Query 042277
Match_columns 899
No_of_seqs 548 out of 2595
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 07:38:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etp_A Kinesin-like protein KA 100.0 5.6E-92 1.9E-96 795.8 37.7 356 478-843 37-402 (403)
2 3u06_A Protein claret segregat 100.0 4.5E-91 1.6E-95 788.8 36.7 351 478-847 37-391 (412)
3 3cob_A Kinesin heavy chain-lik 100.0 1E-89 3.5E-94 767.9 27.4 353 496-865 1-353 (369)
4 2rep_A Kinesin-like protein KI 100.0 4.3E-89 1.5E-93 764.6 29.4 344 489-838 11-376 (376)
5 3t0q_A AGR253WP; kinesin, alph 100.0 1.4E-88 4.8E-93 755.5 30.0 339 496-842 1-348 (349)
6 2h58_A Kinesin-like protein KI 100.0 5.1E-87 1.7E-91 737.4 33.3 326 497-840 1-330 (330)
7 1f9v_A Kinesin-like protein KA 100.0 6.7E-87 2.3E-91 741.0 30.1 336 498-843 1-346 (347)
8 2vvg_A Kinesin-2; motor protei 100.0 2E-86 6.8E-91 737.2 30.9 331 499-846 3-343 (350)
9 2y65_A Kinesin, kinesin heavy 100.0 1.1E-86 3.7E-91 743.1 26.1 328 497-846 8-341 (365)
10 3lre_A Kinesin-like protein KI 100.0 1.8E-86 6E-91 739.8 27.7 329 491-838 1-355 (355)
11 3b6u_A Kinesin-like protein KI 100.0 1.5E-86 5.3E-91 742.4 27.3 341 493-846 14-361 (372)
12 1goj_A Kinesin, kinesin heavy 100.0 1.1E-85 3.8E-90 732.9 29.1 331 498-846 4-338 (355)
13 1bg2_A Kinesin; motor protein, 100.0 5.1E-86 1.7E-90 728.1 24.1 319 497-838 4-325 (325)
14 1x88_A Kinesin-like protein KI 100.0 4.1E-86 1.4E-90 737.8 22.7 338 497-845 5-357 (359)
15 3bfn_A Kinesin-like protein KI 100.0 1.1E-85 3.9E-90 737.8 25.7 336 492-846 13-355 (388)
16 2owm_A Nckin3-434, related to 100.0 1E-84 3.5E-89 743.0 30.5 342 494-848 32-423 (443)
17 3nwn_A Kinesin-like protein KI 100.0 6.5E-85 2.2E-89 727.2 26.9 329 497-838 21-359 (359)
18 2zfi_A Kinesin-like protein KI 100.0 1.1E-84 3.7E-89 728.1 27.8 331 499-844 3-360 (366)
19 1t5c_A CENP-E protein, centrom 100.0 4.6E-84 1.6E-88 718.4 31.0 325 499-847 3-337 (349)
20 2wbe_C Bipolar kinesin KRP-130 100.0 2.3E-84 8E-89 726.5 25.6 336 496-846 19-369 (373)
21 2heh_A KIF2C protein; kinesin, 100.0 2.4E-84 8.3E-89 726.8 23.6 342 480-841 32-385 (387)
22 1v8k_A Kinesin-like protein KI 100.0 2.8E-84 9.4E-89 730.5 23.8 344 479-842 51-406 (410)
23 4a14_A Kinesin, kinesin-like p 100.0 1.5E-83 5.1E-88 714.2 29.3 319 499-836 10-344 (344)
24 2nr8_A Kinesin-like protein KI 100.0 1.1E-83 3.7E-88 717.2 27.3 333 493-838 16-358 (358)
25 3gbj_A KIF13B protein; kinesin 100.0 3.2E-83 1.1E-87 713.2 27.2 323 500-837 1-349 (354)
26 1ry6_A Internal kinesin; kines 100.0 6.1E-83 2.1E-87 711.6 26.0 327 501-844 1-337 (360)
27 3dc4_A Kinesin-like protein NO 100.0 5.5E-82 1.9E-86 700.1 25.8 314 497-843 19-340 (344)
28 4h1g_A Maltose binding protein 100.0 2.4E-78 8.2E-83 731.8 32.7 335 491-840 365-713 (715)
29 2o0a_A S.cerevisiae chromosome 100.0 8.6E-34 3E-38 300.4 9.5 278 479-840 3-291 (298)
30 1ujo_A Transgelin; CH domain, 99.9 2E-27 6.7E-32 233.0 11.8 110 27-137 9-126 (144)
31 1wym_A Transgelin-2; CH domain 99.9 4.6E-27 1.6E-31 233.1 12.8 113 27-141 17-136 (155)
32 2l3g_A RHO guanine nucleotide 99.9 4.2E-27 1.4E-31 225.4 10.0 110 26-136 11-125 (126)
33 3kin_B Kinesin heavy chain; mo 99.9 5.2E-27 1.8E-31 221.9 10.5 109 768-876 1-115 (117)
34 2kin_B Kinesin; motor protein, 99.9 1.2E-27 4E-32 219.7 5.5 82 765-846 2-84 (100)
35 1p2x_A RNG2 protein, RAS GTPas 99.9 1.8E-26 6.1E-31 229.8 10.9 110 23-136 7-120 (159)
36 1h67_A Calponin alpha; cytoske 99.9 6.2E-27 2.1E-31 218.9 6.5 101 28-135 4-108 (108)
37 1wyp_A Calponin 1; CH domain, 99.9 2.5E-26 8.4E-31 223.2 8.3 107 27-141 17-127 (136)
38 1wyn_A Calponin-2; CH domain, 99.9 9E-26 3.1E-30 221.7 10.8 103 28-137 18-124 (146)
39 1wyr_A RHO guanine nucleotide 99.9 6.8E-26 2.3E-30 215.8 9.2 107 28-134 7-116 (121)
40 1p5s_A RAS GTPase-activating-l 99.9 5.8E-25 2E-29 226.7 10.1 106 27-136 55-164 (203)
41 2rr8_A Iqgap1 protein; F-actin 99.9 1.1E-24 3.7E-29 222.8 11.0 107 26-136 24-143 (190)
42 3i6x_A P195, RAS GTPase-activa 99.9 2.1E-24 7.1E-29 220.8 10.9 108 26-137 46-166 (193)
43 3ky9_A Proto-oncogene VAV; cal 99.7 1.6E-18 5.4E-23 205.3 9.9 103 31-134 9-124 (587)
44 2yrn_A Neuron navigator 2 isof 99.5 6.3E-14 2.2E-18 134.8 7.4 107 25-133 16-124 (129)
45 1wyo_A Protein EB3, microtubul 99.3 1.1E-11 3.7E-16 122.2 13.2 113 13-137 12-127 (159)
46 2qjz_A Microtubule-associated 99.3 8.2E-12 2.8E-16 118.6 9.2 100 29-136 7-109 (123)
47 1aoa_A T-fimbrin; actin-bindin 99.2 4.7E-11 1.6E-15 128.7 9.4 115 18-132 15-138 (275)
48 1pxy_A Fimbrin-like protein; c 99.1 7.7E-11 2.6E-15 137.3 8.6 106 27-132 7-122 (506)
49 1rt8_A Fimbrin; filamentous ac 99.0 4E-10 1.4E-14 131.5 8.4 108 26-133 11-132 (513)
50 1wku_A Alpha-actinin 3; calpon 98.9 6.6E-10 2.3E-14 118.5 6.2 106 24-134 24-131 (254)
51 2wa7_A Filamin-B; disease muta 98.9 1.8E-09 6E-14 114.6 6.1 105 26-134 19-126 (245)
52 1dxx_A Dystrophin; structural 98.7 6.9E-09 2.4E-13 110.1 5.2 107 20-131 9-117 (246)
53 1sh5_A Plectin 1, PLTN, PCN; a 98.7 1.5E-08 5.3E-13 107.2 7.2 110 23-134 8-120 (245)
54 4etp_B Spindle POLE BODY-assoc 98.6 7.6E-07 2.6E-11 95.8 18.0 292 437-820 10-310 (333)
55 3f7p_A Plectin-1; plakin, hemi 98.6 6.2E-08 2.1E-12 105.3 7.0 110 19-134 65-176 (296)
56 1sjj_A Actinin; 3-helix bundle 98.5 2.9E-06 1E-10 104.4 22.0 103 26-133 7-111 (863)
57 1rt8_A Fimbrin; filamentous ac 98.5 1.7E-07 6E-12 109.3 9.0 100 27-132 285-393 (513)
58 3hoc_A Filamin-A; calponin hom 98.3 5.2E-07 1.8E-11 97.0 6.1 103 28-134 48-153 (272)
59 2vzc_A Alpha-parvin; membrane, 98.2 1.2E-06 4E-11 84.4 5.3 106 23-132 18-127 (131)
60 1pxy_A Fimbrin-like protein; c 97.8 3.2E-05 1.1E-09 90.0 8.1 100 24-129 273-377 (506)
61 4b7l_A Filamin-B; structural p 97.3 0.00021 7.3E-09 79.3 6.7 103 28-134 18-123 (347)
62 2r8u_A Microtubule-associated 97.2 0.0007 2.4E-08 72.0 9.0 102 28-137 16-120 (268)
63 1wjo_A T-plastin; CH domain, a 97.2 0.00019 6.4E-09 68.3 4.1 98 29-128 9-113 (124)
64 2d87_A Smoothelin splice isofo 96.9 0.0024 8.1E-08 61.1 8.1 104 29-138 9-117 (128)
65 2d89_A EHBP1 protein; all alph 96.6 0.0036 1.2E-07 59.1 6.8 97 29-131 11-111 (119)
66 1aoa_A T-fimbrin; actin-bindin 96.5 0.0014 4.9E-08 70.3 4.3 86 29-117 170-262 (275)
67 4abo_I MAL3, microtubule integ 96.5 0.0068 2.3E-07 58.7 8.3 99 29-136 8-109 (145)
68 1bkr_A Spectrin beta chain; fi 96.4 0.0055 1.9E-07 56.9 6.8 84 28-117 4-89 (109)
69 2v71_A Nuclear distribution pr 96.3 0.62 2.1E-05 47.1 21.8 28 341-368 10-37 (189)
70 1wyq_A Spectrin beta chain, br 96.1 0.012 4.1E-07 56.1 7.8 100 29-134 9-112 (127)
71 1sjj_A Actinin; 3-helix bundle 96.0 0.51 1.8E-05 57.8 23.9 82 30-117 124-207 (863)
72 2d88_A Protein mical-3; all al 96.0 0.0029 9.8E-08 59.9 2.9 83 28-116 10-94 (121)
73 1wyl_A NEDD9 interacting prote 96.0 0.006 2.1E-07 57.2 4.8 83 28-116 8-92 (116)
74 1wku_A Alpha-actinin 3; calpon 95.8 0.015 5.1E-07 61.7 7.5 98 29-133 142-245 (254)
75 2wa7_A Filamin-B; disease muta 95.6 0.017 5.8E-07 60.9 7.3 81 29-117 145-227 (245)
76 1bhd_A Utrophin; calponin homo 95.6 0.0072 2.5E-07 56.9 3.9 84 28-117 9-94 (118)
77 2qjx_A Protein BIM1; calponin 95.6 0.047 1.6E-06 52.0 9.2 100 28-136 11-113 (127)
78 1sh5_A Plectin 1, PLTN, PCN; a 95.2 0.016 5.5E-07 60.9 5.2 83 29-117 135-219 (245)
79 1dxx_A Dystrophin; structural 94.9 0.021 7.1E-07 60.2 5.0 85 29-118 137-223 (246)
80 3hoc_A Filamin-A; calponin hom 94.5 0.051 1.8E-06 58.2 7.1 81 29-117 172-254 (272)
81 2dfs_A Myosin-5A; myosin-V, in 94.2 0.84 2.9E-05 57.7 18.1 34 346-379 933-966 (1080)
82 1i84_S Smooth muscle myosin he 93.9 0.023 7.8E-07 72.6 3.1 13 489-501 1147-1159(1184)
83 3ec2_A DNA replication protein 93.8 0.0096 3.3E-07 58.6 -0.5 51 546-596 6-56 (180)
84 1i84_S Smooth muscle myosin he 93.7 0.055 1.9E-06 69.1 6.2 7 110-116 523-529 (1184)
85 4b7l_A Filamin-B; structural p 93.7 0.09 3.1E-06 58.2 7.1 81 29-117 142-224 (347)
86 3na7_A HP0958; flagellar bioge 93.1 5.2 0.00018 42.0 19.2 34 441-474 129-162 (256)
87 2v71_A Nuclear distribution pr 92.6 9.6 0.00033 38.5 21.5 37 464-500 132-168 (189)
88 3f7p_A Plectin-1; plakin, hemi 92.4 0.11 3.6E-06 56.4 5.0 82 29-116 191-274 (296)
89 2w58_A DNAI, primosome compone 92.3 0.027 9.3E-07 56.2 0.4 51 546-596 21-72 (202)
90 3oja_B Anopheles plasmodium-re 91.9 1.1 3.8E-05 52.2 13.4 10 355-364 463-472 (597)
91 3vkg_A Dynein heavy chain, cyt 91.6 9.6 0.00033 53.2 23.4 28 805-835 2641-2668(3245)
92 4b4t_K 26S protease regulatory 91.1 1 3.4E-05 51.3 11.4 77 547-624 169-265 (428)
93 2dfs_A Myosin-5A; myosin-V, in 91.0 3.4 0.00012 52.2 17.2 15 354-368 959-973 (1080)
94 4gkp_A Spindle POLE BODY-assoc 91.0 0.33 1.1E-05 51.7 6.8 266 490-841 3-272 (275)
95 3vkg_A Dynein heavy chain, cyt 90.7 13 0.00045 51.9 23.4 23 111-136 1734-1757(3245)
96 2qgz_A Helicase loader, putati 90.0 0.069 2.4E-06 57.8 0.6 51 547-597 121-171 (308)
97 3ol1_A Vimentin; structural ge 89.6 2.2 7.5E-05 40.0 10.5 42 341-382 76-117 (119)
98 4b4t_M 26S protease regulatory 89.2 0.86 2.9E-05 51.9 8.8 79 546-625 177-275 (434)
99 3ol1_A Vimentin; structural ge 88.2 7.6 0.00026 36.3 13.1 32 439-470 85-116 (119)
100 3o0z_A RHO-associated protein 88.1 22 0.00075 35.2 16.8 39 432-470 92-133 (168)
101 3hnw_A Uncharacterized protein 86.5 20 0.00068 34.4 15.3 32 342-373 76-107 (138)
102 3tnu_B Keratin, type II cytosk 86.2 11 0.00037 35.5 13.2 69 389-464 41-109 (129)
103 3o0z_A RHO-associated protein 85.3 31 0.0011 34.1 19.6 68 342-409 38-108 (168)
104 3tnu_A Keratin, type I cytoske 84.6 10 0.00034 35.9 12.1 70 388-464 42-111 (131)
105 2ee7_A Sperm flagellar protein 84.3 1.6 5.3E-05 41.6 6.2 100 19-125 7-114 (127)
106 3ghg_A Fibrinogen alpha chain; 83.8 20 0.0007 41.1 15.9 24 377-400 103-126 (562)
107 3na7_A HP0958; flagellar bioge 83.2 47 0.0016 34.6 21.5 29 439-467 134-162 (256)
108 2bjv_A PSP operon transcriptio 83.1 0.29 1E-05 50.9 0.7 44 547-595 3-46 (265)
109 1deq_A Fibrinogen (alpha chain 82.6 21 0.00071 39.5 14.9 31 254-286 45-75 (390)
110 4b4t_J 26S protease regulatory 82.3 6.1 0.00021 44.5 11.1 78 547-625 145-242 (405)
111 3bos_A Putative DNA replicatio 81.9 0.35 1.2E-05 48.5 0.8 46 547-596 25-70 (242)
112 4b4t_L 26S protease subunit RP 80.6 4.4 0.00015 46.1 9.2 78 547-625 178-275 (437)
113 2eqb_B RAB guanine nucleotide 80.2 30 0.001 31.3 12.5 25 374-398 66-90 (97)
114 1jbk_A CLPB protein; beta barr 79.9 0.6 2.1E-05 44.6 1.6 31 566-596 31-61 (195)
115 3te6_A Regulatory protein SIR3 79.8 0.49 1.7E-05 51.7 1.0 30 566-595 32-62 (318)
116 1l8q_A Chromosomal replication 79.8 0.55 1.9E-05 50.4 1.4 48 546-596 7-55 (324)
117 1ez3_A Syntaxin-1A; three heli 79.7 37 0.0013 31.1 16.8 69 341-410 5-73 (127)
118 1g8p_A Magnesium-chelatase 38 78.4 0.56 1.9E-05 50.4 0.9 44 545-595 19-62 (350)
119 2r62_A Cell division protease 78.4 0.65 2.2E-05 48.2 1.4 50 546-595 7-61 (268)
120 1d2n_A N-ethylmaleimide-sensit 78.2 0.66 2.2E-05 48.5 1.4 27 569-595 52-81 (272)
121 2p65_A Hypothetical protein PF 78.0 0.66 2.3E-05 44.4 1.3 30 567-596 32-61 (187)
122 3oja_A Leucine-rich immune mol 77.8 37 0.0013 38.4 16.0 24 435-458 440-463 (487)
123 1f5n_A Interferon-induced guan 77.8 22 0.00075 41.9 14.3 21 360-380 513-533 (592)
124 3ghg_A Fibrinogen alpha chain; 77.7 24 0.00084 40.5 13.8 27 347-373 56-82 (562)
125 1deq_A Fibrinogen (alpha chain 77.7 40 0.0014 37.3 15.1 17 355-371 67-83 (390)
126 3tnu_A Keratin, type I cytoske 77.0 12 0.00041 35.4 9.7 38 370-407 63-100 (131)
127 3tnu_B Keratin, type II cytosk 76.7 16 0.00056 34.3 10.6 37 371-407 62-98 (129)
128 3uk6_A RUVB-like 2; hexameric 75.7 0.99 3.4E-05 48.9 2.0 47 546-596 40-88 (368)
129 1qde_A EIF4A, translation init 74.7 1.1 3.9E-05 44.8 2.0 25 568-594 43-67 (224)
130 2kjq_A DNAA-related protein; s 74.1 0.57 1.9E-05 45.1 -0.4 18 579-596 37-54 (149)
131 1ixz_A ATP-dependent metallopr 74.0 0.7 2.4E-05 47.7 0.2 51 546-596 12-67 (254)
132 1vec_A ATP-dependent RNA helic 73.1 1.5 5E-05 43.3 2.3 26 568-595 32-57 (206)
133 2gxq_A Heat resistant RNA depe 72.9 1.3 4.5E-05 43.6 1.9 26 568-595 30-55 (207)
134 2z4s_A Chromosomal replication 72.7 1.1 3.7E-05 50.9 1.4 49 545-596 100-148 (440)
135 2fxo_A Myosin heavy chain, car 72.4 64 0.0022 30.2 14.8 26 384-409 76-101 (129)
136 3bor_A Human initiation factor 72.1 1.1 3.6E-05 45.9 1.0 26 568-595 59-84 (237)
137 2v1u_A Cell division control p 71.8 0.68 2.3E-05 50.0 -0.5 38 559-596 24-62 (387)
138 2qz4_A Paraplegin; AAA+, SPG7, 71.5 1.8 6.2E-05 44.3 2.6 20 576-595 37-56 (262)
139 3syl_A Protein CBBX; photosynt 71.5 1.7 5.8E-05 45.8 2.5 20 576-595 65-84 (309)
140 3t15_A Ribulose bisphosphate c 70.4 1.3 4.5E-05 47.2 1.3 17 579-595 37-53 (293)
141 3dkp_A Probable ATP-dependent 70.4 1.6 5.5E-05 44.5 1.9 26 568-595 58-83 (245)
142 3cf0_A Transitional endoplasmi 70.3 0.97 3.3E-05 48.3 0.3 49 547-595 12-66 (301)
143 1fnn_A CDC6P, cell division co 69.8 1.4 4.8E-05 47.7 1.4 38 558-595 21-61 (389)
144 2c9o_A RUVB-like 1; hexameric 68.9 2.4 8.2E-05 48.1 3.1 46 546-595 33-80 (456)
145 2pl3_A Probable ATP-dependent 67.9 2 6.7E-05 43.6 1.9 26 568-595 54-79 (236)
146 3iuy_A Probable ATP-dependent 67.6 2 6.7E-05 43.3 1.9 26 568-595 49-74 (228)
147 3ly5_A ATP-dependent RNA helic 66.9 1.7 5.6E-05 45.4 1.2 26 568-595 83-108 (262)
148 1iy2_A ATP-dependent metallopr 66.7 1.2 4.2E-05 46.7 0.1 51 546-596 36-91 (278)
149 3h4m_A Proteasome-activating n 66.6 1.7 5.9E-05 45.3 1.2 50 546-595 13-68 (285)
150 1p9r_A General secretion pathw 66.5 2.1 7.2E-05 48.4 2.0 29 568-596 157-185 (418)
151 3b6e_A Interferon-induced heli 66.5 1.2 4.2E-05 43.9 0.1 26 569-596 41-66 (216)
152 1sxj_C Activator 1 40 kDa subu 66.5 1.6 5.5E-05 47.2 1.0 41 549-596 24-64 (340)
153 1t6n_A Probable ATP-dependent 66.2 2.2 7.6E-05 42.6 1.9 27 568-596 43-69 (220)
154 1lv7_A FTSH; alpha/beta domain 66.0 2.4 8E-05 43.7 2.1 46 546-595 8-62 (257)
155 2ocy_A RAB guanine nucleotide 65.7 1E+02 0.0035 30.0 16.2 28 373-400 97-124 (154)
156 1wrb_A DJVLGB; RNA helicase, D 65.3 2.4 8.1E-05 43.5 2.0 26 568-595 52-77 (253)
157 1m1j_B Fibrinogen beta chain; 65.0 1.2E+02 0.0041 34.6 15.9 18 437-454 168-185 (464)
158 2chg_A Replication factor C sm 64.9 2.3 7.8E-05 41.5 1.7 21 575-595 35-55 (226)
159 3oja_A Leucine-rich immune mol 64.7 1.8E+02 0.0063 32.6 17.8 12 474-485 465-476 (487)
160 3co5_A Putative two-component 64.7 2.7 9.4E-05 39.5 2.2 35 562-597 12-46 (143)
161 3jvv_A Twitching mobility prot 64.2 2.1 7.3E-05 47.3 1.5 28 569-596 114-141 (356)
162 2qby_B CDC6 homolog 3, cell di 63.9 2.5 8.7E-05 45.7 2.0 38 558-595 24-62 (384)
163 4b4t_I 26S protease regulatory 63.6 12 0.00041 42.5 7.4 78 547-625 179-276 (437)
164 3fmo_B ATP-dependent RNA helic 63.5 2.4 8.3E-05 45.2 1.7 28 568-595 121-148 (300)
165 1gk4_A Vimentin; intermediate 63.3 49 0.0017 28.8 9.8 19 376-394 36-54 (84)
166 3i00_A HIP-I, huntingtin-inter 63.1 34 0.0012 32.0 9.2 41 351-391 18-58 (120)
167 3pfi_A Holliday junction ATP-d 63.0 3.3 0.00011 44.3 2.6 44 548-595 27-72 (338)
168 3eiq_A Eukaryotic initiation f 62.7 3.1 0.0001 45.4 2.4 26 568-595 69-94 (414)
169 3fe2_A Probable ATP-dependent 62.7 2.7 9.2E-05 42.9 1.8 26 568-595 58-83 (242)
170 2oxc_A Probable ATP-dependent 62.5 2.9 9.8E-05 42.4 2.0 26 568-595 53-78 (230)
171 3d8b_A Fidgetin-like protein 1 62.3 1.3 4.3E-05 48.7 -0.8 20 576-595 115-134 (357)
172 3mq9_A Bone marrow stromal ant 62.0 74 0.0025 35.7 13.8 27 382-408 395-421 (471)
173 1deb_A APC protein, adenomatou 61.9 26 0.00089 27.8 6.7 40 344-387 6-45 (54)
174 3pvs_A Replication-associated 61.8 2.8 9.5E-05 47.7 1.9 38 558-595 30-67 (447)
175 3ber_A Probable ATP-dependent 61.5 3 0.0001 43.0 1.9 26 568-595 72-97 (249)
176 3b9p_A CG5977-PA, isoform A; A 61.5 1.6 5.3E-05 46.0 -0.3 50 546-595 17-71 (297)
177 3llm_A ATP-dependent RNA helic 61.3 2.7 9.4E-05 42.8 1.6 27 567-595 67-93 (235)
178 1q0u_A Bstdead; DEAD protein, 60.6 2.2 7.4E-05 42.8 0.6 26 568-595 33-58 (219)
179 2ocy_A RAB guanine nucleotide 60.5 1.3E+02 0.0044 29.4 16.8 25 343-367 46-70 (154)
180 2x8a_A Nuclear valosin-contain 59.9 1.3 4.3E-05 47.0 -1.3 49 547-595 7-61 (274)
181 3n70_A Transport activator; si 59.1 4.3 0.00015 38.2 2.4 20 576-595 22-41 (145)
182 1hqc_A RUVB; extended AAA-ATPa 58.9 4.4 0.00015 42.8 2.7 44 548-595 10-55 (324)
183 1njg_A DNA polymerase III subu 58.3 3.6 0.00012 40.4 1.8 18 579-596 46-63 (250)
184 1w5s_A Origin recognition comp 58.1 3.7 0.00013 44.8 2.0 31 565-595 33-69 (412)
185 4b4t_H 26S protease regulatory 58.1 3 0.0001 47.8 1.3 78 547-625 206-303 (467)
186 4fcw_A Chaperone protein CLPB; 58.0 4.4 0.00015 42.6 2.5 38 558-595 21-64 (311)
187 3vfd_A Spastin; ATPase, microt 58.0 3.3 0.00011 45.8 1.6 50 546-595 111-165 (389)
188 1gvn_B Zeta; postsegregational 57.5 6.8 0.00023 41.6 3.9 38 558-595 8-50 (287)
189 1in4_A RUVB, holliday junction 57.4 3.8 0.00013 44.4 1.9 44 548-595 23-68 (334)
190 2e7s_A RAB guanine nucleotide 57.3 34 0.0012 32.7 8.1 40 361-400 73-112 (135)
191 3fht_A ATP-dependent RNA helic 56.7 4.1 0.00014 44.2 2.0 28 568-595 54-81 (412)
192 2j0s_A ATP-dependent RNA helic 56.6 3.7 0.00013 44.8 1.7 26 568-595 66-91 (410)
193 2v66_B Nuclear distribution pr 56.6 1.2E+02 0.0042 27.9 15.5 7 479-485 84-90 (111)
194 1iqp_A RFCS; clamp loader, ext 56.6 4.5 0.00016 42.5 2.3 35 559-596 30-64 (327)
195 1xwi_A SKD1 protein; VPS4B, AA 56.6 2 6.9E-05 46.4 -0.5 49 547-595 9-62 (322)
196 1x79_B RAB GTPase binding effe 56.6 1.2E+02 0.0043 27.9 12.6 35 440-474 48-82 (112)
197 2qby_A CDC6 homolog 1, cell di 56.4 1.8 6.3E-05 46.5 -0.8 20 576-595 43-62 (386)
198 2eqb_B RAB guanine nucleotide 56.2 1.2E+02 0.0039 27.5 12.1 46 446-497 49-94 (97)
199 3fmp_B ATP-dependent RNA helic 56.1 3.9 0.00013 46.1 1.8 27 568-594 121-147 (479)
200 2efr_A General control protein 56.0 1.5E+02 0.0052 28.8 20.0 42 435-476 96-137 (155)
201 3u61_B DNA polymerase accessor 55.9 4.2 0.00014 43.2 2.0 19 578-596 48-66 (324)
202 3r2p_A Apolipoprotein A-I; amp 55.5 1.6E+02 0.0056 29.0 14.1 10 490-499 174-183 (185)
203 1tue_A Replication protein E1; 55.3 3.2 0.00011 42.7 0.8 29 569-597 47-77 (212)
204 1wix_A HOOK homolog 1, RSGI RU 55.0 12 0.0004 36.9 4.8 67 30-103 12-84 (164)
205 3swk_A Vimentin; cytoskeleton, 54.7 47 0.0016 29.2 8.1 31 344-374 10-40 (86)
206 1ofh_A ATP-dependent HSL prote 54.3 4.5 0.00016 42.2 1.8 18 578-595 50-67 (310)
207 3pey_A ATP-dependent RNA helic 54.2 4.7 0.00016 43.3 2.0 28 568-595 34-61 (395)
208 1x79_B RAB GTPase binding effe 54.2 1.4E+02 0.0047 27.7 11.5 18 438-455 78-95 (112)
209 2v66_B Nuclear distribution pr 53.6 1.4E+02 0.0047 27.6 15.5 32 462-493 77-108 (111)
210 1u0j_A DNA replication protein 53.4 6.1 0.00021 42.0 2.6 30 567-596 90-122 (267)
211 3s84_A Apolipoprotein A-IV; fo 53.2 2.3E+02 0.0078 30.0 21.0 12 488-499 233-244 (273)
212 2z0m_A 337AA long hypothetical 53.2 4.6 0.00016 42.4 1.7 27 568-596 23-49 (337)
213 3vem_A Helicase protein MOM1; 53.0 68 0.0023 29.7 9.1 11 317-327 36-46 (115)
214 2eyu_A Twitching motility prot 52.9 3.8 0.00013 43.1 1.0 20 577-596 24-43 (261)
215 3mov_A Lamin-B1; LMNB1, B-type 52.7 97 0.0033 27.7 10.0 34 431-464 38-71 (95)
216 1f5n_A Interferon-induced guan 52.6 3.4E+02 0.012 31.8 24.7 15 487-501 568-582 (592)
217 1s2m_A Putative ATP-dependent 52.1 4.7 0.00016 43.8 1.6 26 568-595 50-75 (400)
218 2i4i_A ATP-dependent RNA helic 51.6 5 0.00017 43.8 1.7 26 568-595 44-69 (417)
219 3swk_A Vimentin; cytoskeleton, 51.3 21 0.00073 31.4 5.4 27 342-368 57-83 (86)
220 2qp9_X Vacuolar protein sortin 50.8 3.6 0.00012 45.1 0.4 49 547-595 48-101 (355)
221 1x8y_A Lamin A/C; structural p 50.8 1.2E+02 0.0042 26.4 10.2 36 429-464 27-62 (86)
222 2fz4_A DNA repair protein RAD2 50.6 4.7 0.00016 41.5 1.2 26 569-596 101-126 (237)
223 3u59_A Tropomyosin beta chain; 50.5 1.4E+02 0.0046 26.8 10.8 8 399-406 87-94 (101)
224 3mq9_A Bone marrow stromal ant 50.5 3E+02 0.01 30.6 16.7 58 342-410 412-469 (471)
225 1jr3_A DNA polymerase III subu 50.2 6.5 0.00022 42.2 2.3 35 559-596 21-56 (373)
226 3cl3_D NF-kappa-B essential mo 49.9 39 0.0013 31.9 7.0 33 443-475 75-107 (130)
227 3cvf_A Homer-3, homer protein 49.5 82 0.0028 27.4 8.6 16 389-404 25-40 (79)
228 3h1t_A Type I site-specific re 49.5 5.6 0.00019 46.3 1.7 25 571-596 192-216 (590)
229 2k48_A Nucleoprotein; viral pr 49.5 68 0.0023 29.2 8.3 28 346-373 40-67 (107)
230 3oiy_A Reverse gyrase helicase 49.3 6 0.0002 43.5 1.9 26 568-595 28-53 (414)
231 1sxj_D Activator 1 41 kDa subu 47.5 5.4 0.00018 42.6 1.1 29 568-596 48-76 (353)
232 4dzn_A Coiled-coil peptide CC- 47.5 35 0.0012 23.9 4.7 27 851-877 3-29 (33)
233 1rif_A DAR protein, DNA helica 47.4 4.4 0.00015 42.3 0.4 27 568-596 120-146 (282)
234 1qvr_A CLPB protein; coiled co 47.0 4.2 0.00014 49.9 0.1 43 548-597 168-210 (854)
235 2chq_A Replication factor C sm 46.7 3.1 0.0001 43.7 -1.0 21 575-595 35-55 (319)
236 3q8t_A Beclin-1; autophagy, AT 46.6 1.6E+02 0.0055 26.3 13.9 59 312-377 3-61 (96)
237 1ojl_A Transcriptional regulat 46.5 7.2 0.00025 41.7 1.9 32 563-595 11-42 (304)
238 2oap_1 GSPE-2, type II secreti 46.4 6.4 0.00022 45.6 1.5 21 574-596 258-278 (511)
239 3fho_A ATP-dependent RNA helic 46.2 7.1 0.00024 44.7 1.9 27 569-595 149-175 (508)
240 1um8_A ATP-dependent CLP prote 45.8 4.1 0.00014 44.6 -0.2 18 578-595 72-89 (376)
241 3hws_A ATP-dependent CLP prote 45.8 5.8 0.0002 43.2 1.0 18 578-595 51-68 (363)
242 2v4h_A NF-kappa-B essential mo 45.7 1.7E+02 0.0058 26.9 10.4 25 384-408 83-107 (110)
243 2ewv_A Twitching motility prot 45.7 4.6 0.00016 44.7 0.2 26 570-595 128-153 (372)
244 3i5x_A ATP-dependent RNA helic 45.7 8.2 0.00028 44.3 2.3 27 568-594 101-127 (563)
245 4b3f_X DNA-binding protein smu 45.7 6.8 0.00023 46.4 1.6 29 568-597 196-224 (646)
246 3eie_A Vacuolar protein sortin 45.4 6.7 0.00023 42.0 1.4 49 547-595 15-68 (322)
247 1xti_A Probable ATP-dependent 45.1 6.7 0.00023 42.3 1.4 26 568-595 37-62 (391)
248 1m1j_A Fibrinogen alpha subuni 44.7 4E+02 0.014 30.3 15.7 18 352-369 62-79 (491)
249 3s84_A Apolipoprotein A-IV; fo 44.2 3.1E+02 0.011 28.9 26.2 24 261-284 16-39 (273)
250 3cve_A Homer protein homolog 1 43.9 1.5E+02 0.0052 25.3 9.4 16 389-404 19-34 (72)
251 1fuu_A Yeast initiation factor 43.7 5.9 0.0002 42.7 0.6 26 568-595 50-75 (394)
252 2v1x_A ATP-dependent DNA helic 43.5 10 0.00035 44.6 2.7 27 567-595 50-76 (591)
253 4a2p_A RIG-I, retinoic acid in 43.4 8.5 0.00029 43.6 1.9 26 568-595 14-39 (556)
254 3a2a_A Voltage-gated hydrogen 43.0 35 0.0012 27.5 4.8 34 854-887 22-55 (58)
255 2zan_A Vacuolar protein sortin 42.7 3.7 0.00013 46.5 -1.2 17 579-595 168-184 (444)
256 3iox_A AGI/II, PA; alpha helix 42.3 4.4E+02 0.015 30.2 15.5 9 385-393 28-36 (497)
257 3hu3_A Transitional endoplasmi 42.1 7.4 0.00025 44.8 1.2 49 547-595 201-255 (489)
258 2db3_A ATP-dependent RNA helic 41.9 11 0.00036 42.2 2.4 26 568-595 85-110 (434)
259 2jee_A YIIU; FTSZ, septum, coi 41.7 1.8E+02 0.0061 25.4 11.1 22 389-410 11-32 (81)
260 1sxj_E Activator 1 40 kDa subu 41.6 3.6 0.00012 44.2 -1.5 15 581-595 39-53 (354)
261 2r44_A Uncharacterized protein 41.6 6 0.0002 42.3 0.3 24 571-596 41-64 (331)
262 3pxi_A Negative regulator of g 41.3 10 0.00034 45.8 2.2 38 558-595 495-538 (758)
263 1hv8_A Putative ATP-dependent 41.2 8.3 0.00028 40.8 1.3 27 568-595 35-61 (367)
264 1n0w_A DNA repair protein RAD5 41.2 8.4 0.00029 38.6 1.3 29 568-596 11-42 (243)
265 3tbk_A RIG-I helicase domain; 41.1 9.7 0.00033 43.0 1.9 26 568-595 11-36 (555)
266 1fio_A SSO1 protein; four heli 41.1 2.6E+02 0.009 27.2 15.1 71 342-412 3-74 (196)
267 2jlq_A Serine protease subunit 40.5 7.1 0.00024 44.1 0.7 24 570-594 12-35 (451)
268 1w36_D RECD, exodeoxyribonucle 40.2 8.9 0.0003 45.3 1.5 26 569-596 157-182 (608)
269 3cve_A Homer protein homolog 1 40.1 1.8E+02 0.006 24.9 9.1 36 372-407 20-55 (72)
270 3b85_A Phosphate starvation-in 40.0 10 0.00035 38.4 1.7 26 568-595 14-39 (208)
271 1m1j_B Fibrinogen beta chain; 40.0 2.8E+02 0.0097 31.6 13.7 7 614-620 301-307 (464)
272 3e70_C DPA, signal recognition 39.7 14 0.00047 40.3 2.8 18 578-595 129-146 (328)
273 1qvr_A CLPB protein; coiled co 39.5 12 0.00041 45.9 2.6 37 559-595 563-605 (854)
274 3iox_A AGI/II, PA; alpha helix 39.5 4.9E+02 0.017 29.9 15.5 24 384-407 20-43 (497)
275 2avr_X Adhesion A; antiparalle 39.5 2.4E+02 0.0082 26.3 13.8 39 450-488 70-108 (119)
276 2p5t_B PEZT; postsegregational 39.4 19 0.00064 37.1 3.7 28 567-594 16-48 (253)
277 1r6b_X CLPA protein; AAA+, N-t 39.3 13 0.00043 44.8 2.7 38 558-595 462-505 (758)
278 1sxj_A Activator 1 95 kDa subu 39.1 6.7 0.00023 45.2 0.2 18 578-595 77-94 (516)
279 1sxj_B Activator 1 37 kDa subu 38.9 8.1 0.00028 40.4 0.8 22 574-595 38-59 (323)
280 3b9q_A Chloroplast SRP recepto 38.6 14 0.00047 39.7 2.6 17 579-595 101-117 (302)
281 3hnw_A Uncharacterized protein 38.2 2.2E+02 0.0076 27.0 10.7 16 263-278 28-43 (138)
282 1gk4_A Vimentin; intermediate 38.2 2E+02 0.0067 24.9 11.7 33 432-464 28-60 (84)
283 4gl2_A Interferon-induced heli 38.1 11 0.00039 44.3 2.0 27 568-596 14-40 (699)
284 3sqw_A ATP-dependent RNA helic 37.1 13 0.00046 43.0 2.3 27 568-594 50-76 (579)
285 2a01_A Apolipoprotein A-I; fou 37.1 3.6E+02 0.012 27.7 16.5 24 263-286 62-85 (243)
286 4gp7_A Metallophosphoesterase; 37.0 7.3 0.00025 37.7 0.0 17 580-596 11-27 (171)
287 2ic6_A Nucleocapsid protein; h 37.0 1.5E+02 0.0051 25.7 8.1 28 346-373 10-37 (78)
288 3pxg_A Negative regulator of g 36.9 12 0.0004 42.6 1.8 31 567-597 190-220 (468)
289 2ce7_A Cell division protein F 36.8 13 0.00045 42.6 2.1 46 546-595 12-66 (476)
290 3lw7_A Adenylate kinase relate 36.7 9.1 0.00031 35.8 0.7 16 580-595 3-18 (179)
291 2nrj_A HBL B protein; enteroto 36.4 2.9E+02 0.01 30.1 12.8 31 425-455 259-289 (346)
292 2w83_C C-JUN-amino-terminal ki 36.4 94 0.0032 26.8 6.7 20 348-367 37-56 (77)
293 2gza_A Type IV secretion syste 36.4 9.3 0.00032 42.0 0.8 23 572-596 171-193 (361)
294 3t98_B Nucleoporin NUP58/NUP45 36.4 2.3E+02 0.0079 25.2 10.7 22 379-400 14-35 (93)
295 3mov_A Lamin-B1; LMNB1, B-type 36.2 63 0.0022 28.9 6.1 13 379-391 50-62 (95)
296 2cvh_A DNA repair and recombin 36.0 11 0.00039 37.0 1.3 29 568-596 7-38 (220)
297 2w0m_A SSO2452; RECA, SSPF, un 35.8 10 0.00035 37.4 0.9 29 568-596 10-41 (235)
298 3t98_B Nucleoporin NUP58/NUP45 35.7 1.9E+02 0.0065 25.8 9.1 72 390-461 11-82 (93)
299 2fwr_A DNA repair protein RAD2 35.7 11 0.00038 42.1 1.3 27 568-596 100-126 (472)
300 3tul_A Cell invasion protein S 35.6 87 0.003 30.2 7.1 26 468-493 89-114 (158)
301 2dhr_A FTSH; AAA+ protein, hex 35.3 16 0.00053 42.3 2.4 46 546-595 27-81 (499)
302 4ag6_A VIRB4 ATPase, type IV s 35.0 8.1 0.00028 42.5 0.0 19 578-596 35-53 (392)
303 3lfu_A DNA helicase II; SF1 he 34.4 11 0.00039 44.0 1.1 26 572-597 16-41 (647)
304 3upu_A ATP-dependent DNA helic 34.2 11 0.00037 42.7 0.8 37 556-596 27-63 (459)
305 4a74_A DNA repair and recombin 34.2 13 0.00044 36.8 1.4 28 568-595 12-42 (231)
306 1m1j_A Fibrinogen alpha subuni 34.1 4.1E+02 0.014 30.2 13.3 28 373-400 100-127 (491)
307 1lkx_A Myosin IE heavy chain; 34.1 15 0.00053 44.1 2.2 34 562-595 77-111 (697)
308 2gk6_A Regulator of nonsense t 34.0 13 0.00045 43.9 1.6 28 568-597 187-214 (624)
309 1go4_E MAD1 (mitotic arrest de 33.9 97 0.0033 28.1 6.9 71 342-412 13-96 (100)
310 2ykg_A Probable ATP-dependent 33.7 17 0.00057 42.9 2.4 26 568-595 20-45 (696)
311 3tr0_A Guanylate kinase, GMP k 33.6 8.9 0.00031 37.5 0.0 16 580-595 9-24 (205)
312 2qnr_A Septin-2, protein NEDD5 33.5 9 0.00031 40.9 0.1 24 572-595 12-35 (301)
313 3efg_A Protein SLYX homolog; x 33.5 92 0.0031 26.9 6.4 20 388-407 11-30 (78)
314 1wp9_A ATP-dependent RNA helic 33.2 12 0.00042 40.8 1.1 27 568-597 16-42 (494)
315 1w9i_A Myosin II heavy chain; 32.9 16 0.00056 44.3 2.2 21 575-595 169-189 (770)
316 3mq7_A Bone marrow stromal ant 32.5 3.1E+02 0.011 25.5 10.8 68 341-412 39-106 (121)
317 2v26_A Myosin VI; calmodulin-b 32.5 17 0.00058 44.4 2.2 34 562-595 123-157 (784)
318 3tau_A Guanylate kinase, GMP k 32.4 9.6 0.00033 38.0 0.0 16 580-595 10-25 (208)
319 1c4o_A DNA nucleotide excision 32.4 17 0.00058 43.3 2.2 46 547-597 2-47 (664)
320 2qag_C Septin-7; cell cycle, c 32.2 9 0.00031 43.2 -0.2 23 573-595 26-48 (418)
321 2og2_A Putative signal recogni 32.2 21 0.0007 39.5 2.7 17 579-595 158-174 (359)
322 1oyw_A RECQ helicase, ATP-depe 32.1 11 0.00037 43.5 0.4 26 568-595 32-57 (523)
323 1s94_A S-syntaxin; three helix 32.1 3.4E+02 0.012 26.3 11.4 70 341-411 36-105 (180)
324 1e9r_A Conjugal transfer prote 31.8 8.9 0.0003 42.8 -0.4 18 578-595 53-70 (437)
325 3kl4_A SRP54, signal recogniti 31.8 21 0.00073 40.4 2.8 18 579-596 98-115 (433)
326 1kgd_A CASK, peripheral plasma 31.5 10 0.00035 36.9 0.1 16 580-595 7-22 (180)
327 2b9c_A Striated-muscle alpha t 31.5 3.6E+02 0.012 25.9 13.9 20 391-410 101-120 (147)
328 3a00_A Guanylate kinase, GMP k 31.5 10 0.00035 37.0 0.0 15 581-595 4-18 (186)
329 1g8x_A Myosin II heavy chain f 31.0 17 0.0006 45.5 2.0 34 562-595 155-189 (1010)
330 1kk8_A Myosin heavy chain, str 30.9 17 0.00059 44.6 1.9 34 562-595 152-186 (837)
331 3bas_A Myosin heavy chain, str 30.9 1.2E+02 0.0042 26.5 7.0 12 387-398 73-84 (89)
332 2ycu_A Non muscle myosin 2C, a 30.8 19 0.00064 45.2 2.3 34 562-595 129-163 (995)
333 3trf_A Shikimate kinase, SK; a 30.7 13 0.00044 35.8 0.7 15 580-594 7-21 (185)
334 1ly1_A Polynucleotide kinase; 30.7 13 0.00044 35.2 0.7 16 579-594 3-18 (181)
335 4db1_A Myosin-7; S1DC, cardiac 30.6 19 0.00065 43.9 2.2 34 562-595 154-188 (783)
336 1w7j_A Myosin VA; motor protei 30.6 19 0.00065 44.0 2.2 34 562-595 139-173 (795)
337 2r8r_A Sensor protein; KDPD, P 30.6 10 0.00035 39.4 -0.1 20 578-597 6-25 (228)
338 1rz3_A Hypothetical protein rb 30.5 19 0.00066 35.5 1.9 29 567-595 8-39 (201)
339 1gs9_A Apolipoprotein E, APOE4 30.5 1.8E+02 0.0063 28.4 9.0 16 394-409 69-84 (165)
340 1lvg_A Guanylate kinase, GMP k 29.8 11 0.00037 37.5 -0.1 16 580-595 6-21 (198)
341 1zp6_A Hypothetical protein AT 29.6 11 0.00037 36.5 -0.1 17 579-595 10-26 (191)
342 4a4z_A Antiviral helicase SKI2 29.6 19 0.00065 45.1 2.0 25 568-594 46-70 (997)
343 2ic9_A Nucleocapsid protein; h 29.6 1.8E+02 0.006 26.2 7.6 26 348-373 12-37 (96)
344 3dm5_A SRP54, signal recogniti 29.3 23 0.00078 40.3 2.5 20 578-597 100-119 (443)
345 1qhx_A CPT, protein (chloramph 29.2 14 0.00049 35.2 0.7 17 579-595 4-20 (178)
346 2px0_A Flagellar biosynthesis 29.2 14 0.00049 39.4 0.7 17 580-596 107-123 (296)
347 3a7p_A Autophagy protein 16; c 29.1 4E+02 0.014 25.8 11.7 24 439-462 105-128 (152)
348 1ic2_A Tropomyosin alpha chain 29.1 2.7E+02 0.0092 23.8 10.3 20 389-408 46-65 (81)
349 3iij_A Coilin-interacting nucl 29.0 14 0.00047 35.6 0.5 17 579-595 12-28 (180)
350 1rj9_A FTSY, signal recognitio 29.0 14 0.00046 39.8 0.5 16 580-595 104-119 (304)
351 3sop_A Neuronal-specific septi 28.9 12 0.0004 39.5 -0.0 19 577-595 1-19 (270)
352 2oqq_A Transcription factor HY 28.8 85 0.0029 24.0 4.6 24 389-412 8-31 (42)
353 4a2q_A RIG-I, retinoic acid in 28.8 20 0.00067 43.5 1.9 27 568-596 255-281 (797)
354 3c8u_A Fructokinase; YP_612366 28.7 19 0.00064 35.8 1.4 19 577-595 21-39 (208)
355 1ye8_A Protein THEP1, hypothet 28.5 12 0.00042 36.7 0.1 15 581-595 3-17 (178)
356 2yhs_A FTSY, cell division pro 28.5 15 0.00052 42.5 0.8 16 580-595 295-310 (503)
357 1r6b_X CLPA protein; AAA+, N-t 28.4 16 0.00056 43.9 1.1 31 567-597 196-226 (758)
358 4anj_A Unconventional myosin-V 28.4 22 0.00074 44.8 2.2 34 562-595 127-161 (1052)
359 3ajw_A Flagellar FLIJ protein; 28.3 3.6E+02 0.012 24.9 17.1 41 427-467 71-111 (150)
360 2b8t_A Thymidine kinase; deoxy 27.9 10 0.00035 39.0 -0.6 19 579-597 13-31 (223)
361 2dr3_A UPF0273 protein PH0284; 27.8 16 0.00055 36.5 0.8 26 570-595 12-40 (247)
362 2orw_A Thymidine kinase; TMTK, 27.7 9.9 0.00034 37.6 -0.8 18 580-597 5-22 (184)
363 4a2w_A RIG-I, retinoic acid in 27.7 20 0.00067 44.6 1.7 26 569-596 256-281 (936)
364 3ghg_B Fibrinogen beta chain; 27.5 7.2E+02 0.025 28.2 14.2 26 432-457 158-183 (461)
365 1t3j_A Mitofusin 1; coiled coi 27.5 2.1E+02 0.0071 25.7 7.8 16 383-398 46-61 (96)
366 1ypw_A Transitional endoplasmi 27.5 18 0.00062 44.1 1.3 51 545-595 199-255 (806)
367 2j41_A Guanylate kinase; GMP, 27.5 13 0.00045 36.2 0.0 16 580-595 8-23 (207)
368 3lnc_A Guanylate kinase, GMP k 27.3 15 0.00052 36.9 0.5 16 580-595 29-44 (231)
369 4fi5_A Nucleoprotein; structur 27.3 1.8E+02 0.006 26.9 7.4 25 349-373 30-54 (113)
370 3pxi_A Negative regulator of g 27.3 28 0.00096 41.9 2.9 31 567-597 190-220 (758)
371 1gku_B Reverse gyrase, TOP-RG; 27.2 26 0.00089 44.1 2.7 24 568-593 63-86 (1054)
372 2bdt_A BH3686; alpha-beta prot 27.1 13 0.00046 35.9 0.1 16 580-595 4-19 (189)
373 2ehv_A Hypothetical protein PH 27.0 14 0.00046 37.2 0.1 17 580-596 32-48 (251)
374 2xv5_A Lamin-A/C; structural p 27.0 2.2E+02 0.0074 24.3 7.6 47 353-400 10-56 (74)
375 3nbx_X ATPase RAVA; AAA+ ATPas 26.8 21 0.00073 41.2 1.7 28 568-597 33-60 (500)
376 3vaa_A Shikimate kinase, SK; s 26.7 17 0.00057 35.8 0.7 16 580-595 27-42 (199)
377 3s4r_A Vimentin; alpha-helix, 26.5 3.4E+02 0.011 24.0 9.7 28 341-368 16-43 (93)
378 1znw_A Guanylate kinase, GMP k 26.4 14 0.00048 36.6 0.1 21 573-595 17-37 (207)
379 3vp9_A General transcriptional 26.2 2.4E+02 0.0082 25.2 7.9 29 375-403 59-87 (92)
380 2oca_A DAR protein, ATP-depend 26.1 18 0.00062 40.9 0.9 27 569-597 121-147 (510)
381 2pt7_A CAG-ALFA; ATPase, prote 25.8 13 0.00045 40.3 -0.3 22 573-596 168-189 (330)
382 1kht_A Adenylate kinase; phosp 25.8 18 0.00063 34.5 0.8 17 579-595 4-20 (192)
383 3cf2_A TER ATPase, transitiona 25.8 25 0.00084 43.1 2.0 76 546-622 200-295 (806)
384 3i00_A HIP-I, huntingtin-inter 25.7 4.1E+02 0.014 24.7 10.2 49 352-404 12-60 (120)
385 2wjy_A Regulator of nonsense t 25.7 22 0.00075 43.5 1.6 28 568-597 363-390 (800)
386 2v6i_A RNA helicase; membrane, 25.7 20 0.00069 40.1 1.2 16 580-595 4-19 (431)
387 3ghg_C Fibrinogen gamma chain; 25.6 3.3E+02 0.011 30.6 10.9 16 429-444 97-112 (411)
388 2xzl_A ATP-dependent helicase 25.5 20 0.0007 43.7 1.2 28 568-597 367-394 (802)
389 2i3b_A HCR-ntpase, human cance 25.4 14 0.00049 36.7 -0.1 16 580-595 3-18 (189)
390 1ik9_A DNA repair protein XRCC 25.2 4.5E+02 0.015 26.7 11.1 21 348-368 146-166 (213)
391 3e1s_A Exodeoxyribonuclease V, 25.1 21 0.00072 41.8 1.2 27 569-597 197-223 (574)
392 1xx6_A Thymidine kinase; NESG, 25.0 13 0.00043 37.4 -0.6 18 580-597 10-27 (191)
393 1gm5_A RECG; helicase, replica 24.9 27 0.00091 42.6 2.1 39 554-595 368-406 (780)
394 1kag_A SKI, shikimate kinase I 24.8 18 0.00062 34.2 0.5 16 580-595 6-21 (173)
395 1m1j_C Fibrinogen gamma chain; 24.7 3.9E+02 0.013 29.9 11.3 6 614-619 231-236 (409)
396 1z6g_A Guanylate kinase; struc 24.6 15 0.00052 37.0 -0.1 15 581-595 26-40 (218)
397 1l8d_A DNA double-strand break 24.6 3.7E+02 0.013 23.8 12.1 20 438-457 79-98 (112)
398 2z83_A Helicase/nucleoside tri 24.5 22 0.00074 40.2 1.2 16 580-595 23-38 (459)
399 2qen_A Walker-type ATPase; unk 24.5 23 0.00077 37.3 1.2 17 579-595 32-48 (350)
400 1yks_A Genome polyprotein [con 24.4 22 0.00076 39.9 1.2 21 573-595 5-25 (440)
401 3kb2_A SPBC2 prophage-derived 24.3 20 0.00068 33.6 0.7 16 580-595 3-18 (173)
402 2ze6_A Isopentenyl transferase 24.2 19 0.00064 37.3 0.5 15 580-594 3-17 (253)
403 3uie_A Adenylyl-sulfate kinase 23.9 23 0.0008 34.7 1.1 19 577-595 24-42 (200)
404 2fxo_A Myosin heavy chain, car 23.9 4.4E+02 0.015 24.4 17.0 11 358-368 16-26 (129)
405 4dci_A Uncharacterized protein 23.8 4.2E+02 0.014 25.6 9.9 11 500-510 115-125 (150)
406 1j8m_F SRP54, signal recogniti 23.8 42 0.0014 35.8 3.1 17 580-596 100-116 (297)
407 1dn1_B Syntaxin 1A, syntaxin b 23.7 6.3E+02 0.022 26.2 15.7 68 342-410 29-96 (267)
408 3iv1_A Tumor susceptibility ge 23.6 3.6E+02 0.012 23.3 9.7 34 379-412 41-74 (78)
409 1uaa_A REP helicase, protein ( 23.5 21 0.00071 42.3 0.8 21 577-597 14-34 (673)
410 3kta_A Chromosome segregation 23.1 17 0.00059 34.8 -0.0 16 580-595 28-43 (182)
411 1uf9_A TT1252 protein; P-loop, 23.1 24 0.00081 34.2 1.0 21 575-595 5-25 (203)
412 2zj8_A DNA helicase, putative 23.0 17 0.00059 43.4 -0.1 21 573-595 36-56 (720)
413 2qag_A Septin-2, protein NEDD5 22.8 20 0.0007 39.2 0.5 24 572-595 31-54 (361)
414 2i1j_A Moesin; FERM, coiled-co 22.7 74 0.0025 37.3 5.2 153 277-450 299-457 (575)
415 1vma_A Cell division protein F 22.4 19 0.00064 38.8 0.1 17 580-596 106-122 (306)
416 3rc3_A ATP-dependent RNA helic 22.3 21 0.00073 42.7 0.5 20 573-594 152-171 (677)
417 3teq_A Stromal interaction mol 22.1 4.4E+02 0.015 23.8 10.0 67 343-409 16-82 (101)
418 2fna_A Conserved hypothetical 22.1 21 0.00073 37.5 0.4 20 574-595 28-47 (357)
419 1tev_A UMP-CMP kinase; ploop, 22.0 23 0.0008 33.8 0.7 17 579-595 4-20 (196)
420 2e7s_A RAB guanine nucleotide 21.9 3.2E+02 0.011 26.0 8.4 15 431-445 118-132 (135)
421 4h22_A Leucine-rich repeat fli 21.9 4E+02 0.014 24.2 8.6 17 349-365 24-40 (103)
422 2v3c_C SRP54, signal recogniti 21.9 44 0.0015 37.7 3.0 18 580-597 101-118 (432)
423 3cm0_A Adenylate kinase; ATP-b 21.8 24 0.00081 33.8 0.7 16 580-595 6-21 (186)
424 4dnd_A Syntaxin-10, SYN10; str 21.7 5E+02 0.017 24.3 11.1 31 381-411 64-94 (130)
425 2rhm_A Putative kinase; P-loop 21.6 23 0.00078 34.0 0.5 17 579-595 6-22 (193)
426 2qor_A Guanylate kinase; phosp 21.6 23 0.00078 34.9 0.5 16 580-595 14-29 (204)
427 3t5d_A Septin-7; GTP-binding p 21.4 20 0.00067 37.4 -0.0 21 575-595 5-25 (274)
428 2odv_A Plectin 1, HD1; plakin 21.4 6.7E+02 0.023 25.7 18.9 30 264-293 8-37 (235)
429 2xgj_A ATP-dependent RNA helic 21.3 28 0.00095 43.7 1.3 26 568-595 93-118 (1010)
430 3vmx_A Voltage-gated hydrogen 21.2 1.7E+02 0.0058 23.1 5.2 33 853-885 14-46 (48)
431 3l9o_A ATP-dependent RNA helic 21.1 31 0.0011 43.7 1.6 25 568-594 191-215 (1108)
432 1g6u_A Domain swapped dimer; d 21.0 2.6E+02 0.0087 21.1 5.9 26 341-366 20-45 (48)
433 1y63_A LMAJ004144AAA protein; 20.9 24 0.00082 34.2 0.5 16 580-595 12-27 (184)
434 3ra3_B P2F; coiled coil domain 20.9 78 0.0027 21.4 2.8 25 852-876 2-26 (28)
435 3etw_A Adhesin A; antiparallel 20.9 5.1E+02 0.017 24.1 14.0 16 459-474 79-94 (119)
436 1e6c_A Shikimate kinase; phosp 20.6 25 0.00085 33.2 0.5 16 580-595 4-19 (173)
437 1g6u_A Domain swapped dimer; d 20.4 2.4E+02 0.0083 21.2 5.6 20 389-408 25-44 (48)
438 2bbw_A Adenylate kinase 4, AK4 20.3 22 0.00075 36.2 0.1 17 579-595 28-44 (246)
439 1knq_A Gluconate kinase; ALFA/ 20.3 27 0.00091 33.2 0.7 17 579-595 9-25 (175)
440 2vli_A Antibiotic resistance p 20.3 29 0.001 33.0 1.0 17 579-595 6-22 (183)
441 2p6r_A Afuhel308 helicase; pro 20.2 24 0.00083 41.9 0.4 25 569-595 33-57 (702)
442 3jsv_C NF-kappa-B essential mo 20.2 3.6E+02 0.012 24.1 7.8 47 356-410 41-87 (94)
No 1
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-92 Score=795.85 Aligned_cols=356 Identities=41% Similarity=0.597 Sum_probs=295.5
Q ss_pred HHhHHHHHHHHhhhhhhhhhcCCCEEEEEecCCCCCC-CCCCCceEEEEc--c-CC--eEEecCCCCCCCCCceeEEece
Q 042277 478 AENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPG-QTKKQTTIEYIG--E-NG--ELIFGNPSKPGKDGQRMFKFNK 551 (899)
Q Consensus 478 ~~~y~~~~~e~R~l~N~iqelkGnIrV~~RVRP~~~~-E~~~~~~v~~~~--~-~~--~v~i~~p~~~~~~~~k~F~FD~ 551 (899)
.+.|......||+|||++||+||||||||||||+++. +......+.+.. + .+ .+.+..+. +....+.|.||+
T Consensus 37 ~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~F~FD~ 114 (403)
T 4etp_A 37 NEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ--NTAQVHEFKFDK 114 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECS--SSCEEEEEEESE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCC--CCcCceEEEcCE
Confidence 4556666788999999999999999999999999887 433334444321 1 11 23333222 223468899999
Q ss_pred eeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhc-cCCCeeEE
Q 042277 552 VFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQN-RRSSIMYE 630 (899)
Q Consensus 552 VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~-~~~~~~~~ 630 (899)
||+++++|++||+++.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||..+.. ....+.|.
T Consensus 115 VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~------~~Giipr~~~~lF~~i~~~~~~~~~~~ 188 (403)
T 4etp_A 115 IFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP------GDGIIPSTISHIFNWINKLKTKGWDYK 188 (403)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT------TTSHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred EECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC------CCccchhHHHHHHHHHHhhhccCceEE
Confidence 99999999999999999999999999999999999999999999995 359999999999998765 35678999
Q ss_pred EEEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCC
Q 042277 631 VAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATAL 710 (899)
Q Consensus 631 V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~ 710 (899)
|+|||+|||||+|+|||.+....... ........+..++..+|++|.|++++.|.|+++++.+|..|.++|++++|.|
T Consensus 189 v~vS~~EIYnE~i~DLL~~~~~~~~~--~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 266 (403)
T 4etp_A 189 VNAEFIEIYNENIVDLLRSDNNNKED--TSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTAS 266 (403)
T ss_dssp EEEEEEEEETTEEEETTCC----------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHH
T ss_pred EEEEEEEEecceeeEccCCccccccc--cccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccC
Confidence 99999999999999999876532110 0011223344455567899999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEeecCCCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCC---C
