+-..-|.|.+ ....+.
T Consensus 63 ly~~~F~ELIRQVTi~C~ER-GlLL~rvrde~--------------~~~l~~y~~l~~s~~-------------~f~~rk 114 (189)
T PF10211_consen 63 LYSQCFDELIRQVTIDCPER-GLLLLRVRDEY--------------RMTLDAYQTLYESSI-------------AFGMRK 114 (189)
T ss_pred HHHHHHHHHHHHHHhCcHHH-hHHHHHHHHHH--------------HHHHHHHHHHHHHHH-------------HHHHHH
Q ss_pred HHHHHHhhhhhHHHhhhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHH
Q 042277 321 QLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLL 400 (899)
Q Consensus 321 ~l~~~~~e~~k~ee~~~~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l 400 (899)
.++... .+.-.++++..|..+++.+..++..++...+.+.+..+......+...++....|....+.|+..+
T Consensus 115 ~l~~e~--------~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 115 ALQAEQ--------GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 042277 401 Q 401 (899)
Q Consensus 401 ~ 401 (899)
+
T Consensus 187 ~ 187 (189)
T PF10211_consen 187 E 187 (189)
T ss_pred h
No 275
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.52 E-value=2.3e+02 Score=33.12 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=12.7
Q ss_pred CchHHHHHHHHHHHHHH
Q 042277 257 IPHRVACLLRKVVQEIE 273 (899)
Q Consensus 257 ~~~~~~~~~~~~~~~~e 273 (899)
=|...+.++..++++|-
T Consensus 142 dp~~A~~i~n~~~~~y~ 158 (444)
T TIGR03017 142 DPRFAATVANAFAQAYI 158 (444)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 37788888888887653
No 276
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.49 E-value=2.7e+02 Score=33.87 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHH
Q 042277 359 ALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLL 400 (899)
Q Consensus 359 ~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l 400 (899)
+|-++=..-...|-.++.+|++++++.+.+|.....+.+...
T Consensus 93 sLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~ 134 (772)
T KOG0999|consen 93 SLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLE 134 (772)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455777888999999999988888777776643
No 277
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=69.08 E-value=2.3 Score=44.42 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=22.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..|..++...+-.++..|+.||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 45677776655556669999999999883
No 278
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=68.94 E-value=2.5 Score=46.37 Aligned_cols=29 Identities=38% Similarity=0.517 Sum_probs=23.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..+..++..-.+.|+-.|+||||||+||.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 44566666566778899999999999985
No 279
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=68.52 E-value=2 Score=46.71 Aligned_cols=19 Identities=42% Similarity=0.510 Sum_probs=16.1
Q ss_pred CeeEeeccccCCcccceee
Q 042277 578 NVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~ 596 (899)
.+.|+-.|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5667788999999999984
No 280
>PF15294 Leu_zip: Leucine zipper
Probab=68.38 E-value=58 Score=36.20 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=18.9
Q ss_pred hhhHHHHHHHhhcCCchhhHHHHHHHHHHHh
Q 042277 297 YQSRIRVLEALASGTGEETEIVMNQLQQIKT 327 (899)
Q Consensus 297 ~~~~~~~~e~~~~~~~~~~~~~~~~l~~~~~ 327 (899)
.+.|+.-+|..|...-+|...+..+|.++..
T Consensus 144 Lk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 144 LKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666655553
No 281
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.38 E-value=62 Score=36.59 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=4.8
Q ss_pred CcccceeecC
Q 042277 589 SGKTYTMSGP 598 (899)
Q Consensus 589 SGKTyTM~G~ 598 (899)
.+.+|.++|+
T Consensus 215 ~~~~~~ly~~ 224 (314)
T PF04111_consen 215 DKTTYPLYSS 224 (314)
T ss_dssp TCEEEESS--
T ss_pred CCeEEecccC
Confidence 4566666664
No 282
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.97 E-value=3.2 Score=45.63 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=27.2
Q ss_pred Hhch--HHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 563 FSDT--QPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 563 F~~v--~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
|++. .|.+..+.--.-+.|+..|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4443 567777777778889999999999999984
No 283
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=67.70 E-value=1.1e+02 Score=28.63 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 042277 343 VAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 343 ~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~l 410 (899)
+..|..+.+.....+..+...+..+++.|+.-..... .....+..+...+.+........+..++.+
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l 69 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPD-ADKELREKLERLIDDIKRLAKEIRAKLKEL 69 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777666543322 112233344444444444444444444444
No 284
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=67.59 E-value=1.9 Score=44.53 Aligned_cols=30 Identities=33% Similarity=0.468 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..+...+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 444444445678899999999999998763
No 285
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.09 E-value=61 Score=36.65 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042277 340 DDDVAKLMKEKDQQMLENLALKQELEMAK 368 (899)
Q Consensus 340 ~~~~~~l~~eke~~~~e~~~LkqeL~~~k 368 (899)
.+++..+.++.++...++.+|+.++..++
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554444
No 286
>PF15294 Leu_zip: Leucine zipper
Probab=67.08 E-value=2.1e+02 Score=31.89 Aligned_cols=46 Identities=37% Similarity=0.373 Sum_probs=23.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHH
Q 042277 345 KLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEH 398 (899)
Q Consensus 345 ~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~ 398 (899)
.+.++...+..|+..|+..|....+. -+.+.+.+..++.++.++..
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~--------at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQ--------ATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666555433322 23334445556666666666
No 287
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=66.81 E-value=3.7e+02 Score=34.50 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=7.4
Q ss_pred CCCchHHHHHHHHHH
Q 042277 255 GEIPHRVACLLRKVV 269 (899)
Q Consensus 255 ~~~~~~~~~~~~~~~ 269 (899)
.+-|+.++.+.+.|-
T Consensus 329 d~~~~~~~~~~~e~~ 343 (980)
T KOG0980|consen 329 DPRELQIEQLSREVA 343 (980)
T ss_pred ChhhHHHHHHHHHHH
Confidence 444555555544443
No 288
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=66.74 E-value=74 Score=31.19 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEM 366 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~ 366 (899)
++.++..-+.+...++...|.+++-
T Consensus 24 ~Fsrl~~R~~~lk~dik~~k~~~en 48 (131)
T KOG1760|consen 24 EFSRLNSRKDDLKADIKEAKTEIEN 48 (131)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3555555555566666666655543
No 289
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=66.58 E-value=1.4 Score=44.10 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..++.....|...+++-+|.+|+|||+.+
T Consensus 13 ~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 13 RDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 33343233566778999999999999875
No 290
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=66.32 E-value=2.8e+02 Score=32.93 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=15.0
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 042277 347 MKEKDQQMLENLALKQELE 365 (899)
Q Consensus 347 ~~eke~~~~e~~~LkqeL~ 365 (899)
+.|+|-+..||..||.+|.
T Consensus 221 ~~EkE~Ll~EIq~Lk~qL~ 239 (488)
T PF06548_consen 221 MGEKEVLLEEIQDLKSQLQ 239 (488)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 6677788888888888886
No 291
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=66.30 E-value=2e+02 Score=31.12 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhh
Q 042277 392 RIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 392 ~i~ele~~l~~~~~~~~~le~ 412 (899)
.+...+..++....++.+++.
T Consensus 128 ~Le~aEeR~e~~E~ki~eLE~ 148 (237)
T PF00261_consen 128 ELERAEERAEAAESKIKELEE 148 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhchhHHHHHH
Confidence 333333344444444444433
No 292
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=66.19 E-value=3.1 Score=46.94 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..++..++.+. ..|+-.|.||||||++|.
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 35566666653 556666999999997774
No 293
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.14 E-value=2e+02 Score=31.29 Aligned_cols=9 Identities=11% Similarity=0.409 Sum_probs=3.2
Q ss_pred HHHHHHhHH
Q 042277 399 LLQVSRNKV 407 (899)
Q Consensus 399 ~l~~~~~~~ 407 (899)
.++..+..+
T Consensus 85 ~i~~~r~~l 93 (302)
T PF10186_consen 85 RIEQKRERL 93 (302)
T ss_pred HHHHHHHHH
Confidence 333333333
No 294
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=66.13 E-value=2.5e+02 Score=34.58 Aligned_cols=19 Identities=37% Similarity=0.274 Sum_probs=10.0
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 042277 346 LMKEKDQQMLENLALKQEL 364 (899)
Q Consensus 346 l~~eke~~~~e~~~LkqeL 364 (899)
|+.+|-++..|++.||=.+
T Consensus 172 LETqKlDLmaevSeLKLkl 190 (861)
T KOG1899|consen 172 LETQKLDLMAEVSELKLKL 190 (861)
T ss_pred HHHHHhHHHHHHHHhHHHH
Confidence 3444455555666665444
No 295
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=64.88 E-value=1.8e+02 Score=31.53 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMA 367 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~ 367 (899)
.+.++-.++.....++..|+.+++.+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555433
No 296
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=64.81 E-value=2 Score=44.94 Aligned_cols=17 Identities=47% Similarity=0.597 Sum_probs=15.0
Q ss_pred eEeeccccCCcccceee
Q 042277 580 CIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~ 596 (899)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 57789999999999984
No 297
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=64.53 E-value=3.4 Score=42.61 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.0
Q ss_pred eeEeeccccCCcccceeec
Q 042277 579 VCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM~G 597 (899)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4588899999999998865
No 298
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=64.49 E-value=1.6e+02 Score=29.51 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 042277 390 EERIKELEHLLQVSRNKVRE 409 (899)
Q Consensus 390 e~~i~ele~~l~~~~~~~~~ 409 (899)
..++..++..++.+..++..
T Consensus 41 ~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 41 QKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 299
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=64.26 E-value=4.3e+02 Score=35.19 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCCeeE
Q 042277 567 QPLIRSVLDGYNVCI 581 (899)
Q Consensus 567 ~pLV~svLdGyN~cI 581 (899)
+.+++.+++++|.-|
T Consensus 389 r~LL~~L~~~~~~~l 403 (1109)
T PRK10929 389 RELLNSLLSGGDTLI 403 (1109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777776644
No 300
>PRK12704 phosphodiesterase; Provisional
Probab=64.24 E-value=3.3e+02 Score=33.08 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=9.6
Q ss_pred ceeeCCCCChhhHHhchHHHH
Q 042277 550 NKVFGPDATQAEVFSDTQPLI 570 (899)
Q Consensus 550 D~VF~~~atQeeVF~~v~pLV 570 (899)
|....|. .-++++..+..-+
T Consensus 276 dg~i~P~-~iee~~~~~~~~~ 295 (520)
T PRK12704 276 DGRIHPA-RIEEMVEKARKEV 295 (520)
T ss_pred cCCcCCC-CHHHHHHHHHHHH
Confidence 4444444 3456665554333
No 301
>PF13479 AAA_24: AAA domain
Probab=64.24 E-value=2.8 Score=44.28 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=17.1
Q ss_pred CeeEeeccccCCcccceeec
Q 042277 578 NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~G 597 (899)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 46788999999999998765
No 302
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=64.24 E-value=4.3 Score=43.64 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=17.7
Q ss_pred HcCCCeeEeeccccCCcccceee
Q 042277 574 LDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 574 LdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
++.....++-+|++|+|||+++.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 44445578889999999998773
No 303
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.22 E-value=3.2e+02 Score=32.91 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=13.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 042277 438 ALRELRFSSDSIKQEISKAQKSHADDL 464 (899)
Q Consensus 438 ~l~~l~~~~~~~k~~~~~~q~~~~~~~ 464 (899)
.|+..+..-.++..++.++|-+|.+.+
T Consensus 262 ~Lq~~~da~~ql~aE~~EleDkyAE~m 288 (596)
T KOG4360|consen 262 HLQAYKDAQRQLTAELEELEDKYAECM 288 (596)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555543
No 304
>PLN02939 transferase, transferring glycosyl groups
Probab=63.80 E-value=4.5e+02 Score=34.44 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=12.9
Q ss_pred HHhhhhHHHHHHHhhcCC
Q 042277 294 EEKYQSRIRVLEALASGT 311 (899)
Q Consensus 294 ~~~~~~~~~~~e~~~~~~ 311 (899)
-|..|..|.+||.--+.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~ 182 (977)
T PLN02939 165 KEALQGKINILEMRLSET 182 (977)
T ss_pred HHHHHhhHHHHHHHhhhh
Confidence 355688899988765554
No 305
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=63.64 E-value=3.6 Score=45.98 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..++..++.+ ...|+-.|.||||||++|-
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 4556666654 4567899999999999874
No 306
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=63.57 E-value=2.6e+02 Score=31.53 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 042277 459 SHADDLYCLGVRLKALAGAAENYHAVLA 486 (899)
Q Consensus 459 ~~~~~~~~l~~~l~~l~~~~~~y~~~~~ 486 (899)
.|.+++..+-.....+-.-++.||....
T Consensus 190 e~he~m~k~~~~~De~Rkeade~he~~v 217 (294)
T COG1340 190 EYHEEMIKLFEEADELRKEADELHEEFV 217 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666677776653
No 307
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=63.28 E-value=4.2e+02 Score=33.88 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=19.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 381 EYKGAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 381 ~~~~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
+.+..+.+||.++.++...|..+..+...+-.
