Query 042279
Match_columns 92
No_of_seqs 114 out of 636
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:41:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1und_A Advillin, P92; actin bi 63.8 2.7 9.4E-05 22.9 1.2 19 49-67 1-19 (37)
2 2nz0_B Potassium voltage-gated 60.9 9.3 0.00032 25.8 3.7 60 27-91 32-92 (140)
3 1s1g_A Potassium voltage-gated 57.1 7.3 0.00025 25.7 2.6 60 27-91 10-70 (124)
4 1y74_B MLIN-2/CASK, peripheral 56.5 3.2 0.00011 23.3 0.6 20 49-68 26-49 (50)
5 1nn7_A Potassium channel KV4.2 50.4 3.8 0.00013 26.2 0.3 55 32-91 2-57 (105)
6 3drz_A BTB/POZ domain-containi 49.6 30 0.001 21.7 4.5 58 29-91 5-67 (107)
7 2al3_A TUG long isoform; TUG U 47.7 24 0.00083 22.5 3.8 36 40-77 18-53 (90)
8 2vpk_A Myoneurin; transcriptio 46.2 22 0.00074 21.7 3.4 48 32-90 25-77 (116)
9 1r29_A B-cell lymphoma 6 prote 43.8 15 0.00051 22.9 2.3 51 32-90 32-86 (127)
10 2xko_C PIPX, global nitrogen r 40.6 2.9 9.9E-05 27.2 -1.5 13 49-61 5-17 (89)
11 2vkp_A BTB/POZ domain-containi 39.5 25 0.00086 21.0 2.8 54 32-90 11-68 (109)
12 1yu8_X Villin; alpha helix, 3- 37.0 11 0.00036 23.1 0.8 20 49-68 31-50 (67)
13 1qzp_A Dematin; villin headpie 35.0 9.4 0.00032 23.2 0.3 20 49-68 32-51 (68)
14 1zo0_A ODC-AZ, ornithine decar 34.5 51 0.0018 22.2 4.0 39 30-71 36-78 (126)
15 2k6m_S Supervillin; SVHP, HP, 34.3 12 0.0004 22.8 0.6 20 49-68 31-50 (67)
16 1ujs_A Actin-binding LIM prote 32.7 15 0.0005 23.6 1.0 20 49-68 46-65 (88)
17 3ga1_A Nucleus accumbens-assoc 31.8 47 0.0016 20.6 3.3 48 32-90 36-87 (129)
18 1y6i_A Mg-chelatase cofactor G 30.4 3.8 0.00013 30.5 -2.5 31 24-57 199-229 (233)
19 2if5_A Zinc finger and BTB dom 28.9 62 0.0021 19.6 3.5 52 32-90 28-82 (120)
20 3pmi_A PWWP domain-containing 28.3 17 0.00059 25.0 0.8 29 40-68 47-78 (134)
21 3n5b_B ASR0485 protein; PII, P 27.9 6.4 0.00022 26.5 -1.5 12 50-61 29-40 (112)
22 2kl4_A BH2032 protein; NB7804A 27.8 70 0.0024 20.2 3.7 25 58-82 72-99 (118)
23 1z3x_A Putative cytidyltransfe 27.0 2.5 8.6E-05 31.6 -4.0 30 24-56 207-236 (238)
24 1vd2_A Protein kinase C, IOTA 26.3 1.2E+02 0.0042 18.9 4.6 28 40-71 16-43 (89)
25 1wy3_A Villin; structural prot 25.9 25 0.00086 18.8 1.0 17 51-67 1-17 (35)
26 3qli_A Coenzyme A transferase; 24.4 38 0.0013 27.2 2.2 43 26-69 403-454 (455)
27 3kvt_A Potassium channel prote 24.3 16 0.00056 23.7 0.0 57 29-91 4-63 (115)
28 3b84_A Zinc finger and BTB dom 24.1 77 0.0026 19.4 3.3 48 32-90 27-77 (119)
29 2ksn_A Ubiquitin domain-contai 23.9 26 0.00089 24.2 1.0 30 25-55 86-115 (137)
30 2ns5_A Partitioning-defective 23.3 1.1E+02 0.0039 19.1 3.9 33 31-67 4-36 (85)
31 3ohu_A Transcription regulator 22.3 59 0.002 19.9 2.4 50 32-90 35-88 (125)
32 2lmc_A Bacterial RNA polymeras 22.1 61 0.0021 20.6 2.4 36 29-69 34-69 (84)
33 1buo_A POZ domain, protein (pr 22.1 97 0.0033 18.9 3.4 47 32-90 31-80 (121)
No 1
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=63.78 E-value=2.7 Score=22.93 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=17.2
Q ss_pred CCCCchhHHHhhhhhHHhc
Q 042279 49 SYPKHPSFQKLLSPAEEEF 67 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEf 67 (92)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 2
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=60.85 E-value=9.3 Score=25.83 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=44.4