Q 042277 711 NERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSP---H 787 (899)
Q Consensus 711 N~~SSRSH~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~---h 787 (899)
|..|||||+||+|+|.+.+...+....|+|+|||||||||++++++.|+|++|+.+||+||++||+||.||+++.. |
T Consensus 267 N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~h 346 (403)
T 4etp_A 267 NEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRH 346 (403)
T ss_dssp HHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSC
T ss_pred CcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Confidence 9999999999999999998888888899999999999999999999999999999999999999999999997654 9
Q ss_pred CCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcccccc
Q 042277 788 VPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAA 843 (899)
Q Consensus 788 VPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~ 843 (899)
|||||||||+||||||||||+|+|||||||+..+++||++||+||+||++|++++.
T Consensus 347 iPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 347 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp CCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred CCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999998874
No 2
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=4.5e-91 Score=788.81 Aligned_cols=351 Identities=40% Similarity=0.630 Sum_probs=292.0
Q ss_pred HHhHHHHHHHHhhhhhhhhhcCCCEEEEEecCCCCCCCCCCCceEEEEccCCeEEecCCCCC--CCCCceeEEeceeeCC
Q 042277 478 AENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKP--GKDGQRMFKFNKVFGP 555 (899)
Q Consensus 478 ~~~y~~~~~e~R~l~N~iqelkGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~~v~i~~p~~~--~~~~~k~F~FD~VF~~ 555 (899)
.+.++....+||+|||++||++|||||||||||+++.|.....++....++..+.+..+... ...+.+.|.||+||+|
T Consensus 37 ~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~ 116 (412)
T 3u06_A 37 KEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHP 116 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCC
Confidence 34456667889999999999999999999999999988766655544455566666554322 2234678999999999
Q ss_pred CCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhcc-CCCeeEEEEEE
Q 042277 556 DATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNR-RSSIMYEVAVQ 634 (899)
Q Consensus 556 ~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS 634 (899)
+++|++||+.+.|+|+++|+|||+||||||||||||||||+|++ +++|||||++++||..+... ...+.|.|+||
T Consensus 117 ~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS 192 (412)
T 3u06_A 117 LSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP----ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKAT 192 (412)
T ss_dssp TCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEET----TEECHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCC----CCCccHHHHHHHHHHhhhhhcccCceEEEEEE
Confidence 99999999989999999999999999999999999999999954 57899999999999987653 45789999999
Q ss_pred EEEEecccccccccCcchhhhhhhhcccccccce-eccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCC
Q 042277 635 MVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIM-STSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNER 713 (899)
Q Consensus 635 ~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~-~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~ 713 (899)
|+|||||+|+|||++.... ..+. ..+..+|++|.|++++.|.|+++++.+|..|.++|++++|.||..
T Consensus 193 ~~EIYnE~i~DLL~~~~~~-----------~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~ 261 (412)
T 3u06_A 193 FLEIYNEVLYDLLSNEQKD-----------MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNER 261 (412)
T ss_dssp EEEEETTEEEETTCCSCCC-----------CCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHH
T ss_pred EEEEeCCeeEEcCCCCCCC-----------ceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCC
Confidence 9999999999999765421 1222 234567899999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEEEeecCCCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCC
Q 042277 714 SSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNS 793 (899)
Q Consensus 714 SSRSH~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdS 793 (899)
|||||+||+|+|.+.+...+....|+|+|||||||||.. .|.|++|+.+||+||++||+||.||++++.|||||||
T Consensus 262 SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdS 337 (412)
T 3u06_A 262 SSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNS 337 (412)
T ss_dssp HTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGS
T ss_pred CcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCcccc
Confidence 999999999999998887777889999999999999974 4689999999999999999999999999999999999
Q ss_pred hhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccCc
Q 042277 794 KLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSK 847 (899)
Q Consensus 794 KLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~ 847 (899)
|||+||||||||||+|+|||||||+..+++||++||+||+||+.|++++++.+.
T Consensus 338 kLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~ 391 (412)
T 3u06_A 338 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391 (412)
T ss_dssp HHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999999999999999999999998877554
No 3
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1e-89 Score=767.85 Aligned_cols=353 Identities=38% Similarity=0.618 Sum_probs=305.7
Q ss_pred hhcCCCEEEEEecCCCCCCCCCCCceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhchHHHHHHHHc
Q 042277 496 QDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSVLD 575 (899)
Q Consensus 496 qelkGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v~pLV~svLd 575 (899)
||++|||||||||||+++.|...+.++.+...+ .+.+..+... ...+.|.||+||+++++|++||+.+.|+|+++|+
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~ 77 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVD-EFTVEHLWKD--DKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVD 77 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEECS-SSEEEEECTT--SCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcCC-cEEEEecCCC--CCceEEecCEEECCCCCcceehhhhhhhhHhhhc
Confidence 689999999999999998876544444443333 3333333222 2358899999999999999999999999999999
Q ss_pred CCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhh
Q 042277 576 GYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWIL 655 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 655 (899)
|||+||||||||||||||||+|++ .++|||||++++||..+......+.|.|++||+|||||+|+|||.+....
T Consensus 78 G~n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-- 151 (369)
T 3cob_A 78 GYNVCIFAYGQTGSGKTFTIYGAD----SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAK-- 151 (369)
T ss_dssp TCEEEEEEEECTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSC--
T ss_pred CCceEEEEECCCCCCCeEeecCCC----CCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccC--
Confidence 999999999999999999999964 57899999999999999887777999999999999999999999875421
Q ss_pred hhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCCc
Q 042277 656 AICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGIP 735 (899)
Q Consensus 656 ~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~~ 735 (899)
.....+.++..+|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+..++..
T Consensus 152 -------~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 224 (369)
T 3cob_A 152 -------RLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAI 224 (369)
T ss_dssp -------CCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCE
T ss_pred -------CcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcE
Confidence 1112345567789999999999999999999999999999999999999999999999999999988888888
Q ss_pred eeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcceEEEEEe
Q 042277 736 LHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQL 815 (899)
Q Consensus 736 ~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnskT~mI~~I 815 (899)
..|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+|||||
T Consensus 225 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~i 304 (369)
T 3cob_A 225 ARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNI 304 (369)
T ss_dssp EEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEE
T ss_pred EEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCccccccccCcchhhHHHHHHHHHHHHHH
Q 042277 816 NPDVNSYSESLSTLKFAERVSGVELGAARSSKEGRDVRELMEQVASLKDT 865 (899)
Q Consensus 816 SP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~~~~~~~~L~eqv~~Lk~~ 865 (899)
||+..+++||++||+||+||+.|++.|..+... ..+..|+++++.|+++
T Consensus 305 sP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~-~ei~~L~~~l~~~~~~ 353 (369)
T 3cob_A 305 SPAESNLDETHNSLTYASRVRSIVNDPSKNVSS-KEVARLKKLVSYWKEQ 353 (369)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC-HHHHHHHHHTTCC---
T ss_pred CCccccHHHHHHHHHHHHHHhhcccCCcccCCH-HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998765443 4455555555555444
No 4
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.3e-89 Score=764.56 Aligned_cols=344 Identities=44% Similarity=0.658 Sum_probs=258.8
Q ss_pred hhhhhhhhhcCCCEEEEEecCCCCCCCCCCCc-eEEEE-------ccCCeEEecCCCCC--------CCCCceeEEecee
Q 042277 489 RRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQT-TIEYI-------GENGELIFGNPSKP--------GKDGQRMFKFNKV 552 (899)
Q Consensus 489 R~l~N~iqelkGnIrV~~RVRP~~~~E~~~~~-~v~~~-------~~~~~v~i~~p~~~--------~~~~~k~F~FD~V 552 (899)
-+|||++|+++|||||||||||+++.|..... ++.+. .++..+.+..|... .....+.|.||+|
T Consensus 11 ~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~V 90 (376)
T 2rep_A 11 SSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRV 90 (376)
T ss_dssp ------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEE
T ss_pred ccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEE
Confidence 57999999999999999999999999876542 22222 23345555543210 1123468999999
Q ss_pred eCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhcc-CCCeeEEE
Q 042277 553 FGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNR-RSSIMYEV 631 (899)
Q Consensus 553 F~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~-~~~~~~~V 631 (899)
|+++++|++||+++.|+|+++|+|||+||||||||||||||||+|++...++.+|||||++++||..++.. ...+.|.|
T Consensus 91 f~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v 170 (376)
T 2rep_A 91 FPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSF 170 (376)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEE
T ss_pred cCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999987655678999999999999988654 45789999
Q ss_pred EEEEEEEecccccccccCcchhhhhhhhcccccccceecc-CCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCC
Q 042277 632 AVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTS-QPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATAL 710 (899)
Q Consensus 632 ~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~-~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~ 710 (899)
+|||+|||||+|+|||++..... ......+.... ..+|++|.|++++.|.|++|++.+|..|.++|++++|.|
T Consensus 171 ~vS~~EIYnE~i~DLL~~~~~~~------~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~ 244 (376)
T 2rep_A 171 VASYVEIYNETVRDLLATGTRKG------QGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQ 244 (376)
T ss_dssp EEEEEEEETTEEEETTCCC--------------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC---
T ss_pred EEEEEEEECCEeeEccccccccc------cCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccC
Confidence 99999999999999998753210 00112222222 457899999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEeecCCCCCceeeEEEEEecCCCCCcccccchh----hhHHHHHHhhhhHHHHHHHHHHHccCCC
Q 042277 711 NERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATG----DRLKEAQHINKSLSALGDVIFALAQKSP 786 (899)
Q Consensus 711 N~~SSRSH~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~~ks~~~g----~rlkEa~~INkSLsaLg~VI~aLa~k~~ 786 (899)
|+.|||||+||+|+|.+.+...+....|+|+|||||||||++++++.| +|++|+.+||+||++||+||.||+++..
T Consensus 245 N~~SSRSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~ 324 (376)
T 2rep_A 245 NERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKES 324 (376)
T ss_dssp --CGGGSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCS
T ss_pred CCCCCCceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998877777788999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCc
Q 042277 787 HVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 787 hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v 838 (899)
||||||||||+||||+|||||+|+|||||||+..+++||++||+||+||+++
T Consensus 325 hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 325 HVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp CCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred ccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999864
No 5
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.4e-88 Score=755.48 Aligned_cols=339 Identities=44% Similarity=0.664 Sum_probs=267.5
Q ss_pred hhcCCCEEEEEecCCCCCCCCCCCceEEEE--c-cCC--eEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhchHHHH
Q 042277 496 QDLKGNIRVYCRIRPFLPGQTKKQTTIEYI--G-ENG--ELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLI 570 (899)
Q Consensus 496 qelkGnIrV~~RVRP~~~~E~~~~~~v~~~--~-~~~--~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v~pLV 570 (899)
.+|||||||||||||+++.|......+.+. . +++ .+.+..+ .+....+.|.||+||+|+++|++||+++.|+|
T Consensus 1 m~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv 78 (349)
T 3t0q_A 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRN--EGRILSYNFQFDMIFEPSHTNKEIFEEIRQLV 78 (349)
T ss_dssp ----CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEEC--C--CEEEEEEESEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCC--CCcccceeeecCEEECCCccHHHHHHHHHHHH
Confidence 368999999999999999987665544432 1 112 3444333 23334678999999999999999999999999
Q ss_pred HHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhc-cCCCeeEEEEEEEEEEecccccccccC
Q 042277 571 RSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQN-RRSSIMYEVAVQMVEIYNEQVRDLLTN 649 (899)
Q Consensus 571 ~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~V~DLL~~ 649 (899)
+++|+|||+||||||||||||||||+|+ +.|||||++++||..+.. ....+.|.|.|||+|||||+|+|||.+
T Consensus 79 ~~~l~G~n~tifAYGqTGSGKTyTm~g~------~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 152 (349)
T 3t0q_A 79 QSSLDGYNVCIFAYGQTGSGKTYTMLNA------GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRD 152 (349)
T ss_dssp HGGGTTCEEEEEEECSTTSSHHHHHHST------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-
T ss_pred HHHHCCcceeEEEeCCCCCCCceEeCCC------CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccc
Confidence 9999999999999999999999999995 359999999999998765 345789999999999999999999987
Q ss_pred cchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeec
Q 042277 650 DVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKD 729 (899)
Q Consensus 650 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~ 729 (899)
...........+.....+..++..+|++|.|++++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~ 232 (349)
T 3t0q_A 153 FKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRN 232 (349)
T ss_dssp --------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEE
T ss_pred cccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEe
Confidence 64321111111223344555556678999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC---CCCCCCCChhhHhhhhhcCCC
Q 042277 730 LKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS---PHVPYRNSKLTQVLQSSLGGQ 806 (899)
Q Consensus 730 ~~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~---~hVPYRdSKLT~LLqdsLGGn 806 (899)
..++....|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||++++ .||||||||||+||||+||||
T Consensus 233 ~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGn 312 (349)
T 3t0q_A 233 LHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGD 312 (349)
T ss_dssp TTTCCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTT
T ss_pred cCCCCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 88888889999999999999999999999999999999999999999999998765 499999999999999999999
Q ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccc
Q 042277 807 AKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGA 842 (899)
Q Consensus 807 skT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~ 842 (899)
|+|+|||||||+..+++||++||+||+||+.|++++
T Consensus 313 skt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 313 SKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp CEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999999998764
No 6
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.1e-87 Score=737.44 Aligned_cols=326 Identities=49% Similarity=0.723 Sum_probs=279.8
Q ss_pred hcCCCEEEEEecCCCCCCCCCC---CceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhchHHHHHHH
Q 042277 497 DLKGNIRVYCRIRPFLPGQTKK---QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIRSV 573 (899)
Q Consensus 497 elkGnIrV~~RVRP~~~~E~~~---~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v~pLV~sv 573 (899)
+++|||||+|||||+++.|... ..++.+..+++.++...+ ....+.|.||+||+++++|++||+++.|+|+++
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~ 76 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH----KGKPVSFELDKVFSPQASQQDVFQEVQALVTSC 76 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE----TTEEEEEECSEEECTTCCHHHHHTTTHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC----CCCeeEEecCeEeCCCCCcHhHHHHHHHHHHHH
Confidence 5799999999999999887643 234555444433332211 124578999999999999999999999999999
Q ss_pred HcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchh
Q 042277 574 LDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFW 653 (899)
Q Consensus 574 LdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~ 653 (899)
|+|||+||||||||||||||||+|++ +++|||||++++||..++.....+.|.|+|||+|||||+|+|||++....
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 152 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTMEGTA----ENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQE 152 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCC
T ss_pred hCCCEEEEEeECCCCCCCcEEEecCC----CCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccc
Confidence 99999999999999999999999953 57899999999999999888888999999999999999999999875321
Q ss_pred hhhhhhcccccccce-eccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCC
Q 042277 654 ILAICFLDLHTLGIM-STSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKT 732 (899)
Q Consensus 654 ~~~~~~~~~~~~~i~-~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~ 732 (899)
...+. .++..+|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+..+
T Consensus 153 ----------~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 222 (330)
T 2h58_A 153 ----------KLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST 222 (330)
T ss_dssp ----------CCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT
T ss_pred ----------cceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC
Confidence 12222 2456688999999999999999999999999999999999999999999999999999988777
Q ss_pred CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcceEEE
Q 042277 733 GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMF 812 (899)
Q Consensus 733 ~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnskT~mI 812 (899)
+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||+|+||
T Consensus 223 ~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI 302 (330)
T 2h58_A 223 GLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 302 (330)
T ss_dssp TEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEE
T ss_pred CcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEE
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhcCccc
Q 042277 813 VQLNPDVNSYSESLSTLKFAERVSGVEL 840 (899)
Q Consensus 813 ~~ISP~~~~~~ETlsTL~FA~R~k~v~~ 840 (899)
+||||+..+++||++||+||+||++|++
T Consensus 303 ~~isP~~~~~~ETl~TL~fA~rak~i~~ 330 (330)
T 2h58_A 303 VQVSPVEKNTSETLYSLKFAERVRSVEL 330 (330)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHC----
T ss_pred EEeCCccccHHHHHHHHHHHHHHhhCcC
Confidence 9999999999999999999999999874
No 7
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=6.7e-87 Score=741.04 Aligned_cols=336 Identities=41% Similarity=0.621 Sum_probs=272.4
Q ss_pred cCCCEEEEEecCCCCC-CCCCCCceEEEEc---cCC--eEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhchHHHHH
Q 042277 498 LKGNIRVYCRIRPFLP-GQTKKQTTIEYIG---ENG--ELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDTQPLIR 571 (899)
Q Consensus 498 lkGnIrV~~RVRP~~~-~E~~~~~~v~~~~---~~~--~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v~pLV~ 571 (899)
|||||||||||||+++ .|......+.+.. +++ .+.+..+. +....+.|.||+||+++++|++||+++.|+|+
T Consensus 1 lk~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~ 78 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ--NTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQ 78 (347)
T ss_dssp --CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGG--GTTCEEEEEESEEECTTCCHHHHHHHHHHHHG
T ss_pred CCCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCC--CCcCceEEeeCEEECCCCCHHHHHHHHHHHHH
Confidence 6899999999999987 4434444444432 112 34444332 22346889999999999999999999999999
Q ss_pred HHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhcc-CCCeeEEEEEEEEEEecccccccccCc
Q 042277 572 SVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNR-RSSIMYEVAVQMVEIYNEQVRDLLTND 650 (899)
Q Consensus 572 svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~V~DLL~~~ 650 (899)
++|+|||+||||||||||||||||+|+ ++|||||++++||..+... ...+.|.|+|||+|||||+|+|||++.
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 152 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNP------GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSD 152 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHST------TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCC------CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCc
Confidence 999999999999999999999999994 3699999999999987653 356899999999999999999999876
Q ss_pred chhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecC
Q 042277 651 VFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDL 730 (899)
Q Consensus 651 ~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~ 730 (899)
...... ........+..++..+|++|.|++++.|.++++++.+|..|.++|++++|.||+.|||||+||+|+|.+.+.
T Consensus 153 ~~~~~~--~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 230 (347)
T 1f9v_A 153 NNNKED--TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNA 230 (347)
T ss_dssp -------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC
T ss_pred cccccc--cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecC
Confidence 432100 000112334444566889999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC---CCCCCCCChhhHhhhhhcCCCc
Q 042277 731 KTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS---PHVPYRNSKLTQVLQSSLGGQA 807 (899)
Q Consensus 731 ~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~---~hVPYRdSKLT~LLqdsLGGns 807 (899)
.++....|+|+|||||||||++++++.|+|++|+.+||+||++||+||.||+++. .||||||||||+||||+|||||
T Consensus 231 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGns 310 (347)
T 1f9v_A 231 KTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDS 310 (347)
T ss_dssp --CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTC
T ss_pred CCCceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCc
Confidence 7788889999999999999999999999999999999999999999999999876 8999999999999999999999
Q ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcccccc
Q 042277 808 KTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAA 843 (899)
Q Consensus 808 kT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~ 843 (899)
+|+|||||||+..+++||++||+||+||++|++++.
T Consensus 311 kt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 311 KTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred cEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999999999998863
No 8
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2e-86 Score=737.16 Aligned_cols=331 Identities=39% Similarity=0.621 Sum_probs=268.6
Q ss_pred CCCEEEEEecCCCCCCCCC--CCceEEEEccCCeEEecCCCCC-----CCCCceeEEeceeeCCCCChhhHHhc-hHHHH
Q 042277 499 KGNIRVYCRIRPFLPGQTK--KQTTIEYIGENGELIFGNPSKP-----GKDGQRMFKFNKVFGPDATQAEVFSD-TQPLI 570 (899)
Q Consensus 499 kGnIrV~~RVRP~~~~E~~--~~~~v~~~~~~~~v~i~~p~~~-----~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV 570 (899)
.+||||||||||+++.|.. ...++.+.++++.+.+.+|... .....+.|.||+||+++++|++||+. ++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 5899999999999988754 3456777777778888776431 22346899999999999999999998 59999
Q ss_pred HHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCc
Q 042277 571 RSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTND 650 (899)
Q Consensus 571 ~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~ 650 (899)
+++|+|||+||||||||||||||||+|++ +++|||||++++||..+......+.|.|++||+|||||+|+|||++.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 158 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNK----EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN 158 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCC----ccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCC
Confidence 99999999999999999999999999954 67899999999999999877788999999999999999999999853
Q ss_pred chhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecC
Q 042277 651 VFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDL 730 (899)
Q Consensus 651 ~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~ 730 (899)
.. + .+.+++.+|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+.
T Consensus 159 ~~------------l-~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 225 (350)
T 2vvg_A 159 TK------------L-PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEV 225 (350)
T ss_dssp EE------------E-CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC
T ss_pred cC------------c-eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeec
Confidence 21 1 2445677899999999999999999999999999999999999999999999999999988765
Q ss_pred CCC--CceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcc
Q 042277 731 KTG--IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAK 808 (899)
Q Consensus 731 ~~~--~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnsk 808 (899)
..+ ....|+|+|||||||||..++++.|+|++|+.+||+||++||+||.+|+++..||||||||||+||||+|||||+
T Consensus 226 ~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnsk 305 (350)
T 2vvg_A 226 IENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSK 305 (350)
T ss_dssp ----CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSE
T ss_pred cCCCccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCcc
Confidence 433 346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccC
Q 042277 809 TLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSS 846 (899)
Q Consensus 809 T~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~ 846 (899)
|+||+||||+..+++||++||+||+|++.|++.|..+.
T Consensus 306 t~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~ 343 (350)
T 2vvg_A 306 TLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINE 343 (350)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCB
T ss_pred EEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecC
Confidence 99999999999999999999999999999999987653
No 9
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.1e-86 Score=743.08 Aligned_cols=328 Identities=39% Similarity=0.588 Sum_probs=278.3
Q ss_pred hcCCCEEEEEecCCCCCCCCCCC--ceEEEEcc--CCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhch-HHHHH
Q 042277 497 DLKGNIRVYCRIRPFLPGQTKKQ--TTIEYIGE--NGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDT-QPLIR 571 (899)
Q Consensus 497 elkGnIrV~~RVRP~~~~E~~~~--~~v~~~~~--~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v-~pLV~ 571 (899)
..++||||+|||||+++.|...+ .++.+..+ +..+.+ ..+.|.||+||+++++|++||+.+ +|+|+
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~---------~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~ 78 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI---------AGKVYLFDKVFKPNASQEKVYNEAAKSIVT 78 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE---------TTEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE---------CCEEEeCceEecCCCCHHHHHHHhhhhHHH
Confidence 35789999999999998875433 34444432 223333 236899999999999999999985 99999
Q ss_pred HHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcc
Q 042277 572 SVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDV 651 (899)
Q Consensus 572 svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~ 651 (899)
++|+|||+||||||||||||||||+|+.+ .+..+|||||++++||..+......+.|.|+|||+|||||+|+|||++..
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~-~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 157 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTMEGVIG-DSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK 157 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBSTT-CTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC
T ss_pred HHhCCCceEEEeecCCCCCCceEEecCCC-CcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc
Confidence 99999999999999999999999999754 34578999999999999998877889999999999999999999998653
Q ss_pred hhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCC
Q 042277 652 FWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLK 731 (899)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~ 731 (899)
.. ..+.+++..|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+..
T Consensus 158 ~~------------l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 225 (365)
T 2y65_A 158 VN------------LSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE 225 (365)
T ss_dssp CS------------BCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT
T ss_pred CC------------ceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC
Confidence 21 134556778999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC-CCCCCCCCChhhHhhhhhcCCCcceE
Q 042277 732 TGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK-SPHVPYRNSKLTQVLQSSLGGQAKTL 810 (899)
Q Consensus 732 ~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-~~hVPYRdSKLT~LLqdsLGGnskT~ 810 (899)
.+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+
T Consensus 226 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 305 (365)
T 2y65_A 226 NQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTT 305 (365)
T ss_dssp TCCEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEE
T ss_pred CCCEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEE
Confidence 77888999999999999999999999999999999999999999999999986 57999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccC
Q 042277 811 MFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSS 846 (899)
Q Consensus 811 mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~ 846 (899)
||+||||+..+++||++||+||+||+.|++.+..+.
T Consensus 306 mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~ 341 (365)
T 2y65_A 306 IVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNE 341 (365)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEE
T ss_pred EEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCC
Confidence 999999999999999999999999999999887654
No 10
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.8e-86 Score=739.76 Aligned_cols=329 Identities=37% Similarity=0.596 Sum_probs=252.7
Q ss_pred hhhhhhhcCCCEEEEEecCCCCCCCCCCC--ceEEEEccCCeEEecCCCCC-----------------CCCCceeEEece
Q 042277 491 LFNEVQDLKGNIRVYCRIRPFLPGQTKKQ--TTIEYIGENGELIFGNPSKP-----------------GKDGQRMFKFNK 551 (899)
Q Consensus 491 l~N~iqelkGnIrV~~RVRP~~~~E~~~~--~~v~~~~~~~~v~i~~p~~~-----------------~~~~~k~F~FD~ 551 (899)
+++..+|++|||||+|||||+++.|...+ .++.+. ++ .+++.+|... .....+.|.||+
T Consensus 1 ~~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~ 78 (355)
T 3lre_A 1 MSVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVV-DK-HILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDA 78 (355)
T ss_dssp -----------CEEEEEECCCCHHHHHTTCCBSEEEC-SS-SEEEEC------------------------CCEEEECSE
T ss_pred CCcChhhccCCCEEEEEeCcCChHHHhcCCceEEEec-CC-ceEEecCCCCcceeecccccccccchhccCCCceEEece
Confidence 46788999999999999999998886433 344433 22 3344343321 012346899999
Q ss_pred eeCCCCChhhHHhch-HHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEE
Q 042277 552 VFGPDATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYE 630 (899)
Q Consensus 552 VF~~~atQeeVF~~v-~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~ 630 (899)
||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||+|++ .++||+||++++||..++.......|.
T Consensus 79 vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lf~~i~~~~~~~~~~ 154 (355)
T 3lre_A 79 VFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA----DEPGVMYLTMLHLYKCMDEIKEEKICS 154 (355)
T ss_dssp EECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred EECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCC----CCCCeeehhhhHHHHhhhhhccCceEE
Confidence 999999999999985 999999999999999999999999999999954 578999999999999998877788999
Q ss_pred EEEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCC
Q 042277 631 VAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATAL 710 (899)
Q Consensus 631 V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~ 710 (899)
|.|||+|||||+|+|||.+... ..+.+++.+|++|.|++++.|.|++|++.+|..|.++|++++|.|
T Consensus 155 v~vS~~EIYnE~i~DLL~~~~~-------------l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 221 (355)
T 3lre_A 155 TAVSYLEVYNEQIRDLLVNSGP-------------LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDM 221 (355)
T ss_dssp EEEEEEEEETTEEEESSSCCCC-------------BEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC----
T ss_pred EEEEEEEEECCEEEECcCCCCC-------------ceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccC
Confidence 9999999999999999986431 134566778999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEEeecCCC---CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC---
Q 042277 711 NERSSRSHSVVTVHVRGKDLKT---GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK--- 784 (899)
Q Consensus 711 N~~SSRSH~IftI~v~~~~~~~---~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k--- 784 (899)
|..|||||+||+|+|.+.+... .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+++
T Consensus 222 N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~ 301 (355)
T 3lre_A 222 NATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRK 301 (355)
T ss_dssp -CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC-----
T ss_pred cCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999998876432 3356799999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCc
Q 042277 785 SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 785 ~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v 838 (899)
..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|
T Consensus 302 ~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 302 NQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp ---CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred CCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 469999999999999999999999999999999999999999999999999976
No 11
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1.5e-86 Score=742.41 Aligned_cols=341 Identities=38% Similarity=0.586 Sum_probs=287.6
Q ss_pred hhhhhcCCCEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHH
Q 042277 493 NEVQDLKGNIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPL 569 (899)
Q Consensus 493 N~iqelkGnIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pL 569 (899)
...++.++||||+|||||+++.|... ..++.+..+++.+.+.+|........+.|.||+||+++++|++||+. ++|+
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~pl 93 (372)
T 3b6u_A 14 LYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPL 93 (372)
T ss_dssp -------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHH
T ss_pred CccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHH
Confidence 45678899999999999999877533 45677777778898988865445567899999999999999999998 5999
Q ss_pred HHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccC
Q 042277 570 IRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTN 649 (899)
Q Consensus 570 V~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~ 649 (899)
|+++|+|||+||||||||||||||||+|+.. .++++|||||++++||..+.. ...+.|.|+|||+|||||+|+|||++
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~-~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG-DPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCTT-SGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEecCCC-CcccCCcHHHHHHHHHHHhhh-ccCCceEEEEEEEEEeCCEEEECCCC
Confidence 9999999999999999999999999999653 346789999999999998875 45679999999999999999999987
Q ss_pred cchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeec
Q 042277 650 DVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKD 729 (899)
Q Consensus 650 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~ 729 (899)
.... .+ .+.+++.+|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|...+
T Consensus 172 ~~~~----------~l-~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~ 240 (372)
T 3b6u_A 172 DQTK----------RL-ELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSE 240 (372)
T ss_dssp CTTC----------CB-CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC
T ss_pred CCCC----------Cc-eEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEee
Confidence 5421 11 244567789999999999999999999999999999999999999999999999999998765
Q ss_pred CC---CCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC-CCCCCCCChhhHhhhhhcCC
Q 042277 730 LK---TGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS-PHVPYRNSKLTQVLQSSLGG 805 (899)
Q Consensus 730 ~~---~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~-~hVPYRdSKLT~LLqdsLGG 805 (899)
.. ......|+|+|||||||||..++++.|+|++|+.+||+||++||+||.||+++. .||||||||||+||||+|||
T Consensus 241 ~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgG 320 (372)
T 3b6u_A 241 VGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGG 320 (372)
T ss_dssp -----CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTS
T ss_pred cCCCCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCC
Confidence 32 234568999999999999999999999999999999999999999999999754 69999999999999999999
Q ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccC
Q 042277 806 QAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSS 846 (899)
Q Consensus 806 nskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~ 846 (899)
||+|+|||||||+..+++||++||+||+||+.|++.|..+.
T Consensus 321 nskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~ 361 (372)
T 3b6u_A 321 NAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNE 361 (372)
T ss_dssp SSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC
T ss_pred CccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecC
Confidence 99999999999999999999999999999999999887653
No 12
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.1e-85 Score=732.93 Aligned_cols=331 Identities=38% Similarity=0.577 Sum_probs=298.3
Q ss_pred cCCCEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHH
Q 042277 498 LKGNIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVL 574 (899)
Q Consensus 498 lkGnIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svL 574 (899)
-++||||+|||||+++.|... ..++.+.+ +..+.+... ...+.|.||+||+++++|++||+. ++|+|+++|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 77 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQG-PDTCTVDSK-----EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDIL 77 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECS-TTEEEECST-----TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHT
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcC-CCeEEEccC-----CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHh
Confidence 469999999999999877543 34455443 345554322 246789999999999999999997 699999999
Q ss_pred cCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhh
Q 042277 575 DGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWI 654 (899)
Q Consensus 575 dGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~ 654 (899)
+|||+||||||||||||||||+|++...++.+|||||++++||..+......+.|.|+|||+|||||+|+|||++....
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~- 156 (355)
T 1goj_A 78 NGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDN- 156 (355)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCS-
T ss_pred CCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCC-
Confidence 9999999999999999999999976555678999999999999998887788999999999999999999999875421
Q ss_pred hhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCCC
Q 042277 655 LAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTGI 734 (899)
Q Consensus 655 ~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~~ 734 (899)
..+.++..+|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+..++.
