Query 042281
Match_columns 271
No_of_seqs 128 out of 396
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 07:42:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042281.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042281hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bp8c1 d.95.1.1 (C:13-87) Glu 34.9 10 0.00076 25.1 2.3 17 92-108 2-18 (75)
2 d3ejna1 a.118.8.6 (A:32-490) U 12.1 1.7E+02 0.013 23.9 6.2 59 192-251 76-136 (459)
3 d3cgha1 a.118.8.6 (A:31-537) U 6.9 3.8E+02 0.028 21.8 6.4 56 192-249 105-160 (507)
4 d2hg7a1 d.186.2.1 (A:1-60) Pha 6.9 1.2E+02 0.0088 18.7 2.0 12 7-18 44-55 (60)
5 d1o65a_ b.58.1.2 (A:) Hypothet 6.1 47 0.0034 26.4 -0.4 25 97-121 56-81 (233)
6 d2fi9a1 c.103.1.1 (A:11-128) H 5.5 84 0.0061 21.8 0.7 12 98-109 1-12 (118)
7 d1c99a_ f.17.1.1 (A:) F1F0 ATP 4.7 3E+02 0.022 17.8 3.2 33 36-68 38-70 (79)
8 d1jb0x_ f.23.20.1 (X:) Subunit 4.7 1.4E+02 0.01 15.4 1.1 11 87-97 5-15 (29)
9 d2h3ja1 b.34.1.2 (A:1-75) Hypo 4.4 2.9E+02 0.021 17.1 3.0 40 100-139 7-46 (75)
10 d2r6gf2 f.58.1.1 (F:261-504) M 4.4 6.4E+02 0.047 18.4 5.8 48 25-72 35-82 (244)
No 1
>d3bp8c1 d.95.1.1 (C:13-87) Glucose permease domain IIB {Escherichia coli [TaxId: 562]}
Probab=34.87 E-value=10 Score=25.08 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCCceeee
Q 042281 92 APFLLLHLGGPDTITAF 108 (271)
Q Consensus 92 ApfLLlhLGG~DtITAy 108 (271)
|+-++-++||.|||+..
T Consensus 2 A~~ii~~lGG~~NI~~~ 18 (75)
T d3bp8c1 2 APALVAAFGGKENITNL 18 (75)
T ss_dssp HHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 56678899999999874
No 2
>d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025 {Bacteroides fragilis [TaxId: 817]}
Probab=12.07 E-value=1.7e+02 Score=23.89 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=39.5
Q ss_pred hHHHHhhhhHHHHHHhhcccccCcccccccccccc--cCChhhHHHHHHHHHHHHHhhhhcc
Q 042281 192 DYVEVGCQYFNLFRLILVDLVPSFKDVKLEEPSID--DFSPAEALGIIEVELNLVYEVFHTK 251 (271)
Q Consensus 192 ~~l~~a~~lf~~~r~~f~d~~~~~~~~~~~~~~~~--~~~~~~afkviE~ELsf~yD~lYTK 251 (271)
-...+|+..|.+. ++|-|.|+.+........... ..+.+++|+-|+.+|....+.|=+.
T Consensus 76 A~flRA~~yf~Lv-~~fGdVPy~~~~~~~~~~~~~p~~ds~~eVY~~I~~DL~~Ai~~L~~~ 136 (459)
T d3ejna1 76 TKFFRAYYFYELT-LRFGDIPYSQALKGEKEEIYTPEYDAQEDVFAGILQELREADEILAND 136 (459)
T ss_dssp HHHHHHHHHHHHH-HHHSSBCCTTTTC------CCCCCBCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH-HHhCCcceeccccCCcccccccCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 3567889999986 789999886654322222221 2346789999999999998877443
No 3
>d3cgha1 a.118.8.6 (A:31-537) Uncharacterized protein BT3984 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=6.93 E-value=3.8e+02 Score=21.85 Aligned_cols=56 Identities=13% Similarity=-0.118 Sum_probs=40.1
Q ss_pred hHHHHhhhhHHHHHHhhcccccCcccccccccccccCChhhHHHHHHHHHHHHHhhhh
Q 042281 192 DYVEVGCQYFNLFRLILVDLVPSFKDVKLEEPSIDDFSPAEALGIIEVELNLVYEVFH 249 (271)
Q Consensus 192 ~~l~~a~~lf~~~r~~f~d~~~~~~~~~~~~~~~~~~~~~~afkviE~ELsf~yD~lY 249 (271)
-.+.+|+..|.+. +.|-|+|.++....... .....+.+++|+-|+.+|--+-+.|=
T Consensus 105 A~~lrA~~y~~L~-d~fGdIPy~~a~~~~~~-~~~~ds~~eVY~~Ii~DL~~Ai~~L~ 160 (507)
T d3cgha1 105 AQVIKVAAMHRVT-DAFGPIPYSQIGANGEI-ATPYDSQEVTYNTFFDELNAAIATLN 160 (507)
T ss_dssp HHHHHHHHHHHHH-HHHSSBCCTTCCTTCCC-CSCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHcCCeeeeecCCCCCc-CCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 3567888888886 88999998765432211 12234568999999999999988873
No 4
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=6.88 E-value=1.2e+02 Score=18.73 Aligned_cols=12 Identities=8% Similarity=0.426 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q 042281 7 ELVKKLWNDWNI 18 (271)
Q Consensus 7 ~~~~~~w~~w~i 18 (271)
+.+..||.+|+.
