Query 042283
Match_columns 82
No_of_seqs 188 out of 1102
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0160 GabT 4-aminobutyrate a 99.9 3.1E-24 6.8E-29 151.2 9.8 81 1-81 362-445 (447)
2 KOG1404 Alanine-glyoxylate ami 99.8 7.5E-20 1.6E-24 126.6 8.8 75 1-75 354-432 (442)
3 COG0161 BioA Adenosylmethionin 99.8 1.3E-19 2.9E-24 127.7 9.8 77 2-81 363-443 (449)
4 COG4992 ArgD Ornithine/acetylo 99.8 1.5E-19 3.3E-24 125.7 8.4 73 2-81 326-398 (404)
5 PRK08742 adenosylmethionine--8 99.8 1.7E-18 3.6E-23 123.2 9.6 77 2-81 385-467 (472)
6 PRK06938 diaminobutyrate--2-ox 99.8 2.6E-18 5.6E-23 121.9 9.6 80 2-81 372-460 (464)
7 PRK07483 hypothetical protein; 99.8 3.8E-18 8.2E-23 120.5 9.9 80 2-81 347-437 (443)
8 TIGR00709 dat 2,4-diaminobutyr 99.8 5E-18 1.1E-22 119.7 9.8 80 2-81 347-435 (442)
9 PRK07495 4-aminobutyrate amino 99.8 1.1E-17 2.3E-22 117.7 10.1 80 2-81 340-421 (425)
10 PRK04013 argD acetylornithine/ 99.8 5.9E-18 1.3E-22 117.2 8.5 70 3-81 291-360 (364)
11 PRK06931 diaminobutyrate--2-ox 99.7 1E-17 2.2E-22 118.7 9.8 80 2-81 366-454 (459)
12 PRK05630 adenosylmethionine--8 99.7 8.7E-18 1.9E-22 118.1 9.0 73 2-82 349-421 (422)
13 PRK06082 4-aminobutyrate amino 99.7 1.3E-17 2.8E-22 118.2 9.4 78 2-81 371-451 (459)
14 PRK05965 hypothetical protein; 99.7 2E-17 4.2E-22 117.3 9.6 78 2-81 364-447 (459)
15 PRK05639 4-aminobutyrate amino 99.7 2.4E-17 5.3E-22 116.8 10.0 79 2-80 363-442 (457)
16 PRK06943 adenosylmethionine--8 99.7 2.2E-17 4.7E-22 116.9 9.7 77 2-81 370-446 (453)
17 PRK06149 hypothetical protein; 99.7 2.4E-17 5.1E-22 125.0 10.1 80 2-81 888-970 (972)
18 PRK06105 aminotransferase; Pro 99.7 3.2E-17 7E-22 116.2 9.7 77 2-81 367-449 (460)
19 PRK06058 4-aminobutyrate amino 99.7 6.6E-17 1.4E-21 114.0 10.2 80 2-81 361-442 (443)
20 PRK06917 hypothetical protein; 99.7 6.9E-17 1.5E-21 114.2 10.3 80 2-81 347-437 (447)
21 PRK07030 adenosylmethionine--8 99.7 8.6E-17 1.9E-21 114.3 9.7 77 2-81 364-446 (466)
22 PRK06148 hypothetical protein; 99.7 6.9E-17 1.5E-21 122.9 9.4 80 2-81 928-1010(1013)
23 PRK07480 putative aminotransfe 99.7 9.4E-17 2E-21 113.8 9.5 77 2-81 366-448 (456)
24 PRK07986 adenosylmethionine--8 99.7 7.7E-17 1.7E-21 113.5 9.0 72 2-81 352-423 (428)
25 PRK07481 hypothetical protein; 99.7 1.4E-16 3.1E-21 112.6 9.9 77 2-81 363-445 (449)
26 PRK12403 putative aminotransfe 99.7 1.3E-16 2.9E-21 113.1 9.7 77 2-81 370-452 (460)
27 PRK07036 hypothetical protein; 99.7 1.6E-16 3.5E-21 112.9 9.8 76 2-80 370-451 (466)
28 PRK07482 hypothetical protein; 99.7 1.4E-16 3.1E-21 112.9 9.3 79 2-81 370-454 (461)
29 PRK06916 adenosylmethionine--8 99.7 1.9E-16 4.1E-21 112.3 9.7 77 2-81 373-455 (460)
30 TIGR03372 putres_am_tran putre 99.7 1.8E-16 3.8E-21 112.2 8.6 73 2-79 369-442 (442)
31 PRK06173 adenosylmethionine--8 99.7 2.1E-16 4.5E-21 111.4 8.8 72 2-81 354-425 (429)
32 PLN02760 4-aminobutyrate:pyruv 99.7 3.3E-16 7.1E-21 112.3 9.8 76 2-80 409-490 (504)
33 PRK07678 aminotransferase; Val 99.7 4.7E-16 1E-20 110.0 10.3 80 2-81 362-449 (451)
34 PRK09221 beta alanine--pyruvat 99.7 5.6E-16 1.2E-20 109.6 9.6 77 2-81 367-443 (445)
35 KOG1403 Predicted alanine-glyo 99.7 3.8E-16 8.2E-21 106.4 7.9 80 1-80 353-436 (452)
36 PRK11522 putrescine--2-oxoglut 99.7 4.6E-16 9.9E-21 110.5 8.7 74 2-80 376-450 (459)
37 PRK08593 4-aminobutyrate amino 99.7 8.9E-16 1.9E-20 108.5 9.8 77 2-80 349-428 (445)
38 PRK09792 4-aminobutyrate trans 99.6 1.4E-15 3.1E-20 106.7 9.9 79 2-80 340-420 (421)
39 PRK06062 hypothetical protein; 99.6 1.1E-15 2.4E-20 108.2 9.3 77 2-81 360-445 (451)
40 PRK13360 omega amino acid--pyr 99.6 1.4E-15 3E-20 107.5 9.6 77 2-81 364-440 (442)
41 PRK06777 4-aminobutyrate amino 99.6 2E-15 4.4E-20 105.9 10.3 79 2-80 340-420 (421)
42 PRK04612 argD acetylornithine 99.6 1E-15 2.2E-20 107.2 8.8 74 2-80 329-402 (408)
43 PRK08360 4-aminobutyrate amino 99.6 1.6E-15 3.5E-20 107.2 9.7 77 2-80 346-425 (443)
44 KOG1402 Ornithine aminotransfe 99.6 5.8E-16 1.3E-20 106.1 6.9 75 3-80 351-426 (427)
45 PRK05769 4-aminobutyrate amino 99.6 3E-15 6.5E-20 105.7 9.6 78 2-81 361-439 (441)
46 PRK06541 hypothetical protein; 99.6 3.1E-15 6.7E-20 106.2 9.6 80 2-81 367-455 (460)
47 TIGR00699 GABAtrns_euk 4-amino 99.6 1.8E-15 3.9E-20 107.6 7.5 71 2-79 391-464 (464)
48 PLN02974 adenosylmethionine-8- 99.6 5.3E-15 1.2E-19 110.8 9.6 76 2-80 738-817 (817)
49 TIGR02407 ectoine_ectB diamino 99.6 8.1E-15 1.8E-19 102.7 8.9 75 2-81 337-412 (412)
50 PRK08117 4-aminobutyrate amino 99.6 3.3E-14 7.2E-19 99.9 10.0 79 2-80 349-428 (433)
51 PRK08297 L-lysine aminotransfe 99.6 2E-14 4.4E-19 101.6 8.0 73 2-81 368-441 (443)
52 TIGR00700 GABAtrnsam 4-aminobu 99.5 7.3E-14 1.6E-18 97.9 10.3 79 2-80 339-419 (420)
53 PRK06918 4-aminobutyrate amino 99.5 7.7E-14 1.7E-18 98.6 9.8 79 2-80 361-442 (451)
54 TIGR00508 bioA adenosylmethion 99.5 9.2E-14 2E-18 97.8 9.2 72 2-81 355-426 (427)
55 PRK05964 adenosylmethionine--8 99.5 1.3E-13 2.8E-18 96.6 9.5 75 2-81 348-422 (423)
56 PRK03715 argD acetylornithine 99.5 1.3E-13 2.8E-18 96.2 8.7 70 3-81 321-393 (395)
57 TIGR03251 LAT_fam L-lysine 6-t 99.5 1.5E-13 3.2E-18 96.8 7.5 70 2-78 361-431 (431)
58 PRK09264 diaminobutyrate--2-ox 99.5 2.4E-13 5.2E-18 95.6 8.3 74 2-80 341-415 (425)
59 PLN00144 acetylornithine trans 99.5 3.1E-13 6.7E-18 93.9 8.6 72 2-81 309-380 (382)
60 PRK08088 4-aminobutyrate amino 99.4 2.3E-12 5E-17 90.4 10.2 80 2-81 341-423 (425)
61 TIGR03246 arg_catab_astC succi 99.4 1.9E-12 4.2E-17 90.1 9.4 75 2-81 321-395 (397)
62 PRK12381 bifunctional succinyl 99.4 1.6E-12 3.5E-17 90.7 9.0 74 2-80 325-398 (406)
63 PLN02624 ornithine-delta-amino 99.4 6.1E-12 1.3E-16 89.7 9.3 76 2-80 367-443 (474)
64 PRK03244 argD acetylornithine 99.3 1.1E-11 2.5E-16 85.8 9.5 71 3-81 324-394 (398)
65 PRK04073 rocD ornithine--oxo-a 99.3 1.5E-11 3.3E-16 85.4 8.7 69 3-80 328-396 (396)
66 TIGR01885 Orn_aminotrans ornit 99.3 3.1E-11 6.7E-16 83.9 9.4 73 4-80 329-401 (401)
67 PRK01278 argD acetylornithine 99.3 2.9E-11 6.3E-16 83.6 8.8 71 2-81 317-388 (389)
68 PTZ00125 ornithine aminotransf 99.2 2.7E-10 5.9E-15 78.8 9.6 74 3-81 322-395 (400)
69 PRK04260 acetylornithine amino 99.1 3.5E-10 7.5E-15 78.0 8.2 69 2-79 307-375 (375)
70 PRK12389 glutamate-1-semialdeh 99.1 5.1E-10 1.1E-14 78.9 8.9 75 2-81 344-427 (428)
71 PRK02936 argD acetylornithine 99.1 4.8E-10 1E-14 77.1 8.4 69 2-79 309-377 (377)
72 PRK00854 rocD ornithine--oxo-a 99.1 8E-10 1.7E-14 76.7 9.4 70 5-80 331-400 (401)
73 PRK00062 glutamate-1-semialdeh 99.1 5.9E-10 1.3E-14 78.4 8.5 76 2-81 341-424 (426)
74 PRK02627 acetylornithine amino 99.1 1.3E-09 2.8E-14 75.2 8.7 70 3-81 325-394 (396)
75 PRK05093 argD bifunctional N-s 99.0 2.4E-09 5.3E-14 74.6 9.2 74 3-81 327-400 (403)
76 TIGR00713 hemL glutamate-1-sem 99.0 2.6E-09 5.6E-14 74.8 8.8 76 2-81 339-422 (423)
77 PRK07046 aminotransferase; Val 99.0 5.5E-09 1.2E-13 74.4 8.7 75 2-81 367-450 (453)
78 PLN03227 serine palmitoyltrans 98.9 2.2E-09 4.8E-14 74.9 6.0 80 2-81 282-382 (392)
79 KOG1405 4-aminobutyrate aminot 98.9 2.8E-09 6E-14 74.3 5.9 73 2-81 410-483 (484)
80 cd00610 OAT_like Acetyl ornith 98.9 2.3E-08 5E-13 69.1 9.1 75 3-79 336-413 (413)
81 PRK07505 hypothetical protein; 98.7 1.9E-07 4.1E-12 65.1 8.1 71 7-81 324-399 (402)
82 PLN02482 glutamate-1-semialdeh 98.6 6.2E-07 1.4E-11 64.4 8.6 72 3-81 393-473 (474)
83 PRK06209 glutamate-1-semialdeh 98.5 4.1E-07 8.9E-12 64.4 7.1 67 2-81 332-405 (431)
84 PRK00615 glutamate-1-semialdeh 98.5 8.7E-07 1.9E-11 63.0 8.4 73 3-81 348-428 (433)
85 TIGR00707 argD acetylornithine 98.5 1.2E-06 2.6E-11 60.1 7.9 64 7-79 316-379 (379)
86 PRK13393 5-aminolevulinate syn 98.3 2.7E-06 5.9E-11 59.3 7.4 69 8-81 322-396 (406)
87 PRK07179 hypothetical protein; 98.0 3.3E-05 7.1E-10 53.9 7.7 69 8-81 325-398 (407)
88 PRK05958 8-amino-7-oxononanoat 98.0 3.7E-05 8E-10 52.6 7.1 65 10-79 316-385 (385)
89 TIGR01821 5aminolev_synth 5-am 98.0 5.2E-05 1.1E-09 52.8 7.4 66 11-81 325-396 (402)
90 TIGR01825 gly_Cac_T_rel pyrido 97.8 9.9E-05 2.2E-09 50.7 6.7 51 31-81 326-381 (385)
91 PRK09064 5-aminolevulinate syn 97.8 0.00017 3.6E-09 50.3 7.3 64 12-80 327-396 (407)
92 KOG1401 Acetylornithine aminot 97.6 0.00016 3.5E-09 51.3 5.5 69 6-81 356-430 (433)
93 TIGR01814 kynureninase kynuren 97.5 0.00082 1.8E-08 47.0 7.8 61 11-80 345-406 (406)
94 PLN02721 threonine aldolase 97.4 0.0014 3.1E-08 44.3 7.9 64 13-81 289-352 (353)
95 TIGR03301 PhnW-AepZ 2-aminoeth 97.4 0.0014 2.9E-08 44.4 7.6 66 11-79 289-355 (355)
96 PRK13520 L-tyrosine decarboxyl 97.3 0.00099 2.2E-08 45.5 6.4 49 31-80 322-370 (371)
97 PRK06939 2-amino-3-ketobutyrat 97.3 0.0021 4.5E-08 44.2 7.6 66 11-81 323-393 (397)
98 PRK13392 5-aminolevulinate syn 97.3 0.0019 4.2E-08 45.1 7.5 52 30-81 340-397 (410)
99 cd00613 GDC-P Glycine cleavage 97.2 0.00067 1.4E-08 46.9 4.6 46 30-75 352-398 (398)
100 cd06451 AGAT_like Alanine-glyo 97.2 0.002 4.4E-08 43.8 6.6 50 31-80 304-356 (356)
101 cd06502 TA_like Low-specificit 97.1 0.0021 4.6E-08 43.3 6.1 38 39-78 301-338 (338)
102 TIGR00858 bioF 8-amino-7-oxono 97.0 0.0032 6.9E-08 42.6 6.3 60 12-76 296-360 (360)
103 PRK05937 8-amino-7-oxononanoat 97.0 0.0048 1.1E-07 42.7 7.0 50 31-80 299-349 (370)
104 cd06454 KBL_like KBL_like; thi 96.9 0.0044 9.5E-08 41.9 6.5 49 30-78 295-348 (349)
105 TIGR03812 tyr_de_CO2_Arch tyro 96.7 0.0063 1.4E-07 41.6 6.0 45 32-77 328-372 (373)
106 PLN02483 serine palmitoyltrans 96.7 0.013 2.9E-07 42.3 7.6 51 30-80 410-465 (489)
107 TIGR01822 2am3keto_CoA 2-amino 96.7 0.01 2.2E-07 41.0 6.7 52 30-81 333-389 (393)
108 TIGR03402 FeS_nifS cysteine de 96.6 0.0068 1.5E-07 41.8 5.6 50 31-80 301-371 (379)
109 PRK02731 histidinol-phosphate 96.5 0.024 5.3E-07 38.8 7.9 63 11-81 302-366 (367)
110 TIGR03392 FeS_syn_CsdA cystein 96.5 0.014 3.1E-07 40.5 6.5 50 31-80 335-394 (398)
111 TIGR01979 sufS cysteine desulf 96.5 0.022 4.8E-07 39.5 7.4 63 13-81 329-401 (403)
112 cd00609 AAT_like Aspartate ami 96.3 0.024 5.2E-07 37.8 6.7 61 9-76 285-349 (350)
113 PF12897 Aminotran_MocR: Alani 96.3 0.03 6.6E-07 40.0 7.3 60 13-79 346-413 (425)
114 PRK06225 aspartate aminotransf 96.3 0.04 8.6E-07 38.1 7.8 65 10-80 306-375 (380)
115 PRK10874 cysteine sulfinate de 96.2 0.026 5.6E-07 39.3 6.7 50 31-80 338-397 (401)
116 PRK03080 phosphoserine aminotr 96.2 0.026 5.7E-07 39.3 6.6 49 32-80 322-372 (378)
117 COG3844 Kynureninase [Amino ac 96.2 0.018 3.8E-07 40.5 5.5 50 30-81 352-402 (407)
118 TIGR02326 transamin_PhnW 2-ami 96.0 0.047 1E-06 37.4 6.9 50 31-80 311-361 (363)
119 cd06453 SufS_like Cysteine des 95.9 0.045 9.8E-07 37.5 6.6 59 11-75 305-373 (373)
120 TIGR01141 hisC histidinol-phos 95.8 0.061 1.3E-06 36.5 7.0 56 11-76 288-346 (346)
121 PRK02948 cysteine desulfurase; 95.8 0.031 6.6E-07 38.6 5.3 50 31-80 303-373 (381)
122 TIGR02539 SepCysS Sep-tRNA:Cys 95.7 0.033 7.1E-07 38.6 5.4 48 31-81 320-368 (370)
123 PRK00950 histidinol-phosphate 95.7 0.12 2.6E-06 35.3 7.9 59 13-80 299-361 (361)
124 TIGR03403 nifS_epsilon cystein 95.6 0.048 1E-06 37.7 5.7 50 31-80 304-374 (382)
125 PLN02822 serine palmitoyltrans 95.5 0.075 1.6E-06 38.4 6.6 51 30-80 418-476 (481)
126 PRK05355 3-phosphoserine/phosp 95.4 0.071 1.5E-06 37.1 6.1 50 32-81 309-358 (360)
127 TIGR01976 am_tr_V_VC1184 cyste 95.4 0.058 1.2E-06 37.3 5.6 45 31-75 340-397 (397)
128 PLN02855 Bifunctional selenocy 95.3 0.072 1.6E-06 37.5 6.0 50 31-80 357-417 (424)
129 PRK06108 aspartate aminotransf 95.3 0.13 2.8E-06 35.3 7.2 61 13-80 316-381 (382)
130 KOG3846 L-kynurenine hydrolase 95.3 0.12 2.5E-06 36.5 6.8 62 10-80 398-460 (465)
131 PRK13479 2-aminoethylphosphona 95.3 0.12 2.6E-06 35.4 6.9 51 31-81 312-363 (368)
132 TIGR01364 serC_1 phosphoserine 95.3 0.094 2E-06 36.4 6.3 51 31-81 298-348 (349)
133 PRK03317 histidinol-phosphate 95.2 0.12 2.5E-06 35.6 6.7 46 31-80 318-363 (368)
134 PRK14809 histidinol-phosphate 95.0 0.25 5.4E-06 33.9 7.7 59 11-80 296-356 (357)
135 PRK10534 L-threonine aldolase; 94.9 0.1 2.2E-06 35.3 5.7 46 31-80 287-332 (333)
136 PRK04366 glycine dehydrogenase 94.7 0.12 2.6E-06 37.4 5.9 51 30-80 394-447 (481)
137 PRK08153 histidinol-phosphate 94.6 0.35 7.7E-06 33.4 7.9 63 11-80 300-364 (369)
138 COG0001 HemL Glutamate-1-semia 94.6 0.33 7.1E-06 35.1 7.7 70 8-81 351-428 (432)
139 PRK05764 aspartate aminotransf 94.5 0.36 7.7E-06 33.4 7.6 49 31-81 340-391 (393)
140 PRK13034 serine hydroxymethylt 94.4 0.18 4E-06 35.7 6.2 50 32-81 331-392 (416)
141 PRK03158 histidinol-phosphate 94.4 0.35 7.7E-06 33.1 7.4 60 9-78 297-358 (359)
142 TIGR01437 selA_rel uncharacter 94.4 0.16 3.4E-06 35.4 5.6 49 30-79 313-363 (363)
143 PTZ00094 serine hydroxymethylt 94.4 0.14 3.1E-06 36.6 5.5 50 31-80 347-407 (452)
144 TIGR01366 serC_3 phosphoserine 94.3 0.23 5E-06 34.5 6.4 51 31-81 308-360 (361)
145 PRK09295 bifunctional cysteine 94.3 0.28 6.1E-06 34.2 6.9 49 31-79 344-402 (406)
146 PRK06959 putative threonine-ph 94.3 0.3 6.5E-06 33.5 6.8 47 31-80 286-332 (339)
147 PRK02610 histidinol-phosphate 94.1 0.46 9.9E-06 32.9 7.5 59 12-81 313-371 (374)
148 PRK05387 histidinol-phosphate 94.1 0.37 8E-06 32.8 6.9 47 31-80 304-352 (353)
149 PRK03321 putative aminotransfe 93.9 0.42 9E-06 32.6 6.9 57 12-80 294-350 (352)
150 PLN02955 8-amino-7-oxononanoat 93.9 0.44 9.6E-06 34.8 7.3 52 29-80 404-460 (476)
151 TIGR01977 am_tr_V_EF2568 cyste 93.8 0.33 7.2E-06 33.2 6.3 47 31-77 316-375 (376)
152 COG0520 csdA Selenocysteine ly 93.8 0.31 6.7E-06 34.7 6.2 63 12-80 332-404 (405)
153 cd06450 DOPA_deC_like DOPA dec 93.7 0.23 5E-06 33.6 5.3 49 30-78 294-345 (345)
154 cd00378 SHMT Serine-glycine hy 93.7 0.37 8E-06 33.4 6.4 50 32-81 324-385 (402)
155 COG0156 BioF 7-keto-8-aminopel 93.5 0.44 9.5E-06 34.0 6.6 50 29-78 333-387 (388)
156 PRK00451 glycine dehydrogenase 93.5 0.32 7E-06 34.4 6.0 49 31-79 393-446 (447)
157 PRK07682 hypothetical protein; 93.5 0.82 1.8E-05 31.5 7.8 49 31-81 323-376 (378)
158 TIGR03537 DapC succinyldiamino 93.3 0.47 1E-05 32.5 6.3 58 13-77 288-349 (350)
159 PF00266 Aminotran_5: Aminotra 93.2 0.56 1.2E-05 32.3 6.6 55 11-71 307-371 (371)
160 cd00611 PSAT_like Phosphoserin 92.9 0.51 1.1E-05 32.6 6.1 47 32-78 307-353 (355)
161 PRK06836 aspartate aminotransf 92.9 0.53 1.2E-05 32.8 6.3 49 31-81 341-391 (394)
162 PRK09331 Sep-tRNA:Cys-tRNA syn 92.8 0.45 9.9E-06 33.2 5.8 48 31-80 333-380 (387)
163 PRK15481 transcriptional regul 92.8 1.2 2.6E-05 31.4 7.9 61 12-80 365-430 (431)
164 PRK06425 histidinol-phosphate 92.8 0.76 1.7E-05 31.3 6.8 58 12-80 271-332 (332)
165 PRK01533 histidinol-phosphate 92.7 0.56 1.2E-05 32.6 6.2 44 32-81 312-355 (366)
166 PRK07324 transaminase; Validat 92.7 2 4.4E-05 29.8 8.8 49 31-81 319-370 (373)
167 cd06452 SepCysS Sep-tRNA:Cys-t 92.6 0.53 1.1E-05 32.3 5.8 46 32-79 315-360 (361)
168 COG1167 ARO8 Transcriptional r 92.5 1.3 2.8E-05 32.0 7.8 63 13-81 386-455 (459)
169 PRK07908 hypothetical protein; 92.1 0.6 1.3E-05 31.9 5.6 47 32-81 297-347 (349)
170 COG0079 HisC Histidinol-phosph 92.0 1 2.2E-05 31.6 6.7 48 31-81 304-354 (356)
171 PRK09440 avtA valine--pyruvate 92.0 1.1 2.3E-05 31.4 6.8 62 13-80 338-410 (416)
172 PRK05367 glycine dehydrogenase 91.9 0.51 1.1E-05 37.2 5.5 45 30-76 393-437 (954)
173 PRK04635 histidinol-phosphate 91.5 1.2 2.6E-05 30.6 6.5 44 32-78 307-352 (354)
174 PRK13580 serine hydroxymethylt 91.4 1.6 3.4E-05 32.2 7.4 50 31-80 383-444 (493)
175 PLN02414 glycine dehydrogenase 91.4 0.68 1.5E-05 36.8 5.7 43 32-76 422-464 (993)
176 PRK04870 histidinol-phosphate 91.2 1.2 2.7E-05 30.4 6.4 45 32-79 308-356 (356)
177 PRK07568 aspartate aminotransf 90.9 1.6 3.6E-05 30.2 6.9 47 32-80 332-391 (397)
178 PRK01688 histidinol-phosphate 90.7 1 2.3E-05 30.9 5.7 42 31-75 306-350 (351)
