Query 042279
Match_columns 92
No_of_seqs 114 out of 636
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 07:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042279.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042279hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nn7a_ d.42.1.2 (A:) Potassiu 71.7 0.38 2.8E-05 29.5 0.0 55 32-91 2-57 (105)
2 d1unda_ a.14.1.1 (A:) Advillin 62.5 1.4 0.0001 22.7 1.2 18 50-67 1-18 (36)
3 d3kvta_ d.42.1.2 (A:) akv3.1 v 56.0 1.1 8.3E-05 27.1 0.0 55 31-91 3-60 (103)
4 d2bkfa1 d.15.2.2 (A:1-85) Next 53.1 15 0.0011 21.7 5.1 52 32-86 7-66 (85)
5 d1y6ia2 a.261.1.1 (A:83-233) M 50.5 0.41 3E-05 31.9 -3.0 31 25-58 118-148 (151)
6 d1whza_ d.50.3.2 (A:) Hypothet 43.0 17 0.0013 20.1 4.0 51 12-63 8-60 (70)
7 d1tjya_ c.93.1.1 (A:) AI-2 rec 40.3 14 0.001 23.4 3.7 31 40-70 2-35 (316)
8 d1z3xa2 a.261.1.1 (A:88-235) G 40.3 0.37 2.7E-05 32.0 -4.5 29 25-56 118-146 (148)
9 d1t1da_ d.42.1.2 (A:) Shaker p 40.0 2.9 0.00021 25.2 0.0 54 32-91 3-59 (100)
10 d1yu5x1 a.14.1.1 (X:10-76) Vil 38.9 4.4 0.00032 23.4 0.8 19 49-67 31-49 (67)
11 d1y74b1 a.194.1.1 (B:83-132) P 38.3 4.2 0.00031 22.3 0.6 20 49-68 26-49 (50)
12 d1qzpa_ a.14.1.1 (A:) Dematin 33.7 4.8 0.00035 23.3 0.3 19 49-67 32-50 (68)
13 d1ip9a_ d.15.2.2 (A:) Bud emer 33.0 39 0.0029 19.1 4.6 48 32-84 15-70 (85)
14 d1ujsa_ a.14.1.1 (A:) Actin-bi 32.4 7.1 0.00052 23.6 1.0 20 49-68 46-65 (88)
15 d1qusa_ d.2.1.6 (A:) 36 kDa so 31.2 13 0.00093 26.8 2.4 25 48-72 13-37 (322)
16 d1yu8x1 a.14.1.1 (X:42-76) Vil 30.3 8.6 0.00063 19.4 0.9 17 51-67 1-17 (35)
17 d1b0aa2 c.58.1.2 (A:2-122) Tet 29.3 54 0.0039 19.6 5.4 53 26-91 30-84 (121)
18 d2r85a1 c.30.1.8 (A:1-99) 5-fo 28.0 0.43 3.1E-05 30.0 -5.5 24 25-48 65-88 (99)
19 d2c35b2 d.230.1.1 (B:1-77) N-t 27.8 35 0.0025 18.7 3.6 37 42-78 9-46 (77)
20 d1guda_ c.93.1.1 (A:) D-allose 25.3 31 0.0023 21.7 3.3 27 44-70 4-33 (288)
21 d1dkgd1 c.55.1.1 (D:3-185) Hea 22.9 18 0.0013 22.5 1.7 39 48-86 110-148 (183)
22 d2dria_ c.93.1.1 (A:) D-ribose 22.4 28 0.002 21.5 2.6 25 44-70 6-33 (271)
23 d2pbza1 c.30.1.8 (A:4-99) 5-fo 21.9 0.66 4.8E-05 29.0 -5.5 23 25-47 60-82 (96)
24 d1t2da2 d.162.1.1 (A:151-315) 21.0 55 0.004 19.9 3.8 32 32-66 126-157 (165)
No 1
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=71.73 E-value=0.38 Score=29.54 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=38.9
Q ss_pred EEEeecCCCceEEEEecCCC-CchhHHHhhhhhHHhcCCccCCCceeeeCCHHHHHHHHhc
Q 042279 32 FAVYVGETERSRFVVPVSYP-KHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCR 91 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 91 (92)
+.+-||. ++|.+..+-| ++|.- +|........++.++|.+-|--|...|++||.-
T Consensus 2 I~LNVGG---~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~y 57 (105)
T d1nn7a_ 2 IVLNVSG---TRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNF 57 (105)
T ss_dssp EEEEETT---EEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHH
Confidence 5677886 9999998876 45542 233333334455556899999999999999874
No 2
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.49 E-value=1.4 Score=22.75 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=16.8
Q ss_pred CCCchhHHHhhhhhHHhc
Q 042279 50 YPKHPSFQKLLSPAEEEF 67 (92)
Q Consensus 50 ~L~hP~F~~LL~~aeeEf 67 (92)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 799999999999999998
No 3
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=56.01 E-value=1.1 Score=27.08 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=39.1