T Consensus 82 e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~ 113 (769)
T PF05911_consen 82 EWEKIKSELEAKLAELSKRLAESAAENSALSK 113 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455556777777777776666666554433
No 308
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=63.04 E-value=3.5e+02 Score=32.88 Aligned_cols=7 Identities=14% Similarity=0.316 Sum_probs=3.3
Q ss_pred hhHHhch
Q 042277 560 AEVFSDT 566 (899)
Q Consensus 560 eeVF~~v 566 (899)
++||+.+
T Consensus 279 ee~~~~~ 285 (514)
T TIGR03319 279 EEMVEKA 285 (514)
T ss_pred HHHHHHH
Confidence 4455443
No 309
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=62.97 E-value=4.9 Score=43.78 Aligned_cols=130 Identities=19% Similarity=0.327 Sum_probs=70.5
Q ss_pred EEeceeeCCCCChhhHHhchHHHHHHHHcCCCee-EeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCC
Q 042277 547 FKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVC-IFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRS 625 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~c-IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~ 625 (899)
..+|...+-+...+.+.+.+ ..++.|..+- ++-||..|+|||.++-. +-.-|. ..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlVka---------------ll~~y~---~~-- 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLVKA---------------LLNEYA---DQ-- 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHHHH---------------HHHHHh---hc--
Confidence 45666666555555554444 5567776443 66699999999877632 222221 11
Q ss_pred CeeEEEEEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEec-CCHHHHHHHHHHHHhccc
Q 042277 626 SIMYEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPV-TSTEDVLELMDIGLKNRA 704 (899)
Q Consensus 626 ~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V-~s~ee~~~lL~~g~~~R~ 704 (899)
+ +.++||..+.+.||-.--. .+. .....-=+++.+|+.-.- .+...+..+|+-|...|
T Consensus 80 G------LRlIev~k~~L~~l~~l~~-------~l~-------~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~- 138 (249)
T PF05673_consen 80 G------LRLIEVSKEDLGDLPELLD-------LLR-------DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR- 138 (249)
T ss_pred C------ceEEEECHHHhccHHHHHH-------HHh-------cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-
Confidence 1 6689999998887642100 000 000111245566653322 23566777777666554
Q ss_pred ccccCCCCCCCCceeEE
Q 042277 705 IGATALNERSSRSHSVV 721 (899)
Q Consensus 705 ~~sT~~N~~SSRSH~If 721 (899)
....-+...|.|-|.|=
T Consensus 139 P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 139 PDNVLIYATSNRRHLVP 155 (249)
T ss_pred CCcEEEEEecchhhccc
Confidence 33334455666666654
No 310
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=62.87 E-value=2.9 Score=39.23 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.0
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999765
No 311
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=62.58 E-value=27 Score=47.10 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCC
Q 042277 30 ALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGI 105 (899)
Q Consensus 30 ~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gv 105 (899)
.---.|+.+.++....- -.|+..-|+||+.|.+|+..|.--..||-+..- .--.|+||+..-|.+.++-.|
T Consensus 51 KTFTKWvNShL~rv~c~----I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGR-MRIH~LENvdKaLqFLkeqkV 121 (2473)
T KOG0517|consen 51 KTFTKWVNSHLARVSCR----IGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGR-MRIHCLENVDKALQFLKEQKV 121 (2473)
T ss_pred HhHHHHHHHHHHHhcch----hHHHHHHHhhhHHHHHHHHHHccccCCCCCCCc-eeehhHhhhHHHHHHHHhccc
Confidence 33457999999864332 368999999999999999999755666655222 112478999998888876333
No 312
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=62.26 E-value=4.3 Score=44.80 Aligned_cols=40 Identities=25% Similarity=0.210 Sum_probs=25.9
Q ss_pred CChhhHHhchHHHHHHHHcC--CCeeEeeccccCCcccceee
Q 042277 557 ATQAEVFSDTQPLIRSVLDG--YNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 557 atQeeVF~~v~pLV~svLdG--yN~cIfAYGQTGSGKTyTM~ 596 (899)
..|+++...+..++.....+ ....++-||++|+|||+...
T Consensus 7 iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 45666666665666544332 22236679999999998763
No 313
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.26 E-value=1.2e+02 Score=35.60 Aligned_cols=23 Identities=17% Similarity=0.409 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHh
Q 042277 389 FEERIKELEHLLQVSRNKVRELE 411 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~~le 411 (899)
.++|.+|+...++...+.+..+|
T Consensus 296 s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 296 SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555666666665555555543
No 314
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=61.87 E-value=3.6e+02 Score=32.72 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=3.4
Q ss_pred hhhhhhhc
Q 042277 491 LFNEVQDL 498 (899)
Q Consensus 491 l~N~iqel 498 (899)
+-.-||-.
T Consensus 188 ~~~aiqr~ 195 (514)
T TIGR03319 188 LATAIQRY 195 (514)
T ss_pred HHHHHHhc
Confidence 44444433
No 315
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=61.72 E-value=2.5e+02 Score=30.73 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=14.7
Q ss_pred CchHHHHHHHHHHHHHHHHhhhh
Q 042277 257 IPHRVACLLRKVVQEIERRISTQ 279 (899)
Q Consensus 257 ~~~~~~~~~~~~~~~~e~~~~~~ 279 (899)
-|+.+.+=+..+..++....+..
T Consensus 18 ~~~~l~~~~e~~~~~L~~~~~~~ 40 (264)
T PF06008_consen 18 APYKLLSSIEDLTNQLRSYRSKL 40 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc
Confidence 46766666666666666665544
No 316
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=61.41 E-value=4.3e+02 Score=33.44 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=38.0
Q ss_pred hhcCCCCCCCCccHHHHHHHhhhcccccc--CCCCchH-HHHHHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q 042277 225 MKSTSLDNAPTQSLLSVVNGILDESVDRK--NGEIPHR-VACLLRKVVQEIERRISTQADHLRTQNNLFKTR 293 (899)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 293 (899)
||-....-.|+--|-.=|-.+=.+...-| ..+.|+. ...++.|+.+||.++++.=.....-+..|-..|
T Consensus 421 ~~~~~~~~~~~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr 492 (762)
T PLN03229 421 MKKREAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLR 492 (762)
T ss_pred cchhccCCCCCccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44444444565555443333222222222 3355654 468889999999999997654444444444444
No 317
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=60.96 E-value=54 Score=41.48 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=11.6
Q ss_pred Chhhhhhcccccccccc
Q 042277 3 GPEELKRSNSAFESSVN 19 (899)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (899)
-||-|.|+++.|||-..
T Consensus 678 KPdfmRrpDr~fdPFse 694 (1189)
T KOG1265|consen 678 KPDFMRRPDRQFDPFSE 694 (1189)
T ss_pred ChHHhhCCCcCcCCccc
Confidence 36777777777776554
No 318
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=60.85 E-value=3.3e+02 Score=31.96 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=7.6
Q ss_pred hhHHHHHHHHhh
Q 042277 91 GKIARFLTTLGK 102 (899)
Q Consensus 91 ENI~~FL~a~~~ 102 (899)
+||.-||+-+..
T Consensus 29 ~nv~eyLkl~~~ 40 (395)
T PF10267_consen 29 ENVAEYLKLASN 40 (395)
T ss_pred hhHHHHHHHhhh
Confidence 666666666654
No 319
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.53 E-value=2.1e+02 Score=29.51 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 042277 436 HGALRELRFSSDSIKQEIS 454 (899)
Q Consensus 436 ~~~l~~l~~~~~~~k~~~~ 454 (899)
...+.+||..+++.|-++.
T Consensus 137 ~~ei~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 137 DTEIANLRTEIESLKWDTL 155 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666655
No 320
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=60.38 E-value=3 Score=39.16 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=13.1
Q ss_pred EeeccccCCccccee
Q 042277 581 IFAYGQTGSGKTYTM 595 (899)
Q Consensus 581 IfAYGQTGSGKTyTM 595 (899)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999876
No 321
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=60.31 E-value=5.5e+02 Score=34.27 Aligned_cols=13 Identities=23% Similarity=0.016 Sum_probs=7.3
Q ss_pred hhhhhhhhhcCCC
Q 042277 489 RRLFNEVQDLKGN 501 (899)
Q Consensus 489 R~l~N~iqelkGn 501 (899)
|.+-.+++=++|+
T Consensus 303 ~~i~eQi~~l~~S 315 (1109)
T PRK10929 303 NTLREQSQWLGVS 315 (1109)
T ss_pred HHHHHHHHHhccC
Confidence 3445566666664
No 322
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=60.28 E-value=3.6e+02 Score=32.10 Aligned_cols=62 Identities=23% Similarity=0.360 Sum_probs=27.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhH
Q 042277 419 QRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDL-YCLGVRLKALAGAAENY 481 (899)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~-~~l~~~l~~l~~~~~~y 481 (899)
+.|...|..-..+.+...-.|..-|.-...++.++.... +..+++ +.|...+.+=+...+.|
T Consensus 284 ~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek-~c~eEL~~al~~A~~GhaR~lEqY 346 (488)
T PF06548_consen 284 QRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEK-KCTEELDDALQRAMEGHARMLEQY 346 (488)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356655555555544444444443333333444443333 333333 33455554444444444
No 323
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=60.15 E-value=5.8 Score=42.09 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=17.7
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
+++.++ .+-.+++.|+.||||||.-..
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHHHH
Confidence 344445 566899999999999987643
No 324
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=59.61 E-value=4.9 Score=41.38 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=21.0
Q ss_pred hHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 566 TQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 566 v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
+.+++..++.. ...+.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34566665643 3456678999999999874
No 325
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=59.58 E-value=4.3 Score=45.96 Aligned_cols=29 Identities=41% Similarity=0.538 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..++..++.+. ..|+-.|.||||||++|-
T Consensus 134 ~~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 134 ASVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 35555555432 357889999999999983
No 326
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=59.52 E-value=70 Score=38.55 Aligned_cols=45 Identities=36% Similarity=0.446 Sum_probs=26.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHH
Q 042277 349 EKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVR 408 (899)
Q Consensus 349 eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~ 408 (899)
...+++-|..-|+-||+..+ .++..|+++|.++|.+|...+.++.
T Consensus 330 kVDeL~~E~~vLrgElea~k---------------qak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 330 KVDELTCEKDVLRGELEAVK---------------QAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred HHHhhccHHHHHhhHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666665444 3455577777777776666555543
No 327
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.50 E-value=6.1 Score=45.86 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.0
Q ss_pred CeeEeeccccCCcccceeec
Q 042277 578 NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~G 597 (899)
...|+.+|+||+|||+|+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46788999999999999843
No 328
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=59.49 E-value=1.8e+02 Score=28.75 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=18.4
Q ss_pred HHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHH
Q 042277 369 KTYELRCLHMETEYKGAKSGFEERIKELEHLLQ 401 (899)
Q Consensus 369 ~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~ 401 (899)
...-.++.++-+.+..+|.+|.+||..+...++
T Consensus 46 ~~v~kql~~vs~~l~~tKkhLsqRId~vd~klD 78 (126)
T PF07889_consen 46 ASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLD 78 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444455555556666666666666555444
No 329
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.38 E-value=74 Score=35.11 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=49.8
Q ss_pred EEeceeeCCCCChhhHHhch-HHHHHHHH---cCCC--eeEeeccccCCcccceeecCCCC-------------CCCccc
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLIRSVL---DGYN--VCIFAYGQTGSGKTYTMSGPSGP-------------HEEDWG 607 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV~svL---dGyN--~cIfAYGQTGSGKTyTM~G~~~~-------------~~~~~G 607 (899)
.++..|=+-+..-++|-+.+ -||.+.=| =|.+ -.++.||+.|+|||-..-.-... -..-.|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 34455555566666676666 47666544 2443 34889999999997433110000 011245
Q ss_pred hhHHHHHHHHHhhhccCCCe
Q 042277 608 VNYRALNDLFNLSQNRRSSI 627 (899)
Q Consensus 608 IipRal~~LF~~~~~~~~~~ 627 (899)
=-||.++++|....+....+
T Consensus 232 egprmvrdvfrlakenapsi 251 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENAPSI 251 (408)
T ss_pred cCcHHHHHHHHHHhccCCcE
Confidence 66999999999887766553
No 330
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=58.99 E-value=1.5e+02 Score=34.75 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHc----c--CCCCCCCCCChhhHhhhhhcCCCc
Q 042277 769 KSLSALGDVIFALA----Q--KSPHVPYRNSKLTQVLQSSLGGQA 807 (899)
Q Consensus 769 kSLsaLg~VI~aLa----~--k~~hVPYRdSKLT~LLqdsLGGns 807 (899)
+++.|.-+|+..++ . .+-.+||+.+ .|+++++|
T Consensus 369 ~amvafLd~L~qf~~e~~~k~~~~~lPy~ie------~d~i~d~~ 407 (447)
T KOG2751|consen 369 KAMVAFLDCLKQFADELEKKDTSFNLPYDIE------KDKLNDPS 407 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCcchhh------cccccCCc
Confidence 44555555555543 2 2234666653 35666654
No 331
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=58.97 E-value=6.4 Score=43.54 Aligned_cols=18 Identities=44% Similarity=0.549 Sum_probs=14.7
Q ss_pred eEeeccccCCcccceeec
Q 042277 580 CIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~G 597 (899)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 455669999999999864
No 332
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=58.94 E-value=4.7 Score=45.83 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..++..++++. +.|+-.|-||||||+++-
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 46666777766 778999999999998873
No 333
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=58.82 E-value=3.5 Score=40.49 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=12.2
Q ss_pred EeeccccCCccccee
Q 042277 581 IFAYGQTGSGKTYTM 595 (899)
Q Consensus 581 IfAYGQTGSGKTyTM 595 (899)
+--.|+||+||||+-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 446799999999864
No 334
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=58.80 E-value=2.6e+02 Score=29.97 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042277 338 LEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLH 377 (899)
Q Consensus 338 ~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~ 377 (899)
+.+.++.++..++++...++.++......+-++|+.....