179 PRK07590 L,L-diaminopimelate a 90.7 1.5 3.2E-05 30.8 6.5 60 13-79 345-409 (409)
180 PRK09265 aminotransferase AlaT 90.7 2.7 5.8E-05 29.4 7.8 67 13-81 331-401 (404)
181 PRK05664 threonine-phosphate d 90.4 2 4.3E-05 29.3 6.8 48 31-81 281-328 (330)
182 TIGR01264 tyr_amTase_E tyrosin 90.2 2.7 5.9E-05 29.3 7.5 68 12-81 329-399 (401)
183 PRK06358 threonine-phosphate d 89.9 3.4 7.3E-05 28.4 7.7 45 32-79 305-353 (354)
184 PRK07683 aminotransferase A; V 89.7 2.6 5.6E-05 29.3 7.0 48 33-82 332-384 (387)
185 PRK06207 aspartate aminotransf 89.3 2.8 6.1E-05 29.4 7.0 63 13-81 335-402 (405)
186 PRK00011 glyA serine hydroxyme 89.2 1.6 3.5E-05 30.5 5.7 51 31-81 327-389 (416)
187 KOG1359 Glycine C-acetyltransf 88.9 2.9 6.3E-05 29.5 6.7 53 28-80 354-411 (417)
188 TIGR03542 DAPAT_plant LL-diami 88.8 2.6 5.7E-05 29.5 6.6 60 13-79 338-402 (402)
189 PRK04781 histidinol-phosphate 88.5 5.4 0.00012 27.6 7.9 59 11-80 301-362 (364)
190 PRK08056 threonine-phosphate d 88.2 3.4 7.4E-05 28.4 6.7 46 32-80 305-354 (356)
191 PRK08361 aspartate aminotransf 88.0 5.6 0.00012 27.6 7.8 63 13-81 323-390 (391)
192 PRK09105 putative aminotransfe 88.0 3.3 7.2E-05 28.7 6.6 47 31-80 322-369 (370)
193 PRK08912 hypothetical protein; 87.9 4 8.6E-05 28.3 7.0 65 13-81 315-386 (387)
194 PLN02409 serine--glyoxylate am 87.9 3.2 7E-05 29.1 6.6 50 32-81 320-372 (401)
195 PRK13355 bifunctional HTH-doma 87.8 2.5 5.4E-05 30.8 6.1 46 33-80 464-513 (517)
196 PRK14012 cysteine desulfurase; 87.8 0.99 2.1E-05 31.5 3.9 29 52-80 350-378 (404)
197 PLN00175 aminotransferase fami 87.5 2.6 5.6E-05 29.8 5.9 48 31-80 357-412 (413)
198 PLN00143 tyrosine/nicotianamin 87.5 3.1 6.7E-05 29.3 6.3 66 13-80 335-403 (409)
199 PRK08363 alanine aminotransfer 87.5 2.9 6.2E-05 29.1 6.1 46 34-81 345-394 (398)
200 PHA02771 hypothetical protein; 87.2 0.3 6.6E-06 28.0 0.9 36 32-73 7-42 (90)
201 PLN03026 histidinol-phosphate 87.1 6.7 0.00014 27.3 7.7 59 12-78 319-379 (380)
202 PRK05957 aspartate aminotransf 86.7 4.9 0.00011 28.0 6.9 62 13-80 318-384 (389)
203 TIGR02006 IscS cysteine desulf 86.7 1.2 2.6E-05 31.1 3.9 29 52-80 348-376 (402)
204 PTZ00433 tyrosine aminotransfe 86.5 3.7 8.1E-05 28.8 6.3 48 31-80 357-407 (412)
205 PRK07681 aspartate aminotransf 86.5 4.6 9.9E-05 28.2 6.6 58 13-77 322-384 (399)
206 PRK05367 glycine dehydrogenase 86.4 3.6 7.8E-05 32.7 6.6 51 30-80 823-874 (954)
207 PRK12566 glycine dehydrogenase 86.3 4.1 8.9E-05 32.5 6.8 51 31-81 825-876 (954)
208 cd00616 AHBA_syn 3-amino-5-hyd 86.0 2.5 5.4E-05 28.5 5.0 47 30-76 281-352 (352)
209 PF00155 Aminotran_1_2: Aminot 85.7 4.4 9.6E-05 27.5 6.2 45 30-75 316-363 (363)
210 TIGR03576 pyridox_MJ0158 pyrid 85.5 2.9 6.4E-05 29.0 5.3 47 32-80 294-346 (346)
211 PRK05839 hypothetical protein; 85.4 5.3 0.00012 27.7 6.5 58 13-80 309-373 (374)
212 KOG1368 Threonine aldolase [Am 84.9 6.4 0.00014 27.8 6.5 48 30-79 319-366 (384)
213 COG2008 GLY1 Threonine aldolas 84.8 3.5 7.6E-05 29.1 5.3 43 34-79 299-341 (342)
214 PRK14808 histidinol-phosphate 84.6 8.3 0.00018 26.4 7.1 55 11-77 279-333 (335)
215 PTZ00377 alanine aminotransfer 84.4 4.3 9.4E-05 29.2 5.9 44 35-80 426-474 (481)
216 PLN02187 rooty/superroot1 84.3 5.5 0.00012 28.7 6.3 45 34-80 391-437 (462)
217 PRK09147 succinyldiaminopimela 84.2 6.2 0.00013 27.4 6.5 60 12-80 325-395 (396)
218 PLN02414 glycine dehydrogenase 84.2 4.7 0.0001 32.3 6.3 50 31-80 856-906 (993)
219 PRK08175 aminotransferase; Val 83.8 12 0.00025 26.1 7.7 66 12-81 319-389 (395)
220 PRK06107 aspartate aminotransf 83.6 6.5 0.00014 27.5 6.4 48 32-81 350-400 (402)
221 PRK14807 histidinol-phosphate 83.5 8.1 0.00018 26.4 6.7 46 31-79 302-350 (351)
222 PRK07865 N-succinyldiaminopime 83.4 5.5 0.00012 27.3 5.9 43 32-76 317-363 (364)
223 PRK05166 histidinol-phosphate 83.4 8.5 0.00018 26.6 6.8 47 31-80 322-370 (371)
224 TIGR01265 tyr_nico_aTase tyros 83.2 12 0.00025 26.2 7.5 68 12-81 331-401 (403)
225 PRK06348 aspartate aminotransf 83.1 9.5 0.00021 26.5 7.0 60 13-78 318-382 (384)
226 TIGR00461 gcvP glycine dehydro 82.6 5.4 0.00012 31.7 6.0 44 31-76 383-426 (939)
227 TIGR01140 L_thr_O3P_dcar L-thr 82.5 12 0.00027 25.4 7.2 55 10-75 271-329 (330)
228 PRK12414 putative aminotransfe 81.3 13 0.00029 25.8 7.2 43 33-77 334-383 (384)
229 PRK07366 succinyldiaminopimela 81.3 5.8 0.00013 27.5 5.4 63 12-79 321-388 (388)
230 PLN02607 1-aminocyclopropane-1 81.3 12 0.00027 26.9 7.2 69 12-81 363-437 (447)
231 PRK09276 LL-diaminopimelate am 81.2 12 0.00026 25.8 7.0 58 13-77 322-384 (385)
232 PHA02772 hypothetical protein; 81.2 1.4 3.1E-05 25.5 1.9 37 32-74 7-43 (95)
233 PRK08354 putative aminotransfe 81.2 11 0.00024 25.3 6.6 44 32-78 264-309 (311)
234 PLN02656 tyrosine transaminase 81.1 8.1 0.00018 27.2 6.1 45 34-80 356-402 (409)
235 PRK07550 hypothetical protein; 80.5 11 0.00024 26.0 6.6 47 31-78 333-384 (386)
236 PRK08637 hypothetical protein; 80.3 9.8 0.00021 26.5 6.3 60 12-80 325-385 (388)
237 PLN00145 tyrosine/nicotianamin 80.1 7.9 0.00017 27.6 5.8 46 33-80 375-423 (430)
238 PRK15399 lysine decarboxylase 80.1 9.8 0.00021 29.5 6.5 47 30-78 510-556 (713)
239 PRK13578 ornithine decarboxyla 80.1 9.7 0.00021 29.5 6.5 46 31-78 517-562 (720)
240 PRK08960 hypothetical protein; 80.0 15 0.00032 25.5 7.1 63 12-80 318-386 (387)
241 PRK15400 lysine decarboxylase 79.8 10 0.00022 29.4 6.5 46 31-78 511-556 (714)
242 PF03979 Sigma70_r1_1: Sigma-7 79.6 0.5 1.1E-05 26.3 -0.3 43 30-77 8-50 (82)
243 PRK09148 aminotransferase; Val 78.6 12 0.00027 26.2 6.4 65 12-80 320-389 (405)
244 TIGR03540 DapC_direct LL-diami 78.3 16 0.00036 25.2 6.8 58 13-77 320-382 (383)
245 PRK07309 aromatic amino acid a 77.5 12 0.00027 26.0 6.1 48 32-81 336-388 (391)
246 PRK03967 histidinol-phosphate 77.4 15 0.00032 25.1 6.4 44 34-80 289-333 (337)
247 PRK06855 aminotransferase; Val 77.2 12 0.00026 26.6 6.0 45 36-81 382-429 (433)
248 TIGR03539 DapC_actino succinyl 77.2 10 0.00022 26.0 5.5 43 31-75 310-356 (357)
249 PF12575 DUF3753: Protein of u 77.0 4.1 8.9E-05 22.4 2.9 22 61-82 13-34 (72)
250 PRK09082 methionine aminotrans 77.0 16 0.00034 25.4 6.5 60 13-77 319-385 (386)
251 PRK08636 aspartate aminotransf 76.8 15 0.00034 25.6 6.4 66 12-81 330-400 (403)
252 PRK01777 hypothetical protein; 75.9 4.2 9.1E-05 23.4 2.9 23 50-72 66-88 (95)
253 PLN02724 Molybdenum cofactor s 75.4 18 0.00039 28.1 6.9 28 53-80 460-487 (805)
254 TIGR01365 serC_2 phosphoserine 75.3 19 0.00041 25.5 6.5 50 31-80 321-372 (374)
255 PRK07777 aminotransferase; Val 75.2 14 0.0003 25.6 5.8 48 31-80 330-385 (387)
256 PHA01624 hypothetical protein 74.5 3.4 7.3E-05 24.3 2.2 22 53-74 22-43 (102)
257 TIGR03538 DapC_gpp succinyldia 74.3 17 0.00037 25.3 6.1 58 12-78 324-392 (393)
258 PF02082 Rrf2: Transcriptional 73.8 12 0.00027 20.3 5.2 43 29-71 40-82 (83)
259 PHA02692 hypothetical protein; 73.2 6 0.00013 21.7 2.8 22 61-82 13-34 (70)
260 PRK15029 arginine decarboxylas 73.0 19 0.00042 28.1 6.5 46 31-78 556-601 (755)
261 cd03412 CbiK_N Anaerobic cobal 72.6 7.9 0.00017 23.1 3.6 27 52-78 100-126 (127)
262 PLN02376 1-aminocyclopropane-1 72.1 36 0.00078 24.9 7.7 68 12-80 363-437 (496)
263 PLN02231 alanine transaminase 71.0 17 0.00038 26.9 5.7 45 34-80 476-526 (534)
264 PRK02240 GTP cyclohydrolase II 70.8 27 0.00059 23.7 6.2 45 31-78 166-211 (254)
265 PHA02975 hypothetical protein; 70.7 7.4 0.00016 21.2 2.8 22 61-82 13-34 (69)
266 PRK11920 rirA iron-responsive 70.1 17 0.00037 22.4 4.8 45 29-73 39-83 (153)
267 PF05165 GGDN: GGDN family; I 69.3 24 0.00051 23.9 5.6 45 31-78 159-203 (246)
268 PF04688 Phage_holin: Phage ly 68.8 6.9 0.00015 19.7 2.4 18 58-75 2-19 (47)
269 TIGR00461 gcvP glycine dehydro 68.7 21 0.00046 28.6 6.0 49 30-78 815-864 (939)
270 PF14760 Rnk_N: Rnk N-terminus 68.1 2.8 6E-05 20.5 0.8 18 59-76 2-19 (42)
271 PHA02844 putative transmembran 68.1 8.7 0.00019 21.3 2.8 22 61-82 13-34 (75)
272 PF15603 Imm45: Immunity prote 67.9 10 0.00022 21.3 3.1 29 53-81 42-74 (82)
273 PLN02450 1-aminocyclopropane-1 67.8 44 0.00095 24.2 8.1 68 12-80 356-429 (468)
274 PF03147 FDX-ACB: Ferredoxin-f 67.5 6.5 0.00014 22.1 2.4 26 56-81 61-87 (94)
275 PRK06290 aspartate aminotransf 67.5 18 0.0004 25.6 5.1 51 31-81 353-405 (410)
276 COG0436 Aspartate/tyrosine/aro 67.1 21 0.00045 25.4 5.3 49 31-81 337-391 (393)
277 PF02786 CPSase_L_D2: Carbamoy 67.0 9 0.0002 24.9 3.3 30 50-79 120-149 (211)
278 PHA03054 IMV membrane protein; 65.4 11 0.00023 20.7 2.8 21 62-82 14-34 (72)
279 cd00454 Trunc_globin Truncated 65.2 9.2 0.0002 21.9 2.8 25 57-81 67-91 (116)
280 PHA02650 hypothetical protein; 64.8 11 0.00024 21.1 2.8 22 61-82 13-34 (81)
281 PF04864 Alliinase_C: Allinase 64.5 23 0.0005 25.3 5.0 43 33-77 316-361 (363)
282 PRK08068 transaminase; Reviewe 63.2 48 0.001 23.0 7.2 58 13-77 323-385 (389)
283 COG3977 Alanine-alpha-ketoisov 62.7 36 0.00079 24.3 5.6 49 30-80 351-410 (417)
284 KOG0634 Aromatic amino acid am 62.3 62 0.0013 24.0 8.3 70 11-81 384-466 (472)
285 PF07118 DUF1374: Protein of u 61.6 2.7 5.8E-05 24.2 0.0 20 54-73 22-41 (92)
286 cd04915 ACT_AK-Ectoine_2 ACT d 61.5 22 0.00047 18.5 5.5 49 30-80 17-65 (66)
287 PRK09275 aspartate aminotransf 61.5 28 0.00061 25.9 5.3 48 32-81 465-517 (527)
288 PF05889 SLA_LP_auto_ag: Solub 61.4 16 0.00035 26.3 3.8 51 30-80 326-389 (389)
289 TIGR01639 P_fal_TIGR01639 Plas 61.0 3.4 7.3E-05 21.8 0.3 19 62-80 9-27 (61)
290 TIGR02010 IscR iron-sulfur clu 60.9 29 0.00063 20.7 4.5 44 29-72 40-83 (135)
291 PF09885 DUF2112: Uncharacteri 59.7 2.3 5E-05 26.2 -0.5 16 57-72 41-56 (143)
292 TIGR03271 methan_mark_5 putati 59.6 2.4 5.1E-05 26.1 -0.5 16 57-72 40-55 (142)
293 PF14226 DIOX_N: non-haem diox 59.2 31 0.00067 19.5 4.3 40 28-79 14-53 (116)
294 PF01152 Bac_globin: Bacterial 58.6 12 0.00026 21.7 2.5 25 57-81 71-95 (120)
295 cd04866 LigD_Pol_like_3 LigD_P 58.5 53 0.0011 21.9 6.9 52 30-81 114-168 (223)
296 PTZ00376 aspartate aminotransf 58.3 33 0.00072 24.0 5.0 41 33-80 361-402 (404)
297 PF07131 DUF1382: Protein of u 57.9 21 0.00045 18.9 3.0 26 54-79 23-48 (61)
298 PLN03226 serine hydroxymethylt 57.4 31 0.00068 25.2 4.9 50 31-80 358-418 (475)
299 CHL00183 petJ cytochrome c553; 57.2 14 0.00031 21.1 2.6 21 57-77 80-102 (108)
300 PRK10857 DNA-binding transcrip 56.4 38 0.00081 21.2 4.6 45 29-73 40-84 (164)
301 PRK07337 aminotransferase; Val 56.1 65 0.0014 22.3 7.2 66 12-79 316-387 (388)
302 PRK13291 metal-dependent hydro 56.0 14 0.0003 23.2 2.6 24 57-80 11-34 (173)
303 KOG3363 Uncharacterized conser 54.9 18 0.0004 23.2 2.9 49 29-77 127-189 (196)
304 PRK11014 transcriptional repre 54.8 45 0.00097 20.0 4.8 45 29-73 40-84 (141)
305 PRK05942 aspartate aminotransf 54.2 72 0.0016 22.2 7.3 43 33-77 341-388 (394)
306 cd04924 ACT_AK-Arch_2 ACT doma 53.7 28 0.00061 17.3 5.0 50 29-80 16-65 (66)
307 COG1003 GcvP Glycine cleavage 53.4 46 0.00099 24.7 5.1 51 30-80 393-446 (496)
308 PRK09257 aromatic amino acid a 53.0 35 0.00075 23.8 4.4 39 34-79 358-396 (396)
309 TIGR00656 asp_kin_monofn aspar 51.6 75 0.0016 22.4 5.9 49 29-81 352-400 (401)
310 PHA02819 hypothetical protein; 51.6 25 0.00055 19.2 2.8 21 61-81 13-33 (71)
311 PRK05968 hypothetical protein; 51.4 59 0.0013 22.9 5.4 28 10-42 299-326 (389)
312 PLN02672 methionine S-methyltr 50.8 86 0.0019 25.8 6.6 48 31-80 1029-1079(1082)
313 COG1591 Holliday junction reso 50.3 59 0.0013 20.1 6.5 56 13-70 46-117 (137)
314 PF08895 DUF1840: Domain of un 50.3 21 0.00046 20.9 2.6 24 57-80 31-54 (105)
315 PRK07392 threonine-phosphate d 50.1 81 0.0018 21.6 8.4 60 11-80 294-358 (360)
316 TIGR03741 PRTRC_E PRTRC system 49.6 13 0.00027 21.9 1.5 18 56-73 42-61 (104)
317 cd04922 ACT_AKi-HSDH-ThrA_2 AC 49.5 34 0.00073 17.1 5.0 48 29-80 16-65 (66)
318 PF02896 PEP-utilizers_C: PEP- 49.5 28 0.00061 24.0 3.4 27 53-79 136-162 (293)
319 PF09749 HVSL: Uncharacterised 49.3 33 0.00072 22.6 3.7 28 52-79 89-116 (239)
320 PF08877 MepB: MepB protein; 49.1 26 0.00056 21.3 2.8 29 36-64 76-104 (123)
321 KOG2848 1-acyl-sn-glycerol-3-p 48.7 24 0.00051 24.3 2.9 28 53-80 222-252 (276)
322 PLN02452 phosphoserine transam 48.2 79 0.0017 22.3 5.6 50 30-79 312-361 (365)
323 PF13442 Cytochrome_CBB3: Cyto 47.8 27 0.0006 17.8 2.6 18 57-74 47-66 (67)
324 cd04916 ACT_AKiii-YclM-BS_2 AC 47.6 37 0.00079 16.9 5.1 50 29-80 16-65 (66)
325 cd04937 ACT_AKi-DapG-BS_2 ACT 46.8 40 0.00087 17.2 5.3 48 29-80 16-63 (64)
326 PF14258 DUF4350: Domain of un 45.4 45 0.00097 17.3 5.8 47 31-77 7-62 (70)
327 cd04918 ACT_AK1-AT_2 ACT domai 44.7 45 0.00097 17.1 5.1 46 30-79 16-63 (65)
328 PF04149 DUF397: Domain of unk 44.1 22 0.00047 18.3 1.8 20 57-76 36-55 (56)
329 TIGR03801 asp_4_decarbox aspar 44.0 88 0.0019 23.4 5.5 47 33-80 465-515 (521)
330 cd04923 ACT_AK-LysC-DapG-like_ 43.6 41 0.0009 16.4 5.2 47 29-79 15-61 (63)
331 PRK07810 O-succinylhomoserine 43.5 75 0.0016 22.6 4.9 13 10-22 312-324 (403)
332 KOG1358 Serine palmitoyltransf 43.4 1E+02 0.0022 22.7 5.5 51 30-80 406-464 (467)
333 cd04892 ACT_AK-like_2 ACT doma 43.3 41 0.00088 16.2 5.7 49 30-80 16-64 (65)
334 COG1959 Predicted transcriptio 43.3 61 0.0013 19.9 4.0 46 28-73 39-84 (150)
335 cd04920 ACT_AKiii-DAPDC_2 ACT 42.9 48 0.001 17.0 5.6 46 30-79 16-61 (63)
336 TIGR01592 holin_SPP1 holin, SP 42.9 32 0.00069 19.0 2.4 18 58-75 26-43 (75)
337 PF04914 DltD_C: DltD C-termin 42.8 76 0.0017 19.2 4.5 40 33-81 40-87 (130)
338 PRK06767 methionine gamma-lyas 42.6 38 0.00083 23.7 3.3 33 10-46 297-329 (386)
339 cd00520 RRF Ribosome recycling 42.4 82 0.0018 20.0 4.6 53 15-75 60-113 (179)
340 PF12646 DUF3783: Domain of un 42.2 32 0.0007 17.7 2.3 17 62-78 8-24 (58)
341 PLN03217 transcription factor 41.9 31 0.00067 19.7 2.2 18 62-79 16-33 (93)
342 cd04936 ACT_AKii-LysC-BS-like_ 41.3 46 0.00099 16.2 5.2 47 29-79 15-61 (63)
343 KOG2040 Glycine dehydrogenase 41.2 28 0.00061 27.4 2.6 44 31-77 867-914 (1001)
344 PF03460 NIR_SIR_ferr: Nitrite 41.2 53 0.0012 16.9 4.0 61 12-78 7-69 (69)
345 PRK13697 cytochrome c6; Provis 40.4 39 0.00085 19.1 2.7 21 57-77 82-104 (111)
346 TIGR01441 GPR GPR endopeptidas 40.3 21 0.00045 25.5 1.7 21 60-80 317-337 (358)
347 TIGR02647 DNA conserved hypoth 40.3 68 0.0015 17.9 3.5 19 31-49 36-54 (77)
348 PF03297 Ribosomal_S25: S25 ri 40.2 77 0.0017 18.6 3.8 28 29-56 74-101 (105)
349 PF08863 YolD: YolD-like prote 39.8 52 0.0011 17.9 3.1 22 60-81 20-41 (92)
350 TIGR03588 PseC UDP-4-keto-6-de 39.4 44 0.00094 23.1 3.2 49 31-79 309-380 (380)
351 PF11964 SpoIIAA-like: SpoIIAA 39.0 57 0.0012 18.1 3.2 27 54-80 2-28 (109)
352 TIGR03544 DivI1A_domain DivIVA 38.7 43 0.00094 15.2 2.2 17 62-78 17-33 (34)
353 PRK07582 cystathionine gamma-l 38.3 1.4E+02 0.003 20.8 7.1 12 10-21 289-300 (366)
354 PF01053 Cys_Met_Meta_PP: Cys/ 38.1 1.5E+02 0.0032 21.2 6.1 27 8-38 297-323 (386)
355 PF13991 BssS: BssS protein fa 38.1 45 0.00098 18.4 2.5 25 56-80 35-59 (73)
356 COG2429 Archaeal GTP cyclohydr 37.9 1.3E+02 0.0028 20.4 5.4 43 32-77 164-206 (250)
357 COG4273 Uncharacterized conser 37.6 55 0.0012 20.1 3.0 48 34-81 80-129 (135)
358 PRK09334 30S ribosomal protein 37.6 80 0.0017 17.9 3.6 21 29-49 56-76 (86)
359 PF06153 DUF970: Protein of un 37.4 64 0.0014 19.1 3.2 48 30-80 12-65 (109)
360 TIGR00738 rrf2_super rrf2 fami 37.3 80 0.0017 18.3 3.8 18 30-47 41-58 (132)
361 PF08544 GHMP_kinases_C: GHMP 36.8 67 0.0015 16.9 6.0 45 31-79 36-83 (85)
362 PRK12362 germination protease; 36.4 26 0.00055 24.7 1.6 21 60-80 285-305 (318)
363 COG1460 Uncharacterized protei 36.3 55 0.0012 19.6 2.9 19 62-80 95-113 (114)
364 PF02347 GDC-P: Glycine cleava 35.9 71 0.0015 23.4 3.9 44 30-75 386-429 (429)
365 cd07991 LPLAT_LPCAT1-like Lyso 35.9 31 0.00068 22.0 1.9 29 53-81 166-196 (211)