T Consensus 157 -----------l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 225 (355)
T 1goj_A 157 -----------LPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGS 225 (355)
T ss_dssp -----------CCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTE
T ss_pred -----------ceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCc
Confidence 124556778999999999999999999999999999999999999999999999999999998887788
Q ss_pred ceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC-CCCCCCCCChhhHhhhhhcCCCcceEEEE
Q 042277 735 PLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK-SPHVPYRNSKLTQVLQSSLGGQAKTLMFV 813 (899)
Q Consensus 735 ~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-~~hVPYRdSKLT~LLqdsLGGnskT~mI~ 813 (899)
...|+|+|||||||||+.++++.|++++|+.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+|+||+
T Consensus 226 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~ 305 (355)
T 1goj_A 226 AKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLII 305 (355)
T ss_dssp EEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEE
T ss_pred eeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEE
Confidence 88999999999999999999999999999999999999999999999975 58999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhcCccccccccC
Q 042277 814 QLNPDVNSYSESLSTLKFAERVSGVELGAARSS 846 (899)
Q Consensus 814 ~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~ 846 (899)
||||+..+++||++||+||+||+.|++.+..+.
T Consensus 306 ~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~ 338 (355)
T 1goj_A 306 NCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNA 338 (355)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCS
T ss_pred EECcccccHHHHHHHHHHHHHHhhccCCceeCC
Confidence 999999999999999999999999999887654
No 13
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.1e-86 Score=728.11 Aligned_cols=319 Identities=38% Similarity=0.593 Sum_probs=289.4
Q ss_pred hcCCCEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHH
Q 042277 497 DLKGNIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSV 573 (899)
Q Consensus 497 elkGnIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~sv 573 (899)
..++||||+|||||+++.|... ..++.+.+ ++.+.+. .+.|.||+||+++++|++||+. ++|+|+++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~~---------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~ 73 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQG-EDTVVIA---------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDV 73 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEET-TTEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECC-CCeEEEC---------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHH
Confidence 4589999999999999887543 23444444 3455542 3689999999999999999998 59999999
Q ss_pred HcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchh
Q 042277 574 LDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFW 653 (899)
Q Consensus 574 LdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~ 653 (899)
|+|||+||||||||||||||||+|+.. .+..+|||||++++||..+......+.|.|+|||+|||||+|+|||++....
T Consensus 74 l~G~n~tifAYGqTGSGKTyTm~G~~~-~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~ 152 (325)
T 1bg2_A 74 LEGYNGTIFAYGQTSSGKTHTMEGKLH-DPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN 152 (325)
T ss_dssp HTTCCEEEEEECSTTSSHHHHHTBSTT-CTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCS
T ss_pred hCCCeEEEEEECCCCCCCceEecccCC-CcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCC
Confidence 999999999999999999999999653 3457899999999999998877778999999999999999999999865321
Q ss_pred hhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCCC
Q 042277 654 ILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKTG 733 (899)
Q Consensus 654 ~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~~ 733 (899)
..+.++...|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+...+
T Consensus 153 ------------l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 220 (325)
T 1bg2_A 153 ------------LSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTE 220 (325)
T ss_dssp ------------BCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTC
T ss_pred ------------ceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCC
Confidence 13455677899999999999999999999999999999999999999999999999999999887777
Q ss_pred CceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcceEEEE
Q 042277 734 IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFV 813 (899)
Q Consensus 734 ~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnskT~mI~ 813 (899)
....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+||+
T Consensus 221 ~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia 300 (325)
T 1bg2_A 221 QKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300 (325)
T ss_dssp CEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEE
T ss_pred cEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHhcCc
Q 042277 814 QLNPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 814 ~ISP~~~~~~ETlsTL~FA~R~k~v 838 (899)
||||+..+++||++||+||+||++|
T Consensus 301 ~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 301 CCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp EECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred EECCccccHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999986
No 14
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=4.1e-86 Score=737.80 Aligned_cols=338 Identities=36% Similarity=0.570 Sum_probs=273.4
Q ss_pred hcCCCEEEEEecCCCCCCCCC--CCceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhch-HHHHHHH
Q 042277 497 DLKGNIRVYCRIRPFLPGQTK--KQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDT-QPLIRSV 573 (899)
Q Consensus 497 elkGnIrV~~RVRP~~~~E~~--~~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v-~pLV~sv 573 (899)
+.++||||+|||||+++.|.. ...++.+.+....+.+..+........+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 457999999999999987753 3345666666667766543222223467899999999999999999985 9999999
Q ss_pred HcCCCeeEeeccccCCcccceeecCCCCC-------CCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEeccccccc
Q 042277 574 LDGYNVCIFAYGQTGSGKTYTMSGPSGPH-------EEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDL 646 (899)
Q Consensus 574 LdGyN~cIfAYGQTGSGKTyTM~G~~~~~-------~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DL 646 (899)
|+|||+||||||||||||||||+|++... ...+|||||++++||+.+.. ..+.|.|+|||+|||||+|+||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~DL 162 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDL 162 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEET
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCceeeeh
Confidence 99999999999999999999999975421 22479999999999998764 4689999999999999999999
Q ss_pred ccCcchhhhhhhhcccccccceeccC--CCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEE
Q 042277 647 LTNDVFWILAICFLDLHTLGIMSTSQ--PNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVH 724 (899)
Q Consensus 647 L~~~~~~~~~~~~~~~~~~~i~~~~~--~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~ 724 (899)
|++..... ..+.+ .+++ ..|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+
T Consensus 163 L~~~~~~~--------~~l~i-~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~ 233 (359)
T 1x88_A 163 LNPSSDVS--------ERLQM-FDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVT 233 (359)
T ss_dssp TCTTSCTT--------CCBEE-EEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEE
T ss_pred hccccccc--------ccceE-EeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEE
Confidence 98764310 11222 2222 3689999999999999999999999999999999999999999999999999
Q ss_pred EEeecCC-CC--CceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhh
Q 042277 725 VRGKDLK-TG--IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQS 801 (899)
Q Consensus 725 v~~~~~~-~~--~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqd 801 (899)
|...+.. .+ ....|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||+++..||||||||||+||||
T Consensus 234 i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqd 313 (359)
T 1x88_A 234 IHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQD 313 (359)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGG
T ss_pred EEEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHH
Confidence 9875432 22 24579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcccccccc
Q 042277 802 SLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARS 845 (899)
Q Consensus 802 sLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~ 845 (899)
||||||+|+|||||||+..+++||++||+||+||+.|++.|..+
T Consensus 314 sLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn 357 (359)
T 1x88_A 314 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357 (359)
T ss_dssp GSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC--
T ss_pred HhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeC
Confidence 99999999999999999999999999999999999999988654
No 15
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-85 Score=737.81 Aligned_cols=336 Identities=35% Similarity=0.518 Sum_probs=254.1
Q ss_pred hhhhhhcCCCEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHH
Q 042277 492 FNEVQDLKGNIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQP 568 (899)
Q Consensus 492 ~N~iqelkGnIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~p 568 (899)
|-..+..+++|||+|||||+++.|... ..++...+ +..+.+.++.. ....+.|.||+||+++++|++||+. ++|
T Consensus 13 ~~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~i~~~~~--~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~p 89 (388)
T 3bfn_A 13 NLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMD-SCSLEIANWRN--HQETLKYQFDAFYGERSTQQDIYAGSVQP 89 (388)
T ss_dssp -CCSSSCCCCCEEEEEECCCC--------------------------------CEEEEECSEEECTTCCHHHHHHHHTGG
T ss_pred cccccCCCCCEEEEEECCCCChhhhccCCCceEEecC-CCeEEEecCCC--CCCeeEEEcceEecCCCCHhHHHHHHHHH
Confidence 456788899999999999999988653 33444332 33555554432 1235789999999999999999997 699
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhcc---CCCeeEEEEEEEEEEecccccc
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNR---RSSIMYEVAVQMVEIYNEQVRD 645 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~---~~~~~~~V~vS~lEIYnE~V~D 645 (899)
+|+++|+|||+||||||||||||||||+|++ +++|||||++++||..+... ...+.|.|+|||+|||||+|+|
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~----~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~D 165 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTMLGSP----EQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLD 165 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEE
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEeecCc----cccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeee
Confidence 9999999999999999999999999999954 57899999999999987653 4568999999999999999999
Q ss_pred cccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEE
Q 042277 646 LLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHV 725 (899)
Q Consensus 646 LL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v 725 (899)
||++.... ..+.++..+|++|.|+++++|.|++|++.+|..|.++|++++|.||..|||||+||+|+|
T Consensus 166 LL~~~~~~------------l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v 233 (388)
T 3bfn_A 166 LLDPASGD------------LVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKV 233 (388)
T ss_dssp SSSCSSCB------------CCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEE
T ss_pred hhccCCCC------------ceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEE
Confidence 99875421 134566778999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC-CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcC
Q 042277 726 RGKDLKT-GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLG 804 (899)
Q Consensus 726 ~~~~~~~-~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLG 804 (899)
.+.+... .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+++..||||||||||+|||||||
T Consensus 234 ~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLg 313 (388)
T 3bfn_A 234 DQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLG 313 (388)
T ss_dssp EEEESSTTCCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSS
T ss_pred EEeccCCCCceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhC
Confidence 8876443 345789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccC
Q 042277 805 GQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSS 846 (899)
Q Consensus 805 GnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~ 846 (899)
|||+|+|||||||+..+++||++||+||+||+.|.+.|..+.
T Consensus 314 GnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~ 355 (388)
T 3bfn_A 314 GSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNE 355 (388)
T ss_dssp TTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC-------
T ss_pred CCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccC
Confidence 999999999999999999999999999999999999887653
No 16
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1e-84 Score=742.97 Aligned_cols=342 Identities=37% Similarity=0.565 Sum_probs=274.2
Q ss_pred hhhhcCCCEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCCC-----------CCCceeEEeceeeCC-----
Q 042277 494 EVQDLKGNIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPG-----------KDGQRMFKFNKVFGP----- 555 (899)
Q Consensus 494 ~iqelkGnIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~~-----------~~~~k~F~FD~VF~~----- 555 (899)
...++++||||+|||||+++.|... ..++.+......+.+..|.... ....+.|.||+||++
T Consensus 32 ~~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~ 111 (443)
T 2owm_A 32 VSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTED 111 (443)
T ss_dssp --CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTS
T ss_pred ccCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCC
Confidence 4578999999999999999887533 3345554444566665553211 113588999999976
Q ss_pred --CCChhhHHhch-HHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhcc---CCCeeE
Q 042277 556 --DATQAEVFSDT-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNR---RSSIMY 629 (899)
Q Consensus 556 --~atQeeVF~~v-~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~---~~~~~~ 629 (899)
.++|++||+.+ .|+|+++|+|||+||||||||||||||||+|++ +++|||||++++||..+... ...+.|
T Consensus 112 ~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~----~~~GIipr~~~~lF~~i~~~~~~~~~~~~ 187 (443)
T 2owm_A 112 EHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP----DQPGLIPRTCEDLFQRIASAQDETPNISY 187 (443)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCT----TSCCHHHHHHHHHHHHHHHTTTTSTTCEE
T ss_pred ccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCC----CCCchHHHHHHHHHHHHHhhhcccCCceE
Confidence 48999999985 899999999999999999999999999999954 57899999999999987654 357899
Q ss_pred EEEEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccC
Q 042277 630 EVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATA 709 (899)
Q Consensus 630 ~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~ 709 (899)
.|+|||+|||||+|+|||++.... .......+.+++.+|++|.|++++.|.|++|++.+|..|.++|++++|.
T Consensus 188 ~V~vS~lEIYnE~i~DLL~~~~~~-------~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~ 260 (443)
T 2owm_A 188 NVKVSYFEVYNEHVRDLLAPVVPN-------KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTK 260 (443)
T ss_dssp EEEEEEEEEETTEEEETTSCCCSS-------CCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSS
T ss_pred EEEEEEEEEECCEeeEccCccccC-------CcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCc
Confidence 999999999999999999874221 0011123456677899999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEEEEEeecCC----CCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC
Q 042277 710 LNERSSRSHSVVTVHVRGKDLK----TGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS 785 (899)
Q Consensus 710 ~N~~SSRSH~IftI~v~~~~~~----~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~ 785 (899)
||..|||||+||+|+|.+.... ......|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||+++.
T Consensus 261 ~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~ 340 (443)
T 2owm_A 261 MNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPK 340 (443)
T ss_dssp SSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC--
T ss_pred CCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccc
Confidence 9999999999999999875421 234568999999999999999999999999999999999999999999998643
Q ss_pred ----------------------CCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcccccc
Q 042277 786 ----------------------PHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAA 843 (899)
Q Consensus 786 ----------------------~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~ 843 (899)
.||||||||||+||||+|||||+|+|||||||+ +++||++||+||+||+.|++.+.
T Consensus 341 ~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~ 418 (443)
T 2owm_A 341 SSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAV 418 (443)
T ss_dssp -----------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCC
T ss_pred ccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccce
Confidence 389999999999999999999999999999996 59999999999999999999987
Q ss_pred ccCcc
Q 042277 844 RSSKE 848 (899)
Q Consensus 844 ~~~~~ 848 (899)
.+..+
T Consensus 419 vN~~d 423 (443)
T 2owm_A 419 VNQVD 423 (443)
T ss_dssp CCCC-
T ss_pred ecccC
Confidence 76534
No 17
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-85 Score=727.24 Aligned_cols=329 Identities=33% Similarity=0.509 Sum_probs=260.7
Q ss_pred hcCCCEEEEEecCCCCCCCCCCCceEEEEccCCeEEecCCCCC------CCCCceeEEeceeeCCCCChhhHHhch-HHH
Q 042277 497 DLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKP------GKDGQRMFKFNKVFGPDATQAEVFSDT-QPL 569 (899)
Q Consensus 497 elkGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~~v~i~~p~~~------~~~~~k~F~FD~VF~~~atQeeVF~~v-~pL 569 (899)
+.+|||||||||||+...+. ..+.+..+...+.+..+... .....+.|.||+||+ +++|++||+.+ +|+
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~pl 96 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAH---EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 96 (359)
T ss_dssp ---CCEEEEEEECCCSSCCT---TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCCEEEEEEcCCCCcccc---cceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHH
Confidence 56899999999999876553 24555555556666554321 233467899999997 68999999985 999
Q ss_pred HHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccC
Q 042277 570 IRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTN 649 (899)
Q Consensus 570 V~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~ 649 (899)
|+++|+|||+||||||||||||||||+|++. ..+++|||||++++||+.+... ..+.|.|+|||+|||||+|+|||++
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~-~~~~~Giipra~~~lF~~~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~ 174 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMMGATE-NYKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLST 174 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSS-CGGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeCCccC-CccchhhHHHHHHHHHHHhhcC-CCCcEEEEEEEEEEecccccccccc
Confidence 9999999999999999999999999999753 3457899999999999987654 4578999999999999999999987
Q ss_pred cchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeec
Q 042277 650 DVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKD 729 (899)
Q Consensus 650 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~ 729 (899)
...... ..........+.|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|....
T Consensus 175 ~~~~~~-------~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~ 247 (359)
T 3nwn_A 175 LPYVGP-------SVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHS 247 (359)
T ss_dssp STTSCT-------TTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-
T ss_pred cccccc-------ccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeec
Confidence 543210 1112233345579999999999999999999999999999999999999999999999999997654
Q ss_pred C--CCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHcc-CCCCCCCCCChhhHhhhhhcCCC
Q 042277 730 L--KTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ-KSPHVPYRNSKLTQVLQSSLGGQ 806 (899)
Q Consensus 730 ~--~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~-k~~hVPYRdSKLT~LLqdsLGGn 806 (899)
. .......|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||++ +..||||||||||+||||+||||
T Consensus 248 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGn 327 (359)
T 3nwn_A 248 RTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGN 327 (359)
T ss_dssp ------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSS
T ss_pred ccccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCC
Confidence 3 33456789999999999999999999999999999999999999999999986 45799999999999999999999
Q ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHhcCc
Q 042277 807 AKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 807 skT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v 838 (899)
|+|+|||||||+..+++||++||+||+||+.|
T Consensus 328 skt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 328 CNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp SEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred ccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999986
No 18
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.1e-84 Score=728.07 Aligned_cols=331 Identities=38% Similarity=0.594 Sum_probs=273.2
Q ss_pred CCCEEEEEecCCCCCCCCCCC-ceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCC--------CChhhHHhch-HH
Q 042277 499 KGNIRVYCRIRPFLPGQTKKQ-TTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPD--------ATQAEVFSDT-QP 568 (899)
Q Consensus 499 kGnIrV~~RVRP~~~~E~~~~-~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~--------atQeeVF~~v-~p 568 (899)
.++|||+|||||+++.|...+ .++.... ++.+.+.+|... ....+.|.||+||++. ++|++||+.+ +|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~~i~~~~~~-~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~p 80 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMS-GSTTTIVNPKQP-KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE 80 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEE-TTEEEECCTTCT-TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEEC-CCcEEEeccCCC-CCCceEEecceEeecCccccccccCcHHHHHHHHHHH
Confidence 479999999999998875432 2332233 346666666432 3356899999999987 8999999985 89
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhcc-CCCeeEEEEEEEEEEecccccccc
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNR-RSSIMYEVAVQMVEIYNEQVRDLL 647 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~V~DLL 647 (899)
+|+++|+|||+||||||||||||||||+|++. ..++|||||++++||..+... ...+.|.|+|||+|||||+|+|||
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~--~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL 158 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE--KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL 158 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCSG--GGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEeeCCCc--cCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcc
Confidence 99999999999999999999999999999642 357899999999999988764 356899999999999999999999
Q ss_pred cCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEe
Q 042277 648 TNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRG 727 (899)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~ 727 (899)
++.... . ..+.+++..|++|.|++++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|+|.+
T Consensus 159 ~~~~~~----------~-l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~ 227 (366)
T 2zfi_A 159 NPKNKG----------N-LRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQ 227 (366)
T ss_dssp CTTTCS----------C-BCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEE
T ss_pred ccccCC----------C-ceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEE
Confidence 875421 1 12455677899999999999999999999999999999999999999999999999999987
Q ss_pred ecCCCC----CceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHcc------------CCCCCCCC
Q 042277 728 KDLKTG----IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ------------KSPHVPYR 791 (899)
Q Consensus 728 ~~~~~~----~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~------------k~~hVPYR 791 (899)
...... ....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.||++ +..|||||
T Consensus 228 ~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyR 307 (366)
T 2zfi_A 228 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 307 (366)
T ss_dssp EEECTTTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGG
T ss_pred ecccCCCCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCccccc
Confidence 654322 24579999999999999999999999999999999999999999999986 35799999
Q ss_pred CChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccc
Q 042277 792 NSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAAR 844 (899)
Q Consensus 792 dSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~ 844 (899)
|||||+||||+|||||+|+|||||||+..+++||++||+||+||+.|++.+..
T Consensus 308 dSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~ 360 (366)
T 2zfi_A 308 DSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360 (366)
T ss_dssp GSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC--------
T ss_pred ccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999988754
No 19
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.6e-84 Score=718.41 Aligned_cols=325 Identities=36% Similarity=0.543 Sum_probs=278.9
Q ss_pred CCCEEEEEecCCCCCCCCCCC--ceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhch-HHHHHHHHc
Q 042277 499 KGNIRVYCRIRPFLPGQTKKQ--TTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSDT-QPLIRSVLD 575 (899)
Q Consensus 499 kGnIrV~~RVRP~~~~E~~~~--~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~v-~pLV~svLd 575 (899)
.|+|+|+|||||+++.|...+ .++.+..++..+... ++.+.|.||+||+++++|++||+.+ .|+|+++|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~-------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 75 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-------DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQ 75 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET-------TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHT
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC-------CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 699999999999999887433 344444444444332 1347899999999999999999985 999999999
Q ss_pred CCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchhhh
Q 042277 576 GYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFWIL 655 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 655 (899)
|||+||||||||||||||||+|++ +++|||||++++||..++.. ....|.|+|||+|||||+|+|||++....
T Consensus 76 G~n~tifAYGqTGSGKTyTM~G~~----~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-- 148 (349)
T 1t5c_A 76 GYNGTIFAYGQTASGKTYTMMGSE----DHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQKM-- 148 (349)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHGGGC-TTEEEEEEEEEEEEETTEEEESSSSSCTT--
T ss_pred CCccceeeecCCCCCCCeEEecCC----CCCchHHHHHHHHHHHHHhC-cCCcEEEEEEEEEEeCCEEEEccCCCCCC--
Confidence 999999999999999999999954 57899999999999988754 45789999999999999999999875421
Q ss_pred hhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCC---
Q 042277 656 AICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKT--- 732 (899)
Q Consensus 656 ~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~--- 732 (899)
....+.++..+|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+...
T Consensus 149 --------~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 220 (349)
T 1t5c_A 149 --------KPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSN 220 (349)
T ss_dssp --------CCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC----
T ss_pred --------CCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcC
Confidence 112345667789999999999999999999999999999999999999999999999999998875432
Q ss_pred --CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCC--CCCCCCCChhhHhhhhhcCCCcc
Q 042277 733 --GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKS--PHVPYRNSKLTQVLQSSLGGQAK 808 (899)
Q Consensus 733 --~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~--~hVPYRdSKLT~LLqdsLGGnsk 808 (899)
+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ .||||||||||+||||+|||||+
T Consensus 221 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnsk 300 (349)
T 1t5c_A 221 CEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAK 300 (349)
T ss_dssp ---CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSE
T ss_pred cCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCce
Confidence 34578999999999999999999999999999999999999999999999764 69999999999999999999999
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccCc
Q 042277 809 TLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSSK 847 (899)
Q Consensus 809 T~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~~ 847 (899)
|+|||||||+ +++||++||+||+||+.|++.|..+..
T Consensus 301 t~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~ 337 (349)
T 1t5c_A 301 TRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEV 337 (349)
T ss_dssp EEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEE
T ss_pred EEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccC
Confidence 9999999997 599999999999999999999876543
No 20
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=2.3e-84 Score=726.54 Aligned_cols=336 Identities=37% Similarity=0.610 Sum_probs=272.1
Q ss_pred hhcCCCEEEEEecCCCCCCCCC--CCceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHH
Q 042277 496 QDLKGNIRVYCRIRPFLPGQTK--KQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRS 572 (899)
Q Consensus 496 qelkGnIrV~~RVRP~~~~E~~--~~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~s 572 (899)
.+.++||||||||||+++.|.. ...++.+.+ +..+++..+.. ....+.|.||+||+++++|++||+. ++|+|++
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~~~~--~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~ 95 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVG-PREVVTRHTLD--SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEE 95 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEET-TTEEEESSSSS--STTCEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcC-CCeEEEecCCC--CCCceEEeccEEeccccchhHHHHHHHHHHHHH
Confidence 4568999999999999987753 344565554 34555544321 2346889999999999999999998 5999999
Q ss_pred HHcCCCeeEeeccccCCcccceeecCCCC-------CCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccc
Q 042277 573 VLDGYNVCIFAYGQTGSGKTYTMSGPSGP-------HEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRD 645 (899)
Q Consensus 573 vLdGyN~cIfAYGQTGSGKTyTM~G~~~~-------~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~D 645 (899)
+|+|||+||||||||||||||||+|++.. ...++|||||++++||+.+... .+.|.|+|||+|||||+|+|
T Consensus 96 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i~D 173 (373)
T 2wbe_C 96 VLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM--EVEYTMRISYLELYNEELCD 173 (373)
T ss_dssp HHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC--CSCEEEEEEEEEEETTEEEE
T ss_pred HhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc--CceEEEEEEEEEEeCCeEEE
Confidence 99999999999999999999999997542 2357899999999999988654 45899999999999999999
Q ss_pred cccCcchhhhhhhhcccccccceecc-CCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEE
Q 042277 646 LLTNDVFWILAICFLDLHTLGIMSTS-QPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVH 724 (899)
Q Consensus 646 LL~~~~~~~~~~~~~~~~~~~i~~~~-~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~ 724 (899)
||++.... ...+..+. ..++++|.|+++++|.|++|++.+|..|.++|++++|.||..|||||+||+|+
T Consensus 174 LL~~~~~~----------~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~ 243 (373)
T 2wbe_C 174 LLSTDDTT----------KIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIV 243 (373)
T ss_dssp SSCTTSCS----------CCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEE
T ss_pred CCCCCCCC----------CceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEE
Confidence 99875321 11122222 34679999999999999999999999999999999999999999999999999
Q ss_pred EEeecCC-C--CCceeeEEEEEecCCCCCcccccch-hhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhh
Q 042277 725 VRGKDLK-T--GIPLHGNLHLVDLAGSERVDRSEAT-GDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQ 800 (899)
Q Consensus 725 v~~~~~~-~--~~~~~skL~lVDLAGSEr~~ks~~~-g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLq 800 (899)
|...... . .....|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.||+++..||||||||||+|||
T Consensus 244 v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLq 323 (373)
T 2wbe_C 244 VHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQ 323 (373)
T ss_dssp EEECTTCTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTH
T ss_pred EEEecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHH
Confidence 9876432 1 2245799999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccC
Q 042277 801 SSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSS 846 (899)
Q Consensus 801 dsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~ 846 (899)
|+|||||+|+|||||||+..+++||++||+||+||+.|++.|..+.
T Consensus 324 dsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~ 369 (373)
T 2wbe_C 324 ESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369 (373)
T ss_dssp HHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCE
T ss_pred HHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecc
Confidence 9999999999999999999999999999999999999999987653
No 21
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=2.4e-84 Score=726.84 Aligned_cols=342 Identities=33% Similarity=0.477 Sum_probs=267.2
Q ss_pred hHHHHHHHHhhhhhhhhhcCCCEEEEEecCCCCCCCCCCC--ceEEEEccCCeEEecCCCCCCC----CCceeEEeceee
Q 042277 480 NYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQ--TTIEYIGENGELIFGNPSKPGK----DGQRMFKFNKVF 553 (899)
Q Consensus 480 ~y~~~~~e~R~l~N~iqelkGnIrV~~RVRP~~~~E~~~~--~~v~~~~~~~~v~i~~p~~~~~----~~~k~F~FD~VF 553 (899)
.|...+..|+.++|+..+ ++||||+|||||+++.|...+ .++.+ .+++.+++..|..... ...+.|.||+||
T Consensus 32 ~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRP~~~~E~~~~~~~~v~~-~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF 109 (387)
T 2heh_A 32 EFRATLECHPLTMTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISI-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFAF 109 (387)
T ss_dssp HHHHHCCCBCCCTTSCCC-CCSEEEEEEECCCCHHHHHTTCCBCEEC-CBSSEEEEEEEEECTTCCEEEEEEEEECSEEE
T ss_pred HHHHhhccCCCccCCCCC-CCCeEEEEECCCCChHHhccCCceEEEE-CCCCEEEEeCCCccccccccccccEEeeeEEE
Confidence 455556668888998877 899999999999998875432 34444 3445666655432111 124689999999
Q ss_pred CCCCChhhHHhc-hHHHHHHHHcCCCeeEeeccccCCcccceeecCCCC--CCCccchhHHHHHHHHHhhhcc-CCCeeE
Q 042277 554 GPDATQAEVFSD-TQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGP--HEEDWGVNYRALNDLFNLSQNR-RSSIMY 629 (899)
Q Consensus 554 ~~~atQeeVF~~-v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~--~~~~~GIipRal~~LF~~~~~~-~~~~~~ 629 (899)
+++++|++||+. ++|+|+++|+|||+||||||||||||||||+|+... ....+||+||++++||..+... ...+.|
T Consensus 110 ~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~ 189 (387)
T 2heh_A 110 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGL 189 (387)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTC
T ss_pred ecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceE
Confidence 999999999998 599999999999999999999999999999996422 2357899999999999987643 235689
Q ss_pred EEEEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccC
Q 042277 630 EVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATA 709 (899)
Q Consensus 630 ~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~ 709 (899)
.|+|||+|||||+|+|||++... + .+.++...|++|.|++++.|.|++|++.+|..|.++|++++|.
T Consensus 190 ~V~vS~~EIYnE~v~DLL~~~~~------------l-~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~ 256 (387)
T 2heh_A 190 EVYVTFFEIYNGKLFDLLNKKAK------------L-RVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTF 256 (387)
T ss_dssp EEEEEEEEEETTEEEETTTTTEE------------C-EEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC------
T ss_pred EEEEEEEEecCCeEEECCCCCcc------------c-eEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCc
Confidence 99999999999999999986531 1 2456677899999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEEEEEeecCCCCCceeeEEEEEecCCCCCccccc-chhhhHHHHHHhhhhHHHHHHHHHHHccCCCCC
Q 042277 710 LNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSE-ATGDRLKEAQHINKSLSALGDVIFALAQKSPHV 788 (899)
Q Consensus 710 ~N~~SSRSH~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~~ks~-~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hV 788 (899)
||..|||||+||+|+|.+.. ...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+++..||
T Consensus 257 ~N~~SSRSH~Ifti~v~~~~-----~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hv 331 (387)
T 2heh_A 257 ANSNSSRSHACFQIILRAKG-----RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT 331 (387)
T ss_dssp ---CGGGSEEEEEEEEESSS-----SEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred CcCCcccceEEEEEEEEECC-----eeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999998652 468999999999999998876 467889999999999999999999999999999
Q ss_pred CCCCChhhHhhhhh-cCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcccc
Q 042277 789 PYRNSKLTQVLQSS-LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELG 841 (899)
Q Consensus 789 PYRdSKLT~LLqds-LGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~ 841 (899)
||||||||+||||| |||||+|+|||||||+..+++||++||+||+||++|..+
T Consensus 332 PYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 332 PFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp CGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999 599999999999999999999999999999999999764
No 22
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=2.8e-84 Score=730.54 Aligned_cols=344 Identities=32% Similarity=0.462 Sum_probs=272.1
Q ss_pred HhHHHHHHHHhhhhhhhhhcCCCEEEEEecCCCCCCCCCCC--ceEEEEccCCeEEecCCCCCCC----CCceeEEecee
Q 042277 479 ENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQTKKQ--TTIEYIGENGELIFGNPSKPGK----DGQRMFKFNKV 552 (899)
Q Consensus 479 ~~y~~~~~e~R~l~N~iqelkGnIrV~~RVRP~~~~E~~~~--~~v~~~~~~~~v~i~~p~~~~~----~~~k~F~FD~V 552 (899)
..|...+..++..+|+..+ .+||+|||||||+++.|...+ .++.+ .+++.+++..|..... ...+.|.||+|
T Consensus 51 ~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRPl~~~E~~~~~~~~v~~-~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~V 128 (410)
T 1v8k_A 51 KEFRVTMECSPLTVTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFA 128 (410)
T ss_dssp HHHHHHHTCCTTTTTCTTS-CCCEEEEEEECCCCHHHHHTTCCBCEEC-CSSSEEEEEEEEECTTCCEEEEEEEEECSEE
T ss_pred HHHHHhhccCCCccCCcCC-CCCeEEEEEeCCCChhHhhcCCccEEEE-CCCCEEEEecCcccccccccccceEEeeeEE
Confidence 4577777778888888776 899999999999998875432 34443 3445666654432111 12468999999
Q ss_pred eCCCCChhhHHhc-hHHHHHHHHcCCCeeEeeccccCCcccceeecCCCC--CCCccchhHHHHHHHHHhhhcc-CCCee
Q 042277 553 FGPDATQAEVFSD-TQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGP--HEEDWGVNYRALNDLFNLSQNR-RSSIM 628 (899)
Q Consensus 553 F~~~atQeeVF~~-v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~--~~~~~GIipRal~~LF~~~~~~-~~~~~ 628 (899)
|+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|+... ....+||+||++++||..+... ...+.
T Consensus 129 F~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~ 208 (410)
T 1v8k_A 129 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLN 208 (410)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTC
T ss_pred EecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCcc
Confidence 9999999999998 599999999999999999999999999999996422 2457899999999999987643 24578
Q ss_pred EEEEEEEEEEecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhccccccc
Q 042277 629 YEVAVQMVEIYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGAT 708 (899)
Q Consensus 629 ~~V~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT 708 (899)
|.|+|||+|||||+|+|||++... + .+.++..+|++|.|++++.|.|++|++.+|..|.++|++++|
T Consensus 209 ~~V~vS~lEIYnE~i~DLL~~~~~------------l-~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T 275 (410)
T 1v8k_A 209 LEVYVTFFEIYNGKVFDLLNKKAK------------L-RVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQT 275 (410)
T ss_dssp CEEEEEEEEEETTEEEETTTTTEE------------E-EEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC----
T ss_pred EEEEEEEEEeeCCEEEECCCCCCC------------c-eEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccc
Confidence 999999999999999999986431 1 245667789999999999999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEEEEeecCCCCCceeeEEEEEecCCCCCccccc-chhhhHHHHHHhhhhHHHHHHHHHHHccCCCC
Q 042277 709 ALNERSSRSHSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSE-ATGDRLKEAQHINKSLSALGDVIFALAQKSPH 787 (899)
Q Consensus 709 ~~N~~SSRSH~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~~ks~-~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~h 787 (899)
.||..|||||+||+|+|.+.. ...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+.+..|
T Consensus 276 ~~N~~SSRSH~Ifti~v~~~~-----~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~h 350 (410)
T 1v8k_A 276 FANSNSSRSHACFQILLRTKG-----RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAH 350 (410)
T ss_dssp ----CCCSSEEEEEEEEESSS-----SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC----
T ss_pred cCCCCCCCceEEEEEEEEeCC-----cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999998652 468999999999999998876 46788899999999999999999999999999
Q ss_pred CCCCCChhhHhhhhh-cCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccc
Q 042277 788 VPYRNSKLTQVLQSS-LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGA 842 (899)
Q Consensus 788 VPYRdSKLT~LLqds-LGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~ 842 (899)
|||||||||+||||| |||||+|+|||||||+..+++||++||+||+||+.|.-.+
T Consensus 351 IPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 351 TPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp --CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred CCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 999999999999999 6999999999999999999999999999999999997544
No 23
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.5e-83 Score=714.16 Aligned_cols=319 Identities=39% Similarity=0.612 Sum_probs=259.9
Q ss_pred CCCEEEEEecCCCCCCCCC--CCceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHHHHc
Q 042277 499 KGNIRVYCRIRPFLPGQTK--KQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSVLD 575 (899)
Q Consensus 499 kGnIrV~~RVRP~~~~E~~--~~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~svLd 575 (899)
.++|||+|||||+++.|.. ...++.+.+..+.+.+. ..+.|.||+||+++++|++||+. +.|+|+++|+
T Consensus 10 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~--------~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~ 81 (344)
T 4a14_A 10 EAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG--------RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFE 81 (344)
T ss_dssp CCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET--------TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred ccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec--------ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHh
Confidence 6899999999999988753 45667776666666552 24789999999999999999998 6999999999
Q ss_pred CCCeeEeeccccCCcccceeecCCCC--CCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcchh
Q 042277 576 GYNVCIFAYGQTGSGKTYTMSGPSGP--HEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDVFW 653 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM~G~~~~--~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~ 653 (899)
|||+||||||||||||||||+|++.. ..+++|||||++++||..++.. ..+.|.|+|||+|||||+|+|||++....
T Consensus 82 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 160 (344)
T 4a14_A 82 GFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGTAS 160 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-TTSEEEEEEEEEEEETTEEEETTSSCCCG
T ss_pred hcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-cceeeEEEEehhhhhHHHHHHHHHhcccc
Confidence 99999999999999999999996532 2467899999999999988765 56789999999999999999999865321
Q ss_pred hhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCC--
Q 042277 654 ILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLK-- 731 (899)
Q Consensus 654 ~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~-- 731 (899)
....+.++..+|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+..
T Consensus 161 ----------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~ 230 (344)
T 4a14_A 161 ----------RDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPS 230 (344)
T ss_dssp ----------GGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC----
T ss_pred ----------ccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcc
Confidence 11234566778999999999999999999999999999999999999999999999999999876532
Q ss_pred ------CCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC---CCCCCCCCChhhHhhhhh
Q 042277 732 ------TGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK---SPHVPYRNSKLTQVLQSS 802 (899)
Q Consensus 732 ------~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k---~~hVPYRdSKLT~LLqds 802 (899)
.+....|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||+++ ..||||||||||+||||+
T Consensus 231 ~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqds 310 (344)
T 4a14_A 231 RLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDS 310 (344)
T ss_dssp --------CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTS
T ss_pred cCCCccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhh
Confidence 23456899999999999999999999999999999999999999999999863 469999999999999999
Q ss_pred cCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 042277 803 LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVS 836 (899)
Q Consensus 803 LGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k 836 (899)
|||||+|+||+||||+..+++||++||+||+||+
T Consensus 311 LgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 311 LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 9999999999999999999999999999999985
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.1e-83 Score=717.16 Aligned_cols=333 Identities=32% Similarity=0.499 Sum_probs=260.8
Q ss_pred hhhhhcCCCEEEEEecCCCCCCCCCCCceEEEEccCCeEEecCCCCC------CCCCceeEEeceeeCCCCChhhHHhch
Q 042277 493 NEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKP------GKDGQRMFKFNKVFGPDATQAEVFSDT 566 (899)
Q Consensus 493 N~iqelkGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~~v~i~~p~~~------~~~~~k~F~FD~VF~~~atQeeVF~~v 566 (899)
-.-.+++|||||||||||+...+ ...+.+..+++.+.+..+... .....+.|.||+|| ++++|++||+.+
T Consensus 16 ~~~~~~~g~IrV~vRvRP~~~~~---~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf-~~~sQ~~Vy~~~ 91 (358)
T 2nr8_A 16 PRGSGTRKKVHAFVRVKPTDDFA---HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVL-HDASQDLVYETV 91 (358)
T ss_dssp -------CCEEEEEEECCCSSCC---TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEE-ESCCHHHHHHHH
T ss_pred cCCCCCCCCeEEEEEcCCCCCCc---cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeec-CCcCHHHHHHHH
Confidence 34568899999999999986543 245666666667776655322 12345789999999 589999999985
Q ss_pred -HHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccc
Q 042277 567 -QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRD 645 (899)
Q Consensus 567 -~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~D 645 (899)
+|+|+++|+|||+||||||||||||||||+|++. ....+|||||++++||..++.. ..+.|.|+|||+|||||+|+|
T Consensus 92 ~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~-~~~~~Giipra~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~D 169 (358)
T 2nr8_A 92 AKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATE-NYKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFD 169 (358)
T ss_dssp THHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSS-CGGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCCceEeccccc-ccccCCcHHHHHHHHHHHHhhc-CCceEEEEEEEEEEeCCeeeE
Confidence 9999999999999999999999999999999653 2346899999999999988764 356899999999999999999
Q ss_pred cccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEE
Q 042277 646 LLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHV 725 (899)
Q Consensus 646 LL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v 725 (899)
||++...... ....+.....+.|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|
T Consensus 170 LL~~~~~~~~-------~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v 242 (358)
T 2nr8_A 170 LLSTLPYVGP-------SVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYL 242 (358)
T ss_dssp TTSSSTTSCT-------TTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEE
T ss_pred CcCCccccCc-------cCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEE
Confidence 9987542100 011122223348999999999999999999999999999999999999999999999999999
Q ss_pred EeecC--CCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccC-CCCCCCCCChhhHhhhhh
Q 042277 726 RGKDL--KTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQK-SPHVPYRNSKLTQVLQSS 802 (899)
Q Consensus 726 ~~~~~--~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-~~hVPYRdSKLT~LLqds 802 (899)
.+.+. .......|+|+|||||||||++++++.|+|++|+.+||+||++||+||.||+++ ..||||||||||+||||+
T Consensus 243 ~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqds 322 (358)
T 2nr8_A 243 EAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDS 322 (358)
T ss_dssp EEC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHH
T ss_pred EEEeccCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHh
Confidence 87643 234456899999999999999999999999999999999999999999999874 579999999999999999
Q ss_pred cCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCc
Q 042277 803 LGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGV 838 (899)
Q Consensus 803 LGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v 838 (899)
|||||+|+|||||||+..+++||++||+||+||+.|
T Consensus 323 LgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 323 LGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp HSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred cCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999976
No 25
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=3.2e-83 Score=713.23 Aligned_cols=323 Identities=40% Similarity=0.584 Sum_probs=252.4
Q ss_pred CCEEEEEecCCCCCCCCCCC-ceEEEEccCCeEEecCCCC-----CCCCCceeEEeceee--------CCCCChhhHHhc
Q 042277 500 GNIRVYCRIRPFLPGQTKKQ-TTIEYIGENGELIFGNPSK-----PGKDGQRMFKFNKVF--------GPDATQAEVFSD 565 (899)
Q Consensus 500 GnIrV~~RVRP~~~~E~~~~-~~v~~~~~~~~v~i~~p~~-----~~~~~~k~F~FD~VF--------~~~atQeeVF~~ 565 (899)
.||+|+|||||+++.|...+ .++.... ++.+++..+.. ......+.|.||+|| ++.++|++||+.
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~ 79 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVD-ANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKC 79 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEE-TTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeC-CCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHH
Confidence 37999999999998886433 2333333 34555544321 122346899999999 456899999998
Q ss_pred h-HHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhc-cCCCeeEEEEEEEEEEecccc
Q 042277 566 T-QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQN-RRSSIMYEVAVQMVEIYNEQV 643 (899)
Q Consensus 566 v-~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~V 643 (899)
+ .|+|+++|+|||+||||||||||||||||+|++ +++|||||++++||..++. ....+.|.|.|||+|||||+|
T Consensus 80 ~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~----~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i 155 (354)
T 3gbj_A 80 LGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA----DQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKV 155 (354)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCS----SSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEE
T ss_pred hhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCC----CCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCee
Confidence 5 999999999999999999999999999999954 5789999999999997754 446789999999999999999
Q ss_pred cccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEE
Q 042277 644 RDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTV 723 (899)
Q Consensus 644 ~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI 723 (899)
+|||++.... ....+.+++..|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|
T Consensus 156 ~DLL~~~~~~----------~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 225 (354)
T 3gbj_A 156 RDLLDPKGSR----------QTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKI 225 (354)
T ss_dssp EETTC----------------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEE
T ss_pred eEccCCCCCC----------cceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEE
Confidence 9999875321 111234566789999999999999999999999999999999999999999999999999
Q ss_pred EEEeecC--CC--CCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHcc------CCCCCCCCCC
Q 042277 724 HVRGKDL--KT--GIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ------KSPHVPYRNS 793 (899)
Q Consensus 724 ~v~~~~~--~~--~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~------k~~hVPYRdS 793 (899)
+|.+... .. .....|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||++ +..|||||||
T Consensus 226 ~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdS 305 (354)
T 3gbj_A 226 TLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDS 305 (354)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGS
T ss_pred EEEEEecccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 9986532 12 234679999999999999999999999999999999999999999999985 4579999999
Q ss_pred hhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcC
Q 042277 794 KLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSG 837 (899)
Q Consensus 794 KLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~ 837 (899)
|||+||||+|||||+|+|||||||+..+++||++||+||.||+.
T Consensus 306 kLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 306 VLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999974
No 26
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=6.1e-83 Score=711.64 Aligned_cols=327 Identities=28% Similarity=0.437 Sum_probs=276.9
Q ss_pred CEEEEEecCCCCCCCCCC--CceEEEEccCCeEEecCCCCCCC----CCceeEEeceeeCCCCChhhHHhc-hHHHHHHH
Q 042277 501 NIRVYCRIRPFLPGQTKK--QTTIEYIGENGELIFGNPSKPGK----DGQRMFKFNKVFGPDATQAEVFSD-TQPLIRSV 573 (899)
Q Consensus 501 nIrV~~RVRP~~~~E~~~--~~~v~~~~~~~~v~i~~p~~~~~----~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~sv 573 (899)
||||||||||+++.|... ..++.+. ++..+.+..|..... ...+.|.||+||+++++|++||+. ++|+|+++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~-~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 79 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVK-NNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDL 79 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEE-ETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEEC-CCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhh
Confidence 799999999999887543 3445544 455777765532111 124689999999999999999998 69999999
Q ss_pred Hc-CCCeeEeeccccCCcccceeecCCC-CCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccccccccCcc
Q 042277 574 LD-GYNVCIFAYGQTGSGKTYTMSGPSG-PHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQVRDLLTNDV 651 (899)
Q Consensus 574 Ld-GyN~cIfAYGQTGSGKTyTM~G~~~-~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~ 651 (899)
++ |||+||||||||||||||||+|+.. ...+.+|||||++++||..++.....+.|.|+|||+|||||+|+|||.+..
T Consensus 80 ~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 159 (360)
T 1ry6_A 80 YENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK 159 (360)
T ss_dssp HHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC--
T ss_pred ccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc
Confidence 96 9999999999999999999999752 224678999999999999988776778899999999999999999998753
Q ss_pred hhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCC
Q 042277 652 FWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLK 731 (899)
Q Consensus 652 ~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~ 731 (899)
.. ...++...|++|.|++++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|+|.+.+
T Consensus 160 ~~-------------~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-- 224 (360)
T 1ry6_A 160 MV-------------AALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-- 224 (360)
T ss_dssp ----------------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT--
T ss_pred cc-------------eeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc--
Confidence 21 123456688999999999999999999999999999999999999999999999999998654
Q ss_pred CCCceeeEEEEEecCCCCCcccccchh-hhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcceE
Q 042277 732 TGIPLHGNLHLVDLAGSERVDRSEATG-DRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTL 810 (899)
Q Consensus 732 ~~~~~~skL~lVDLAGSEr~~ks~~~g-~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnskT~ 810 (899)
.....|+|+|||||||||..++++.| .+++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||+|+
T Consensus 225 -~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 303 (360)
T 1ry6_A 225 -KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSI 303 (360)
T ss_dssp -TTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEE
T ss_pred -CCcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEE
Confidence 34568999999999999999998876 5789999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhcCccccccc
Q 042277 811 MFVQLNPDVNSYSESLSTLKFAERVSGVELGAAR 844 (899)
Q Consensus 811 mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~ 844 (899)
|||||||+..+++||++||+||+||++|++.+..