T Consensus 44 ~EL~~~w~e~q~ 55 (60)
T d2hg7a1 44 AELETWWEELQK 55 (60)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 788999999975
No 5
>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]}
Probab=6.14 E-value=47 Score=26.43 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=20.1
Q ss_pred HHhcCCC-ceeeeeccchhhhhHHHH
Q 042281 97 LHLGGPD-TITAFALEDNELWIRQLL 121 (271)
Q Consensus 97 lhLGG~D-tITAysleDn~lw~Rhll 121 (271)
-|-||+| .+..|+.|+-+.|.+.+-
T Consensus 56 ~~HGG~dkAV~~~~~e~y~~w~~~l~ 81 (233)
T d1o65a_ 56 KVHGGPDRALCHYPREHYLYWAREFP 81 (233)
T ss_dssp -CCCGGGGSEEEEETHHHHHHHHHCG
T ss_pred cCCCCcCCEEEEeCHHHHHHHHHHhc
Confidence 3569998 699999999999977653
No 6
>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]}
Probab=5.47 E-value=84 Score=21.78 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=10.7
Q ss_pred HhcCCCceeeee
Q 042281 98 HLGGPDTITAFA 109 (271)
Q Consensus 98 hLGG~DtITAys 109 (271)
|.+||.-|+||+
T Consensus 1 ~f~~~~~I~~Yg 12 (118)
T d2fi9a1 1 HFPGRAPIDAYG 12 (118)
T ss_dssp CBSSCCCEEEEE
T ss_pred CCCCCCcEeeec
Confidence 788999999998
No 7
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}
Probab=4.73 E-value=3e+02 Score=17.75 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=27.9
Q ss_pred cCCCCCCchhhHHHHHHHHHhhhhhHHHHHHhh
Q 042281 36 APLRKTTGHKLIILIIWSAYLLADWAANFGIGL 68 (271)
Q Consensus 36 ~~~Rrr~~~~~lr~~lWlAY~~ad~~a~YaLG~ 68 (271)
+.-|+....+-++.-..+.-.+.|++++|++..
T Consensus 38 ~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvi 70 (79)
T d1c99a_ 38 GAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGL 70 (79)
T ss_dssp HHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888889999999999999999999863
No 8
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.68 E-value=1.4e+02 Score=15.35 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=7.6
Q ss_pred hhhHHHHHHHH
Q 042281 87 LLAFWAPFLLL 97 (271)
Q Consensus 87 L~~~WApfLLl 97 (271)
...|||..||.
T Consensus 5 frt~wa~llla 15 (29)
T d1jb0x_ 5 FRTFWAVLLLA 15 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45689987764
No 9
>d2h3ja1 b.34.1.2 (A:1-75) Hypothetical protein PA4359 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.43 E-value=2.9e+02 Score=17.09 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=30.3
Q ss_pred cCCCceeeeeccchhhhhHHHHHHHhhhheeeEEEEeccC
Q 042281 100 GGPDTITAFALEDNELWIRQLLGLVVQVVAAVYIFFQSLH 139 (271)
Q Consensus 100 GG~DtITAysleDn~lw~Rhll~l~~Qv~~a~Yv~~~s~~ 139 (271)
|-+-.|+.|+-|-++..+|++.++-+--..-+-+..++..
T Consensus 7 g~~~~I~g~~~~~~~~~~~rL~~mG~~~G~~v~v~~~~p~ 46 (75)
T d2h3ja1 7 SRSYRITGYSPAISNGYRQRLFSMGLLPGAALRVVRIAPL 46 (75)
T ss_dssp CCEEEEEEECTTCCTTHHHHHHHHTCCTTCEEEEEECCTT
T ss_pred CCEEEEEEECCcCCHHHHHHHHHcCCCCCCEEEEEEECCC
Confidence 3445799998775666689999998888888778777643
No 10
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.40 E-value=6.4e+02 Score=18.35 Aligned_cols=48 Identities=8% Similarity=0.187 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhhhhhHHHHHHhhhhcc
Q 042281 25 SLSLQTVLVFFAPLRKTTGHKLIILIIWSAYLLADWAANFGIGLITER 72 (271)
Q Consensus 25 S~~Lq~~L~~~~~~Rrr~~~~~lr~~lWlAY~~ad~~a~YaLG~l~~~ 72 (271)
+..+-..+...-.+|+...+...|.++-+.+...-.++.+....+...
T Consensus 35 ~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~ 82 (244)
T d2r6gf2 35 TVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQ 82 (244)
T ss_dssp HHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 333333344444566777888999999999888876666665555443
Done!