BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042283
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
++ IGD RG G G+E V D Q R +AET ++ + Q+G+++ G GNV
Sbjct: 342 RHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFT 401
Query: 59 PPLCFTKEDANYLVDVMD 76
PPL T+ D + +D++D
Sbjct: 402 PPLTITETDIHKALDLLD 419
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
++ IGD RG G G+E V D Q R +AET ++ + Q+G+++ G GNV
Sbjct: 355 RHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFT 414
Query: 59 PPLCFTKEDANYLVDVMD 76
PPL T+ D + +D++D
Sbjct: 415 PPLTITETDIHKALDLLD 432
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKA----ETLDVMDKMKQMGVLIGKGGF----YGNVFRI 57
+GD RG G ++G+E V D + ++ + V++ K+ G++IG+ G Y N+ +
Sbjct: 368 VGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGXTTAGYNNILTL 427
Query: 58 APPLCFTKEDANYLVDVM 75
APPL + E+ +++ +
Sbjct: 428 APPLVISSEEIAFVIGTL 445
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLRK----AETL--DVMDKMKQMGVLIGKGGFYGNVF 55
++ +GD RG G + VEFV D R A+ + + K+ + +I + G++
Sbjct: 371 QHANVGDVRGEGLLCAVEFVKDRDSRTFFDAADKIGPQISAKLLEQDKIIARAXPQGDIL 430
Query: 56 RIAPPLCFTKEDANYLVD 73
APP C T+ +A+ +V+
Sbjct: 431 GFAPPFCLTRAEADQVVE 448
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAE-------TLDVMDKMKQMGVLIGKGGFYGN 53
+++ IGD RG G +LGVE V D + ++ T + M+ M ++ G G
Sbjct: 344 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG--MGG 401
Query: 54 VFRIAPPLCFTKED 67
VFRIAPPL ++++
Sbjct: 402 VFRIAPPLTVSEDE 415
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAE-------TLDVMDKMKQMGVLIGKGGFYGN 53
+++ IGD RG G +LGVE V D + ++ T + M+ M ++ G G
Sbjct: 346 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG--MGG 403
Query: 54 VFRIAPPLCFTKED 67
VFRIAPPL ++++
Sbjct: 404 VFRIAPPLTVSEDE 417
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAE-------TLDVMDKMKQMGVLIGKGGFYGN 53
+++ IGD RG G +LGVE V D + ++ T + M+ M ++ G G
Sbjct: 345 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG--MGG 402
Query: 54 VFRIAPPLCFTKED 67
VFRIAPPL ++++
Sbjct: 403 VFRIAPPLTVSEDE 416
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAE-------TLDVMDKMKQMGVLIGKGGFYGN 53
+++ IGD RG G +LGVE V D + ++ T + M+ M ++ G G
Sbjct: 346 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG--MGG 403
Query: 54 VFRIAPPLCFTKED 67
VFRIAPPL ++++
Sbjct: 404 VFRIAPPLTVSEDE 417
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 6 IGDARGWGFMLGVEFVT------DSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
+GD RG G ML +E V +++L KA V + GV+I G YGNV R+ P
Sbjct: 377 VGDIRGRGAMLAIELVQPGSKEPNAELTKA----VAAACLKEGVIILTCGTYGNVIRLLP 432
Query: 60 PLCFTKE 66
PL + E
Sbjct: 433 PLVISDE 439
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRI 57
+K+ IGD RG G M+ +E D K + T +++ + + G+++ G Y NV RI
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399
Query: 58 APPLCFTKEDA 68
PL T EDA
Sbjct: 400 LVPL--TIEDA 408
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRI 57
+K+ IGD RG G M+ +E D K + T +++ + + G+++ G Y NV RI
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399
Query: 58 APPLCFTKEDA 68
PL T EDA
Sbjct: 400 LVPL--TIEDA 408
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRI 57
+K+ IGD RG G M+ +E D K + T +++ + + G+++ G Y NV RI
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399
Query: 58 APPLCFTKEDA 68
PL T EDA
Sbjct: 400 LVPL--TIEDA 408
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRI 57
+K+ IGD RG G M+ +E D K + T +++ + + G+++ G Y NV RI
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399
Query: 58 APPLCFTKEDA 68
PL T EDA
Sbjct: 400 LVPL--TIEDA 408
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 6 IGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
IG+ RG G ML +E V L A T + + GVLI G +GNV R+ PPL
Sbjct: 371 IGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPL 428
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 YGTIGDARGWGFMLGVEFVTDSQLR----KAETL--DVMDKMKQMGVLIGKGGFYGNVFR 56
+ +G+ RG G + VEFV D R ++ + V + GV IG+ G++
Sbjct: 373 HKNVGEVRGDGXLAAVEFVADKDDRVFFDASQKIGPQVATALAASGV-IGRAXPQGDILG 431
Query: 57 IAPPLCFTKEDANYLV 72
APPLC T+E A+ +V
Sbjct: 432 FAPPLCLTREQADIVV 447