366 PF03830 PTSIIB_sorb: PTS syst 35.9 1.1E+02 0.0023 18.9 4.3 35 43-77 101-135 (151)
367 PF05724 TPMT: Thiopurine S-me 35.8 7.3 0.00016 25.5 -1.0 45 29-73 136-180 (218)
368 cd04910 ACT_AK-Ectoine_1 ACT d 35.8 76 0.0017 17.2 7.9 49 29-79 16-64 (71)
369 PLN02397 aspartate transaminas 35.7 1.1E+02 0.0024 21.7 4.8 41 33-80 379-420 (423)
370 PRK12566 glycine dehydrogenase 35.6 1.7E+02 0.0037 23.8 6.1 44 31-76 396-439 (954)
371 PRK08210 aspartate kinase I; R 35.5 1.6E+02 0.0035 20.8 5.8 48 29-80 354-401 (403)
372 cd03414 CbiX_SirB_C Sirohydroc 35.3 66 0.0014 18.3 3.1 27 53-79 91-117 (117)
373 cd04861 LigD_Pol_like LigD_Pol 35.3 1.4E+02 0.003 20.0 7.5 52 30-81 119-172 (227)
374 COG5310 Homospermidine synthas 35.2 40 0.00087 24.4 2.4 36 4-46 79-114 (481)
375 PF03874 RNA_pol_Rpb4: RNA pol 35.1 50 0.0011 19.0 2.6 16 63-78 101-116 (117)
376 TIGR03687 pupylate_cterm ubiqu 35.0 44 0.00095 15.5 1.8 15 66-80 3-17 (33)
377 PF01863 DUF45: Protein of unk 34.7 77 0.0017 19.8 3.6 28 52-79 10-37 (205)
378 cd04862 PaeLigD_Pol_like PaeLi 34.7 1.4E+02 0.0031 20.0 7.5 51 31-81 120-172 (227)
379 TIGR02944 suf_reg_Xantho FeS a 34.7 98 0.0021 18.1 4.2 41 29-70 40-81 (130)
380 cd04917 ACT_AKiii-LysC-EC_2 AC 34.5 67 0.0015 16.2 5.3 46 30-79 17-62 (64)
381 TIGR03531 selenium_SpcS O-phos 34.3 30 0.00065 25.3 1.8 25 55-79 420-444 (444)
382 PF08154 NLE: NLE (NUC135) dom 34.3 55 0.0012 17.2 2.4 20 57-76 20-39 (65)
383 COG4064 MtrG Tetrahydromethano 34.2 60 0.0013 17.8 2.5 21 58-78 7-27 (75)
384 PF08164 TRAUB: Apoptosis-anta 34.2 40 0.00087 18.9 1.9 22 54-75 58-82 (83)
385 TIGR03840 TMPT_Se_Te thiopurin 33.9 51 0.0011 21.4 2.7 44 30-73 134-177 (213)
386 PF10306 FLILHELTA: Hypothetic 33.9 59 0.0013 18.4 2.6 26 57-82 52-77 (86)
387 TIGR03045 PS_II_C550 cytochrom 33.8 45 0.00098 21.0 2.3 20 57-76 125-145 (159)
388 PF11212 DUF2999: Protein of u 33.7 49 0.0011 18.3 2.2 17 61-77 11-27 (82)
389 PLN02788 phenylalanine-tRNA sy 33.6 41 0.00089 24.4 2.3 24 59-82 373-396 (402)
390 PRK06474 hypothetical protein; 33.6 44 0.00094 21.2 2.3 23 58-80 131-153 (178)
391 COG3882 FkbH Predicted enzyme 33.1 51 0.0011 24.9 2.8 56 15-70 243-304 (574)
392 CHL00133 psbV photosystem II c 33.1 47 0.001 21.1 2.3 20 57-76 126-146 (163)
393 PF01698 FLO_LFY: Floricaula / 32.8 15 0.00031 26.5 0.0 19 61-79 79-97 (386)
394 COG4050 Uncharacterized protei 32.7 14 0.0003 22.6 -0.1 16 57-72 45-60 (152)
395 TIGR02066 dsrB sulfite reducta 32.6 1E+02 0.0022 21.7 4.1 37 41-77 17-55 (341)
396 COG1982 LdcC Arginine/lysine/o 32.5 1.5E+02 0.0033 22.5 5.2 46 30-76 357-403 (557)
397 PRK14981 DNA-directed RNA poly 32.4 58 0.0012 19.1 2.5 17 62-78 94-110 (112)
398 PF13840 ACT_7: ACT domain ; P 32.3 79 0.0017 16.3 4.1 45 28-77 21-65 (65)
399 PF06837 Fijivirus_P9-2: Fijiv 31.6 43 0.00093 22.0 2.0 21 62-82 45-65 (214)
400 COG1514 LigT 2'-5' RNA ligase 31.6 1.4E+02 0.003 19.0 4.7 63 14-80 3-65 (180)
401 COG1105 FruK Fructose-1-phosph 31.3 57 0.0012 22.8 2.7 51 30-80 63-128 (310)
402 PF07820 TraC: TraC-like prote 31.3 77 0.0017 18.3 2.8 35 31-80 26-60 (92)
403 PRK02858 germination protease; 31.3 38 0.00083 24.3 1.8 21 60-80 328-348 (369)
404 TIGR02912 sulfite_red_C sulfit 30.9 1.8E+02 0.0039 19.9 5.3 46 28-78 34-80 (314)
405 PF15614 WHIM3: WSTF, HB1, Itc 30.9 60 0.0013 16.2 2.1 15 61-75 3-17 (46)
406 PRK13255 thiopurine S-methyltr 30.6 62 0.0013 21.0 2.7 42 31-73 138-180 (218)
407 PF14852 Fis1_TPR_N: Fis1 N-te 30.5 67 0.0014 14.9 2.2 17 64-80 16-32 (35)
408 PF09827 CRISPR_Cas2: CRISPR a 30.4 92 0.002 16.5 5.5 52 15-80 5-56 (78)
409 PF12005 DUF3499: Protein of u 30.4 90 0.0019 19.0 3.1 33 44-78 51-86 (123)
410 PF04604 L_biotic_typeA: Type- 30.4 41 0.00089 17.2 1.4 12 63-74 15-26 (51)
411 PF00408 PGM_PMM_IV: Phosphogl 30.2 91 0.002 16.4 4.5 39 39-79 32-72 (73)
412 PF08112 ATP-synt_E_2: ATP syn 30.2 49 0.0011 17.1 1.7 20 63-82 4-23 (56)
413 COG0068 HypF Hydrogenase matur 30.0 1.7E+02 0.0036 23.2 5.1 57 8-77 2-58 (750)
414 TIGR00469 pheS_mito phenylalan 29.8 51 0.0011 24.4 2.3 23 59-81 432-454 (460)
415 PF08804 gp32: gp32 DNA bindin 29.7 19 0.0004 20.9 0.1 10 51-60 15-24 (94)
416 PRK01026 tetrahydromethanopter 29.5 77 0.0017 17.7 2.5 21 58-78 7-27 (77)
417 PF01408 GFO_IDH_MocA: Oxidore 29.3 1.1E+02 0.0024 17.1 4.4 36 32-77 76-111 (120)
418 PRK06228 F0F1 ATP synthase sub 29.3 1.4E+02 0.003 18.1 4.0 30 51-80 72-101 (131)
419 COG4123 Predicted O-methyltran 29.2 17 0.00037 24.5 -0.1 16 52-67 215-230 (248)
420 PF12224 Amidoligase_2: Putati 29.2 61 0.0013 21.1 2.5 25 54-78 78-104 (252)
421 cd04863 MtLigD_Pol_like MtLigD 29.1 1.8E+02 0.004 19.5 7.5 51 31-81 124-176 (231)
422 TIGR02778 ligD_pol DNA polymer 29.1 1.9E+02 0.0041 19.6 7.5 51 30-80 135-187 (245)
423 COG2378 Predicted transcriptio 28.7 69 0.0015 22.1 2.8 22 57-78 70-91 (311)
424 COG1104 NifS Cysteine sulfinat 28.6 1.1E+02 0.0025 22.1 3.9 29 52-80 348-376 (386)
425 COG1889 NOP1 Fibrillarin-like 28.6 68 0.0015 21.5 2.6 32 4-41 92-123 (231)
426 PRK12462 phosphoserine aminotr 28.5 2.2E+02 0.0048 20.3 6.2 50 29-78 310-359 (364)
427 KOG3460 Small nuclear ribonucl 28.3 59 0.0013 18.4 1.9 12 52-63 79-90 (91)
428 cd03067 PDI_b_PDIR_N PDIb fami 28.2 64 0.0014 19.2 2.2 16 7-22 45-60 (112)
429 TIGR00135 gatC glutamyl-tRNA(G 28.1 94 0.002 17.3 2.8 20 61-80 15-34 (93)
430 TIGR01149 mtrG N5-methyltetrah 27.8 87 0.0019 17.1 2.5 20 59-78 5-24 (70)
431 PLN02757 sirohydrochlorine fer 27.8 1.3E+02 0.0029 18.6 3.7 28 54-81 107-134 (154)
432 KOG0259 Tyrosine aminotransfer 27.5 2.5E+02 0.0054 20.7 5.4 45 34-80 386-432 (447)
433 PF08479 POTRA_2: POTRA domain 27.5 89 0.0019 16.5 2.6 20 62-81 30-49 (76)
434 TIGR02117 chp_urease_rgn conse 27.3 58 0.0013 21.4 2.1 22 59-80 124-145 (208)
435 PF09601 DUF2459: Protein of u 27.3 67 0.0014 20.4 2.3 22 60-81 95-116 (173)
436 PF10524 NfI_DNAbd_pre-N: Nucl 27.0 69 0.0015 15.7 1.8 17 59-75 1-17 (44)
437 COG0403 GcvP Glycine cleavage 26.9 2.7E+02 0.0058 20.7 5.8 49 29-79 400-448 (450)
438 TIGR02542 B_forsyth_147 Bacter 26.8 89 0.0019 19.1 2.6 17 57-73 80-96 (145)
439 PRK08045 cystathionine gamma-s 26.8 1.3E+02 0.0028 21.3 3.9 13 9-21 293-305 (386)
440 PRK09947 hypothetical protein; 26.8 75 0.0016 21.1 2.5 26 52-77 145-170 (215)
441 PF01448 ELM2: ELM2 domain; I 26.7 95 0.0021 15.4 3.5 25 52-76 28-52 (55)
442 PF14574 DUF4445: Domain of un 26.6 1.4E+02 0.0031 21.7 4.1 42 33-74 245-306 (412)
443 PRK07269 cystathionine gamma-s 26.6 1.1E+02 0.0023 21.5 3.4 20 2-21 267-288 (364)
444 KOG4065 Uncharacterized conser 26.6 77 0.0017 19.4 2.3 19 58-76 105-123 (144)
445 PF09551 Spore_II_R: Stage II 26.2 23 0.00049 21.7 0.1 12 55-66 115-126 (130)
446 TIGR01329 cysta_beta_ly_E cyst 26.2 1.4E+02 0.0031 20.9 4.0 33 10-47 288-320 (378)
447 PRK15018 1-acyl-sn-glycerol-3- 26.1 90 0.002 20.7 2.9 28 53-80 196-226 (245)
448 PF13113 DUF3970: Protein of u 26.0 75 0.0016 16.8 2.0 15 63-77 8-22 (60)
449 cd07983 LPLAT_DUF374-like Lyso 26.0 1.2E+02 0.0025 18.8 3.3 27 54-80 158-188 (189)
450 PF08672 APC2: Anaphase promot 26.0 94 0.002 16.2 2.4 19 59-77 29-47 (60)
451 cd00617 Tnase_like Tryptophana 25.9 2.6E+02 0.0057 20.3 5.8 30 52-81 378-408 (431)
452 COG4408 Uncharacterized protei 25.7 1.8E+02 0.004 21.1 4.4 43 31-73 184-232 (431)
453 COG5423 Predicted metal-bindin 25.5 93 0.002 19.7 2.6 22 58-79 51-72 (167)
454 PRK00034 gatC aspartyl/glutamy 25.4 1.1E+02 0.0024 16.9 2.8 20 61-80 17-36 (95)
455 PF09702 Cas_Csa5: CRISPR-asso 25.4 1.4E+02 0.003 17.7 3.2 23 56-78 66-88 (105)
456 CHL00123 rps6 ribosomal protei 25.3 1.4E+02 0.003 16.9 3.7 25 55-81 12-36 (97)
457 COG2873 MET17 O-acetylhomoseri 24.7 2.9E+02 0.0063 20.3 6.5 65 9-81 336-425 (426)
458 cd04925 ACT_ACR_2 ACT domain-c 24.6 1.2E+02 0.0026 15.9 5.4 52 29-80 12-73 (74)
459 TIGR01828 pyru_phos_dikin pyru 24.6 1.1E+02 0.0024 24.4 3.5 27 54-80 695-721 (856)
460 PF02881 SRP54_N: SRP54-type p 24.3 1.2E+02 0.0026 15.8 2.9 20 61-80 16-35 (75)
461 PRK09894 diguanylate cyclase; 24.1 2.1E+02 0.0046 18.6 5.9 43 34-80 192-234 (296)
462 PF11791 Aconitase_B_N: Aconit 24.1 76 0.0016 20.0 2.1 20 58-77 14-33 (154)
463 TIGR00854 pts-sorbose PTS syst 24.0 1.5E+02 0.0032 18.3 3.4 28 50-77 108-135 (151)
464 PF11115 DUF2623: Protein of u 24.0 26 0.00057 20.2 0.0 31 11-46 6-38 (95)
465 cd04921 ACT_AKi-HSDH-ThrA-like 23.9 1.2E+02 0.0026 15.7 6.5 49 29-79 16-64 (80)
466 cd04919 ACT_AK-Hom3_2 ACT doma 23.7 1.1E+02 0.0024 15.2 6.3 48 29-80 16-65 (66)
467 PF00034 Cytochrom_C: Cytochro 23.6 1E+02 0.0023 15.7 2.4 16 62-77 74-89 (91)
468 cd04865 LigD_Pol_like_2 LigD_P 23.5 2.4E+02 0.0052 18.9 7.5 50 31-80 121-172 (228)
469 cd01207 Ena-Vasp Enabled-VASP- 23.5 1E+02 0.0022 18.2 2.5 18 64-81 92-109 (111)
470 PF04210 MtrG: Tetrahydrometha 23.4 1E+02 0.0022 16.9 2.2 21 58-78 4-24 (70)
471 cd01206 Homer Homer type EVH1 23.4 1E+02 0.0023 18.4 2.5 18 64-81 92-109 (111)
472 KOG3191 Predicted N6-DNA-methy 23.3 38 0.00082 22.3 0.7 17 51-67 110-126 (209)
473 COG1509 KamA Lysine 2,3-aminom 23.3 73 0.0016 22.9 2.1 18 60-77 169-186 (369)
474 PF10415 FumaraseC_C: Fumarase 23.0 38 0.00082 17.4 0.5 38 29-74 12-49 (55)
475 PRK06635 aspartate kinase; Rev 23.0 2.8E+02 0.006 19.5 5.2 48 29-80 355-402 (404)
476 cd04868 ACT_AK-like ACT domain 22.9 99 0.0021 14.3 5.1 44 30-75 16-59 (60)
477 PRK13679 hypothetical protein; 22.8 1.9E+02 0.0042 17.7 6.6 29 52-80 32-60 (168)
478 PF02268 TFIIA_gamma_N: Transc 22.7 1.2E+02 0.0026 15.3 2.4 18 63-80 28-45 (49)
479 COG1180 PflA Pyruvate-formate 22.5 2.5E+02 0.0054 18.8 6.1 40 32-77 162-201 (260)
480 PF09312 SurA_N: SurA N-termin 22.4 95 0.0021 18.0 2.2 18 61-78 65-82 (118)
481 cd00001 PTS_IIB_man PTS_IIB, P 22.0 1.8E+02 0.0038 17.9 3.5 28 50-77 107-134 (151)
482 PLN02639 oxidoreductase, 2OG-F 22.0 2.8E+02 0.0061 19.2 5.8 41 28-80 49-89 (337)
483 PRK14839 undecaprenyl pyrophos 21.9 2.2E+02 0.0047 19.2 4.0 44 30-80 41-86 (239)
484 PRK13256 thiopurine S-methyltr 21.9 1.3E+02 0.0029 19.9 3.0 44 29-73 144-187 (226)
485 PF02560 Cyanate_lyase: Cyanat 21.7 86 0.0019 17.3 1.8 14 9-22 33-46 (73)
486 PRK11658 UDP-4-amino-4-deoxy-L 21.7 1.5E+02 0.0033 20.6 3.4 20 61-80 359-378 (379)
487 TIGR01394 TypA_BipA GTP-bindin 21.7 65 0.0014 24.4 1.7 22 51-72 546-567 (594)
488 PF04136 Sec34: Sec34-like fam 21.5 1.1E+02 0.0023 19.0 2.4 22 59-80 88-109 (157)
489 PF04695 Pex14_N: Peroxisomal 21.5 70 0.0015 19.3 1.6 15 63-77 35-49 (136)
490 KOG0629 Glutamate decarboxylas 21.4 2.2E+02 0.0047 21.4 4.2 48 30-78 454-506 (510)
491 PF07555 NAGidase: beta-N-acet 21.3 2.9E+02 0.0064 19.2 6.0 42 31-80 58-102 (306)
492 TIGR02837 spore_II_R stage II 21.3 40 0.00087 21.6 0.5 12 55-66 150-161 (168)
493 PF07637 PSD5: Protein of unkn 21.3 1.4E+02 0.0031 15.5 2.9 18 63-80 19-36 (64)
494 PRK10240 undecaprenyl pyrophos 21.2 2.6E+02 0.0057 18.6 4.7 45 29-80 24-70 (229)
495 PRK11061 fused phosphoenolpyru 21.2 1.3E+02 0.0029 23.5 3.3 28 53-80 550-577 (748)
496 cd04891 ACT_AK-LysC-DapG-like_ 21.0 1.1E+02 0.0025 14.3 4.5 44 30-75 14-60 (61)
497 COG4019 Uncharacterized protei 20.9 70 0.0015 19.8 1.4 18 57-74 126-143 (156)
498 PF01978 TrmB: Sugar-specific 20.9 1.4E+02 0.003 15.3 3.4 31 29-60 37-67 (68)
499 cd00559 Cyanase_C Cyanase C-te 20.8 79 0.0017 17.2 1.5 13 10-22 30-42 (69)
500 KOG2040 Glycine dehydrogenase 20.6 3.2E+02 0.0069 22.0 5.0 45 30-76 434-478 (1001)
No 1
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.91 E-value=3.1e-24 Score=151.17 Aligned_cols=81 Identities=32% Similarity=0.578 Sum_probs=74.7
Q ss_pred CCCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 1 DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 1 ~~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
++||.|+||||+|||+||||+++..++ .+.+.+++..|+++||++..||.++|+|||.|||+||++|+|+++++|++
T Consensus 362 ~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~ 441 (447)
T COG0160 362 EKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEE 441 (447)
T ss_pred hhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHH
Confidence 468999999999999999999876543 57889999999999999999999999999999999999999999999999
Q ss_pred hHhc
Q 042283 78 SMTK 81 (82)
Q Consensus 78 ~l~~ 81 (82)
+|.+
T Consensus 442 al~~ 445 (447)
T COG0160 442 ALKE 445 (447)
T ss_pred HHHh
Confidence 9874
No 2
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=99.82 E-value=7.5e-20 Score=126.63 Aligned_cols=75 Identities=55% Similarity=0.920 Sum_probs=65.5
Q ss_pred CCCCceeeecccceEEEEEeeeCCCCc----hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 1 DKYGTIGDARGWGFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 1 ~~~~~v~~vRg~Glm~gie~~~~~~~~----~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
++||.|+||||+|||+|+|+++++... ...+..+.+.|.++|+++...+.++|++|+.||||||++|+|.+++..
T Consensus 354 d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 354 DKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred hcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 478999999999999999999887322 345677889999999999888889999999999999999998888855
No 3
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.81 E-value=1.3e-19 Score=127.67 Aligned_cols=77 Identities=29% Similarity=0.473 Sum_probs=69.7
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc----hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~----~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
+||.|+||||+|||.|||++.+++++ ...+.++.+.++++||++|+. ++++.++|||+||++|+|++++++.+
T Consensus 363 ~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~---g~~i~~~PPliit~~eid~l~~~l~~ 439 (449)
T COG0161 363 DHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL---GDVIYLMPPLIITREEIDELVDALRE 439 (449)
T ss_pred cCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec---CCEEEEcCCccCCHHHHHHHHHHHHH
Confidence 57899999999999999999888765 345778899999999999997 68999999999999999999999999
Q ss_pred hHhc
Q 042283 78 SMTK 81 (82)
Q Consensus 78 ~l~~ 81 (82)
++++
T Consensus 440 al~~ 443 (449)
T COG0161 440 ALDE 443 (449)
T ss_pred HHHH
Confidence 9863
No 4
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.81 E-value=1.5e-19 Score=125.67 Aligned_cols=73 Identities=29% Similarity=0.610 Sum_probs=66.1
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+||.|++|||+|||+|+||..+. .+..+++.++++||++..++ +|+|||.|||+||++|+|+++++++++++.
T Consensus 326 ~~~~v~~vRG~GLmiGiel~~~~-----~a~~~~~~~~~~gvL~~~a~--~~ViR~~PpL~i~~eei~~~~~~l~~~l~~ 398 (404)
T COG4992 326 RYPLVKEVRGRGLMIGIELKEPY-----RARDIVRALREEGVLVLPAG--PNVIRFLPPLVITEEEIDEALDALERALAA 398 (404)
T ss_pred cCCceeeeecceeEEEEEecCcc-----cHHHHHHHHHHCCeEEecCC--CCeEEecCCccCCHHHHHHHHHHHHHHHHH
Confidence 57789999999999999998653 47789999999999999875 789999999999999999999999999863
No 5
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.78 E-value=1.7e-18 Score=123.21 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=65.9
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+||.|++|||+|||+||||+.+..++ ...+..+.+.|+++||+++++ +|+|+|+|||+||++|+|++++++
T Consensus 385 ~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---g~vi~~~PpL~it~~ei~~~~~~l 461 (472)
T PRK08742 385 EHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL---GDVLYWMPPYCVDEAQLALLADTT 461 (472)
T ss_pred cCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999998654321 123567889999999999886 589999999999999999999999
Q ss_pred HHhHhc
Q 042283 76 DCSMTK 81 (82)
Q Consensus 76 ~~~l~~ 81 (82)
+++|++
T Consensus 462 ~~~l~~ 467 (472)
T PRK08742 462 RHAIDE 467 (472)
T ss_pred HHHHHH
Confidence 999864
No 6
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.77 E-value=2.6e-18 Score=121.94 Aligned_cols=80 Identities=29% Similarity=0.494 Sum_probs=68.2
