Query 042281
Match_columns 271
No_of_seqs 128 out of 396
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:42:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lbf_B 60S acidic ribosomal pr 21.2 37 0.0013 23.7 1.4 19 92-110 6-24 (70)
2 3iz5_v 60S acidic ribosomal pr 20.5 26 0.0009 26.8 0.5 20 92-111 5-24 (113)
3 3izc_v 60S acidic ribosomal pr 16.7 48 0.0016 25.0 1.2 19 92-111 5-23 (106)
4 3bp3_A Glucose-specific phosph 16.2 70 0.0024 22.7 2.0 24 92-115 7-39 (82)
5 2rod_B NOXA, noxaa; MCL-1, apo 12.6 2E+02 0.007 15.7 2.7 19 150-168 6-24 (27)
6 3ggz_E Vacuolar protein-sortin 12.3 92 0.0032 18.0 1.3 10 157-166 19-28 (29)
7 3dwa_A SUBB, subtilase cytotox 9.8 1.4E+02 0.0049 23.1 2.0 25 104-128 41-65 (126)
8 1iba_A Glucose permease; phosp 9.7 1E+02 0.0035 22.9 1.2 24 92-115 16-48 (101)
9 3qnk_A Putative lipoprotein; a 9.2 5.4E+02 0.019 23.8 6.4 57 193-250 112-169 (517)
10 3jys_A SUSD superfamily protei 9.2 5.2E+02 0.018 24.0 6.2 54 193-249 123-176 (499)
No 1
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=21.24 E-value=37 Score=23.72 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCCceeeeec
Q 042281 92 APFLLLHLGGPDTITAFAL 110 (271)
Q Consensus 92 ApfLLlhLGG~DtITAysl 110 (271)
+..||+|+||..+||+-.+
T Consensus 6 yA~Lll~~~g~~~~ta~~I 24 (70)
T 2lbf_B 6 ASYLLAALGGNSSPSAKDI 24 (70)
T ss_dssp HHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHhCCCCCCCHHHH
Confidence 4568999999988886443
No 2
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=20.52 E-value=26 Score=26.82 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCceeeeecc
Q 042281 92 APFLLLHLGGPDTITAFALE 111 (271)
Q Consensus 92 ApfLLlhLGG~DtITAysle 111 (271)
|-.||+|+||..+||+-.|+
T Consensus 5 aAylL~~l~G~~~ptad~I~ 24 (113)
T 3iz5_v 5 AAYLLAYLSGNASPSAEDLT 24 (113)
T ss_dssp HHHHHHHHHTCCCCTTTTHH
T ss_pred HHHHHHHHcCCCCCCHHHHH
Confidence 56789999999999875443
No 3
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=16.66 E-value=48 Score=25.03 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCCceeeeecc
Q 042281 92 APFLLLHLGGPDTITAFALE 111 (271)
Q Consensus 92 ApfLLlhLGG~DtITAysle 111 (271)
|-.||+|+||.+ ||+-.++
T Consensus 5 aAyLL~~~gG~e-~tad~I~ 23 (106)
T 3izc_v 5 AAYLLLNAAGNT-PDATKIK 23 (106)
T ss_dssp HHHHHHHHHTCC-CTTTTHH
T ss_pred HHHHHHHhcCCC-CCHHHHH
Confidence 567899999999 8875443
No 4
>3bp3_A Glucose-specific phosphotransferase enzyme IIB component; transcription regulation, inner membrane, kinase, membrane, phosphoprotein; 1.65A {Escherichia coli} PDB: 1o2f_B 3bp8_C
Probab=16.15 E-value=70 Score=22.68 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCceee---------eeccchhh
Q 042281 92 APFLLLHLGGPDTITA---------FALEDNEL 115 (271)
Q Consensus 92 ApfLLlhLGG~DtITA---------ysleDn~l 115 (271)
|.-++-.+||.|||.. +.+.|.++
T Consensus 7 a~~ii~~lGG~~NI~~v~~C~TRLR~~lkD~~~ 39 (82)
T 3bp3_A 7 APALVAAFGGKENITNLDACITRLRVSVADVSK 39 (82)
T ss_dssp HHHHHHHTTCGGGEEEEEECSSEEEEEESCGGG
T ss_pred HHHHHHHhCCHHHHhhhccccceEEEEEeCccc
Confidence 5567889999999987 55677654
No 5
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=12.62 E-value=2e+02 Score=15.74 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 042281 150 VFIAAMIKYFERIRALYLA 168 (271)
Q Consensus 150 ~fv~G~iKy~eR~~aL~~a 168 (271)
-|.+.+-|.|.|++.-++|
T Consensus 6 efaaqlrkigdkvyctwsa 24 (27)
T 2rod_B 6 EFAAQLRKIGDKVYCTWSA 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCeeEEeecC
Confidence 4778888999999988876
No 6
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=12.27 E-value=92 Score=17.98 Aligned_cols=10 Identities=50% Similarity=0.647 Sum_probs=7.6
Q ss_pred HHHHHHHHHH
Q 042281 157 KYFERIRALY 166 (271)
Q Consensus 157 Ky~eR~~aL~ 166 (271)
|.+||..|||
T Consensus 19 kLAqRLRALR 28 (29)
T 3ggz_E 19 KLAQRLRALR 28 (29)
T ss_pred HHHHHHHHHc
Confidence 6678888876
No 7
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=9.77 E-value=1.4e+02 Score=23.06 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=22.1
Q ss_pred ceeeeeccchhhhhHHHHHHHhhhh
Q 042281 104 TITAFALEDNELWIRQLLGLVVQVV 128 (271)
Q Consensus 104 tITAysleDn~lw~Rhll~l~~Qv~ 128 (271)
+++|-++.|+.-|.+++-+++-|+-
T Consensus 41 ~v~aCaV~~~s~~~~~Fd~~~~~A~ 65 (126)
T 3dwa_A 41 SISACSMKNSSVWGASFSTLYNQAL 65 (126)
T ss_dssp EEEEEEETTCSSSGGGHHHHHHHHH
T ss_pred ceeEEEEeccccccccHHHHHHHhH
Confidence 6899999999999999999887763
No 8
>1iba_A Glucose permease; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane, inner membrane, phoshphotransferase; NMR {Escherichia coli} SCOP: d.95.1.1
Probab=9.75 E-value=1e+02 Score=22.90 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCCceee---------eeccchhh
Q 042281 92 APFLLLHLGGPDTITA---------FALEDNEL 115 (271)
Q Consensus 92 ApfLLlhLGG~DtITA---------ysleDn~l 115 (271)
|.-++-.+||.|||+. +.+.|.++
T Consensus 16 A~~Ii~alGG~eNI~~v~~C~TRLR~~lkD~s~ 48 (101)
T 1iba_A 16 APALVAAFGGKENITNLDACITRLRVSVADVSK 48 (101)
T ss_dssp HHHHTHHHHTCTTCSBCCCCTTEEECBCSTTSS
T ss_pred HHHHHHHhCCHHHHhhhcccCceEEEEEeCccc
Confidence 5567889999999987 45667543
No 9
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=9.21 E-value=5.4e+02 Score=23.85 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=39.5
Q ss_pred HHHHhhhhHHHHHHhhcccccCccccccccc-ccccCChhhHHHHHHHHHHHHHhhhhc
Q 042281 193 YVEVGCQYFNLFRLILVDLVPSFKDVKLEEP-SIDDFSPAEALGIIEVELNLVYEVFHT 250 (271)
Q Consensus 193 ~l~~a~~lf~~~r~~f~d~~~~~~~~~~~~~-~~~~~~~~~afkviE~ELsf~yD~lYT 250 (271)
...+|+..|.+. +.|-|+|+..+....... ...+...+++|+-|+.+|..+-+.|=.
T Consensus 112 ~flRA~~yf~L~-~~~G~VP~~~~~~~~~~~~~~~r~~~~ev~~~I~~dL~~A~~~Lp~ 169 (517)
T 3qnk_A 112 HFLRAMFYFEMV-KRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPA 169 (517)
T ss_dssp HHHHHHHHHHHH-HHHSSCCCCSSCCCTTSCCCCCCCCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHH-HHhCCceeeCCcCCccccccCCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 456788888887 778898875443211111 223446789999999999999988743
No 10
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=9.19 E-value=5.2e+02 Score=23.99 Aligned_cols=54 Identities=15% Similarity=0.050 Sum_probs=38.3
Q ss_pred HHHHhhhhHHHHHHhhcccccCcccccccccccccCChhhHHHHHHHHHHHHHhhhh
Q 042281 193 YVEVGCQYFNLFRLILVDLVPSFKDVKLEEPSIDDFSPAEALGIIEVELNLVYEVFH 249 (271)
Q Consensus 193 ~l~~a~~lf~~~r~~f~d~~~~~~~~~~~~~~~~~~~~~~afkviE~ELsf~yD~lY 249 (271)
...+|+..|.+. +.|-|+|+........ ...+...+++|+-|+.||-.+-+.|=
T Consensus 123 ~flRA~~Yf~L~-~~~G~VP~~~~~~~~~--~~~r~~~~evy~~I~~DL~~A~~~Lp 176 (499)
T 3jys_A 123 RFNRAFAYYVLM-DMFALPPFITEKNYSI--EPAPLSREDLFNWIEAELNEIKPNLP 176 (499)
T ss_dssp HHHHHHHHHHHH-HHHSCCBCCCTTSCCS--SCCBCCHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHH-HHhCCCceecccCCCC--CCCcCCHHHHHHHHHHHHHHHHHhCC
Confidence 356788888886 7888888754432211 22344578999999999999988764
Done!