T Consensus 304 mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~ 337 (360)
T 1ry6_A 304 MIANISPTISCCEQTLNTLRYSSRVKNKGNSKLE 337 (360)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHCC-------
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhcccCccc
Confidence 9999999999999999999999999999987654
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=5.5e-82 Score=700.12 Aligned_cols=314 Identities=31% Similarity=0.508 Sum_probs=247.0
Q ss_pred hcCCCEEEEEecCCCCCCCCCC-CceEEEEc--cCCeEEecCCCCCCCCCceeEEeceeeCCCCChhhHHhc-hHHHHHH
Q 042277 497 DLKGNIRVYCRIRPFLPGQTKK-QTTIEYIG--ENGELIFGNPSKPGKDGQRMFKFNKVFGPDATQAEVFSD-TQPLIRS 572 (899)
Q Consensus 497 elkGnIrV~~RVRP~~~~E~~~-~~~v~~~~--~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVF~~-v~pLV~s 572 (899)
+-.++|||+|||||+.+.+... ..++.+.. ++..+.+ ..+.|.||+||+++++|++||+. +.|+|++
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~---------~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~ 89 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIV---------DQNEFHFDHAFPATISQDEMYQALILPLVDK 89 (344)
T ss_dssp CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEE---------TTEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEe---------cCcEEEcceEECCCCCHHHHHHhhccchhhH
Confidence 3468999999999998766432 34455443 2223332 24789999999999999999998 6999999
Q ss_pred HHcCCCeeEeeccccCCcccceeecCCCC--CCCccchhHHHHHHHHHhhhccCC--CeeEEEEEEEEEEeccccccccc
Q 042277 573 VLDGYNVCIFAYGQTGSGKTYTMSGPSGP--HEEDWGVNYRALNDLFNLSQNRRS--SIMYEVAVQMVEIYNEQVRDLLT 648 (899)
Q Consensus 573 vLdGyN~cIfAYGQTGSGKTyTM~G~~~~--~~~~~GIipRal~~LF~~~~~~~~--~~~~~V~vS~lEIYnE~V~DLL~ 648 (899)
+|+|||+||||||||||||||||.|.+.. .++++|||||++++||..+..... .+.|.|+|||+|||||+|+|||+
T Consensus 90 ~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 169 (344)
T 3dc4_A 90 LLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG 169 (344)
T ss_dssp HHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTS
T ss_pred hhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccC
Confidence 99999999999999999999999986432 246789999999999998865433 35799999999999999999998
Q ss_pred CcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEee
Q 042277 649 NDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGK 728 (899)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~ 728 (899)
+.... +..+..+.++++++|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.
T Consensus 170 ~~~~~------------------~~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~ 231 (344)
T 3dc4_A 170 STPHM------------------PMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK 231 (344)
T ss_dssp SCTTS------------------BCCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS
T ss_pred CCCCC------------------ccccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec
Confidence 75421 011233568999999999999999999999999999999999999999999999753
Q ss_pred cCCCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcc
Q 042277 729 DLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAK 808 (899)
Q Consensus 729 ~~~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnsk 808 (899)
...|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+
T Consensus 232 ------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnsk 305 (344)
T 3dc4_A 232 ------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSY 305 (344)
T ss_dssp ------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCE
T ss_pred ------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHhcCcccccc
Q 042277 809 TLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAA 843 (899)
Q Consensus 809 T~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~ 843 (899)
|+||+||||+..+++||++||+||+||+.....++
T Consensus 306 t~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 306 LTFLACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999999999998766543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=2.4e-78 Score=731.76 Aligned_cols=335 Identities=40% Similarity=0.615 Sum_probs=264.8
Q ss_pred hhhhhhhcCCCEEEEEecC----CCCCCCCC-CCceEEEEc-------cCCeEEecCCCCCCCCCceeEEeceeeCCCCC
Q 042277 491 LFNEVQDLKGNIRVYCRIR----PFLPGQTK-KQTTIEYIG-------ENGELIFGNPSKPGKDGQRMFKFNKVFGPDAT 558 (899)
Q Consensus 491 l~N~iqelkGnIrV~~RVR----P~~~~E~~-~~~~v~~~~-------~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~at 558 (899)
.-.+++.+.+++||||||| |.+..|.. ...++.+.. ..+++++..+. .+....+.|.||+||+++++
T Consensus 365 Aq~~~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~fd~vf~~~~~ 443 (715)
T 4h1g_A 365 AQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNI-NNNFSNLRFLFDKIFEREQS 443 (715)
T ss_dssp HHHHHSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEE-TTEEEEEEEECSEEECSSCC
T ss_pred HHHHHHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCC-CCCCCCeEEEeceEeCCCCC
Confidence 3456778899999999999 44444433 223333322 12355555543 33445789999999999999
Q ss_pred hhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhc-cCCCeeEEEEEEEEE
Q 042277 559 QAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQN-RRSSIMYEVAVQMVE 637 (899)
Q Consensus 559 QeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lE 637 (899)
|++||+.+.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.++. ......|.|+|||+|
T Consensus 444 q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~------~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~E 517 (715)
T 4h1g_A 444 NDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP------TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIE 517 (715)
T ss_dssp HHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhccCCC------CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEE
Confidence 9999999999999999999999999999999999999994 469999999999998765 345678999999999
Q ss_pred EecccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCc
Q 042277 638 IYNEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRS 717 (899)
Q Consensus 638 IYnE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRS 717 (899)
||||+|+|||++.... .....+...+..++++|.|++++.|.|.+|++.+|..|.++|++++|.+|.+||||
T Consensus 518 iyne~i~DLl~~~~~~--------~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRS 589 (715)
T 4h1g_A 518 IYNEAIVDLLNPKIDP--------NTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRS 589 (715)
T ss_dssp EETTEEEESSSCCCCT--------TCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGS
T ss_pred EECCEEEECCCCCCCC--------CCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccc
Confidence 9999999999875422 12233444555567999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEeecCCCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHcc-CCCCCCCCCChhh
Q 042277 718 HSVVTVHVRGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQ-KSPHVPYRNSKLT 796 (899)
Q Consensus 718 H~IftI~v~~~~~~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~-k~~hVPYRdSKLT 796 (899)
|+||+|+|.+.+..++....|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.+|+. +..||||||||||
T Consensus 590 H~i~~i~~~~~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT 669 (715)
T 4h1g_A 590 HSIFIIDLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLT 669 (715)
T ss_dssp EEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHH
T ss_pred cEEEEEEEEEEecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHH
Confidence 999999999988888888899999999999999999999999999999999999999999999985 4589999999999
Q ss_pred HhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccc
Q 042277 797 QVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVEL 840 (899)
Q Consensus 797 ~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~ 840 (899)
|||||||||||+|+|||||||+..+++||++||+||+||++|++
T Consensus 670 ~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~~ 713 (715)
T 4h1g_A 670 YLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713 (715)
T ss_dssp HHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred HHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhcccee
Confidence 99999999999999999999999999999999999999999864
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-34 Score=300.37 Aligned_cols=278 Identities=18% Similarity=0.228 Sum_probs=195.1
Q ss_pred HhHHHHHHHHhhhhhhhhhcCCCEEEEEecCCCC-CCCCCCCce-EEEEccCCeEEecCCCCCCCCCceeEEeceeeCCC
Q 042277 479 ENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFL-PGQTKKQTT-IEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPD 556 (899)
Q Consensus 479 ~~y~~~~~e~R~l~N~iqelkGnIrV~~RVRP~~-~~E~~~~~~-v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~ 556 (899)
+.|.++...||+|||.|+||||||||||||||.. | ..+ +.+.. +.+.+ +. ..+.|.||+||+|.
T Consensus 3 dK~eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p-----~~~~v~y~~--~~I~v-~~------~~k~f~FDRVf~p~ 68 (298)
T 2o0a_A 3 STVEKELLRSRRLENSIIEQKGTMRCYAYVMEQNLP-----ENLLFDYEN--GVITQ-GL------SEHVYKFNRVIPHL 68 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSC-----TTEEEETTT--TEEEE-TT------TCCEEECSEEEETT
T ss_pred hHHHHHHHHHHHHHhHHHHhhCceEEEEEeccccCC-----ccceeecCc--cceee-cC------CCceEEeeeEECcc
Confidence 4566777889999999999999999999999965 4 222 33333 33555 32 12789999999999
Q ss_pred CChh--hHHhchHHHHHHHHc-CCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhc-cCCCeeEEEE
Q 042277 557 ATQA--EVFSDTQPLIRSVLD-GYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQN-RRSSIMYEVA 632 (899)
Q Consensus 557 atQe--eVF~~v~pLV~svLd-GyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~ 632 (899)
++|+ +||++++++|++||+ |||+||||||||||||| |||+..+|..... .. |.|.++
T Consensus 69 s~Qe~~~vf~E~~~~i~scLd~GyNvcIfSyGQTGsGKT-----------------~ral~q~f~~~~~~~~--~~Y~~t 129 (298)
T 2o0a_A 69 KVSEDKFFTQEYSVYHDMCLNQKKNFNLISLSTTPHGSL-----------------RESLIKFLAEKDTIYQ--KQYVIT 129 (298)
T ss_dssp TSCHHHHHHHTTHHHHHHHHHTTCCEEEEEECSSCCHHH-----------------HHHHHHHHHSTTSHHH--HHEEEE
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcc-----------------HHHHHHHHHHhhhhcc--cceEEE
Confidence 9999 999999999999999 99999999999999999 8999999987644 33 899999
Q ss_pred EEEEEEe-cccccccccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCC-HHHHHHHHHHHHhcccccccCC
Q 042277 633 VQMVEIY-NEQVRDLLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTS-TEDVLELMDIGLKNRAIGATAL 710 (899)
Q Consensus 633 vS~lEIY-nE~V~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s-~ee~~~lL~~g~~~R~~~sT~~ 710 (899)
+||+||| ||.++|||...+.. ....|. .+..++..|.|++.++|.+ .+|+..++..+. .+.+
T Consensus 130 lq~veLy~Ne~~~DLL~~~~~~---------~k~eIk-~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~------~~~~ 193 (298)
T 2o0a_A 130 LQFVFLSDDEFSQDMLLDYSHN---------DKDSIK-LKFEKHSISLDSKLVIIENGLEDLPLNFSCDE------HPNL 193 (298)
T ss_dssp EEEEEEECC-CEEETTSCCC---------------CE-EEECSSCEEEESCCEEESSGGGGSCTTTTCC-----------
T ss_pred EEEEEEecCCchHHhcCCCCCC---------CcceEE-ecCCCCEEecccEEEEccccHHHHHHHhhccc------cccc
Confidence 9999999 99999999744321 112232 3356778999999999999 899887772111 1122
Q ss_pred CCCCCCceeEEEEEEEeecCCCC---CceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCC
Q 042277 711 NERSSRSHSVVTVHVRGKDLKTG---IPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPH 787 (899)
Q Consensus 711 N~~SSRSH~IftI~v~~~~~~~~---~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~h 787 (899)
|. +.-.|+.+.+...+.+.. ....-.++|+.+.-.. +...|.+.+ ..+
T Consensus 194 ~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~~--------------------~~~~l~~~~---~~~--- 244 (298)
T 2o0a_A 194 PH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKSI---FKK--- 244 (298)
T ss_dssp -----CEEEEEEEEEEESCC-------CCCEEEEEEEECSHH--------------------HHHHHHHHH---HTC---
T ss_pred CC---CCceEEEEEEecCcccccccCCCCceEEEEEEeCCHH--------------------HHHHHHhhc---ccc---
Confidence 22 346677777776443221 1233457888765211 233333322 222
Q ss_pred CCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccc
Q 042277 788 VPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVEL 840 (899)
Q Consensus 788 VPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~ 840 (899)
-+-.|+++-+|+.-|- ..|.++++++.-..... .-|..++++..+.+
T Consensus 245 -~~~~spi~~il~~ll~-~tks~~~~~l~~~~~~~----~lL~~s~~i~~~~~ 291 (298)
T 2o0a_A 245 -ESCETPIALVLKKLIS-DTKSFFLLNLNDSKNVN----KLLTISEEVQTQLC 291 (298)
T ss_dssp --CCCSHHHHHHHHHHH-HSBCEEEEEECCGGGHH----HHHHHHHHHHHHTC
T ss_pred -cccCCcHHHHHHHHHh-cCcceEEEEecCCCchh----HHHHHHHHhhcccC
Confidence 3567899999987764 57888999997543322 36777777776654
No 30
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.94 E-value=2e-27 Score=233.03 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcC---Cccc-cccccCCCcchhhhhHHHHHHHHhh
Q 042277 27 KQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKP---ASVD-EANYSYNSSMSRSGKIARFLTTLGK 102 (899)
Q Consensus 27 ~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~P---Gsv~-ki~~~~~~~~~~~ENI~~FL~a~~~ 102 (899)
.++.|+++||++++|....+++++.++|.++||||+|||+|+|+|+| |+|+ ||+.+ ...|+++|||++||+||+.
T Consensus 9 ~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~-~~~f~~~eNI~~FL~ac~~ 87 (144)
T 1ujo_A 9 ELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPP-SMVFKQMEQVAQFLKAAED 87 (144)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCC-CSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeecCC-CchhHHHHHHHHHHHHHHH
Confidence 45679999999999986544567778999999999999999999999 9999 99854 4668899999999999999
Q ss_pred cCCCc---ccccccccCC-cchHHHHHHHHHHHHHhcCC
Q 042277 103 LGISR---FEMSDLEKGS-MKPVINCLLNLRAEYITGGD 137 (899)
Q Consensus 103 ~Gvp~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g~ 137 (899)
||||. |+|+||||++ +.+|+.||+||++++.++|.
T Consensus 88 ~Gv~~~~lF~t~DL~e~kn~~~V~~cL~aL~~~a~~~~~ 126 (144)
T 1ujo_A 88 YGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAVTKND 126 (144)
T ss_dssp HTCCSSSCCCHHHHHTCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred cCcCccccCChhHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 99996 9999999999 99999999999999998863
No 31
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=4.6e-27 Score=233.07 Aligned_cols=113 Identities=27% Similarity=0.443 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcC---CccccccccCCCcchhhhhHHHHHHHHhhc
Q 042277 27 KQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKP---ASVDEANYSYNSSMSRSGKIARFLTTLGKL 103 (899)
Q Consensus 27 ~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~P---Gsv~ki~~~~~~~~~~~ENI~~FL~a~~~~ 103 (899)
.++.++++||++++|....+++++.++|.++||||+|||+|+|+|+| |+|+||+.+ ...|+++|||++||+||+.|
T Consensus 17 ~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn~~-~~~F~~~eNI~~FL~ac~~~ 95 (155)
T 1wym_A 17 DLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQAS-TMAFKQMEQISQFLQAAERY 95 (155)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCCCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcCcccCC-CccccHHHHHHHHHHHHHHc
Confidence 56679999999999985444467789999999999999999999999 999999965 46688999999999999999
Q ss_pred CCCc---ccccccccCC-cchHHHHHHHHHHHHHhcCCCCcc
Q 042277 104 GISR---FEMSDLEKGS-MKPVINCLLNLRAEYITGGDIRPL 141 (899)
Q Consensus 104 Gvp~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g~~~~~ 141 (899)
|||. |+|+|||||+ +.+|+.||+||++++.++|. |++
T Consensus 96 Gv~~~~lF~t~DL~e~kn~~~Vi~cL~aL~~~a~~~~~-gp~ 136 (155)
T 1wym_A 96 GINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDD-GLF 136 (155)
T ss_dssp TCCTTTCCCHHHHHTCSCHHHHHHHHHHHHHHHTTCSS-SCC
T ss_pred CCCccccCChHHHHhcCCHHHHHHHHHHHHHHHHHCCC-CCc
Confidence 9997 9999999999 99999999999999999876 553
No 32
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.94 E-value=4.2e-27 Score=225.43 Aligned_cols=110 Identities=26% Similarity=0.438 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhcC-CC-CCCCCCChHHH-HHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhh
Q 042277 26 AKQRALLIEWLNSILP-NL-NFPIKASDEEL-RACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGK 102 (899)
Q Consensus 26 a~r~~e~~~Wi~~~~g-~~-~~~~~~~~e~f-~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~ 102 (899)
+.++.|+++||++++| .. ..|. ++.++| +++||||+|||+|+|+|+||+|+||+..|...|+++|||++||+||+.
T Consensus 11 ~~~~~e~~~WI~~~~~L~~~~~~~-~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~ 89 (126)
T 2l3g_A 11 MNSAEQTVTWLITLGVLESPKKTI-SDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEPRSESECLSNIREFLRGCGA 89 (126)
T ss_dssp CCHHHHHHHHHHHTTSSCCCSSCC-SCHHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCCCC-CChhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHH
Confidence 3578899999999976 32 2232 455666 899999999999999999999999987777778999999999999999
Q ss_pred -cCCCcccccccccCC-cchHHHHHHHHHHHHHhcC
Q 042277 103 -LGISRFEMSDLEKGS-MKPVINCLLNLRAEYITGG 136 (899)
Q Consensus 103 -~Gvp~F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g 136 (899)
||++.|+|+|||||+ +++|+.||+||++++...|
T Consensus 90 ~~g~~lF~t~DL~e~kn~~~V~~cL~aL~~~~~~~G 125 (126)
T 2l3g_A 90 SLRLETFDANDLYQGQNFNKVLSSLVTLNKVTADIG 125 (126)
T ss_dssp TSCCCCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCccCHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999 9999999999999988765
No 33
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=5.2e-27 Score=221.94 Aligned_cols=109 Identities=39% Similarity=0.543 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHHHccCC-CCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCccccccccC
Q 042277 768 NKSLSALGDVIFALAQKS-PHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAARSS 846 (899)
Q Consensus 768 NkSLsaLg~VI~aLa~k~-~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~~~~ 846 (899)
|+||++||+||.+|+++. .||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|.+.+..+.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999864 7999999999999999999999999999999999999999999999999999999887654
Q ss_pred cchhh-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 847 KEGRD-----VRELMEQVASLKDTIAKKDDEIERL 876 (899)
Q Consensus 847 ~~~~~-----~~~L~eqv~~Lk~~i~~~~~e~e~l 876 (899)
..... ++...+++..|++.++.++.|+++.
T Consensus 81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32221 2223334445555555555555543
No 34
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=1.2e-27 Score=219.66 Aligned_cols=82 Identities=44% Similarity=0.633 Sum_probs=77.8
Q ss_pred HHhhhhHHHHHHHHHHHccC-CCCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcccccc
Q 042277 765 QHINKSLSALGDVIFALAQK-SPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELGAA 843 (899)
Q Consensus 765 ~~INkSLsaLg~VI~aLa~k-~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~~~ 843 (899)
.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|++.|.+.+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 57999999999999999987 68999999999999999999999999999999999999999999999999999999887
Q ss_pred ccC
Q 042277 844 RSS 846 (899)
Q Consensus 844 ~~~ 846 (899)
.+.
T Consensus 82 ~n~ 84 (100)
T 2kin_B 82 VNL 84 (100)
T ss_dssp CEE
T ss_pred ecc
Confidence 653
No 35
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.93 E-value=1.8e-26 Score=229.80 Aligned_cols=110 Identities=20% Similarity=0.352 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhh
Q 042277 23 EVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGK 102 (899)
Q Consensus 23 ~~~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~ 102 (899)
.+...|+.|+++||++++|.. +| ++++|.++||||+|||+|+|+|+||+|+||+..+...|+++|||++||+||+.
T Consensus 7 ~eyl~~~~e~~~WIe~~l~~~-l~---~~~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~ 82 (159)
T 1p2x_A 7 YDYLCRVDEAKKWIEECLGTD-LG---PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHG 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC-CC---CGGGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CC---ChHHHHHHHcchHHHHHHHHHhCCCCccccccccCCcchHHHHHHHHHHHHHH
Confidence 455678899999999999974 33 56789999999999999999999999999987666778999999999999999
Q ss_pred cCCCc---ccccccccCC-cchHHHHHHHHHHHHHhcC
Q 042277 103 LGISR---FEMSDLEKGS-MKPVINCLLNLRAEYITGG 136 (899)
Q Consensus 103 ~Gvp~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g 136 (899)
||||. |+|+|||||+ +.+|+.||+||.+++.+.|
T Consensus 83 ~Gv~~~~lF~~~DL~e~kn~~~Vi~~L~aL~~~~~~~g 120 (159)
T 1p2x_A 83 IGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQD 120 (159)
T ss_dssp TTCCGGGCCCHHHHSSCSCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCcccccCHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Confidence 99996 9999999999 9999999999999998876
No 36
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.93 E-value=6.2e-27 Score=218.85 Aligned_cols=101 Identities=24% Similarity=0.432 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCCCc
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISR 107 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gvp~ 107 (899)
++.|+++||++++|... +++|.++||||+|||+|+|+|+||+|+||+.++ ..|+++|||++||+||+.||||.
T Consensus 4 ~e~e~~~WIe~~l~~~~------~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~~~~-~~f~~~eNI~~Fl~a~~~~Gv~~ 76 (108)
T 1h67_A 4 TERQLRVWIEGATGRRI------GDNFMDGLKDGVILCELINKLQPGSVQKVNDPV-QNWHKLENIGNFLRAIKHYGVKP 76 (108)
T ss_dssp SSHHHHHHHHHHHSCCC------CSCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTT-SSHHHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHhCCCC------cHHHHHHHccHHHHHHHHHHhCCCCcccccccc-cchHHHHHHHHHHHHHHHcCCCc
Confidence 46799999999999742 257999999999999999999999999999655 56889999999999999999994
Q ss_pred ---ccccccccCC-cchHHHHHHHHHHHHHhc
Q 042277 108 ---FEMSDLEKGS-MKPVINCLLNLRAEYITG 135 (899)
Q Consensus 108 ---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~ 135 (899)
|+++|||||+ +++|+.||+||++++.++
T Consensus 77 ~~lF~~~DL~e~kn~~~V~~~l~aL~~~a~~k 108 (108)
T 1h67_A 77 HDIFEANDLFENTNHTQVQSTLIALASQAKTK 108 (108)
T ss_dssp GGSCCHHHHHHTCCSHHHHHHHHHHHHHHHHC
T ss_pred ccccChhHHHhCCChHHHHHHHHHHHHHHccC
Confidence 9999999999 999999999999998764
No 37
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.93 E-value=2.5e-26 Score=223.18 Aligned_cols=107 Identities=26% Similarity=0.430 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCCC
Q 042277 27 KQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGIS 106 (899)
Q Consensus 27 ~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gvp 106 (899)
.++.++++||++++|... +++|.++||||+|||+|+|+|+||+|+||+.++ ..|+++|||++||+||+.||||
T Consensus 17 ~~~~e~~~WIe~~l~~~~------~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~~~~-~~f~~~eNI~~Fl~a~~~~Gv~ 89 (136)
T 1wyp_A 17 QREQELREWIEGVTGRRI------GNNFMDGLKDGIILCEFINKLQPGSVKKINEST-QNWHQLENIGNFIKAITKYGVK 89 (136)
T ss_dssp HHHHHHHHHHHHHTCCCC------CSCTTHHHHTSHHHHHHHHHHSTTSSSCCCCSS-CSHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCCC------cHHHHHHHccHHhHHHHHHhhCCCCcccccccc-cchHHHHHHHHHHHHHHHcCCC
Confidence 466799999999999742 257999999999999999999999999998655 5688999999999999999999
Q ss_pred c---ccccccccCC-cchHHHHHHHHHHHHHhcCCCCcc
Q 042277 107 R---FEMSDLEKGS-MKPVINCLLNLRAEYITGGDIRPL 141 (899)
Q Consensus 107 ~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g~~~~~ 141 (899)
. |+++|||||+ +++|+.||+||.+++.++| .||+
T Consensus 90 ~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~~~g-~~p~ 127 (136)
T 1wyp_A 90 PHDIFEANDLFENTNHTQVQSTLLALASMAKTKG-NKVN 127 (136)
T ss_dssp GGGCCCHHHHHSCSCSHHHHHHHHHHHHHHHHHT-CCCC
T ss_pred cccccCchHHhcCCCHHHHHHHHHHHHHHHHHCC-CCCc
Confidence 4 9999999999 9999999999999999987 5553
No 38
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.92 E-value=9e-26 Score=221.66 Aligned_cols=103 Identities=27% Similarity=0.452 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCCCc
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISR 107 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gvp~ 107 (899)
++.++++||++++|... +++|.++|+||+|||+|+|+|+||+|+||+.++ ..|+++|||++||+||+.||||.
T Consensus 18 ~~~e~~~WIe~~l~~~i------~~~l~~~L~DGvvLCkL~N~l~P~~v~kin~~~-~~f~~~eNI~~FL~a~~~~Gv~~ 90 (146)
T 1wyn_A 18 KEAELRTWIEGLTGLSI------GPDFQKGLKDGTILCTLMNKLQPGSVPKINRSM-QNWHQLENLSNFIKAMVSYGMNP 90 (146)
T ss_dssp HHHHHHHHHHHHHCCCC------CSCHHHHHHTTSHHHHHHHHHCTTSCSCCCCSS-CHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHhCCCC------cHHHHHHHccHHHHHHHHHHhCCCCcccccccc-ccccHHHHHHHHHHHHHHcCCCc
Confidence 55699999999999742 257999999999999999999999999999654 56889999999999999999994
Q ss_pred ---ccccccccCC-cchHHHHHHHHHHHHHhcCC
Q 042277 108 ---FEMSDLEKGS-MKPVINCLLNLRAEYITGGD 137 (899)
Q Consensus 108 ---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g~ 137 (899)
|+++|||||+ +++|+.||+||.+++.++|.
T Consensus 91 ~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~~~g~ 124 (146)
T 1wyn_A 91 VDLFEANDLFESGNMTQVQVSLLALAGKAKTKGL 124 (146)
T ss_dssp SSCCCHHHHHTCSCSHHHHHHHHHHHHHHGGGTS
T ss_pred ccccChhHHHhcCChHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 99999999999999988875
No 39
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.92 E-value=6.8e-26 Score=215.82 Aligned_cols=107 Identities=25% Similarity=0.395 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCCCC--CCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCC
Q 042277 28 QRALLIEWLNSILPNLN--FPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGI 105 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~--~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gv 105 (899)
.+.++++||+++++... .|..+++++|.++||||+|||+|+|+|+||+|+||+..+...|+++|||++||+||+.||+
T Consensus 7 ~e~e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~~g~ 86 (121)
T 1wyr_A 7 GEEQIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQV 86 (121)
T ss_dssp SHHHHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHcCC
Confidence 35689999999976321 1222334457999999999999999999999999987776678999999999999999999
Q ss_pred CcccccccccCC-cchHHHHHHHHHHHHHh
Q 042277 106 SRFEMSDLEKGS-MKPVINCLLNLRAEYIT 134 (899)
Q Consensus 106 p~F~~~DL~eg~-~~~Vv~cl~aL~~~~~~ 134 (899)
..|+|+|||||+ |++|+.||+||++++..
T Consensus 87 ~~F~~~DL~e~kn~~~V~~cL~aL~~~~~~ 116 (121)
T 1wyr_A 87 EIFDPDDLYSGVNFSKVLSTLLAVNKATES 116 (121)
T ss_dssp CCCCHHHHHTCSCHHHHHHHHHHHHHHHSC
T ss_pred CccCHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999 99999999999999865
No 40
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.91 E-value=5.8e-25 Score=226.72 Aligned_cols=106 Identities=21% Similarity=0.395 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCCC
Q 042277 27 KQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGIS 106 (899)
Q Consensus 27 ~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gvp 106 (899)
.++.|+++||++++|.. +| +.++|.++||||+|||+|+|+|+||+|+||+..+...|+++|||++||+||+.||||
T Consensus 55 ~~~~e~~~WIe~~l~~~-l~---~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~~~Gvp 130 (203)
T 1p5s_A 55 CRVDEAKKWIEECLGTD-LG---PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLP 130 (203)
T ss_dssp HHHHHHHHHHHHHHTSC-CC---CGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCC-CC---ChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcchHHHHHHHHHHHHHHcCCC
Confidence 57899999999999974 33 567999999999999999999999999999756666789999999999999999999
Q ss_pred c---ccccccccCC-cchHHHHHHHHHHHHHhcC
Q 042277 107 R---FEMSDLEKGS-MKPVINCLLNLRAEYITGG 136 (899)
Q Consensus 107 ~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g 136 (899)
. |+|+||||++ +.+|+.||+||.+++...|
T Consensus 131 ~~~lF~t~DL~e~kn~~~Vi~~L~aL~~~a~~~g 164 (203)
T 1p5s_A 131 EIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQD 164 (203)
T ss_dssp GGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCHHHHHhcCCHHHHHHHHHHHHHHHhhcC
Confidence 7 9999999999 9999999999999998876
No 41
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=222.80 Aligned_cols=107 Identities=18% Similarity=0.314 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc--cccccc-------CCCcchhhhhHHHH
Q 042277 26 AKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASV--DEANYS-------YNSSMSRSGKIARF 96 (899)
Q Consensus 26 a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~~~-------~~~~~~~~ENI~~F 96 (899)
..++.++++||++++|.. +| +.++|.++||||+|||+|+|+|+||+| +||+.. +...|+++|||++|
T Consensus 24 ~~~~~e~~~WIe~~lg~~-lp---~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~F 99 (190)
T 2rr8_A 24 LCHLEEAKRWMEACLGED-LP---PTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQW 99 (190)
T ss_dssp HHHHHHHHHHHHHHSCCC-CC---CHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCC-CC---ChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHHHH
Confidence 344589999999999973 33 468999999999999999999999999 687432 23468899999999
Q ss_pred HHHHhhcCCCc---ccccccccCC-cchHHHHHHHHHHHHHhcC
Q 042277 97 LTTLGKLGISR---FEMSDLEKGS-MKPVINCLLNLRAEYITGG 136 (899)
Q Consensus 97 L~a~~~~Gvp~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g 136 (899)
|+||+.||||. |+|+|||||+ +.+|+.||+||++++.++|
T Consensus 100 L~ac~~~Gvp~~~lFet~DL~e~kn~~~Vi~cL~aL~~~a~~~g 143 (190)
T 2rr8_A 100 LNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLG 143 (190)
T ss_dssp HHGGGGTTCCSTTCCCHHHHTCTTCCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCCCccccCCHHHHHhcCCHHHHHHHHHHHHHHHHHCC
Confidence 99999999997 9999999999 9999999999999998886
No 42
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=99.90 E-value=2.1e-24 Score=220.82 Aligned_cols=108 Identities=18% Similarity=0.302 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccc--cccc-------cCCCcchhhhhHHHH
Q 042277 26 AKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVD--EANY-------SYNSSMSRSGKIARF 96 (899)
Q Consensus 26 a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~--ki~~-------~~~~~~~~~ENI~~F 96 (899)
..|..|++.||++++|.. +| ++++|.++|+||+|||+|+|+|+||+|+ ||+. .+...|+++|||++|
T Consensus 46 l~~~~e~~~WIe~~lg~~-l~---~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~F 121 (193)
T 3i6x_A 46 LCHLEEAKRWMEACLGED-LP---PTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQW 121 (193)
T ss_dssp HHHHHHHHHHHHHHHSSC-CC---CGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CC---ChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHHHH
Confidence 345669999999999973 33 4578999999999999999999999995 8853 234568899999999
Q ss_pred HHHHhhcCCCc---ccccccccCC-cchHHHHHHHHHHHHHhcCC
Q 042277 97 LTTLGKLGISR---FEMSDLEKGS-MKPVINCLLNLRAEYITGGD 137 (899)
Q Consensus 97 L~a~~~~Gvp~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~~g~ 137 (899)
|+||++||||. |+++|||+|+ +++|+.||+||..++...|.
T Consensus 122 L~ac~~~Gvp~~~lFet~DL~e~kn~~~V~~cL~aL~~~a~~~G~ 166 (193)
T 3i6x_A 122 LNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFKLGL 166 (193)
T ss_dssp HHHHHHHTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCcccCCCcHHHhcCCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999996 9999999999 99999999999999988764
No 43
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.74 E-value=1.6e-18 Score=205.31 Aligned_cols=103 Identities=32% Similarity=0.365 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCCCCC-----CCCChHHHHHhchhhHHHHHHhhhhcCCcc--ccccccCCC-cchhhhhHHHHHHHH-h
Q 042277 31 LLIEWLNSILPNLNFP-----IKASDEELRACLIDGTVLCQILKRLKPASV--DEANYSYNS-SMSRSGKIARFLTTL-G 101 (899)
Q Consensus 31 e~~~Wi~~~~g~~~~~-----~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~~~~~~-~~~~~ENI~~FL~a~-~ 101 (899)
||++||+++.+ ++.. +.++.++|.++||||++||+|+|+|+||+| ++|+..|.. .|+++|||++||.|| +
T Consensus 9 ~~~~Wl~~~~~-l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~ 87 (587)
T 3ky9_A 9 QCTHWLIQCRV-LPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCE 87 (587)
T ss_dssp HHHHHHHHTTC-SCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHH
Confidence 89999998643 2221 345679999999999999999999999999 588865544 488999999999999 8
Q ss_pred hcCCCc---ccccccccCC-cchHHHHHHHHHHHHHh
Q 042277 102 KLGISR---FEMSDLEKGS-MKPVINCLLNLRAEYIT 134 (899)
Q Consensus 102 ~~Gvp~---F~~~DL~eg~-~~~Vv~cl~aL~~~~~~ 134 (899)
+||||. |+++|||+++ +++|+.||+||...+..
T Consensus 88 ~~g~~~~~~f~~~Dl~~~~~~~~V~~~l~~l~~~~~~ 124 (587)
T 3ky9_A 88 KFGLKRSELFEAFDLFDVQDFGKVIYTLSALSWTPIA 124 (587)
T ss_dssp TTCCCTTSSCCHHHHHTCSCHHHHHHHHHHHHHSTTT
T ss_pred HcCCCHHHcCCchhhhccCCcchHHHHHHHHhhhhhh
Confidence 999996 9999999999 99999999999885443
No 44
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.3e-14 Score=134.77 Aligned_cols=107 Identities=18% Similarity=0.308 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcC
Q 042277 25 EAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLG 104 (899)
Q Consensus 25 ~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~G 104 (899)
....+.....||+..++....+ +...+|.+.|+||++||+|+|.|.|+.|++++..|...++.+|||..||.+++.+|
T Consensus 16 ~~~q~~~f~~WIN~~L~~~~~~--~~v~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p~~~~~~~eNv~~aL~~~~~~g 93 (129)
T 2yrn_A 16 LEDQKRIYTDWANHYLAKSGHK--RLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAKG 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC--SCCSCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhcccCCC--ccchhHHHHcccHHHHHHHHHHHhcCCcccccCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 3556678999999999865432 23468999999999999999999999999998777677888999999999999999
Q ss_pred CCc--ccccccccCCcchHHHHHHHHHHHHH
Q 042277 105 ISR--FEMSDLEKGSMKPVINCLLNLRAEYI 133 (899)
Q Consensus 105 vp~--F~~~DL~eg~~~~Vv~cl~aL~~~~~ 133 (899)
++. ..+.|+++|....|+-+|.+|.+++.
T Consensus 94 v~~~~i~~~DI~dgn~~~iL~Llw~L~r~~q 124 (129)
T 2yrn_A 94 INIQGLSAEEIRNGNLKAILGLFFSLSRYKQ 124 (129)
T ss_dssp CCCTTCCHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CcccCCChhhhhcCCHhHHHHHHHHHHHHHh
Confidence 984 88999999999999999999987765
No 45
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-11 Score=122.22 Aligned_cols=113 Identities=17% Similarity=0.299 Sum_probs=91.1
Q ss_pred cccccccCCchHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccc--cccccCCCcchhh
Q 042277 13 AFESSVNINSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVD--EANYSYNSSMSRS 90 (899)
Q Consensus 13 ~~~~~~~~~~~~~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~--ki~~~~~~~~~~~ 90 (899)
+|.+...... ..|.|+++||++++|... + .. +.|+||+++|+|||+|.||+|+ ||+-.+...+.++
T Consensus 12 v~~t~~~~~~----~sr~ElL~WIN~~L~~~~-~---ki----E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~ 79 (159)
T 1wyo_A 12 VYSTSVTSEN----LSRHDMLAWVNDSLHLNY-T---KI----EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYI 79 (159)
T ss_dssp CCCCSSCCCC----CCHHHHHHHHHHHSCCCC-S---SG----GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHH
T ss_pred eeeccCCCCc----hhHHHHHHHHHHHHCCCC-c---hh----hhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHH
Confidence 4444444433 356799999999999742 2 11 3599999999999999999999 9985555678899
Q ss_pred hhHHHHHHHHhhcCCCc-ccccccccCCcchHHHHHHHHHHHHHhcCC
Q 042277 91 GKIARFLTTLGKLGISR-FEMSDLEKGSMKPVINCLLNLRAEYITGGD 137 (899)
Q Consensus 91 ENI~~FL~a~~~~Gvp~-F~~~DL~eg~~~~Vv~cl~aL~~~~~~~g~ 137 (899)
+||..|..++.++|||. +..-.|-.|++.--++=+.=++.+++....
T Consensus 80 ~N~k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~ 127 (159)
T 1wyo_A 80 HNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD 127 (159)
T ss_dssp HHHHHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCC
Confidence 99999999999999997 777778999987778888888999988643
No 46
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=99.27 E-value=8.2e-12 Score=118.64 Aligned_cols=100 Identities=15% Similarity=0.279 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccc--cccccCCCcchhhhhHHHHHHHHhhcCCC
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVD--EANYSYNSSMSRSGKIARFLTTLGKLGIS 106 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~--ki~~~~~~~~~~~ENI~~FL~a~~~~Gvp 106 (899)
|.|+++||++++|... + .. +.|+||+++|+|||+|.||+|+ ||+-.+...+.+++|+..|..|+.++|||
T Consensus 7 r~ElL~WIN~~L~~~~-~---ki----E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~ 78 (123)
T 2qjz_A 7 RHDMLAWINESLQLNL-T---KI----EQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVD 78 (123)
T ss_dssp HHHHHHHHHHHHTCCC-C---CG----GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCCC-c---hH----HHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCC
Confidence 7899999999999743 2 12 3599999999999999999999 99855656788999999999999999999
Q ss_pred c-ccccccccCCcchHHHHHHHHHHHHHhcC
Q 042277 107 R-FEMSDLEKGSMKPVINCLLNLRAEYITGG 136 (899)
Q Consensus 107 ~-F~~~DL~eg~~~~Vv~cl~aL~~~~~~~g 136 (899)
. +..-.|-.|++.--++=+.=++.++....
T Consensus 79 k~i~v~kLvkgk~qdnleflqW~k~f~d~n~ 109 (123)
T 2qjz_A 79 KIIPVDKLVKGKFQDNFEFVQWFKKFFDANY 109 (123)
T ss_dssp CCCCHHHHTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CccCHHHHHcCCchhHHHHHHHHHHHHHHcC
Confidence 7 77777888987777777888888888764
No 47
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=99.16 E-value=4.7e-11 Score=128.74 Aligned_cols=115 Identities=18% Similarity=0.322 Sum_probs=88.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHhcCCCC-----CCCCCChHHHHHhchhhHHHHHHhhhhcCCccc--cccccCCCcchhh
Q 042277 18 VNINSEVEAKQRALLIEWLNSILPNLN-----FPIKASDEELRACLIDGTVLCQILKRLKPASVD--EANYSYNSSMSRS 90 (899)
Q Consensus 18 ~~~~~~~~a~r~~e~~~Wi~~~~g~~~-----~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~--ki~~~~~~~~~~~ 90 (899)
.+....-....+.....||+..++... +|..+...+|...|+||++||+|+|+|.||+|+ +++.++...++.+
T Consensus 15 ~~~~~~~~~~q~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~ 94 (275)
T 1aoa_A 15 EGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQ 94 (275)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHH
T ss_pred CCCccccCHHHHHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHH
Confidence 344444455677899999999999742 344556689999999999999999999999997 7876554456789
Q ss_pred hhHHHHHHHHhhcCCCc--ccccccccCCcchHHHHHHHHHHHH
Q 042277 91 GKIARFLTTLGKLGISR--FEMSDLEKGSMKPVINCLLNLRAEY 132 (899)
Q Consensus 91 ENI~~FL~a~~~~Gvp~--F~~~DL~eg~~~~Vv~cl~aL~~~~ 132 (899)
|||..||.+++.+|++. +++.||++|+...++--|..|-.++
T Consensus 95 eNv~~aL~~~k~~g~~l~~I~~~DIvdg~~~liLgLlw~li~~~ 138 (275)
T 1aoa_A 95 ENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIG 138 (275)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccCCCHHHHHcCcHHHHHHHHHHHHHHh
Confidence 99999999999999985 9999999999555555555555543
No 48
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.11 E-value=7.7e-11 Score=137.32 Aligned_cols=106 Identities=18% Similarity=0.307 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCC-----CCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc--ccccccCC-CcchhhhhHHHHHH
Q 042277 27 KQRALLIEWLNSILPNL-----NFPIKASDEELRACLIDGTVLCQILKRLKPASV--DEANYSYN-SSMSRSGKIARFLT 98 (899)
Q Consensus 27 ~r~~e~~~Wi~~~~g~~-----~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~~~~~-~~~~~~ENI~~FL~ 98 (899)
.++.....||+..++.. .+|..+...+|.+.|+||++||+|+|+|.||+| ++|+.++. ..++++|||..||.
T Consensus 7 ~q~~~f~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~~~~~~~~~eNi~~~L~ 86 (506)
T 1pxy_A 7 SEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLN 86 (506)
T ss_dssp CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccccccHHHHHHHHHHHHH
Confidence 44668999999999975 256667788999999999999999999999999 88986653 24788999999999
Q ss_pred HHhhcCCCc--ccccccccCCcchHHHHHHHHHHHH
Q 042277 99 TLGKLGISR--FEMSDLEKGSMKPVINCLLNLRAEY 132 (899)
Q Consensus 99 a~~~~Gvp~--F~~~DL~eg~~~~Vv~cl~aL~~~~ 132 (899)
+|+.+|++. .++.||++|+...++--|..|-.++
T Consensus 87 ~~k~~g~~~~~i~~~Dl~dg~~~liLgLiw~li~~~ 122 (506)
T 1pxy_A 87 SAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQ 122 (506)
T ss_dssp HHHHTTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCCCHHHHhcCChHHHHHHHHHHHHHH
Confidence 999999985 8999999999444444344443333
No 49
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.00 E-value=4e-10 Score=131.52 Aligned_cols=108 Identities=15% Similarity=0.208 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhcCCCC-----CCCCCChHHHHHhchhhHHHHHHhhhhcCCcc--cccccc----CCCcchhhhhHH
Q 042277 26 AKQRALLIEWLNSILPNLN-----FPIKASDEELRACLIDGTVLCQILKRLKPASV--DEANYS----YNSSMSRSGKIA 94 (899)
Q Consensus 26 a~r~~e~~~Wi~~~~g~~~-----~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~~~----~~~~~~~~ENI~ 94 (899)
...+.....||+++++... +|..+...+|.+.|+||++||+|+|+|.||+| ++|+.+ +...++.+|||+
T Consensus 11 ~~q~~~f~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~~~~~~~~eNi~ 90 (513)
T 1rt8_A 11 EEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNN 90 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCcccHHHHHHHHH
Confidence 4566799999999999753 45556678999999999999999999999999 577753 234457889999
Q ss_pred HHHHHHhhcCCC---cccccccccCCcchHHHHHHHHHHHHH
Q 042277 95 RFLTTLGKLGIS---RFEMSDLEKGSMKPVINCLLNLRAEYI 133 (899)
Q Consensus 95 ~FL~a~~~~Gvp---~F~~~DL~eg~~~~Vv~cl~aL~~~~~ 133 (899)
.||.+++.+|++ .|++.||++|+...++--|..|-.++.
T Consensus 91 ~~L~~~k~~g~~~l~~i~~~DI~dg~~~liLgLiW~li~~~~ 132 (513)
T 1rt8_A 91 VVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGL 132 (513)
T ss_dssp HHHHHHHHHSSCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCccCCcCHHhhhcCCHHHHHHHHHHHHHHhh
Confidence 999999999994 399999999996666666666666555
No 50
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=98.93 E-value=6.6e-10 Score=118.50 Aligned_cols=106 Identities=14% Similarity=0.251 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhc
Q 042277 24 VEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKL 103 (899)
Q Consensus 24 ~~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~ 103 (899)
-...++.....||+.+++..+. ...+|...|+||++||+|+|.|.||.|++++. +...++.+|||+.||.+++.+
T Consensus 24 ~~~~q~~~f~~WiN~~L~~~~~----~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~-~~~~~~~~eNi~~aL~~~k~~ 98 (254)
T 1wku_A 24 WEKQQRKTFTAWCNSHLRKAGT----QIENIEEDFRNGLKLMLLLEVISGERLPRPDK-GKMRFHKIANVNKALDFIASK 98 (254)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTC----CCSCTTTTTTTSHHHHHHHHHHHCSCCCCCCS-CCSHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHccccCC----CccCHHHHccCHHHHHHHHHHhCcCCCCCCCC-CccHHHHHHhHHHHHHHHHHc
Confidence 3456678899999999986543 34578999999999999999999999999863 445578899999999999999
Q ss_pred CCCc--ccccccccCCcchHHHHHHHHHHHHHh
Q 042277 104 GISR--FEMSDLEKGSMKPVINCLLNLRAEYIT 134 (899)
Q Consensus 104 Gvp~--F~~~DL~eg~~~~Vv~cl~aL~~~~~~ 134 (899)
|++. .++.|+++|....++--|..|-.++..
T Consensus 99 gv~lv~I~~~DIvdG~~kliLgLlW~li~~~~i 131 (254)
T 1wku_A 99 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 131 (254)
T ss_dssp TCCCCSCCHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred CCCccCCCHHHHhccchHHHHHHHHHHHHHHhh
Confidence 9985 899999999966666666666665554
No 51
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=98.85 E-value=1.8e-09 Score=114.59 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc-ccccccCCCcchhhhhHHHHHHHHhhcC
Q 042277 26 AKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASV-DEANYSYNSSMSRSGKIARFLTTLGKLG 104 (899)
Q Consensus 26 a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv-~ki~~~~~~~~~~~ENI~~FL~a~~~~G 104 (899)
..++.....||+..++.... ...+|...|+||++||+|+|+|.||.+ ++++.+|...++.+|||..||.+++.+|
T Consensus 19 ~~q~~~f~~WiN~~L~~~~~----~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~~g 94 (245)
T 2wa7_A 19 KIQQNTFTRWCNEHLKCVNK----RIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRES 94 (245)
T ss_dssp GHHHHHHHHHHHHHHGGGTC----CCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccccCC----CccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 45677899999999885432 234788889999999999999999999 8898776666678999999999999999
Q ss_pred CCc--ccccccccCCcchHHHHHHHHHHHHHh
Q 042277 105 ISR--FEMSDLEKGSMKPVINCLLNLRAEYIT 134 (899)
Q Consensus 105 vp~--F~~~DL~eg~~~~Vv~cl~aL~~~~~~ 134 (899)
++. ..+.|+++|+...++-=|..|-.++..