Q ss_pred CCCceEEEeecCCCceEEEEecCCC-CchhHHHhhhhhHHhcCCccCCCceeeeCCHHHHHHHHhc
Q 042279 27 VPKGHFAVYVGETERSRFVVPVSYP-KHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCR 91 (92)
Q Consensus 27 vpkG~~aVyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 91 (92)
.....+.+-||. +||.+..+-| ++|. .+|..++...-++.++|.+-|-.+...|.+||+-
T Consensus 32 ~~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnf 92 (140)
T 2nz0_B 32 RQDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNF 92 (140)
T ss_dssp TCCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHH
T ss_pred CCCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHH
Confidence 356789999996 9999988765 3342 2454455555565566999999999999999874
No 3
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=57.10 E-value=7.3 Score=25.74 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=43.2
Q ss_pred CCCceEEEeecCCCceEEEEecCCCC-chhHHHhhhhhHHhcCCccCCCceeeeCCHHHHHHHHhc
Q 042279 27 VPKGHFAVYVGETERSRFVVPVSYPK-HPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCR 91 (92)
Q Consensus 27 vpkG~~aVyVG~~~~~RfvVp~~~L~-hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 91 (92)
.....+.+-||. +||.+..+-|. +|. .+|..++...-++.++|.+-|-.+...|..||+-
T Consensus 10 ~~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnf 70 (124)
T 1s1g_A 10 RQDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNF 70 (124)
T ss_dssp --CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHH
T ss_pred CCCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHH
Confidence 356788999996 99999987663 332 3444455444455556999999999999999874
No 4
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=56.50 E-value=3.2 Score=23.29 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=15.3
Q ss_pred CCCCchhHHHhhh----hhHHhcC
Q 042279 49 SYPKHPSFQKLLS----PAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~----~aeeEfG 68 (92)
..|+.|.||+||+ -|.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 4678999999997 3566664
No 5
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=50.36 E-value=3.8 Score=26.25 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=36.4
Q ss_pred EEEeecCCCceEEEEecCCC-CchhHHHhhhhhHHhcCCccCCCceeeeCCHHHHHHHHhc
Q 042279 32 FAVYVGETERSRFVVPVSYP-KHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCR 91 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 91 (92)
+.+-||. +||.+..+-| ++|. .+|..++...-++.++|.+-|-.+...|.+||+-
T Consensus 2 V~LNVGG---~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnf 57 (105)
T 1nn7_A 2 IVLNVSG---TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNF 57 (105)
T ss_dssp EEEEETT---EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHH
Confidence 4566885 8888887655 2332 2343344443444455899999999999999864
No 6
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=49.57 E-value=30 Score=21.67 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=40.9
Q ss_pred CceEEEeecCCCceEEEEecCCCC-ch--hHHHhhhhhHHhcC--CccCCCceeeeCCHHHHHHHHhc
Q 042279 29 KGHFAVYVGETERSRFVVPVSYPK-HP--SFQKLLSPAEEEFG--FHHPMGGLTIPCSEELFMDLTCR 91 (92)
Q Consensus 29 kG~~aVyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG--~~~~~G~L~IPC~~~~F~~vl~~ 91 (92)
...+.+-||. ++|.+..+-|. +| .|..+.... .++. .+ ++|.+-|-.+...|..||..