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc---------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR---------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV 72 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~---------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~ 72 (82)
+||.|++|||.|||+|+||+++..++ ...+..+...|+++|+++.+++..+++|+|.|||++|++|+|+++
T Consensus 372 ~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~ 451 (464)
T PRK06938 372 DYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVA 451 (464)
T ss_pred hCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHH
Confidence 58899999999999999997653221 235677889999999999887656799999999999999999999
Q ss_pred HHHHHhHhc
Q 042283 73 DVMDCSMTK 81 (82)
Q Consensus 73 ~~l~~~l~~ 81 (82)
++++++|.+
T Consensus 452 ~~l~~~l~~ 460 (464)
T PRK06938 452 EIFAEAVAA 460 (464)
T ss_pred HHHHHHHHH
Confidence 999999863
No 7
>PRK07483 hypothetical protein; Provisional
Probab=99.77 E-value=3.8e-18 Score=120.47 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=67.0
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANY 70 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~ 70 (82)
+||.|.+|||+|||+|+||+++..+. .+.+..+.+.|+++|+++.+++. .+++|+|+|||+||++|+|+
T Consensus 347 ~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~ 426 (443)
T PRK07483 347 QHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDE 426 (443)
T ss_pred cCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHH
Confidence 58889999999999999998653221 13467789999999999987642 26899999999999999999
Q ss_pred HHHHHHHhHhc
Q 042283 71 LVDVMDCSMTK 81 (82)
Q Consensus 71 ~~~~l~~~l~~ 81 (82)
++++++++|.+
T Consensus 427 ~~~~l~~~l~~ 437 (443)
T PRK07483 427 IVERLGDAIDA 437 (443)
T ss_pred HHHHHHHHHHH
Confidence 99999999863
No 8
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.76 E-value=5e-18 Score=119.71 Aligned_cols=80 Identities=24% Similarity=0.419 Sum_probs=68.3
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc---------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR---------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV 72 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~---------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~ 72 (82)
+||.|++|||+|||+||||+++..+. ...+..+...|+++|+++.+.+..+++|+|+|||+||++|+|+++
T Consensus 347 ~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~ 426 (442)
T TIGR00709 347 EHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGI 426 (442)
T ss_pred hCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHH
Confidence 68899999999999999997653211 235677889999999999887666899999999999999999999
Q ss_pred HHHHHhHhc
Q 042283 73 DVMDCSMTK 81 (82)
Q Consensus 73 ~~l~~~l~~ 81 (82)
++++++|++
T Consensus 427 ~~l~~~l~~ 435 (442)
T TIGR00709 427 SRFKQAVEE 435 (442)
T ss_pred HHHHHHHHH
Confidence 999999863
No 9
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.75 E-value=1.1e-17 Score=117.67 Aligned_cols=80 Identities=26% Similarity=0.348 Sum_probs=68.0
Q ss_pred CCCceeeecccceEEEEEeeeCCCC--chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQL--RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~--~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
++|.+.+|||.|+|+++||.++... ....+..+.+.|+++|+++..++..+|+|||.|||+||++|+|+++++++++|
T Consensus 340 ~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l 419 (425)
T PRK07495 340 TVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASI 419 (425)
T ss_pred hCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence 4788999999999999999754321 12456788999999999998876667999999999999999999999999998
Q ss_pred hc
Q 042283 80 TK 81 (82)
Q Consensus 80 ~~ 81 (82)
++
T Consensus 420 ~~ 421 (425)
T PRK07495 420 LE 421 (425)
T ss_pred HH
Confidence 63
No 10
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.75 E-value=5.9e-18 Score=117.19 Aligned_cols=70 Identities=20% Similarity=0.420 Sum_probs=61.9
Q ss_pred CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+|.|++|||+|||+|+||.++ +..+.+.|+++|+++.+++ .|++||.|||+||++|+|++++++++++++
T Consensus 291 ~~~v~~vRG~Gl~~gve~~~~-------~~~i~~~~~~~Gll~~~~g--~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~ 360 (364)
T PRK04013 291 GERVVTTRGRGLMIGIVLKKP-------VGKYVEELQNRGYLVHTAG--QRVIRLLPPLIISKDTMEEAKSAIEGVIND 360 (364)
T ss_pred cCcceeeeeCcEEEEEEeCCc-------HHHHHHHHHhCCcEEeeCC--CCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence 367999999999999999632 4578899999999998864 599999999999999999999999999863
No 11
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.75 E-value=1e-17 Score=118.74 Aligned_cols=80 Identities=30% Similarity=0.591 Sum_probs=68.3
Q ss_pred CCCceeeecccceEEEEEeeeCCCC---------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQL---------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV 72 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~---------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~ 72 (82)
+||.|++|||.|+|+|+||+++..+ ....+..+...|+++|+++.+.+..+|+++|+|||++|++|+|+++
T Consensus 366 ~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~ 445 (459)
T PRK06931 366 RYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFI 445 (459)
T ss_pred hCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHH
Confidence 5889999999999999999764321 1245677889999999999887656899999999999999999999
Q ss_pred HHHHHhHhc
Q 042283 73 DVMDCSMTK 81 (82)
Q Consensus 73 ~~l~~~l~~ 81 (82)
++++++|.+
T Consensus 446 ~~l~~~l~~ 454 (459)
T PRK06931 446 DRFEQALLA 454 (459)
T ss_pred HHHHHHHHH
Confidence 999999863
No 12
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.75 E-value=8.7e-18 Score=118.05 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=64.4
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
++|.|++|||+|+|++|||.++. .+..+.+.|+++|+++.+. +++++|+|||++|++|+|+++++++++|++
T Consensus 349 ~~~~v~~vRg~Gl~~~ie~~~~~-----~~~~~~~~~~~~Gl~~~~~---g~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 349 HLPGVADVRVLGAIGVVEMEQPV-----DMEEATQAAVDHGVWLRPF---GRLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred cCCCeeeeeccccEEEEEECCcc-----cHHHHHHHHHHCCeEEEec---CCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 47889999999999999997532 2457888999999999875 489999999999999999999999999987
Q ss_pred C
Q 042283 82 K 82 (82)
Q Consensus 82 ~ 82 (82)
|
T Consensus 421 ~ 421 (422)
T PRK05630 421 K 421 (422)
T ss_pred c
Confidence 6
No 13
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.74 E-value=1.3e-17 Score=118.23 Aligned_cols=78 Identities=33% Similarity=0.591 Sum_probs=66.6
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+||.|++|||+|+|+|+||+.+..+. .+.+..+...|+++||++.+++ +++++|+|||+||++|||+++++++++
T Consensus 371 ~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~--~~~i~~~Ppl~it~~eid~~~~~l~~~ 448 (459)
T PRK06082 371 KYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQ--GNVIQLSPPLIITREELTQALAILEEA 448 (459)
T ss_pred hCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecC--CCEEEEeCCCccCHHHHHHHHHHHHHH
Confidence 58889999999999999998643322 2456778899999999998763 799999999999999999999999999
Q ss_pred Hhc
Q 042283 79 MTK 81 (82)
Q Consensus 79 l~~ 81 (82)
+.+
T Consensus 449 l~~ 451 (459)
T PRK06082 449 IAK 451 (459)
T ss_pred HHH
Confidence 853
No 14
>PRK05965 hypothetical protein; Provisional
Probab=99.74 E-value=2e-17 Score=117.29 Aligned_cols=78 Identities=22% Similarity=0.412 Sum_probs=66.4
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+||.|++|||+|+|+||||..+..++ ...+..+...|+++|+++++++ .++|+|+|||++|++|+|++++++
T Consensus 364 ~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g--~~~i~~~PpL~it~~ei~~~~~~l 441 (459)
T PRK05965 364 AHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFG--DGVLGFAPALCCTEGEFDLIFERT 441 (459)
T ss_pred cCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecC--CcEEEEECCCcCCHHHHHHHHHHH
Confidence 47889999999999999998643221 1356788999999999998864 589999999999999999999999
Q ss_pred HHhHhc
Q 042283 76 DCSMTK 81 (82)
Q Consensus 76 ~~~l~~ 81 (82)
+++|++
T Consensus 442 ~~~l~~ 447 (459)
T PRK05965 442 RKTLDD 447 (459)
T ss_pred HHHHHH
Confidence 999863
No 15
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.74 E-value=2.4e-17 Score=116.82 Aligned_cols=79 Identities=34% Similarity=0.595 Sum_probs=67.9
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc-hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR-KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~-~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+||.+.+|||+|||+++||..+...+ .+.+..+.+.|+++|+++.+++..+++|||.|||++|++|+|+++++++++++
T Consensus 363 ~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~ 442 (457)
T PRK05639 363 SFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIK 442 (457)
T ss_pred hCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 57889999999999999997643322 34567889999999999988765579999999999999999999999999985
No 16
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.73 E-value=2.2e-17 Score=116.95 Aligned_cols=77 Identities=10% Similarity=0.251 Sum_probs=65.7
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+||.|++|||+|+|+++||+.+.......+..+...|+++||++.++ +++++|+|||++|++|||+++++++++|++
T Consensus 370 ~~~~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~---g~~l~~~Ppl~it~~eid~~~~~l~~al~~ 446 (453)
T PRK06943 370 AHPQVRHLRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPI---GTTVYLMPPYVLDDDEIAWLAERTRATLDA 446 (453)
T ss_pred cCCCEEeEeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec---CCEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 47889999999999999998543222345678899999999999876 478999999999999999999999999863
No 17
>PRK06149 hypothetical protein; Provisional
Probab=99.73 E-value=2.4e-17 Score=124.98 Aligned_cols=80 Identities=36% Similarity=0.682 Sum_probs=69.8
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+||.|++|||+|||+|+||+.+..+. .+.+..+.+.|+++|+++.++|..+|+|+|.|||+||++|+|+++++++++
T Consensus 888 ~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~ 967 (972)
T PRK06149 888 RHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRV 967 (972)
T ss_pred hCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 58899999999999999998543321 345678999999999999998767799999999999999999999999999
Q ss_pred Hhc
Q 042283 79 MTK 81 (82)
Q Consensus 79 l~~ 81 (82)
|.+
T Consensus 968 l~~ 970 (972)
T PRK06149 968 LTE 970 (972)
T ss_pred HHh
Confidence 964
No 18
>PRK06105 aminotransferase; Provisional
Probab=99.73 E-value=3.2e-17 Score=116.21 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=65.5
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+||.|++|||+|+|+||||+.+..++ ...+..+...|+++||++.++ +++++|+|||+||++|+|++++++
T Consensus 367 ~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~---g~~i~l~Ppl~it~~eid~~~~~l 443 (460)
T PRK06105 367 DHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM---GDTLAFCPPLIITAAQVDEMVDRF 443 (460)
T ss_pred cCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec---CCEEEEECCCccCHHHHHHHHHHH
Confidence 58899999999999999998543321 234567889999999999875 589999999999999999999999
Q ss_pred HHhHhc
Q 042283 76 DCSMTK 81 (82)
Q Consensus 76 ~~~l~~ 81 (82)
+++|++
T Consensus 444 ~~~l~~ 449 (460)
T PRK06105 444 GRALDD 449 (460)
T ss_pred HHHHHH
Confidence 999863
No 19
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.72 E-value=6.6e-17 Score=114.01 Aligned_cols=80 Identities=30% Similarity=0.488 Sum_probs=68.7
Q ss_pred CCCceeeecccceEEEEEeeeCCCC--chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQL--RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~--~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
+|+.|++|||.|+|++++|+++... ..+.+..+.+.|+++||++.+++..+++|||+|||++|++|+|+++++++++|
T Consensus 361 ~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l 440 (443)
T PRK06058 361 EDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAAL 440 (443)
T ss_pred hCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 4788999999999999999865311 13467788999999999998876567999999999999999999999999998
Q ss_pred hc
Q 042283 80 TK 81 (82)
Q Consensus 80 ~~ 81 (82)
++
T Consensus 441 ~~ 442 (443)
T PRK06058 441 AD 442 (443)
T ss_pred Hh
Confidence 64
No 20
>PRK06917 hypothetical protein; Provisional
Probab=99.72 E-value=6.9e-17 Score=114.21 Aligned_cols=80 Identities=29% Similarity=0.500 Sum_probs=67.2
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANY 70 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~ 70 (82)
+||.+.+|||.|+|+++||+++..+. .+.+..+...|+++||++.+++ ..+|+++|+|||++|++|||+
T Consensus 347 ~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~ 426 (447)
T PRK06917 347 QSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDE 426 (447)
T ss_pred cCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHH
Confidence 57889999999999999998653321 2456788999999999998763 237899999999999999999
Q ss_pred HHHHHHHhHhc
Q 042283 71 LVDVMDCSMTK 81 (82)
Q Consensus 71 ~~~~l~~~l~~ 81 (82)
++++++++|++
T Consensus 427 ~~~~l~~~l~~ 437 (447)
T PRK06917 427 LLSIFAKSVEE 437 (447)
T ss_pred HHHHHHHHHHH
Confidence 99999999853
No 21
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.71 E-value=8.6e-17 Score=114.27 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=65.3
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+||.|++|||+|+|++|||++++.++ ...+..+...|+++|+++.++ +++++|+|||++|++|||++++++
T Consensus 364 ~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~i~~~Ppl~it~~eid~~~~~l 440 (466)
T PRK07030 364 DHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL---GSVVYFLPPYVITPEQIDFLAEVA 440 (466)
T ss_pred cCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec---CCEEEEECCccCCHHHHHHHHHHH
Confidence 57889999999999999998644321 123467889999999999875 489999999999999999999999
Q ss_pred HHhHhc
Q 042283 76 DCSMTK 81 (82)
Q Consensus 76 ~~~l~~ 81 (82)
+++|++
T Consensus 441 ~~al~~ 446 (466)
T PRK07030 441 SEGIDI 446 (466)
T ss_pred HHHHHH
Confidence 999864
No 22
>PRK06148 hypothetical protein; Provisional
Probab=99.70 E-value=6.9e-17 Score=122.91 Aligned_cols=80 Identities=39% Similarity=0.711 Sum_probs=69.8
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+||.|++|||.|||+|+||..+..+. .+.+..+.+.|+++||++.++|..++++||.|||++|++|+|+++++++++
T Consensus 928 ~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~ 1007 (1013)
T PRK06148 928 RFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDV 1007 (1013)
T ss_pred hCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 58899999999999999998654322 345678999999999999988777899999999999999999999999999
Q ss_pred Hhc
Q 042283 79 MTK 81 (82)
Q Consensus 79 l~~ 81 (82)
|.+
T Consensus 1008 l~~ 1010 (1013)
T PRK06148 1008 LAA 1010 (1013)
T ss_pred HHH
Confidence 863
No 23
>PRK07480 putative aminotransferase; Validated
Probab=99.70 E-value=9.4e-17 Score=113.79 Aligned_cols=77 Identities=23% Similarity=0.366 Sum_probs=64.5
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+||.|++|||.|+|+|+||+++..++ ......+...|+++|+++.++ +++++|+|||+||++|||++++++
T Consensus 366 ~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---~~~l~~~Ppl~it~~eid~~~~~l 442 (456)
T PRK07480 366 DHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV---GDRMIISPPLVITHAEIDELVEKA 442 (456)
T ss_pred cCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999998653321 123457788999999999875 589999999999999999999999
Q ss_pred HHhHhc