T Consensus 95 ~~lv~I~~~DIvdG~~kliLgLlW~li~~~~i 126 (245)
T 2wa7_A 95 IKLVSIDSKAIVDGNLKLILGLVWTLILHYSI 126 (245)
T ss_dssp CCCCSCCHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CcccCCCHHHhhCCCHHHHHHHHHHHHHHHcc
Confidence 984 899999999966666666666666544
No 52
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=98.71 E-value=6.9e-09 Score=110.06 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=84.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHH
Q 042277 20 INSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTT 99 (899)
Q Consensus 20 ~~~~~~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a 99 (899)
...+....++.....||+..++....| ...+|...|+||++||+|+|+|.|+.+++.. +...++.+|||..||.+
T Consensus 9 ~~~e~~~~q~~~f~~WiN~~L~~~~~~---~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~~--~~~~~~~~eNv~~aL~~ 83 (246)
T 1dxx_A 9 DSYEREDVQKKTFTKWVNAQFSKFGKQ---HIENLFSDLQDGRRLLDLLEGLTGQKLPKEK--GSTRVHALNNVNKALRV 83 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTCC---CCSCTTTTTTTSHHHHHHHHHHHSCCCCCCC--CSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhccccCCC---CccCHHHHhCcHHHHHHHHHHHcCCcCCCCC--CccHHHHHHHHHHHHHH
Confidence 344556777889999999999864322 3457888899999999999999999998854 33456788999999999
Q ss_pred HhhcCCCc--ccccccccCCcchHHHHHHHHHHH
Q 042277 100 LGKLGISR--FEMSDLEKGSMKPVINCLLNLRAE 131 (899)
Q Consensus 100 ~~~~Gvp~--F~~~DL~eg~~~~Vv~cl~aL~~~ 131 (899)
++.+|++. +.+.|+++|+...++-=|..|-.+
T Consensus 84 ~k~~g~~l~~I~~~DIvdg~~~liL~Llw~li~~ 117 (246)
T 1dxx_A 84 LQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILH 117 (246)
T ss_dssp HHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCccccCCHHHhhcccHHHHHHHHHHHHHH
Confidence 99999975 999999999955555555555444
No 53
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=98.70 E-value=1.5e-08 Score=107.24 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCC-CCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHh
Q 042277 23 EVEAKQRALLIEWLNSILPNLNF-PIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLG 101 (899)
Q Consensus 23 ~~~a~r~~e~~~Wi~~~~g~~~~-~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~ 101 (899)
+....++.....||+..++.... |..+...+|...|+||++||+|+|.|.|+.+++.. +...++.+|||..||.+++
T Consensus 8 e~~~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~~--~~~~~~~~eNv~~aL~~~k 85 (245)
T 1sh5_A 8 ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREK--GRMRFHKLQNVQIALDYLR 85 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCCC--CCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccCCC--CcchHHHHHhHHHHHHHHH
Confidence 44667778899999999986321 12234567889999999999999999999999753 3345778999999999999
Q ss_pred hcCCCc--ccccccccCCcchHHHHHHHHHHHHHh
Q 042277 102 KLGISR--FEMSDLEKGSMKPVINCLLNLRAEYIT 134 (899)
Q Consensus 102 ~~Gvp~--F~~~DL~eg~~~~Vv~cl~aL~~~~~~ 134 (899)
.+|++. ..+.|+++|+...++-=|.+|-.++..
T Consensus 86 ~~g~~l~~I~~~DIvdg~~k~iLgLlw~li~~~~i 120 (245)
T 1sh5_A 86 HRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQI 120 (245)
T ss_dssp HTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HcCCcccCCChHhhhcccHHHHHHHHHHHHHhhcc
Confidence 999874 899999999966666666677666554
No 54
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=98.64 E-value=7.6e-07 Score=95.78 Aligned_cols=292 Identities=18% Similarity=0.238 Sum_probs=172.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhcCCCEEEEEecCCCCCCCC
Q 042277 437 GALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKGNIRVYCRIRPFLPGQT 516 (899)
Q Consensus 437 ~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqelkGnIrV~~RVRP~~~~E~ 516 (899)
+.++.++.+.+.++..+...++.|.+.++.++.+ ...||+|.|.|.|+||.||+|+=+-+-..
T Consensus 10 ~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE--------------~lrRRkLENSIdElKG~IRcFAYi~~~~~--- 72 (333)
T 4etp_B 10 KEIAALEKEIAALEKEISKQEKFYNDTYNTVCKE--------------LLRSRRLENSIIEQKGTMRVYAYVMEQNL--- 72 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTCCEEEEEECCSSC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhHHHhcCcEEEEEEECcccC---
Confidence 4567788888888999999999999998887766 45699999999999999999998876322
Q ss_pred CCCceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCCC--ChhhHHhchHHHHHHHH-cCCCeeEeeccccCCcccc
Q 042277 517 KKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPDA--TQAEVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTY 593 (899)
Q Consensus 517 ~~~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~a--tQeeVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTy 593 (899)
+..+.+...+.++. +. ...+.|.||+|++... .++-+|++.++.++.++ .+.|+.||..|+.-
T Consensus 73 --p~~~~idY~~~~It--~~-----~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~----- 138 (333)
T 4etp_B 73 --PENLLFDYENGVIT--QG-----LSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP----- 138 (333)
T ss_dssp --CSSCEEETTTTEEE--C-------CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC-----
T ss_pred --CccEEEecccceEe--ec-----CCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC-----
Confidence 22344555555554 11 1357899999998776 56667788999999999 99999999987541
Q ss_pred eeecCCCCCCCccchhHHHHHHHHHhhhccC--CCeeEEEEEEEEEEeccc-ccccccCcchhhhhhhhcccccccceec
Q 042277 594 TMSGPSGPHEEDWGVNYRALNDLFNLSQNRR--SSIMYEVAVQMVEIYNEQ-VRDLLTNDVFWILAICFLDLHTLGIMST 670 (899)
Q Consensus 594 TM~G~~~~~~~~~GIipRal~~LF~~~~~~~--~~~~~~V~vS~lEIYnE~-V~DLL~~~~~~~~~~~~~~~~~~~i~~~ 670 (899)
|+ ..-..|+..+..+. -.+.|.+.++|+.+-++. ..|||.+..... ..+|...
T Consensus 139 ------------w~---~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~---------~~~I~lk 194 (333)
T 4etp_B 139 ------------HG---SLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHND---------KDSIKLK 194 (333)
T ss_dssp ------------CC---HHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-------------------CE
T ss_pred ------------cH---HHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccC---------CCCceEE
Confidence 11 12223333222220 136799999998888776 799998753210 1111111
Q ss_pred cCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEEEeecCCC---CCceeeEEEEEecCC
Q 042277 671 SQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHVRGKDLKT---GIPLHGNLHLVDLAG 747 (899)
Q Consensus 671 ~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v~~~~~~~---~~~~~skL~lVDLAG 747 (899)
-..+.+.+ +-+.+.+.+..+.+.++.. ..+. ...-...-.|+.+.+...+... ..+..-..+||.+-+
T Consensus 195 iee~sI~l-dS~~i~i~~~~~~l~~~~k-------l~~~-~~~~~~GI~IlKfqf~~~~~~~~~n~~~~~~~fYFiEi~~ 265 (333)
T 4etp_B 195 FEKHSISL-DSKLVIIENGLEDLPLNFS-------ADEH-PNLPHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNN 265 (333)
T ss_dssp EETTEEEC-CSCCEEESSGGGGSCTTSS-------CCC---------CEEEEEEEEECC--------CCCEEEEEEEECS
T ss_pred eecceEee-cceEEEeccccccchhhhc-------cccC-CCCCCCCceEEEEEEEecCcccccccCCcceeEEEEEecC
Confidence 11111111 2233444443322111100 0000 0001124557777776654321 122345789998775
Q ss_pred CCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCCCcceEEEEEeCCCCC
Q 042277 748 SERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVN 820 (899)
Q Consensus 748 SEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGGnskT~mI~~ISP~~~ 820 (899)
.. .+..|.++|.-= -.-.|+++-+|+.-|- ..|.++++++.-...
T Consensus 266 ~~--------------------ti~~l~~~i~~~-------~~~~spi~~ilkkLl~-~TKS~flfnl~~~~~ 310 (333)
T 4etp_B 266 LK--------------------SIEQFDKSIFKK-------ESAETPIALVLKKLIS-DTKSFFLLNLNDSKN 310 (333)
T ss_dssp HH--------------------HHHHHHSCC-----------CCCCHHHHHHHHHHH-HSBCEEEEEECCSTT
T ss_pred hh--------------------HHHHHHhhcCcc-------cccCCCHHHHHHHHHh-hCcceEEEEcCCcch
Confidence 33 234444443221 1345788888876663 578899999976544
No 55
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=98.55 E-value=6.2e-08 Score=105.30 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=89.7
Q ss_pred cCCchHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHH
Q 042277 19 NINSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLT 98 (899)
Q Consensus 19 ~~~~~~~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~ 98 (899)
.+..|-...++.....||+..++.... ...+|...|+||++||+|+|.|.|+.+++.. +...++.+|||..+|.
T Consensus 65 ~~~~e~~~vQkktft~WINs~L~~~~~----~V~dL~~DL~DGvvL~~Lle~L~~~~l~~~~--~~~r~~kleNvn~aL~ 138 (296)
T 3f7p_A 65 RIADERDRVQKKTFTKWVNKHLIKAQR----HISDLYEDLRDGHNLISLLEVLSGDSLPREK--GRMRFHKLQNVQIALD 138 (296)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHGGGTC----CCSCTTTTTTTSHHHHHHHHHHHCCCCCCCC--CSSHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHcccCCC----CcccHHHHHhhHHHHHHHHHHhcCCcccccC--CcChhhhhhhHHHHHH
Confidence 345666788899999999999975432 2457888899999999999999999999843 3345678899999999
Q ss_pred HHhhcCCCc--ccccccccCCcchHHHHHHHHHHHHHh
Q 042277 99 TLGKLGISR--FEMSDLEKGSMKPVINCLLNLRAEYIT 134 (899)
Q Consensus 99 a~~~~Gvp~--F~~~DL~eg~~~~Vv~cl~aL~~~~~~ 134 (899)
+++.+|++. ..+.|+.+|+...++--|..|-.++..
T Consensus 139 ~lk~~gv~lv~I~~~DIvdGn~kliLgLlW~Li~~~~i 176 (296)
T 3f7p_A 139 YLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQI 176 (296)
T ss_dssp HHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccccCCChhhhhccchHHHHHHHHHhhcccce
Confidence 999999874 899999999977777777777766543
No 56
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=98.53 E-value=2.9e-06 Score=104.40 Aligned_cols=103 Identities=15% Similarity=0.260 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCC
Q 042277 26 AKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGI 105 (899)
Q Consensus 26 a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gv 105 (899)
..++.....||+..++....+ -.+|...|+||++||+|+|.|.|+.|++++. +...++.+|||..+|.+++..|+
T Consensus 7 ~~q~~~f~~Win~~L~~~~~~----v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~-~~~~~~~~eN~~~~l~~~~~~g~ 81 (863)
T 1sjj_A 7 KQQRKTFTAWCNSHLRKAGTQ----IENIEEDFRDGLKLMLLLEVISGERLAKPER-GKMRVHKISNVNKALDFIASKGV 81 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHCSC----CCCCSSTTSSCHHHHHHHHHTSCCCCCCSCC-CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCCCC----ccCHHHHhcCHHHHHHHHHHhCCCceeCCCC-CccHHHHHHHHHHHHHHHHHcCC
Confidence 456678899999998764433 3567888999999999999999999999764 34556788999999999999999
Q ss_pred Cc--ccccccccCCcchHHHHHHHHHHHHH
Q 042277 106 SR--FEMSDLEKGSMKPVINCLLNLRAEYI 133 (899)
Q Consensus 106 p~--F~~~DL~eg~~~~Vv~cl~aL~~~~~ 133 (899)
+. ..+.|+.+|+...++--|..|-.++.
T Consensus 82 ~~~~i~~~di~~g~~~~~l~l~w~l~~~~~ 111 (863)
T 1sjj_A 82 KLVSIGAEEIVDGNVKMTLGMIWTIILRFA 111 (863)
T ss_dssp CCTTCCSHHHHTTCHHHHHHHHHHHHSCCC
T ss_pred ccCCCChHHhhcCCHHHHHHHHHHHHHHHh
Confidence 75 89999999996666666666655444
No 57
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.49 E-value=1.7e-07 Score=109.26 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc--ccccccCC-----CcchhhhhHHHHHHH
Q 042277 27 KQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASV--DEANYSYN-----SSMSRSGKIARFLTT 99 (899)
Q Consensus 27 ~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~~~~~-----~~~~~~ENI~~FL~a 99 (899)
.+......||+.. +. .+...+|.+.|+||++||+|+++|.||.| ++++..|. ..++.+|||..||.+
T Consensus 285 ~q~k~f~~WiN~~-~~-----~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~ 358 (513)
T 1rt8_A 285 REARVFTLWLNSL-DV-----TPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDL 358 (513)
T ss_dssp HHHHHHHHHHHHT-TC-----SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CC-----CCCccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHHHHHH
Confidence 4567789999997 43 13356899999999999999999999998 78886552 336778999999999
Q ss_pred HhhcCCCc--ccccccccCCcchHHHHHHHHHHHH
Q 042277 100 LGKLGISR--FEMSDLEKGSMKPVINCLLNLRAEY 132 (899)
Q Consensus 100 ~~~~Gvp~--F~~~DL~eg~~~~Vv~cl~aL~~~~ 132 (899)
++.+|++. +.+.|+++|+...++--|.+|-.++
T Consensus 359 ~~~~gv~lv~i~~~DIvdg~~~~~LgLlW~li~~~ 393 (513)
T 1rt8_A 359 GKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMN 393 (513)
T ss_dssp HHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCceeeccchhhhhcCCchhhHHHHHHHHHHH
Confidence 99999984 9999999999555555555554443
No 58
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=98.29 E-value=5.2e-07 Score=97.03 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc-ccccccCCCcchhhhhHHHHHHHHhhcCCC
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASV-DEANYSYNSSMSRSGKIARFLTTLGKLGIS 106 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv-~ki~~~~~~~~~~~ENI~~FL~a~~~~Gvp 106 (899)
++.-...||...+.... +.-.+|...|+||++||+|++.|.|+.+ ++++..|...++.+||+..+|.+++..|++
T Consensus 48 Qkktft~WiN~~L~~~~----~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk~~gv~ 123 (272)
T 3hoc_A 48 QQNTFTRWCNEHLKCVS----KRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIK 123 (272)
T ss_dssp HHHHHHHHHHHHHGGGT----CCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccCC----CCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHHHHcCCc
Confidence 44557889999987533 2346788999999999999999999999 888866655567789999999999999987
Q ss_pred c--ccccccccCCcchHHHHHHHHHHHHHh
Q 042277 107 R--FEMSDLEKGSMKPVINCLLNLRAEYIT 134 (899)
Q Consensus 107 ~--F~~~DL~eg~~~~Vv~cl~aL~~~~~~ 134 (899)
. ..+.|+.+|+...++--|..|-.++..
T Consensus 124 lvnI~~~DIvdGn~kliLgLlW~Li~~~~i 153 (272)
T 3hoc_A 124 LVSIDSKAIVDGNLKLILGLIWTLILHYSI 153 (272)
T ss_dssp CSSCCHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred ccccccchhhcCCHHHHHHHHHHHHHHHhh
Confidence 4 889999999977777777777777654
No 59
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=98.19 E-value=1.2e-06 Score=84.41 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccc--cccccCCCcchhhhhHHHHHHHH
Q 042277 23 EVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVD--EANYSYNSSMSRSGKIARFLTTL 100 (899)
Q Consensus 23 ~~~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~--ki~~~~~~~~~~~ENI~~FL~a~ 100 (899)
|....++.--..||...+...+.+ -.+|..-|+||++||+|++.|.|+.++ +++..|...++..||+..-|.++
T Consensus 18 e~~~~q~ktft~WiN~~L~~~~~~----v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~l 93 (131)
T 2vzc_A 18 DKLNVVKKTLITFVNKHLNKLNLE----VTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELM 93 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCC----CCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc----ccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHH
Confidence 333445667889999988765543 356888899999999999999999885 77766766667889999999999
Q ss_pred hhcCCCc--ccccccccCCcchHHHHHHHHHHHH
Q 042277 101 GKLGISR--FEMSDLEKGSMKPVINCLLNLRAEY 132 (899)
Q Consensus 101 ~~~Gvp~--F~~~DL~eg~~~~Vv~cl~aL~~~~ 132 (899)
++.|+.. ..+.|+.+|....++-=|..|-.++
T Consensus 94 k~~gi~l~~I~~~DIvdGn~kliLgLiW~li~~~ 127 (131)
T 2vzc_A 94 QDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKY 127 (131)
T ss_dssp HHTTCCCCSSCHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCCcCCCCHHHhhCCCHHhHHHHHHHHHHHH
Confidence 9999874 8999999999655555555554444
No 60
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=97.76 E-value=3.2e-05 Score=90.03 Aligned_cols=100 Identities=17% Similarity=0.248 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc--ccccccC-CCcchhhhhHHHHHHHH
Q 042277 24 VEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASV--DEANYSY-NSSMSRSGKIARFLTTL 100 (899)
Q Consensus 24 ~~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~~~~-~~~~~~~ENI~~FL~a~ 100 (899)
....++.....||+..+. .+.-.+|...|+||++||+|+++|.||.| ++++.+| ...++.+|||..+|.++
T Consensus 273 ~~~~q~ktf~~WiN~~~~------~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~ 346 (506)
T 1pxy_A 273 ETCRDERCYRLWINSLGI------DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIG 346 (506)
T ss_dssp HHHHHHHHHHHHHTTTTC------SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC------CCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCccccHHHHHHHHHHHHHHH
Confidence 445667788999998742 13456899999999999999999999988 4566443 23457789999999999
Q ss_pred hhcCCCc--ccccccccCCcchHHHHHHHHH
Q 042277 101 GKLGISR--FEMSDLEKGSMKPVINCLLNLR 129 (899)
Q Consensus 101 ~~~Gvp~--F~~~DL~eg~~~~Vv~cl~aL~ 129 (899)
+..|+.. ..+.|+.+|....++-=|.+|-
T Consensus 347 k~~~v~l~~I~~~dIvdg~~kl~L~Liw~li 377 (506)
T 1pxy_A 347 KQLKFSLVNVAGNDIVQGNKKLILGLLWQLM 377 (506)
T ss_dssp HHTTCCCCSCCHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCcccCCCHHHHhcCCHHHHHHHHHHHH
Confidence 9999874 8999999998544444444554
No 61
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=97.33 E-value=0.00021 Score=79.33 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcccc-ccccCCCcchhhhhHHHHHHHHhhcCCC
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDE-ANYSYNSSMSRSGKIARFLTTLGKLGIS 106 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~k-i~~~~~~~~~~~ENI~~FL~a~~~~Gvp 106 (899)
++.--..||...+..... .-.|+..-|+||++||+|++.|.++.+.+ ++..|...++.+||+..-|.++++.|+.
T Consensus 18 Q~ktFt~WiN~~L~~~~~----~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~~g~~ 93 (347)
T 4b7l_A 18 QQNTFTRWCNEHLKSVNK----RIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIK 93 (347)
T ss_dssp HHHHHHHHHHHHHGGGTC----CCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhCcCCC----CcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHHhccc
Confidence 334467899998765333 24568888999999999999999998854 5555555566789999999999999987
Q ss_pred c--ccccccccCCcchHHHHHHHHHHHHHh
Q 042277 107 R--FEMSDLEKGSMKPVINCLLNLRAEYIT 134 (899)
Q Consensus 107 ~--F~~~DL~eg~~~~Vv~cl~aL~~~~~~ 134 (899)
. ..+.|+.+|+...++--|.+|-.++.-
T Consensus 94 lv~i~~~DIvdGn~~liLgLiW~li~~~~i 123 (347)
T 4b7l_A 94 LVSIDSKAIVDGNLKLILGLVWTLILHYSI 123 (347)
T ss_dssp CSSCCHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCcchhhcCCHhhHHHHHHHHHHHHhh
Confidence 4 999999999977788878888777764
No 62
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=97.23 E-value=0.0007 Score=71.99 Aligned_cols=102 Identities=17% Similarity=0.316 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccc--cccccCCCcchhhhhHHHHHHHHhhcCC
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVD--EANYSYNSSMSRSGKIARFLTTLGKLGI 105 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~--ki~~~~~~~~~~~ENI~~FL~a~~~~Gv 105 (899)
-|.|++.||...+.... ..-|+ |.+|.+.|.||+.|.||+|+ ||+-.+.....+..|..-+-.+..++||
T Consensus 16 sR~elL~WiN~~L~~~~----~kiEe----l~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I 87 (268)
T 2r8u_A 16 SRHDMLAWINESLQLNL----TKIEQ----LCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGV 87 (268)
T ss_dssp CHHHHHHHHHHHHTCCC----CCGGG----GGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhcCCc----chHHH----cccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 46899999999998532 12233 89999999999999999986 6653333333455666666677799999
Q ss_pred Cc-ccccccccCCcchHHHHHHHHHHHHHhcCC
Q 042277 106 SR-FEMSDLEKGSMKPVINCLLNLRAEYITGGD 137 (899)
Q Consensus 106 p~-F~~~DL~eg~~~~Vv~cl~aL~~~~~~~g~ 137 (899)
+. +..-.|-.|++.--+.-|.=+|.++...+.
T Consensus 88 ~k~ipV~kLvkgk~qDNlEFlqWfkkf~d~n~~ 120 (268)
T 2r8u_A 88 DKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 120 (268)
T ss_dssp CCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCccCHHHHhccCchhHHHHHHHHHHHHHHcCC
Confidence 97 666668888877677778888999887653
No 63
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=97.23 E-value=0.00019 Score=68.31 Aligned_cols=98 Identities=13% Similarity=0.278 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHH-HhchhhHHHHHHhhhhcCCccccccc-cCC-CcchhhhhHHHHHHHHhhcCC
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELR-ACLIDGTVLCQILKRLKPASVDEANY-SYN-SSMSRSGKIARFLTTLGKLGI 105 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~-~~LkdG~iLC~l~N~l~PGsv~ki~~-~~~-~~~~~~ENI~~FL~a~~~~Gv 105 (899)
+.+++.|....+..... ...-.+|. ..|+||+.+|.|++.|.|++|..--. .+. ......+|....+..|+++|+
T Consensus 9 d~~ll~W~N~kl~~~g~--~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~ArklG~ 86 (124)
T 1wjo_A 9 DDIIVNWVNRTLSEAGK--STSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGA 86 (124)
T ss_dssp CHHHHHHHHHHHHHHTC--SCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCC--CcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 45789999988763111 11245788 89999999999999999999844311 111 224567999999999999999
Q ss_pred Cc-ccccccccCC---cchHHHHHHHH
Q 042277 106 SR-FEMSDLEKGS---MKPVINCLLNL 128 (899)
Q Consensus 106 p~-F~~~DL~eg~---~~~Vv~cl~aL 128 (899)
+. -.+-|+.+++ +--++.||+.-
T Consensus 87 ~~~l~pEDIve~~pK~ilt~va~l~~~ 113 (124)
T 1wjo_A 87 RVYALPEDLVEVKPKMVMTVFACLMGR 113 (124)
T ss_dssp SCCCCHHHHHHTCTTTTTHHHHHHHHH
T ss_pred CcccCHHHHhcCcchhhHHHHHHHHHH
Confidence 98 5677888886 44555666543
No 64
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=96.86 E-value=0.0024 Score=61.09 Aligned_cols=104 Identities=13% Similarity=0.287 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhh-cCCCc
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGK-LGISR 107 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~-~Gvp~ 107 (899)
+..+..|....+.... ...-.+|-...+||..+|.|++.+.|+.|.--.- ......+|+..-+..+++ +|+|.
T Consensus 9 k~~LL~W~q~~~~~y~---~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l---~~~~~~~n~~~af~~Ae~~lgip~ 82 (128)
T 2d87_A 9 KQMLLDWCRAKTRGYE---HVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQL---SPQNRRQNFEVAFSSAETHADCPQ 82 (128)
T ss_dssp HHHHHHHHHHHSSSCT---TCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTS---CSSCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhccCC---CCCCCCccccccccHHHHHHHHHHCcCcCCHHHc---CccCHHHHHHHHHHHHHHcCCCCc
Confidence 5678999999997431 1234678889999999999999999998843221 112356899998998886 89998
Q ss_pred -ccccccccCC---cchHHHHHHHHHHHHHhcCCC
Q 042277 108 -FEMSDLEKGS---MKPVINCLLNLRAEYITGGDI 138 (899)
Q Consensus 108 -F~~~DL~eg~---~~~Vv~cl~aL~~~~~~~g~~ 138 (899)
.++.|+-++. -..|+.-|..|-.++...|..
T Consensus 83 lL~peD~v~~~~pD~ksvmtYvs~l~~~~~~~~~~ 117 (128)
T 2d87_A 83 LLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLV 117 (128)
T ss_dssp CSCHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccCHHHHhccCCccHHHHHHHHHHHHHHHhhcccc
Confidence 7778876554 345666666677777666543
No 65
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.0036 Score=59.06 Aligned_cols=97 Identities=21% Similarity=0.340 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhhcCCCc-
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGKLGISR- 107 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~~Gvp~- 107 (899)
+..+..|....+.... ...-.+|....+||..+|.|++++.|+.|.--.-.+ ....+|...-+..++++|+|.
T Consensus 11 ~~~LL~W~~~~~~~y~---~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~---~~~~~n~~~af~~a~~LGi~~l 84 (119)
T 2d89_A 11 SQSLLVWCKEVTKNYR---GVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNP---QDIKENNKKAYDGFASIGISRL 84 (119)
T ss_dssp HHHHHHHHHHHTTTCS---SCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCT---TCSHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhccCC---CCCCCCccccccccHHHHHHHHHHCcCcCChhhhcc---cCHHHHHHHHHHHHHHhCCCcc
Confidence 4578999999996421 122467888899999999999999999884322111 234689888888889999998
Q ss_pred ccccccccCC---cchHHHHHHHHHHH
Q 042277 108 FEMSDLEKGS---MKPVINCLLNLRAE 131 (899)
Q Consensus 108 F~~~DL~eg~---~~~Vv~cl~aL~~~ 131 (899)
..+-|+-++. -..|+.-+..|-.+
T Consensus 85 l~peDi~~~~~pD~ksvmtYvs~l~~~ 111 (119)
T 2d89_A 85 LEPSDMVLLAIPDKLTVMTYLYQIRAH 111 (119)
T ss_dssp SCHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred cCHHHHhccCCCcHHHHHHHHHHHHHH
Confidence 7777886553 23444444444333
No 66
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=96.52 E-value=0.0014 Score=70.26 Aligned_cols=86 Identities=22% Similarity=0.327 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcccc------ccccCCCcchhhhhHHHHHHHHhh
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDE------ANYSYNSSMSRSGKIARFLTTLGK 102 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~k------i~~~~~~~~~~~ENI~~FL~a~~~ 102 (899)
+..+..|....+...+.+. -.+|...++||.++|.|++.+.|+.++. +...+.......+|....+..+++
T Consensus 170 ~~~LL~W~n~~l~~~g~~~---I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~ 246 (275)
T 1aoa_A 170 EELLLRWANFHLENSGWQK---INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADK 246 (275)
T ss_dssp HHHHHHHHHHHHHHTTCCC---CSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCc---chhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHH
Confidence 5568999998774322221 4578888999999999999999997752 332222223457999999999999
Q ss_pred cCCCc-ccccccccCC
Q 042277 103 LGISR-FEMSDLEKGS 117 (899)
Q Consensus 103 ~Gvp~-F~~~DL~eg~ 117 (899)
+|+|. -.+-|+.++.
T Consensus 247 lGi~~~l~peDi~~~~ 262 (275)
T 1aoa_A 247 LGCRQFVTPADVVSGN 262 (275)
T ss_dssp TTCCCSCCHHHHHTTC
T ss_pred cCCCCcCCHHHcCCCC
Confidence 99997 6777887766
No 67
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=96.49 E-value=0.0068 Score=58.74 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccc--cccccCCCcchhhhhHHHHHHHHhhcCCC
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVD--EANYSYNSSMSRSGKIARFLTTLGKLGIS 106 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~--ki~~~~~~~~~~~ENI~~FL~a~~~~Gvp 106 (899)
|.|++.||..++... + ..-| -|.+|.+.|.||+.|. |+|+ ||.-.+.....+..|..-+-.+..++||+
T Consensus 8 R~eLL~WiN~~L~~n-~---tkIE----~l~sGAaYCQlmD~lf-g~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~ 78 (145)
T 4abo_I 8 RQELLAWINQVTSLG-L---TRIE----DCGKGYAMIQIFDSIY-QDIPLKKVNFECNNEYQYINNWKVLQQVFLKKGID 78 (145)
T ss_dssp HHHHHHHHHHHHTCC-C---CSGG----GGGGSHHHHHHHHHHH-CCSCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCC-c---chHH----HccccHHHHHHHHHHh-cCcchhhcccCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 789999999999852 2 1223 3899999999999999 8774 56533333445667777778888999999
Q ss_pred c-ccccccccCCcchHHHHHHHHHHHHHhcC
Q 042277 107 R-FEMSDLEKGSMKPVINCLLNLRAEYITGG 136 (899)
Q Consensus 107 ~-F~~~DL~eg~~~~Vv~cl~aL~~~~~~~g 136 (899)
. +..-.|-.|++.--++-|.=+|.+++...
T Consensus 79 k~ipV~kLvKgk~QDNlEFlQWfkkf~d~n~ 109 (145)
T 4abo_I 79 KVVDPERLSRCKMQDNLEFVQWAKRFWDQYY 109 (145)
T ss_dssp CCCCHHHHTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CccCHHHHhccchHhHHHHHHHHHHHHHhcC
Confidence 7 55556888887777788888999988764
No 68
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=96.38 E-value=0.0055 Score=56.89 Aligned_cols=84 Identities=11% Similarity=0.248 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHh-hcCCC
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLG-KLGIS 106 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~-~~Gvp 106 (899)
-+..+..|....+.... ...-.+|-...+||..+|.|++++.|+.|.--.-.+ ....+|+..=+..++ ++|+|
T Consensus 4 ~k~~LL~W~q~~~~~y~---~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~---~~~~~n~~~af~~Ae~~lgi~ 77 (109)
T 1bkr_A 4 AKDALLLWCQMKTAGYP---NVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKK---SNAHYNLQNAFNLAEQHLGLT 77 (109)
T ss_dssp HHHHHHHHHHHHTTTCT---TCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCT---TCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHccCC---CCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCc---CCHHHHHHHHHHHHHHHcCCC
Confidence 35678999999887421 123467889999999999999999999884332111 235689988888776 89999
Q ss_pred c-ccccccccCC
Q 042277 107 R-FEMSDLEKGS 117 (899)
Q Consensus 107 ~-F~~~DL~eg~ 117 (899)
. .++-|+-.+.
T Consensus 78 ~ll~~eDv~~~~ 89 (109)
T 1bkr_A 78 KLLDPEDISVDH 89 (109)
T ss_dssp CCCCHHHHSSSS
T ss_pred ccCCHHHccCCC
Confidence 7 7777875544
No 69
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.31 E-value=0.62 Score=47.11 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAK 368 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k 368 (899)
+++.-++............++.+|.+-.
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFq 37 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQ 37 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454544445555555555554433
No 70
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=96.13 E-value=0.012 Score=56.10 Aligned_cols=100 Identities=12% Similarity=0.238 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHh-hcCCCc
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLG-KLGISR 107 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~-~~Gvp~ 107 (899)
+..+..|....+.... ...-.+|-...+||..+|.|++++.|+.|.--.-.+ ....+|+..=+..++ ++|+|.
T Consensus 9 k~~LL~W~q~~~~~y~---~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~---~~~~~n~~~af~~Ae~~Lgi~~ 82 (127)
T 1wyq_A 9 KDALLLWCQMKTAGYP---NVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKK---CNAHYNLQNAFNLAEKELGLTK 82 (127)
T ss_dssp THHHHHHHHHHHHTSS---SCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCS---SCCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCC---CCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCc---CCHHHHHHHHHHHHHHHcCCCc
Confidence 4568899998875321 112467888899999999999999999884322111 234689988888886 899997
Q ss_pred -ccccccccCC--cchHHHHHHHHHHHHHh
Q 042277 108 -FEMSDLEKGS--MKPVINCLLNLRAEYIT 134 (899)
Q Consensus 108 -F~~~DL~eg~--~~~Vv~cl~aL~~~~~~ 134 (899)
.++-|+-.+. -..|+.-+..|-.++..
T Consensus 83 ll~~eDv~~~~pDeksimtYvs~l~~~~~~ 112 (127)
T 1wyq_A 83 LLDPEDVNVDQPDEKSIITYVATYYHYFSK 112 (127)
T ss_dssp CSCTTTSCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHhccCCCcHHHHHHHHHHHHHHhhc
Confidence 7888885555 33555555555555543
No 71
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=96.03 E-value=0.51 Score=57.81 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhh-cCCCc-
Q 042277 30 ALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGK-LGISR- 107 (899)
Q Consensus 30 ~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~-~Gvp~- 107 (899)
..+..|....+... + ...-.+|-..++||.++|.|++.+.|+.|+--.-.+ ....+|....+..+++ +|+|.
T Consensus 124 ~~ll~W~~~~~~~~--~-~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~---~~~~~n~~~a~~~a~~~lg~~~~ 197 (863)
T 1sjj_A 124 EGLLLWYQRKTAPY--K-NVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRK---DDPLTNLNTAFDVAEKYLDIPKM 197 (863)
T ss_dssp TTTHHHHHHHHTTS--T-TCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGS---CCCGGGCTHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHhccCC--C-CCCCCCCccccccHHHHHHHHHHhCCCCcChhhCCC---CCHHHHHHHHHHHHHHhCCCCCc
Confidence 35889999877532 1 112457888999999999999999999985432222 2246899999998876 99998
Q ss_pred ccccccccCC
Q 042277 108 FEMSDLEKGS 117 (899)
Q Consensus 108 F~~~DL~eg~ 117 (899)
..+-|+-++.
T Consensus 198 l~~ed~~~~~ 207 (863)
T 1sjj_A 198 LDAEDIVGTA 207 (863)
T ss_dssp CCHHHHTTCS
T ss_pred cCHHHHhCCC
Confidence 6777876654
No 72
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=96.01 E-value=0.0029 Score=59.91 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHh-hcCCC
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLG-KLGIS 106 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~-~~Gvp 106 (899)
+++.+..|....+.... ...-.+|-...+||..+|.|++++.|+.|.--.-.+ ....+|+..-+..++ ++|+|
T Consensus 10 ~~~~LL~W~q~~~~~y~---~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~---~~~~~n~~~af~~Ae~~lgi~ 83 (121)
T 2d88_A 10 RSSKLLGWCQRQTDGYA---GVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDE---QNVEKNNQLAFDIAEKELGIS 83 (121)
T ss_dssp SSCHHHHHHHHHSTTSS---SCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCT---TCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhccCC---CCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcCc---cCHHHHHHHHHHHHHHHcCCC
Confidence 45578999999996421 112457888899999999999999999884322111 235789999888887 59999
Q ss_pred c-ccccccccC
Q 042277 107 R-FEMSDLEKG 116 (899)
Q Consensus 107 ~-F~~~DL~eg 116 (899)
. .++-|+-.+
T Consensus 84 ~lL~peD~~~~ 94 (121)
T 2d88_A 84 PIMTGKEMASV 94 (121)
T ss_dssp CSSCHHHHHHS
T ss_pred CcCCHHHHhcc
Confidence 8 677777653
No 73
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=95.96 E-value=0.006 Score=57.22 Aligned_cols=83 Identities=19% Similarity=0.363 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhh-cCCC
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGK-LGIS 106 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~-~Gvp 106 (899)
.+..+..|....+.... ...-.+|-...+||..+|.|++++.|+.|.--.- ......+|...=+..+++ +|+|
T Consensus 8 ~~~~LL~W~q~~~~~y~---~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l---~~~~~~~n~~~af~~Ae~~lgi~ 81 (116)
T 1wyl_A 8 TQEELLRWCQEQTAGYP---GVHVSDLSSSWADGLALCALVYRLQPGLLEPSEL---QGLGALEATAWALKVAENELGIT 81 (116)
T ss_dssp SHHHHHHHHHHHHHHST---TCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCSSG---GGCCHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhccCC---CCCCCCccccccccHHHHHHHHHHCcCCCCHHHh---ccCCHHHHHHHHHHHHHHHcCCc
Confidence 35678999999875321 1124578889999999999999999998853221 112356899988888876 9999
Q ss_pred c-ccccccccC
Q 042277 107 R-FEMSDLEKG 116 (899)
Q Consensus 107 ~-F~~~DL~eg 116 (899)
. .++-|+-.+
T Consensus 82 ~lL~peD~~~~ 92 (116)
T 1wyl_A 82 PVVSAQAVVAG 92 (116)
T ss_dssp CCSCHHHHHHT
T ss_pred cccCHHHHhcC
Confidence 8 777787555
No 74
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=95.77 E-value=0.015 Score=61.68 Aligned_cols=98 Identities=17% Similarity=0.340 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCC-CCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhh-cCCC
Q 042277 29 RALLIEWLNSILPNL-NFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGK-LGIS 106 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~-~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~-~Gvp 106 (899)
+..+..|....+... .. .-.+|-..++||.+||.|++.+.|+.|.--.-.+ ....+|...-+..+++ +|+|
T Consensus 142 ~~~LL~W~~~~~~~y~~v----~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~~---~~~~~n~~~a~~~A~~~lGi~ 214 (254)
T 1wku_A 142 KEGLLLWCQRKTAPYRNV----NVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRK---DDPIGNLNTAFEVAEKYLDIP 214 (254)
T ss_dssp HHHHHHHHHHHHTTCTTC----CCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCCT---TCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHccCCCCC----cCCCCccchhhHHHHHHHHHHHCCCcccccccCc---CCHHHHHHHHHHHHHHHcCCC
Confidence 457899999887532 22 2457888899999999999999999985322111 2357899999999985 9999
Q ss_pred c-ccccccccCC-c--chHHHHHHHHHHHHH
Q 042277 107 R-FEMSDLEKGS-M--KPVINCLLNLRAEYI 133 (899)
Q Consensus 107 ~-F~~~DL~eg~-~--~~Vv~cl~aL~~~~~ 133 (899)
. ..+.|+-++. . ..|+..+..|-.++.
T Consensus 215 ~~l~peDiv~~~~pD~k~imtyva~l~~~~~ 245 (254)
T 1wku_A 215 KMLDAEDIVNTPKPDEKAIMTYVSCFYHAFA 245 (254)
T ss_dssp CCSCHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHhccCCCcHHHHHHHHHHHHHHhh
Confidence 8 7788886664 2 344444444544443
No 75
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=95.64 E-value=0.017 Score=60.88 Aligned_cols=81 Identities=12% Similarity=0.252 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhh-cCCCc
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGK-LGISR 107 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~-~Gvp~ 107 (899)
+..+..|....+... .-.+|...++||.++|.|++.+.|+.|+..... ......+|...-+..+++ +|+|.
T Consensus 145 ~~~LL~W~~~~~~~~------~v~nFs~s~~dG~a~~aLi~~~~P~~i~~~~~l--~~~~~~~n~~~a~~~A~~~lGi~~ 216 (245)
T 2wa7_A 145 KQRLLGWIQNKIPYL------PITNFNQNWQDGKALGALVDSCAPGLCPDWESW--DPQKPVDNAREAVQQADDWLGVPQ 216 (245)
T ss_dssp HHHHHHHHHHHSTTS------CCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGS--CTTCHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhCCCC------CCCCCcccchhhHHHHHHHHHHCcccccccccc--CcccHHHHHHHHHHHHHHhCCCCc
Confidence 567899999987642 234688889999999999999999998543311 112357899998999987 99998
Q ss_pred -ccccccccCC
Q 042277 108 -FEMSDLEKGS 117 (899)
Q Consensus 108 -F~~~DL~eg~ 117 (899)
..+-|+-++.
T Consensus 217 ~l~peDi~~~~ 227 (245)
T 2wa7_A 217 VITPEEIIHPD 227 (245)
T ss_dssp SSCHHHHTCTT
T ss_pred cCCHHHhccCC
Confidence 6777887765
No 76
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=95.62 E-value=0.0072 Score=56.88 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHh-hcCCC
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLG-KLGIS 106 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~-~~Gvp 106 (899)
-+..+..|....+..... ..-.+|-...+||..+|.|++++.|+.|.--.-.+ ....+|+..=+..++ ++|+|
T Consensus 9 ~~~~LL~W~q~~~~~y~~---v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~---~~~~~n~~~af~~Ae~~lgi~ 82 (118)
T 1bhd_A 9 SEKILLSWVRQTTRPYSQ---VNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVK---MSPIERLEHAFSKAQTYLGIE 82 (118)
T ss_dssp HHHHHHHHHHHHHTTSTT---CCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHH---SCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhccCCC---CCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhCc---CCHHHHHHHHHHHHHHHcCCC
Confidence 356789999999864211 12467888899999999999999999885222111 124688888777776 99999
Q ss_pred c-ccccccccCC
Q 042277 107 R-FEMSDLEKGS 117 (899)
Q Consensus 107 ~-F~~~DL~eg~ 117 (899)
. .++-|+-.+.
T Consensus 83 ~ll~~eDv~~~~ 94 (118)
T 1bhd_A 83 KLLDPEDVAVRL 94 (118)
T ss_dssp CCSCHHHHHTSC
T ss_pred cccCHHHhhcCC
Confidence 8 7777875554
No 77
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.047 Score=52.01 Aligned_cols=100 Identities=18% Similarity=0.321 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc--ccccccCCCcchhhhhHHHHHHHHhhcCC
Q 042277 28 QRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASV--DEANYSYNSSMSRSGKIARFLTTLGKLGI 105 (899)
Q Consensus 28 r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv--~ki~~~~~~~~~~~ENI~~FL~a~~~~Gv 105 (899)
-|.|++.||...+.... ..-|+ |.+|.+.|.+++.|. |.| .||.-.+.....+..|-.-+-.+..++|+
T Consensus 11 sR~elL~WiN~~L~~n~----~kiEe----l~tGaayCQl~d~l~-g~v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I 81 (127)
T 2qjx_A 11 SRTELLTWLNGLLNLNY----KKIEE----CGTGAAYCQIMDSIY-GDLPMNRVKFNATAEYEFQTNYKILQSCFSRHGI 81 (127)
T ss_dssp CHHHHHHHHHHHHTCCC----CSGGG----GGGSHHHHHHHHHHH-CCSCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHcCCc----cHHHH----ccchHHHHHHHhhhc-cccCccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 47899999999998532 12333 689999999999999 555 44543333334566888888889999999
Q ss_pred Cc-ccccccccCCcchHHHHHHHHHHHHHhcC
Q 042277 106 SR-FEMSDLEKGSMKPVINCLLNLRAEYITGG 136 (899)
Q Consensus 106 p~-F~~~DL~eg~~~~Vv~cl~aL~~~~~~~g 136 (899)
+. +..-.|-.|++---.+=|.=+|.+++...
T Consensus 82 ~k~ipV~kLvKgrfQDNlEFlQWfkkf~d~n~ 113 (127)
T 2qjx_A 82 EKTVYVDKLIRCKFQDNLEFLQWLKKHWIRHK 113 (127)
T ss_dssp CCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCccCHHHHhccCchhHHHHHHHHHHHHHhcC
Confidence 96 55555888887666777788899988764
No 78
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=95.16 E-value=0.016 Score=60.94 Aligned_cols=83 Identities=16% Similarity=0.343 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhh-cCCCc
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGK-LGISR 107 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~-~Gvp~ 107 (899)
+..+..|....+.... ...-.+|-...+||.++|.|++.+.|+.|+--.-.+ ....+|....+..+++ +|+|.
T Consensus 135 ~~~LL~W~~~~~~~~~---~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~~---~~~~~n~~~a~~~a~~~lGi~~ 208 (245)
T 1sh5_A 135 KEKLLLWSQRMVEGYQ---GLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYR---QTNLENLDQAFSVAERDLGVTR 208 (245)
T ss_dssp HHHHHHHHHHHTTTST---TCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHHH---SCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhccCC---CcccCCccccccchHHHHHHHHHHCCCCCCHHHccc---CCHHHHHHHHHHHHHHhCCCCc
Confidence 4568999999886421 112456888899999999999999999886322111 1257899999999986 99997
Q ss_pred -ccccccccCC
Q 042277 108 -FEMSDLEKGS 117 (899)
Q Consensus 108 -F~~~DL~eg~ 117 (899)
..+-|+..+.
T Consensus 209 ~l~peDi~~~~ 219 (245)
T 1sh5_A 209 LLDPEDVDVPQ 219 (245)
T ss_dssp CCCHHHHSSSS
T ss_pred cCCHHHhccCC
Confidence 6777876554
No 79
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=94.86 E-value=0.021 Score=60.20 Aligned_cols=85 Identities=16% Similarity=0.309 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHh-hcCCCc
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLG-KLGISR 107 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~-~~Gvp~ 107 (899)
+..+..|....+.... ...-.+|...++||.++|.|++.+.|+.|.--... ......+|....+..++ ++|+|.
T Consensus 137 ~~~LL~W~~~~~~~~~---~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~~--~~~~~~~n~~~a~~~A~~~lGi~~ 211 (246)
T 1dxx_A 137 EKILLSWVRQSTRNYP---QVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVV--SQQSATQRLEHAFNIARYQLGIEK 211 (246)
T ss_dssp HHHHHHHHHHHHTTCT---TCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH--TCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhccCC---CCCcCCCcccchhHHHHHHHHHHHCcCccchhhhc--ccCCHHHHHHHHHHHHHHhCCCCc
Confidence 4578999998886431 12346788899999999999999999988532211 01224689999999887 899997
Q ss_pred -ccccccccCCc
Q 042277 108 -FEMSDLEKGSM 118 (899)
Q Consensus 108 -F~~~DL~eg~~ 118 (899)
..+-|+..+..
T Consensus 212 ~l~peDi~~~~p 223 (246)
T 1dxx_A 212 LLDPEDVDTTYP 223 (246)
T ss_dssp CCCHHHHSSSSC
T ss_pred cCCHHHhhcCCC
Confidence 77788876653
No 80
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=94.53 E-value=0.051 Score=58.23 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhh-cCCCc
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGK-LGISR 107 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~-~Gvp~ 107 (899)
+..+..|....++.. .-.+|-...+||..+|.|++.+.|+.|+...... . ....+|...-+..+++ +|+|.
T Consensus 172 k~~LL~W~n~~~~~~------~I~nFs~sw~DG~af~aLi~~~~P~li~d~~~l~-~-~~~~~n~~~Af~~Ae~~lGi~~ 243 (272)
T 3hoc_A 172 KQRLLGWIQNKLPQL------PITNFSRDWQSGRALGALVDSCAPGLCPDWDSWD-A-SKPVTNAREAMQQADDWLGIPQ 243 (272)
T ss_dssp HHHHHHHHHHHCTTS------CCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC-T-TCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhhCCCC------CCCChhhcccchHHHHHHHHHhCcccccchhhcC-c-cCHHHHHHHHHHHHHHhCCCCc
Confidence 667999999876532 2346888889999999999999999986433111 1 2357999999999987 99998
Q ss_pred -ccccccccCC
Q 042277 108 -FEMSDLEKGS 117 (899)
Q Consensus 108 -F~~~DL~eg~ 117 (899)
..+-|+-.+.
