BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042280
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FGW0|FLA20_ARATH Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis
thaliana GN=FLA20 PE=3 SV=1
Length = 424
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 158/315 (50%), Gaps = 43/315 (13%)
Query: 1 MSLTLQLVSKTLTRAHHSPFLTIFSPSDSAFVSSGQPSLSLLEFHFSPLSLPLYSLKKLP 60
M LTL+L ++ L LT+F+PSD +F GQPSL +++ SP LP +L+ LP
Sbjct: 84 MGLTLKLANQDLNLEDWQE-LTLFAPSDQSFSKFGQPSLLDMKYQLSPTRLPGETLRNLP 142
Query: 61 CNSKIPTLSPSHSLVITSFPS-DCNVSLKGVNLTHKPIYNDGLLVIYGINEFFN------ 113
+KIPTL ++SL +T+ S+ V + P+++DG +VIYG +EFF
Sbjct: 143 NGAKIPTLRSNYSLTVTNSSRFGGKTSINNVVVQDSPVFDDGYVVIYGSDEFFTSPTKIS 202
Query: 114 ---------------------PGYGVSDSP---FKTDQDAISPCGFSFNDSVNAFEEASG 149
P P +D P + N FE AS
Sbjct: 203 DDSSSSSSIPSTTSSTGSIPIPSSATQTPPSPNIASDSTRNLPNRSKPVNRFNIFESASR 262
Query: 150 VLRSKGYSLMGSFLELQLLGFSDRSGI-AELTVFAPFDGVMMDYVGNVSEYSSLLLRHTV 208
+L S+G+ ++ +FL LQL + SG ++TVFAP D + + S+Y ++ H V
Sbjct: 263 LLMSRGFVIIATFLALQLE--DNTSGNDTKITVFAPIDEAIPNPTTKFSDYVTIFRGHVV 320
Query: 209 PCKISWSDLVGF-DDGDALKTFLNGFKINVTRSDGDDDLLMLNGVVISSPNLYYSDWLVV 267
+ W DL F +G L+T L G++I ++ S D+L+LNGV + P+LY +DW+ V
Sbjct: 321 SQLLLWKDLQKFAKEGSILQTVLKGYEIEISLSG---DILLLNGVPLIYPDLYVNDWIAV 377
Query: 268 HGIHEVLAVPATTKE 282
HG ++++ TKE
Sbjct: 378 HGFNQMIV----TKE 388
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 140 SVNAFEEASGVLRSKGYSLMGSFLEL--QLLGFSDRSGIAELTVFAPFDGVMMDYVGNVS 197
S+ + A VL GY MG L+L Q L D ELT+FAP D +
Sbjct: 65 SMTSVSSAVEVLSDSGYLSMGLTLKLANQDLNLEDWQ---ELTLFAPSDQSFSKF----G 117
Query: 198 EYSSLLLRHTV-PCKISWSDLVGFDDGDALKTFLNGFKINVTRSDGDDDLLMLNGVVISS 256
+ S L +++ + P ++ L +G + T + + + VT S +N VV+
Sbjct: 118 QPSLLDMKYQLSPTRLPGETLRNLPNGAKIPTLRSNYSLTVTNSSRFGGKTSINNVVVQD 177
Query: 257 PNLYYSDWLVVHGIHEVLAVPA 278
++ ++V++G E P
Sbjct: 178 SPVFDDGYVVIYGSDEFFTSPT 199
>sp|Q5Q0H2|FLA19_ARATH Fasciclin-like arabinogalactan protein 19 OS=Arabidopsis thaliana
GN=FLA19 PE=2 SV=2
Length = 248
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 141 VNAFEEASGVLRSKGYSLMGSFLELQLLGF---SDRSGIAELTVFAPFDGVM--MDYVGN 195
+ E A +LR +G +L + + L F SD S LT+FAP D ++ +D +
Sbjct: 32 LEELERAIAILRVRGRALFANAIITSDLLFDLLSDES----LTLFAPTDSMLFDLDMTHS 87
Query: 196 VSEYSSLLLRHTVPCKISWSDLVGFDDGDALKTFLNGFKINVTRSDGDDDLLMLNGVVIS 255
+ Y S L H+VP ++S S L + +L T L ++ +T+ +D + L+GV +
