BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042282
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 126/262 (48%), Gaps = 39/262 (14%)
Query: 70 YSCERKEVVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR 129
Y ER+ + D KIPL+++Y + + +L YG+YG +D + L DR
Sbjct: 478 YKVERRFATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDR 537
Query: 130 GWVVAFADVRGGGGGDSSWHKFGSG-LYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYS 188
G + A A +RGG +W++ G+ L KRN+ D + ++LVN +L G S
Sbjct: 538 GMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRS 597
Query: 189 AGCLLVGAAINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYI 248
AG LL+GA +NM P LF A+ VPF+D+ TM DPS+PLT ++EE+GNP ++Y+
Sbjct: 598 AGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYM 657
Query: 249 RSYSPYDNIPS--------------------------------------VILKTNTTGGH 270
SYSP DN+ + ++L + GH
Sbjct: 658 LSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGH 717
Query: 271 FGEGGRYSQCEETAYDYAFLMK 292
F RY +E+A AF+ K
Sbjct: 718 FSAKDRYKFWKESAIQQAFVCK 739
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 5/189 (2%)
Query: 70 YSCERKEVVSHDGVKIPLTILYSRKAWLRD-QSSGLLQAYGAYGEVLDKGWCTDRLSLLD 128
Y E+ S DG K+P+ +++ RK RD + LL YG + ++ + + L LD
Sbjct: 415 YQVEQVFYASKDGTKVPMFVVH-RKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLD 473
Query: 129 RGWVVAFADVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYS 188
G V A A++RGGG +WH G K+N D + +YLV + Y +L G S
Sbjct: 474 AGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGS 533
Query: 189 AGCLLVGAAINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYI 248
G LLVGAA+ P+L+ A + VP LD+ L S + E+G + F+ +
Sbjct: 534 NGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGS---GRTWIPEYGTAEKPEDFKTL 590
Query: 249 RSYSPYDNI 257
+YSPY ++
Sbjct: 591 HAYSPYHHV 599
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 8/201 (3%)
Query: 70 YSCERKEVVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR 129
Y E++ S DG ++PL I Y + L + +L YG + L + + LD
Sbjct: 423 YVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDL 482
Query: 130 GWVVAFADVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSA 189
G V A A++RGGG +WH G+ K+N D + +YL EGY D+L G S
Sbjct: 483 GGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSN 542
Query: 190 GCLLVGAAINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIR 249
G LLVGA + P L A+ V LD+ + T Y+ + ++ F+Y++
Sbjct: 543 GGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTA--GTGWAYDYGTSADSEAMFDYLK 600
Query: 250 SYSPYDNI------PSVILKT 264
YSP N+ PS ++ T
Sbjct: 601 GYSPLHNVRPGVSYPSTMVTT 621
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 8/201 (3%)
Query: 70 YSCERKEVVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR 129
Y E++ S DG ++PL I Y + L + +L YG + L + + LD
Sbjct: 423 YVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDL 482
Query: 130 GWVVAFADVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSA 189
G V A A++RGGG +WH G+ K+N D + +YL EGY D+L G S
Sbjct: 483 GGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSN 542
Query: 190 GCLLVGAAINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIR 249
G LLVGA + P L A+ V LD+ + T Y+ + ++ F+Y++
Sbjct: 543 GGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTA--GTGWAYDYGTSADSEAMFDYLK 600
Query: 250 SYSPYDNI------PSVILKT 264
YSP N+ PS ++ T
Sbjct: 601 GYSPLHNVRPGVSYPSTMVTT 621
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 13/223 (5%)
Query: 70 YSCERKEVVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR 129
+ E+ S DG K+P+ I+ + A + LL YG + L + ++ +D
Sbjct: 459 FRVEQVFYPSKDGTKVPMFIVRRKDA--KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDS 516
Query: 130 GWVVAFADVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSA 189
G A A++RGGG +WH G K+N D + G++L+ G + L G S
Sbjct: 517 GGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSN 576
Query: 190 GCLLVGAAINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIR 249
G LL+GA N P LF AA V +D+ D + +++G P+ ++ + +R
Sbjct: 577 GGLLIGAVTNQRPDLFAAASPAVGVMDMLR--FD-QFTAGRYWVDDYGYPEKEADWRVLR 633
Query: 250 SYSPYDNI------PSVILKTNTTGGHF--GEGGRYSQCEETA 284
YSPY N+ P++++ T T G +Y+ +TA
Sbjct: 634 RYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTA 676
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 38/217 (17%)
Query: 67 SRLYSCERKEVVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSL 126
S Y E+KE S DGVKIP ++Y + ++ LL+AYG + +V++ + + +
Sbjct: 444 SENYVLEQKEATSFDGVKIPYFLVYKKGIKFDGKNPTLLEAYGGF-QVINAPYFS---RI 499