T Consensus 244 ll~peDiv~~~ 254 (272)
T 3hoc_A 244 VITPEEIVDPN 254 (272)
T ss_dssp SSCHHHHTCTT
T ss_pred cCCHHHhccCC
Confidence 6667776543
No 81
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.21 E-value=0.84 Score=57.67 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 042277 346 LMKEKDQQMLENLALKQELEMAKKTYELRCLHME 379 (899)
Q Consensus 346 l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le 379 (899)
|....+..+.++..|++++..+...++.++..|+
T Consensus 933 Lq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~ 966 (1080)
T 2dfs_A 933 LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966 (1080)
T ss_dssp ------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333344444444444444444455554443
No 82
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.88 E-value=0.023 Score=72.56 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=0.0
Q ss_pred hhhhhhhhhcCCC
Q 042277 489 RRLFNEVQDLKGN 501 (899)
Q Consensus 489 R~l~N~iqelkGn 501 (899)
+.|..++++++..
T Consensus 1147 ~~L~~ele~L~~~ 1159 (1184)
T 1i84_S 1147 RDLSEELEALKTE 1159 (1184)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.77 E-value=0.0096 Score=58.57 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=38.8
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
.++||.....+..|.+++..+..++.++--.....++-||++||||||.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 367888776666788888888888776543334567789999999999874
No 84
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.75 E-value=0.055 Score=69.09 Aligned_cols=7 Identities=14% Similarity=0.074 Sum_probs=3.6
Q ss_pred ccccccC
Q 042277 110 MSDLEKG 116 (899)
Q Consensus 110 ~~DL~eg 116 (899)
..||.++
T Consensus 523 ~~~lie~ 529 (1184)
T 1i84_S 523 CIELIER 529 (1184)
T ss_dssp HHHTTSC
T ss_pred HHHHHhC
Confidence 4455554
No 85
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=93.68 E-value=0.09 Score=58.24 Aligned_cols=81 Identities=12% Similarity=0.237 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHHhh-cCCCc
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTLGK-LGISR 107 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~~~-~Gvp~ 107 (899)
+..+..|....+.... -.+|-...+||.+||.|++.+.||.++....-. . ....+|...-+..+++ +|+|.
T Consensus 142 k~~LL~W~~~~~~~~~------v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~l~-~-~~~~~n~~~Af~~Ae~~lGip~ 213 (347)
T 4b7l_A 142 KQRLLGWIQNKIPYLP------ITNFNQNWQDGKALGALVDSCAPGLCPDWESWD-P-QKPVDNAREAMQQADDWLGVPQ 213 (347)
T ss_dssp HHHHHHHHHHHCTTSC------CCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC-T-TCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhhCCCcc------cCCCCCCccchHHHHHHHHHhCCccccchhhcC-c-CCHHHHHHHHHHHHHHhcCCCc
Confidence 5679999999876432 356788899999999999999999986433111 1 2346898887777765 99998
Q ss_pred -ccccccccCC
Q 042277 108 -FEMSDLEKGS 117 (899)
Q Consensus 108 -F~~~DL~eg~ 117 (899)
..+-|+-.+.
T Consensus 214 ll~peDi~~~~ 224 (347)
T 4b7l_A 214 VITPEEIIHPD 224 (347)
T ss_dssp SSCHHHHTCTT
T ss_pred ccCHHHcCCCC
Confidence 6778886655
No 86
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.07 E-value=5.2 Score=42.05 Aligned_cols=34 Identities=3% Similarity=0.031 Sum_probs=13.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 441 ELRFSSDSIKQEISKAQKSHADDLYCLGVRLKAL 474 (899)
Q Consensus 441 ~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l 474 (899)
++...+..++.++...+..+...+..+...+..+
T Consensus 129 ~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 129 DLKKEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433333
No 87
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.62 E-value=9.6 Score=38.51 Aligned_cols=37 Identities=27% Similarity=0.230 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhcCC
Q 042277 464 LYCLGVRLKALAGAAENYHAVLAENRRLFNEVQDLKG 500 (899)
Q Consensus 464 ~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqelkG 500 (899)
+.+++..+...++.-.-....+.++-.|--++|.|+.
T Consensus 132 leD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkd 168 (189)
T 2v71_A 132 LEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKD 168 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333444445555555555555544
No 88
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=92.36 E-value=0.11 Score=56.44 Aligned_cols=82 Identities=16% Similarity=0.337 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcchhhhhHHHHHHHH-hhcCCCc
Q 042277 29 RALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSMSRSGKIARFLTTL-GKLGISR 107 (899)
Q Consensus 29 ~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~~~~ENI~~FL~a~-~~~Gvp~ 107 (899)
+..+..|....+.... ...-.+|-...+||.++|.|++.+.|+.|.--.-.+ ....+|...-+..+ +++|+|.
T Consensus 191 k~~LL~W~n~~~~~y~---~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~---~~~~~N~~~Af~~Ae~~LGi~~ 264 (296)
T 3f7p_A 191 KEKLLLWSQRMVEGYQ---GLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYR---QTNLENLDQAFSVAERDLGVTR 264 (296)
T ss_dssp HHHHHHHHHHHTTTST---TCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTT---SCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhcCCC---CCcCCCccccccccHHHHHHHHHHCcCccCHHHcCc---ccHHHHHHHHHHHHHHhCCCCc
Confidence 4568999999886421 112356778899999999999999999885322111 13478999999999 4799998
Q ss_pred -ccccccccC
Q 042277 108 -FEMSDLEKG 116 (899)
Q Consensus 108 -F~~~DL~eg 116 (899)
..+-|+-.+
T Consensus 265 ll~pEDi~~~ 274 (296)
T 3f7p_A 265 LLDPEDVDVP 274 (296)
T ss_dssp CCCHHHHSSS
T ss_pred cCCHHHhcCC
Confidence 566777544
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.34 E-value=0.027 Score=56.17 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=36.1
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcCCC-eeEeeccccCCcccceee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYN-VCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN-~cIfAYGQTGSGKTyTM~ 596 (899)
.++||.+...+..+..++..+..++...-.+.. ..|+-||++|+||||.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 457887766555677777766666665433332 678899999999999864
No 90
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.86 E-value=1.1 Score=52.23 Aligned_cols=10 Identities=30% Similarity=0.175 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 042277 355 LENLALKQEL 364 (899)
Q Consensus 355 ~e~~~LkqeL 364 (899)
.++..+++++
T Consensus 463 ~~i~~l~~~~ 472 (597)
T 3oja_B 463 AEVQQLTNEQ 472 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.61 E-value=9.6 Score=53.24 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=20.1
Q ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 042277 805 GQAKTLMFVQLNPDVNSYSESLSTLKFAERV 835 (899)
Q Consensus 805 GnskT~mI~~ISP~~~~~~ETlsTL~FA~R~ 835 (899)
.++.|=+|+.+||..+-.. .-.+||.+.
T Consensus 2641 s~~~tPlifilSpG~DP~~---~l~~lA~~~ 2668 (3245)
T 3vkg_A 2641 VKSSSPLLLCSVPGYDASS---KVDDLALQL 2668 (3245)
T ss_dssp SCTTSCEECEECTTCCCHH---HHHHHHHHH
T ss_pred CCCCccEEEEeCCCCChHH---HHHHHHHHh
Confidence 3566778889999877544 556788765
No 92
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.09 E-value=1 Score=51.28 Aligned_cols=77 Identities=25% Similarity=0.458 Sum_probs=48.3
Q ss_pred EEeceeeCCCCChhhHHhch-HHHHH-HHHc--CC--CeeEeeccccCCccccee--------------ecCCCCCCCcc
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLIR-SVLD--GY--NVCIFAYGQTGSGKTYTM--------------SGPSGPHEEDW 606 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV~-svLd--Gy--N~cIfAYGQTGSGKTyTM--------------~G~~~~~~~~~ 606 (899)
-+||-|-|-+.--+++.+.+ .|+-. ..+. |. .-.|+-||+.|+|||++. .|+. -.....
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~-l~~~~~ 247 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE-FVHKYL 247 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG-TCCSSC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch-hhcccc
Confidence 56777776655445555543 34432 3333 32 334999999999999654 2221 123446
Q ss_pred chhHHHHHHHHHhhhccC
Q 042277 607 GVNYRALNDLFNLSQNRR 624 (899)
Q Consensus 607 GIipRal~~LF~~~~~~~ 624 (899)
|-..+.++++|.......
T Consensus 248 Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARENA 265 (428)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHcC
Confidence 888999999999776544
No 93
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.03 E-value=3.4 Score=52.21 Aligned_cols=15 Identities=20% Similarity=0.291 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 042277 354 MLENLALKQELEMAK 368 (899)
Q Consensus 354 ~~e~~~LkqeL~~~k 368 (899)
..|++.|+.+++.++
T Consensus 959 ~~e~~~L~~~l~~le 973 (1080)
T 2dfs_A 959 STETEKLRSDVERLR 973 (1080)
T ss_dssp HHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444544444433
No 94
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=90.96 E-value=0.33 Score=51.68 Aligned_cols=266 Identities=15% Similarity=0.124 Sum_probs=128.1
Q ss_pred hhhhhhhhcCCCEEEEEecCCCCCCCCCCCceEEEEccCCeEEecCCCCCCCCCceeEEeceeeCCC--CChhhHHhchH
Q 042277 490 RLFNEVQDLKGNIRVYCRIRPFLPGQTKKQTTIEYIGENGELIFGNPSKPGKDGQRMFKFNKVFGPD--ATQAEVFSDTQ 567 (899)
Q Consensus 490 ~l~N~iqelkGnIrV~~RVRP~~~~E~~~~~~v~~~~~~~~v~i~~p~~~~~~~~k~F~FD~VF~~~--atQeeVF~~v~ 567 (899)
-|.|.|.|+||.||.|+=+-+-. -.....+...++.+.- ....++|.|+||.+.. ..++-+|++.+
T Consensus 3 ~LeNSIdElkG~iRcFAYi~e~~-----l~~~~~IdY~~~tI~~-------~~~~~~y~F~RiIp~~~~~e~~ll~qE~~ 70 (275)
T 4gkp_A 3 MLLNSITELKGCARLFANIIEDE-----ISEKLIVNYSDESIED-------MKNHKTYKFTKLIQNFSHQNKDLFKEDLH 70 (275)
T ss_dssp -------------CEEEEEETTT-----SCTTEEEETTTTEEEE-------TTTTEEEECSEEEEECSSSCCCGGGTHHH
T ss_pred cccccHHHhcCcEEEEEEEcccc-----CCccEEEecccceecc-------CCCccEEEEEeeeccccCCHHHHHHHHHH
Confidence 36799999999999999885421 1122444455555531 1235789999999655 33444556799
Q ss_pred HHHHHHH-cCCCeeEeeccccCCcccceeecCCCCCCCccchhHHHHHHHHHhhhccCCCeeEEEEEEEEEEecccc-cc
Q 042277 568 PLIRSVL-DGYNVCIFAYGQTGSGKTYTMSGPSGPHEEDWGVNYRALNDLFNLSQNRRSSIMYEVAVQMVEIYNEQV-RD 645 (899)
Q Consensus 568 pLV~svL-dGyN~cIfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V-~D 645 (899)
+..+.+| .+.|+.||..++.- -+-+....+..+... -...|.+.++++=+-.+.. -|
T Consensus 71 ~Y~DmCL~k~~NfnlISiS~~~----------------~~~lr~~ll~f~~~~-----y~~~y~itlQ~V~Ls~~~~S~D 129 (275)
T 4gkp_A 71 VYIDFCLKRRENFNLFSVGSSN----------------IPNTFEKLLAFFKNN-----YFDKFVITLQYVMLSDNADSQD 129 (275)
T ss_dssp HHHHHHHHTTCCEEEEEECCSS----------------CCSHHHHHHHHHHHH-----TTTTEEEEEEEEEEC----CEE
T ss_pred HHHHHHhccCCCceEEEecCCC----------------cHHHHHHHHHHHHHh-----ccccceEEEEEEEecCCCcccc
Confidence 9999999 79999999887532 112444455555442 2235888998887776654 58
Q ss_pred cccCcchhhhhhhhcccccccceeccCCCceeecCCcEEecCCHHHHHHHHHHHHhcccccccCCCCCCCCceeEEEEEE
Q 042277 646 LLTNDVFWILAICFLDLHTLGIMSTSQPNGLAVPDASMHPVTSTEDVLELMDIGLKNRAIGATALNERSSRSHSVVTVHV 725 (899)
Q Consensus 646 LL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~~lt~~~V~s~ee~~~lL~~g~~~R~~~sT~~N~~SSRSH~IftI~v 725 (899)
||........ ..++...-..+.+.+ +-+.+.+.+..+...+. -..-+......-.|+++.+
T Consensus 130 ll~~~~~~~~--------d~eI~Lk~e~~sI~l-dS~~i~i~~~~~~~~~~----------~~~~~~~~~~Gi~IlKfq~ 190 (275)
T 4gkp_A 130 LLSNNKDGGK--------DVEIKLKIEESTISL-GSTLITLDEITDKLQIK----------KKYSQLNHQNGIGLSKFQF 190 (275)
T ss_dssp TTCC------------------CEEECSSCEEE-CSCCEEGGGCCSCC--C----------CSCC-----CCEEEEEEEE
T ss_pred cccCCccccC--------CcceeEEeecceeee-cceEEEeccCccccchh----------hhccCCCCCCCceEEEEEE
Confidence 8865432110 000111111111111 11222222211111110 0001111222344777777
Q ss_pred EeecCCCCCceeeEEEEEecCCCCCcccccchhhhHHHHHHhhhhHHHHHHHHHHHccCCCCCCCCCChhhHhhhhhcCC
Q 042277 726 RGKDLKTGIPLHGNLHLVDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGG 805 (899)
Q Consensus 726 ~~~~~~~~~~~~skL~lVDLAGSEr~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hVPYRdSKLT~LLqdsLGG 805 (899)
..++... ...-.++||.+-+..- ...|.+++. ... +-.|+++-+|+.-| .
T Consensus 191 ~~~~~~e--~~pidfYFiei~~~~t--------------------~~~L~~~~s----~~~---~~~spi~~iLk~LL-~ 240 (275)
T 4gkp_A 191 FCLQDIE--PIPIDFYFIEIYQPSI--------------------YPILKRSTG----TES---NLNSPLEIVLKKIF-H 240 (275)
T ss_dssp EETTCSS--CCCEEEEEEEECCGGG--------------------HHHHHHC---------------CHHHHHHHHHH-H
T ss_pred EeccCCC--CCceeEEEEEecCHHH--------------------HHHHHhccC----CCC---CCCCcHHHHHHHHH-h
Confidence 6554322 2223688998876431 333433322 111 11288888887666 4
Q ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHhcCcccc
Q 042277 806 QAKTLMFVQLNPDVNSYSESLSTLKFAERVSGVELG 841 (899)
Q Consensus 806 nskT~mI~~ISP~~~~~~ETlsTL~FA~R~k~v~~~ 841 (899)
.+|.+++.++.-. .+ .-..|..+.++.++.+-
T Consensus 241 ~TKS~flfni~~~-~n---~~~lL~ls~~l~~~~~~ 272 (275)
T 4gkp_A 241 DTKSAFVFQIDHS-AE---VYDILKLSSHLSFIRNP 272 (275)
T ss_dssp HSBCCEEEEESSC-TT---HHHHHHHHHHHTTCCCC
T ss_pred cCcceEEEEccCc-ch---HHHHHHHHHHhccccCc
Confidence 6788899999743 22 33678889888888653
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.74 E-value=13 Score=51.93 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=11.6
Q ss_pred cccccCC-cchHHHHHHHHHHHHHhcC
Q 042277 111 SDLEKGS-MKPVINCLLNLRAEYITGG 136 (899)
Q Consensus 111 ~DL~eg~-~~~Vv~cl~aL~~~~~~~g 136 (899)
.+||.+. +..++ -+++..+...|
T Consensus 1734 P~LF~~dE~~~i~---~~~r~~a~~~g 1757 (3245)
T 3vkg_A 1734 PGLFEGEEFTALM---HACKETAQRNG 1757 (3245)
T ss_dssp TTSSCTTTHHHHH---HHHHHHHHHTT
T ss_pred cccCCHHHHHHHH---HHHHHHHHhcC
Confidence 3455554 44443 34555565555
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.97 E-value=0.069 Score=57.84 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=34.9
Q ss_pred EEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 547 FKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
++||.+......+..++..+..++...-.+....|+-||++|+||||.+.+
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 567765544445566666555666654444456788899999999998854
No 97
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.56 E-value=2.2 Score=39.99 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEY 382 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~ 382 (899)
+++.....-+-+++..+.+|++||.-+|+.|++++.+|.+++
T Consensus 76 K~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 76 QDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555667788899999999999999999888877653
No 98
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.20 E-value=0.86 Score=51.91 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=51.4
Q ss_pred eEEeceeeCCCCChhhHHhch-HHHHH-HHHc--CC--CeeEeeccccCCccccee--------------ecCCCCCCCc
Q 042277 546 MFKFNKVFGPDATQAEVFSDT-QPLIR-SVLD--GY--NVCIFAYGQTGSGKTYTM--------------SGPSGPHEED 605 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v-~pLV~-svLd--Gy--N~cIfAYGQTGSGKTyTM--------------~G~~~~~~~~ 605 (899)
.-+||.|-+.+..-+++.+.+ .|+.. ..+. |. .-.|+-||+.|+|||++. .|+. -....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~-l~~~~ 255 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ-LVQMY 255 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG-GCSSC
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh-hhhcc
Confidence 356888887776666666654 56652 3443 32 346889999999999654 2221 12234
Q ss_pred cchhHHHHHHHHHhhhccCC
Q 042277 606 WGVNYRALNDLFNLSQNRRS 625 (899)
Q Consensus 606 ~GIipRal~~LF~~~~~~~~ 625 (899)
.|--.+.++.+|........
T Consensus 256 vGese~~ir~lF~~A~~~aP 275 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKAP 275 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHCS
T ss_pred cchHHHHHHHHHHHHHhcCC
Confidence 57788999999987765443
No 99
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.18 E-value=7.6 Score=36.28 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=24.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 439 LRELRFSSDSIKQEISKAQKSHADDLYCLGVR 470 (899)
Q Consensus 439 l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~ 470 (899)
--+|+..+.+++.++..+++.|.+++..|...
T Consensus 85 r~dLE~~iesL~eEl~FLKk~heeEl~eLq~q 116 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKKLHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888889999999998887766544
No 100
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.06 E-value=22 Score=35.19 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHH
Q 042277 432 MDLQHGALRELRFSSDSIKQEISKA---QKSHADDLYCLGVR 470 (899)
Q Consensus 432 ~~~~~~~l~~l~~~~~~~k~~~~~~---q~~~~~~~~~l~~~ 470 (899)
+...+..+..|...+..+|....+. .+...+.+..|+..
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666544332 33445555555543
No 101
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.52 E-value=20 Score=34.37 Aligned_cols=32 Identities=25% Similarity=0.128 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAKKTYEL 373 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~ 373 (899)
+...+..+.+....|+..||.+|..++...+.
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~ 107 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAES 107 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777777666654443
No 102
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.16 E-value=11 Score=35.54 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 042277 389 FEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDL 464 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~ 464 (899)
+...++.|+..++.++++...|+. .+...+..+...+...+..|..|+..+..+|+++...-..|.+-+
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~-------~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQN-------AIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444332 333444455556666777788999999999999998888887543
No 103
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.25 E-value=31 Score=34.13 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh---HHHHHHHHHHHHHHHHhHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSG---FEERIKELEHLLQVSRNKVRE 409 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~---le~~i~ele~~l~~~~~~~~~ 409 (899)
|+.+-....++...|+......|...+...+.++..|.+.+...+.. -.+.+.|++..+..+..+++.
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~ 108 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKH 108 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666667777777777777666665533 334444555555544444443
No 104
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.64 E-value=10 Score=35.93 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 042277 388 GFEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDL 464 (899)
Q Consensus 388 ~le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~ 464 (899)
++...++.|+..++.++++...|+. .+...+..+...+...+..|..|+..+..+|.++......|.+-+
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~-------~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLEN-------SLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444433 333444455556666777788999999999999998888887543
No 105
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.26 E-value=1.6 Score=41.56 Aligned_cols=100 Identities=19% Similarity=0.333 Sum_probs=69.6
Q ss_pred cCCchHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCccccccccCCCcc-hhhhhHHHHH
Q 042277 19 NINSEVEAKQRALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASVDEANYSYNSSM-SRSGKIARFL 97 (899)
Q Consensus 19 ~~~~~~~a~r~~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv~ki~~~~~~~~-~~~ENI~~FL 97 (899)
|-..+....-+.++..||.. ++ ++ ....+++--+.||.++.+++.+..|..|.--+..+..+. +.+.|=..|-
T Consensus 7 ~~~~~l~~ee~~el~~WL~~-l~---Ls--~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln 80 (127)
T 2ee7_A 7 GMASSVDEEALHQLYLWVDN-IP---LS--RPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLN 80 (127)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-SC---CS--CCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHc-CC---CC--CCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHH
Confidence 33344456667899999994 22 22 234567888999999999999999999988887776554 4568998884
Q ss_pred -HHHhhcCCCcccccc---cccCC---cchHHHHH
Q 042277 98 -TTLGKLGISRFEMSD---LEKGS---MKPVINCL 125 (899)
Q Consensus 98 -~a~~~~Gvp~F~~~D---L~eg~---~~~Vv~cl 125 (899)
+...++|++ |...| +-.|+ ..+|+.+|
T Consensus 81 ~kvl~kl~~~-l~~~~i~~i~~~~~Gaie~lL~~L 114 (127)
T 2ee7_A 81 RKVLKRLNFS-VPDDVMRKIAQCAPGVVELVLIPL 114 (127)
T ss_dssp HHTTGGGTCC-CCHHHHHHHHTTCTTTTHHHHHHH
T ss_pred HHHHHHcCCC-CCHHHHHHHHhCCCCHHHHHHHHH
Confidence 788999984 33333 33344 44555555
No 106
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.80 E-value=20 Score=41.14 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=11.0
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHH
Q 042277 377 HMETEYKGAKSGFEERIKELEHLL 400 (899)
Q Consensus 377 ~le~~~~~~~~~le~~i~ele~~l 400 (899)
++++.+.+.-.+|+++|+.|+..+
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555444444
No 107
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.21 E-value=47 Score=34.63 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=11.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 042277 439 LRELRFSSDSIKQEISKAQKSHADDLYCL 467 (899)
Q Consensus 439 l~~l~~~~~~~k~~~~~~q~~~~~~~~~l 467 (899)
+.+++..+...+.++.........+...+
T Consensus 134 l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 134 MLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333333333
No 108
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.10 E-value=0.29 Score=50.92 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=22.4
Q ss_pred EEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 547 FKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
|+||.+.+.+. ....+...+..+.. .+..|+-||++|+|||+..
T Consensus 3 ~~f~~~ig~~~----~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 3 EYKDNLLGEAN----SFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -------CCCH----HHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred cccccceeCCH----HHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 78888876443 33333333333332 3467888999999999875
No 109
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.63 E-value=21 Score=39.54 Aligned_cols=31 Identities=19% Similarity=0.616 Sum_probs=25.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 042277 254 NGEIPHRVACLLRKVVQEIERRISTQADHLRTQ 286 (899)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 286 (899)
+--+|. =|-|++++.+.|+.+.+.++.|++.
T Consensus 45 G~kCPs--GCrLqg~Ldk~er~~~~rIe~L~~~ 75 (390)
T 1deq_A 45 NTKCPS--GCRMKGLIDEVDQDFTSRINKLRDS 75 (390)
T ss_pred cCCCCc--cchHHHHHHHhhhhHHHHHHHHHHH
Confidence 444688 4999999999999999888888764
No 110
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.33 E-value=6.1 Score=44.50 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=50.2
Q ss_pred EEeceeeCCCCChhhHHhch-HHHH-HHHHc--CC--CeeEeeccccCCccccee--------------ecCCCCCCCcc
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLI-RSVLD--GY--NVCIFAYGQTGSGKTYTM--------------SGPSGPHEEDW 606 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV-~svLd--Gy--N~cIfAYGQTGSGKTyTM--------------~G~~~~~~~~~ 606 (899)
-+||.|-|-+.--+++-+.+ -|+. ...+. |. .-.|+-||+.|+|||.+. .|+. -...-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~-l~sk~v 223 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE-LVQKYI 223 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG-GSCSST
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH-hhcccc
Confidence 56777777665555555554 4654 24443 32 346999999999999764 2221 122345
Q ss_pred chhHHHHHHHHHhhhccCC
Q 042277 607 GVNYRALNDLFNLSQNRRS 625 (899)
Q Consensus 607 GIipRal~~LF~~~~~~~~ 625 (899)
|--.+.++.+|........
T Consensus 224 Gese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 224 GEGSRMVRELFVMAREHAP 242 (405)
T ss_dssp THHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHHhCC
Confidence 7788999999998765543
No 111
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.87 E-value=0.35 Score=48.53 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=27.5
Q ss_pred EEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 547 FKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
++||.+++. ..+..++..+..++. .+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 456665552 223444444333322 3356778899999999998773
No 112
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.58 E-value=4.4 Score=46.14 Aligned_cols=78 Identities=19% Similarity=0.355 Sum_probs=48.5
Q ss_pred EEeceeeCCCCChhhHHhch-HHHH-HHHHc--CC--CeeEeeccccCCccccee--------------ecCCCCCCCcc
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLI-RSVLD--GY--NVCIFAYGQTGSGKTYTM--------------SGPSGPHEEDW 606 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV-~svLd--Gy--N~cIfAYGQTGSGKTyTM--------------~G~~~~~~~~~ 606 (899)
.+||.|-|-+..-+++.+.+ -|+- ...+. |. .-.|+-||+.|+|||++. .|+. -.....
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~-l~sk~~ 256 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG-IVDKYI 256 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG-TCCSSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh-hccccc
Confidence 55777776554444555443 4544 23443 32 346899999999999754 2221 123345
Q ss_pred chhHHHHHHHHHhhhccCC
Q 042277 607 GVNYRALNDLFNLSQNRRS 625 (899)
Q Consensus 607 GIipRal~~LF~~~~~~~~ 625 (899)
|--.+.+..+|........
T Consensus 257 Gese~~ir~~F~~A~~~~P 275 (437)
T 4b4t_L 257 GESARIIREMFAYAKEHEP 275 (437)
T ss_dssp SHHHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 7778999999997765543
No 113
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.19 E-value=30 Score=31.26 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=10.3
Q ss_pred HHhhHHHHHHhhhhhHHHHHHHHHH
Q 042277 374 RCLHMETEYKGAKSGFEERIKELEH 398 (899)
Q Consensus 374 ~~~~le~~~~~~~~~le~~i~ele~ 398 (899)
+--.|....+.....++.+...|+.
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~ 90 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTE 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 114
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.91 E-value=0.6 Score=44.59 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=23.1
Q ss_pred hHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 566 TQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 566 v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
+..++..+..+....|+-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 3445555555666778999999999998873
No 115
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=79.84 E-value=0.49 Score=51.74 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=22.9
Q ss_pred hHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 566 TQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 566 v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
+...+..++ .|...+|+-||++|+|||.++
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 334444444 678889999999999999876
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=79.83 E-value=0.55 Score=50.41 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=29.5
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcC-CCeeEeeccccCCcccceee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDG-YNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdG-yN~cIfAYGQTGSGKTyTM~ 596 (899)
.|+||.++.. ..+...+..+..++.. .| ....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~~~~~~~~--~~~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEVVKEALEN--LGSLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHHHHHHHHT--TTTSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHHHHHHHhC--cCCCCCeEEEECCCCCcHHHHHH
Confidence 4788887632 2334444444333332 12 33568899999999999874
No 117
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=79.71 E-value=37 Score=31.14 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~l 410 (899)
..+..|..+.+....++..++..+..++..|+..+..... ....+.+++.-..++.......+..++.+
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~-~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l 73 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP-DEKTKEELEELMSDIKKTANKVRSKLKSI 73 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999887654321 22344445555555555555555555544
No 118
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.36 E-value=0.56 Score=50.40 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=29.3
Q ss_pred eeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 545 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|.||.+++.+ .+.. .+...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~---~l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKL---ALLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHH---HHHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHH---HHHHHhhCCCCceEEEECCCCccHHHHH
Confidence 458899887643 2322 2333444444556999999999999876
No 119
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.36 E-value=0.65 Score=48.18 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=32.3
Q ss_pred eEEeceeeCCCCChhhHHhchHHHH-HHHH----cCCCeeEeeccccCCccccee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLI-RSVL----DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV-~svL----dGyN~cIfAYGQTGSGKTyTM 595 (899)
.+.||.+.+.+.....+...+..+- ...+ ......|+-||++|+|||+..
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4678888887776666655433211 0111 123445899999999999886
No 120
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.23 E-value=0.66 Score=48.47 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=20.8
Q ss_pred HHHHHH---cCCCeeEeeccccCCccccee
Q 042277 569 LIRSVL---DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 569 LV~svL---dGyN~cIfAYGQTGSGKTyTM 595 (899)
++..+- ......|+-||++|+|||+..
T Consensus 52 l~~~l~~~~~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 52 LVQQTKNSDRTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp HHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred HHHHHhccCCCCCeEEEEECCCCCcHHHHH
Confidence 444443 566778999999999999876
No 121
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=78.03 E-value=0.66 Score=44.37 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 445555555667788999999999998763
No 122
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.81 E-value=37 Score=38.43 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 042277 435 QHGALRELRFSSDSIKQEISKAQK 458 (899)
Q Consensus 435 ~~~~l~~l~~~~~~~k~~~~~~q~ 458 (899)
.+..++.|+.+.+.++.++.+...
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 440 YQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhh
Confidence 334445555555555555544433
No 123
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=77.81 E-value=22 Score=41.95 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q 042277 360 LKQELEMAKKTYELRCLHMET 380 (899)
Q Consensus 360 LkqeL~~~k~~~e~~~~~le~ 380 (899)
+.+.++.-+++|++++.+|+.
T Consensus 513 ~~~~~~~~~~~~~e~~~ql~~ 533 (592)
T 1f5n_A 513 NEQMMEQKERSYQEHLKQLTE 533 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444
No 124
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.72 E-value=24 Score=40.51 Aligned_cols=27 Identities=15% Similarity=-0.097 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042277 347 MKEKDQQMLENLALKQELEMAKKTYEL 373 (899)
Q Consensus 347 ~~eke~~~~e~~~LkqeL~~~k~~~e~ 373 (899)
.+...+....|..||++|+...+.+..
T Consensus 56 dkqErDltkrINELKnqLEdlsKnsKd 82 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEYQKNNKD 82 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HhhcCcHHHHHHHHHHHHHHHHhhchh
Confidence 344445666777788888777665544
No 125
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=77.68 E-value=40 Score=37.34 Aligned_cols=17 Identities=18% Similarity=-0.019 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042277 355 LENLALKQELEMAKKTY 371 (899)
Q Consensus 355 ~e~~~LkqeL~~~k~~~ 371 (899)
..|..|++.|...++.|
T Consensus 67 ~rIe~L~~~L~~~s~s~ 83 (390)
T 1deq_A 67 SRINKLRDSLFNYQKNS 83 (390)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444555554444443
No 126
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.97 E-value=12 Score=35.37 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=16.8
Q ss_pred HHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHH
Q 042277 370 TYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKV 407 (899)
Q Consensus 370 ~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~ 407 (899)
..|..+.+++..+......++.++.+++..+...+.+.
T Consensus 63 sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 63 SLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEM 100 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455555444444433
No 127
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.74 E-value=16 Score=34.31 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=16.3
Q ss_pred HHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHH
Q 042277 371 YELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKV 407 (899)
Q Consensus 371 ~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~ 407 (899)
.|..+.+++..+......++.++..++..+...+.+.
T Consensus 62 LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 62 LQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3334444444444444444444555555444444433
No 128
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.75 E-value=0.99 Score=48.93 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=34.0
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcCCCe--eEeeccccCCcccceee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNV--CIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~--cIfAYGQTGSGKTyTM~ 596 (899)
.+.||.+.+ |+.+...+..++..+-.|... .++-||++|+|||+...
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 356777765 455555556667777777764 88999999999998763
No 129
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.65 E-value=1.1 Score=44.85 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccce
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyT 594 (899)
..+..+++|.| ++..++||||||.+
T Consensus 43 ~~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 43 RAIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 45677888877 67889999999987
No 130
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=74.09 E-value=0.57 Score=45.08 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=14.9
Q ss_pred eeEeeccccCCcccceee
Q 042277 579 VCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM~ 596 (899)
-.++-||++||||||.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 356679999999999874
No 131
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.02 E-value=0.7 Score=47.67 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=28.9
Q ss_pred eEEeceeeCCCCChhhHHhchHHHH-HHHHcCC----CeeEeeccccCCcccceee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLI-RSVLDGY----NVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV-~svLdGy----N~cIfAYGQTGSGKTyTM~ 596 (899)
.++||.|.+.+....++-+-+..+- ..++++. ...|+-||++|||||+.+-
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 4788888876543333322211110 1223322 2238999999999998873
No 132
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=73.12 E-value=1.5 Score=43.29 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.| ++..++||||||.+.
T Consensus 32 ~~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 32 ESIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHHccCCC--EEEECCCCCchHHHH
Confidence 45667788877 567889999999754
No 133
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=72.93 E-value=1.3 Score=43.58 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.| ++..++||||||.+.
T Consensus 30 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 30 AALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCC--EEEECCCCChHHHHH
Confidence 45667788877 566789999999873
No 134
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.66 E-value=1.1 Score=50.87 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=28.9
Q ss_pred eeEEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 545 RMFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 545 k~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..|+||...... ++...+..+..++.. .|..-.++-||++|+||||.+.
T Consensus 100 ~~~tfd~fv~g~-~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVVGP-GNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCCCT-TTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCCCC-chHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 357888765322 233344333333332 2313468899999999999884
No 135
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=72.38 E-value=64 Score=30.23 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=13.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHH
Q 042277 384 GAKSGFEERIKELEHLLQVSRNKVRE 409 (899)
Q Consensus 384 ~~~~~le~~i~ele~~l~~~~~~~~~ 409 (899)
..+.+|+.++.+++..+++.......
T Consensus 76 ~~k~eLe~~l~el~~rleeeee~~~~ 101 (129)
T 2fxo_A 76 KNKIQLEAKVKEMNKRLEDEEEMNAE 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555544444433
No 136
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=72.08 E-value=1.1 Score=45.93 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..++.|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677888977 577999999999774
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=71.81 E-value=0.68 Score=50.04 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=24.8
Q ss_pred hhhHHhchHHHHHHHH-cCCCeeEeeccccCCcccceee
Q 042277 559 QAEVFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 559 QeeVF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM~ 596 (899)
+++....+...+..++ .+...+++-||++|+|||+++.
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 4444444444444444 3455689999999999998773
No 138
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.49 E-value=1.8 Score=44.28 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.6
Q ss_pred CCCeeEeeccccCCccccee
Q 042277 576 GYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM 595 (899)
.....|+-||++|+|||+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34557899999999999876
No 139
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=71.47 E-value=1.7 Score=45.83 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.4
Q ss_pred CCCeeEeeccccCCccccee
Q 042277 576 GYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM 595 (899)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34446899999999999876
No 140
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=70.41 E-value=1.3 Score=47.22 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=14.4
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
..|+-||++|+|||+..
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778999999999876
No 141
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=70.37 E-value=1.6 Score=44.49 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=21.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.| +++.++||||||.+.
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677888987 578899999999873
No 142
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=70.30 E-value=0.97 Score=48.25 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=29.8
Q ss_pred EEeceeeCCCCChhhHHhch-HHHHH-HHHc----CCCeeEeeccccCCccccee
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLIR-SVLD----GYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV~-svLd----GyN~cIfAYGQTGSGKTyTM 595 (899)
++||.|.+.+..-..+.+.+ .|+.. ..+. .....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 56788777554444444443 23221 1221 23456899999999999876
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=69.81 E-value=1.4 Score=47.74 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=27.1
Q ss_pred ChhhHHhchHHHHHHHHcCCC-e--eEeeccccCCccccee
Q 042277 558 TQAEVFSDTQPLIRSVLDGYN-V--CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 558 tQeeVF~~v~pLV~svLdGyN-~--cIfAYGQTGSGKTyTM 595 (899)
.+++....+...+..++.|.. . +++-||++|+|||+++
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 345555556666666666543 4 6889999999999876
No 144
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.90 E-value=2.4 Score=48.10 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=33.7
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHcCCC--eeEeeccccCCccccee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLDGYN--VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN--~cIfAYGQTGSGKTyTM 595 (899)
.+.||.|.+ |+++...+..+++.+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 356777764 56676666677777777764 36788999999999765
No 145
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=67.86 E-value=2 Score=43.57 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.| ++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 54 QTIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 45667788877 456789999999864
No 146
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=67.60 E-value=2 Score=43.33 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.|+ +..++||||||.+.
T Consensus 49 ~~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 49 QAWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456778889875 67789999999764
No 147
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=66.85 E-value=1.7 Score=45.41 Aligned_cols=26 Identities=42% Similarity=0.701 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
.++..++.|.| +++.++||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 46677788877 578899999999763
No 148
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=66.75 E-value=1.2 Score=46.66 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=28.6
Q ss_pred eEEeceeeCCCCChhhHHhchHHHH-HHHHcCC----CeeEeeccccCCcccceee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLI-RSVLDGY----NVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV-~svLdGy----N~cIfAYGQTGSGKTyTM~ 596 (899)
.++||.|.+.+....++-+-+..+- ..++++. ...|+-||++|||||+.+-
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 4778888766543333322221110 1223322 2238999999999998873
No 149
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=66.57 E-value=1.7 Score=45.30 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=30.7
Q ss_pred eEEeceeeCCCCChhhHHhch-HHHHH-HHH----cCCCeeEeeccccCCccccee
Q 042277 546 MFKFNKVFGPDATQAEVFSDT-QPLIR-SVL----DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v-~pLV~-svL----dGyN~cIfAYGQTGSGKTyTM 595 (899)
.+.||.+.+.+..-+.+...+ .|+-. ..+ -.....|+-||++|+|||+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 477888887655444444433 22211 111 134556899999999999876
No 150
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=66.53 E-value=2.1 Score=48.39 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=23.3
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
+.+..++..-...|.-.|+||||||+||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 45666666666788999999999999984
No 151
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=66.52 E-value=1.2 Score=43.87 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=19.6
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceee
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
.+..+++|.+ ++..++||||||.+..
T Consensus 41 ~i~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 41 VAQPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 4556677766 5668999999998764
No 152
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.49 E-value=1.6 Score=47.18 Aligned_cols=41 Identities=34% Similarity=0.572 Sum_probs=25.0
Q ss_pred eceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 549 FNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 549 FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
|+.+++ |+.+...+.. .+-.|--..++-||+.|+|||+++.
T Consensus 24 ~~~~~g----~~~~~~~L~~---~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 24 LDEVYG----QNEVITTVRK---FVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp GGGCCS----CHHHHHHHHH---HHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HHHhcC----cHHHHHHHHH---HHhcCCCceEEEECCCCCCHHHHHH
Confidence 555554 4444443333 3334533337789999999999874
No 153
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=66.16 E-value=2.2 Score=42.56 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..+..+++|.| ++..++||||||.+..
T Consensus 43 ~~i~~~~~~~~--~li~~~TGsGKT~~~~ 69 (220)
T 1t6n_A 43 ECIPQAILGMD--VLCQAKSGMGKTAVFV 69 (220)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCchhhhhh
Confidence 45677788877 5667799999998653
No 154
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=65.95 E-value=2.4 Score=43.71 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=28.7
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHHHc---------CCCeeEeeccccCCccccee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSVLD---------GYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~svLd---------GyN~cIfAYGQTGSGKTyTM 595 (899)
.+.||.|.+.+. +-+.+..++..+.. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDE----AKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHH----HHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHH----HHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 356888776543 43444334433221 23446899999999999876
No 155
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.71 E-value=1e+02 Score=30.02 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=12.5
Q ss_pred HHHhhHHHHHHhhhhhHHHHHHHHHHHH
Q 042277 373 LRCLHMETEYKGAKSGFEERIKELEHLL 400 (899)
Q Consensus 373 ~~~~~le~~~~~~~~~le~~i~ele~~l 400 (899)
.+--.|...++.....++.+...|+..+
T Consensus 97 eEAN~MVa~ar~~~~~~e~r~~~L~~ql 124 (154)
T 2ocy_A 97 DEANNMVADARKEKYAIEILNKRLTEQL 124 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 156
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=65.27 E-value=2.4 Score=43.53 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.|+ +..++||||||.+.
T Consensus 52 ~~i~~i~~~~~~--l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 52 NAIPAILEHRDI--MACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456778889874 56689999999764
No 157
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=64.96 E-value=1.2e+02 Score=34.64 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=7.5
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 042277 437 GALRELRFSSDSIKQEIS 454 (899)
Q Consensus 437 ~~l~~l~~~~~~~k~~~~ 454 (899)
.+|+.|+..+..++..|.
T Consensus 168 ~~i~~L~~~~~~l~~ki~ 185 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQ 185 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444433333333
No 158
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=64.93 E-value=2.3 Score=41.48 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=16.5
Q ss_pred cCCCeeEeeccccCCccccee
Q 042277 575 DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 575 dGyN~cIfAYGQTGSGKTyTM 595 (899)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344345999999999999876
No 159
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.73 E-value=1.8e+02 Score=32.57 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=5.5
Q ss_pred HHHHHHhHHHHH
Q 042277 474 LAGAAENYHAVL 485 (899)
Q Consensus 474 l~~~~~~y~~~~ 485 (899)
+.+|-+.|+.+.
T Consensus 465 ~~~~~~~~~~~~ 476 (487)
T 3oja_A 465 LASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHhcccHHHHHH
Confidence 344445554443
No 160
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=64.69 E-value=2.7 Score=39.52 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=22.3
Q ss_pred HHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 562 VFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 562 VF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
....+...+..+.. .+..|+-||++|+|||+....
T Consensus 12 ~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 12 AIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp HHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHGG
T ss_pred HHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHHH
Confidence 33444444444443 344577899999999987644
No 161
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=64.24 E-value=2.1 Score=47.27 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=21.4
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceee
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
.+.+++.--...|.-.|+||||||+||.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4555555555688899999999999984
No 162
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=63.89 E-value=2.5 Score=45.72 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=27.2
Q ss_pred ChhhHHhchHHHHHHHHcCC-CeeEeeccccCCccccee
Q 042277 558 TQAEVFSDTQPLIRSVLDGY-NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 558 tQeeVF~~v~pLV~svLdGy-N~cIfAYGQTGSGKTyTM 595 (899)
.+++..+.+...+..++.|- ..+|+-||++|+|||+++
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34555555656666666553 457999999999999876
No 163
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.60 E-value=12 Score=42.54 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=47.7
Q ss_pred EEeceeeCCCCChhhHHhch-HHHHH-HHHc--C--CCeeEeeccccCCccccee--------------ecCCCCCCCcc
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTM--------------SGPSGPHEEDW 606 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV~-svLd--G--yN~cIfAYGQTGSGKTyTM--------------~G~~~~~~~~~ 606 (899)
-+||.|-+-+.--+++.+.+ .|+-. ..+. | .--.|+-||+.|+|||.+. .|+. -.....
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~-l~sk~v 257 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE-LIQKYL 257 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG-GCCSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH-hhhccC
Confidence 45666666554444444443 34431 2333 3 2356999999999999643 3321 123456
Q ss_pred chhHHHHHHHHHhhhccCC
Q 042277 607 GVNYRALNDLFNLSQNRRS 625 (899)
Q Consensus 607 GIipRal~~LF~~~~~~~~ 625 (899)
|--.+.++.+|........
T Consensus 258 Gesek~ir~lF~~Ar~~aP 276 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENAP 276 (437)
T ss_dssp SHHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHhcCC
Confidence 8888999999998765543
No 164
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=63.51 E-value=2.4 Score=45.25 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..++.|-.-.+++.++||||||.+.
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 4567778884455788999999999764
No 165
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=63.28 E-value=49 Score=28.81 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=7.0
Q ss_pred hhHHHHHHhhhhhHHHHHH
Q 042277 376 LHMETEYKGAKSGFEERIK 394 (899)
Q Consensus 376 ~~le~~~~~~~~~le~~i~ 394 (899)
..++.++.+.+.+++.+..
T Consensus 36 ~~lE~eL~~~r~e~~~q~~ 54 (84)
T 1gk4_A 36 GRLQDEIQNMKEEMARHLR 54 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 166
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=63.13 E-value=34 Score=32.03 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHH
Q 042277 351 DQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEE 391 (899)
Q Consensus 351 e~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~ 391 (899)
+++..++..|+.+|+.++..+...+.+|..++.....+|++
T Consensus 18 e~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 18 ERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777666655555444544444433333333
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=62.96 E-value=3.3 Score=44.32 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=29.7
Q ss_pred EeceeeCCCCChhhHHhchHHHHHHHH--cCCCeeEeeccccCCccccee
Q 042277 548 KFNKVFGPDATQAEVFSDTQPLIRSVL--DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 548 ~FD~VF~~~atQeeVF~~v~pLV~svL--dGyN~cIfAYGQTGSGKTyTM 595 (899)
.|+.+.+ ++.+...+..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 3555543 4555555656666554 344567899999999999866
No 168
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.72 E-value=3.1 Score=45.36 Aligned_cols=26 Identities=38% Similarity=0.664 Sum_probs=21.7
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 56778889988 577999999999874
No 169
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=62.71 E-value=2.7 Score=42.92 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.|+ ++.++||||||.+.
T Consensus 58 ~~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 58 QGWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 445667788875 55679999999874
No 170
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=62.55 E-value=2.9 Score=42.36 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.|+ +..++||||||.+.
T Consensus 53 ~~i~~~~~~~~~--l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 53 KAIPLGRCGLDL--IVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCCcHHHHH
Confidence 456677888874 56789999999873
No 171
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=62.34 E-value=1.3 Score=48.68 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=16.9
Q ss_pred CCCeeEeeccccCCccccee
Q 042277 576 GYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM 595 (899)
+....|+-||++|+|||+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44667999999999999876
No 172
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.99 E-value=74 Score=35.73 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=17.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhHHH
Q 042277 382 YKGAKSGFEERIKELEHLLQVSRNKVR 408 (899)
Q Consensus 382 ~~~~~~~le~~i~ele~~l~~~~~~~~ 408 (899)
.++....|++++.+++..+.+.+.|..