Sbjct: 88 LPFYVSTLRLHSVPLRLSLSGLRSLPNSSSLPTLLPSHRLLLTKHSSSNDSIFLDGVQLL 147
Query: 256 SPNLYYSDWLVVHGIHEVLAV--PATTKEATESSSQMG 291
P L+ + VHG+ ++L + P++ E S+ +
Sbjct: 148 IPGLFDGQHIAVHGLADLLPLTAPSSPNRLVEDSTALA 185
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 21 LTIFSPSDSAF----VSSGQP-SLSLLEFHFSPLSLPLYSLKKLPCNSKIPTLSPSHSLV 75
LT+F+P+DS ++ P +S L H PL L L L+ LP +S +PTL PSH L+
Sbjct: 69 LTLFAPTDSMLFDLDMTHSLPFYVSTLRLHSVPLRLSLSGLRSLPNSSSLPTLLPSHRLL 128
Query: 76 ITSF-PSDCNVSLKGVNLTHKPIYNDGLLVIYGINEFF 112
+T S+ ++ L GV L +++ + ++G+ +
Sbjct: 129 LTKHSSSNDSIFLDGVQLLIPGLFDGQHIAVHGLADLL 166
>sp|Q9FL53|FLA21_ARATH Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana
GN=FLA21 PE=2 SV=1
Length = 353
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 120/282 (42%), Gaps = 31/282 (10%)
Query: 18 SPFLTIFSPSDSAF--VSSGQPSL--SLLEFHFSPLSLPLYSLKKLPCNSKIPTLSPSHS 73
SP T+F+ D++F SS P LL +H PL L + L K P + +PTL S
Sbjct: 79 SPNTTLFAIEDASFFNTSSLHPLFLKQLLHYHTLPLMLSMDDLLKKPQGTCLPTLLHHKS 138
Query: 74 LVITSFPSDCNVS-LKGVNLTHKPIYNDGLLVIYGINEFFNP-----------GYGVSDS 121
+ I++ + + + V +TH ++ LVI+G+ F+P SD+
Sbjct: 139 VQISTVNQESRTAEVNHVRITHPDMFLGDSLVIHGVIGPFSPLQPHSDHLIHTPLCQSDT 198
Query: 122 PFKTDQDAISPCGFSFNDSVNAFEEASGVLRSKGYSLMGSFLELQLLGFSDRSGIAELTV 181
KT + P + V V + G + S L + + + +T+
Sbjct: 199 TNKTSNNEEVPVSIDWTRIVQLLSSNGFVPFAIG---LHSVLNRIVNDHNHHKNLTGVTI 255
Query: 182 FAPFDGVMMDYVGNVSEYSSLLLRHTVPC-KISWSDLVGFDDGDALKTF-----LNGFKI 235
A + V + + S + ++RH + ++++ D D +KT L +
Sbjct: 256 LATPNLVSL---SSASPFLYEVVRHHILVQRLTYKDFASMSDKATVKTLDPYQDLTITRR 312
Query: 236 NVTRSDGDDDLLMLNGVVISSPNLYYSDWLVVHGIHEVLAVP 277
NV S GD M++GV I P+++ S V+HGI L +P
Sbjct: 313 NVNSSGGD---FMISGVEIVDPDMFSSSNFVIHGISHTLEIP 351
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 146 EASGVLRSKGYSLMGSFLELQLLGFSDRSGIAELTVFAPFDGVMMDYVGNVSEYSSLLLR 205
AS LR + + + L + F S T+FA D N S L L+
Sbjct: 51 NASNTLRQSNFKAIATLLHISPEIFLSSS--PNTTLFAIEDASFF----NTSSLHPLFLK 104
Query: 206 -----HTVPCKISWSDLVGFDDGDALKTFLNGFKINVTRSDGDDDLLMLNGVVISSPNLY 260
HT+P +S DL+ G L T L+ + ++ + + +N V I+ P+++
Sbjct: 105 QLLHYHTLPLMLSMDDLLKKPQGTCLPTLLHHKSVQISTVNQESRTAEVNHVRITHPDMF 164
Query: 261 YSDWLVVHGI 270
D LV+HG+
Sbjct: 165 LGDSLVIHGV 174
>sp|Q93W32|FLA18_ARATH Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana
GN=FLA18 PE=2 SV=1
Length = 462
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 156 YSLMGSFLELQLL--GFSDRSGIAELTVFAPFDGVMMDYV-----------GNVSEYSSL 202