Query: 127 LDRGWV-----VAFADVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDK 181
+ WV A++RGGG WHK G+ ++ + +D + + L+ + +
Sbjct: 500 KNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEY 559
Query: 182 LCAIGYSAGCLLVGAAINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEF----- 236
L G S G LLV A+ P+LF A +VP LD+ + Y+EF
Sbjct: 560 LGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDM-------------IRYKEFGAGHS 606
Query: 237 -----GNPQIQSQFEYIRSYSPYDNI------PSVIL 262
G+P+I + +I+ Y+P +N+ P+V++
Sbjct: 607 WVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLI 643
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 93/204 (45%), Gaps = 5/204 (2%)
Query: 70 YSCERKEVVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR 129
Y E++ S DG ++PL I Y + L + +L YG + L + + LD
Sbjct: 423 YVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDL 482
Query: 130 GWVVAFADVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSA 189
G V A A++RGGG +WH G+ K+N D + +YL EGY D+L G S
Sbjct: 483 GGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSN 542
Query: 190 GCLLVGAAINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIR 249
G LLVGA P L A+ V LD + T Y+ + ++ F+Y++
Sbjct: 543 GGLLVGAVXTQRPDLXRVALPAVGVLDXLRYHTFTA--GTGWAYDYGTSADSEAXFDYLK 600
Query: 250 SYSPYDNI-PSVILKTN--TTGGH 270
YSP N+ P V + TT H
Sbjct: 601 GYSPLHNVRPGVSYPSTXVTTADH 624
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 93/204 (45%), Gaps = 5/204 (2%)
Query: 70 YSCERKEVVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR 129
Y E++ S DG ++PL I Y + L + +L YG + L + + LD
Sbjct: 423 YVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDL 482
Query: 130 GWVVAFADVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSA 189
G V A A++RGGG +WH G+ K+N D + +YL EGY D+L G S
Sbjct: 483 GGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSN 542
Query: 190 GCLLVGAAINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIR 249
G LLVGA P L A+ V LD + T Y+ + ++ F+Y++
Sbjct: 543 GGLLVGAVXTQRPDLXRVALPAVGVLDXLRYHTFTA--GTGWAYDYGTSADSEAXFDYLK 600
Query: 250 SYSPYDNI-PSVILKTN--TTGGH 270
YSP N+ P V + TT H
Sbjct: 601 GYSPLHNVRPGVSYPSTXVTTADH 624
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L YG + + + RL + G ++A A+
Sbjct: 443 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVAN 502
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G S G LLV A
Sbjct: 503 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAAC 562
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ + ++G + FE++ YSP N+
Sbjct: 563 ANQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNV 619
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 620 KLPEADDIQYPSMLLLT 636
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L YG + + + RL + G V+A A+
Sbjct: 444 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVAN 503
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G S G LLV
Sbjct: 504 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATC 563
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ + ++G + FE++ YSP N+
Sbjct: 564 ANQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGXSDSKQHFEWLIKYSPLHNV 620
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 621 KLPEADDIQYPSMLLLT 637
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L YG + + + RL + G V+A A+
Sbjct: 444 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVAN 503
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G S G LLV
Sbjct: 504 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATC 563
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ + ++G + FE++ YSP N+
Sbjct: 564 ANQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNV 620
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 621 KLPEADDIQYPSMLLLT 637
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L YG + + + RL + G V+A A+
Sbjct: 444 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVAN 503
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G S G LLV
Sbjct: 504 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATC 563
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ + ++G + FE++ YSP N+
Sbjct: 564 ANQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNV 620
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 621 KLPEADDIQYPSMLLLT 637
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L YG + + + RL + G V+A A+
Sbjct: 444 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVAN 503
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G S G LLV
Sbjct: 504 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATC 563