Q ss_pred eEEEeecCCCceEEEEecCCCCc-h--hHHHhhhhhHHhcCCccCCCceeeeCCHHHHHHHHhc
Q 042279 31 HFAVYVGETERSRFVVPVSYPKH-P--SFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCR 91 (92)
Q Consensus 31 ~~aVyVG~~~~~RfvVp~~~L~h-P--~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 91 (92)
.+.+=||. ++|.+..+-|.. | .|..+ ++....++.++|.+-|--+...|++||+-
T Consensus 3 rI~LNVGG---~~F~t~~~tL~~~~~s~l~~~---~~~~~~~~~~~~~~fiDRdp~~F~~IL~y 60 (103)
T d3kvta_ 3 RVIINVGG---IRHETYKATLKKIPATRLSRL---TEGMLNYDPVLNEYFFDRHPGVFAQIINY 60 (103)
T ss_dssp EEEEEETT---EEEEEEHHHHTTSCSSTTTTC---CTTSTTEETTTTEEEECSCTTTHHHHHHH
T ss_pred EEEEEECC---EEEEEeHHHHhhCccchhHHH---HcCCCccCCCCCcEEecCCHHHHHHHHHH
Confidence 46677886 999999887763 4 23322 23334455566899999999999999874
No 4
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.10 E-value=15 Score=21.70 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=36.8
Q ss_pred EEEeecCCCceEEEEecCCCCchhHHHhhhhhHHhcCC--------ccCCCceeeeCCHHHHH
Q 042279 32 FAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGF--------HHPMGGLTIPCSEELFM 86 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~--------~~~~G~L~IPC~~~~F~ 86 (92)
+-|..|+ +..||.++.. +++.|.+|..+-+.-||. +.++--++|.|+++.=|
T Consensus 7 vKvtf~~-dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E 66 (85)
T d2bkfa1 7 LNVTFKN-EIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEE 66 (85)
T ss_dssp EEEEETT-EEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHH
T ss_pred EEEEECC-ceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHH
Confidence 3444565 8999998532 477899999999999884 23334588999976543
No 5
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=50.55 E-value=0.41 Score=31.92 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=19.3
Q ss_pred cCCCCceEEEeecCCCceEEEEecCCCCchhHHH
Q 042279 25 STVPKGHFAVYVGETERSRFVVPVSYPKHPSFQK 58 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~ 58 (92)
.++|+||+|+.-.- ..-| +--+.|+||.|.+
T Consensus 118 l~AP~GHLP~~~~l-rG~~--~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 118 LSAPQGHLPLLNQL-RGVR--VAESLYRHPVWSQ 148 (151)
T ss_dssp TTSCTTCCSCCCCT-TCTH--HHHHHHTSTHHHH
T ss_pred CCCCCCCCCccchh-hhHH--HHHHHHcCcchhh
Confidence 56899999985421 1111 3334788888864
No 6
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=42.98 E-value=17 Score=20.14 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=30.4
Q ss_pred HHHHHhhhcCCCccCCCCceEEEeecCCCceEEEEecC--CCCchhHHHhhhhh
Q 042279 12 KQALRRALMVPEASTVPKGHFAVYVGETERSRFVVPVS--YPKHPSFQKLLSPA 63 (92)
Q Consensus 12 k~~l~r~~~~~~~~~vpkG~~aVyVG~~~~~RfvVp~~--~L~hP~F~~LL~~a 63 (92)
|+++|..........=.+|-...|.-. +.++.+||.. =|.-...++.|++|
T Consensus 8 kelik~L~~~Gf~~~rqkGSH~~~~~~-~~~~~~v~~~~kei~~gtl~~Ilkqa 60 (70)
T d1whza_ 8 EEVARKLRRLGFVERMAKGGHRLYTHP-DGRIVVVPFHSGELPKGTFKRILRDA 60 (70)
T ss_dssp HHHHHHHHHTTCEEEEEETTEEEEECT-TSCEEEEECSSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCcEEeccCCceeEEEcC-CCCEEEcCCCCCccCHHHHHHHHHHh
Confidence 444444443332212235666777754 5667777764 36677788888887
No 7
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=40.32 E-value=14 Score=23.42 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=24.9
Q ss_pred CceEEEEecCCCCchhHHHhhh---hhHHhcCCc
Q 042279 40 ERSRFVVPVSYPKHPSFQKLLS---PAEEEFGFH 70 (92)
Q Consensus 40 ~~~RfvVp~~~L~hP~F~~LL~---~aeeEfG~~ 70 (92)
..+|..+=+..+++|.|+...+ ++++++||+