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d-~~~~~fiDRdp~~F~~IL~~ 67 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKD-ETGAYLIDRDPTYFGPVLNY 67 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBC-TTSCEEECSCHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCC-CCceEEecCChHHHHHHHHH
Confidence 4567888996 89999987764 44 466664321 2332 23 34899999999999999864
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=47.67 E-value=24 Score=22.55 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=27.9
Q ss_pred CceEEEEecCCCCchhHHHhhhhhHHhcCCccCCCcee
Q 042279 40 ERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLT 77 (92)
Q Consensus 40 ~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~ 77 (92)
..+|+.|.+ -..-.+.++|++|=+.||++.+...|.
T Consensus 18 n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~~~~~Lk 53 (90)
T 2al3_A 18 NGRRHTVKV--TPSTVLLQVLEDTCRRQDFNPSEYDLK 53 (90)
T ss_dssp TSCEEEECC--CTTSBHHHHHHHHHHHTTCCGGGCEEE
T ss_pred CCcEEEEEE--CCCCCHHHHHHHHHHHhCCChhhCeEE
Confidence 578999988 344468899999999999987655453
No 8
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=46.15 E-value=22 Score=21.73 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=35.8
Q ss_pred EEEeecCCCceEEEEecCCC--CchhHHHhhhhhHHhcCCccCCCceeee---CCHHHHHHHHh
Q 042279 32 FAVYVGETERSRFVVPVSYP--KHPSFQKLLSPAEEEFGFHHPMGGLTIP---CSEELFMDLTC 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP---C~~~~F~~vl~ 90 (92)
+.+.||+ ++|-+.-..| ..|.|++++... . + +.+.|+ .+.+.|+.++.
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~ 77 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLE 77 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHH
Confidence 4566775 6788877776 578999998765 2 2 578888 78899998875
No 9
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=43.76 E-value=15 Score=22.89 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=38.1
Q ss_pred EEEeecCCCceEEEEecCCC--CchhHHHhhhhhHHhcCCccCCCceee-e-CCHHHHHHHHh
Q 042279 32 FAVYVGETERSRFVVPVSYP--KHPSFQKLLSPAEEEFGFHHPMGGLTI-P-CSEELFMDLTC 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~I-P-C~~~~F~~vl~ 90 (92)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .. ..+.| + .+.+.|+.++.
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~ 86 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLD 86 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHH
Confidence 4566775 6788877777 689999999876555 23 68999 4 68889998875
No 10
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=40.56 E-value=2.9 Score=27.16 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=9.8
Q ss_pred CCCCchhHHHhhh
Q 042279 49 SYPKHPSFQKLLS 61 (92)
Q Consensus 49 ~~L~hP~F~~LL~ 61 (92)
.|||||.|--|-.
