BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042281
         (271 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P09811|PYGL_RAT Glycogen phosphorylase, liver form OS=Rattus norvegicus GN=Pygl
           PE=1 SV=5
          Length = 850

 Score = 34.3 bits (77), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 157 KYFERIRALYLASLEKFRDLSLKIQLEHFKRLRALDYVEVGCQYFNLFRLILVDLVPS-- 214
           K+ +RI AL+   +++ R +SL I+ E  KR+       VGC   N    I  D+V +  
Sbjct: 410 KHLDRIVALFPKDIDRMRRMSL-IEEEGGKRINMAHLCIVGCHAVNGVAKIHSDIVKTQV 468

Query: 215 FKDVKLEEPS 224
           FKD    EP 
Sbjct: 469 FKDFSELEPD 478


>sp|Q54RJ1|CNRB_DICDI CLPTM1-like membrane protein cnrB OS=Dictyostelium discoideum
           GN=cnrB PE=3 SV=1
          Length = 619

 Score = 33.9 bits (76), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 65  GIGLITERARDNPELSM-PTEKELLAFWAPFLLLHL 99
           G  L+ E+++D PE+   PTE  L+++W P L LHL
Sbjct: 181 GKNLLEEKSKDEPEVEYDPTE--LISYWKPTLSLHL 214


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.329    0.145    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,909,287
Number of Sequences: 539616
Number of extensions: 3889319
Number of successful extensions: 10425
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10425
Number of HSP's gapped (non-prelim): 2
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)