Q 042283 76 DCSMTK 81 (82)
Q Consensus 76 ~~~l~~ 81 (82)
+++|.+
T Consensus 443 ~~al~~ 448 (456)
T PRK07480 443 RKALDA 448 (456)
T ss_pred HHHHHH
Confidence 999863
No 24
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.70 E-value=7.7e-17 Score=113.53 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=63.6
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+||.|++|||+|+|+++|+..+. .+..+...|+++|++++++ +++|+|+|||+||++|+++++++++++|++
T Consensus 352 ~~~~i~~vRg~Gl~~~ve~~~~~-----~~~~~~~~l~~~Gl~~~~~---g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 352 DAPMVADVRVLGAIGVVETTRPV-----NMAALQRFFVEQGVWIRPF---GKLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred cCCCEEeEeccceEEEEEeCCcc-----cHHHHHHHHHHCCcEEEec---CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 47889999999999999997542 2557889999999999876 589999999999999999999999999864
No 25
>PRK07481 hypothetical protein; Provisional
Probab=99.70 E-value=1.4e-16 Score=112.60 Aligned_cols=77 Identities=32% Similarity=0.642 Sum_probs=65.3
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+||.|++|||+|+|+|+||..+..+. ...+..+...|+++|+++.++ +++++|+|||+||++|||++++++
T Consensus 363 ~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---g~~i~l~Ppl~it~~eid~~~~~l 439 (449)
T PRK07481 363 RFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS---GTKIILSPPLVIQREDVDRIVDAL 439 (449)
T ss_pred cCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999997543211 235677889999999999886 468999999999999999999999
Q ss_pred HHhHhc
Q 042283 76 DCSMTK 81 (82)
Q Consensus 76 ~~~l~~ 81 (82)
++++++
T Consensus 440 ~~~l~~ 445 (449)
T PRK07481 440 DAGLSA 445 (449)
T ss_pred HHHHHh
Confidence 999864
No 26
>PRK12403 putative aminotransferase; Provisional
Probab=99.70 E-value=1.3e-16 Score=113.09 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=63.7
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+||.|++|||.|+|+|+||+.+..+. ......+...|+++|+++.++ +++++|+|||+||++|+|++++++
T Consensus 370 ~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---~~~~~l~Ppl~it~~eid~~~~~l 446 (460)
T PRK12403 370 DHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST---LGRMIMAPALVAGRAEIDELVDKT 446 (460)
T ss_pred cCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998643321 123455778889999999865 468999999999999999999999
Q ss_pred HHhHhc
Q 042283 76 DCSMTK 81 (82)
Q Consensus 76 ~~~l~~ 81 (82)
+++|.+
T Consensus 447 ~~al~~ 452 (460)
T PRK12403 447 RIAVDR 452 (460)
T ss_pred HHHHHH
Confidence 999863
No 27
>PRK07036 hypothetical protein; Provisional
Probab=99.70 E-value=1.6e-16 Score=112.87 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=65.2
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+||.|++|||.|+|+++||+++..++ ...+..+...|+++|+++.+. +++++|+|||+||++|||++++++
T Consensus 370 ~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---~~~~~l~Ppl~it~~~id~~~~~l 446 (466)
T PRK07036 370 ELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL---EHLCVLSPPLIITRAQIDEIVAIL 446 (466)
T ss_pred cCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec---CCEEEEeCCCcCCHHHHHHHHHHH
Confidence 58899999999999999998654321 235677889999999999875 479999999999999999999999
Q ss_pred HHhHh
Q 042283 76 DCSMT 80 (82)
Q Consensus 76 ~~~l~ 80 (82)
+++|+
T Consensus 447 ~~al~ 451 (466)
T PRK07036 447 RAAIE 451 (466)
T ss_pred HHHHH
Confidence 99985
No 28
>PRK07482 hypothetical protein; Provisional
Probab=99.69 E-value=1.4e-16 Score=112.94 Aligned_cols=79 Identities=27% Similarity=0.431 Sum_probs=65.7
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+||.|++|||.|+|+|+||+++..++ ...+..+...|+++|+++++.. .+++++|+|||++|++|||++++++
T Consensus 370 ~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~-~~~~i~~~Ppl~it~~ei~~~~~~l 448 (461)
T PRK07482 370 DHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP-HGDILGFAPPLVLTRAEADEIVAIA 448 (461)
T ss_pred cCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC-CCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 68899999999999999998643221 1245788999999999987532 3699999999999999999999999
Q ss_pred HHhHhc
Q 042283 76 DCSMTK 81 (82)
Q Consensus 76 ~~~l~~ 81 (82)
+++|++
T Consensus 449 ~~~l~~ 454 (461)
T PRK07482 449 KDAVDE 454 (461)
T ss_pred HHHHHH
Confidence 999863
No 29
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.69 E-value=1.9e-16 Score=112.33 Aligned_cols=77 Identities=22% Similarity=0.486 Sum_probs=65.3
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+||.|++|||+|+|+|+||+++..++ ...+..+...|+++|+++.+. +++++|+|||++|++|||++++++
T Consensus 373 ~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~l~~~Ppl~it~~~id~~~~~l 449 (460)
T PRK06916 373 ALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL---GNTIVFMPPLASTIDELDEMLRIL 449 (460)
T ss_pred cCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec---CCEEEEeCCcccCHHHHHHHHHHH
Confidence 47889999999999999998654321 123567889999999999875 589999999999999999999999
Q ss_pred HHhHhc
Q 042283 76 DCSMTK 81 (82)
Q Consensus 76 ~~~l~~ 81 (82)
+++|++
T Consensus 450 ~~~l~~ 455 (460)
T PRK06916 450 YKAISD 455 (460)
T ss_pred HHHHHh
Confidence 999863
No 30
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.68 E-value=1.8e-16 Score=112.17 Aligned_cols=73 Identities=23% Similarity=0.394 Sum_probs=64.5
Q ss_pred CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
+|| .|++|||.|+|++|||.++ ..+..+++.|+++|+++.+++..++++||.|||++|++|+|+++++++++|
T Consensus 369 ~~~~~i~~vRG~Gl~~giel~~~-----~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 369 EYPDLIIEARGKGLLMAIEFRDN-----EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred hCCCceEEEecceEEEEEEeCCh-----HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 477 7899999999999999764 256789999999999998765557999999999999999999999999875
No 31
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.68 E-value=2.1e-16 Score=111.37 Aligned_cols=72 Identities=14% Similarity=0.280 Sum_probs=63.0
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
++|.|++|||.|+|++|++.++. .+..+.+.|+++|+++.+. +++|+|+|||+||++|+|+++++|+++|.+
T Consensus 354 ~~~~v~~vRg~Gl~~~iel~~~~-----~~~~i~~~l~e~Gi~v~~~---g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 354 EFDSVAEVRVLGAIGVVEMKEPV-----NMATLQPRFVEHGIWVRPF---GKLVYIMPPFIISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred cCCCeeeeeccceEEEEEeCCcc-----cHHHHHHHHHHCCeEEEec---CCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999996432 3467889999999999876 489999999999999999999999999863
No 32
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.68 E-value=3.3e-16 Score=112.28 Aligned_cols=76 Identities=26% Similarity=0.449 Sum_probs=65.1
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
++|.|.+|||.|+|+|++|.++.... ...+..+.+.|+++|+++.+. +++++|+|||++|++|||++++++
T Consensus 409 ~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---g~~lrl~Ppl~it~eeid~~~~~l 485 (504)
T PLN02760 409 GSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA---GDNIMMSPPLIITPEEVDELISIY 485 (504)
T ss_pred cCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec---CCEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999998654321 134677889999999999875 578999999999999999999999
Q ss_pred HHhHh
Q 042283 76 DCSMT 80 (82)
Q Consensus 76 ~~~l~ 80 (82)
+++|+
T Consensus 486 ~~al~ 490 (504)
T PLN02760 486 GKALK 490 (504)
T ss_pred HHHHH
Confidence 99985
No 33
>PRK07678 aminotransferase; Validated
Probab=99.68 E-value=4.7e-16 Score=110.05 Aligned_cols=80 Identities=30% Similarity=0.675 Sum_probs=66.9
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc----hHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~----~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
+||.|.+|||+|+|++++|+.+..+. .+.+..+...|+++|+++.+.+. .+++|+|+|||++|++|||++++
T Consensus 362 ~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~ 441 (451)
T PRK07678 362 EHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVG 441 (451)
T ss_pred cCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHH
Confidence 57889999999999999998643221 24567889999999999987542 24899999999999999999999
Q ss_pred HHHHhHhc
Q 042283 74 VMDCSMTK 81 (82)
Q Consensus 74 ~l~~~l~~ 81 (82)
++++++++
T Consensus 442 ~l~~~l~~ 449 (451)
T PRK07678 442 TLKTALER 449 (451)
T ss_pred HHHHHHHh
Confidence 99999864
No 34
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.67 E-value=5.6e-16 Score=109.56 Aligned_cols=77 Identities=22% Similarity=0.378 Sum_probs=64.6
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
++|.|.++||.|+|++++|..........+..+.+.|+++|++++.. ++++||+|||++|++|||+++++++++|.+
T Consensus 367 ~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 367 GLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT---GDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred cCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec---CCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 46889999999999999998532211234567889999999999874 589999999999999999999999999864
No 35
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=99.66 E-value=3.8e-16 Score=106.35 Aligned_cols=80 Identities=35% Similarity=0.647 Sum_probs=70.2
Q ss_pred CCCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHH-cCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283 1 DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQ-MGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 1 ~~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~-~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
++|+.|+||||.||||||+++++..++ .+.+..++.++.+ +|+++...|++.|+++|-||+++++++.++++..|+
T Consensus 353 ~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld 432 (452)
T KOG1403|consen 353 QKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLD 432 (452)
T ss_pred hhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHH
Confidence 368999999999999999999887654 3456667788876 679999999999999999999999999999999999
Q ss_pred HhHh
Q 042283 77 CSMT 80 (82)
Q Consensus 77 ~~l~ 80 (82)
++|.
T Consensus 433 ~iLT 436 (452)
T KOG1403|consen 433 EILT 436 (452)
T ss_pred HHHH
Confidence 8874
No 36
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.66 E-value=4.6e-16 Score=110.46 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=65.7
Q ss_pred CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+|| .|++|||.|+|++|+|.++ +.+..+.+.|+++|+++.+.+.+++++||.|||++|++|+|+++++++++++
T Consensus 376 ~~~~~i~~VrG~Gl~~giel~~~-----~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~ 450 (459)
T PRK11522 376 EYPDLVQEARGKGMLMAIEFVDN-----EIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALA 450 (459)
T ss_pred hCCCceeeEEeceeEEEEEecCc-----hHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 577 7899999999999999754 2567889999999999987755679999999999999999999999999985
No 37
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.66 E-value=8.9e-16 Score=108.48 Aligned_cols=77 Identities=32% Similarity=0.635 Sum_probs=65.5
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+||.|++|||.|+|++++|..+.... ...+..+...|+++|+++.+. .++++||+|||++|++|+|+++++++++
T Consensus 349 ~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~--~~~~lr~~p~l~~t~~~id~~~~~l~~~ 426 (445)
T PRK08593 349 KYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV--AGNVLRFQPPLVITYEQLDTALNTIEQA 426 (445)
T ss_pred cCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc--CCCEEEEECCCccCHHHHHHHHHHHHHH
Confidence 58899999999999999998543211 345678899999999999765 3689999999999999999999999998
Q ss_pred Hh
Q 042283 79 MT 80 (82)
Q Consensus 79 l~ 80 (82)
++
T Consensus 427 l~ 428 (445)
T PRK08593 427 FT 428 (445)
T ss_pred HH
Confidence 75
No 38
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.65 E-value=1.4e-15 Score=106.72 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=67.0
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc--hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~--~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
+||.+.++||+|+|+++||.++.... ...+..+.+.|+++|+++.+++..+|+|||.|||++|++|++++++++++++
T Consensus 340 ~~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l 419 (421)
T PRK09792 340 SVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDAL 419 (421)
T ss_pred hCCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 57889999999999999997532111 2356788999999999998766567999999999999999999999999998
Q ss_pred h
Q 042283 80 T 80 (82)
Q Consensus 80 ~ 80 (82)
.
T Consensus 420 ~ 420 (421)
T PRK09792 420 S 420 (421)
T ss_pred h
Confidence 5
No 39
>PRK06062 hypothetical protein; Provisional
Probab=99.65 E-value=1.1e-15 Score=108.17 Aligned_cols=77 Identities=25% Similarity=0.452 Sum_probs=64.7
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc---------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR---------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV 72 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~---------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~ 72 (82)
+||.|.++||.|+|+||||..+..++ ...+..+.+.|+++|+++.+. ++++||+|||++|++|||+++
T Consensus 360 ~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~---~~~lrl~ppl~~t~~eid~~~ 436 (451)
T PRK06062 360 RHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN---GNRIHVVPPCTVTEDEVREGL 436 (451)
T ss_pred cCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec---CCEEEEECCccCCHHHHHHHH
Confidence 47889999999999999997543211 124668889999999998764 689999999999999999999
Q ss_pred HHHHHhHhc
Q 042283 73 DVMDCSMTK 81 (82)
Q Consensus 73 ~~l~~~l~~ 81 (82)
++++++|++
T Consensus 437 ~~l~~~l~~ 445 (451)
T PRK06062 437 AILDAALAV 445 (451)
T ss_pred HHHHHHHHH
Confidence 999999863
No 40
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.65 E-value=1.4e-15 Score=107.51 Aligned_cols=77 Identities=19% Similarity=0.359 Sum_probs=64.8
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
++|.|.+|||.|+|++++|+.........+..+...|+++||++.++ ++++||+|||++|++|||++++++++++++
T Consensus 364 ~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~---~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 364 DAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT---GDILALSPPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred cCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec---CCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 36788999999999999998543222234567888999999999875 589999999999999999999999999864
No 41
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.65 E-value=2e-15 Score=105.94 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=67.0
Q ss_pred CCCceeeecccceEEEEEeeeCCCC--chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQL--RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~--~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
++|.+.++||.|+|+++++..+... ..+.+..+.+.++++||++.+++..++++||+|||++|+++++++++++++++
T Consensus 340 ~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 340 SCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLL 419 (421)
T ss_pred hCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999753211 13467778888999999999887667999999999999999999999999988
Q ss_pred h
Q 042283 80 T 80 (82)
Q Consensus 80 ~ 80 (82)
.
T Consensus 420 ~ 420 (421)
T PRK06777 420 A 420 (421)
T ss_pred h
Confidence 5
No 42
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.64 E-value=1e-15 Score=107.22 Aligned_cols=74 Identities=22% Similarity=0.448 Sum_probs=64.3
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+|+.++++||.|+|++++|.++. ...+..+.+.|+++|+++.+.+ .+++||.|||++|++|+|+++++++++|.