T Consensus 66 ~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 66 LSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456788888999998888888888888888888765443
No 335
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=58.79 E-value=7.9 Score=45.69 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=45.1
Q ss_pred EEEEEecCCCCCCCC-CCCceEEEEccCCeEEecCCCCCC-------CCCceeEEeceeeCCCCChhhHHhch-HHHHH-
Q 042277 502 IRVYCRIRPFLPGQT-KKQTTIEYIGENGELIFGNPSKPG-------KDGQRMFKFNKVFGPDATQAEVFSDT-QPLIR- 571 (899)
Q Consensus 502 IrV~~RVRP~~~~E~-~~~~~v~~~~~~~~v~i~~p~~~~-------~~~~k~F~FD~VF~~~atQeeVF~~v-~pLV~- 571 (899)
=..+++|.++...+. ..+..+......+.++-.-|.... ......-+|+.|.+-+..-+++.+.+ .|+..
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p 206 (438)
T PTZ00361 127 PEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHP 206 (438)
T ss_pred CEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCH
Confidence 367889988876553 445555554444444322221100 00011123444433333333333333 23332
Q ss_pred HHHc--CC--CeeEeeccccCCccccee
Q 042277 572 SVLD--GY--NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 572 svLd--Gy--N~cIfAYGQTGSGKTyTM 595 (899)
..+. |. ...|+-||++|+|||++.
T Consensus 207 ~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 207 ELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred HHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 1222 21 234778999999999876
No 336
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=58.78 E-value=5.7 Score=39.19 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=19.5
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
++..++++. .-++..|+||||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 455555553 3446778999999998865
No 337
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=58.58 E-value=2.2e+02 Score=29.23 Aligned_cols=23 Identities=35% Similarity=0.264 Sum_probs=9.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 042277 347 MKEKDQQMLENLALKQELEMAKK 369 (899)
Q Consensus 347 ~~eke~~~~e~~~LkqeL~~~k~ 369 (899)
.++.++....+.++..++...+.
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443333
No 338
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=58.07 E-value=11 Score=46.71 Aligned_cols=93 Identities=24% Similarity=0.292 Sum_probs=53.2
Q ss_pred EEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchh----HHHHHHHHHhhhc
Q 042277 547 FKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVN----YRALNDLFNLSQN 622 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIi----pRal~~LF~~~~~ 622 (899)
|....=|.|.-.|..-|.. +++.+-+|...- ..+|.|||||||||-.--... ..+-|+ -.....|+.....
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~-~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQV-NRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557777777765554 455555563222 378999999999996521100 011111 1233445554443
Q ss_pred cCCCeeEEEEEEEEEEeccccc
Q 042277 623 RRSSIMYEVAVQMVEIYNEQVR 644 (899)
Q Consensus 623 ~~~~~~~~V~vS~lEIYnE~V~ 644 (899)
--+.......|||+.-|+-..|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 3334457888999999976543
No 339
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=58.01 E-value=4.3 Score=41.88 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=18.0
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.|..++.--. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 4555554333 455699999999998754
No 340
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=57.73 E-value=3.6e+02 Score=31.38 Aligned_cols=174 Identities=22% Similarity=0.297 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHhhhhHHHHHHHhhcCCchhhHHHHHHHHHHHh----hhhhHHHhhh
Q 042277 262 ACLLRKVVQEIERRISTQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMNQLQQIKT----EKSKLEEKKK 337 (899)
Q Consensus 262 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~~~----e~~k~ee~~~ 337 (899)
++--.|+|+++.|. .|..|-|-++||-+ + || +|+....+.++.|+. |-...=++..
T Consensus 347 EetHQkkiEdLQRq---------HqRELekLreEKdr--L-----LA----EETAATiSAIEAMKnAhrEEmeRELeKsq 406 (593)
T KOG4807|consen 347 EETHQKKIEDLQRQ---------HQRELEKLREEKDR--L-----LA----EETAATISAIEAMKNAHREEMERELEKSQ 406 (593)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHh--h-----hh----hhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455666665442 35567777888752 2 22 233333445555543 1111222233
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh------hHHHHHHHHHHHHHHHHhHHHH-H
Q 042277 338 LEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKS------GFEERIKELEHLLQVSRNKVRE-L 410 (899)
Q Consensus 338 ~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~------~le~~i~ele~~l~~~~~~~~~-l 410 (899)
+.+.++.-|.++ ...++..++.+|+.+...|..+|.+--.-.+.+.+ .-+..-++|..+-+++.+.+.+ +
T Consensus 407 SvnsdveaLRrQ---yleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEI 483 (593)
T KOG4807|consen 407 SVNSDVEALRRQ---YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEI 483 (593)
T ss_pred ccccChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHH
Confidence 455566555443 45678888999999998898888753221111111 1222333333333333333321 1
Q ss_pred hhcch------h--hHHHhhhh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 042277 411 EANSD------S--KYQRWSRK-ESIYQSFMDLQHGALRELRFSSDSIKQEISKAQK 458 (899)
Q Consensus 411 e~~~~------~--~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~ 458 (899)
-.+.. + .+-.-+.+ .-.+.-++..-...|+=|+....++|.+++-+++
T Consensus 484 trLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalr 540 (593)
T KOG4807|consen 484 TRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALR 540 (593)
T ss_pred HHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11000 0 00000101 1122335556666788888888888888876654
No 341
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=57.27 E-value=9.6 Score=41.14 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=29.2
Q ss_pred eCCCCChhhHHhchHHHHHHHHc-C-CCeeEeeccccCCcccce
Q 042277 553 FGPDATQAEVFSDTQPLIRSVLD-G-YNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 553 F~~~atQeeVF~~v~pLV~svLd-G-yN~cIfAYGQTGSGKTyT 594 (899)
|++-..|+.+-...+.+++.+.. | .=..++-||+.|.|||+.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 44556789998888889998874 3 223577899999999843
No 342
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=57.02 E-value=3.9e+02 Score=31.59 Aligned_cols=18 Identities=17% Similarity=-0.036 Sum_probs=12.0
Q ss_pred HHHHHHHcCCCeeEeecc
Q 042277 568 PLIRSVLDGYNVCIFAYG 585 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYG 585 (899)
.-|..+-.|..+.|...+
T Consensus 367 ~di~~v~~Gq~V~v~~~a 384 (457)
T TIGR01000 367 NDISGIKVGQKVRFKLTQ 384 (457)
T ss_pred HHHhhcCCCCeEEEEEec
Confidence 345666678888876554
No 343
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.99 E-value=2.4e+02 Score=29.08 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQEL 364 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL 364 (899)
++..+..+.+....++..|+++|
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 344
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=56.75 E-value=7.4 Score=43.65 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=25.7
Q ss_pred eCCCCChhhHHhc-hHHHH-HHHHcCCCeeEeeccccCCcccceee
Q 042277 553 FGPDATQAEVFSD-TQPLI-RSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 553 F~~~atQeeVF~~-v~pLV-~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
|-|-+.-+-++++ +..++ ..+..+----.+-||+.|+|||.|..
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3344444444544 33333 34444344446789999999999973
No 345
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.60 E-value=61 Score=32.99 Aligned_cols=14 Identities=7% Similarity=0.330 Sum_probs=8.0
Q ss_pred hHHHHHHHHhhhhh
Q 042277 480 NYHAVLAENRRLFN 493 (899)
Q Consensus 480 ~y~~~~~e~R~l~N 493 (899)
.|+.....||+++|
T Consensus 156 ~~~k~w~kRKri~k 169 (169)
T PF07106_consen 156 KWRKEWKKRKRICK 169 (169)
T ss_pred HHHHHHHHHHHHhC
Confidence 44455556777654
No 346
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.58 E-value=5.9 Score=46.13 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=25.4
Q ss_pred ChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 558 TQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 558 tQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
.|+.+.....++...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 455555543444444445655567779999999998764
No 347
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=56.49 E-value=4.1e+02 Score=31.68 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=13.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q 042277 437 GALRELRFSSDSIKQEISKAQKSHA 461 (899)
Q Consensus 437 ~~l~~l~~~~~~~k~~~~~~q~~~~ 461 (899)
.+|+-|+.......++...+|.+|.
T Consensus 478 SALdlLkrEKe~~EqefLslqeEfQ 502 (527)
T PF15066_consen 478 SALDLLKREKETREQEFLSLQEEFQ 502 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566665555443
No 348
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=56.39 E-value=47 Score=37.12 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=9.0
Q ss_pred HHHHHhhhhhhhhhcCCC
Q 042277 484 VLAENRRLFNEVQDLKGN 501 (899)
Q Consensus 484 ~~~e~R~l~N~iqelkGn 501 (899)
.|.|||-|.-++|.|+..
T Consensus 113 WLEERR~lQgEmQ~LrDK 130 (351)
T PF07058_consen 113 WLEERRFLQGEMQQLRDK 130 (351)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 349
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.19 E-value=1.1e+02 Score=37.54 Aligned_cols=12 Identities=42% Similarity=0.277 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 042277 262 ACLLRKVVQEIE 273 (899)
Q Consensus 262 ~~~~~~~~~~~e 273 (899)
+..|++|.++-+
T Consensus 391 ~eal~~~~e~~~ 402 (652)
T COG2433 391 AEALSKVKEEER 402 (652)
T ss_pred HHHHHHHHhhhc
Confidence 455666655433
No 350
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=56.04 E-value=1.7e+02 Score=32.58 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhh
Q 042277 343 VAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWS 422 (899)
Q Consensus 343 ~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~ 422 (899)
...|-+|.+........+...+ ++.+.|.-++.+......+++..+..+..+..+-..|+.
T Consensus 137 ydlL~kE~~lr~~R~~a~~r~~---------e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~---------- 197 (267)
T PF10234_consen 137 YDLLGKEVELREERQRALARPL---------ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEA---------- 197 (267)
T ss_pred HHHHhchHhHHHHHHHHHcCCc---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 042277 423 RKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQK---SHADDLYCLGVRLKALAGAA 478 (899)
Q Consensus 423 ~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~---~~~~~~~~l~~~l~~l~~~~ 478 (899)
.++.-+..+...++-+..+|. .|.++++.++..|+.+.+..
T Consensus 198 ---------------KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 198 ---------------KIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
No 351
>PTZ00424 helicase 45; Provisional
Probab=55.97 E-value=6.1 Score=45.21 Aligned_cols=28 Identities=43% Similarity=0.674 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
...+..+++|.|+. ..++||||||.+..
T Consensus 56 ~~ai~~i~~~~d~i--i~apTGsGKT~~~~ 83 (401)
T PTZ00424 56 QRGIKPILDGYDTI--GQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHHHhCCCCEE--EECCCCChHHHHHH
Confidence 35678889999864 57899999997653
No 352
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=55.75 E-value=76 Score=38.77 Aligned_cols=18 Identities=0% Similarity=0.001 Sum_probs=10.7
Q ss_pred eEEeceeeCCCCChhhHH
Q 042277 546 MFKFNKVFGPDATQAEVF 563 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF 563 (899)
.+.|+..+..=+++.+++
T Consensus 356 ~~~~~~~~~niT~~~~~~ 373 (555)
T TIGR03545 356 VGEIKGEVSNITNDHDLL 373 (555)
T ss_pred cceEEEEEEecCCChhhh
Confidence 456776666556655554
No 353
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.72 E-value=1.1e+02 Score=36.56 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=7.4
Q ss_pred eeEEeceeeCCC
Q 042277 545 RMFKFNKVFGPD 556 (899)
Q Consensus 545 k~F~FD~VF~~~ 556 (899)
..|.|=.-|++.
T Consensus 194 ~~~~fpt~f~~~ 205 (472)
T TIGR03752 194 SKFSFPTSFDNA 205 (472)
T ss_pred CcccCccccccc
Confidence 457776667544
No 354
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=55.62 E-value=2.4e+02 Score=36.42 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=24.6
Q ss_pred hhhHHhchHHHHHHHHcCC------CeeEeeccccCCccccee
Q 042277 559 QAEVFSDTQPLIRSVLDGY------NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 559 QeeVF~~v~pLV~svLdGy------N~cIfAYGQTGSGKTyTM 595 (899)
|...-..+...|..+..|. .+.++-+|+||+|||++.
T Consensus 570 Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 570 QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 4444455555555555553 356778899999999775
No 355
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=55.59 E-value=6.4 Score=46.29 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccce
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyT 594 (899)
..+..+++|.| +++.++||||||.+
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 45677889988 56778999999976
No 356
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.50 E-value=2.8e+02 Score=29.34 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHh
Q 042277 387 SGFEERIKELEHLLQVSRNKVRELE 411 (899)
Q Consensus 387 ~~le~~i~ele~~l~~~~~~~~~le 411 (899)
.+|..++..++..+++...++..++
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555543
No 357
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=55.39 E-value=2.8e+02 Score=29.33 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhh---hHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHH
Q 042277 363 ELEMAKKTYELRCLHMETEYKGAKS---GFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGAL 439 (899)
Q Consensus 363 eL~~~k~~~e~~~~~le~~~~~~~~---~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l 439 (899)
+|..+-..|.+++..+..+++..+. .++.++.+.+..+...+.++..++.+.+.+. +.. -..++.-+......+
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dkn--L~e-ReeL~~kL~~~~~~l 134 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKN--LAE-REELQRKLSQLEQKL 134 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chh-HHHHHHHHHHHHHHH
Confidence 3333444555555555555554443 3666777777777777777777666544221 110 011223333333344
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 440 RELRFSSDSIKQEISKAQKSHADDLYCLGVR 470 (899)
Q Consensus 440 ~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~ 470 (899)
++-...+..+...+.-..+.|..++..-...