T Consensus 5 ~YLNHPtFGlLy~ 17 (89)
T 2xko_C 5 NYLNHPTFGLLYQ 17 (89)
T ss_dssp CEEEETTTEEEEE
T ss_pred ccccCCccchhhe
Confidence 5999999965543
No 11
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=39.49 E-value=25 Score=20.99 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=36.2
Q ss_pred EEEeecC-CCceEEEEecCCC--CchhHHHhhhhhHHhcCCccCCCceeee-CCHHHHHHHHh
Q 042279 32 FAVYVGE-TERSRFVVPVSYP--KHPSFQKLLSPAEEEFGFHHPMGGLTIP-CSEELFMDLTC 90 (92)
Q Consensus 32 ~aVyVG~-~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~ 90 (92)
+.+.||+ ++.++|-+.-..| ..|.|++++...-.|-. ..+.|| .+.+.|+.++.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-----~~i~l~~~~~~~f~~~l~ 68 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-----SEIHIPDVEPAAFLILLK 68 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-----CEEEETTSCHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-----CeEEeCCCCHHHHHHHHH
Confidence 4566664 2458898888887 68999999976433322 468887 68889998875
No 12
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=36.97 E-value=11 Score=23.05 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=18.5
Q ss_pred CCCCchhHHHhhhhhHHhcC
Q 042279 49 SYPKHPSFQKLLSPAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEfG 68 (92)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 13
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=35.04 E-value=9.4 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=18.4
Q ss_pred CCCCchhHHHhhhhhHHhcC
Q 042279 49 SYPKHPSFQKLLSPAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEfG 68 (92)
.||+.-.|++++.++.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 14
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=34.48 E-value=51 Score=22.22 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=27.2
Q ss_pred ceEEEeecCCCceEEE-EecCCC---CchhHHHhhhhhHHhcCCcc
Q 042279 30 GHFAVYVGETERSRFV-VPVSYP---KHPSFQKLLSPAEEEFGFHH 71 (92)
Q Consensus 30 G~~aVyVG~~~~~Rfv-Vp~~~L---~hP~F~~LL~~aeeEfG~~~ 71 (92)
-+-+|..|. .=|+ ||..-+ +--.|.+||+-|||+.+.++
T Consensus 36 ~W~~Vl~~~---~Lyv~iP~~~~~~gsKe~fv~LLEfAEe~L~~~~ 78 (126)
T 1zo0_A 36 TWRAVWNGG---GLYIELPAGPLPEGSKDSFAALLEFAEEQLRADH 78 (126)
T ss_dssp EEEEEEETT---EEEEECSSCCCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred eEEEEEeCC---eEEEEcCCccccccchHHHHHHHHHHHHhcCCCE
Confidence 445555553 5555 665443 56679999999999998764
No 15
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=34.27 E-value=12 Score=22.79 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=18.7
Q ss_pred CCCCchhHHHhhhhhHHhcC
Q 042279 49 SYPKHPSFQKLLSPAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEfG 68 (92)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999984
No 16
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=32.72 E-value=15 Score=23.56 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=18.6
Q ss_pred CCCCchhHHHhhhhhHHhcC
Q 042279 49 SYPKHPSFQKLLSPAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEfG 68 (92)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 17
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=31.76 E-value=47 Score=20.65 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=35.8
Q ss_pred EEEeecCCCceEEEEecCCCC--chhHHHhhhhhHHhcCCccCCCceeee--CCHHHHHHHHh
Q 042279 32 FAVYVGETERSRFVVPVSYPK--HPSFQKLLSPAEEEFGFHHPMGGLTIP--CSEELFMDLTC 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~ 90 (92)
+.+.||+ ++|-+.-..|. .|.|++++... .. ..+.|| .+.+.|+.++.
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~ 87 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILS 87 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHH
Confidence 5666775 67777766654 68899988765 23 689997 88999998875
No 18
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=30.41 E-value=3.8 Score=30.55 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=20.2
Q ss_pred ccCCCCceEEEeecCCCceEEEEecCCCCchhHH
Q 042279 24 ASTVPKGHFAVYVGETERSRFVVPVSYPKHPSFQ 57 (92)
Q Consensus 24 ~~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~ 57 (92)
+.++|+||+|..-.- ..-| +=-+.|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~l-rG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQL-RGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCT-TCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCcccc-chHH--HHHHHHCCcccc
Confidence 357899999985421 1112 556778888874
No 19
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=28.92 E-value=62 Score=19.62 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=35.1
Q ss_pred EEEeecCCCceEEEEecCCC--CchhHHHhhhhhHHhcCCccCCCceeee-CCHHHHHHHHh
Q 042279 32 FAVYVGETERSRFVVPVSYP--KHPSFQKLLSPAEEEFGFHHPMGGLTIP-CSEELFMDLTC 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~ 90 (92)
+.+.||+ ++|-+.-..| ..|.|++++...-.| ... ..+.++ .+.+.|+.++.