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 344555677777777777666666653
No 173
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=61.85 E-value=26 Score=27.76 Aligned_cols=40 Identities=33% Similarity=0.391 Sum_probs=29.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 042277 344 AKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKS 387 (899)
Q Consensus 344 ~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~ 387 (899)
.+|..+.|.+..|++.|++||+ ....|+..||++.-+.+.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~----dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELE----DNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH----hhHHHHHHHHhhhhhHHH
Confidence 4677788888899999999996 344567777776655544
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=61.83 E-value=2.8 Score=47.73 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=27.5
Q ss_pred ChhhHHhchHHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 558 TQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 558 tQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
.|+.+.....++...+-.|.-..++-||++|+|||+..
T Consensus 30 Gq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 30 GQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 46666654455555555566678999999999999876
No 175
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=61.50 E-value=3 Score=43.02 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.|+ +..++||||||.+.
T Consensus 72 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 72 EAIPLALQGRDI--IGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEEcCCCCCchhHh
Confidence 456777888774 55679999999864
No 176
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=61.45 E-value=1.6 Score=45.98 Aligned_cols=50 Identities=20% Similarity=0.421 Sum_probs=29.3
Q ss_pred eEEeceeeCCCCChhhHHhch-HHHHH-HHHcC---CCeeEeeccccCCccccee
Q 042277 546 MFKFNKVFGPDATQAEVFSDT-QPLIR-SVLDG---YNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v-~pLV~-svLdG---yN~cIfAYGQTGSGKTyTM 595 (899)
...||.+.+.+..-..+.+.+ .|+.. ..+.| ....|+-||++|+|||+..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 356888877543333333332 23221 12222 3567899999999999865
No 177
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=61.32 E-value=2.7 Score=42.83 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..++..+..|.+ ++..|+||||||..+
T Consensus 67 ~~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 67 SEILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 355666777754 567899999999755
No 178
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.59 E-value=2.2 Score=42.78 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.|+ +..++||||||.+.
T Consensus 33 ~~i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 33 RIIPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456677788775 56789999999873
No 179
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.52 E-value=1.3e+02 Score=29.36 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 042277 343 VAKLMKEKDQQMLENLALKQELEMA 367 (899)
Q Consensus 343 ~~~l~~eke~~~~e~~~LkqeL~~~ 367 (899)
+.++..++.+...++..|..+|...
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E 70 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKE 70 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4444455555666666666666443
No 180
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=59.94 E-value=1.3 Score=46.99 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=26.9
Q ss_pred EEeceeeCCCCChhhHHhch-HHHH-HHHHcCCCe----eEeeccccCCccccee
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLI-RSVLDGYNV----CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV-~svLdGyN~----cIfAYGQTGSGKTyTM 595 (899)
.+||.|-+.+.-.+++.+.+ .|+- ..++++++. .|+-||+.|||||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 56777766555555555442 4443 234443332 2889999999999775
No 181
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=59.11 E-value=4.3 Score=38.18 Aligned_cols=20 Identities=20% Similarity=0.600 Sum_probs=16.2
Q ss_pred CCCeeEeeccccCCccccee
Q 042277 576 GYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM 595 (899)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566889999999998765
No 182
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=58.89 E-value=4.4 Score=42.80 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=28.1
Q ss_pred EeceeeCCCCChhhHHhchHHHHHHHH--cCCCeeEeeccccCCccccee
Q 042277 548 KFNKVFGPDATQAEVFSDTQPLIRSVL--DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 548 ~FD~VF~~~atQeeVF~~v~pLV~svL--dGyN~cIfAYGQTGSGKTyTM 595 (899)
.|+.+.+ ++.+...+..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIG----QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCS----CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhC----HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 4555554 3444444555555443 245567888999999999776
No 183
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=58.29 E-value=3.6 Score=40.42 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.3
Q ss_pred eeEeeccccCCcccceee
Q 042277 579 VCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM~ 596 (899)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998763
No 184
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=58.10 E-value=3.7 Score=44.79 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=22.7
Q ss_pred chHHHH-HHHHcC---CCeeEee--ccccCCccccee
Q 042277 565 DTQPLI-RSVLDG---YNVCIFA--YGQTGSGKTYTM 595 (899)
Q Consensus 565 ~v~pLV-~svLdG---yN~cIfA--YGQTGSGKTyTM 595 (899)
.+...+ ..+..| -..+++- ||+.|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 33 ALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 344455 666666 4567888 999999999876
No 185
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.09 E-value=3 Score=47.85 Aligned_cols=78 Identities=21% Similarity=0.355 Sum_probs=49.3
Q ss_pred EEeceeeCCCCChhhHHhch-HHHH-HHHHcCC----CeeEeeccccCCccccee--------------ecCCCCCCCcc
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLI-RSVLDGY----NVCIFAYGQTGSGKTYTM--------------SGPSGPHEEDW 606 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV-~svLdGy----N~cIfAYGQTGSGKTyTM--------------~G~~~~~~~~~ 606 (899)
.+||-|-+-+.--+++.+.+ -|+. ...+.++ --.|+-||+.|+|||++. .|+. -...-.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~-L~sk~v 284 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE-LVQKYV 284 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG-GCCCSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH-hhcccC
Confidence 56777776655555555544 4554 2344432 456999999999999653 2221 122345
Q ss_pred chhHHHHHHHHHhhhccCC
Q 042277 607 GVNYRALNDLFNLSQNRRS 625 (899)
Q Consensus 607 GIipRal~~LF~~~~~~~~ 625 (899)
|--.+.++.+|........
T Consensus 285 Gesek~ir~lF~~Ar~~aP 303 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKKA 303 (467)
T ss_dssp SHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHhcCC
Confidence 7788999999997765543
No 186
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=58.02 E-value=4.4 Score=42.58 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=25.3
Q ss_pred ChhhHHhchHHHHHHHHcCC------CeeEeeccccCCccccee
Q 042277 558 TQAEVFSDTQPLIRSVLDGY------NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 558 tQeeVF~~v~pLV~svLdGy------N~cIfAYGQTGSGKTyTM 595 (899)
.|..+...+...|.....|. ...++-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 35555555555555544332 357899999999999876
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=58.01 E-value=3.3 Score=45.75 Aligned_cols=50 Identities=22% Similarity=0.413 Sum_probs=28.1
Q ss_pred eEEeceeeCCCCChhhHHhch-HHHHH-HHHc---CCCeeEeeccccCCccccee
Q 042277 546 MFKFNKVFGPDATQAEVFSDT-QPLIR-SVLD---GYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v-~pLV~-svLd---GyN~cIfAYGQTGSGKTyTM 595 (899)
.+.||.|.+.+.--..+...+ .|+.. .++. .-..+|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 356888877443322232222 22221 1112 22457999999999999876
No 188
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=57.53 E-value=6.8 Score=41.62 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=27.0
Q ss_pred ChhhHHhchHHHHHHHHcCC-----CeeEeeccccCCccccee
Q 042277 558 TQAEVFSDTQPLIRSVLDGY-----NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 558 tQeeVF~~v~pLV~svLdGy-----N~cIfAYGQTGSGKTyTM 595 (899)
|-+++..-+..++..++.|+ ...|+..|++|||||+..
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 33555555567777777664 356889999999998754
No 189
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=57.44 E-value=3.8 Score=44.36 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=26.2
Q ss_pred EeceeeCCCCChhhHHhchHHHHHHHH-cC-CCeeEeeccccCCccccee
Q 042277 548 KFNKVFGPDATQAEVFSDTQPLIRSVL-DG-YNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 548 ~FD~VF~~~atQeeVF~~v~pLV~svL-dG-yN~cIfAYGQTGSGKTyTM 595 (899)
.|+.+|+ |..+...+.-.|.... .| .--.++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 4666665 3455555444444321 12 2234667999999999876
No 190
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.28 E-value=34 Score=32.69 Aligned_cols=40 Identities=18% Similarity=0.083 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHH
Q 042277 361 KQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLL 400 (899)
Q Consensus 361 kqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l 400 (899)
.++|+.+-...=.+.-.|...++.....++.+...|+..+
T Consensus 73 e~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 112 (135)
T 2e7s_A 73 NKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQL 112 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444555555555555555555444433
No 191
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=56.73 E-value=4.1 Score=44.25 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=22.3
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 4677788885566788899999999873
No 192
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=56.58 E-value=3.7 Score=44.85 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.| ++..++||||||.+.
T Consensus 66 ~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 66 RAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 45677888988 567789999999764
No 193
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=56.57 E-value=1.2e+02 Score=27.91 Aligned_cols=7 Identities=0% Similarity=0.283 Sum_probs=2.6
Q ss_pred HhHHHHH
Q 042277 479 ENYHAVL 485 (899)
Q Consensus 479 ~~y~~~~ 485 (899)
..|..++
T Consensus 84 ~k~n~ai 90 (111)
T 2v66_B 84 QRLNQAI 90 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 194
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=56.56 E-value=4.5 Score=42.48 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=22.7
Q ss_pred hhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 559 QAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 559 QeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
|+++...+..++. .|....++-||++|+|||++..
T Consensus 30 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 30 QEHIVKRLKHYVK---TGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CHHHHHHHHHHHH---HTCCCEEEEESCTTSSHHHHHH
T ss_pred CHHHHHHHHHHHH---cCCCCeEEEECcCCCCHHHHHH
Confidence 4555444433333 3544448899999999998763
No 195
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=56.56 E-value=2 Score=46.44 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=28.6
Q ss_pred EEeceeeCCCCChhhHHhch-HHHH-HHHHcCC---CeeEeeccccCCccccee
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLI-RSVLDGY---NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV-~svLdGy---N~cIfAYGQTGSGKTyTM 595 (899)
.+||.|.+.+..-+.+.+.+ .|+- ..++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 45777776544333333332 2332 1333442 246889999999999876
No 196
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.56 E-value=1.2e+02 Score=27.94 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=17.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 440 RELRFSSDSIKQEISKAQKSHADDLYCLGVRLKAL 474 (899)
Q Consensus 440 ~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l 474 (899)
+.|........+.+..+|+.|....+.+...|..|
T Consensus 48 ~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 48 SALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443333444445555555555555555555555
No 197
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.43 E-value=1.8 Score=46.48 Aligned_cols=20 Identities=45% Similarity=0.625 Sum_probs=16.6
Q ss_pred CCCeeEeeccccCCccccee
Q 042277 576 GYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 576 GyN~cIfAYGQTGSGKTyTM 595 (899)
+...+++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34567899999999999876
No 198
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.21 E-value=1.2e+02 Score=27.46 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhh
Q 042277 446 SDSIKQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAENRRLFNEVQD 497 (899)
Q Consensus 446 ~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N~iqe 497 (899)
...+.+++..+....-++-+.+ .+++....+.+...+++|..+|.|
T Consensus 49 ~~~ie~ElEeLTasLFeEAN~M------Va~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 49 ADKLNKEVEDLTASLFDEANNM------VADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555444444443333 233333344555567788888876
No 199
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=56.06 E-value=3.9 Score=46.08 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccce
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyT 594 (899)
..+..++.|.+-.+++.|+||||||.+
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 456677788667789999999999977
No 200
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.05 E-value=1.5e+02 Score=28.83 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 435 QHGALRELRFSSDSIKQEISKAQKSHADDLYCLGVRLKALAG 476 (899)
Q Consensus 435 ~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~~ 476 (899)
...++..|...+..+..++...+..|..-...|...+..|..
T Consensus 96 AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 96 AERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555665555555555555544
No 201
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=55.94 E-value=4.2 Score=43.23 Aligned_cols=19 Identities=26% Similarity=0.280 Sum_probs=15.7
Q ss_pred CeeEeeccccCCcccceee
Q 042277 578 NVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~ 596 (899)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 4567889999999998874
No 202
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=55.52 E-value=1.6e+02 Score=28.97 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=5.1
Q ss_pred hhhhhhhhcC
Q 042277 490 RLFNEVQDLK 499 (899)
Q Consensus 490 ~l~N~iqelk 499 (899)
++-..|++||
T Consensus 174 kl~~~leeLk 183 (185)
T 3r2p_A 174 RLAARLEALK 183 (185)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhh
Confidence 3444455555
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=55.28 E-value=3.2 Score=42.74 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=21.4
Q ss_pred HHHHHHcCC--CeeEeeccccCCcccceeec
Q 042277 569 LIRSVLDGY--NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 569 LV~svLdGy--N~cIfAYGQTGSGKTyTM~G 597 (899)
.+..++.|. .-||+-||+.|+|||+....
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 345566663 35799999999999987643
No 204
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=55.04 E-value=12 Score=36.92 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCChHHHHHhchhhHHHHHHhhhhcCCcc-----ccccccC-CCcchhhhhHHHHHHHHhhc
Q 042277 30 ALLIEWLNSILPNLNFPIKASDEELRACLIDGTVLCQILKRLKPASV-----DEANYSY-NSSMSRSGKIARFLTTLGKL 103 (899)
Q Consensus 30 ~e~~~Wi~~~~g~~~~~~~~~~e~f~~~LkdG~iLC~l~N~l~PGsv-----~ki~~~~-~~~~~~~ENI~~FL~a~~~~ 103 (899)
.-++.||... +.. .| ..+- .-|.||++|..+++.|-|-.- ++|+..+ .++.-.+.|+...++++..|
T Consensus 12 ~aLl~W~~tf-~~~-~~-~~~~----~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~Y 84 (164)
T 1wix_A 12 DSLIIWLQTF-KTA-SP-CQDV----KQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITSY 84 (164)
T ss_dssp HHHHHHHTTC-CCS-SC-CCSH----HHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCC-CC-cCcH----HHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHHH
Confidence 3689999763 321 12 1222 348999999999999999653 4554322 12333456777777766655
No 205
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=54.66 E-value=47 Score=29.18 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=15.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 042277 344 AKLMKEKDQQMLENLALKQELEMAKKTYELR 374 (899)
Q Consensus 344 ~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~ 374 (899)
..+..++.....++..++..++..|.+||.+
T Consensus 10 ~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E 40 (86)
T 3swk_A 10 DQLTNDKARVEVERDNLAEDIMRLREKLQEE 40 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555543
No 206
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=54.31 E-value=4.5 Score=42.20 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=15.5
Q ss_pred CeeEeeccccCCccccee
Q 042277 578 NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM 595 (899)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456888999999999876
No 207
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=54.22 E-value=4.7 Score=43.27 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=21.4
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..++.|-.-.++..++||||||.+.
T Consensus 34 ~~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 34 RALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 4567778884455678899999999864
No 208
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=54.18 E-value=1.4e+02 Score=27.68 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=5.9
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 042277 438 ALRELRFSSDSIKQEISK 455 (899)
Q Consensus 438 ~l~~l~~~~~~~k~~~~~ 455 (899)
+|+.|...-..+..++..
T Consensus 78 qL~~Lt~~Re~V~~eL~r 95 (112)
T 1x79_B 78 QMAVLMQSREQVSEELVR 95 (112)
T ss_dssp HHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444333333333333
No 209
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=53.55 E-value=1.4e+02 Score=27.58 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 042277 462 DDLYCLGVRLKALAGAAENYHAVLAENRRLFN 493 (899)
Q Consensus 462 ~~~~~l~~~l~~l~~~~~~y~~~~~e~R~l~N 493 (899)
..+.+++..+...++.-.-....+.++-.|--
T Consensus 77 ~SLeD~E~k~n~aiErnalLE~El~EKe~L~~ 108 (111)
T 2v66_B 77 VSLEDFEQRLNQAIERNAFLESELDEKESLLV 108 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555555533
No 210
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=53.35 E-value=6.1 Score=42.05 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=24.3
Q ss_pred HHHHHHHHcCC---CeeEeeccccCCcccceee
Q 042277 567 QPLIRSVLDGY---NVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 567 ~pLV~svLdGy---N~cIfAYGQTGSGKTyTM~ 596 (899)
...+...++|. .-||+-||+.|+|||+...
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 45578888887 3489999999999997753
No 211
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=53.22 E-value=2.3e+02 Score=29.96 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=5.6
Q ss_pred HhhhhhhhhhcC
Q 042277 488 NRRLFNEVQDLK 499 (899)
Q Consensus 488 ~R~l~N~iqelk 499 (899)
+|.|-..+.+++
T Consensus 233 ~~~l~~~~e~l~ 244 (273)
T 3s84_A 233 NKALVQQMEQLR 244 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 212
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=53.21 E-value=4.6 Score=42.39 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..+..+++|.+ ++..++||||||.+..
T Consensus 23 ~~i~~i~~~~~--~lv~~~TGsGKT~~~~ 49 (337)
T 2z0m_A 23 KTIPLMLQGKN--VVVRAKTGSGKTAAYA 49 (337)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHHH
T ss_pred HHHHHHhcCCC--EEEEcCCCCcHHHHHH
Confidence 34566778876 4567899999998654
No 213
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=52.98 E-value=68 Score=29.70 Aligned_cols=11 Identities=9% Similarity=0.477 Sum_probs=6.0
Q ss_pred HHHHHHHHHHh
Q 042277 317 IVMNQLQQIKT 327 (899)
Q Consensus 317 ~~~~~l~~~~~ 327 (899)
-+.++|+.++.
T Consensus 36 PL~~ELeRLr~ 46 (115)
T 3vem_A 36 PFLHELEKLRR 46 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45566665553
No 214
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=52.94 E-value=3.8 Score=43.10 Aligned_cols=20 Identities=40% Similarity=0.473 Sum_probs=16.2
Q ss_pred CCeeEeeccccCCcccceee
Q 042277 577 YNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~ 596 (899)
-...+.-.|+||||||+++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34567789999999999883
No 215
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=52.67 E-value=97 Score=27.70 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 042277 431 FMDLQHGALRELRFSSDSIKQEISKAQKSHADDL 464 (899)
Q Consensus 431 ~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~ 464 (899)
.+...+..|..|+..+..+|+++......|.+-+
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 71 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL 71 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455577788888888888888777887543
No 216
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=52.61 E-value=3.4e+02 Score=31.83 Aligned_cols=15 Identities=47% Similarity=0.654 Sum_probs=11.5
Q ss_pred HHhhhhhhhhhcCCC
Q 042277 487 ENRRLFNEVQDLKGN 501 (899)
Q Consensus 487 e~R~l~N~iqelkGn 501 (899)
+-+.|.++|++|+.+
T Consensus 568 ~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 568 ESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 357788999988765
No 217
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=52.13 E-value=4.7 Score=43.76 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..++.|.+ ++..++||||||.+.
T Consensus 50 ~~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 50 EAIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 45677778877 567889999999764
No 218
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=51.56 E-value=5 Score=43.76 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..+++|.|+ +..++||||||.+.
T Consensus 44 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 44 HAIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 456677889875 56889999999754
No 219
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=51.29 E-value=21 Score=31.37 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAK 368 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k 368 (899)
++.....-+-+++..+.+|++||.-+|
T Consensus 57 dvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 57 DVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444555555554443
No 220
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=50.83 E-value=3.6 Score=45.07 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=27.6
Q ss_pred EEeceeeCCCCChhhHHhch-HHHH-HHHHcCC---CeeEeeccccCCccccee
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLI-RSVLDGY---NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV-~svLdGy---N~cIfAYGQTGSGKTyTM 595 (899)
..||.|.+.+..-..+.+.+ .|+- ..++.+. ...|+-||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 56777766444333333332 2322 1223322 245888999999999876
No 221
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=50.80 E-value=1.2e+02 Score=26.42 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 042277 429 QSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDL 464 (899)
Q Consensus 429 ~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~ 464 (899)
...+...+..|..++..+..+|.++...-..|.+-+
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll 62 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555677788888888888888777886654
No 222
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=50.60 E-value=4.7 Score=41.46 Aligned_cols=26 Identities=27% Similarity=0.080 Sum_probs=19.5
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceee
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
.+..++++.+ ++.+|+||+|||++..
T Consensus 101 ai~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 101 ALERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 4556677765 5667899999998864
No 223
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.47 E-value=1.4e+02 Score=26.79 Aligned_cols=8 Identities=0% Similarity=-0.039 Sum_probs=2.9
Q ss_pred HHHHHHhH
Q 042277 399 LLQVSRNK 406 (899)
Q Consensus 399 ~l~~~~~~ 406 (899)
.+..+...
T Consensus 87 evasLnRr 94 (101)
T 3u59_A 87 EVASLNRR 94 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 224
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.46 E-value=3e+02 Score=30.60 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~l 410 (899)
.+.++.++-..-++.+.+|...|+...-..+.++ .++|.+|.+++..|++.+.+++++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 412 GFQDVEAQAATANHTVMALMASLDAEKAQGQKKV-----------EELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555566666777766654443322222 234444555555555555555543
No 225
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=50.19 E-value=6.5 Score=42.25 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=22.4
Q ss_pred hhhHHhchHHHHHHHHcC-CCeeEeeccccCCcccceee
Q 042277 559 QAEVFSDTQPLIRSVLDG-YNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 559 QeeVF~~v~pLV~svLdG-yN~cIfAYGQTGSGKTyTM~ 596 (899)
|+++...+...+. .| ....++-||+.|+|||+++.
T Consensus 21 ~~~~~~~L~~~l~---~~~~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 21 QEHVLTALANGLS---LGRIHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CHHHHHHHHHHHH---HTCCCSEEEEESCTTSSHHHHHH
T ss_pred cHHHHHHHHHHHH---hCCCCeEEEEECCCCCCHHHHHH
Confidence 4444444433332 33 34468899999999998863
No 226
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=49.88 E-value=39 Score=31.85 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=19.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 443 RFSSDSIKQEISKAQKSHADDLYCLGVRLKALA 475 (899)
Q Consensus 443 ~~~~~~~k~~~~~~q~~~~~~~~~l~~~l~~l~ 475 (899)
+.....-|..+..+|-.|.--|.+...+++...
T Consensus 75 r~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~ 107 (130)
T 3cl3_D 75 RQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSV 107 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333455566666677777766666666554
No 227
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.50 E-value=82 Score=27.39 Aligned_cols=16 Identities=25% Similarity=0.574 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 042277 389 FEERIKELEHLLQVSR 404 (899)
Q Consensus 389 le~~i~ele~~l~~~~ 404 (899)
|+++++.++..+++++
T Consensus 25 Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 25 LEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555444443
No 228
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=49.50 E-value=5.6 Score=46.25 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=18.0
Q ss_pred HHHHcCCCeeEeeccccCCcccceee
Q 042277 571 RSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 571 ~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..+..|.+.++++ ++||||||.++.
T Consensus 192 ~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 192 QSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3344476665555 999999999964
No 229
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=49.50 E-value=68 Score=29.22 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=13.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042277 346 LMKEKDQQMLENLALKQELEMAKKTYEL 373 (899)
Q Consensus 346 l~~eke~~~~e~~~LkqeL~~~k~~~e~ 373 (899)
|..+....+..+...+|.|..+.+.+|.
T Consensus 40 LQ~Ei~~~E~QL~iArQKLkdAe~~~E~ 67 (107)
T 2k48_A 40 LQENITAHEQQLVTARQKLKDAEKAVEV 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444444555555555555555443
No 230
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=49.28 E-value=6 Score=43.49 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..+++|.| ++..++||||||.+.
T Consensus 28 ~~i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 28 LWAKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 45666778876 568899999999843
No 231
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.53 E-value=5.4 Score=42.56 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
.+...+..|....++-||++|+|||+++.
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 34444445543448889999999998763
No 232
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=47.51 E-value=35 Score=23.90 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 851 DVRELMEQVASLKDTIAKKDDEIERLQ 877 (899)
Q Consensus 851 ~~~~L~eqv~~Lk~~i~~~~~e~e~lq 877 (899)
.+..|+++++.||.+|+.++=||..|+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888887777776654
No 233
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=47.43 E-value=4.4 Score=42.34 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=18.8
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..+..++.|.++. ..++||||||.+..
T Consensus 120 ~ai~~~l~~~~~l--l~~~tGsGKT~~~~ 146 (282)
T 1rif_A 120 DAVFEGLVNRRRI--LNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHHHSEEE--ECCCTTSCHHHHHH
T ss_pred HHHHHHHhcCCeE--EEcCCCCCcHHHHH
Confidence 3455566665543 39999999998764
No 234
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=46.96 E-value=4.2 Score=49.93 Aligned_cols=43 Identities=28% Similarity=0.442 Sum_probs=28.8
Q ss_pred EeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 548 KFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 548 ~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.||.|++.+ ..+..+++.+..+....++-||++|+|||+.+.+
T Consensus 168 ~ld~viGr~-------~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 168 KLDPVIGRD-------EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCCCCSCH-------HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcccCCcH-------HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 456565533 2345555555566666678899999999998754
No 235
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=46.72 E-value=3.1 Score=43.66 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=16.5
Q ss_pred cCCCeeEeeccccCCccccee
Q 042277 575 DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 575 dGyN~cIfAYGQTGSGKTyTM 595 (899)
.|....++-||++|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354444889999999999876
No 236
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=46.61 E-value=1.6e+02 Score=26.28 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=35.9
Q ss_pred chhhHHHHHHHHHHHhhhhhHHHhhhcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042277 312 GEETEIVMNQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLH 377 (899)
Q Consensus 312 ~~~~~~~~~~l~~~~~e~~k~ee~~~~~~~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~ 377 (899)
.++.+.+...|+.++.+... .-+++..+.++.+....++..+..++..+...-+..|.+
T Consensus 3 ~~~~~~l~~eL~~l~~eE~~-------L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~e 61 (96)
T 3q8t_A 3 GSDSEQLQRELKELALEEER-------LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQRE 61 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455555555555432111 235667777888888888888888877666655555444
No 237
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=46.50 E-value=7.2 Score=41.69 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=21.4
Q ss_pred HhchHHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 563 FSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 563 F~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
...+...+..+. ..+..|+-||++|+|||+..
T Consensus 11 ~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 11 MQHLLNEIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHHHHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHHHHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 333334444443 45678889999999999764
No 238
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=46.40 E-value=6.4 Score=45.62 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=17.0
Q ss_pred HcCCCeeEeeccccCCcccceee
Q 042277 574 LDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 574 LdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
-.|.+ |.-.|+||||||+||-
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 36776 5678999999999874
No 239
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=46.18 E-value=7.1 Score=44.71 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=20.5
Q ss_pred HHHHHHcCCCeeEeeccccCCccccee
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
.|..++.|.+-.++..++||||||.+.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 346677774456688999999999873
No 240
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=45.85 E-value=4.1 Score=44.56 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=15.5
Q ss_pred CeeEeeccccCCccccee
Q 042277 578 NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM 595 (899)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999875
No 241
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=45.79 E-value=5.8 Score=43.17 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=15.0
Q ss_pred CeeEeeccccCCccccee
Q 042277 578 NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM 595 (899)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999865
No 242
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.73 E-value=1.7e+02 Score=26.93 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=14.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHH
Q 042277 384 GAKSGFEERIKELEHLLQVSRNKVR 408 (899)
Q Consensus 384 ~~~~~le~~i~ele~~l~~~~~~~~ 408 (899)
.++..+.+++++|+..++.+..++.
T Consensus 83 adREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 83 HAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665555543
No 243
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=45.69 E-value=4.6 Score=44.73 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=18.8
Q ss_pred HHHHHcCCCeeEeeccccCCccccee
Q 042277 570 IRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 570 V~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
+..+.-.....|.-.|+||||||+++
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 33333334556888999999999988
No 244
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=45.69 E-value=8.2 Score=44.32 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccce
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyT 594 (899)
..|..++.|-+-.+++.++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 466777866556678899999999986
No 245
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=45.67 E-value=6.8 Score=46.45 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..|..++..-..+ +-.|+.|||||+|+..
T Consensus 196 ~AV~~al~~~~~~-lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 196 EAVLFALSQKELA-IIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHHHCSSEE-EEECCTTSCHHHHHHH
T ss_pred HHHHHHhcCCCce-EEECCCCCCHHHHHHH
Confidence 4567777544444 4679999999999854
No 246
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=45.44 E-value=6.7 Score=42.05 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=28.0
Q ss_pred EEeceeeCCCCChhhHHhch-HHHHH-HHHcCC---CeeEeeccccCCccccee
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLIR-SVLDGY---NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV~-svLdGy---N~cIfAYGQTGSGKTyTM 595 (899)
..||.|.+.+..-..+.+.+ .|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 45777776443333333332 23221 222222 346899999999999876
No 247
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=45.10 E-value=6.7 Score=42.26 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..++.|.| ++..++||||||.+.
T Consensus 37 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 37 ECIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 45677788877 456789999999865
No 248
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=44.70 E-value=4e+02 Score=30.29 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=9.7
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 042277 352 QQMLENLALKQELEMAKK 369 (899)
Q Consensus 352 ~~~~e~~~LkqeL~~~k~ 369 (899)
.....|..|++.|....+
T Consensus 62 dv~~rI~kLkn~L~~~s~ 79 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQN 79 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 344555666666655443
No 249
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=44.16 E-value=3.1e+02 Score=28.90 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHh
Q 042277 261 VACLLRKVVQEIERRISTQADHLR 284 (899)
Q Consensus 261 ~~~~~~~~~~~~e~~~~~~~~~~~ 284 (899)
+..-|.+.++|+-.+|.--++.++
T Consensus 16 lr~~l~~~~eel~~~L~P~~~~l~ 39 (273)
T 3s84_A 16 LKEEIGKELEELRARLLPHANEVS 39 (273)
T ss_dssp HHHHHHHHHHHHHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHH
Confidence 445556666666666655555544
No 250
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=43.90 E-value=1.5e+02 Score=25.26 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 042277 389 FEERIKELEHLLQVSR 404 (899)
Q Consensus 389 le~~i~ele~~l~~~~ 404 (899)
|+++++.++..+++++
T Consensus 19 Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554444
No 251
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=43.68 E-value=5.9 Score=42.67 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..++.|.++ +..++||||||.+.
T Consensus 50 ~~i~~i~~~~~~--lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 50 RAIMPIIEGHDV--LAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHHTCCE--EECCCSSHHHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456777888774 56789999999873
No 252
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=43.50 E-value=10 Score=44.62 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+|..++.|.+ +++.++||||||.+.
T Consensus 50 ~~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 50 LETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 356778889988 577889999999853
No 253
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=43.42 E-value=8.5 Score=43.63 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..++.|.| ++..++||||||.+.
T Consensus 14 ~~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 14 ELAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 35667788877 466789999999874
No 254
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=43.04 E-value=35 Score=27.54 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCC
Q 042277 854 ELMEQVASLKDTIAKKDDEIERLQLLKDLKNVYP 887 (899)
Q Consensus 854 ~L~eqv~~Lk~~i~~~~~e~e~lq~l~~~~~~~~ 887 (899)
.|..+|+.|+.....++.||+||..+...+++.+
T Consensus 22 ~L~~kv~~Le~~c~e~eQEieRL~~LLkqHgl~~ 55 (58)
T 3a2a_A 22 QLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLLG 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 4556788899999999999999999988877665
No 255
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=42.66 E-value=3.7 Score=46.49 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=14.9
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
..|+-||++|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56889999999999876
No 256
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=42.28 E-value=4.4e+02 Score=30.18 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=3.3
Q ss_pred hhhhHHHHH
Q 042277 385 AKSGFEERI 393 (899)
Q Consensus 385 ~~~~le~~i 393 (899)
+++.+|...
T Consensus 28 aka~Ye~~~ 36 (497)
T 3iox_A 28 AKAAYEAAV 36 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 257
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=42.12 E-value=7.4 Score=44.78 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=29.6
Q ss_pred EEeceeeCCCCChhhHHhch-HHHH-HHHH----cCCCeeEeeccccCCccccee
Q 042277 547 FKFNKVFGPDATQAEVFSDT-QPLI-RSVL----DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v-~pLV-~svL----dGyN~cIfAYGQTGSGKTyTM 595 (899)
..|+.+.+.+..-..+.+.+ .|+- ..++ -.....|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 56777766554444454443 2211 1122 234567999999999999876
No 258
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=41.94 E-value=11 Score=42.22 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..++.|.| +++.++||||||.+.
T Consensus 85 ~ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 85 CSIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCCchHHH
Confidence 45667788877 467889999999863
No 259
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.71 E-value=1.8e+02 Score=25.41 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 042277 389 FEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~~l 410 (899)
|+.||+++=..++-++-++.++
T Consensus 11 LE~KIq~avdtI~lLqmEieEL 32 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEEL 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444444444444444
No 260
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.62 E-value=3.6 Score=44.20 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=13.9
Q ss_pred EeeccccCCccccee
Q 042277 581 IFAYGQTGSGKTYTM 595 (899)
Q Consensus 581 IfAYGQTGSGKTyTM 595 (899)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999987
No 261
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=41.56 E-value=6 Score=42.25 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=17.4
Q ss_pred HHHHcCCCeeEeeccccCCcccceee
Q 042277 571 RSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 571 ~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..+..|. .|+-||++|+|||+.+.
T Consensus 41 ~~l~~~~--~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGG--HILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTC--CEEEESCCCHHHHHHHH
T ss_pred HHHHcCC--eEEEECCCCCcHHHHHH
Confidence 3344453 56779999999998763
No 262
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=41.34 E-value=10 Score=45.82 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=26.3
Q ss_pred ChhhHHhchHHHHHHHHcCCC------eeEeeccccCCccccee
Q 042277 558 TQAEVFSDTQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 558 tQeeVF~~v~pLV~svLdGyN------~cIfAYGQTGSGKTyTM 595 (899)
.|+++...+...|..+..|.. +.|+-||++|+|||++.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 455555555555665555554 26899999999999865
No 263
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=41.22 E-value=8.3 Score=40.84 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..+..++.|.. .++..++||||||.+.
T Consensus 35 ~~i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 35 KVIPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHHHhCCCC-CEEEECCCCChHHHHH
Confidence 34566677743 3467899999999874
No 264
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=41.16 E-value=8.4 Score=38.64 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=21.9
Q ss_pred HHHHHHHcC-C--CeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDG-Y--NVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdG-y--N~cIfAYGQTGSGKTyTM~ 596 (899)
|-++.++.| . ...+.-+|++|||||+.+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 567778854 3 4567789999999998763
No 265
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=41.07 E-value=9.7 Score=42.98 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..++.|.|+ +..++||||||.+.
T Consensus 11 ~~i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 11 ELALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEEeCCCChHHHHH
Confidence 345667788774 56799999999874
No 266
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=41.06 E-value=2.6e+02 Score=27.22 Aligned_cols=71 Identities=7% Similarity=0.077 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMET-EYKGAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~-~~~~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
+...|..+.+.....+..++..+..+++.|...+..... .....+.+++.-..+........+..++.++.
T Consensus 3 ~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~ 74 (196)
T 1fio_A 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQR 74 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677778888888888888888888888776653221 11234445555555555666666666666654
No 267
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=40.49 E-value=7.1 Score=44.05 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=19.1
Q ss_pred HHHHHcCCCeeEeeccccCCcccce
Q 042277 570 IRSVLDGYNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 570 V~svLdGyN~cIfAYGQTGSGKTyT 594 (899)
|..++.|.+. +++.|+||||||.+
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4567888775 45789999999986
No 268
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=40.21 E-value=8.9 Score=45.27 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=19.5
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceee
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
.|..++.| ..++..|++|||||+|+.
T Consensus 157 Ai~~~l~~--~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 157 AAAVALTR--RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp HHHHHHTB--SEEEEECCTTSTHHHHHH
T ss_pred HHHHHhcC--CCEEEEeCCCCCHHHHHH
Confidence 44555654 567889999999999874
No 269
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=40.06 E-value=1.8e+02 Score=24.88 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=14.5
Q ss_pred HHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHH
Q 042277 372 ELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKV 407 (899)
Q Consensus 372 e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~ 407 (899)
|.++..+++.+.+.+.+-.....+++..++.+-.++
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI 55 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKI 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333444444444444433333344444443333333
No 270
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=40.04 E-value=10 Score=38.42 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=18.4
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
++++.+-.|--++| .|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~~~l--iG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTIVFG--LGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSEEEE--ECCTTSSTTHHH
T ss_pred HHHHhccCCCEEEE--ECCCCCCHHHHH
Confidence 34555556655544 899999999876
No 271
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.04 E-value=2.8e+02 Score=31.59 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=3.2
Q ss_pred HHHHHhh
Q 042277 614 NDLFNLS 620 (899)
Q Consensus 614 ~~LF~~~ 620 (899)
+.|+.+.
T Consensus 301 e~ih~LT 307 (464)
T 1m1j_B 301 DKISQLT 307 (464)
T ss_dssp HHHHHHH
T ss_pred cceeecc
Confidence 4454433
No 272
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=39.67 E-value=14 Score=40.31 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=15.2
Q ss_pred CeeEeeccccCCccccee
Q 042277 578 NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM 595 (899)
...|.-.|++|||||+|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456778999999999887
No 273
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=39.53 E-value=12 Score=45.87 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=25.5
Q ss_pred hhhHHhchHHHHHHHHcCCC------eeEeeccccCCccccee
Q 042277 559 QAEVFSDTQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 559 QeeVF~~v~pLV~svLdGyN------~cIfAYGQTGSGKTyTM 595 (899)
|+.+...+...|..+..|.. ..|+-||++|+|||++.
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 44555555555665555532 58899999999999765
No 274
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=39.53 E-value=4.9e+02 Score=29.85 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=9.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHH
Q 042277 384 GAKSGFEERIKELEHLLQVSRNKV 407 (899)
Q Consensus 384 ~~~~~le~~i~ele~~l~~~~~~~ 407 (899)
..+...+.-..++|..+++.+.+.
T Consensus 20 rvqkana~aka~Ye~~~ae~~a~n 43 (497)
T 3iox_A 20 RVQKANADAKAAYEAAVAANNAAN 43 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333333344444444333333
No 275
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=39.46 E-value=2.4e+02 Score=26.30 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 042277 450 KQEISKAQKSHADDLYCLGVRLKALAGAAENYHAVLAEN 488 (899)
Q Consensus 450 k~~~~~~q~~~~~~~~~l~~~l~~l~~~~~~y~~~~~e~ 488 (899)
|.+...+-++|.+....|...++......++|.....+|
T Consensus 70 K~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~Iq~~~ 108 (119)
T 2avr_X 70 KSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555677777777777766666666666554444
No 276
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=39.37 E-value=19 Score=37.10 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCC-----eeEeeccccCCcccce
Q 042277 567 QPLIRSVLDGYN-----VCIFAYGQTGSGKTYT 594 (899)
Q Consensus 567 ~pLV~svLdGyN-----~cIfAYGQTGSGKTyT 594 (899)
..++..++.|+. ..|+-.|+.|||||+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 445556665543 4588999999999864
No 277
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=39.26 E-value=13 Score=44.80 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=25.7
Q ss_pred ChhhHHhchHHHHHHHHcCCC------eeEeeccccCCccccee
Q 042277 558 TQAEVFSDTQPLIRSVLDGYN------VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 558 tQeeVF~~v~pLV~svLdGyN------~cIfAYGQTGSGKTyTM 595 (899)
.|+++-..+...+.....|.. +.++-||++|+|||++.
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 344554445455555555653 57899999999999776
No 278
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.05 E-value=6.7 Score=45.17 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.5
Q ss_pred CeeEeeccccCCccccee
Q 042277 578 NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM 595 (899)
...++-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357888999999999876
No 279
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.87 E-value=8.1 Score=40.42 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=16.6
Q ss_pred HcCCCeeEeeccccCCccccee
Q 042277 574 LDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 574 LdGyN~cIfAYGQTGSGKTyTM 595 (899)
-.|.-..++-||+.|+|||++.
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHH
Confidence 3454334889999999999876
No 280
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=38.64 E-value=14 Score=39.70 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.6
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
.+|.-.|++|||||+|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 36778899999999987
No 281
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.21 E-value=2.2e+02 Score=27.03 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 042277 263 CLLRKVVQEIERRIST 278 (899)
Q Consensus 263 ~~~~~~~~~~e~~~~~ 278 (899)
.-|.+|...+..||..
T Consensus 28 e~L~~vA~~vd~km~e 43 (138)
T 3hnw_A 28 EYLQRVASYINNKITE 43 (138)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777766653
No 282
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=38.21 E-value=2e+02 Score=24.90 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 042277 432 MDLQHGALRELRFSSDSIKQEISKAQKSHADDL 464 (899)
Q Consensus 432 ~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~ 464 (899)
+...+..+..|+..+..+|+++...-..|.+-+
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677788888888888887777887654
No 283
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=38.10 E-value=11 Score=44.33 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..|..+++|.| ++..++||||||.+..
T Consensus 14 ~~i~~il~g~~--~ll~~~TGsGKTl~~~ 40 (699)
T 4gl2_A 14 EVAQPALEGKN--IIICLPTGCGKTRVAV 40 (699)
T ss_dssp HHHHHHHSSCC--EEECCCTTSCHHHHHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCcHHHHHH
Confidence 45677788877 5678999999998753
No 284
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=37.11 E-value=13 Score=43.01 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccce
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyT 594 (899)
.+|..++.|-+--+++.++||||||.+
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 467778855455668889999999986
No 285
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=37.08 E-value=3.6e+02 Score=27.67 Aligned_cols=24 Identities=25% Similarity=0.298 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhhh
Q 042277 263 CLLRKVVQEIERRISTQADHLRTQ 286 (899)
Q Consensus 263 ~~~~~~~~~~e~~~~~~~~~~~~~ 286 (899)
..|.+.++++-.||..-.+.++..
T Consensus 62 ~~l~p~~ee~~~~l~~~~~~lr~~ 85 (243)
T 2a01_A 62 EQLGPVTQEFWDNLEKETEGLRQE 85 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHhhHHHHHHHHH
Confidence 444555566666666555554443
No 286
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=36.99 E-value=7.3 Score=37.71 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.4
Q ss_pred eEeeccccCCcccceee
Q 042277 580 CIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~ 596 (899)
++.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56678999999998875
No 287
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=36.97 E-value=1.5e+02 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042277 346 LMKEKDQQMLENLALKQELEMAKKTYEL 373 (899)
Q Consensus 346 l~~eke~~~~e~~~LkqeL~~~k~~~e~ 373 (899)
|..+....+..+...+|.|..+.+.++.
T Consensus 10 Lq~e~~~~E~QL~~A~QKLkdA~~~~e~ 37 (78)
T 2ic6_A 10 VQDNITLHEQRLVTTRQKLKDAERAVEL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333344444455555555555544443
No 288
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=36.89 E-value=12 Score=42.62 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..+++.+-.+....++-||++|+|||+...+
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 3444444455566678899999999988754
No 289
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=36.83 E-value=13 Score=42.65 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=28.6
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHH-----HcC----CCeeEeeccccCCccccee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSV-----LDG----YNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~sv-----LdG----yN~cIfAYGQTGSGKTyTM 595 (899)
.++|+.|.+.+ ++-..+..++..+ +.. ....|+-||++|+|||+..
T Consensus 12 ~~~f~di~G~~----~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAE----EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCH----HHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcH----HHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 46788777644 4444444444432 221 2345899999999999865
No 290
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=36.69 E-value=9.1 Score=35.82 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=13.4
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999754
No 291
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=36.41 E-value=2.9e+02 Score=30.06 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 042277 425 ESIYQSFMDLQHGALRELRFSSDSIKQEISK 455 (899)
Q Consensus 425 ~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~ 455 (899)
-..+...+..+..+|+.|...|..+-.++..
T Consensus 259 ~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~ 289 (346)
T 2nrj_A 259 INEMHKALDDAINALTYMSTQWHDLDSQYSG 289 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777777777666443
No 292
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=36.38 E-value=94 Score=26.77 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=9.9
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 042277 348 KEKDQQMLENLALKQELEMA 367 (899)
Q Consensus 348 ~eke~~~~e~~~LkqeL~~~ 367 (899)
+..+.+..|...|+.||...
T Consensus 37 ~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 33444555555555555433
No 293
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=36.36 E-value=9.3 Score=41.98 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=16.8
Q ss_pred HHHcCCCeeEeeccccCCcccceee
Q 042277 572 SVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 572 svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
.+-.|.+.+| .|+||||||+++-
T Consensus 171 ~i~~G~~i~i--vG~sGsGKSTll~ 193 (361)
T 2gza_A 171 AVQLERVIVV--AGETGSGKTTLMK 193 (361)
T ss_dssp HHHTTCCEEE--EESSSSCHHHHHH
T ss_pred HHhcCCEEEE--ECCCCCCHHHHHH
Confidence 3446776554 5999999998873
No 294
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=36.36 E-value=2.3e+02 Score=25.20 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=9.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH
Q 042277 379 ETEYKGAKSGFEERIKELEHLL 400 (899)
Q Consensus 379 e~~~~~~~~~le~~i~ele~~l 400 (899)
.+++++....|..+|+++|..|
T Consensus 14 v~~fe~rL~~Yr~~IeelE~~L 35 (93)
T 3t98_B 14 VQQFEVQLQQYRQQIEELENHL 35 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444555555444
No 295
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=36.15 E-value=63 Score=28.92 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=4.6
Q ss_pred HHHHHhhhhhHHH
Q 042277 379 ETEYKGAKSGFEE 391 (899)
Q Consensus 379 e~~~~~~~~~le~ 391 (899)
+.++.+.+.+.+.
T Consensus 50 E~eL~~~r~e~~~ 62 (95)
T 3mov_A 50 EREMAEIRDQMQQ 62 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 296
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=36.04 E-value=11 Score=37.00 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=21.9
Q ss_pred HHHHHHHc-CCC--eeEeeccccCCcccceee
Q 042277 568 PLIRSVLD-GYN--VCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLd-GyN--~cIfAYGQTGSGKTyTM~ 596 (899)
|-++.++. |+. ..+.-+|++|||||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 45677775 553 468899999999997763
No 297
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.82 E-value=10 Score=37.44 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=19.9
Q ss_pred HHHHHHHc-CC--CeeEeeccccCCcccceee
Q 042277 568 PLIRSVLD-GY--NVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLd-Gy--N~cIfAYGQTGSGKTyTM~ 596 (899)
+-++.++. |. ...+.-+|++|||||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 44566665 43 2356668999999998763
No 298
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=35.74 E-value=1.9e+02 Score=25.76 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 042277 390 EERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHA 461 (899)
Q Consensus 390 e~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~ 461 (899)
.+.+.++|..+...+.++.++|....+-...-.-..+.+...+..+....=.|-+.++++-+++...+..|.
T Consensus 11 ~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl 82 (93)
T 3t98_B 11 RVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443222111000011223333333333333444444444444444444443
No 299
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=35.69 E-value=11 Score=42.13 Aligned_cols=27 Identities=26% Similarity=0.070 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..|..++.|.+ ++..|+||||||.+..