Y+ + +E LL D G +T+FAP + + + GN+ +L
Sbjct: 53 YTELAELVEKALLLQTLEDAVGRHNITIFAPRNEALERDLDPDFKRFLLQPGNLKSLQTL 112
Query: 203 LLRHTVPCKISWSDLVGFDDGDALKTFLNGFKI-NVTRSDGDDDLLMLNGVVISSP-NLY 260
LL H +P ++ + + G L ++ ++++ G + ++N VI+ P +L
Sbjct: 113 LLSHIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLT 172
Query: 261 YSDWLVVHGIHEVLAVPATTKE 282
D L +HGI E L +P + +E
Sbjct: 173 RPDGL-IHGI-ERLLIPRSVQE 192
>sp|Q8LEJ6|FLA11_ARATH Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana
GN=FLA11 PE=2 SV=2
Length = 246
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 31/126 (24%)
Query: 21 LTIFSPSDSAFVS---------SGQPSLSLLEFHFSP--LSLPLYSLKKLPC-------- 61
LT+F+P+D+AF S S Q + L++FH P +++P + P
Sbjct: 75 LTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQ 134
Query: 62 NSKIPTLSPSHSLVITSFPSDCNVSLKGVNLT-HKPIYNDGLLVIYGINEFFNP----GY 116
N K P L ITS + N++ V+ T +Y+D L +Y +++ P G
Sbjct: 135 NGKFP-------LNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFGS 187
Query: 117 GVSDSP 122
V+ +P
Sbjct: 188 SVAPAP 193
>sp|Q8TS07|FUMC_METAC Fumarate hydratase class II OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=fumC PE=3
SV=2
Length = 484
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 101 GLLVIYGINEFFNPGYGVSDS-------PFKTDQDAISPCGFSFNDSVNAFEEASGVLRS 153
G V GIN + G V+D PF T +P F+ S++A +S LR+
Sbjct: 241 GTAVGTGINTPPDFGEKVADEIARLTGHPFVT-----APNKFAAQGSLDAMVTSSAALRT 295
Query: 154 KGYSLMGSFLELQLLGFSDRSGIAELTVFA--PFDGVMMDYVGNVSEYSSLLL 204
+LM +LQ LG RSG+ EL + + P +M V E + L++
Sbjct: 296 LAVALMKIANDLQWLGSGPRSGLHELILPSDEPGSSIMPGKVNPTQEEAMLMV 348
>sp|B8DFX9|GCSPA_LISMH Probable glycine dehydrogenase [decarboxylating] subunit 1
OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=gcvPA PE=3 SV=1
Length = 448
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 164 ELQLLGFSDRSGIAELTVFAPFDGVMMDYVGNVSEYSSLLLRHTVPCKISWSDLVGFDDG 223
ELQ + F ++ IAELT + M D ++E + L HT KI S V +
Sbjct: 112 ELQAI-FEFQTMIAELTGMDLANSSMYDGGTALAEAAMLASGHTKRKKILISGAVHPESS 170
Query: 224 DALKTFLNGFKINVT---RSDGDDDLLMLN--------GVVISSPNLY 260
+ LKT+ G I V DG D+ L G V+ PN Y
Sbjct: 171 NVLKTYATGQHIEVEVIPELDGKTDIEALKKALSDDIAGFVVQYPNFY 218
>sp|C1L2Q5|GCSPA_LISMC Probable glycine dehydrogenase [decarboxylating] subunit 1
OS=Listeria monocytogenes serotype 4b (strain CLIP80459)
GN=gcvPA PE=3 SV=1
Length = 448