T Consensus 329 ~~~~i~~vrg~Gl~~~i~~~~~~---~~~a~~i~~~l~~~Gvlv~~~g--~~~lRl~Ppl~it~eeid~~l~~l~~~l~ 402 (408)
T PRK04612 329 EFGVFAQVRGRGLMLGAVLAPAH---AGQAGAILDLAAEHGLLLLQAG--PDVLRFVPALNLTDAELADGLARLRLALA 402 (408)
T ss_pred hCCCeeeeeccceEEEEEecCch---hhHHHHHHHHHHHCCeEEeeCC--CCEEEEcCCccCCHHHHHHHHHHHHHHHH
Confidence 47889999999999999997432 1346778899999999998864 59999999999999999999999999985
No 43
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.64 E-value=1.6e-15 Score=107.15 Aligned_cols=77 Identities=34% Similarity=0.562 Sum_probs=65.2
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+||.+++|||+|+|+|+||+++..++ ...+..+...|+++|+++.+. .++++||+|||++|++|+|+++++++++
T Consensus 346 ~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~~~~lr~~P~l~~t~~~id~~~~~l~~~ 423 (443)
T PRK08360 346 KHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF--SGNVLRIQPPLTIEKEVLDEGLDILEEA 423 (443)
T ss_pred hCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec--CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999998653222 234567889999999998764 3699999999999999999999999999
Q ss_pred Hh
Q 042283 79 MT 80 (82)
Q Consensus 79 l~ 80 (82)
++
T Consensus 424 l~ 425 (443)
T PRK08360 424 IE 425 (443)
T ss_pred HH
Confidence 85
No 44
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.64 E-value=5.8e-16 Score=106.06 Aligned_cols=75 Identities=23% Similarity=0.456 Sum_probs=64.8
Q ss_pred CC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 3 YG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 3 ~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.| .|++|||+||+.+|+|...+. +...+..++-.+.++|++..+. ++|+|||+|||+|+++|+++.++++.+++.
T Consensus 351 ~p~~v~~VRGrGl~~ai~i~~~~~-~~~~aw~~cl~lk~~g~LAkpt--H~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 351 FPHVVKEVRGRGLLNAIVINPSKT-SGQDAWDVCLALKENGLLAKPT--HGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred ccchhheeeccceEEEEEeccccc-cchhHHHHHHcccccccccCCC--CCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 45 578999999999999975432 2346778888999999999885 799999999999999999999999999875
No 45
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.63 E-value=3e-15 Score=105.74 Aligned_cols=78 Identities=33% Similarity=0.572 Sum_probs=66.0
Q ss_pred CCCceeeecccceEEEEEeeeCCCC-chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQL-RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~-~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+||.++++||.|+|++++|.++... ..+.+..+.+.|+++|+++.+.+ .+++||+||+++|++|||++++++++++.
T Consensus 361 ~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~--~~~lr~~p~l~~t~~~id~~~~~l~~~l~ 438 (441)
T PRK05769 361 KYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG--KSAIRIIPPLIITEEEADIGLEILEEAIK 438 (441)
T ss_pred hCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4788999999999999999765311 13456778899999999998764 58999999999999999999999999986
Q ss_pred c
Q 042283 81 K 81 (82)
Q Consensus 81 ~ 81 (82)
+
T Consensus 439 ~ 439 (441)
T PRK05769 439 E 439 (441)
T ss_pred H
Confidence 4
No 46
>PRK06541 hypothetical protein; Provisional
Probab=99.63 E-value=3.1e-15 Score=106.21 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=64.2
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc----hH-----HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR----KA-----ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV 72 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~----~~-----~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~ 72 (82)
+||.|.++||.|+|+++||+++..++ .. ....+...|+++|+++.+.+...++|||+|||++|++|||+++
T Consensus 367 ~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~ 446 (460)
T PRK06541 367 DLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIE 446 (460)
T ss_pred cCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHH
Confidence 36888999999999999998643221 11 1235778999999999875333589999999999999999999
Q ss_pred HHHHHhHhc
Q 042283 73 DVMDCSMTK 81 (82)
Q Consensus 73 ~~l~~~l~~ 81 (82)
+++++++.+
T Consensus 447 ~~l~~~l~~ 455 (460)
T PRK06541 447 QILRSVLTE 455 (460)
T ss_pred HHHHHHHHH
Confidence 999999863
No 47
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.61 E-value=1.8e-15 Score=107.64 Aligned_cols=71 Identities=27% Similarity=0.458 Sum_probs=62.2
Q ss_pred CCC-ceeeec--ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 2 KYG-TIGDAR--GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 2 ~~~-~v~~vR--g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+|| .|++|| |.|+|+++++.+ ...+..+.+.|+++|+++...+ .++|||.|||++|++|+|+++++|+++
T Consensus 391 ~~~~~i~~vRg~G~Glm~gie~~~-----~~~~~~i~~~~~~~Gvl~~~~g--~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 391 KYPEFIQNLRGKGRGTFIAWDTPD-----EAKRDKLLKKARNNGVNIGGCG--VKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred hCCCceeeecccCeEEEEEEecCC-----HHHHHHHHHHHHHCCcEEecCC--CCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 478 799999 999999999942 1356789999999999998764 589999999999999999999999987
Q ss_pred H
Q 042283 79 M 79 (82)
Q Consensus 79 l 79 (82)
+
T Consensus 464 ~ 464 (464)
T TIGR00699 464 I 464 (464)
T ss_pred C
Confidence 5
No 48
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.61 E-value=5.3e-15 Score=110.76 Aligned_cols=76 Identities=13% Similarity=0.157 Sum_probs=65.7
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHH-HcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMK-QMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~-~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
+||.|++|||+|+|+||||+++..+. ...+..+.+.|+ ++|+++++. +|+|+++||++++++|++++++++++
T Consensus 738 ~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~---Gnvi~l~pP~~i~~e~l~~~~~~l~~ 814 (817)
T PLN02974 738 SLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL---GNVVYLMCGPTTSPETCTRLLRKVYR 814 (817)
T ss_pred hCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec---CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 58899999999999999998754321 235678889999 999999986 58999999999999999999999998
Q ss_pred hHh
Q 042283 78 SMT 80 (82)
Q Consensus 78 ~l~ 80 (82)
.|.
T Consensus 815 ~~~ 817 (817)
T PLN02974 815 RLS 817 (817)
T ss_pred HhC
Confidence 873
No 49
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.59 E-value=8.1e-15 Score=102.67 Aligned_cols=75 Identities=23% Similarity=0.411 Sum_probs=65.7
Q ss_pred CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
++| .+.++||.|+|++++|.+. ..+..+...|+++|+++.+++..+++|||+|||++|++|+|+++++++++|+
T Consensus 337 ~~~~~~~~vrg~Gl~~~l~l~~~-----~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 337 EYPELIKQVRGRGLMQGIECGDG-----DLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred hCCCceEeeecceeEEEEEecCh-----HHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 356 5789999999999999643 2567889999999999988766679999999999999999999999999987
Q ss_pred c
Q 042283 81 K 81 (82)
Q Consensus 81 ~ 81 (82)
+
T Consensus 412 ~ 412 (412)
T TIGR02407 412 E 412 (412)
T ss_pred C
Confidence 5
No 50
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.56 E-value=3.3e-14 Score=99.89 Aligned_cols=79 Identities=37% Similarity=0.569 Sum_probs=66.8
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc-hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR-KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~-~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+|+.+.++||.|+|++++|.++...+ ...+..+.+.++++|+++.+++..++++||.||+++|++||++++++++++++
T Consensus 349 ~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~ 428 (433)
T PRK08117 349 KHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALT 428 (433)
T ss_pred cCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 47788899999999999998653211 34566788999999999987765679999999999999999999999999985
No 51
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.55 E-value=2e-14 Score=101.64 Aligned_cols=73 Identities=23% Similarity=0.451 Sum_probs=62.7
Q ss_pred CCCcee-eecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYGTIG-DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~~v~-~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+||.+. +|||.|+|++++|.+. .....+...|+++|+++.+++ .+++||+|||++|++|+|++++++++++.
T Consensus 368 ~~~~~~~~vrg~G~~~~i~~~~~-----~~~~~~~~~l~~~Gvl~~~~~--~~~lr~~P~l~~t~~eid~~l~~l~~~l~ 440 (443)
T PRK08297 368 EFPAVVSNVRGRGLMCAFDLPTT-----ADRDEVIRRLWEEGVLVLPCG--ERSIRFRPALTVTTEEIDAAIDALRRALP 440 (443)
T ss_pred HCCCcceeeeccceEEEEEecCH-----HHHHHHHHHHHHCCEEEecCC--CCeEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 467665 9999999999999532 356678899999999998864 58999999999999999999999999986
Q ss_pred c
Q 042283 81 K 81 (82)
Q Consensus 81 ~ 81 (82)
+
T Consensus 441 ~ 441 (443)
T PRK08297 441 E 441 (443)
T ss_pred h
Confidence 4
No 52
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.54 E-value=7.3e-14 Score=97.91 Aligned_cols=79 Identities=27% Similarity=0.430 Sum_probs=66.7
Q ss_pred CCCceeeecccceEEEEEeeeCCCC--chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQL--RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~--~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
++|.+.++||.|+|++++|.++... ....+..+.+.|+++||++.+++..++++||+||+++|++++++++++++++|
T Consensus 339 ~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l 418 (420)
T TIGR00700 339 VDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAIL 418 (420)
T ss_pred hCCCEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence 4677899999999999999743211 13456788899999999999876567999999999999999999999999998
Q ss_pred h
Q 042283 80 T 80 (82)
Q Consensus 80 ~ 80 (82)
+
T Consensus 419 ~ 419 (420)
T TIGR00700 419 A 419 (420)
T ss_pred h
Confidence 5
No 53
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.54 E-value=7.7e-14 Score=98.63 Aligned_cols=79 Identities=34% Similarity=0.565 Sum_probs=66.8
Q ss_pred CCCceeeecccceEEEEEeeeCCCC---chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQL---RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~---~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+||.+.++||.|+|+++++..+..+ ....+..+.+.|+++|+++.+++..++++||.||+++|+++||+++++|+++
T Consensus 361 ~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~ 440 (451)
T PRK06918 361 KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEES 440 (451)
T ss_pred hCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHH
Confidence 4677899999999999999743321 1345778889999999999987655799999999999999999999999999
Q ss_pred Hh
Q 042283 79 MT 80 (82)
Q Consensus 79 l~ 80 (82)
+.
T Consensus 441 l~ 442 (451)
T PRK06918 441 LQ 442 (451)
T ss_pred HH
Confidence 85
No 54
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.52 E-value=9.2e-14 Score=97.85 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=62.5
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+++.+.++||.|+|++++|.++. .+..+...|+++||++.+. +++++|.|||++|++|||+++++++++|++
T Consensus 355 ~~~~i~~vrg~G~~~~i~~~~~~-----~~~~~~~~l~~~Gv~~~~~---~~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 355 KNPVVKDVRVLGAIGVVEMYKPV-----NVEELQKKFVEQGVWIRPF---GKLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred cCCCEEeEeccccEEEEEECCcc-----CHHHHHHHHHHCCeEEEec---CCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 35678899999999999996432 3467889999999999875 479999999999999999999999999976
No 55
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.51 E-value=1.3e-13 Score=96.63 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=64.0
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
++|.+.++||.|+|+++++.++.. ...+..+...++++|+++.+. ++++||+|||++|++|||++++++++++++
T Consensus 348 ~~~~i~~vrg~Gl~~~i~l~~~~~--~~~~~~l~~~l~~~Gv~v~~~---~~~lR~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 348 DLPGVADVRVLGAIGAVELDRPVL--ERDGPALRAFALERGVLLRPL---GNTIYLMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred cCCCeEEeecccEEEEEEeccCcc--hhHHHHHHHHHHHCCeEEEec---CCEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence 467788999999999999975421 124567889999999999875 489999999999999999999999999976
No 56
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.50 E-value=1.3e-13 Score=96.21 Aligned_cols=70 Identities=23% Similarity=0.458 Sum_probs=58.1
Q ss_pred CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHc---CceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQM---GVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~---Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
++ +.++||.|+|++|++.++ .+..+.+.++++ |+++..++ +++|||+||+++|++|+|+++++|++++
T Consensus 321 ~~-i~~vrG~Glm~~i~l~~~------~~~~~~~~~~~~~~~Gi~~~~~~--~~~lR~~p~l~~t~~ei~~~~~~l~~~l 391 (395)
T PRK03715 321 RG-LEGERGEGLLRALLLGKD------IGPQIVEKARDMQPDGLLLNAPR--PNLLRFMPALNVTTEEIDQMIAMLRSVL 391 (395)
T ss_pred CC-cCeEEcceeEEEEEecCc------hHHHHHHHHHhccCCCEEEeecC--CCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 44 788999999999999753 234566666666 99987653 6899999999999999999999999998
Q ss_pred hc
Q 042283 80 TK 81 (82)
Q Consensus 80 ~~ 81 (82)
++
T Consensus 392 ~~ 393 (395)
T PRK03715 392 DK 393 (395)
T ss_pred Hh
Confidence 64
No 57
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.48 E-value=1.5e-13 Score=96.85 Aligned_cols=70 Identities=24% Similarity=0.487 Sum_probs=60.3
Q ss_pred CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
++| .+.++||.|+|++++|... ..+..+.+.|+++|+++.+.+ .+++||+|||++|++|+|+++++++++
T Consensus 361 ~~~~~i~~vrg~G~~~~i~~~~~-----~~~~~~~~~l~~~Gvl~~~~g--~~~lr~~P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 361 EFPHLVSNPRGRGLMCAFDLPST-----ADRDEVIRQLYREGVLLLGCG--ERSIRFRPPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred hCccceecccccceeEEEEeCCH-----HHHHHHHHHHHhCCeEEecCC--CCeEEEECCccCCHHHHHHHHHHHHhC
Confidence 467 8899999999999999532 246678899999999998764 489999999999999999999999874
No 58
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.47 E-value=2.4e-13 Score=95.56 Aligned_cols=74 Identities=23% Similarity=0.432 Sum_probs=64.0
Q ss_pred CCCc-eeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYGT-IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~~-v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+||. +.++||.|+|+++++.+. ..+..+.+.|+++|+++.+++...++|||+|||++|++|+++++++++++++
T Consensus 341 ~~~~~~~~vrg~Gl~~~i~l~~~-----~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~ 415 (425)
T PRK09264 341 KYPGLGAEVRGRGMMQGIDFGDG-----ELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVA 415 (425)
T ss_pred hCCCceecceecccEEEEEecCh-----HHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 3664 489999999999999642 3567889999999999988765679999999999999999999999999875
No 59
>PLN00144 acetylornithine transaminase
Probab=99.47 E-value=3.1e-13 Score=93.91 Aligned_cols=72 Identities=21% Similarity=0.488 Sum_probs=62.6
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+||.+.++||.|+|++++|.. .+..+...|+++|+++.+++. +++|||.||+++|++|+++++++|++++.+
T Consensus 309 ~~~~~~~vrg~G~~~~l~l~~-------~~~~~~~~~~~~Gv~i~~~~~-~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 309 GNPHVKEVRGVGLLVGIQLDV-------PAGPLVDACRDSGLLVLTAGK-GDVVRLVPPLVISEAELEQAVEILADCLPA 380 (382)
T ss_pred hCCCceeeecCceEEEEEecC-------ccHHHHHHHHHCCeEEeecCC-CCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence 577889999999999999932 235688899999999988643 599999999999999999999999999864
No 60
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.42 E-value=2.3e-12 Score=90.42 Aligned_cols=80 Identities=25% Similarity=0.434 Sum_probs=67.3
Q ss_pred CCCceeeecccceEEEEEeeeCCCC---chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQL---RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~---~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
++|.+.++||.|+|++++|.++..+ ....+..+...|+++|+++.+++..++++||.||+++|++||++++++++++
T Consensus 341 ~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~ 420 (425)
T PRK08088 341 KHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQC 420 (425)
T ss_pred hCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 4677889999999999999654321 1345778999999999998877656799999999999999999999999999
Q ss_pred Hhc
Q 042283 79 MTK 81 (82)
Q Consensus 79 l~~ 81 (82)
+.+
T Consensus 421 l~~ 423 (425)
T PRK08088 421 FDE 423 (425)
T ss_pred HHh
Confidence 863
No 61
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.41 E-value=1.9e-12 Score=90.10 Aligned_cols=75 Identities=20% Similarity=0.424 Sum_probs=63.8
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+|+.+.++||.|+|+++++.+.. ...+..++..|+++|+++.+.+ .+++||.||+++|++|+|++++++++++.+
T Consensus 321 ~~~~~~~vrg~G~~~~i~~~~~~---~~~~~~~~~~l~~~Gv~~~~~g--~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 321 RYNVFSEIRGKGLLIGAVLTEAY---QGKAKQFVNAAAEEGVIALIAG--PNVVRFAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred cCCCeEeeecCceEEEEEEcCch---hhHHHHHHHHHHHCCeEEeecC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 36778999999999999997531 1246688899999999998764 589999999999999999999999999863
No 62
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.41 E-value=1.6e-12 Score=90.68 Aligned_cols=74 Identities=23% Similarity=0.458 Sum_probs=62.6
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+++.+.++||.|+|+++++.++. ...+..+.+.|+++|+++.+++ .+++||.||+++|++|++++++++++++.
T Consensus 325 ~~~~~~~vrg~Gl~~~~~l~~~~---~~~~~~~~~~l~~~Gv~v~~~g--~~~lRl~p~~~~t~~~i~~~~~~l~~~l~ 398 (406)
T PRK12381 325 RYGLFSEIRGLGLLIGCVLNAEY---AGKAKQISQEAAKAGVMVLIAG--PNVVRFAPALNISEEEITTGLDRFARACE 398 (406)
T ss_pred hCCCEEEEecCeEEEEEEecCch---hhHHHHHHHHHHHCCcEEeeCC--CCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 35678899999999999997531 1245678899999999998764 58999999999999999999999999885
No 63
>PLN02624 ornithine-delta-aminotransferase
Probab=99.36 E-value=6.1e-12 Score=89.68 Aligned_cols=76 Identities=22% Similarity=0.409 Sum_probs=62.7
Q ss_pred CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
++| .+.++||.|+|++|++..+. .....+..+.+.|+++||++.+.+ +++|||+||+++|++||++++++|++++.
T Consensus 367 ~~~~~i~~vrg~G~~~~i~l~~~~-~~~~~a~~~~~~L~e~GV~v~p~~--~~~lR~~p~l~~t~e~id~~l~~L~~~l~ 443 (474)
T PLN02624 367 QFPKLIKEVRGRGLLNAVVLNSPK-LGPVSAYDVCLKLKERGLLAKPTH--DTIIRLAPPLSISEDELQECSKALSDVLE 443 (474)
T ss_pred hCCCceEEEEeeEEEEEEEecCCC-cChHHHHHHHHHHHhCCeEEecCC--CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 356 57899999999999995432 112356678889999999998764 68999999999999999999999999875
No 64
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.34 E-value=1.1e-11 Score=85.76 Aligned_cols=71 Identities=23% Similarity=0.427 Sum_probs=61.9
Q ss_pred CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+|.+.++||.|+|+++++..+ .+..+.+.|+++|+++.+.+ .++|||+||+++|++|+++++++|++++.+
T Consensus 324 ~~~~~~v~g~g~~~~i~~~~~------~~~~~~~~l~~~Gv~~~~~~--~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 324 HPLVDHVRGRGLLLGIVLTAP------VAKAVEAAAREAGFLVNAVA--PDVIRLAPPLIITDAQVDAFVAALPAILDA 394 (398)
T ss_pred CCceeeEeeccEEEEEEEecc------HHHHHHHHHHHCCeEEeecC--CCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 567789999999999999532 45678899999999998753 689999999999999999999999999853
No 65
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.31 E-value=1.5e-11 Score=85.39 Aligned_cols=69 Identities=28% Similarity=0.515 Sum_probs=59.1
Q ss_pred CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
++.+.++||.|+|+++++.. .+..+.+.++++|+++.+.+ +++|||+|||++|++|+|+++++|++++.