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 6 IGDARGWGFMLGVEFVT------DSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
IGD RG G M+ +E V D+ L KA + GV++ G YGNV R P
Sbjct: 373 IGDVRGRGAMIAMELVKAGTTEPDADLTKA----LCAGAHAAGVIVLSCGTYGNVVRFLP 428
Query: 60 PLCFTKEDANYLVDVMD 76
PL + N +DV++
Sbjct: 429 PLSIGDDLLNEGLDVLE 445
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 6 IGDARGWGFMLGVEFVTD--SQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
+GD RG G M+ +E V ++ A T + GV++ G +GNV R+ PPL
Sbjct: 390 LGDVRGRGAMIAMELVKSGTAEPDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTI 449
Query: 64 TKEDANYLVDVM 75
+ E + +D++
Sbjct: 450 SDELLSEGLDIL 461
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
+GD R GFM G E V + ++ D V KM+++G+L G+V P
Sbjct: 364 VGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRP---LGDVIAFLP 420
Query: 60 PLCFTKEDANYLVDVM 75
PL T E+ + +V +M
Sbjct: 421 PLASTAEELSEMVAIM 436
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
+GD R GFM G E V + ++ D V KM+++G+L G+V P
Sbjct: 364 VGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRP---LGDVIAFLP 420
Query: 60 PLCFTKEDANYLVDVM 75
PL T E+ + +V +M
Sbjct: 421 PLASTAEELSEMVAIM 436
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMD---KMKQMGVLIGKGGFYGNVFRIAPPLC 62
+ D RG G + +EF K E ++V+D K+K+ G++ + R+ PPLC
Sbjct: 359 VRDVRGKGLLCAIEF-------KNELVNVLDICLKLKENGLITRD--VHDKTIRLTPPLC 409
Query: 63 FTKEDANYLVDVM 75
TKE + +++
Sbjct: 410 ITKEQLDECTEII 422
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 6 IGDARGWGFMLGVEFVT------DSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
IG+ RG G M+ VE V D+ L K V G+++ G YGNV R P
Sbjct: 374 IGEVRGRGAMIAVELVKPGTTEPDADLTKR----VAAAAHAQGLVVLTCGTYGNVLRFLP 429
Query: 60 PL 61
PL
Sbjct: 430 PL 431
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 32.7 bits (73), Expect = 0.057, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
+ + RG G + +EF D D+ K K+ G++ + R+ PPLC TK
Sbjct: 340 VREVRGKGLLCAIEFKNDL----VNVWDICLKFKENGLITRS--VHDKTVRLTPPLCITK 393
Query: 66 EDANYLVDVM 75
E + +++
Sbjct: 394 EQLDECTEII 403
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I + RG G +G+E ++ +++K G+L + + NV RIAPPL ++
Sbjct: 327 ITEVRGKGLFIGIELNEPAR-------PYCEQLKAAGLLCKET--HENVIRIAPPLVISE 377
Query: 66 EDANY 70
ED +
Sbjct: 378 EDLEW 382
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
+YG + RG G ++G D + + + + GV++ G GNV R AP L
Sbjct: 325 RYGLFSEVRGLGLLIGCVLNAD---YAGQAKQISQEAAKAGVMVLIAG--GNVVRFAPAL 379
Query: 62 CFTKEDANYLVD 73
++E+ +D
Sbjct: 380 NVSEEEVTTGLD 391
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
++Y + D RG G M+G++F + R+ T +K+ L+ G N R PP
Sbjct: 311 EEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKL-----LVVPAG--NNTIRFLPP 363
Query: 61 L 61
L
Sbjct: 364 L 364
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 28.5 bits (62), Expect = 0.91, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
++Y + D RG G +G++F + R+ T +K+ L+ G N R PP
Sbjct: 323 EEYDVVADVRGXGLXIGIQFREEVSNREVATKCFENKL-----LVVPAG--NNTIRFLPP 375
Query: 61 L 61
L
Sbjct: 376 L 376
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I + RG G M+G+E L++ + K+ VL + G V R PPL K
Sbjct: 329 IREVRGMGLMVGLE------LKEKAAPYIARLEKEHRVLALQAG--PTVIRFLPPLVIEK 380
Query: 66 EDANYLVDVM 75
ED +V+ +
Sbjct: 381 EDLERVVEAV 390
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
G D RG G G+E+ + ++R ++ + + G+L+ G + R+ PPL
Sbjct: 347 GLADDVRGIGLAWGLEY-NEKKVRDR----IIGESFKRGLLLLPAG--RSAIRVIPPLVI 399
Query: 64 TKEDANYLVDVM 75
++E+A +D++
Sbjct: 400 SEEEAKQGLDIL 411
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKA--ETLDVMDKMKQMGVLIGKGGF-YGNVFRIAPPLC 62
IG+ RG GFM +E V D + L V +++ +G F G + PP
Sbjct: 389 IGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICFPLGQSVVLCPPFI 448
Query: 63 FTKEDANYLVDVMDCSMTK 81
T+ + + D ++ ++ K
Sbjct: 449 LTEAQMDEMFDKLEKALDK 467
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,421,624
Number of Sequences: 62578
Number of extensions: 79578
Number of successful extensions: 253
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 29
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)