T Consensus 2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~ 35 (316)
T d1tjya_ 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGID 35 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 4678888889999999998855 667788875
No 8
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=40.30 E-value=0.37 Score=31.99 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=18.8
Q ss_pred cCCCCceEEEeecCCCceEEEEecCCCCchhH
Q 042279 25 STVPKGHFAVYVGETERSRFVVPVSYPKHPSF 56 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F 56 (92)
.++|+||+|+. +. .+-..|=-..|+||.|
T Consensus 118 l~AP~GHLP~~-~~--lrg~~~~~~~l~h~a~ 146 (148)
T d1z3xa2 118 LSAPRGHLPLT-NQ--LRGVQVLNALLNHPAW 146 (148)
T ss_dssp TTSCTTCCSCC-CC--TTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcC-Cc--cchHHHHHHHhcCccc
Confidence 56899999974 32 3333444566777765
No 9
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=39.96 E-value=2.9 Score=25.15 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=36.2
Q ss_pred EEEeecCCCceEEEEecCCCCc-h--hHHHhhhhhHHhcCCccCCCceeeeCCHHHHHHHHhc
Q 042279 32 FAVYVGETERSRFVVPVSYPKH-P--SFQKLLSPAEEEFGFHHPMGGLTIPCSEELFMDLTCR 91 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L~h-P--~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~~ 91 (92)
+.+-||. ++|.+..+-|.. | .+..|.. ..-.++.++|.+-|--+...|.+||+-
T Consensus 3 I~LNVGG---~~f~t~~~tL~~~p~s~l~~l~~---~~~~~~~~~g~~FiDRdp~~F~~IL~f 59 (100)
T d1t1da_ 3 VVINVSG---LRFETQLKTLNQFPDTLLGNPQK---RNRYYDPLRNEYFFDRNRPSFDAILYF 59 (100)
T ss_dssp EEEEETT---EEEEEEHHHHHTSTTSTTTCHHH---HGGGEETTTTEEEECSCSTTHHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhhCCCchhHHHHh---CCCcCCCCCCeEEEecCHHHHHHHHHH
Confidence 4567886 999998776644 3 2222221 222345556899999999999999863
No 10
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=38.93 E-value=4.4 Score=23.36 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=18.1
Q ss_pred CCCCchhHHHhhhhhHHhc
Q 042279 49 SYPKHPSFQKLLSPAEEEF 67 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEf 67 (92)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 11
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.32 E-value=4.2 Score=22.31 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=14.7
Q ss_pred CCCCchhHHHhhh----hhHHhcC
Q 042279 49 SYPKHPSFQKLLS----PAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~----~aeeEfG 68 (92)
..|+.|.|++||. -|.+-||
T Consensus 26 ~lL~~PH~~aLL~aHD~VA~k~Y~ 49 (50)
T d1y74b1 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHHHHHHHHHhcc
Confidence 3578899999997 3566665
No 12
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.72 E-value=4.8 Score=23.27 Aligned_cols=19 Identities=21% Similarity=0.383 Sum_probs=18.0
Q ss_pred CCCCchhHHHhhhhhHHhc
Q 042279 49 SYPKHPSFQKLLSPAEEEF 67 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEf 67 (92)
.||+.-.|++++.++.+||
T Consensus 32 ~yLsd~dF~~vFgms~~eF 50 (68)
T d1qzpa_ 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999998
No 13
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.99 E-value=39 Score=19.10 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=33.1
Q ss_pred EEEeecCCCceEEEEecCCCCchhHHHhhhhhHHhcCC-------c-cCCCceeeeCCHHH
Q 042279 32 FAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGF-------H-HPMGGLTIPCSEEL 84 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~-------~-~~~G~L~IPC~~~~ 84 (92)
+-++.++ +..||.||.+ ..|.+|.++-++-|+- . .++..++|-|+.+.