T Consensus 328 ~~~i~~~~~~g~~~~~~~~~-------~~~~~~~~l~~~Gv~~~~~~--~~~iRi~p~l~~t~e~i~~~~~~l~~~l~ 396 (396)
T PRK04073 328 NPMIKEVRGRGLFIGVELNE-------PARPYCEALKEEGLLCKETH--ETVIRFAPPLVITKEELDWAFEKIKAVLS 396 (396)
T ss_pred CCcccceecceEEEEEEecc-------hHHHHHHHHHHCCeEEecCC--CCEEEEECCcccCHHHHHHHHHHHHHHhC
Confidence 35678899999999999853 24578888999999998753 58999999999999999999999999863
No 66
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.29 E-value=3.1e-11 Score=83.92 Aligned_cols=73 Identities=25% Similarity=0.433 Sum_probs=61.5
Q ss_pred CceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 4 ~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+.+.++||.|+|+++++..+.. ...+..+.+.|.++|+++.+.+ ++++||.||+++|++||++++++|+++++
T Consensus 329 ~~~~~~~g~g~~~~i~~~~~~~--~~~~~~l~~~l~~~Gv~v~~~~--~~~lRi~p~l~~t~~~i~~~l~~l~~~l~ 401 (401)
T TIGR01885 329 PIITEVRGRGLLNAIVIDESKT--GRTAWDLCLKLKEKGLLAKPTH--GNIIRLAPPLVITEEQLDEGLEIIKKVID 401 (401)
T ss_pred CceeEEeecCeeEEEEeccCcc--hhHHHHHHHHHHhCCEEEEecC--CCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence 5678899999999999964321 1246788899999999998763 68999999999999999999999999874
No 67
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.28 E-value=2.9e-11 Score=83.60 Aligned_cols=71 Identities=27% Similarity=0.560 Sum_probs=61.4
Q ss_pred CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
++| .+.++||.|+|+++++..+ +..+.+.|+++||++.+.+ .+.+||+||+++|++++++++++|+++++
T Consensus 317 ~~~~~~~~v~g~G~~~~i~~~~~-------~~~~~~~l~~~GV~~~p~~--~~~lR~~p~~~~~~~~i~~~l~~l~~~l~ 387 (389)
T PRK01278 317 RFPDVIEEVRGKGLLLGLKCVVP-------NRDLVQALRDEGLLTVGAG--DNVVRLLPPLIITEEEIDEALERLERAAE 387 (389)
T ss_pred hCCCceeeEecccEEEEEEEecC-------HHHHHHHHHHCCeEEeecC--CCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 356 6789999999999999532 4578889999999998864 68999999999999999999999999986
Q ss_pred c
Q 042283 81 K 81 (82)
Q Consensus 81 ~ 81 (82)
+
T Consensus 388 ~ 388 (389)
T PRK01278 388 S 388 (389)
T ss_pred h
Confidence 4
No 68
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.18 E-value=2.7e-10 Score=78.78 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=61.9
Q ss_pred CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
++.+.++|+.|+|.++++..+.. ..+..+.+.|+++|+++.+. .+++|||.||++++++++++++++|++++.+
T Consensus 322 ~~~~~~~~~~g~~~~v~~~~~~~---~~~~~~~~~l~~~Gv~v~~~--~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~ 395 (400)
T PTZ00125 322 SPWVKEIRGKGLLNAIVFDHSDG---VNAWDLCLKLKENGLLAKPT--HDNIIRFAPPLVITKEQLDQALEIIKKVLKS 395 (400)
T ss_pred CCCeEEEecccEEEEEEEccCcc---hHHHHHHHHHHHCCeEEeec--CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 56678899999999999964221 24567888999999999875 3689999999999999999999999998853
No 69
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.13 E-value=3.5e-10 Score=78.01 Aligned_cols=69 Identities=26% Similarity=0.555 Sum_probs=59.1
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
+++.+.++||.|+|+++++.. .+.++.+.|+++|+++.+.+ .+.+||.||+++|++|++++++++++++
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~l~~~Gi~v~~~~--~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 307 DKETVTTVRGLGYMIGIETTA-------DLSQLVEAARDKGLIVLTAG--TNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred hCCCeeEEeccceEEEEEecC-------cHHHHHHHHHhCCCEEecCC--CCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 356678999999999999942 24578899999999998764 5899999999999999999999998864
No 70
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.12 E-value=5.1e-10 Score=78.91 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=58.4
Q ss_pred CCCceeee-cccceEEEEEeeeCCCCc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283 2 KYGTIGDA-RGWGFMLGVEFVTDSQLR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV 72 (82)
Q Consensus 2 ~~~~v~~v-Rg~Glm~gie~~~~~~~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~ 72 (82)
+||.+.++ ||.| |++++|.++.... ...+..+...|+++|+++.+.+ .++ +.|||++|++|+|+++
T Consensus 344 ~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~--~~~~l~~t~e~id~~~ 418 (428)
T PRK12389 344 KHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSK--YEA--WFLTTAHTEEDIEETL 418 (428)
T ss_pred hCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCC--CCC--eeecCCCCHHHHHHHH
Confidence 47777777 8888 7799997543211 2346678899999999998764 233 4699999999999999
Q ss_pred HHHHHhHhc
Q 042283 73 DVMDCSMTK 81 (82)
Q Consensus 73 ~~l~~~l~~ 81 (82)
+++++++++
T Consensus 419 ~~l~~~l~~ 427 (428)
T PRK12389 419 EAVDRAFAQ 427 (428)
T ss_pred HHHHHHHHh
Confidence 999999975
No 71
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.12 E-value=4.8e-10 Score=77.14 Aligned_cols=69 Identities=29% Similarity=0.580 Sum_probs=59.4
Q ss_pred CCCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
+++.+.++|+.|+|+.+++.++ +..+.+.+.++|+++.+.+ .+.+||.||++++++++++++++|+++|
T Consensus 309 ~~~~~~~v~~~g~~~~i~~~~~-------~~~~~~~l~~~gv~v~~~g--~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 309 HLECVKNIRGKGLMIGIECTEE-------VAPVIEQLREEGLLVLSAG--PNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred hCCcEEeEeecceEEEEEecch-------HHHHHHHHHHCCeEEecCC--CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 3677888999999999999642 4567888999999998864 5899999999999999999999999875
No 72
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.11 E-value=8e-10 Score=76.65 Aligned_cols=70 Identities=24% Similarity=0.517 Sum_probs=59.5
Q ss_pred ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 5 TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 5 ~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+.++||.|+|+++++..+. .....+++.++++|+++.+.+ +++|||+||+++|+++|+++++++++++.
T Consensus 331 ~~~~~~g~g~~~~i~~~~~~----~~~~~~~~~L~~~GV~v~~~~--~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 331 IVREVRGRGLMLAVELEPEA----GGARQYCEALKERGLLAKDTH--DHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred ceEEEeccceEEEEEEecCc----hhHHHHHHHHHHCCeEEecCC--CCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 45778999999999996542 245678899999999997653 68999999999999999999999999875
No 73
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.10 E-value=5.9e-10 Score=78.45 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=60.6
Q ss_pred CCCceeeecccceEEEEEeeeCCCC--------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQL--------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~--------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
+++.+.++||.|+|+++++.++..+ ....+..+...|+++|+++.+++ .+++++ ++++|++|+|++++
T Consensus 341 ~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~--~~~~~~--~~~~t~~ei~~~~~ 416 (426)
T PRK00062 341 KAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQ--FEAGFV--SAAHTDEDIEKTLE 416 (426)
T ss_pred HcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCC--cCceee--eccCCHHHHHHHHH
Confidence 4677889999999999999754321 12345789999999999998864 356654 59999999999999
Q ss_pred HHHHhHhc
Q 042283 74 VMDCSMTK 81 (82)
Q Consensus 74 ~l~~~l~~ 81 (82)
++++++++
T Consensus 417 ~l~~~l~~ 424 (426)
T PRK00062 417 AARKAFAA 424 (426)
T ss_pred HHHHHHHh
Confidence 99999864
No 74
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.07 E-value=1.3e-09 Score=75.22 Aligned_cols=70 Identities=33% Similarity=0.630 Sum_probs=60.2
Q ss_pred CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+|.+.++||.|+|+++++.. ....+.+.++++|+++.+++ .+.+||+||++++++|+++++++|++++++
T Consensus 325 ~~~~~~~~~~g~~~~i~~~~-------~~~~~~~~l~~~Gv~v~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~ 394 (396)
T PRK02627 325 YPGIKEVRGLGLMIGIELDR-------PAAEIVKKALEKGLLINVTG--DNVLRLLPPLIISKEEIDEAVDRLEEVLKE 394 (396)
T ss_pred CCCeeeeccCcEEEEEEecC-------cHHHHHHHHHHCCeEEeecC--CCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence 56677899999999999932 24578889999999998864 588999999999999999999999998864
No 75
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.04 E-value=2.4e-09 Score=74.55 Aligned_cols=74 Identities=26% Similarity=0.514 Sum_probs=61.2
Q ss_pred CCceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 3 ~~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
++.+.++||.|+|+++++.++. ...+.+++..|+++|+++.+.+ .+.+||.||++++++++++++++|+++++.
T Consensus 327 ~~~~~~~~~~G~~~~~~l~~~~---~~~~~~~~~~l~~~Gv~v~~~g--~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~ 400 (403)
T PRK05093 327 YGVFSEIRGMGLLIGAELKPQY---KGRARDFLNAAAEEGVMVLVAG--PDVLRFAPSLVIEEADIDEGLARFEKAVAK 400 (403)
T ss_pred CCCeEeEeeCceEEEEEecCcc---hhHHHHHHHHHHHCCeEEecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556789999999999996421 1245678899999999998754 589999999999999999999999998853
No 76
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.02 E-value=2.6e-09 Score=74.75 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
+++.+.++||.|+|+++++..+..++ ...+..+.+.|+++||++.+.+ .++++|+|| +|++|++++++
T Consensus 339 ~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~l~~~--~t~~~i~~~~~ 414 (423)
T TIGR00713 339 DTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQ--FEACFLSAA--HTEEDIENTIE 414 (423)
T ss_pred hcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCC--ccceeeECC--CCHHHHHHHHH
Confidence 46677899999999999997532110 1235578889999999987653 467899998 79999999999
Q ss_pred HHHHhHhc
Q 042283 74 VMDCSMTK 81 (82)
Q Consensus 74 ~l~~~l~~ 81 (82)
++++++++
T Consensus 415 ~l~~~l~~ 422 (423)
T TIGR00713 415 AAEEVFAE 422 (423)
T ss_pred HHHHHHhh
Confidence 99999864
No 77
>PRK07046 aminotransferase; Validated
Probab=98.96 E-value=5.5e-09 Score=74.41 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=59.5
Q ss_pred CCCceeeecccceEEEEEeeeCCCCc---------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQLR---------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV 72 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~~---------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~ 72 (82)
+++.+.++||.|+|++++|.++.... ......+...|+++|+++.+. ++.++++|| +|++|||+++
T Consensus 367 ~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---~~~~~~~p~--~t~~did~~~ 441 (453)
T PRK07046 367 RHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF---HNMMLVCPA--TTAADVDRLV 441 (453)
T ss_pred hCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc---cCcEEEeCC--CCHHHHHHHH
Confidence 46777899999999999996532211 234556788899999999874 477889998 8999999999
Q ss_pred HHHHHhHhc
Q 042283 73 DVMDCSMTK 81 (82)
Q Consensus 73 ~~l~~~l~~ 81 (82)
++++++|++
T Consensus 442 ~~~~~~l~~ 450 (453)
T PRK07046 442 AAFDACLGE 450 (453)
T ss_pred HHHHHHHHH
Confidence 999999863
No 78
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=98.94 E-value=2.2e-09 Score=74.92 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=59.1
Q ss_pred CCCceeeeccc--------ceEEEEEeeeCCCCc----hHHHHHHHHHHHHcCceeeecCCC-CCEEEEecCccc-----
Q 042283 2 KYGTIGDARGW--------GFMLGVEFVTDSQLR----KAETLDVMDKMKQMGVLIGKGGFY-GNVFRIAPPLCF----- 63 (82)
Q Consensus 2 ~~~~v~~vRg~--------Glm~gie~~~~~~~~----~~~~~~v~~~~~~~Gll~~~~g~~-~~~i~~~PPL~i----- 63 (82)
.+|.|+++||. |.|++|++.++..+. ......+.+.++++|+++.+.+.+ ...+++.||++|
T Consensus 282 ~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~ 361 (392)
T PLN03227 282 SHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVAN 361 (392)
T ss_pred CCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEec
Confidence 46788999994 447999995432111 113458889999999999875411 134679999999
Q ss_pred ---CHHHHHHHHHHHHHhHhc
Q 042283 64 ---TKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 64 ---~~~eid~~~~~l~~~l~~ 81 (82)
|++|+|++++++++++++
T Consensus 362 ~~~t~eei~~~~~~l~~~~~~ 382 (392)
T PLN03227 362 ASHTREDIDKLLTVLGEAVEA 382 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999998853
No 79
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=98.92 E-value=2.8e-09 Score=74.30 Aligned_cols=73 Identities=26% Similarity=0.428 Sum_probs=65.0
Q ss_pred CCC-ceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 2 KYG-TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 2 ~~~-~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+|| .+.+.||+|.|+++++.+++ ..++++..++-+|+.+..|| ...|||.|.|++.+.+.+.+++++++.|+
T Consensus 410 ~~p~~~~~~RGrGTF~a~d~ps~~-----~Rdk~i~~~~~nGv~~GGCg--~~siRfRPsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 410 KYPGKINNLRGRGTFIAWDCPSGS-----IRDKLILIARLNGVNLGGCG--DKSIRFRPSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred hCchhhhcccccceEEEEeCCChH-----HHHHHHHHHHHcCceecccc--cceeeeccceeehhhhHHHHHHHHHHHhc
Confidence 577 57899999999999997643 67789999999999999886 78999999999999999999999999986
Q ss_pred c
Q 042283 81 K 81 (82)
Q Consensus 81 ~ 81 (82)
.
T Consensus 483 ~ 483 (484)
T KOG1405|consen 483 G 483 (484)
T ss_pred c
Confidence 4
No 80
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=98.87 E-value=2.3e-08 Score=69.14 Aligned_cols=75 Identities=33% Similarity=0.634 Sum_probs=61.4
Q ss_pred CCceeeecccceEEEEEeeeCCCCc---hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 3 YGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 3 ~~~v~~vRg~Glm~gie~~~~~~~~---~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
++.+.++|+.|.|+++++.++..+. ......+.+.++++|+++.+.+ ++.+|+.|++.+|++|++++++++++++
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~--~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 336 HPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG--GNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred CCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC--CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 3567788999999999997542111 1356678899999999998864 6899999999999999999999999874
No 81
>PRK07505 hypothetical protein; Provisional
Probab=98.65 E-value=1.9e-07 Score=65.07 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=54.3
Q ss_pred eeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 7 GDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 7 ~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
.++||.|+++......+ ...+..+.+.|+++|++++++. ...++|||+||+++|++|+++++++|++++++
T Consensus 324 ~~~~g~~~~i~~~~~~~----~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 324 TEQSGSFLPIRLIYIGD----EDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred hcCCCCCCCEEEEEeCC----HHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 45688888864432221 1245678999999999998752 12379999999999999999999999999864
No 82
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=98.55 E-value=6.2e-07 Score=64.40 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=53.0
Q ss_pred CCce-eeecccceEEEEEeeeCCCC--------chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 3 YGTI-GDARGWGFMLGVEFVTDSQL--------RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 3 ~~~v-~~vRg~Glm~gie~~~~~~~--------~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
+|.+ .++|| |++++|..+... .......+.+.|+++|+++.+.+. +. ..||+++|++|||++++
T Consensus 393 ~~~~~~~v~g---~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~-~~---~~psl~ht~~dId~~l~ 465 (474)
T PLN02482 393 HEMCGGYISG---MFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQF-EA---GFTSLAHTEEDIDFTIA 465 (474)
T ss_pred CCEEEcccce---EEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCC-CC---CcCCCCCCHHHHHHHHH
Confidence 3543 56666 889999764211 123456788999999999987542 11 24999999999999999
Q ss_pred HHHHhHhc
Q 042283 74 VMDCSMTK 81 (82)
Q Consensus 74 ~l~~~l~~ 81 (82)
++++++.+
T Consensus 466 al~~~l~~ 473 (474)
T PLN02482 466 AAERVLAR 473 (474)
T ss_pred HHHHHHHh
Confidence 99999864
No 83
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=98.53 E-value=4.1e-07 Score=64.37 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCCceeeecccceEEEEEeeeCCCC---chHHHHHHHHHHHHcCceeeecCCCCCEEEEecCccc----CHHHHHHHHHH
Q 042283 2 KYGTIGDARGWGFMLGVEFVTDSQL---RKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF----TKEDANYLVDV 74 (82)
Q Consensus 2 ~~~~v~~vRg~Glm~gie~~~~~~~---~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i----~~~eid~~~~~ 74 (82)
+++.+.++||.|+++++++...... .......+.+.++++|+++ ||++| |++|||+++++
T Consensus 332 ~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~-------------p~l~is~~ht~~dId~~l~~ 398 (431)
T PRK06209 332 EHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLM-------------PSLVVSYAHGDADIERTIDA 398 (431)
T ss_pred hCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccc-------------ccccccccCCHHHHHHHHHH
Confidence 4677789999999999999743211 1234457788899999864 77888 99999999999
Q ss_pred HHHhHhc
Q 042283 75 MDCSMTK 81 (82)
Q Consensus 75 l~~~l~~ 81 (82)
+++++.+
T Consensus 399 l~~~l~~ 405 (431)
T PRK06209 399 VHGALGV 405 (431)
T ss_pred HHHHHHH
Confidence 9998853
No 84
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=98.51 E-value=8.7e-07 Score=62.97 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=54.4
Q ss_pred CCceeeecccceEEEEEeeeCCCCc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283 3 YGTIGDARGWGFMLGVEFVTDSQLR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV 74 (82)
Q Consensus 3 ~~~v~~vRg~Glm~gie~~~~~~~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~ 74 (82)
+| +.++| .|+|++++|.++..++ .+....+...|+++||++.+...... ......|++|||+++++
T Consensus 348 ~~-v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~----~ls~~ht~~did~~~~a 421 (433)
T PRK00615 348 FP-VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEAS----FLSSAHSMENLDYAQNV 421 (433)
T ss_pred CC-eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccccc----ceecCCCHHHHHHHHHH
Confidence 45 88899 9999999998654321 23456788999999999987532222 23455699999999999
Q ss_pred HHHhHhc
Q 042283 75 MDCSMTK 81 (82)
Q Consensus 75 l~~~l~~ 81 (82)
++++++.
T Consensus 422 ~~~~~~~ 428 (433)
T PRK00615 422 LIDSLEK 428 (433)
T ss_pred HHHHHHH
Confidence 9999863
No 85
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=98.46 E-value=1.2e-06 Score=60.09 Aligned_cols=64 Identities=33% Similarity=0.603 Sum_probs=53.6
Q ss_pred eeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 7 GDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 7 ~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
..+++.|.|+.+++.++ ...+.+.|.++|+++.+.+ .+.+|++|+++.|+++++++++++++++
T Consensus 316 ~~~~~~g~~~~~~~~~~-------~~~~~~~l~~~Gv~v~~~~--~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 316 KEVRGKGLMLGIELEAP-------CKDIVKKALEKGLLVNCAG--PKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred CccccCceEEEEEecCc-------HHHHHHHHHHCCcEEeeCC--CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 35667899999988532 3578888999999999864 5899999999999999999999998864
No 86
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=98.34 E-value=2.7e-06 Score=59.34 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=53.3
Q ss_pred eecccceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecC----C-CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGG----F-YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 8 ~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g----~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
.+++.|.|+.+.+.+. ..+..+.+.+++ +|+++++.. . ..+.||++||+.+|++|+|+++++|++++++
T Consensus 322 ~~~~~~~i~~v~~~~~-----~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 322 HLPNPSHIVPVMVGDP-----VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred cCCCCCCeEEEEeCCH-----HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 3578899988865321 245678888887 599997642 1 2378999999999999999999999998753
No 87
>PRK07179 hypothetical protein; Provisional
Probab=98.04 E-value=3.3e-05 Score=53.91 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=52.0
Q ss_pred eecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeec-CC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG-GF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 8 ~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~-g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
++++.|.+.++++... ..+..+.+.+.++|++.... .+ ..+.+||+|+..+|++|+++++++|++++++
T Consensus 325 ~v~~~~~i~~l~~~~~-----~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 325 NIRSESQIIALETGSE-----RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDE 398 (407)
T ss_pred CCCCCCCEEEEEeCCH-----HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 4567788888886421 13456778899999974321 11 2479999999999999999999999998764
No 88
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=97.99 E-value=3.7e-05 Score=52.60 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=50.2
Q ss_pred cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
...|.|..+.+.+ .....++.+.|.++|+++.+++. ..+.+|++|++.++++|+++++++|++++
T Consensus 316 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 316 DSQSAIQPLIVGD-----NERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred CCCCCEEEEEeCC-----HHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 4567777777632 12456788999999999976321 24789999999999999999999998864
No 89
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=97.95 E-value=5.2e-05 Score=52.80 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=49.2
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..|.++.+.+.. ...+..+.+.+++ +|+++++.. ...+.+|++||+..|++|+|+++++|++++++
T Consensus 325 ~~~~i~~i~~~~-----~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 325 NPSHIVPVIIGD-----AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred CCCCEEEEEeCC-----HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 346677776532 1245678888875 699987642 12368999999999999999999999998753
No 90
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=97.80 E-value=9.9e-05 Score=50.75 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
...+.+.++++|+++...+ ...+.||++||+.++++|++++++++++++++
T Consensus 326 ~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 326 AQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred HHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 4578888999999885321 12378999999999999999999999998753
No 91
>PRK09064 5-aminolevulinate synthase; Validated
Probab=97.76 E-value=0.00017 Score=50.28 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=47.4
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+.+..+.+.+. ..+..+.+.+++ +|+++++... ..+.+|++|++.+|++|+++++++|+++++
T Consensus 327 ~~~iv~i~~~~~-----~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~ 396 (407)
T PRK09064 327 ESHIVPVMVGDP-----EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWA 396 (407)
T ss_pred CCCEEEEEeCCH-----HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 355666655321 245678888875 6999976421 236899999999999999999999999875
No 92
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00016 Score=51.28 Aligned_cols=69 Identities=26% Similarity=0.386 Sum_probs=50.2
Q ss_pred eeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEec--CcccC--HHHHHHHHHHHHHhH
Q 042283 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAP--PLCFT--KEDANYLVDVMDCSM 79 (82)
Q Consensus 6 v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~P--PL~i~--~~eid~~~~~l~~~l 79 (82)
+...+|+|+++|+++..+ .+.....+.+.|+++...+. -...+|++| ++++. +|.+.+.++++++.+
T Consensus 356 i~g~~grgl~ig~~~~~p-------~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i~~~~l 428 (433)
T KOG1401|consen 356 ICGGVGRGLVIGFEFEGP-------VYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTILEKVL 428 (433)
T ss_pred eeeeeeeEEEEEEEEeec-------hhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHHHHHHH
Confidence 444599999999999754 33455556666665544331 124799999 78888 999999999999988
Q ss_pred hc
Q 042283 80 TK 81 (82)
Q Consensus 80 ~~ 81 (82)
.+
T Consensus 429 ~~ 430 (433)
T KOG1401|consen 429 SA 430 (433)
T ss_pred HH
Confidence 63
No 93
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=97.50 E-value=0.00082 Score=46.96 Aligned_cols=61 Identities=26% Similarity=0.286 Sum_probs=46.7
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEec-CcccCHHHHHHHHHHHHHhHh
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP-PLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~ 80 (82)
.++.+.+|.+. . .+..+.+.+.++|+++... .++.||++| ++..|++|+|.++++|+++++
T Consensus 345 ~r~~~v~~~~~-~------~~~~~~~~L~~~gi~v~~~--~~~~iRiS~~~~~nt~~did~l~~~l~~~~~ 406 (406)
T TIGR01814 345 QRGCQLSLTHP-V------PGKAVFQALIKRGVIGDKR--EPSVIRVAPVPLYNTFVDVYDAVNVLEEILD 406 (406)
T ss_pred hcCCeEEEEec-C------CHHHHHHHHHHCCEEEecc--CCCeEEEechhccCCHHHHHHHHHHHHHHhC
Confidence 34556677663 1 2346788888999987643 357999999 899999999999999998763
No 94
>PLN02721 threonine aldolase
Probab=97.41 E-value=0.0014 Score=44.33 Aligned_cols=64 Identities=13% Similarity=0.243 Sum_probs=49.8
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+-|+.+++..... .....+.+.+.++|+.+++.+ .+.+|+++++..+++|+++++++|++++..