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ + ++G + FE++ YSP N+
Sbjct: 564 ANQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNV 620
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 621 KLPEADDIQYPSMLLLT 637
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L YG + + + RL + G V+A A+
Sbjct: 444 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVAN 503
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G S G LLV
Sbjct: 504 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATC 563
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ + ++G + FE++ YSP N+
Sbjct: 564 ANQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNV 620
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 621 KLPEADDIQYPSMLLLT 637
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L YG + + + RL + G V+A A+
Sbjct: 444 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVAN 503
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G S G LLV
Sbjct: 504 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATC 563
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ + ++G + FE++ YSP N+
Sbjct: 564 ANQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNV 620
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 621 KLPEADDIQYPSMLLLT 637
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L YG + + + RL + G V+A A+
Sbjct: 444 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVAN 503
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G S G LLV
Sbjct: 504 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATC 563
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ + ++G + FE++ YSP N+
Sbjct: 564 ANQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNV 620
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 621 KLPEADDIQYPSMLLLT 637
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L YG + + + RL + G V+A A+
Sbjct: 444 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVAN 503
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G S G LLV
Sbjct: 504 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATC 563
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ DY G + FE++ YSP N+
Sbjct: 564 ANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTCDY---GCSDSKQHFEWLIKYSPLHNV 620
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 621 KLPEADDIQYPSMLLLT 637
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L YG + + + RL + G V+A A+
Sbjct: 444 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVAN 503
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G + G LLV
Sbjct: 504 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGANGGLLVATC 563
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ + ++G + FE++ YSP N+
Sbjct: 564 ANQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNV 620
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 621 KLPEADDIQYPSMLLLT 637
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 79 SHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDR-GWVVAFAD 137
S DG KIP+ I++ + L L +G + + + RL + G V+A A+
Sbjct: 444 SKDGTKIPMFIVHKKGIKLDGSHPAFLYGFGGFNISITPNYSVSRLIFVRHMGGVLAVAN 503
Query: 138 VRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGAA 197
+RGGG +WHK G K+N D +YL+ EGY +L G S G LLV
Sbjct: 504 IRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATC 563
Query: 198 INMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDNI 257
N P LF I +V +D+ + ++G + FE++ YSP N+
Sbjct: 564 ANQRPDLFGCVIAQVGVMDMLKFH---KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNV 620
Query: 258 ----------PSVILKT 264
PS++L T
Sbjct: 621 KLPEADDIQYPSMLLLT 637
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 9/181 (4%)
Query: 77 VVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDRGWVVAFA 136
V S DG ++P +L S +A + +L A G + E D W T SL G+ V
Sbjct: 338 VESFDGSRVPTYVLESGRAPTPGPTV-VLVAGGPFAEDSDS-WDTFAASLAAAGFHVVMP 395
Query: 137 DVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGA 196
+ RG G W G + D+++ ++ G +L +GYS G +
Sbjct: 396 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLC 453
Query: 197 AINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDN 256
A+ M P LF A + +D M + L+ + F E +RS SP ++
Sbjct: 454 ALTMKPGLFKAGVAGASVVD-WEEMYE----LSDAAFRNFIEQLTGGSREIMRSRSPINH 508
Query: 257 I 257
+
Sbjct: 509 V 509
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 9/181 (4%)
Query: 77 VVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDRGWVVAFA 136
V S DG ++P +L S +A + L+ G + E D W T SL G+ V