T Consensus 135 ~~~~~ki~~Lek~leL~~k~~~rql~~e~kK 165 (194)
T PF15619_consen 135 QEKEKKIQELEKQLELENKSFRRQLASEKKK 165 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444444444455555555555555433333
No 358
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=55.17 E-value=7.1 Score=40.04 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..++.++.|.| ++..++||+|||.+.
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 44566667887 577899999999773
No 359
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.96 E-value=4.8e+02 Score=31.96 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhh--------HHHHHHHHHHHHHHHHhHHHHH
Q 042277 365 EMAKKTYELRCLHMETEYKGAKSG--------FEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 365 ~~~k~~~e~~~~~le~~~~~~~~~--------le~~i~ele~~l~~~~~~~~~l 410 (899)
..++..+-.++.++..-+++++.+ +.+++++++..+......+..+
T Consensus 218 ~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 218 KELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555555666666666665543 6677777777777777777655
No 360
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=54.77 E-value=6.4 Score=45.14 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=26.7
Q ss_pred CCChhhHHhchHHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 556 DATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 556 ~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
+..|..+|+.+-..+.. .....+|.-|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
Confidence 34688898886333332 34456788999999999987
No 361
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=54.67 E-value=4.6 Score=43.86 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.6
Q ss_pred CCeeEeeccccCCcccceeec
Q 042277 577 YNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~G 597 (899)
.+..++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 677788889999999999965
No 362
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.67 E-value=4.3e+02 Score=31.27 Aligned_cols=42 Identities=19% Similarity=0.119 Sum_probs=20.3
Q ss_pred HHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 042277 369 KTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 369 ~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~l 410 (899)
+.|++-+-.++-+..-.+..++-+++.|+.....+|.-+..+
T Consensus 282 rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arl 323 (502)
T KOG0982|consen 282 RRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARL 323 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333444333344445555555555555555555444
No 363
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=54.64 E-value=3.8 Score=42.56 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=13.6
Q ss_pred eEeeccccCCcccceeec
Q 042277 580 CIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~G 597 (899)
.++.+|+||||||.++..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 578999999999998853
No 364
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=54.52 E-value=6.1 Score=49.15 Aligned_cols=35 Identities=37% Similarity=0.487 Sum_probs=27.3
Q ss_pred hHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 561 EVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 561 eVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
-||.-.......++ .|.|-||+-.|.+|||||+|+
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 46766554444444 789999999999999999885
No 365
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=54.51 E-value=6.5 Score=47.36 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=24.7
Q ss_pred chHHHHHHHHcCCC--eeEeeccccCCccccee
Q 042277 565 DTQPLIRSVLDGYN--VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 565 ~v~pLV~svLdGyN--~cIfAYGQTGSGKTyTM 595 (899)
+|+..++..+.|.. .-++-+|++|||||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 46777887776664 45778999999999998
No 366
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.44 E-value=1.7e+02 Score=30.54 Aligned_cols=24 Identities=13% Similarity=0.415 Sum_probs=10.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 042277 439 LRELRFSSDSIKQEISKAQKSHAD 462 (899)
Q Consensus 439 l~~l~~~~~~~k~~~~~~q~~~~~ 462 (899)
+..|...+..+...+..++.+..+
T Consensus 153 ~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 153 LQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 367
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.39 E-value=2.3e+02 Score=36.19 Aligned_cols=24 Identities=8% Similarity=-0.032 Sum_probs=18.1
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcc
Q 042277 118 MKPVINCLLNLRAEYITGGDIRPL 141 (899)
Q Consensus 118 ~~~Vv~cl~aL~~~~~~~g~~~~~ 141 (899)
.-.-++|++|+..++...++.-|.
T Consensus 271 ~l~~lD~l~a~a~~a~~~~~~~P~ 294 (782)
T PRK00409 271 IFDELDFIFARARYAKALKATFPL 294 (782)
T ss_pred HHHHHHHHHHHHHHHHHCCCccce
Confidence 335578999999999888776554
No 368
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=54.39 E-value=6.1 Score=44.89 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=20.9
Q ss_pred hHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 566 TQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 566 v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
+..++..++.+. ..|+..|.||||||++|-
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 345555555432 346778999999999884
No 369
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=53.81 E-value=6.4e+02 Score=33.02 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhhhhHh
Q 042277 266 RKVVQEIERRISTQADHLR 284 (899)
Q Consensus 266 ~~~~~~~e~~~~~~~~~~~ 284 (899)
.++|.|+=.++-.|.++|.
T Consensus 126 ~s~i~elv~~fNIQi~NLC 144 (1072)
T KOG0979|consen 126 KSEIEELVAHFNIQIDNLC 144 (1072)
T ss_pred hHHHHHHHHHHhcccCchh
Confidence 3556666666666665554
No 370
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.75 E-value=3.7e+02 Score=32.74 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042277 455 KAQKSHADDLYCLGVRLKALAGAAENY 481 (899)
Q Consensus 455 ~~q~~~~~~~~~l~~~l~~l~~~~~~y 481 (899)
-..+.|+.++..++..++.|..+.+..
T Consensus 655 ~AErdFk~Elq~~~~~~~~L~~~iET~ 681 (741)
T KOG4460|consen 655 DAERDFKKELQLIPDQLRHLGNAIETV 681 (741)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344556666666666666665554443
No 371
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=53.49 E-value=7.2e+02 Score=33.55 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=17.3
Q ss_pred hhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHH
Q 042277 798 VLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKF 831 (899)
Q Consensus 798 LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~F 831 (899)
.|-++||+||.. |+-.=|...--.+-+.+|-+
T Consensus 1199 ALAEtf~snCgv--LALDEPTTNLD~~niesLa~ 1230 (1294)
T KOG0962|consen 1199 ALAETFGSNCGV--LALDEPTTNLDRENIESLAK 1230 (1294)
T ss_pred HHHHHHhhcccc--ccccCCccccCHhHHHHHHH
Confidence 467788888873 44444544333444444433
No 372
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=53.45 E-value=3.5e+02 Score=29.88 Aligned_cols=69 Identities=25% Similarity=0.232 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHhhh-hhHHHHHHHHHHHHHHHHhHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMA--------KKTYELRCLHMETEYKGAK-SGFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~--------k~~~e~~~~~le~~~~~~~-~~le~~i~ele~~l~~~~~~~~~l 410 (899)
.|.+++.+.++....+..+..+|..- =+.+=.+|..|..+-++.- ..-+.+|.+|+.+|..-+.+..++
T Consensus 178 ~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seEl 255 (330)
T KOG2991|consen 178 FFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEEL 255 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHH
Confidence 44555555555555555555555431 1222233333333222221 123445666666665555555544
No 373
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=53.13 E-value=4.7 Score=46.04 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=21.5
Q ss_pred hHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 566 TQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 566 v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
+..++..++.+ ...|+..|+||||||++|-.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 34556555542 34477899999999999854
No 374
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.98 E-value=1.5e+02 Score=31.08 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 042277 384 GAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADD 463 (899)
Q Consensus 384 ~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~ 463 (899)
++...++.++..|+..++.++.++.+++...+.....-... .-.......+.+|+.....++.++.+....=-+.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 042277 464 LYCLGVRLKALAGAAENY 481 (899)
Q Consensus 464 ~~~l~~~l~~l~~~~~~y 481 (899)
+..+...+..+.+++..+
T Consensus 137 i~~~~~~~~~~~~~anrw 154 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
No 375
>PRK09183 transposase/IS protein; Provisional
Probab=52.72 E-value=6.2 Score=43.14 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=16.7
Q ss_pred cCCCeeEeeccccCCcccceeec
Q 042277 575 DGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 575 dGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4665 45699999999998865
No 376
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=52.60 E-value=4 Score=38.25 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.6
Q ss_pred EeeccccCCcccceee
Q 042277 581 IFAYGQTGSGKTYTMS 596 (899)
Q Consensus 581 IfAYGQTGSGKTyTM~ 596 (899)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999998773
No 377
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.33 E-value=3.1e+02 Score=31.74 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=14.9
Q ss_pred cchhhhhHHHHHHHHhhcCCCccccccccc
Q 042277 86 SMSRSGKIARFLTTLGKLGISRFEMSDLEK 115 (899)
Q Consensus 86 ~~~~~ENI~~FL~a~~~~Gvp~F~~~DL~e 115 (899)
.|-+|-.+..||-. ..| ..|+..+=|+
T Consensus 41 QF~~F~~L~~WL~~--~~g-~~f~~p~e~D 67 (359)
T PF10498_consen 41 QFYYFTSLCAWLIS--KAG-RKFEQPQEYD 67 (359)
T ss_pred HHHHHHHHHHHHHH--hcC-CCCCCCcccC
Confidence 34455566666543 666 5576665444
No 378
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=52.26 E-value=7.7 Score=45.18 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=21.4
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 45677888987 788899999999863
No 379
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=52.18 E-value=8.4 Score=47.86 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=23.5
Q ss_pred hchHHHHHHHHc-----CCCeeEeeccccCCcccceeec
Q 042277 564 SDTQPLIRSVLD-----GYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 564 ~~v~pLV~svLd-----GyN~cIfAYGQTGSGKTyTM~G 597 (899)
..+..++.++.. |.+..++.. +||||||+||..
T Consensus 245 ~av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 245 RAVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 346677777766 445555544 999999999965
No 380
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.92 E-value=3.1e+02 Score=33.35 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=11.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 042277 345 KLMKEKDQQMLENLALKQELEMA 367 (899)
Q Consensus 345 ~l~~eke~~~~e~~~LkqeL~~~ 367 (899)
.+...|++.-.+++.+.|+.+..
T Consensus 592 ~l~~~k~~QlQ~l~~~~eer~~i 614 (741)
T KOG4460|consen 592 LLCDQKKKQLQDLSYCREERKSL 614 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554433
No 381
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=51.73 E-value=1.7e+02 Score=36.94 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYE 372 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e 372 (899)
+++..|..+...+..++..|++++..+....+
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666555444
No 382
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=51.59 E-value=5.4 Score=38.36 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.2
Q ss_pred EeeccccCCccccee
Q 042277 581 IFAYGQTGSGKTYTM 595 (899)
Q Consensus 581 IfAYGQTGSGKTyTM 595 (899)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999765
No 383
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.59 E-value=2.6e+02 Score=27.84 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 427 IYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVR 470 (899)
Q Consensus 427 ~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~ 470 (899)
.++.-+......+..++..+..++.-+.....+|.-++...+..
T Consensus 98 ~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E 141 (151)
T PF11559_consen 98 QLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKERE 141 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555555555555555555555444433
No 384
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=51.18 E-value=4.9e+02 Score=30.94 Aligned_cols=36 Identities=8% Similarity=0.299 Sum_probs=13.7
Q ss_pred HHHHhhhccccccCCCCchHHHHHHHHHHHHHHHHhh
Q 042277 241 VVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRIS 277 (899)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 277 (899)
++..++++.++.+..+.- .....|.+=+.+++.++.
T Consensus 143 l~~~yi~~~~~~~~~~~~-~~~~fl~~ql~~~~~~L~ 178 (498)
T TIGR03007 143 LLTIFVEETLGSKRQDSD-SAQRFIDEQIKTYEKKLE 178 (498)
T ss_pred HHHHHHHhhcccchhhhH-HHHHHHHHHHHHHHHHHH
Confidence 333344444443333321 122333333344444433
No 385
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.15 E-value=4.9 Score=47.51 Aligned_cols=66 Identities=29% Similarity=0.382 Sum_probs=40.9
Q ss_pred HHHHHcCCCeeEeeccccCCcccceeecCCC----------CCCCccchhHH---------HHHHHHHhhhccCCCeeEE
Q 042277 570 IRSVLDGYNVCIFAYGQTGSGKTYTMSGPSG----------PHEEDWGVNYR---------ALNDLFNLSQNRRSSIMYE 630 (899)
Q Consensus 570 V~svLdGyN~cIfAYGQTGSGKTyTM~G~~~----------~~~~~~GIipR---------al~~LF~~~~~~~~~~~~~ 630 (899)
|..+.+|.+. +|++|||||||+...+|-. ......|..|+ .+.+||... ....|.
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea----~k~~~~ 178 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEA----RKFSYL 178 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHH----Hhhccc
Confidence 5556677765 8999999999999988520 00111111222 235566644 334577
Q ss_pred EEEEEEEEecc
Q 042277 631 VAVQMVEIYNE 641 (899)
Q Consensus 631 V~vS~lEIYnE 641 (899)
-.+-.+.+|+.