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~ll~ 82 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVV---DQQ-NVYEIDFVSAEALTALMD 82 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCccc---cCC-ceEEeCCCCHHHHHHHHH
Confidence 4566775 7788777777 479999998754333 222 578888 58889998875
No 20
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=28.27 E-value=17 Score=25.04 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=25.7
Q ss_pred CceEEEEecCCCCch---hHHHhhhhhHHhcC
Q 042279 40 ERSRFVVPVSYPKHP---SFQKLLSPAEEEFG 68 (92)
Q Consensus 40 ~~~RfvVp~~~L~hP---~F~~LL~~aeeEfG 68 (92)
+++=|-||+.-|+|= .-++|+++|.|.||
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 678899999998885 48999999999998
No 21
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=27.93 E-value=6.4 Score=26.49 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=9.5
Q ss_pred CCCchhHHHhhh
Q 042279 50 YPKHPSFQKLLS 61 (92)
Q Consensus 50 ~L~hP~F~~LL~ 61 (92)
|||||.|--|-.
T Consensus 29 YLNHPTFGLLyr 40 (112)
T 3n5b_B 29 YINHPTWGLLYR 40 (112)
T ss_dssp EEEETTTEEEEE
T ss_pred hccCCccchhee
Confidence 999999966543
No 22
>2kl4_A BH2032 protein; NB7804A, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; NMR {Bacillus halodurans}
Probab=27.84 E-value=70 Score=20.15 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=15.2
Q ss_pred HhhhhhHHhc---CCccCCCceeeeCCH
Q 042279 58 KLLSPAEEEF---GFHHPMGGLTIPCSE 82 (92)
Q Consensus 58 ~LL~~aeeEf---G~~~~~G~L~IPC~~ 82 (92)
.+++..++++ ||....|.|++|-+.
T Consensus 72 ~~i~~f~~~l~~~~~~~~k~~irf~~~~ 99 (118)
T 2kl4_A 72 IGISQFADAIAQAGYSATKGLFRIPWND 99 (118)
T ss_dssp HHHHTTHHHHHHHTCEECSSCEEEETTS
T ss_pred HHHHHHHHHHHhcCCccCCcEEEecCCC
Confidence 4455555554 664444789998743
No 23
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=27.02 E-value=2.5 Score=31.62 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=19.5
Q ss_pred ccCCCCceEEEeecCCCceEEEEecCCCCchhH
Q 042279 24 ASTVPKGHFAVYVGETERSRFVVPVSYPKHPSF 56 (92)
Q Consensus 24 ~~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F 56 (92)
+.++|+||+|..-. -+=.-+=-+.|+||.|
T Consensus 207 sl~AP~GHLP~~~~---lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQ---LRGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCC---TTCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCcc---cccHHHHHHHHcCccc
Confidence 35789999998542 2222344567888876
No 24
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=26.32 E-value=1.2e+02 Score=18.91 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=23.6
Q ss_pred CceEEEEecCCCCchhHHHhhhhhHHhcCCcc
Q 042279 40 ERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHH 71 (92)
Q Consensus 40 ~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~ 71 (92)
+-.|+-||. ...|++|.++-.+-|++..