T Consensus 100 ~ai~~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 100 KALERWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHHHHHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCC--EEEEeCCCCCHHHHHH
Confidence 45666777755 5667899999999863
No 300
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=35.60 E-value=87 Score=30.21 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhh
Q 042277 468 GVRLKALAGAAENYHAVLAENRRLFN 493 (899)
Q Consensus 468 ~~~l~~l~~~~~~y~~~~~e~R~l~N 493 (899)
+..|..|....-.|.....++.++-+
T Consensus 89 q~kL~~L~P~~P~Yak~~a~~~q~~~ 114 (158)
T 3tul_A 89 QNKLQSLDPADPGYAQAEAAVEQAGK 114 (158)
T ss_dssp HHHHTTC-------CHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 301
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=35.25 E-value=16 Score=42.28 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=27.9
Q ss_pred eEEeceeeCCCCChhhHHhchHHHHHHH-----HcCC----CeeEeeccccCCccccee
Q 042277 546 MFKFNKVFGPDATQAEVFSDTQPLIRSV-----LDGY----NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v~pLV~sv-----LdGy----N~cIfAYGQTGSGKTyTM 595 (899)
.++||.|.+. +++-..+..++..+ +..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~----~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGA----EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSC----HHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCc----HHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 3567777654 34444444444432 2222 234899999999999876
No 302
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=35.00 E-value=8.1 Score=42.54 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=14.8
Q ss_pred CeeEeeccccCCcccceee
Q 042277 578 NVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~ 596 (899)
|..++..|+||||||+++-
T Consensus 35 ~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHH
Confidence 3445668999999999873
No 303
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=34.35 E-value=11 Score=43.95 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=19.4
Q ss_pred HHHcCCCeeEeeccccCCcccceeec
Q 042277 572 SVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 572 svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.++.-.+..++..|..|||||+|+.-
T Consensus 16 ~av~~~~~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 16 EAVAAPRSNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp HHHTCCSSCEEEEECTTSCHHHHHHH
T ss_pred HHHhCCCCCEEEEECCCCCHHHHHHH
Confidence 33434466788899999999999853
No 304
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=34.25 E-value=11 Score=42.70 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=24.1
Q ss_pred CCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 556 DATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 556 ~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
+..|.+++..+. ..+-+|- ..++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~~---~~i~~~~-~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVM---KAIKEKK-HHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHH---HHHHSSS-CEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHH---HHHhcCC-CEEEEEeCCCCCHHHHHH
Confidence 456766655432 2223333 378899999999998773
No 305
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=34.20 E-value=13 Score=36.82 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred HHHHHHHc-CC--CeeEeeccccCCccccee
Q 042277 568 PLIRSVLD-GY--NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLd-Gy--N~cIfAYGQTGSGKTyTM 595 (899)
|-++.++. |. .-.+.-+|++|||||+.+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 55677774 44 346778999999999876
No 306
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=34.08 E-value=4.1e+02 Score=30.18 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=15.2
Q ss_pred HHHhhHHHHHHhhhhhHHHHHHHHHHHH
Q 042277 373 LRCLHMETEYKGAKSGFEERIKELEHLL 400 (899)
Q Consensus 373 ~~~~~le~~~~~~~~~le~~i~ele~~l 400 (899)
.+..+.++.+.+.-.+|+.+|..|+..+
T Consensus 100 ~q~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 100 EGAQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666665555544
No 307
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=34.08 E-value=15 Score=44.12 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=25.1
Q ss_pred HHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 562 VFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 562 VF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
||.-.....+.++ ++.|-||+.-|.+|||||.+.
T Consensus 77 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 77 MYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 6654433334333 799999999999999999763
No 308
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=33.98 E-value=13 Score=43.89 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..|..++.+ ..++..|+.|||||+|+..
T Consensus 187 ~av~~~l~~--~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 187 YAVKTVLQR--PLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp HHHHHHHTC--SEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHhcC--CCeEEECCCCCCHHHHHHH
Confidence 345566642 3456799999999999643
No 309
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.90 E-value=97 Score=28.09 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh------------H-HHHHHhhhhhHHHHHHHHHHHHHHHHhHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLH------------M-ETEYKGAKSGFEERIKELEHLLQVSRNKVR 408 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~------------l-e~~~~~~~~~le~~i~ele~~l~~~~~~~~ 408 (899)
++..+.++.+.+..|...|+++.+.+.-..+..+.+ + .+=+..+....+..++.|..+++.++..+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666776666555544443221 0 011122223344555556666666666665
Q ss_pred HHhh
Q 042277 409 ELEA 412 (899)
Q Consensus 409 ~le~ 412 (899)
.+++
T Consensus 93 ~lEe 96 (100)
T 1go4_E 93 AMER 96 (100)
T ss_dssp TCC-
T ss_pred HHhc
Confidence 5544
No 310
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=33.71 E-value=17 Score=42.93 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
.+|..++.|.|+ +..++||||||...
T Consensus 20 ~~i~~~l~g~~~--iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 20 ELALPAMKGKNT--IICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCE--EEEcCCCchHHHHH
Confidence 445667888874 67889999999853
No 311
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=33.56 E-value=8.9 Score=37.46 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=12.9
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 312
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=33.51 E-value=9 Score=40.95 Aligned_cols=24 Identities=29% Similarity=0.619 Sum_probs=16.8
Q ss_pred HHHcCCCeeEeeccccCCccccee
Q 042277 572 SVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 572 svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 478899999999999999999866
No 313
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.47 E-value=92 Score=26.86 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHhHH
Q 042277 388 GFEERIKELEHLLQVSRNKV 407 (899)
Q Consensus 388 ~le~~i~ele~~l~~~~~~~ 407 (899)
.++.|+.+||..+.-...-+
T Consensus 11 ~le~Ri~~LE~klAfqE~tI 30 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQAL 30 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556666666554433333
No 314
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=33.19 E-value=12 Score=40.75 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..+..++.| .++..++||+|||.++.-
T Consensus 16 ~~i~~~~~~---~~ll~~~tG~GKT~~~~~ 42 (494)
T 1wp9_A 16 VIYAKCKET---NCLIVLPTGLGKTLIAMM 42 (494)
T ss_dssp HHHHHGGGS---CEEEECCTTSCHHHHHHH
T ss_pred HHHHHHhhC---CEEEEcCCCCCHHHHHHH
Confidence 356667778 445678999999998654
No 315
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=32.90 E-value=16 Score=44.34 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=19.4
Q ss_pred cCCCeeEeeccccCCccccee
Q 042277 575 DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 575 dGyN~cIfAYGQTGSGKTyTM 595 (899)
++.|-||+.-|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 799999999999999999764
No 316
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.54 E-value=3.1e+02 Score=25.47 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
+-+.+-+.+--.-+....+|+..|+..+..-..++.+|+.+++. |.+++++...+++.++.+..++..
T Consensus 39 e~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~----Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 39 KGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITT----LNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhchhhhh
No 317
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=32.52 E-value=17 Score=44.39 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=24.6
Q ss_pred HHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 562 VFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 562 VF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
||.-.....+.++ ++.|-||+.-|.+|||||.+.
T Consensus 123 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 123 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 5554433333333 799999999999999999653
No 318
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=32.41 E-value=9.6 Score=38.05 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.4
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|.-.|++|||||+++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4666899999999876
No 319
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=32.40 E-value=17 Score=43.32 Aligned_cols=46 Identities=30% Similarity=0.577 Sum_probs=30.8
Q ss_pred EEeceeeCCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 547 FKFNKVFGPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 547 F~FD~VF~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
|.+..+ .|...|..-+.. ++..+-.|... ....|.|||||||||..
T Consensus 2 ~~~~~~-~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 334433 777788766543 56666667533 34579999999999964
No 320
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=32.24 E-value=9 Score=43.23 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=0.0
Q ss_pred HHcCCCeeEeeccccCCccccee
Q 042277 573 VLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 573 vLdGyN~cIfAYGQTGSGKTyTM 595 (899)
+++|++..|.-.|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
No 321
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=32.21 E-value=21 Score=39.48 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.7
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
.+|.-.|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 36778899999999987
No 322
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=32.12 E-value=11 Score=43.54 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..+++|.++ +..++||||||.+.
T Consensus 32 ~~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 567778899875 45679999999854
No 323
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=32.10 E-value=3.4e+02 Score=26.29 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRELE 411 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~le 411 (899)
..+..|..+.+.....+..+++.+..+++.|+..+.... .....+.+++.-+.+........+..++.++
T Consensus 36 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~-~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~ 105 (180)
T 1s94_A 36 GFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQ-TDDQMKEELEELMTDIKRTANKVRGKLKTIE 105 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888999999999999999988887666432 2333445555555555555555555555554
No 324
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=31.82 E-value=8.9 Score=42.79 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.7
Q ss_pred CeeEeeccccCCccccee
Q 042277 578 NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM 595 (899)
+.-++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 566789999999999986
No 325
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=31.80 E-value=21 Score=40.41 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=14.8
Q ss_pred eeEeeccccCCcccceee
Q 042277 579 VCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM~ 596 (899)
..|+..|.+|||||+|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456677999999999874
No 326
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=31.55 E-value=10 Score=36.89 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.9
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|.-.|++|||||+.+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999765
No 327
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=31.53 E-value=3.6e+02 Score=25.90 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 042277 391 ERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 391 ~~i~ele~~l~~~~~~~~~l 410 (899)
.++.+|+..|....+.++.+
T Consensus 101 ~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 101 GKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444443
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=31.50 E-value=10 Score=37.03 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=12.5
Q ss_pred EeeccccCCccccee
Q 042277 581 IFAYGQTGSGKTYTM 595 (899)
Q Consensus 581 IfAYGQTGSGKTyTM 595 (899)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999876
No 329
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=30.96 E-value=17 Score=45.52 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=24.6
Q ss_pred HHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 562 VFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 562 VF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
||.-......+++ ++.|-||+..|.+|||||.+.
T Consensus 155 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 155 IFAISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHH
Confidence 5544333333333 799999999999999999763
No 330
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=30.92 E-value=17 Score=44.61 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=25.1
Q ss_pred HHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 562 VFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 562 VF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
||.-......+++ ++.|-||+.-|.+|||||.+.
T Consensus 152 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 152 LFSVADNAYQNMVTDRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhH
Confidence 5654433333333 799999999999999999763
No 331
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=30.89 E-value=1.2e+02 Score=26.54 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHH
Q 042277 387 SGFEERIKELEH 398 (899)
Q Consensus 387 ~~le~~i~ele~ 398 (899)
.+|+.++.+++.
T Consensus 73 ~eLE~~l~el~~ 84 (89)
T 3bas_A 73 YHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 332
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=30.77 E-value=19 Score=45.17 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=24.4
Q ss_pred HHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 562 VFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 562 VF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
||.-......+++ ++.|-||+.-|.+|||||.+.
T Consensus 129 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 129 VYAVTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred HHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 5543333333333 799999999999999999763
No 333
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=30.75 E-value=13 Score=35.78 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.8
Q ss_pred eEeeccccCCcccce
Q 042277 580 CIFAYGQTGSGKTYT 594 (899)
Q Consensus 580 cIfAYGQTGSGKTyT 594 (899)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999864
No 334
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=30.67 E-value=13 Score=35.25 Aligned_cols=16 Identities=38% Similarity=0.462 Sum_probs=13.5
Q ss_pred eeEeeccccCCcccce
Q 042277 579 VCIFAYGQTGSGKTYT 594 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyT 594 (899)
..|+-.|..|||||+.
T Consensus 3 ~~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEecCCCCCHHHH
Confidence 3588899999999874
No 335
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=30.65 E-value=19 Score=43.92 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=24.4
Q ss_pred HHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 562 VFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 562 VF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
||.-.......++ ++.|-||+.-|.+|||||.+.
T Consensus 154 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 154 IFSISDNAYQYMLTDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHH
Confidence 4443333333333 799999999999999999764
No 336
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=30.62 E-value=19 Score=44.01 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=24.2
Q ss_pred HHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 562 VFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 562 VF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
||.-......+++ ++.|-||+.-|.+|||||.+.
T Consensus 139 ifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 139 IFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 4544333333333 699999999999999999663
No 337
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=30.57 E-value=10 Score=39.40 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.4
Q ss_pred CeeEeeccccCCcccceeec
Q 042277 578 NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~G 597 (899)
...||..|..|+||||+|..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 35699999999999999865
No 338
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=30.55 E-value=19 Score=35.53 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=20.2
Q ss_pred HHHHHHHHc---CCCeeEeeccccCCccccee
Q 042277 567 QPLIRSVLD---GYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 567 ~pLV~svLd---GyN~cIfAYGQTGSGKTyTM 595 (899)
..+++.++. .-...|.-.|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 445555553 33456788999999999765
No 339
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=30.52 E-value=1.8e+02 Score=28.36 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhHHHH
Q 042277 394 KELEHLLQVSRNKVRE 409 (899)
Q Consensus 394 ~ele~~l~~~~~~~~~ 409 (899)
.++...+++++.++.+
T Consensus 69 d~l~~~~~~l~~~L~P 84 (165)
T 1gs9_A 69 KELKAYKSELEEQLTP 84 (165)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 3333334444444433
No 340
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=29.78 E-value=11 Score=37.47 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.4
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.+.-.|++|||||+++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999877
No 341
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=29.64 E-value=11 Score=36.49 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.1
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
.+|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999865
No 342
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=29.63 E-value=19 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccce
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyT 594 (899)
..|..++.|.+ ++..|+||||||.+
T Consensus 46 ~aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 46 EAVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHHcCCC--EEEEECCCCcHHHH
Confidence 34667788865 67899999999954
No 343
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.60 E-value=1.8e+02 Score=26.19 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=12.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 042277 348 KEKDQQMLENLALKQELEMAKKTYEL 373 (899)
Q Consensus 348 ~eke~~~~e~~~LkqeL~~~k~~~e~ 373 (899)
.+....+..+...+|.|..+.+.++.
T Consensus 12 ~e~~~~E~QL~~A~QKLkdA~~~~e~ 37 (96)
T 2ic9_A 12 DNITLHEQRLVTTRQKLKDAERAVEL 37 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444455555555555544443
No 344
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=29.31 E-value=23 Score=40.34 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.7
Q ss_pred CeeEeeccccCCcccceeec
Q 042277 578 NVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 578 N~cIfAYGQTGSGKTyTM~G 597 (899)
...|+..|.+|+|||+|...
T Consensus 100 p~vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHH
Confidence 45788899999999999854
No 345
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=29.24 E-value=14 Score=35.16 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.1
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999654
No 346
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=29.15 E-value=14 Score=39.45 Aligned_cols=17 Identities=47% Similarity=0.810 Sum_probs=14.0
Q ss_pred eEeeccccCCcccceee
Q 042277 580 CIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~ 596 (899)
.|.-.|++|+|||+|+.
T Consensus 107 vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55567999999999984
No 347
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.11 E-value=4e+02 Score=25.80 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=10.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 042277 439 LRELRFSSDSIKQEISKAQKSHAD 462 (899)
Q Consensus 439 l~~l~~~~~~~k~~~~~~q~~~~~ 462 (899)
+..|...+..+...+..++.++..
T Consensus 105 l~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 105 LISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 348
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=29.11 E-value=2.7e+02 Score=23.76 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 042277 389 FEERIKELEHLLQVSRNKVR 408 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~ 408 (899)
|..+++.++..++.....+.
T Consensus 46 L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 46 LQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444443
No 349
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=29.00 E-value=14 Score=35.55 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=14.0
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
..|+-.|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999754
No 350
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=28.98 E-value=14 Score=39.83 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=13.2
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
+|.-.|++|||||+++
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4555699999999987
No 351
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=28.94 E-value=12 Score=39.53 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=15.5
Q ss_pred CCeeEeeccccCCccccee
Q 042277 577 YNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM 595 (899)
|+-+|...|++|+|||+.|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3456788999999999876
No 352
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.81 E-value=85 Score=23.99 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 389 FEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~~le~ 412 (899)
||.+.++++....+++..+.-++.
T Consensus 8 LE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555544444444444443
No 353
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=28.79 E-value=20 Score=43.48 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
..|..++.|.| ++..++||||||.+..
T Consensus 255 ~~i~~~l~~~~--~ll~~~TGsGKTl~~~ 281 (797)
T 4a2q_A 255 ELAQPAINGKN--ALICAPTGSGKTFVSI 281 (797)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHHHHHhCCC--EEEEeCCCChHHHHHH
Confidence 35667788877 4667899999998753
No 354
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=28.66 E-value=19 Score=35.78 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=14.6
Q ss_pred CCeeEeeccccCCccccee
Q 042277 577 YNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM 595 (899)
-.-.|.-.|++|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445667899999999766
No 355
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=28.45 E-value=12 Score=36.71 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=12.7
Q ss_pred EeeccccCCccccee
Q 042277 581 IFAYGQTGSGKTYTM 595 (899)
Q Consensus 581 IfAYGQTGSGKTyTM 595 (899)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999876
No 356
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=28.45 E-value=15 Score=42.46 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=14.0
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
+|.-.|++|||||+++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5777899999999887
No 357
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=28.42 E-value=16 Score=43.85 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..+++.+.......++-||++|+|||+.+.+
T Consensus 196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 4455555555666778899999999987644
No 358
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=28.37 E-value=22 Score=44.84 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=25.5
Q ss_pred HHhchHHHHHHHH-cCCCeeEeeccccCCccccee
Q 042277 562 VFSDTQPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 562 VF~~v~pLV~svL-dGyN~cIfAYGQTGSGKTyTM 595 (899)
||.-.......++ ++.|-||+.-|.+|||||.+.
T Consensus 127 IfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 127 VFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 6654444444443 799999999999999999764
No 359
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=28.26 E-value=3.6e+02 Score=24.90 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 042277 427 IYQSFMDLQHGALRELRFSSDSIKQEISKAQKSHADDLYCL 467 (899)
Q Consensus 427 ~~~~~~~~~~~~l~~l~~~~~~~k~~~~~~q~~~~~~~~~l 467 (899)
+++.++......+...+..+...+..+...+..|.+.....
T Consensus 71 ~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~ 111 (150)
T 3ajw_A 71 NYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRL 111 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777665443
No 360
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=27.93 E-value=10 Score=39.02 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=16.2
Q ss_pred eeEeeccccCCcccceeec
Q 042277 579 VCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM~G 597 (899)
..++-||.+|||||..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4678899999999988865
No 361
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.75 E-value=16 Score=36.50 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=18.7
Q ss_pred HHHHHcC-C--CeeEeeccccCCccccee
Q 042277 570 IRSVLDG-Y--NVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 570 V~svLdG-y--N~cIfAYGQTGSGKTyTM 595 (899)
++.+|.| + ...+.-+|++|||||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4556543 3 346778999999999885
No 362
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=27.66 E-value=9.9 Score=37.56 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.3
Q ss_pred eEeeccccCCcccceeec
Q 042277 580 CIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~G 597 (899)
.++-||+.|||||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999998865
No 363
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=27.65 E-value=20 Score=44.56 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=20.1
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceee
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
.|..++.|.|+ +..++||||||.+..
T Consensus 256 ai~~il~g~~~--ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 256 LAQPAINGKNA--LICAPTGSGKTFVSI 281 (936)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHHH
T ss_pred HHHHHHcCCCE--EEEeCCCchHHHHHH
Confidence 45667888774 567899999998754
No 364
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=27.54 E-value=7.2e+02 Score=28.22 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 042277 432 MDLQHGALRELRFSSDSIKQEISKAQ 457 (899)
Q Consensus 432 ~~~~~~~l~~l~~~~~~~k~~~~~~q 457 (899)
...+..+|+.|+..+..+++.|+++.
T Consensus 158 ~~~~~~~i~~l~~~~~~~~~~i~~l~ 183 (461)
T 3ghg_B 158 NSNIPTNLRVLRSILENLRSKIQKLE 183 (461)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777776666666655444
No 365
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=27.51 E-value=2.1e+02 Score=25.74 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=6.4
Q ss_pred HhhhhhHHHHHHHHHH
Q 042277 383 KGAKSGFEERIKELEH 398 (899)
Q Consensus 383 ~~~~~~le~~i~ele~ 398 (899)
.....+|+..|.+|+.
T Consensus 46 d~t~~eL~~EI~~L~~ 61 (96)
T 1t3j_A 46 DMTQKHLEEEIARLSK 61 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 366
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=27.50 E-value=18 Score=44.12 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=32.9
Q ss_pred eeEEeceeeCCCCChhhHHhch-HHHHH-HHHcC----CCeeEeeccccCCccccee
Q 042277 545 RMFKFNKVFGPDATQAEVFSDT-QPLIR-SVLDG----YNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 545 k~F~FD~VF~~~atQeeVF~~v-~pLV~-svLdG----yN~cIfAYGQTGSGKTyTM 595 (899)
..+.||.|.+.+..-..+.+.+ .|+-. .++.. ...+|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3578888887766655555554 33332 23332 2346889999999999765
No 367
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=27.49 E-value=13 Score=36.24 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.2
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999765
No 368
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=27.33 E-value=15 Score=36.95 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=9.0
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999876
No 369
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=27.30 E-value=1.8e+02 Score=26.86 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=12.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 042277 349 EKDQQMLENLALKQELEMAKKTYEL 373 (899)
Q Consensus 349 eke~~~~e~~~LkqeL~~~k~~~e~ 373 (899)
+.-..+..+...+|.|..+.+.+|.
T Consensus 30 Ei~~~E~QL~~ArQKLkdA~~~~e~ 54 (113)
T 4fi5_A 30 EINAHEGQLVIARQKVRDAEKQYEK 54 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444455555555555554443
No 370
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=27.25 E-value=28 Score=41.91 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 567 QPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 567 ~pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..++..+..+....++-||++|+|||....+
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 4445555556666788999999999987644
No 371
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=27.20 E-value=26 Score=44.10 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccc
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTY 593 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTy 593 (899)
..+..+++|.| +++.++||||||.
T Consensus 63 ~ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 63 MWAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCCHHH
Confidence 45667888876 4678999999994
No 372
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=27.09 E-value=13 Score=35.92 Aligned_cols=16 Identities=31% Similarity=0.411 Sum_probs=13.3
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999876
No 373
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=26.98 E-value=14 Score=37.18 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=13.9
Q ss_pred eEeeccccCCcccceee
Q 042277 580 CIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~ 596 (899)
++.-.|++|||||+.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999998874
No 374
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.98 E-value=2.2e+02 Score=24.33 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHH
Q 042277 353 QMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLL 400 (899)
Q Consensus 353 ~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l 400 (899)
....+..|..+|..++...+.++.+- ..+-+.|..|+..|..+...|
T Consensus 10 ~~~~i~~lE~eL~~~r~e~~~ql~EY-q~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 10 SRRLLAEKEREMAEMRARMQQQLDEY-QELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333322 123334444444444444443
No 375
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=26.82 E-value=21 Score=41.15 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
-++..++.|. -|+-||++|+|||+....
T Consensus 33 ~l~~al~~~~--~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 33 LCLLAALSGE--SVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHTC--EEEEECCSSSSHHHHHHH
T ss_pred HHHHHHhcCC--eeEeecCchHHHHHHHHH
Confidence 3444555565 467799999999987643
No 376
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=26.68 E-value=17 Score=35.80 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=13.5
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
+|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999664
No 377
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.51 E-value=3.4e+02 Score=24.00 Aligned_cols=28 Identities=32% Similarity=0.271 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEMAK 368 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~~k 368 (899)
..++-+....-.++.++..|..++...+
T Consensus 16 dRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 16 DRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444555555555554443
No 378
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=26.39 E-value=14 Score=36.65 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=14.0
Q ss_pred HHcCCCeeEeeccccCCccccee
Q 042277 573 VLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 573 vLdGyN~cIfAYGQTGSGKTyTM 595 (899)
+-.|. ++.-.|++|||||+++
T Consensus 17 i~~Ge--i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVGR--VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp --CCC--EEEEECSTTSSHHHHH
T ss_pred CCCCC--EEEEECCCCCCHHHHH
Confidence 34454 3445799999999876
No 379
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=26.22 E-value=2.4e+02 Score=25.15 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=21.9
Q ss_pred HhhHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 042277 375 CLHMETEYKGAKSGFEERIKELEHLLQVS 403 (899)
Q Consensus 375 ~~~le~~~~~~~~~le~~i~ele~~l~~~ 403 (899)
+-+||......|..||+.|..|+..|+..
T Consensus 59 vyeLE~~h~kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 59 VYERELTHRKMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677778888888888888888877643
No 380
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=26.05 E-value=18 Score=40.87 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=19.3
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.|..++.|.+ ++..|+||||||.+..-
T Consensus 121 ai~~~~~~~~--~ll~~~tGsGKT~~~~~ 147 (510)
T 2oca_A 121 AVFEGLVNRR--RILNLPTSAGRSLIQAL 147 (510)
T ss_dssp HHHHHHHHSE--EEEECCSTTTHHHHHHH
T ss_pred HHHHHHhcCC--cEEEeCCCCCHHHHHHH
Confidence 4555566654 46679999999998643
No 381
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=25.83 E-value=13 Score=40.30 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=16.0
Q ss_pred HHcCCCeeEeeccccCCcccceee
Q 042277 573 VLDGYNVCIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 573 vLdGyN~cIfAYGQTGSGKTyTM~ 596 (899)
+-.|.++ .-.|+||||||+++-
T Consensus 168 i~~g~~v--~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 168 IAIGKNV--IVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHHTCCE--EEEESTTSCHHHHHH
T ss_pred ccCCCEE--EEECCCCCCHHHHHH
Confidence 3356654 457999999998773
No 382
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=25.82 E-value=18 Score=34.52 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.8
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
..|+-.|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999998653
No 383
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=25.81 E-value=25 Score=43.10 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=47.0
Q ss_pred eEEeceeeCCCCChhhHHhch-HHHHH-HHHcCCC----eeEeeccccCCcccceeec--------------CCCCCCCc
Q 042277 546 MFKFNKVFGPDATQAEVFSDT-QPLIR-SVLDGYN----VCIFAYGQTGSGKTYTMSG--------------PSGPHEED 605 (899)
Q Consensus 546 ~F~FD~VF~~~atQeeVF~~v-~pLV~-svLdGyN----~cIfAYGQTGSGKTyTM~G--------------~~~~~~~~ 605 (899)
...||.|-+-+..-+++.+.+ -|+-. .++.++. ..|+-||+.|+|||...-- +. -....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~-l~sk~ 278 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE-IMSKL 278 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHH-HHSSC
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHH-hhccc
Confidence 467888887776656665554 45542 4555554 4699999999999965421 10 00123
Q ss_pred cchhHHHHHHHHHhhhc
Q 042277 606 WGVNYRALNDLFNLSQN 622 (899)
Q Consensus 606 ~GIipRal~~LF~~~~~ 622 (899)
.|-..+.+..+|.....
T Consensus 279 ~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEK 295 (806)
T ss_dssp TTHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45566777888876543
No 384
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.74 E-value=4.1e+02 Score=24.70 Aligned_cols=49 Identities=22% Similarity=0.136 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042277 352 QQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSR 404 (899)
Q Consensus 352 ~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~ 404 (899)
.....|..|+.+++.++...+. +..+.......|+.++.+|+..|+..+
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~----l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLEN----MKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788877766654333 344445555556666666666555444
No 385
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=25.73 E-value=22 Score=43.45 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..|..++.+ ..++..|+.|||||+|+..
T Consensus 363 ~Av~~~l~~--~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 363 YAVKTVLQR--PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp HHHHHHHTS--SEEEEECCTTSCHHHHHHH
T ss_pred HHHHHhccC--CeEEEEcCCCCCHHHHHHH
Confidence 455666653 3456899999999999754
No 386
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=25.70 E-value=20 Score=40.11 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=13.7
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999884
No 387
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=25.61 E-value=3.3e+02 Score=30.58 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 042277 429 QSFMDLQHGALRELRF 444 (899)
Q Consensus 429 ~~~~~~~~~~l~~l~~ 444 (899)
+..+..+..+|++|+.
T Consensus 97 ~~~~~~~~~~i~~l~~ 112 (411)
T 3ghg_C 97 EASILTHDSSIRYLQE 112 (411)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3444444445555544
No 388
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=25.46 E-value=20 Score=43.72 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
..|..++.+ ..++..|+.|||||+|+..
T Consensus 367 ~Av~~~l~~--~~~lI~GppGTGKT~~i~~ 394 (802)
T 2xzl_A 367 NAVSHVLQR--PLSLIQGPPGTGKTVTSAT 394 (802)
T ss_dssp HHHHHHTTC--SEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHhcC--CCEEEECCCCCCHHHHHHH
Confidence 445555543 3456799999999999743
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=25.42 E-value=14 Score=36.69 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=13.6
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|.-.|++|||||+++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4567899999999887
No 390
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.22 E-value=4.5e+02 Score=26.70 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=9.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 042277 348 KEKDQQMLENLALKQELEMAK 368 (899)
Q Consensus 348 ~eke~~~~e~~~LkqeL~~~k 368 (899)
.+.+....++..|+.+|+..-
T Consensus 146 ~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 146 KENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 391
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=25.13 E-value=21 Score=41.80 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=19.3
Q ss_pred HHHHHHcCCCeeEeeccccCCcccceeec
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM~G 597 (899)
.|..++.+ ..++-.|..|||||+|+..
T Consensus 197 Av~~~~~~--~~~~I~G~pGTGKTt~i~~ 223 (574)
T 3e1s_A 197 VLDQLAGH--RLVVLTGGPGTGKSTTTKA 223 (574)
T ss_dssp HHHHHTTC--SEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHhC--CEEEEEcCCCCCHHHHHHH
Confidence 44555543 4566799999999998743
No 392
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=25.02 E-value=13 Score=37.36 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.4
Q ss_pred eEeeccccCCcccceeec
Q 042277 580 CIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~G 597 (899)
.++-||+.|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 567899999999988865
No 393
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=24.88 E-value=27 Score=42.59 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=26.9
Q ss_pred CCCCChhhHHhchHHHHHHHHcCCCeeEeeccccCCccccee
Q 042277 554 GPDATQAEVFSDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 554 ~~~atQeeVF~~v~pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
.+..-|.+++..+ ....-.|....++..|+||||||.+.
T Consensus 368 ~lt~~Q~~ai~~I---~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEI---RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHH---HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHH---HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 4556676665543 33444566567788999999999765
No 394
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=24.83 E-value=18 Score=34.22 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.3
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999998754
No 395
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.70 E-value=3.9e+02 Score=29.93 Aligned_cols=6 Identities=0% Similarity=0.218 Sum_probs=2.6
Q ss_pred HHHHHh
Q 042277 614 NDLFNL 619 (899)
Q Consensus 614 ~~LF~~ 619 (899)
+.|+.+
T Consensus 231 e~ih~L 236 (409)
T 1m1j_C 231 EKIHLI 236 (409)
T ss_dssp HHHHHH
T ss_pred cceeec
Confidence 444443
No 396
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=24.65 E-value=15 Score=37.01 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.1
Q ss_pred EeeccccCCccccee
Q 042277 581 IFAYGQTGSGKTYTM 595 (899)
Q Consensus 581 IfAYGQTGSGKTyTM 595 (899)
+.-.|++|||||+.+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999876
No 397
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.61 E-value=3.7e+02 Score=23.84 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=7.8
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 042277 438 ALRELRFSSDSIKQEISKAQ 457 (899)
Q Consensus 438 ~l~~l~~~~~~~k~~~~~~q 457 (899)
.+..|+.....++.++..+.
T Consensus 79 ~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 79 TLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444443333333333333
No 398
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=24.54 E-value=22 Score=40.17 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=13.1
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.++..|+||||||.+.
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3567899999999883
No 399
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.52 E-value=23 Score=37.28 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=15.1
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67888999999999876
No 400
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=24.36 E-value=22 Score=39.92 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=15.9
Q ss_pred HHcCCCeeEeeccccCCccccee
Q 042277 573 VLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 573 vLdGyN~cIfAYGQTGSGKTyTM 595 (899)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345655 467899999999884
No 401
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=24.31 E-value=20 Score=33.62 Aligned_cols=16 Identities=19% Similarity=0.023 Sum_probs=13.2
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999754
No 402
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=24.16 E-value=19 Score=37.28 Aligned_cols=15 Identities=47% Similarity=0.519 Sum_probs=12.4
Q ss_pred eEeeccccCCcccce
Q 042277 580 CIFAYGQTGSGKTYT 594 (899)
Q Consensus 580 cIfAYGQTGSGKTyT 594 (899)
.|+-.|++|||||+.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467899999999863
No 403
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=23.93 E-value=23 Score=34.74 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=14.8
Q ss_pred CCeeEeeccccCCccccee
Q 042277 577 YNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM 595 (899)
-...|.-.|++|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456777899999999764
No 404
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.90 E-value=4.4e+02 Score=24.42 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 042277 358 LALKQELEMAK 368 (899)
Q Consensus 358 ~~LkqeL~~~k 368 (899)
..+..++..++
T Consensus 16 ~~~~eel~~lk 26 (129)
T 2fxo_A 16 ASMKEEFTRLK 26 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 405
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=23.80 E-value=4.2e+02 Score=25.60 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=7.0
Q ss_pred CCEEEEEecCC
Q 042277 500 GNIRVYCRIRP 510 (899)
Q Consensus 500 GnIrV~~RVRP 510 (899)
|.|--+|.|..
T Consensus 115 g~vE~~v~V~v 125 (150)
T 4dci_A 115 GQLESSCEIKV 125 (150)
T ss_dssp EEEEECCEECT
T ss_pred ceeeEEEEEec
Confidence 55666666665
No 406
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=23.76 E-value=42 Score=35.80 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=13.6
Q ss_pred eEeeccccCCcccceee
Q 042277 580 CIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~ 596 (899)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999998874
No 407
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=23.70 E-value=6.3e+02 Score=26.19 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 042277 342 DVAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 342 ~~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~l 410 (899)
.+..|..+.+.....+..+++.++.+++.|...+..... ....+.+++.-..++.......+..++.+
T Consensus 29 ~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~-~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l 96 (267)
T 1dn1_B 29 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP-DEKTKEELEELMSDIKKTANKVRSKLKSI 96 (267)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888889999999998888888765443211 01223334444444444444444444444
No 408
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.62 E-value=3.6e+02 Score=23.33 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=20.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHHhh
Q 042277 379 ETEYKGAKSGFEERIKELEHLLQVSRNKVRELEA 412 (899)
Q Consensus 379 e~~~~~~~~~le~~i~ele~~l~~~~~~~~~le~ 412 (899)
.+++++...+|+....+++..++.++.+.++++.
T Consensus 41 ~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 41 HQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666644
No 409
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=23.48 E-value=21 Score=42.30 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.5
Q ss_pred CCeeEeeccccCCcccceeec
Q 042277 577 YNVCIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 577 yN~cIfAYGQTGSGKTyTM~G 597 (899)
.+..++..|..|||||+|+..
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~~ 34 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVITN 34 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHH
Confidence 456778889999999999963
No 410
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=23.14 E-value=17 Score=34.82 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=13.3
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
+..-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4568999999999765
No 411
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=23.05 E-value=24 Score=34.21 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=15.9
Q ss_pred cCCCeeEeeccccCCccccee
Q 042277 575 DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 575 dGyN~cIfAYGQTGSGKTyTM 595 (899)
.+....|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 445567888999999999753
No 412
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=22.98 E-value=17 Score=43.36 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=15.8
Q ss_pred HHcCCCeeEeeccccCCccccee
Q 042277 573 VLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 573 vLdGyN~cIfAYGQTGSGKTyTM 595 (899)
+.+|.| ++..|+||||||...
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHHH
Confidence 345544 678999999999664
No 413
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=22.77 E-value=20 Score=39.22 Aligned_cols=24 Identities=29% Similarity=0.619 Sum_probs=21.3
Q ss_pred HHHcCCCeeEeeccccCCccccee
Q 042277 572 SVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 572 svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 467899999999999999999765
No 414
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.75 E-value=74 Score=37.31 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred hhhhhhHhhhhhhhhhhHHhhhhHHHHHHHhhcCCchhhHHHHHHHHHHHhhhhhHHHhhhcchHHHHHHHHHHHHhHHH
Q 042277 277 STQADHLRTQNNLFKTREEKYQSRIRVLEALASGTGEETEIVMNQLQQIKTEKSKLEEKKKLEDDDVAKLMKEKDQQMLE 356 (899)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~~~e~~k~ee~~~~~~~~~~~l~~eke~~~~e 356 (899)
++...+++.| |+|+|.+..+. +.+|..++.....+|-++.-.++.+.++..+....+.+
T Consensus 299 ~~e~qqm~~~-----a~e~~~~~~~e----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (575)
T 2i1j_A 299 TIDVQQMKAQ-----AREEKLAKQAQ----------------REKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQAN 357 (575)
T ss_dssp CHHHHHHHHH-----HHHHHHHHHHH----------------HTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-----HHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH---HHHHHHHHHHHHHhhHHHHHHhhhhh---HHHHHHHHHHHHHHHHhHHHHHhhcchhhHHHhhhhHHHHHH
Q 042277 357 NLALKQ---ELEMAKKTYELRCLHMETEYKGAKSG---FEERIKELEHLLQVSRNKVRELEANSDSKYQRWSRKESIYQS 430 (899)
Q Consensus 357 ~~~Lkq---eL~~~k~~~e~~~~~le~~~~~~~~~---le~~i~ele~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~ 430 (899)
+..-.+ .|++..+..+++...|+.+..++..+ |+.....-+..-+.+..++.+.+..-..-.+..+.++.....
T Consensus 358 l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~ 437 (575)
T 2i1j_A 358 LLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRR 437 (575)
T ss_dssp HHHHHHC-------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 042277 431 FMDLQHGALRELRFSSDSIK 450 (899)
Q Consensus 431 ~~~~~~~~l~~l~~~~~~~k 450 (899)
+-......-..++.+...+.
T Consensus 438 ~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 438 LQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp ----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 415
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=22.42 E-value=19 Score=38.83 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.5
Q ss_pred eEeeccccCCcccceee
Q 042277 580 CIFAYGQTGSGKTYTMS 596 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~ 596 (899)
.|+-.|++|||||+|+.
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 56788999999999873
No 416
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=22.26 E-value=21 Score=42.74 Aligned_cols=20 Identities=45% Similarity=0.654 Sum_probs=15.3
Q ss_pred HHcCCCeeEeeccccCCcccce
Q 042277 573 VLDGYNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 573 vLdGyN~cIfAYGQTGSGKTyT 594 (899)
.++|. .|+..|+||||||+.
T Consensus 152 ~l~rk--~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTYH 171 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHHH
T ss_pred hcCCC--EEEEEcCCCCCHHHH
Confidence 44554 467899999999984
No 417
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=22.14 E-value=4.4e+02 Score=23.84 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHH
Q 042277 343 VAKLMKEKDQQMLENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVRE 409 (899)
Q Consensus 343 ~~~l~~eke~~~~e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~ 409 (899)
+..+...+.....++...++..+.++++.-.-...+.--.-...+++..+|-++...|.+....++|
T Consensus 16 ~q~~~~kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~E 82 (101)
T 3teq_A 16 VQYYNIKKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAALRE 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555544444333333222212222333445555555555544444433
No 418
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=22.12 E-value=21 Score=37.52 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.8
Q ss_pred HcCCCeeEeeccccCCccccee
Q 042277 574 LDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 574 LdGyN~cIfAYGQTGSGKTyTM 595 (899)
+.. ..++-||+.|+|||+.+
T Consensus 28 l~~--~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 28 LRA--PITLVLGLRRTGKSSII 47 (357)
T ss_dssp TCS--SEEEEEESTTSSHHHHH
T ss_pred hcC--CcEEEECCCCCCHHHHH
Confidence 554 58899999999999876
No 419
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=22.04 E-value=23 Score=33.83 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=13.7
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
..|+-.|..|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999998753
No 420
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.95 E-value=3.2e+02 Score=26.02 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=0.9
Q ss_pred HHHHHHHHHHHHHhh
Q 042277 431 FMDLQHGALRELRFS 445 (899)
Q Consensus 431 ~~~~~~~~l~~l~~~ 445 (899)
+++.++.+|++|+..
T Consensus 118 ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 118 LLDTLTLQLKNLKKV 132 (135)
T ss_dssp CC-------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455566666543
No 421
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.90 E-value=4e+02 Score=24.23 Aligned_cols=17 Identities=35% Similarity=0.249 Sum_probs=7.3
Q ss_pred HHHHhHHHHHHHHHHHH
Q 042277 349 EKDQQMLENLALKQELE 365 (899)
Q Consensus 349 eke~~~~e~~~LkqeL~ 365 (899)
+|....-++..||-.|+
T Consensus 24 EKsal~YqVdlLKD~LE 40 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 422
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=21.87 E-value=44 Score=37.71 Aligned_cols=18 Identities=44% Similarity=0.545 Sum_probs=15.1
Q ss_pred eEeeccccCCcccceeec
Q 042277 580 CIFAYGQTGSGKTYTMSG 597 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM~G 597 (899)
.|.-.|++|+|||+|...
T Consensus 101 vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CEEEECCSSSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 577789999999998743
No 423
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=21.83 E-value=24 Score=33.83 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.3
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 424
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.70 E-value=5e+02 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=20.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhHHHHHh
Q 042277 381 EYKGAKSGFEERIKELEHLLQVSRNKVRELE 411 (899)
Q Consensus 381 ~~~~~~~~le~~i~ele~~l~~~~~~~~~le 411 (899)
++.....+|+.-++.++..|+++..-+...+
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777766654
No 425
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=21.59 E-value=23 Score=34.03 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.2
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 426
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=21.56 E-value=23 Score=34.94 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=12.6
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|+-.|++|||||+.+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998643
No 427
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=21.39 E-value=20 Score=37.37 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=17.4
Q ss_pred cCCCeeEeeccccCCccccee
Q 042277 575 DGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 575 dGyN~cIfAYGQTGSGKTyTM 595 (899)
.|+...|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588899999999999999765
No 428
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=21.38 E-value=6.7e+02 Score=25.66 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q 042277 264 LLRKVVQEIERRISTQADHLRTQNNLFKTR 293 (899)
Q Consensus 264 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 293 (899)
-+.++++|+|++.+.-.+-|+..-..+..|
T Consensus 8 e~e~~~~eYe~~as~Ll~WI~~~~~~l~~r 37 (235)
T 2odv_A 8 ELQLRWQEYRELVLLLLQWMRHHTAAFEER 37 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355677899999887776666655444444
No 429
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=21.28 E-value=28 Score=43.68 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCeeEeeccccCCccccee
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
..|..++.|.| ++..++||||||...
T Consensus 93 eai~~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 93 TAISCIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHHHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCChHHHH
Confidence 34556677776 678899999999763
No 430
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=21.19 E-value=1.7e+02 Score=23.06 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042277 853 RELMEQVASLKDTIAKKDDEIERLQLLKDLKNV 885 (899)
Q Consensus 853 ~~L~eqv~~Lk~~i~~~~~e~e~lq~l~~~~~~ 885 (899)
..|...|..|+.....++.||+||+.+......
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHgl 46 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHcCC
Confidence 345667788888888999999999998776543
No 431
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=21.06 E-value=31 Score=43.73 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCeeEeeccccCCcccce
Q 042277 568 PLIRSVLDGYNVCIFAYGQTGSGKTYT 594 (899)
Q Consensus 568 pLV~svLdGyN~cIfAYGQTGSGKTyT 594 (899)
..|..++.|.+ ++..|+||||||..
T Consensus 191 ~AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 191 TAISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCChHHH
Confidence 34566678866 47899999999965
No 432
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.97 E-value=2.6e+02 Score=21.08 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 042277 341 DDVAKLMKEKDQQMLENLALKQELEM 366 (899)
Q Consensus 341 ~~~~~l~~eke~~~~e~~~LkqeL~~ 366 (899)
+++..+.++.+..+..+..|+..|..
T Consensus 20 eelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555543
No 433
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=20.94 E-value=24 Score=34.22 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.4
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999753
No 434
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.90 E-value=78 Score=21.43 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042277 852 VRELMEQVASLKDTIAKKDDEIERL 876 (899)
Q Consensus 852 ~~~L~eqv~~Lk~~i~~~~~e~e~l 876 (899)
++.|+..-+.||++|+.++-||..|
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3456666777787777777766544
No 435
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.86 E-value=5.1e+02 Score=24.08 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 042277 459 SHADDLYCLGVRLKAL 474 (899)
Q Consensus 459 ~~~~~~~~l~~~l~~l 474 (899)
+|......|...++..
T Consensus 79 ~Y~~~~keLd~~ik~q 94 (119)
T 3etw_A 79 KYEDALKKLEAEMEQQ 94 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 436
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=20.60 E-value=25 Score=33.17 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=13.0
Q ss_pred eEeeccccCCccccee
Q 042277 580 CIFAYGQTGSGKTYTM 595 (899)
Q Consensus 580 cIfAYGQTGSGKTyTM 595 (899)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999998643
No 437
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.43 E-value=2.4e+02 Score=21.21 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 042277 389 FEERIKELEHLLQVSRNKVR 408 (899)
Q Consensus 389 le~~i~ele~~l~~~~~~~~ 408 (899)
|+..++.+|..+..++.++.
T Consensus 25 leselqalekklaalksklq 44 (48)
T 1g6u_A 25 LESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555554444443
No 438
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.34 E-value=22 Score=36.20 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.5
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
-.|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788899999999865
No 439
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=20.33 E-value=27 Score=33.23 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=13.8
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
.+|+-.|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35777899999999764
No 440
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=20.27 E-value=29 Score=32.98 Aligned_cols=17 Identities=41% Similarity=0.475 Sum_probs=9.9
Q ss_pred eeEeeccccCCccccee
Q 042277 579 VCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 579 ~cIfAYGQTGSGKTyTM 595 (899)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999753
No 441
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=20.25 E-value=24 Score=41.90 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=18.1
Q ss_pred HHHHHHcCCCeeEeeccccCCccccee
Q 042277 569 LIRSVLDGYNVCIFAYGQTGSGKTYTM 595 (899)
Q Consensus 569 LV~svLdGyN~cIfAYGQTGSGKTyTM 595 (899)
++..+++|.| ++..|+||||||...
T Consensus 33 ~i~~i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 33 AVEKVFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp HHHHHTTCSC--EEEECSSHHHHHHHH
T ss_pred HHHHHhCCCc--EEEEcCCccHHHHHH
Confidence 3444566665 467899999999775
No 442
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.23 E-value=3.6e+02 Score=24.11 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 042277 356 ENLALKQELEMAKKTYELRCLHMETEYKGAKSGFEERIKELEHLLQVSRNKVREL 410 (899)
Q Consensus 356 e~~~LkqeL~~~k~~~e~~~~~le~~~~~~~~~le~~i~ele~~l~~~~~~~~~l 410 (899)
.+.-|+++...-+..++.+ +.++..+.+++++|...++.+..++..|
T Consensus 41 ~i~vLk~Qv~IY~~DF~aE--------RadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 41 TVPVLKAQADIYKADFQAE--------RHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555544444443332 2333445555555555555555554433
Done!