T Consensus 179 s~~~~~~~ygg 189 (482)
T KOG0335|consen 179 SGMKSVVVYGG 189 (482)
T ss_pred ccceeeeeeCC
Confidence 77888889976
No 386
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=51.15 E-value=7.8 Score=42.97 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.4
Q ss_pred cCC-CeeEeeccccCCcccceeec
Q 042277 575 DGY-NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 575 dGy-N~cIfAYGQTGSGKTyTM~G 597 (899)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 554 45667799999999998743
No 387
>PRK13764 ATPase; Provisional
Probab=51.00 E-value=6.9 Score=47.90 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.8
Q ss_pred CeeEeeccccCCcccceeec
Q 042277 578 NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~G 597 (899)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 44589999999999999854
No 388
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=51.00 E-value=3.1e+02 Score=28.65 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=15.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 042277 437 GALRELRFSSDSIKQEISKAQKSHADDL 464 (899)
Q Consensus 437 ~~l~~l~~~~~~~k~~~~~~q~~~~~~~ 464 (899)
..|+.|...+..++.++......|..+-
T Consensus 102 ~dl~klt~~~~~l~~eL~~ke~~~~~ee 129 (182)
T PF15035_consen 102 EDLQKLTQDWERLRDELEQKEAEWREEE 129 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665555555443
No 389
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=50.97 E-value=1.9e+02 Score=26.21 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 428 YQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRL 471 (899)
Q Consensus 428 ~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l 471 (899)
+..-+..|...++.++.++-.+-..-.++...|.+++..|...|
T Consensus 30 ~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 30 YEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666777666666666777778888887776554
No 390
>PRK04195 replication factor C large subunit; Provisional
Probab=50.58 E-value=10 Score=45.22 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=25.0
Q ss_pred hhHHhchHHHHHHHHcCC-CeeEeeccccCCccccee
Q 042277 560 AEVFSDTQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 560 eeVF~~v~pLV~svLdGy-N~cIfAYGQTGSGKTyTM 595 (899)
+++-..+..++.....|. .-.++-||++|+|||++.
T Consensus 20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333344455666666665 456888999999999876
No 391
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.54 E-value=8.3 Score=44.85 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..++.|.|+ ++-++||||||.+.
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 456778899885 55669999999764
No 392
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.47 E-value=5.3e+02 Score=31.10 Aligned_cols=28 Identities=7% Similarity=0.003 Sum_probs=12.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 042277 349 EKDQQMLENLALKQELEMAKKTYELRCL 376 (899)
Q Consensus 349 eke~~~~e~~~LkqeL~~~k~~~e~~~~ 376 (899)
+......++..+...++..++.+++++.
T Consensus 75 ~~~~~~~~~~~l~~~le~~~~~~~ek~~ 102 (475)
T PRK10361 75 INTSLEADLREVTTRMEAAQQHADDKIR 102 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 393
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=50.47 E-value=5.2 Score=49.99 Aligned_cols=66 Identities=20% Similarity=0.381 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc-----ccccccC-CCcchhhhhHHHHHHHHhhc
Q 042277 31 LLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASV-----DEANYSY-NSSMSRSGKIARFLTTLGKL 103 (899)
Q Consensus 31 e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv-----~ki~~~~-~~~~~~~ENI~~FL~a~~~~ 103 (899)
-++.||.. ++. ..| ..+.+ -|-||++|-.++..|-|-.. .+|...+ .++.-.+-|+...++++..|
T Consensus 11 ~Lv~Wv~t-f~~-~~~-~~~~~----dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~y 82 (713)
T PF05622_consen 11 SLVTWVQT-FNL-SAP-CSSYE----DLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIKSY 82 (713)
T ss_dssp HHHHHHTT-----SS----SHH----HHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCC-CCC-cCCHH----HccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 47899986 442 112 22333 48999999999999999643 3454322 23333456766666666543
No 394
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=49.98 E-value=4.5e+02 Score=30.14 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhccCCCeeEEEEEEEEEEec
Q 042277 611 RALNDLFNLSQNRRSSIMYEVAVQMVEIYN 640 (899)
Q Consensus 611 Ral~~LF~~~~~~~~~~~~~V~vS~lEIYn 640 (899)
.-++.||+.+.+.. +.++=||-
T Consensus 283 LdcRrLfDsLreEn--------lgmlfVYs 304 (401)
T PF06785_consen 283 LDCRRLFDSLREEN--------LGMLFVYS 304 (401)
T ss_pred HHHHHHHhhhcccc--------cceEEEec
Confidence 45677888665432 34666773
No 395
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=49.76 E-value=6.1 Score=36.93 Aligned_cols=15 Identities=47% Similarity=0.419 Sum_probs=12.9
Q ss_pred EeeccccCCccccee
Q 042277 581 IFAYGQTGSGKTYTM 595 (899)
Q Consensus 581 IfAYGQTGSGKTyTM 595 (899)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999765
No 396
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.60 E-value=3.7e+02 Score=32.31 Aligned_cols=16 Identities=13% Similarity=0.520 Sum_probs=9.6
Q ss_pred HHHHHHhhhhhhhHhh
Q 042277 270 QEIERRISTQADHLRT 285 (899)
Q Consensus 270 ~~~e~~~~~~~~~~~~ 285 (899)
+++-+|+..|.+.++.
T Consensus 337 ~dL~~R~K~Q~q~~~~ 352 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQ 352 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556677667665543
No 397
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=49.26 E-value=6.5 Score=40.29 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.7
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46789999999999865
No 398
>PRK11281 hypothetical protein; Provisional
Probab=49.16 E-value=8e+02 Score=32.83 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=6.6
Q ss_pred hhhhhhhhcCCC
Q 042277 490 RLFNEVQDLKGN 501 (899)
Q Consensus 490 ~l~N~iqelkGn 501 (899)
.+-.+++-++|+
T Consensus 324 ~i~eqi~~l~~s 335 (1113)
T PRK11281 324 NIKEQISVLKGS 335 (1113)
T ss_pred HHHHHHHHhccc
Confidence 344566666654
No 399
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=49.03 E-value=9.6 Score=44.92 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=21.4
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..+++|.| |++-.+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 55777889988 677889999999874
No 400
>PRK06547 hypothetical protein; Provisional
Probab=48.85 E-value=12 Score=38.34 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=18.8
Q ss_pred HHHHHHcCCCeeEeeccccCCccccee
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
.+..+..+.---|.-+|.+|||||+.-
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 445555555555667799999999764
No 401
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=48.77 E-value=5.8 Score=49.62 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=13.2
Q ss_pred HHHHHHHhhcCCCc--ccccccccCC-cchHHH
Q 042277 94 ARFLTTLGKLGISR--FEMSDLEKGS-MKPVIN 123 (899)
Q Consensus 94 ~~FL~a~~~~Gvp~--F~~~DL~eg~-~~~Vv~ 123 (899)
..++.++..|+++. -...||.+|- +..|..
T Consensus 10 ~~Lv~Wv~tf~~~~~~~~~~dL~DGv~L~evL~ 42 (713)
T PF05622_consen 10 DSLVTWVQTFNLSAPCSSYEDLSDGVALAEVLH 42 (713)
T ss_dssp HHHHHHHTT---SS---SHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCHHHccchHHHHHHHH
Confidence 34555555555442 4455566665 555533
No 402
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.67 E-value=6.3e+02 Score=31.45 Aligned_cols=199 Identities=12% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHhhhccccccCCCCchHHHHHHHHHHHHHHHHhhhhh----------hhHhhhhh------------hhhhhHHh
Q 042277 239 LSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRISTQA----------DHLRTQNN------------LFKTREEK 296 (899)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~----------~~~~~~~~------------~~~~~~~~ 296 (899)
+.++..+|....+.-..|-|..=......++++..++|.... +++..... .+......
T Consensus 295 ~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (650)
T TIGR03185 295 LLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSE 374 (650)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHH
Q ss_pred hhhHHHHHHHhhcCCchhhHHHHHHHHHHHhhhhhHHHhhhc--chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042277 297 YQSRIRVLEALASGTGEETEIVMNQLQQIKTEKSKLEEKKKL--EDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELR 374 (899)
Q Consensus 297 ~~~~~~~~e~~~~~~~~~~~~~~~~l~~~~~e~~k~ee~~~~--~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~ 374 (899)
+......+..+..........+..+++.+..+-..++.+-.. .++++..+.++.+....++..++.++...++..+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~- 453 (650)
T TIGR03185 375 LTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLET- 453 (650)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH-H
Q 042277 375 CLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQE-I 453 (899)
Q Consensus 375 ~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~-~ 453 (899)
++.++.+++..+.....+...... ....+.....-...|..-...+++. +
T Consensus 454 --------------~~~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~l~~~~~ 504 (650)
T TIGR03185 454 --------------LKEAIEALRKTLDEKTKQKINAFE---------------LERAITIADKAKKTLKEFREKLLERKL 504 (650)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhhhh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 042277 454 SKAQKSHADDLYCL 467 (899)
Q Consensus 454 ~~~q~~~~~~~~~l 467 (899)
..++..+.+.|..+
T Consensus 505 ~~le~~~~~~f~~l 518 (650)
T TIGR03185 505 QQLEEEITKSFKKL 518 (650)
T ss_pred HHHHHHHHHHHHHH
No 403
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.34 E-value=5.7e+02 Score=32.73 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=25.7
Q ss_pred hhHHhchHHHHHHHH-cCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHh
Q 042277 560 AEVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNL 619 (899)
Q Consensus 560 eeVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~ 619 (899)
++....+...++.++ .|+.+..+-.|- | .|++-+++.+.+..
T Consensus 715 eeA~~~l~~fl~~a~~~g~~~v~IIHGk----------G--------tG~Lr~~v~~~L~~ 757 (782)
T PRK00409 715 EEALERLDKYLDDALLAGYGEVLIIHGK----------G--------TGKLRKGVQEFLKK 757 (782)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCC----------C--------hhHHHHHHHHHHcC
Confidence 333333444554444 788888777764 2 27888888877653
No 404
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=48.26 E-value=3e+02 Score=27.67 Aligned_cols=31 Identities=35% Similarity=0.336 Sum_probs=14.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 042277 349 EKDQQMLENLALKQELEMAKKTYELRCLHME 379 (899)
Q Consensus 349 eke~~~~e~~~LkqeL~~~k~~~e~~~~~le 379 (899)
++......+..|..+|+......+.-..+.+
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daE 48 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAE 48 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3334444445555555554444444333333
No 405
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=48.04 E-value=5.5 Score=38.46 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=13.2
Q ss_pred EeeccccCCccccee
Q 042277 581 IFAYGQTGSGKTYTM 595 (899)
Q Consensus 581 IfAYGQTGSGKTyTM 595 (899)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999766
No 406
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=47.81 E-value=4.6e+02 Score=30.79 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=11.4
Q ss_pred HHHhchhhHHHHHHhhhh
Q 042277 54 LRACLIDGTVLCQILKRL 71 (899)
Q Consensus 54 f~~~LkdG~iLC~l~N~l 71 (899)
-+..|..-..||.=+|.+
T Consensus 7 Ak~sL~~a~~vc~~An~~ 24 (412)
T PF04108_consen 7 AKRSLSSAQHVCREANEI 24 (412)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666677777766655
No 407
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=47.74 E-value=81 Score=41.58 Aligned_cols=27 Identities=37% Similarity=0.728 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+|..++.|.|+ ++.-+||+|||.+-
T Consensus 466 ~eaI~aiL~GrDV--LVimPTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDV--FVLMPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHHHHH
Confidence 4678899999995 56669999999874
No 408
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=47.51 E-value=7 Score=42.99 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=14.8
Q ss_pred CeeEeeccccCCccccee
Q 042277 578 NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM 595 (899)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 456788999999999764
No 409
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.33 E-value=7.6e+02 Score=32.05 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=10.2
Q ss_pred cccchhhhhccccCCCC
Q 042277 200 HKFHEVFQLKQGCYADL 216 (899)
Q Consensus 200 ~~~~~~~~~~~~~~~~~ 216 (899)
+-|..+.=++||.++.+
T Consensus 132 ~~f~~~v~l~QGe~~~f 148 (908)
T COG0419 132 DTFTRSVYLPQGEFDAF 148 (908)
T ss_pred HHHhHHheeccHhHHHH
Confidence 44555556888865543
No 410
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=47.33 E-value=7 Score=40.63 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=14.9
Q ss_pred CCeeEeeccccCCcccceee
Q 042277 577 YNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~ 596 (899)
....||..||.|||||+++.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHH
Confidence 44678999999999987763
No 411
>PRK04406 hypothetical protein; Provisional
Probab=47.22 E-value=1.1e+02 Score=27.30 Aligned_cols=14 Identities=50% Similarity=0.714 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 042277 389 FEERIKELEHLLQV 402 (899)
Q Consensus 389 le~~i~ele~~l~~ 402 (899)
++.|+.+||..+.-
T Consensus 9 le~Ri~~LE~~lAf 22 (75)
T PRK04406 9 LEERINDLECQLAF 22 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554443
No 412
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=46.95 E-value=11 Score=42.40 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=24.7
Q ss_pred ChhhHHhchHHHHHHHHc--CCCeeEeeccccCCcccceee
Q 042277 558 TQAEVFSDTQPLIRSVLD--GYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 558 tQeeVF~~v~pLV~svLd--GyN~cIfAYGQTGSGKTyTM~ 596 (899)
.|+++-..+..++..... +....++-||++|+|||+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 455555555555554432 222357789999999998874
No 413
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=46.53 E-value=7.8e+02 Score=31.93 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=10.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH
Q 042277 381 EYKGAKSGFEERIKELEHLLQV 402 (899)
Q Consensus 381 ~~~~~~~~le~~i~ele~~l~~ 402 (899)
+.+..|..++..-+|+.+.++.