T Consensus 16 di~~~~v~~----~i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 16 DIMITHFEP----SISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp CEEEEEECT----TCCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCC----CCCHHHHHHHHHHHhCCCC
Confidence 688888886 4689999999999999863
No 25
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=25.90 E-value=25 Score=18.76 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=14.0
Q ss_pred CCchhHHHhhhhhHHhc
Q 042279 51 PKHPSFQKLLSPAEEEF 67 (92)
Q Consensus 51 L~hP~F~~LL~~aeeEf 67 (92)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56677899999998887
No 26
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=24.39 E-value=38 Score=27.16 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=30.0
Q ss_pred CCCCceEEEeecC---------CCceEEEEecCCCCchhHHHhhhhhHHhcCC
Q 042279 26 TVPKGHFAVYVGE---------TERSRFVVPVSYPKHPSFQKLLSPAEEEFGF 69 (92)
Q Consensus 26 ~vpkG~~aVyVG~---------~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~ 69 (92)
..|++++-+.|-| .-++|-.-=++ +-||.||+.|.+++++.|+
T Consensus 403 tt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 403 TTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred ccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 4577777777654 22444444445 8999999999998888764
No 27
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=24.31 E-value=16 Score=23.66 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=37.5
Q ss_pred CceEEEeecCCCceEEEEecCCCC-ch--hHHHhhhhhHHhcCCccCCCceeeeCCHHHHHHHHhc
Q 042279 29 KGHFAVYVGETERSRFVVPVSYPK-HP--SFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCR 91 (92)
Q Consensus 29 kG~~aVyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 91 (92)
...+.+-||. +||....+-|. +| .+..|.. .-..++.+.|..-|--+...|..||+-
T Consensus 4 ~~~V~LNVGG---~~f~T~~~TL~~~P~s~L~~l~~---~~~~~~~~~g~~FiDRdp~~F~~ILny 63 (115)
T 3kvt_A 4 ENRVIINVGG---IRHETYKATLKKIPATRLSRLTE---GMLNYDPVLNEYFFDRHPGVFAQIINY 63 (115)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTTSCSSTTTTCCT---TSTTEETTTTEEEECSCTTTHHHHHHH
T ss_pred CCEEEEEECC---EEEEecHHHHhcCCCccHHHHhc---CCCCCCCCCCcEEEecChHHHHHHHHH
Confidence 3467888996 89999876554 23 2333332 223345455889999999999999864
No 28
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=24.07 E-value=77 Score=19.36 Aligned_cols=48 Identities=25% Similarity=0.199 Sum_probs=34.4
Q ss_pred EEEeecCCCceEEEEecCCC--CchhHHHhhhhhHHhcCCccCCCceeee-CCHHHHHHHHh
Q 042279 32 FAVYVGETERSRFVVPVSYP--KHPSFQKLLSPAEEEFGFHHPMGGLTIP-CSEELFMDLTC 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~ 90 (92)
+.+.||+ ++|-+.-..| ..|.|++++.... + +.|.|| .+.+.|+.++.
T Consensus 27 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~-------~-~~i~l~~~~~~~f~~ll~ 77 (119)
T 3b84_A 27 ATLDVGG---LVFKAHWSVLACCSHFFQSLYGDGS-------G-GSVVLPAGFAEIFGLLLD 77 (119)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTTT-------C-CCEEECGGGHHHHHHHHH
T ss_pred eEEEECC---EEEEeeHHHHhhcCHHHHHHHCCCC-------C-CeEEeCCCCHHHHHHHHH
Confidence 4556775 6787776666 4789999987532 2 579998 56788888875
No 29
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=23.94 E-value=26 Score=24.22 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=26.6
Q ss_pred cCCCCceEEEeecCCCceEEEEecCCCCchh
Q 042279 25 STVPKGHFAVYVGETERSRFVVPVSYPKHPS 55 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~ 55 (92)
..+|.|-+.+...+ ...+|.+|.-+++.|.
