BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042281
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 157 KYFERIRALYLASLEKFRDLSLKIQLEHFKRLRALDYVEVGCQYFNLFRLILVDLVPS-- 214
K+ +RI AL+ +++ R +SL I+ E KR+ VG N I D+V +
Sbjct: 411 KHLDRIVALFPKDVDRLRRMSL-IEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKV 469
Query: 215 FKDVKLEEPS 224
FKD EP
Sbjct: 470 FKDFSELEPD 479
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 157 KYFERIRALYLASLEKFRDLSLKIQLEHFKRLRALDYVEVGCQYFNLFRLILVDLVPS-- 214
K+ +RI AL+ +++ R +SL I+ E KR+ VG N I D+V +
Sbjct: 412 KHLDRIVALFPKDVDRLRRMSL-IEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKV 470
Query: 215 FKDVKLEEPS 224
FKD EP
Sbjct: 471 FKDFSELEPD 480
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 157 KYFERIRALYLASLEKFRDLSLKIQLEHFKRLRALDYVEVGCQYFNLFRLILVDLVPS-- 214
K+ +RI AL+ +++ R +SL I+ E KR+ VG N I D+V +
Sbjct: 409 KHLDRIVALFPKDVDRLRRMSL-IEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKV 467
Query: 215 FKDVKLEEPS 224
FKD EP
Sbjct: 468 FKDFSELEPD 477
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 157 KYFERIRALYLASLEKFRDLSLKIQLEHFKRLRALDYVEVGCQYFNLFRLILVDLVPS-- 214
K+ +RI AL+ +++ R +SL I+ E KR+ VG N I D+V +
Sbjct: 410 KHLDRIVALFPKDVDRLRRMSL-IEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKV 468
Query: 215 FKDVKLEEPS 224
FKD EP
Sbjct: 469 FKDFSELEPD 478
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 157 KYFERIRALYLASLEKFRDLSLKIQLEHFKRLRALDYVEVGCQYFNLFRLILVDLVPS-- 214
K+ +RI AL+ +++ R +SL I+ E KR+ VG N I D+V +
Sbjct: 410 KHLDRIVALFPKDVDRLRRMSL-IEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKV 468
Query: 215 FKDVKLEEPS 224
FKD EP
Sbjct: 469 FKDFSELEPD 478
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 157 KYFERIRALYLASLEKFRDLSLKIQLEHFKRLRALDYVEVGCQYFNLFRLILVDLVPS-- 214
K+ +RI AL+ +++ R +SL I+ E KR+ VG N I D+V +
Sbjct: 409 KHLDRIVALFPKDVDRLRRMSL-IEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKV 467
Query: 215 FKDVKLEEPS 224
FKD EP
Sbjct: 468 FKDFSELEPD 477
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 157 KYFERIRALYLASLEKFRDLSLKIQLEHFKRLRALDYVEVGCQYFNLFRLILVDLVPS-- 214
K+ +RI AL+ +++ R +SL I+ E KR+ VG N I D+V +
Sbjct: 409 KHLDRIVALFPKDVDRLRRMSL-IEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKV 467
Query: 215 FKDVKLEEPS 224
FKD EP
Sbjct: 468 FKDFSELEPD 477
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 157 KYFERIRALYLASLEKFRDLSLKIQLEHFKRLRALDYVEVGCQYFNLFRLILVDLVPS-- 214
K+ +RI AL+ +++ R +SL I+ E KR+ VG N I D+V +
Sbjct: 387 KHLDRIVALFPKDVDRLRRMSL-IEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKV 445
Query: 215 FKDVKLEEPS 224
FKD EP
Sbjct: 446 FKDFSELEPD 455
>pdb|1WE4|A Chain A, Crystal Structure Of Class A Beta-Lactamase Toho-1 G238c
Mutant
Length = 262
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 95 LLLHLGGPDTITAFA 109
L+ HLGGPD +TAFA
Sbjct: 112 LIAHLGGPDKVTAFA 126
>pdb|2WYX|A Chain A, Neutron Structure Of A Class A Beta-Lactamase Toho-1
E166a R274n R276n Triple Mutant
Length = 256
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 95 LLLHLGGPDTITAFA 109
L+ HLGGPD +TAFA
Sbjct: 109 LIAHLGGPDKVTAFA 123
>pdb|2ZQ8|A Chain A, Apo Structure Of Class A Beta-Lactamase Toho-1 R274nR276N
Double Mutant
Length = 262
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 95 LLLHLGGPDTITAFA 109
L+ HLGGPD +TAFA
Sbjct: 112 LIAHLGGPDKVTAFA 126
>pdb|4BD1|A Chain A, Neutron Structure Of A Perdeuterated Toho-1 R274n R276n
Double Mutant Beta-lactamase In Complex With A Fully
Deuterated Boronic Acid (bzb)
Length = 261
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 95 LLLHLGGPDTITAFA 109
L+ HLGGPD +TAFA
Sbjct: 111 LIAHLGGPDKVTAFA 125
>pdb|1IYS|A Chain A, Crystal Structure Of Class A Beta-Lactamase Toho-1
Length = 262
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 95 LLLHLGGPDTITAFA 109
L+ HLGGPD +TAFA
Sbjct: 112 LIAHLGGPDKVTAFA 126
>pdb|2ZQ7|A Chain A, Apo Structure Of Class A Beta-Lactamase Toho-1