T Consensus 1079 Q~k~LK~~~e~e~kElk~~l~k 1100 (1189)
T KOG1265|consen 1079 QTKALKESLEKETKELKKKLDK 1100 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555554433
No 414
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=46.34 E-value=13 Score=46.30 Aligned_cols=36 Identities=33% Similarity=0.472 Sum_probs=27.6
Q ss_pred hhHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 560 AEVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 560 eeVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 346766544444444 699999999999999999986
No 415
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.29 E-value=7.9e+02 Score=31.92 Aligned_cols=6 Identities=33% Similarity=0.877 Sum_probs=2.5
Q ss_pred hhhcCC
Q 042277 495 VQDLKG 500 (899)
Q Consensus 495 iqelkG 500 (899)
+..+.|
T Consensus 450 ~~~l~~ 455 (908)
T COG0419 450 IAELAG 455 (908)
T ss_pred HHHHHh
Confidence 444444
No 416
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.19 E-value=8.2e+02 Score=32.09 Aligned_cols=94 Identities=13% Similarity=0.233 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-hhhhhhhhhcCCCEEEEEecCCC
Q 042277 433 DLQHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAEN-RRLFNEVQDLKGNIRVYCRIRPF 511 (899)
Q Consensus 433 ~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~-R~l~N~iqelkGnIrV~~RVRP~ 511 (899)
....+.|.+|...+...++++..++.+..+..+.+...|..++.. +.+| .++|+.+. ..|-|+.-+ +|.
T Consensus 866 ~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~-------In~~Fs~~F~~mg-~aGeV~L~~--~~~ 935 (1072)
T KOG0979|consen 866 EVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQ-------INERFSQLFSSMG-CAGEVSLEV--NPL 935 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHhhcc-cCceEEecc--Ccc
Confidence 334445666666666666666666666555555555555555432 2223 56666655 346555544 675
Q ss_pred CCCCCCCCceEEEEccCCeEEecCCC
Q 042277 512 LPGQTKKQTTIEYIGENGELIFGNPS 537 (899)
Q Consensus 512 ~~~E~~~~~~v~~~~~~~~v~i~~p~ 537 (899)
.-...+-.-.|.|-. ++.+.+.++.
T Consensus 936 DydkwgI~ImVkFR~-s~~L~~L~sh 960 (1072)
T KOG0979|consen 936 DYDKWGIMIMVKFRD-SEGLKVLDSH 960 (1072)
T ss_pred cHhHhceEEEEEEcc-Cccccccccc
Confidence 443333333344443 3345444443
No 417
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.19 E-value=7.3 Score=45.02 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=15.7
Q ss_pred eeEeeccccCCcccceeec
Q 042277 579 VCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM~G 597 (899)
..|.-+|+||+|||+|+..
T Consensus 138 ~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3566899999999999853
No 418
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=46.15 E-value=14 Score=45.89 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=28.0
Q ss_pred hHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 561 EVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 561 eVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 47776655555555 699999999999999999886
No 419
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.15 E-value=1.2e+02 Score=36.19 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=5.9
Q ss_pred HHHHHHHHHhh
Q 042277 610 YRALNDLFNLS 620 (899)
Q Consensus 610 pRal~~LF~~~ 620 (899)
-.++.-|.-.+
T Consensus 247 S~aMTALIGRV 257 (472)
T TIGR03752 247 SVAMTALIGRV 257 (472)
T ss_pred hHHHHHHhccc
Confidence 35666665543
No 420
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.12 E-value=9.5e+02 Score=32.84 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhhh
Q 042277 268 VVQEIERRISTQA 280 (899)
Q Consensus 268 ~~~~~e~~~~~~~ 280 (899)
-+.|+++||..-.
T Consensus 743 ri~el~~~IaeL~ 755 (1353)
T TIGR02680 743 RIAELDARLAAVD 755 (1353)
T ss_pred HHHHHHHHHHHHH
Confidence 4668888876533
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.10 E-value=4.9e+02 Score=33.28 Aligned_cols=19 Identities=5% Similarity=-0.176 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHhcCCC
Q 042277 120 PVINCLLNLRAEYITGGDI 138 (899)
Q Consensus 120 ~Vv~cl~aL~~~~~~~g~~ 138 (899)
.-++|+.|+..++...++.
T Consensus 268 ~~lD~l~a~a~~a~~~~~~ 286 (771)
T TIGR01069 268 DFLDSLQARARYAKAVKGE 286 (771)
T ss_pred HHHHHHHHHHHHHHHCCCe
Confidence 4467888888888765544
No 422
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.08 E-value=2.4e+02 Score=29.45 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=8.5
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q 042277 439 LRELRFSSDSIKQEISKAQK 458 (899)
Q Consensus 439 l~~l~~~~~~~k~~~~~~q~ 458 (899)
|++....+..++.|+..++-
T Consensus 139 l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 139 LKEKNKANEILQDELQALQL 158 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443
No 423
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=46.02 E-value=14 Score=46.08 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=26.8
Q ss_pred hHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 561 EVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 561 eVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 76 Hiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 76 HIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 46665544444444 689999999999999999886
No 424
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=46.02 E-value=5.4e+02 Score=29.98 Aligned_cols=37 Identities=8% Similarity=0.232 Sum_probs=17.9
Q ss_pred HHHHhhhccccccCCCCchHHHHHHHHHHHHHHHHhhh
Q 042277 241 VVNGILDESVDRKNGEIPHRVACLLRKVVQEIERRIST 278 (899)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 278 (899)
++...++..++.+.... ......|..-+.+++.++..
T Consensus 153 ~~~~y~~~~~~~~~~~~-~~~~~fl~~ql~~~~~~l~~ 189 (444)
T TIGR03017 153 FAQAYIDTNIELKVEPA-QKAALWFVQQIAALREDLAR 189 (444)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544433 22344555555555555443
No 425
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=45.87 E-value=13 Score=46.42 Aligned_cols=18 Identities=44% Similarity=0.674 Sum_probs=15.3
Q ss_pred CeeEeeccccCCccccee
Q 042277 578 NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM 595 (899)
|-.++.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 556778999999999877
No 426
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=45.85 E-value=15 Score=45.82 Aligned_cols=35 Identities=31% Similarity=0.554 Sum_probs=26.8
Q ss_pred hHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 561 EVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 561 eVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
-||.-......+++ .|.|-||+.-|.+|||||.|.
T Consensus 70 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 36665544444444 689999999999999999986
No 427
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=45.81 E-value=6.8 Score=46.66 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 353 QMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 353 ~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
.+.||..||+.|....++.|+...+|..+.+ ...+-+.+++..|++++..++.+++
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl~QEq----qt~Kll~qyq~RLedSE~RLr~QQ~ 429 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLLSQEQ----QTQKLLLQYQARLEDSEERLRRQQE 429 (495)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhhhhhHHHHHHHhh
Confidence 6668899999999988888877666644322 2333446666667777766665544
No 428
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=45.72 E-value=3.5e+02 Score=27.74 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=34.0
Q ss_pred hHHHHHHhhhhhHHHHHHHH----HHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 042277 377 HMETEYKGAKSGFEERIKEL----EHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSS 446 (899)
Q Consensus 377 ~le~~~~~~~~~le~~i~el----e~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 446 (899)
.|+...+.++..|-+-.+++ +..+.+.-.+...++. +...+.+++.+++...+.....|..|..+.
T Consensus 52 ~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~----~L~~~re~E~qLr~rRD~LErrl~~l~~ti 121 (159)
T PF05384_consen 52 KLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQV----RLAMLREREKQLRERRDELERRLRNLEETI 121 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444444 2233333333333333 334455566666666666666666666554
No 429
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.69 E-value=3.9e+02 Score=28.21 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=16.8
Q ss_pred HHHHHHHhhhccccccCCCCchHHHHHHHHHHHHHHH
Q 042277 238 LLSVVNGILDESVDRKNGEIPHRVACLLRKVVQEIER 274 (899)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 274 (899)
|..+|++-+.+.+|+.-+ |. .+|.-.+.+.|.
T Consensus 6 l~~~~~a~~~~~ld~~ED--P~---~~l~q~ird~e~ 37 (221)
T PF04012_consen 6 LKTLVKANINELLDKAED--PE---KMLEQAIRDMEE 37 (221)
T ss_pred HHHHHHHHHHHHHHhhcC--HH---HHHHHHHHHHHH
Confidence 444566666666656432 55 455555555444
No 430
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=45.68 E-value=15 Score=45.66 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=27.0
Q ss_pred hHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 561 EVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 561 eVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 36665544444444 689999999999999999986
No 431
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=45.66 E-value=6.9 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhh
Q 042277 263 CLLRKVVQEIERRISTQADHLRT 285 (899)
Q Consensus 263 ~~~~~~~~~~e~~~~~~~~~~~~ 285 (899)
.-|.|-+.|++-||..--+.|..
T Consensus 35 ~~l~k~~kelq~~i~el~eeLe~ 57 (859)
T PF01576_consen 35 AQLQKKIKELQARIEELEEELES 57 (859)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444443
No 432
>PLN03025 replication factor C subunit; Provisional
Probab=45.63 E-value=10 Score=42.56 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.9
Q ss_pred eEeeccccCCcccceeec
Q 042277 580 CIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~G 597 (899)
.++-||+.|+|||++...
T Consensus 36 ~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 36 NLILSGPPGTGKTTSILA 53 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 356699999999998854
No 433
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=45.54 E-value=5.8e+02 Score=30.20 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhcCC
Q 042277 465 YCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKG 500 (899)
Q Consensus 465 ~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqelkG 500 (899)
+++...+-++-.|.+..+..+.||-.=+-+|.-+-|
T Consensus 393 DdVD~kIleak~al~evtt~lrErl~RWqQIE~lcG 428 (575)
T KOG4403|consen 393 DDVDHKILEAKSALSEVTTLLRERLHRWQQIESLCG 428 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445444555666667777666555667776665
No 434
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=45.40 E-value=7.5 Score=42.25 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.3
Q ss_pred eEeeccccCCcccceee
Q 042277 580 CIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~ 596 (899)
.++-||++|+|||++..
T Consensus 44 ~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVAR 60 (261)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46779999999998863
No 435
>PRK10536 hypothetical protein; Provisional
Probab=45.35 E-value=8.8 Score=42.19 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=27.2
Q ss_pred EEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 547 FKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
|.|..|-+-+..|..... .+.+ +.-+++.|++||||||...
T Consensus 52 ~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred cCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 555556655555554333 3334 3488999999999998764
No 436
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=45.31 E-value=8.9 Score=48.45 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.6
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4667999999999765
No 437
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.20 E-value=2e+02 Score=30.45 Aligned_cols=18 Identities=44% Similarity=0.757 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHHHh
Q 042277 394 KELEHLLQVSRNKVRELE 411 (899)
Q Consensus 394 ~ele~~l~~~~~~~~~le 411 (899)
.|+|.+|.=.+.++.+++
T Consensus 135 ~e~EqLL~YK~~ql~~~~ 152 (195)
T PF12761_consen 135 REFEQLLDYKERQLRELE 152 (195)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 456666666666666654
No 438
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=45.09 E-value=7.1 Score=46.52 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=0.0
Q ss_pred cccccccc
Q 042277 108 FEMSDLEK 115 (899)
Q Consensus 108 F~~~DL~e 115 (899)
-..+||.+
T Consensus 102 vSmmDLQD 109 (495)
T PF12004_consen 102 VSMMDLQD 109 (495)
T ss_dssp --------
T ss_pred ceeecCcC
Confidence 44556655
No 439
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.08 E-value=4e+02 Score=28.14 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 042277 389 FEERIKELEHLLQVSRNKV 407 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~ 407 (899)
++.++.+++...+.+..+.
T Consensus 56 le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 56 LERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 440
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=44.94 E-value=11 Score=47.26 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=23.9
Q ss_pred hhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 559 QAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 559 QeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
|+.+-.....+...+-.|.-..++-||++|+|||++...
T Consensus 33 Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 33 QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 444443323333333345445678899999999988753
No 441
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=44.55 E-value=15 Score=45.77 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=27.6
Q ss_pred hHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 561 EVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 561 eVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 36766554455554 799999999999999999986
No 442
>PHA00729 NTP-binding motif containing protein
Probab=44.53 E-value=15 Score=39.58 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=20.4
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.+..+..|-=..|+.+|.+|+||||....
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 44555433335799999999999987643
No 443
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=44.48 E-value=16 Score=45.46 Aligned_cols=35 Identities=26% Similarity=0.509 Sum_probs=27.3
Q ss_pred hHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 561 EVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 561 eVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 36765544445444 699999999999999999986
No 444
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.47 E-value=5.2e+02 Score=29.33 Aligned_cols=12 Identities=33% Similarity=0.205 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHH
Q 042277 353 QMLENLALKQEL 364 (899)
Q Consensus 353 ~~~e~~~LkqeL 364 (899)
++.|+..|+.+-
T Consensus 172 LEeEN~~LR~Ea 183 (306)
T PF04849_consen 172 LEEENEQLRSEA 183 (306)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 445
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=44.37 E-value=12 Score=45.59 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..+|..+++|.|+ ++..+||+|||.+..