T Consensus 86 Itvp~gdL~~cYDe-~G~~Y~LP~yvls~P~ 115 (137)
T 2ksn_A 86 ITLPHGALTECYDE-LGNRYQLPVYCLAPPI 115 (137)
T ss_dssp CBCSSCCSSEEEET-TTEEEECCGGGTCCST
T ss_pred CcccCCcHHHHHhc-cCCccCCCeeEeeCCc
Confidence 67899999996665 8899999999999996
No 30
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=23.26 E-value=1.1e+02 Score=19.14 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=24.5
Q ss_pred eEEEeecCCCceEEEEecCCCCchhHHHhhhhhHHhc
Q 042279 31 HFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEF 67 (92)
Q Consensus 31 ~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEf 67 (92)
-++|.+|. .|++||-.- +.-..+.|.++|-.-|
T Consensus 4 KvtV~fg~---~~vvVPC~d-g~~tV~~L~~~A~~RY 36 (85)
T 2ns5_A 4 KVTVCFGR---TRVDVPCGD-GRMKVFSLIQQAVTRY 36 (85)
T ss_dssp EEEEEETT---EEEEEEESS-SCCCHHHHHHHHHHHH
T ss_pred EEEEEECC---EEEEEECCC-CcccHHHHHHHHHHHH
Confidence 36888996 999999865 3445678888876655
No 31
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=22.30 E-value=59 Score=19.94 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=35.7
Q ss_pred EEEeecCCCceEEEEecCCCC--chhHHHhhhhhHHhcCCccCCCceeee--CCHHHHHHHHh
Q 042279 32 FAVYVGETERSRFVVPVSYPK--HPSFQKLLSPAEEEFGFHHPMGGLTIP--CSEELFMDLTC 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~ 90 (92)
+.+.||+ ++|-+.-..|. .|.|++++.....| . ..+.+| .+.+.|+.++.
T Consensus 35 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~-~~i~l~~~~~~~~f~~~l~ 88 (125)
T 3ohu_A 35 VTLIVER---KEFRAHRAVLAACSEYFWQALVGQTKN-----D-LVVSLPEEVTARGFGPLLQ 88 (125)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHTTCCCS-----S-CEEECCTTCCHHHHHHHHH
T ss_pred eEEEECC---EEEechHHHHHHcCHHHHHHhcCCCCC-----C-cEEEeCCCCCHHHHHHHHH
Confidence 4666775 67777766664 68899998765333 2 578887 78999998875
No 32
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=22.13 E-value=61 Score=20.56 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=20.7
Q ss_pred CceEEEeecCCCceEEEEecCCCCchhHHHhhhhhHHhcCC
Q 042279 29 KGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGF 69 (92)
Q Consensus 29 kG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~ 69 (92)
|-+++=..| .-.-|.||+-- -.+-+-|+.||+||+-
T Consensus 34 KKf~vtveg--~~~s~EVPV~A---~sLdEAlE~AE~eYee 69 (84)
T 2lmc_A 34 KKFWATVES--SEHSFEVPIYA---ETLDEALELAEWQYVP 69 (84)
T ss_dssp SEEEEEEEC--SSCEEEEEECC---SSHHHHHHHHHHTTGG
T ss_pred eEEEEEEec--ccceEEEeeec---ccHHHHHHHHHHHhhh
Confidence 444444445 24556666532 2355677788888863
No 33
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=22.13 E-value=97 Score=18.89 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=33.8
Q ss_pred EEEeecCCCceEEEEecCCC--CchhHHHhhhhhHHhcCCccCCCceeee-CCHHHHHHHHh
Q 042279 32 FAVYVGETERSRFVVPVSYP--KHPSFQKLLSPAEEEFGFHHPMGGLTIP-CSEELFMDLTC 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~ 90 (92)
+.+.||+ ++|-+.-..| +.|.|++++.. .. ..+.|+ .+.+.|+.++.
T Consensus 31 v~l~v~~---~~f~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~ 80 (121)
T 1buo_A 31 VVIMVDS---QEFHAHRTVLACTSKMFEILFHR--------NS-QHYTLDFLSPKTFQQILE 80 (121)
T ss_dssp EEEEESS---CEEEECHHHHHHHCHHHHHHTTS--------CC-SEEEECSSCHHHHHHHHH
T ss_pred EEEEECC---EEEehhHHHHhhcCHHHHHHHcC--------CC-cEEEeCCCCHHHHHHHHH
Confidence 4456675 6777776666 67889998864 12 578888 78889988875
Done!