BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042280
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AJW|A Chain A, Discovery And Optimization Of New Benzimidazole- And
Benzoxazole- Pyrimidone Selective Pi3kbeta Inhibitors
For The Treatment Of Phosphatase And Tensin Homologue
(Pten)-Deficient Cancers
pdb|4AJW|B Chain B, Discovery And Optimization Of New Benzimidazole- And
Benzoxazole- Pyrimidone Selective Pi3kbeta Inhibitors
For The Treatment Of Phosphatase And Tensin Homologue
(Pten)-Deficient Cancers
Length = 934
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 210 CKISWSDLVGFDDGDALKTFLNGFKINVTRSDGDDDLLMLNGVVISSPNLYYSDWLVVH 268
C I+W++L+ FD D LKT + + D +LL G V +PN + LV++
Sbjct: 307 CPIAWANLMLFDYKDQLKTGERCLYMWPSVPDEKGELLNPAGTVRGNPNTESAAALVIY 365
>pdb|2WXF|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Pik-39.
pdb|2WXG|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Sw13.
pdb|2WXH|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Sw14.
pdb|2WXI|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-kinase
P110delta In Complex With Sw30.
pdb|2WXJ|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ink654.
pdb|2WXK|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ink666.
pdb|2WXL|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Zstk474.
pdb|2WXM|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Dl06.
pdb|2WXN|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-kinase
P110delta In Complex With Dl07.
pdb|2WXO|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With As5.
pdb|2WXP|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Gdc-0941.
pdb|2WXQ|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With As15.
pdb|2WXR|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta.
pdb|2X38|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ic87114
Length = 940
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 210 CKISWSDLVGFDDGDALKTFLNGFKINVTRSDGDDDLLMLNGVVISSPNLYYSDWLVVH 268
C I+W++L+ FD D LKT + + D +LL G V +PN + LV++
Sbjct: 312 CPIAWANLMLFDYKDQLKTGERCLYMWPSVPDEKGELLNPAGTVRGNPNTESAAALVIY 370
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 119 SDSPFKTDQDAISPCGFSFNDSVNAFEEASGVLRSKGYSLMGSFLELQLLGFSDRSGIAE 178
+ PFKT +P F + +A E SG L + SLM +++LLG R G+ E
Sbjct: 275 TQQPFKT-----APNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGE 329
Query: 179 L 179
L
Sbjct: 330 L 330
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 89 GVNLTHKPIYNDGLLVIYGINEFFNPGYGVSDSPFKTDQDAIS--PCGFSFNDSVNAFEE 146
G +T P + G IY I + N S + ++ AI P GF+FND+V F+
Sbjct: 47 GDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFNFNDNVTPFKY 106
Query: 147 ASGVLRSKGYSLMG 160
A+G + ++G
Sbjct: 107 AAGAKAGERIKVIG 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,746,019
Number of Sequences: 62578
Number of extensions: 355453
Number of successful extensions: 944
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 4
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)