T Consensus 19 ~~~i~~il~g~dv--lv~~PTG~GKTl~y~ 46 (591)
T TIGR01389 19 EEIISHVLDGRDV--LVVMPTGGGKSLCYQ 46 (591)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHhHHHH
Confidence 4567888999986 555699999998743
No 446
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=44.23 E-value=15 Score=46.44 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=32.6
Q ss_pred hhHhhhhh------cCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccCcchhh
Q 042277 795 LTQVLQSS------LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRD 851 (899)
Q Consensus 795 LT~LLqds------LGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~~~~~ 851 (899)
.+++||-. +|+.+|..+|+. +..+.+.++-.+.++..-.+......+.+.+
T Consensus 335 V~r~lQRiGRsgHr~~~~Skg~ii~~------~r~dllE~~vi~~~a~~g~le~~~i~~~~LD 391 (814)
T COG1201 335 VNRFLQRIGRAGHRLGEVSKGIIIAE------DRDDLLECLVLADLALEGKLERIKIPKNPLD 391 (814)
T ss_pred HHHHhHhccccccccCCcccEEEEec------CHHHHHHHHHHHHHHHhCCcccCCCCCcchh
Confidence 45777754 667788777653 3577777777788777766654444444443
No 447
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=44.19 E-value=16 Score=45.60 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=28.3
Q ss_pred hhHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 560 AEVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 560 eeVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
--||.-+.....+++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346766555555555 599999999999999999886
No 448
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.16 E-value=4.3e+02 Score=28.28 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=18.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 042277 382 YKGAKSGFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 382 ~~~~~~~le~~i~ele~~l~~~~~~~~~l 410 (899)
+.+.+.+.+.+|+.....++.+++++.+.
T Consensus 94 ~~q~k~Eiersi~~a~~kie~lkkql~ea 122 (222)
T KOG3215|consen 94 LVQKKLEIERSIQKARNKIELLKKQLHEA 122 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777777777777776654
No 449
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=44.09 E-value=45 Score=36.72 Aligned_cols=98 Identities=20% Similarity=0.377 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCC--ccccccccCCCcchhhhhHHHHHHHH-hhcCC
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPA--SVDEANYSYNSSMSRSGKIARFLTTL-GKLGI 105 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PG--sv~ki~~~~~~~~~~~ENI~~FL~a~-~~~Gv 105 (899)
-.-+.+||.+++-.- .---.++++-|-||.||-+|..+|..= -|+.|..+-.. +-....--|.|+ +.+|+
T Consensus 92 ~kvLi~WiN~~L~~e----rIvVr~LeEDlfDGqilqkL~ekL~~~klev~evtqse~~---QkqKLq~Vleavnr~L~~ 164 (365)
T KOG3631|consen 92 VKVLIDWINDVLVPE----RIVVRSLEEDLFDGQILQKLFEKLAALKLEVAEVTQSEIG---QKQKLQTVLEAVNRSLQL 164 (365)
T ss_pred HHHHHHHHHHhhcch----hhhHHhhHHhhhhhHHHHHHHHHHHhhhccchhhhhhhHH---HHHHHHHHHHHHHHHhcC
Confidence 345789999987531 123457888899999999999999421 12333321111 223455566666 57899
Q ss_pred Cccc---ccccccCC-cchHHHHHHHHHHHHH
Q 042277 106 SRFE---MSDLEKGS-MKPVINCLLNLRAEYI 133 (899)
Q Consensus 106 p~F~---~~DL~eg~-~~~Vv~cl~aL~~~~~ 133 (899)
|..+ .+|.--++ +..++.-|.||..++.
T Consensus 165 ~~~q~kWsvdsIh~Kdl~ailhLLVaLa~~fr 196 (365)
T KOG3631|consen 165 PEWQAKWSVDSIHNKDLVAILHLLVALAKHFR 196 (365)
T ss_pred chhhhccchhhhccchHHHHHHHHHHHHHHcC
Confidence 9744 35665555 8888888888877654
No 450
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.81 E-value=14 Score=43.21 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=15.9
Q ss_pred eeEeeccccCCcccceee
Q 042277 579 VCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM~ 596 (899)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 568899999999999984
No 451
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.69 E-value=9.6 Score=43.05 Aligned_cols=17 Identities=47% Similarity=0.604 Sum_probs=14.0
Q ss_pred CeeEeeccccCCcccce
Q 042277 578 NVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyT 594 (899)
.+.|+-.|+||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 35688899999999964
No 452
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=43.61 E-value=11 Score=49.70 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred HhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 563 FSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 563 F~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
+..+..++.++-+|...+++. .+||||||+||.+
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
No 453
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=43.49 E-value=9.9 Score=41.86 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=16.4
Q ss_pred cCCCeeEeeccccCCccccee
Q 042277 575 DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 575 dGyN~cIfAYGQTGSGKTyTM 595 (899)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999876
No 454
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=43.17 E-value=8.6e+02 Score=31.46 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHH
Q 042277 388 GFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 388 ~le~~i~ele~~l~~~~~~~~~l 410 (899)
..++++.+|...++....+....
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~ 485 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRA 485 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 455
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=42.69 E-value=8.2 Score=48.37 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 856 MEQVASLKDTIAKKDDEIERLQLLK 880 (899)
Q Consensus 856 ~eqv~~Lk~~i~~~~~e~e~lq~l~ 880 (899)
..+++.|+.+++.++....||+..-
T Consensus 605 ~~e~~~l~~~~~~~ekr~~RLkevf 629 (722)
T PF05557_consen 605 EKEIAELKAELASAEKRNQRLKEVF 629 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666555555555443
No 456
>PRK02119 hypothetical protein; Provisional
Probab=42.46 E-value=1.4e+02 Score=26.57 Aligned_cols=19 Identities=5% Similarity=-0.012 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 042277 431 FMDLQHGALRELRFSSDSI 449 (899)
Q Consensus 431 ~~~~~~~~l~~l~~~~~~~ 449 (899)
.+..|++.|..|+..+..+
T Consensus 31 ~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 31 ALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444333
No 457
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.42 E-value=15 Score=43.54 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..++.|.++ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 567788999975 55679999999864
No 458
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=42.37 E-value=17 Score=45.33 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=27.1
Q ss_pred hHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 561 EVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 561 eVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
-||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 36665544444444 799999999999999999886
No 459
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=42.31 E-value=21 Score=42.24 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=16.7
Q ss_pred CeeEeeccccCCcccceeec
Q 042277 578 NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~G 597 (899)
...|+-+|.+|+|||+|...
T Consensus 95 p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 46788899999999999843
No 460
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=42.26 E-value=1.8e+02 Score=26.38 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=31.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 042277 349 EKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQV 402 (899)
Q Consensus 349 eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~ 402 (899)
.++.....+..--+|+...++ .+-+|+......|..||+.|..|...|+.
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~----~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQ----KVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445455555544443 34567777788888888888888777654
No 461
>PRK00295 hypothetical protein; Provisional
Probab=42.23 E-value=1.6e+02 Score=25.80 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhhH
Q 042277 431 FMDLQHGALRELRFSSD 447 (899)
Q Consensus 431 ~~~~~~~~l~~l~~~~~ 447 (899)
.+..|++.|..|+..+.
T Consensus 27 ~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 27 VLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555554443
No 462
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=42.18 E-value=17 Score=45.37 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=27.7
Q ss_pred hhHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 560 AEVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 560 eeVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
--||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 347765554455444 699999999999999999885
No 463
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.14 E-value=2.5e+02 Score=24.96 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 042277 435 QHGALRELRFSSDSIKQE 452 (899)
Q Consensus 435 ~~~~l~~l~~~~~~~k~~ 452 (899)
.+.+...|+....++|++
T Consensus 44 ~q~~reaL~~eneqlk~e 61 (79)
T COG3074 44 AQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555545444443
No 464
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.08 E-value=1.1e+02 Score=26.71 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Q 042277 431 FMDLQHGALRELRFSSDSIKQEI 453 (899)
Q Consensus 431 ~~~~~~~~l~~l~~~~~~~k~~~ 453 (899)
.+-.|+..|..|+..+..+...+
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554444333333
No 465
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=42.00 E-value=14 Score=43.83 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 56788899999755 559999999664
No 466
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=41.98 E-value=14 Score=42.99 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=29.0
Q ss_pred ChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccce
Q 042277 558 TQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 558 tQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyT 594 (899)
.|+.+.....|+=+-+-.|.=...+-||+.|+|||..
T Consensus 28 GQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4677776666766666678878888999999999964
No 467
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.59 E-value=14 Score=42.32 Aligned_cols=78 Identities=26% Similarity=0.460 Sum_probs=43.0
Q ss_pred eceeeCCCCChhhHHhch-HHHHH-HHHc--CCC--eeEeeccccCCccccee--------------ecCCCCCCCccch
Q 042277 549 FNKVFGPDATQAEVFSDT-QPLIR-SVLD--GYN--VCIFAYGQTGSGKTYTM--------------SGPSGPHEEDWGV 608 (899)
Q Consensus 549 FD~VF~~~atQeeVF~~v-~pLV~-svLd--GyN--~cIfAYGQTGSGKTyTM--------------~G~~~~~~~~~GI 608 (899)
|+-|=+-+..-++|.+.| -||.. ..|. |.. --|+-||+.|+|||-.- .|+. --..--|=
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE-lVqKYiGE 228 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE-LVQKYIGE 228 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH-HHHHHhcc
Confidence 333333333334455544 35543 2332 443 34899999999998532 1210 00011233
Q ss_pred hHHHHHHHHHhhhccCCCe
Q 042277 609 NYRALNDLFNLSQNRRSSI 627 (899)
Q Consensus 609 ipRal~~LF~~~~~~~~~~ 627 (899)
=+|.+++||.....+...+
T Consensus 229 GaRlVRelF~lArekaPsI 247 (406)
T COG1222 229 GARLVRELFELAREKAPSI 247 (406)
T ss_pred chHHHHHHHHHHhhcCCeE
Confidence 4799999999988776653
No 468
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=41.51 E-value=9.3 Score=45.61 Aligned_cols=51 Identities=25% Similarity=0.350 Sum_probs=29.5
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHH-HHHc--C--CCeeEeeccccCCcccceee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~-svLd--G--yN~cIfAYGQTGSGKTyTM~ 596 (899)
..+||.|.+.+....++.+-+..+-. ..+. | ..-.|+-||++|+|||+..-
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 36788887765554444432222110 0111 2 23358889999999999863
No 469
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=41.50 E-value=3e+02 Score=33.51 Aligned_cols=48 Identities=38% Similarity=0.270 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERI 393 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i 393 (899)
.+..|.-|++-+.-|+.+.|| ++.+.|+++.++|.+++.++.+++...
T Consensus 330 kVDeL~~E~~vLrgElea~kq----ak~Klee~i~elEEElk~~k~ea~~ar 377 (832)
T KOG2077|consen 330 KVDELTCEKDVLRGELEAVKQ----AKLKLEEKIRELEEELKKAKAEAEDAR 377 (832)
T ss_pred HHHhhccHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777776664 455566666666666666666554443
No 470
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=41.41 E-value=18 Score=45.41 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=27.0
Q ss_pred hHHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 561 EVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 561 eVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 36665544444444 799999999999999999986
No 471
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.39 E-value=3.5e+02 Score=27.50 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 389 FEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~~le~ 412 (899)
|...|.+|+..++.+..++..+..
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555566555555555555533
No 472
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=41.29 E-value=15 Score=43.46 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..++..+..|-|..+ ||++|+||||..
T Consensus 185 e~l~~~L~~~~~iil--~GppGtGKT~lA 211 (459)
T PRK11331 185 ETILKRLTIKKNIIL--QGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHhcCCCEEE--ECCCCCCHHHHH
Confidence 345555556665544 999999999765
No 473
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=41.22 E-value=2.4e+02 Score=28.05 Aligned_cols=11 Identities=9% Similarity=0.585 Sum_probs=6.1
Q ss_pred CCEEEEEecCC
Q 042277 500 GNIRVYCRIRP 510 (899)
Q Consensus 500 GnIrV~~RVRP 510 (899)
|.|--+|.|.+
T Consensus 98 g~vE~~v~V~v 108 (131)
T PF11068_consen 98 GQVESFVEVKV 108 (131)
T ss_dssp EEEEEEEEE-T
T ss_pred eeeEEEEEEec
Confidence 55666666665
No 474
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=41.17 E-value=13 Score=45.79 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..++.|.+ |++.+|||||||.+.
T Consensus 35 ~ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 35 ECIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 45677788987 577889999999874
No 475
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.06 E-value=7.6e+02 Score=30.26 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=22.0
Q ss_pred HHHHHHHHhhHHHHHHhhhhh--------HHHHHHHHHHHHHHHHhHHHHH
Q 042277 368 KKTYELRCLHMETEYKGAKSG--------FEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 368 k~~~e~~~~~le~~~~~~~~~--------le~~i~ele~~l~~~~~~~~~l 410 (899)
+..+=.++.++..=+++++.+ ++.++++++..+......+..+
T Consensus 225 ~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l 275 (569)
T PRK04778 225 QTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL 275 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 333444455555555555432 5556666666655554444443
No 476
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=40.97 E-value=9.4 Score=44.01 Aligned_cols=17 Identities=41% Similarity=0.911 Sum_probs=14.6
Q ss_pred eEeeccccCCcccceee
Q 042277 580 CIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~ 596 (899)
-|+-||.+||||||+.-
T Consensus 32 ~~~iyG~sgTGKT~~~r 48 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVR 48 (438)
T ss_pred eEEEeccCCCchhHHHH
Confidence 36899999999999873
No 477
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.66 E-value=5.3e+02 Score=32.98 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=23.1
Q ss_pred hhHHhchHHHHH-HHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHH
Q 042277 560 AEVFSDTQPLIR-SVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFN 618 (899)
Q Consensus 560 eeVF~~v~pLV~-svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~ 618 (899)
++....+...++ .++.|+.+..+-.|- ..|++-+++++...