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 164 ELQLLGFSDRSGIAELTVFAPFDGVMMDYVGNVSEYSSLLLRHTVPCKISWSDLVGFDDG 223
ELQ + F ++ IAELT + M D ++E + L HT KI S V +
Sbjct: 112 ELQAI-FEFQTMIAELTGMDLANSSMYDGGTALAEAAMLASGHTKRKKILISGAVHPESS 170
Query: 224 DALKTFLNGFKINVT---RSDGDDDLLMLN--------GVVISSPNLY 260
+ LKT+ G I V DG D+ L G V+ PN Y
Sbjct: 171 NVLKTYATGQHIEVEVIPELDGKTDIEALKKALSDDIAGFVVQYPNFY 218
>sp|Q71ZX3|GCSPA_LISMF Probable glycine dehydrogenase [decarboxylating] subunit 1
OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=gcvPA PE=3 SV=1
Length = 448
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 164 ELQLLGFSDRSGIAELTVFAPFDGVMMDYVGNVSEYSSLLLRHTVPCKISWSDLVGFDDG 223
ELQ + F ++ IAELT + M D ++E + L HT KI S V +
Sbjct: 112 ELQAI-FEFQTMIAELTGMDLANSSMYDGGTALAEAAMLASGHTKRKKILISGAVHPESS 170
Query: 224 DALKTFLNGFKINVT---RSDGDDDLLMLN--------GVVISSPNLY 260
+ LKT+ G I V DG D+ L G V+ PN Y
Sbjct: 171 NVLKTYATGQHIEVEVIPELDGKTDIEALKKALSDDIAGFVVQYPNFY 218
>sp|A0AIF0|GCSPA_LISW6 Probable glycine dehydrogenase [decarboxylating] subunit 1
OS=Listeria welshimeri serovar 6b (strain ATCC 35897 /
DSM 20650 / SLCC5334) GN=gcvPA PE=3 SV=1
Length = 448
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 164 ELQLLGFSDRSGIAELTVFAPFDGVMMDYVGNVSEYSSLLLRHTVPCKISWSDLVGFDDG 223
ELQ + F ++ IAELT + M D ++E + L HT KI S V +
Sbjct: 112 ELQAI-FEFQTMIAELTGMDLANSSMYDGGTALAEAAMLASGHTKRKKILISGAVHPESS 170
Query: 224 DALKTFLNGFKINVT---RSDGDDDLLMLN--------GVVISSPNLY 260
+ LKT+ G I V DG D+ L G V+ PN Y
Sbjct: 171 NVLKTYATGQHIEVEVIPEIDGKTDMDALKKALSEDIAGFVVQYPNFY 218
>sp|Q8LEE9|FLA12_ARATH Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana
GN=FLA12 PE=2 SV=2
Length = 249
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 25/113 (22%)
Query: 21 LTIFSPSDSAFVS---------SGQPSLSLLEFHFSPLSLPLYSLKKL--PCNSKIPTLS 69
+TIF+PSDS+F + + + L++FH P + + + + P ++ +
Sbjct: 77 ITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSA 136
Query: 70 PSHSLVITSFPSDCNVSLKGVNLT--------HKPIYNDGLLVIYGINEFFNP 114
H FP + S VN+T +Y+DG L +Y +++ P
Sbjct: 137 DGH------FPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLP 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,292,249
Number of Sequences: 539616
Number of extensions: 4912886
Number of successful extensions: 9959
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 9945
Number of HSP's gapped (non-prelim): 34
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)