T Consensus 15 VKv~~~~-D~~~~~l~~~----it~~dL~~kI~~rf~~~~~~lkY~Dedgd~v~i~sD~Dl 70 (85)
T d1ip9a_ 15 IKFYYKD-DIFALMLKGD----TTYKELRSKIAPRIDTDNFKLQTKLFDGSGEEIKTDSQV 70 (85)
T ss_dssp EEECBTT-CCEEEEECSC----CCHHHHHHHHHHHHTSSCEEEEECCSSSCCSCCCSHHHH
T ss_pred EEEEECC-cEEEEEeCCC----CCHHHHHHHHHHHhCCCceEEEEEcCCCCEEEEeCHHHH
Confidence 4455576 8999999854 4588888888888862 2 22235778888654
No 14
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.35 E-value=7.1 Score=23.61 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=18.5
Q ss_pred CCCCchhHHHhhhhhHHhcC
Q 042279 49 SYPKHPSFQKLLSPAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEfG 68 (92)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T d1ujsa_ 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 68999999999999999984
No 15
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=31.23 E-value=13 Score=26.79 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=22.2
Q ss_pred cCCCCchhHHHhhhhhHHhcCCccC
Q 042279 48 VSYPKHPSFQKLLSPAEEEFGFHHP 72 (92)
Q Consensus 48 ~~~L~hP~F~~LL~~aeeEfG~~~~ 72 (92)
-+|.+||.+++++++..+++||+.+
T Consensus 13 ~dya~~p~v~~Fi~~la~~~G~s~~ 37 (322)
T d1qusa_ 13 GDFANNPNAQQFIDKMVNKHGFDRQ 37 (322)
T ss_dssp STTTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCcccCHHHHHHHHHHHHHhCCCHH
Confidence 4799999999999999999999853
No 16
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=30.33 E-value=8.6 Score=19.40 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=14.2
Q ss_pred CCchhHHHhhhhhHHhc
Q 042279 51 PKHPSFQKLLSPAEEEF 67 (92)
Q Consensus 51 L~hP~F~~LL~~aeeEf 67 (92)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vfgmsr~eF 17 (35)
T d1yu8x1 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp SCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56678999999999887
No 17
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}
Probab=29.35 E-value=54 Score=19.55 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=36.4
Q ss_pred CCCCceEEEeecCCCceEEEEecCCCCchhHHHhhhhhHHhcCCccCCCceeee--CCHHHHHHHHhc
Q 042279 26 TVPKGHFAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIP--CSEELFMDLTCR 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~~ 91 (92)
..+.+...|+||+ +. ..-.....-.++.++.|+... .+.+| |+.+.+...+..
T Consensus 30 ~~~P~LavI~vg~-d~----------aS~~Yv~~k~k~a~~lGi~~~--~~~l~~~~t~~~l~~~I~~ 84 (121)
T d1b0aa2 30 LRAPGLAVVLVGS-NP----------ASQIYVASKRKACEEVGFVSR--SYDLPETTSEAELLELIDT 84 (121)
T ss_dssp CCCCEEEEEEESC-CH----------HHHHHHHHHHHHHHHHTCEEC--CEEECTTCCHHHHHHHHHH
T ss_pred CCCceEEEEEeCC-Ch----------hHHHHHHHHHHHHHhhcccee--eeeccccccHHHHHHHHHH
Confidence 3355888999998 21 011245677788999999865 57776 777888877654
No 18
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=28.05 E-value=0.43 Score=30.01 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=16.5
Q ss_pred cCCCCceEEEeecCCCceEEEEec
Q 042279 25 STVPKGHFAVYVGETERSRFVVPV 48 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~~~~RfvVp~ 48 (92)
.-+|.|.|++|+|-+.-+.|-||+
T Consensus 65 I~IPhgSfv~Y~G~d~ie~~~VP~ 88 (99)
T d2r85a1 65 VVVPTGSFVAHLGIELVENMKVPY 88 (99)
T ss_dssp EECCCTTHHHHHCHHHHHTCCSCB
T ss_pred EEecCCCEEEEEcHHHHhcCCCCc
Confidence 458999999999962223366663
No 19
>d2c35b2 d.230.1.1 (B:1-77) N-terminal, heterodimerisation domain of RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.76 E-value=35 Score=18.71 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=27.4