T Consensus 704 ~eA~~~l~~~ld~a~~~g~~~v~IIHGk------------------GtG~Lr~~v~~~L~ 745 (771)
T TIGR01069 704 EEALDRLEKFLNDALLAGYEVVLIIHGK------------------GSGKLRKGVQELLK 745 (771)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcCC------------------ChhHHHHHHHHHhc
Confidence 333344444454 445788776655541 12677777777665
No 478
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.65 E-value=13 Score=41.05 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
-+++..+.. +-.++-.|++|||||-++.
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 455555543 5567899999999997764
No 479
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=40.27 E-value=5.8e+02 Score=29.74 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhcC
Q 042277 438 ALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLK 499 (899)
Q Consensus 438 ~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqelk 499 (899)
+|+-|-....+++.-+. ++.|.+-..-| ..+..|...-..|..+ .+-..|+.++..++
T Consensus 113 rL~MLv~a~~qL~~~~~--~r~Y~e~a~~L-~av~~L~~~F~~yksi-~~I~~L~~~i~~l~ 170 (383)
T PF04100_consen 113 RLQMLVTAVEQLKELAK--KRQYKEIASLL-QAVKELLEHFKPYKSI-PQIAELSKRIDQLQ 170 (383)
T ss_pred HHHHHHHHHHHHHHHHH--cCCHHHHHHHH-HHHHHHHHHHHcccCc-HHHHHHHHHHHHHH
Confidence 34555555554444333 45677654444 3445566666666542 33344555555444
No 480
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=39.87 E-value=5.8e+02 Score=30.26 Aligned_cols=18 Identities=33% Similarity=0.267 Sum_probs=6.8
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 042277 347 MKEKDQQMLENLALKQEL 364 (899)
Q Consensus 347 ~~eke~~~~e~~~LkqeL 364 (899)
.+++++...|...|-|+|
T Consensus 182 ~~e~~~l~~eE~~L~q~l 199 (447)
T KOG2751|consen 182 LKELKNLKEEEERLLQQL 199 (447)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 481
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=39.83 E-value=8.4e+02 Score=30.38 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=19.3
Q ss_pred hhhhhhhhhcCCCEEEE---EecCCCC
Q 042277 489 RRLFNEVQDLKGNIRVY---CRIRPFL 512 (899)
Q Consensus 489 R~l~N~iqelkGnIrV~---~RVRP~~ 512 (899)
.+|+-..+.++|+++-- -|.+|+.
T Consensus 471 ~q~w~ac~nlk~s~~~g~~e~r~~pLg 497 (657)
T KOG1854|consen 471 KQLWLACSNLKDSLNKGHYEMRRHPLG 497 (657)
T ss_pred HHHHHHHHHHHHhhhccccccccCchh
Confidence 36788888899888877 7888874
No 482
>PHA02244 ATPase-like protein
Probab=39.76 E-value=21 Score=41.27 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=17.1
Q ss_pred HHHHcCCCeeEeeccccCCcccceee
Q 042277 571 RSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 571 ~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..+-.|.+++| +|+||+|||+...
T Consensus 114 r~l~~~~PVLL--~GppGtGKTtLA~ 137 (383)
T PHA02244 114 KIVNANIPVFL--KGGAGSGKNHIAE 137 (383)
T ss_pred HHHhcCCCEEE--ECCCCCCHHHHHH
Confidence 33345666555 8999999997663
No 483
>PRK14974 cell division protein FtsY; Provisional
Probab=39.67 E-value=21 Score=40.76 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=17.0
Q ss_pred CCeeEeeccccCCcccceee
Q 042277 577 YNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~ 596 (899)
....|.-.|++|+|||+|+-
T Consensus 139 ~~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 35688899999999999984
No 484
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=39.53 E-value=20 Score=39.54 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=15.3
Q ss_pred CeeEeeccccCCcccceeec
Q 042277 578 NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~G 597 (899)
..+|...|++|+|||.|..-
T Consensus 72 ~~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 34565669999999999843
No 485
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.33 E-value=1.7e+02 Score=25.93 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 042277 389 FEERIKELEHLLQV 402 (899)
Q Consensus 389 le~~i~ele~~l~~ 402 (899)
++.||.+||..+.-
T Consensus 6 ~e~Ri~~LE~~laf 19 (72)
T PRK02793 6 LEARLAELESRLAF 19 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554433
No 486
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.05 E-value=1.2e+03 Score=31.95 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.4
Q ss_pred CCCCCChhhH
Q 042277 788 VPYRNSKLTQ 797 (899)
Q Consensus 788 VPYRdSKLT~ 797 (899)
+||....|..
T Consensus 839 L~a~~~~l~~ 848 (1353)
T TIGR02680 839 LPTDPDALEA 848 (1353)
T ss_pred CCCChhHHHH
Confidence 4444444444
No 487
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.05 E-value=16 Score=44.53 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..+++|.| |++.++||||||.+.
T Consensus 38 ~~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 38 LTLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 45678899998 456889999999764
No 488
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.03 E-value=32 Score=43.09 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=18.4
Q ss_pred CCCccchhHHHHHHHHHhhhccC
Q 042277 602 HEEDWGVNYRALNDLFNLSQNRR 624 (899)
Q Consensus 602 ~~~~~GIipRal~~LF~~~~~~~ 624 (899)
..+..|++-|.+.+|...+....
T Consensus 783 sGDSGGVMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 783 SGDSGGVMDRVVSQLLAELDGLS 805 (953)
T ss_pred CCCccccHHHHHHHHHHHhhccc
Confidence 44567999999999999876554
No 489
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.99 E-value=5.8e+02 Score=32.25 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=12.1
Q ss_pred CeeEeeccccCCcccceeec
Q 042277 578 NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~G 597 (899)
.+..++-...|.|||++-..
T Consensus 532 kvI~vtS~~~g~GKTtva~n 551 (726)
T PRK09841 532 NILMITGATPDSGKTFVSST 551 (726)
T ss_pred eEEEEecCCCCCCHHHHHHH
Confidence 34444444558899887644
No 490
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=38.79 E-value=21 Score=40.28 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.0
Q ss_pred eeEeeccccCCcccceee
Q 042277 579 VCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM~ 596 (899)
..|.-.|++|+|||+|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 466677999999999984
No 491
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=38.75 E-value=24 Score=40.71 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=25.9
Q ss_pred ec-eeeCCCCChhhHHhchHHHHHHHHcC---CCeeEeeccccCCcccce
Q 042277 549 FN-KVFGPDATQAEVFSDTQPLIRSVLDG---YNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 549 FD-~VF~~~atQeeVF~~v~pLV~svLdG---yN~cIfAYGQTGSGKTyT 594 (899)
|| .||+. ++.-..+-..+.+...| .+.-+.-.|++|||||..
T Consensus 49 F~~~~~G~----~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 49 FDHDFFGM----EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred cchhccCc----HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 44 67764 34444433444444454 346678999999999853
No 492
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=38.62 E-value=18 Score=43.79 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=0.0
Q ss_pred EeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccc
Q 042277 548 KFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTY 593 (899)
Q Consensus 548 ~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTy 593 (899)
.|+.+++.+ ..++.+...+..+....|+-||++|+|||+
T Consensus 63 ~f~~iiGqs-------~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~ 101 (531)
T TIGR02902 63 SFDEIIGQE-------EGIKALKAALCGPNPQHVIIYGPPGVGKTA 101 (531)
T ss_pred CHHHeeCcH-------HHHHHHHHHHhCCCCceEEEECCCCCCHHH
No 493
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.51 E-value=11 Score=44.32 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=0.0
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
+|+-.|+||+|||+|+
T Consensus 223 ~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 223 VVALVGPTGVGKTTTL 238 (424)
T ss_pred EEEEECCCCCCHHHHH
No 494
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=38.43 E-value=12 Score=42.22 Aligned_cols=12 Identities=58% Similarity=0.980 Sum_probs=0.0
Q ss_pred eeccccCCcccc
Q 042277 582 FAYGQTGSGKTY 593 (899)
Q Consensus 582 fAYGQTGSGKTy 593 (899)
..||+|||||++
T Consensus 91 ~VYGPTG~GKSq 102 (369)
T PF02456_consen 91 VVYGPTGSGKSQ 102 (369)
T ss_pred EEECCCCCCHHH
No 495
>PRK04325 hypothetical protein; Provisional
Probab=38.36 E-value=1.7e+02 Score=26.17 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042277 384 GAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQ 457 (899)
Q Consensus 384 ~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q 457 (899)
+.-..++.+|.+||..+.-...-+.+| ...+..|++.|..|+..+..+...+....
T Consensus 2 ~~~~~~e~Ri~~LE~klAfQE~tIe~L------------------N~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 2 DAVQEMEDRITELEIQLAFQEDLIDGL------------------NATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 496
>PRK11519 tyrosine kinase; Provisional
Probab=37.96 E-value=6.7e+02 Score=31.68 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHH-
Q 042277 372 ELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIK- 450 (899)
Q Consensus 372 e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k- 450 (899)
+..+.......+....-|++++.+++..|+..+.++..... +.............-..+.....++.+++.....+.
T Consensus 255 ~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~--~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~ 332 (719)
T PRK11519 255 EQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ--DKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISK 332 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHhhhhhhh
Q 042277 451 ---------QEISKAQKSHADDLYCLGVRLKALAGAAENYHAVL---AENRRLFNEV 495 (899)
Q Consensus 451 ---------~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~---~e~R~l~N~i 495 (899)
+.+.........+++.+...+..+-.....|.... +-++.+|+.+
T Consensus 333 ~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~l 389 (719)
T PRK11519 333 LYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQL 389 (719)
T ss_pred HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.87 E-value=9.3e+02 Score=30.32 Aligned_cols=206 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhcCCchhhHHHHHHHHHHHh-hhhhHHHhhhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHH
Q 042277 296 KYQSRIRVLEALASGTGEETEIVMNQLQQIKT-EKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAK---KTY 371 (899)
Q Consensus 296 ~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~~~-e~~k~ee~~~~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k---~~~ 371 (899)
.|.|++-+++--......+.....-+++..-. -..+.+++..-+.+...++....+.....-..++.+++..+ +..
T Consensus 59 ~~~s~~~~~~~~l~~Lqns~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~ 138 (716)
T KOG4593|consen 59 TSKSLLMQLEDELMQLQNSHKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQAN 138 (716)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 042277 372 ELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQ 451 (899)
Q Consensus 372 e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~ 451 (899)
...+.++-++.....+++...++.++..+..+..++...+....+..-.++..++.+.+...+.....+.+.+...++.+
T Consensus 139 ~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e 218 (716)
T KOG4593|consen 139 LKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEE 218 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhcCCC
Q 042277 452 EISKAQK-----SHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGN 501 (899)
Q Consensus 452 ~~~~~q~-----~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqelkGn 501 (899)
-....|. +-......++..-....+.......+....-.+-+++.-++.|
T Consensus 219 ~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~ 273 (716)
T KOG4593|consen 219 RADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLREN 273 (716)
T ss_pred HHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 498
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=37.69 E-value=4e+02 Score=28.42 Aligned_cols=90 Identities=19% Similarity=0.167 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHh--------hhhhHHHhhhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 042277 312 GEETEIVMNQLQQIKT--------EKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYK 383 (899)
Q Consensus 312 ~~~~~~~~~~l~~~~~--------e~~k~ee~~~~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~ 383 (899)
.||..+....+|.+.+ ..--.++++.....++..++.++..+...+..++..++..+..-++...--|.+..
T Consensus 155 RDEIrMt~aAYqtlyeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~ 234 (259)
T KOG4001|consen 155 RDEIRMTFAAYQTLYESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMK 234 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 042277 384 GAKSGFEERIKELEHLLQ 401 (899)
Q Consensus 384 ~~~~~le~~i~ele~~l~ 401 (899)
+....|.+--+.|+..|+
T Consensus 235 eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 235 EEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHHHHHHHHHHHHh
No 499
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=37.66 E-value=4e+02 Score=25.98 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhhh---HHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHH
Q 042277 360 LKQELEMAKKTYELRCLHMETEYKGAKSG---FEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQH 436 (899)
Q Consensus 360 LkqeL~~~k~~~e~~~~~le~~~~~~~~~---le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (899)
+.+-|..++.-|+.++..+++++.+.+.+ -.++++++=..-..++.+-+.+.+
T Consensus 1 F~e~l~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e------------------------ 56 (120)
T PF10482_consen 1 FMELLNKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHE------------------------ 56 (120)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHH------------------------
Q ss_pred HHHHHHHhhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhh
Q 042277 437 GALRELRFSSDSIKQEI--------SKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQ 496 (899)
Q Consensus 437 ~~l~~l~~~~~~~k~~~--------~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iq 496 (899)
.+.-|+. .+|+++ ...++.-.+.-+..-..++-+..........-.||++|+.+++
T Consensus 57 -~i~~LE~---RLRaGlCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eElk 120 (120)
T PF10482_consen 57 -NIKVLEN---RLRAGLCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEELK 120 (120)
T ss_pred -HHHHHHH---HHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
No 500
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=37.64 E-value=12 Score=40.02 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=0.0
Q ss_pred CeeEeeccccCCcccce
Q 042277 578 NVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyT 594 (899)
...++-||..|+|||++
T Consensus 12 ~~~~liyG~~G~GKtt~ 28 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTST 28 (220)
T ss_pred CcEEEEECCCCCCHHHH
Done!