Sbjct: 318 VESFDGSRVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 375
Query: 137 DVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGA 196
+ RG G W G + D+++ ++ G +L +GYS G +
Sbjct: 376 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLC 433
Query: 197 AINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDN 256
A+ M P LF A + +D M + L+ + F E +RS SP ++
Sbjct: 434 ALTMKPGLFKAGVAGASVVD-WEEMYE----LSDAAFRNFIEQLTGGSREIMRSRSPINH 488
Query: 257 I 257
+
Sbjct: 489 V 489
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 9/181 (4%)
Query: 77 VVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDRGWVVAFA 136
V S DG ++P +L S +A + L+ G + E D W T SL G+ V
Sbjct: 338 VESFDGSRVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 395
Query: 137 DVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGA 196
+ RG G W G + D+++ ++ G +L +GYS G +
Sbjct: 396 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLC 453
Query: 197 AINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDN 256
A+ M P LF A + +D M + L+ + F E +RS SP ++
Sbjct: 454 ALTMKPGLFKAGVAGASVVD-WEEMYE----LSDAAFRNFIEQLTGGSREIMRSRSPINH 508
Query: 257 I 257
+
Sbjct: 509 V 509
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 9/181 (4%)
Query: 77 VVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDRGWVVAFA 136
V S DG ++P +L S +A + L+ G + E D W T SL G+ V
Sbjct: 338 VESFDGSRVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 395
Query: 137 DVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGA 196
+ RG G W G + D+++ ++ G +L +GYS G +
Sbjct: 396 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLC 453
Query: 197 AINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDN 256
A+ M P LF A + +D M + L+ + F E +RS SP ++
Sbjct: 454 ALTMKPGLFKAGVAGASVVD-WEEMYE----LSDAAFRNFIEQLTGGSREIMRSRSPINH 508
Query: 257 I 257
+
Sbjct: 509 V 509
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 9/181 (4%)
Query: 77 VVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDRGWVVAFA 136
V S DG ++P +L S +A + L+ G + E D W T SL G+ V
Sbjct: 338 VESFDGSRVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 395
Query: 137 DVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGA 196
+ RG G W G + D+++ ++ G +L +GYS G +
Sbjct: 396 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLC 453
Query: 197 AINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDN 256
A+ M P LF A + +D M + L+ + F E +RS SP ++
Sbjct: 454 ALTMKPGLFKAGVAGASVVD-WEEMYE----LSDAAFRNFIEQLTGGSREIMRSRSPINH 508
Query: 257 I 257
+
Sbjct: 509 V 509
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 9/181 (4%)
Query: 77 VVSHDGVKIPLTILYSRKAWLRDQSSGLLQAYGAYGEVLDKGWCTDRLSLLDRGWVVAFA 136
V S DG ++P +L S +A + L+ G + E D W T SL G+ V
Sbjct: 338 VESFDGSRVPTYVLESGRAPTPGPTVVLVHG-GPFAEDSDS-WDTFAASLAAAGFHVVMP 395
Query: 137 DVRGGGGGDSSWHKFGSGLYKRNSIHDLTSCGKYLVNEGYVCKDKLCAIGYSAGCLLVGA 196
+ RG G W G + D+++ ++ G +L +GY+ G +
Sbjct: 396 NYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYAYGGYMTLC 453
Query: 197 AINMYPKLFCAAILKVPFLDICNTMLDPSLPLTKLDYEEFGNPQIQSQFEYIRSYSPYDN 256
A+ M P LF A + +D M + L+ + F E +RS SP ++
Sbjct: 454 ALTMKPGLFKAGVAGASVVD-WEEMYE----LSDAAFRNFIEQLTGGSREIMRSRSPINH 508
Query: 257 I 257
+
Sbjct: 509 V 509
>pdb|2HYU|A Chain A, Human Annexin A2 With Heparin Tetrasaccharide Bound
pdb|2HYV|A Chain A, Human Annexin A2 With Heparin Hexasaccharide Bound
pdb|2HYW|A Chain A, Human Annexin A2 With Calcium Bound
pdb|2HYW|B Chain B, Human Annexin A2 With Calcium Bound
Length = 308
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 235 EFGNPQIQSQFEYIRSYSPYDNIPSV 260
E P +Q F+ +SYSPYD + S+
Sbjct: 188 ERSVPHLQKVFDRYKSYSPYDMLESI 213
>pdb|1W7B|A Chain A, Annexin A2: Does It Induce Membrane Aggregation By A New
Multimeric State Of The Protein
Length = 339
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 235 EFGNPQIQSQFEYIRSYSPYDNIPSV 260
E P +Q F+ +SYSPYD + S+
Sbjct: 219 ERSVPHLQKVFDRYKSYSPYDMLESI 244
>pdb|1XJL|A Chain A, Structure Of Human Annexin A2 In The Presence Of Calcium
Ions
pdb|1XJL|B Chain B, Structure Of Human Annexin A2 In The Presence Of Calcium
Ions
Length = 319
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 235 EFGNPQIQSQFEYIRSYSPYDNIPSV 260
E P +Q F+ +SYSPYD + S+
Sbjct: 199 ERSVPHLQKVFDRYKSYSPYDMLESI 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,939,365
Number of Sequences: 62578
Number of extensions: 446827
Number of successful extensions: 894
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 39
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)