Q ss_pred eEEEEecCCCCchhHHHhhhhhHHhc-CCccCCCceee
Q 042279 42 SRFVVPVSYPKHPSFQKLLSPAEEEF-GFHHPMGGLTI 78 (92)
Q Consensus 42 ~RfvVp~~~L~hP~F~~LL~~aeeEf-G~~~~~G~L~I 78 (92)
+...||.++|+.+.-+.+.++-.+.| |-...++++.|
T Consensus 9 d~v~i~P~~~~~~~~~~i~~~L~~~~egk~~~~~G~~i 46 (77)
T d2c35b2 9 HEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVI 46 (77)
T ss_dssp EEEEECGGGCCSCHHHHHHHHHHHHHTTCEETTTEEEE
T ss_pred EEEEECHHHhCccHHHHHHHHHHHHhCCEEeCCCCEEE
Confidence 56789999999999999999988877 33333345544
No 20
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=25.26 E-value=31 Score=21.74 Aligned_cols=27 Identities=11% Similarity=0.284 Sum_probs=20.4
Q ss_pred EEEecCCCCchhHHHhhh---hhHHhcCCc
Q 042279 44 FVVPVSYPKHPSFQKLLS---PAEEEFGFH 70 (92)
Q Consensus 44 fvVp~~~L~hP~F~~LL~---~aeeEfG~~ 70 (92)
|-|=+..+++|.|..+.+ ++.+++||+
T Consensus 4 ~a~i~~~~~npff~~i~~g~~~~a~~~g~~ 33 (288)
T d1guda_ 4 YAVVLKTLSNPFWVDMKKGIEDEAKTLGVS 33 (288)
T ss_dssp EEEEESCSSSHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 556667899999999876 445678875
No 21
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Probab=22.91 E-value=18 Score=22.50 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=28.5
Q ss_pred cCCCCchhHHHhhhhhHHhcCCccCCCceeeeCCHHHHH
Q 042279 48 VSYPKHPSFQKLLSPAEEEFGFHHPMGGLTIPCSEELFM 86 (92)
Q Consensus 48 ~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~ 86 (92)
..-|-.-.++.|.+.|++.+|-.-.+-+|++|+.....+
T Consensus 110 ~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~ 148 (183)
T d1dkgd1 110 PPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQ 148 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHH
Confidence 344555668888888999889776656799998765544
No 22
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=22.36 E-value=28 Score=21.53 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=18.0
Q ss_pred EEEecCCCCchhHHHhhhh---hHHhcCCc
Q 042279 44 FVVPVSYPKHPSFQKLLSP---AEEEFGFH 70 (92)
Q Consensus 44 fvVp~~~L~hP~F~~LL~~---aeeEfG~~ 70 (92)
++|| .+++|.|.++++- +.+++||+
T Consensus 6 vvvp--~~~~~f~~~~~~gi~~~a~~~g~~ 33 (271)
T d2dria_ 6 LVVS--TLNNPFFVSLKDGAQKEADKLGYN 33 (271)
T ss_dssp EEES--CSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred EEeC--CCCCHHHHHHHHHHHHHHHHcCCE
Confidence 3455 6889999888764 46678885
No 23
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=21.90 E-value=0.66 Score=28.97 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=15.7
Q ss_pred cCCCCceEEEeecCCCceEEEEe
Q 042279 25 STVPKGHFAVYVGETERSRFVVP 47 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~~~~RfvVp 47 (92)
.-+|.|.|++|+|-+.-+.+.||
T Consensus 60 I~IPhgSfv~Y~G~~~ie~~~VP 82 (96)
T d2pbza1 60 IVVPHGSFVAYLGIEAIEKAKAR 82 (96)
T ss_dssp BCCCBTTHHHHSCHHHHHTCCSC
T ss_pred EEEcCCCEEEEecHHHHhhCCCC
Confidence 45899999999996222334444
No 24
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=20.98 E-value=55 Score=19.90 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=21.3
Q ss_pred EEEeecCCCceEEEEecCCCCchhHHHhhhhhHHh
Q 042279 32 FAVYVGETERSRFVVPVSYPKHPSFQKLLSPAEEE 66 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeE 66 (92)
+||-+|. +.-.-++++. |+ +.=+++|++|++|
T Consensus 126 ~Pv~lg~-~Gv~~i~~l~-L~-~~E~~~L~~s~~~ 157 (165)
T d1t2da2 126 TPVVLGA-NGVEQVIELQ-LN-SEEKAKFDEAIAE 157 (165)
T ss_dssp EEEEEET-TEEEEECCCC-CC-HHHHHHHHHHHHH
T ss_pred eeEEEcC-CceEEEeCCC-CC-HHHHHHHHHHHHH
Confidence 3455566 5555567776 65 6667888888776
Done!