E166aR274NR276N TRIPLE MUTANT
pdb|2ZQ9|A Chain A, Cephalothin Acyl-Intermediate Structure Of Class A Beta-
Lactamase Toho-1 E166aR274NR276N TRIPLE MUTANT
pdb|2ZQA|A Chain A, Cefotaxime Acyl-Intermediate Structure Of Class A
Beta-Lacta Toho-1 E166aR274NR276N TRIPLE MUTANT
pdb|2ZQC|A Chain A, Aztreonam Acyl-Intermediate Structure Of Class A
Beta-Lactam Toho-1 E166aR274NR276N TRIPLE MUTANT
pdb|2ZQD|A Chain A, Ceftazidime Acyl-Intermediate Structure Of Class A
Beta-Lact Toho-1 E166aR274NR276N TRIPLE MUTANT
Length = 262
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 95 LLLHLGGPDTITAFA 109
L+ HLGGPD +TAFA
Sbjct: 112 LIAHLGGPDKVTAFA 126
>pdb|4BD0|A Chain A, X-ray Structure Of A Perdeuterated Toho-1 R274n R276n
Double Mutant Beta-lactamase In Complex With A Fully
Deuterated Boronic Acid (bzb)
Length = 261
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 95 LLLHLGGPDTITAFA 109
L+ HLGGPD +TAFA
Sbjct: 111 LIAHLGGPDKVTAFA 125
>pdb|2XQZ|A Chain A, Neutron Structure Of The Perdeuterated Toho-1 R274n R276n
Double Mutant Beta-Lactamase
Length = 260
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 95 LLLHLGGPDTITAFA 109
L+ HLGGPD +TAFA
Sbjct: 110 LIAHLGGPDKVTAFA 124
>pdb|1IYO|A Chain A, Toho-1 Beta-Lactamase In Complex With Cefotaxime
pdb|1IYP|A Chain A, Toho-1 Beta-Lactamase In Complex With Cephalothin
pdb|1IYQ|A Chain A, Toho-1 Beta-Lactamase In Complex With Benzylpenicillin
pdb|1BZA|A Chain A, Beta-Lactamase Toho-1 From Escherichia Coli Tuh12191
Length = 262
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 95 LLLHLGGPDTITAFA 109
L+ HLGGPD +TAFA
Sbjct: 112 LIAHLGGPDKVTAFA 126
>pdb|2XR0|A Chain A, Room Temperature X-Ray Structure Of The Perdeuterated
Toho-1 R274n R276n Double Mutant Beta-Lactamase
Length = 260
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 95 LLLHLGGPDTITAFA 109
L+ HLGGPD +TAFA
Sbjct: 110 LIAHLGGPDKVTAFA 124
>pdb|3BFC|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFC|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFC|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFC|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFF|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFF|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFF|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFF|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFG|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
pdb|3BFG|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
pdb|3BFG|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
pdb|3BFG|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
Length = 262
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 95 LLLHLGGPDTITAFA 109
LL HLGGP +TAFA
Sbjct: 112 LLAHLGGPGNVTAFA 126
>pdb|3BFD|A Chain A, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
pdb|3BFD|B Chain B, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
pdb|3BFD|C Chain C, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
pdb|3BFD|D Chain D, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
Length = 263
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 95 LLLHLGGPDTITAFA 109
LL HLGGP +TAFA
Sbjct: 113 LLAHLGGPGNVTAFA 127
>pdb|3BFE|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
pdb|3BFE|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
pdb|3BFE|C Chain C, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
pdb|3BFE|D Chain D, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
Length = 262
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 95 LLLHLGGPDTITAFA 109
LL HLGGP +TAFA
Sbjct: 112 LLAHLGGPGNVTAFA 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.145 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,351,609
Number of Sequences: 62578
Number of extensions: 276281
Number of successful extensions: 766
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 21
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)