T Consensus 289 ~~~~~~~~~~~~~---~~~~~~~~~L~~~gi~v~~~~--~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 289 TNIVYFDITDGSR---ITAEKLCKSLEEHGVLLMPGN--SSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred ceEEEEEccCCcc---ccHHHHHHHHHhCCcEEecCC--CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 4456666643110 134578888999999999863 679999999999999999999999998753
No 95
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=97.39 E-value=0.0014 Score=44.37 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=48.4
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC-CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF-YGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
..|++..+.+..... .....+.+.+.++|+++.+++. ..+.+||.+...++++|++++++.|++++
T Consensus 289 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 289 QSPIIVSFLYPDDPD---FDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred CCCcEEEEECCCCCc---chHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 345666666532110 1345788899999999987631 23789999988899999999999998764
No 96
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=97.33 E-value=0.00099 Score=45.47 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+..+.+.+.++|+++..+. .++++|++++...|++|++.+++.|+++++
T Consensus 322 ~~~v~~~L~~~gi~v~~~~-~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 322 PDEVREKLRERGWRVSVTR-CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred HHHHHHHHHHCCceeccCC-CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 4578888899999998764 467899987778899999999999998875
No 97
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=97.29 E-value=0.0021 Score=44.24 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=47.9
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+.|.+..+.+.. ......+.+.+.++|+.+.+.. ...+.||+++++..+++|+++++++|++++++
T Consensus 323 ~~~~~~~~~~~~-----~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 323 GEHPIIPVMLGD-----AKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred CCCCEEEEEECC-----HHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 455565544321 1235678888999999886431 12368999999999999999999999998753
No 98
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=97.28 E-value=0.0019 Score=45.14 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=42.0
Q ss_pred HHHHHHHHHH-HcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 30 ETLDVMDKMK-QMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 30 ~~~~v~~~~~-~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
.+.++.+.++ ++|+++.+... ....+|++|++..|++|+|.++++|++++++
T Consensus 340 ~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 340 LCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred HHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3567888886 68999986421 2368999999999999999999999988753
No 99
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=97.21 E-value=0.00067 Score=46.87 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 30 ETLDVMDKMKQMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
.+..+.+.+.++|+++.... ...++||++|++..|++|||+++++|
T Consensus 352 ~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 352 RAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred HHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 45678888999999875421 13689999999999999999999864
No 100
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=97.18 E-value=0.002 Score=43.85 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=41.9
Q ss_pred HHHHHHHHHHc-CceeeecC--CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQM-GVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~-Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.+.++ |+.+.+.. ..++.||++|....|++|+++++++|+++++
T Consensus 304 ~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 304 GDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred HHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 56788899988 99987642 1357999999999999999999999999874
No 101
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=97.10 E-value=0.0021 Score=43.29 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=33.1
Q ss_pred HHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 39 KQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 39 ~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
.++|+++.+.+ .+.|||+|++.++++|+++++++++++
T Consensus 301 ~~~gi~~~~~~--~~~lRi~~~~~~~~~~i~~~~~~l~~~ 338 (338)
T cd06502 301 RGEGVLFYAWG--EGGVRFVTHWDTTEEDVDELLSALKAV 338 (338)
T ss_pred hhCCEEEEecC--CCeEEEEeecCCCHHHHHHHHHHHhcC
Confidence 37899998764 489999999999999999999998753
No 102
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=97.02 E-value=0.0032 Score=42.58 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=44.1
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
.|.++.+.+... .....+.+.+.++|+++.+.. ...+.+|++|+...+++|+++++++|+
T Consensus 296 ~~~~~~~~~~~~-----~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 296 CTPIVPVIIGDN-----ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CCCEEEEEeCCH-----HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 455666665321 135578889999999997531 124689999999999999999998763
No 103
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=96.96 E-value=0.0048 Score=42.68 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCceeeec-CCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKG-GFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~-g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.+.++|+.+... .+....||++|....|++|+|.+++.|+++++
T Consensus 299 ~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~ 349 (370)
T PRK05937 299 EQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLE 349 (370)
T ss_pred HHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 456778888999988642 12356899999999999999999999998874
No 104
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=96.93 E-value=0.0044 Score=41.85 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
...++.+.+.++|+.+.+++. .++.+|+.|++..+++|+++++++|+++
T Consensus 295 ~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 295 KAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 456788889999999876421 2479999999999999999999999864
No 105
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=96.72 E-value=0.0063 Score=41.64 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
..+.+.+.++|+++..+. .++.+|+++....|++|+|.++++|++
T Consensus 328 ~~v~~~L~~~gi~v~~~~-~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 328 EEVRKKLRDRGWYVSVTR-CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHCCceeccCC-CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 468888999999998753 467999999999999999999999975
No 106
>PLN02483 serine palmitoyltransferase
Probab=96.67 E-value=0.013 Score=42.34 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....+.+.++++|+.+.+.+. ....+||+++...|++||++++++|+++++
T Consensus 410 ~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~ 465 (489)
T PLN02483 410 KIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGD 465 (489)
T ss_pred HHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 345688889999999986432 126899999999999999999999998864
No 107
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=96.66 E-value=0.01 Score=41.01 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 30 ETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
.+..+.+.+.++|+++.... .....+|+++.+..|++|+++++++|++++++
T Consensus 333 ~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 333 LAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred HHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 35678888999999886321 12257999999999999999999999998753
No 108
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=96.62 E-value=0.0068 Score=41.79 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCceeeecCC---------------------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGF---------------------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~---------------------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+...+.++|+.++.... ..+.+|++|....|++|||++++.|+++++
T Consensus 301 ~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~ 371 (379)
T TIGR03402 301 GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIA 371 (379)
T ss_pred HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 35677778889999875310 136899999999999999999999998875
No 109
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=96.54 E-value=0.024 Score=38.81 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=47.5
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC--CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY--GNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~--~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..|.+..+++.... ....+.+.+.++|++++++... .+.+|++.. +.+|++.++++|+++++.
T Consensus 302 ~~g~~~~i~~~~~~-----~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~~~ 366 (367)
T PRK02731 302 SVGNFILVDFDDGK-----DAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFLAA 366 (367)
T ss_pred CCceEEEEECCCCC-----CHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHhc
Confidence 35778778773211 3557888888999999886432 468999964 889999999999998864
No 110
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=96.47 E-value=0.014 Score=40.49 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.+.++|+.++.+.. ..+.||++|....|++|++.+++.|+++++
T Consensus 335 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~ 394 (398)
T TIGR03392 335 HSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALE 394 (398)
T ss_pred HHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 34677788899999886421 146899999999999999999999998875
No 111
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=96.46 E-value=0.022 Score=39.50 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=46.0
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC----------CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG----------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+-+..+.+... ....+.+.+.++|+.++... ..+..+|++|++..|++|+++++++|+++++.
T Consensus 329 ~~~v~~~~~~~------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 329 GGIISFNVEGV------HPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKF 401 (403)
T ss_pred CceEEEEeCCc------CHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 45666665321 24467788889999887421 01468999999999999999999999987753
No 112
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=96.32 E-value=0.024 Score=37.82 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=45.2
Q ss_pred ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHH
Q 042283 9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
....|.+..+++.... ....+.+.+.++|+.+.++.. .++.+|+.|+.. ++|++.++++++
T Consensus 285 ~~~~g~~~~~~~~~~~-----~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 285 KPSGGFFLWLDLPEGD-----DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred CCCccEEEEEecCCCC-----hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 3455777777775321 344566777788999887531 468999999999 999999999886
No 113
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=96.30 E-value=0.03 Score=40.00 Aligned_cols=60 Identities=22% Similarity=0.401 Sum_probs=42.3
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC--------CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
|.|+.++..+. .++++++.|.+.||.+-+.| ++.+.||++|.+= +-+|++..++.+.-|+
T Consensus 346 GYFIsld~~~G------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P-~leel~~Am~~~~~cv 413 (425)
T PF12897_consen 346 GYFISLDVLDG------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYP-SLEELETAMDVFATCV 413 (425)
T ss_dssp SS-EEEEESTT-------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS--HHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCC------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCC-CHHHHHHHHHHHHHHH
Confidence 78888887653 68899999999999887765 3678999999874 7889999999887765
No 114
>PRK06225 aspartate aminotransferase; Provisional
Probab=96.29 E-value=0.04 Score=38.11 Aligned_cols=65 Identities=11% Similarity=0.294 Sum_probs=46.8
Q ss_pred cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...|.|..+++.... .....+.+.+.++|+.++++. ...+.+|+. +..+++|++++++.|.++++
T Consensus 306 ~~~g~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s--~~~~~e~l~~~~~~l~~~~~ 375 (380)
T PRK06225 306 PSHGNMMVIDISEAG----IDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVS--FSIPREQVEVFCEEFPDVVE 375 (380)
T ss_pred CCCCeEEEEEccccc----CCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEE--eCCCHHHHHHHHHHHHHHHH
Confidence 445778788875321 124567788889999988741 123578887 56689999999999999885
No 115
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=96.24 E-value=0.026 Score=39.26 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.+.++|+.++.+.. ..+.||+++..-.|++|+|.++++|+++++
T Consensus 338 ~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~ 397 (401)
T PRK10874 338 HSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALE 397 (401)
T ss_pred HHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 35677888899999886421 146899999999999999999999998875
No 116
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=96.19 E-value=0.026 Score=39.31 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 32 LDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
..+...+.++|++++..+. ..+++|++|-...|++|++.++++++++++
T Consensus 322 ~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~ 372 (378)
T PRK03080 322 AAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFE 372 (378)
T ss_pred HHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 3466667777888765331 247899999999999999999999999875
No 117
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.018 Score=40.54 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEec-CcccCHHHHHHHHHHHHHhHhc
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAP-PLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~~ 81 (82)
.+.+|.+.+.++||+...- .+++|||.| ||..+-+|+-..++.|+++|+.
T Consensus 352 ~~~~V~qaLi~rGVigD~R--~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t 402 (407)
T COG3844 352 HGYQVMQALIDRGVIGDFR--EPDVLRFGFTPLYVSFVDVWDAVDALEEVLDT 402 (407)
T ss_pred cHHHHHHHHHHcCcccccc--CCCeeeecCccceechhHHHHHHHHHHHHHHh
Confidence 4678999999999998763 589999988 7999999999999999999864
No 118
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=95.96 E-value=0.047 Score=37.42 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCceeeecCC-CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGF-YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.+.++|+.+.+... ..+.+|+.+-.-.+.+|+++++++|++++.
T Consensus 311 ~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 311 FADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred HHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 34678888999999987532 257999998555799999999999999874
No 119
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=95.92 E-value=0.045 Score=37.48 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=42.8
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHH
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
..+.+..+.+... ...++.+.+.++|+.+..... ..+.||+++....|++|+|+++++|
T Consensus 305 ~~~~~~~~~~~~~------~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 305 DRAGVVSFNLEGI------HPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred ccCCeEEEEECCc------CHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 3455666665321 245788888999998864321 2578999999999999999998864
No 120
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=95.85 E-value=0.061 Score=36.51 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=42.1
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC---CCEEEEecCcccCHHHHHHHHHHHH
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY---GNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~---~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
..|.++.+++.. .+.++.+.+.++|+++.++... .+.+|++.. +++|++++++.|+
T Consensus 288 ~~g~~~~~~~~~-------~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 288 SDANFVLIRFPR-------DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred CcCCEEEEecCC-------CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence 357777777742 2456888899999999886422 588999965 8999999998763
No 121
>PRK02948 cysteine desulfurase; Provisional
Probab=95.76 E-value=0.031 Score=38.57 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCceeeecCC---------------------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGF---------------------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~---------------------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+...+.++|+.++.+.. ..+.+|+++....|++|+|.+++.|+++++
T Consensus 303 ~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 373 (381)
T PRK02948 303 GQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGN 373 (381)
T ss_pred HHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 34566677889999985321 136899999999999999999999998875
No 122
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=95.73 E-value=0.033 Score=38.58 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCce-eeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVL-IGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll-~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+..+.+.+.++|++ +++. ..+.+|++. ...+++|+++++++|++++++
T Consensus 320 ~~~~~~~L~e~GI~~ir~~--~~~~iRis~-~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 320 GYFLYEELKKRGIHGIRSG--QTKYFKLSV-YGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred cHHHHHHHHhCCCccccCC--cceEEEEEe-cCCCHHHHHHHHHHHHHHHHh
Confidence 34688899999997 6653 256899997 468999999999999998753
No 123
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=95.67 E-value=0.12 Score=35.29 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=42.9
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
|.+.-+++ +. .....+.+.+.++|++++++.. ..+.+|++.. +.+|+++++++|+++++
T Consensus 299 ~~~i~~~~-~~-----~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 299 ANFVLVDV-TP-----MTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIVE 361 (361)
T ss_pred ceEEEEEC-CC-----CCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHhC
Confidence 45555666 21 1355788888999999987531 2468999955 88999999999998763
No 124
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=95.57 E-value=0.048 Score=37.68 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCceeee---cC--------------C----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGK---GG--------------F----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~---~g--------------~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+...+.++|+.++. |. . ...+||+++....|++|+|++++.|+++++
T Consensus 304 ~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~ 374 (382)
T TIGR03403 304 GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQ 374 (382)
T ss_pred HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 44566677889999984 21 0 136799999999999999999999998774
No 125
>PLN02822 serine palmitoyltransferase
Probab=95.46 E-value=0.075 Score=38.45 Aligned_cols=51 Identities=14% Similarity=0.021 Sum_probs=40.6
Q ss_pred HHHHHHHHHH-HcCceeeecCC-------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMK-QMGVLIGKGGF-------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~-~~Gll~~~~g~-------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....+++.++ ++|+++.+... .+..+|++-....|++||+++++++++++.
T Consensus 418 ~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~ 476 (481)
T PLN02822 418 LLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAA 476 (481)
T ss_pred HHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 3567888887 88999986421 134699998888999999999999998875
No 126
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=95.39 E-value=0.071 Score=37.12 Aligned_cols=50 Identities=20% Similarity=0.097 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..+...+.++|+.+.......+++|+++-...|++|+|.+++.|++.+..
T Consensus 309 ~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 309 KKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred HHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 56667888999998443222578999999999999999999999998753
No 127
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=95.37 E-value=0.058 Score=37.32 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCceeeecC-------------CCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 31 TLDVMDKMKQMGVLIGKGG-------------FYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g-------------~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
+..+.+.+.++|++++.+. ...+.+|++|....|++|++.++++|
T Consensus 340 ~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 340 PQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 4568888999999998651 13468999999999999999998864
No 128
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=95.34 E-value=0.072 Score=37.45 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHHHHHHc-CceeeecC----------CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQM-GVLIGKGG----------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~-Gll~~~~g----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.+.++ |+.++.+. .....+|++|.+.-|++|++.+++.|+++++
T Consensus 357 ~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~ 417 (424)
T PLN02855 357 PTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIA 417 (424)
T ss_pred HHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 44677888777 99887421 0136799999999999999999999998875
No 129
>PRK06108 aspartate aminotransferase; Provisional
Probab=95.33 E-value=0.13 Score=35.33 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=43.8
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
|++.-+++.... ....+++.++ ++|+++.++.. ..+.+|++... +++++++++++|.++++
T Consensus 316 g~~~~~~l~~~~-----~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 316 AMYAFFRIPGVT-----DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred eEEEEEeCCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 555556664221 2446777765 58999977421 25789999887 99999999999999875
No 130
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=95.32 E-value=0.12 Score=36.50 Aligned_cols=62 Identities=31% Similarity=0.441 Sum_probs=49.5
Q ss_pred cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEec-CcccCHHHHHHHHHHHHHhHh
Q 042283 10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP-PLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~P-PL~i~~~eid~~~~~l~~~l~ 80 (82)
.-+|.-+.+.|..+ ...+...+.++|++...- ++|+||++| ||.=|-.++-.+++.|.++++
T Consensus 398 ~erGcQLsl~Fssp-------~~~vfqeL~krGv~~DkR--~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d 460 (465)
T KOG3846|consen 398 DERGCQLSLYFSSP-------TPKVFQELHKRGVIGDKR--RPNVIRVAPVPLYNTFSDVYIFVNALNEAMD 460 (465)
T ss_pred ccccceEEEEeCCC-------chHHHHHHHHcCeecccc--CCCceEeecchhhccHHHHHHHHHHHHHHHH
Confidence 34467777777553 347889999999998763 699999999 577788999999999988875
No 131
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=95.26 E-value=0.12 Score=35.41 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCceeeecCC-CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKGGF-YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
...+.+.+.++|+.++++.. ..+.+|+..---.+++|++.+++.|++++++
T Consensus 312 ~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~ 363 (368)
T PRK13479 312 FKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYW 363 (368)
T ss_pred HHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 35788899999999987531 2468999864456899999999999998863
No 132
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=95.25 E-value=0.094 Score=36.41 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..++.+.+.++|+.+........++|+++-...|++|+|.++++|++.++.
T Consensus 298 ~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 298 EKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred hHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 356667888999955443222468999999999999999999999987653
No 133
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=95.23 E-value=0.12 Score=35.63 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.|.++|+++.+++ ..+.+|+.- .+.++++.++++++++++
T Consensus 318 ~~~~~~~l~~~Gv~v~~~~-~~~~iRi~~---~~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 318 RHAVWQGLLDRGVLIRDVG-IPGWLRVTI---GTPEENDAFLAALAEVLA 363 (368)
T ss_pred HHHHHHHHHHCCEEEEeCC-CCCeEEEec---CCHHHHHHHHHHHHHHHH
Confidence 4568888999999998865 468999993 378999999999999875
No 134
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=94.99 E-value=0.25 Score=33.88 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=44.3
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.-|+++-+++.+ ...+.+.+.++|+++.++.. ..+.+|++- -+++++++++++|.++++
T Consensus 296 ~~g~f~~~~~~~--------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~---~~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 296 SAGNFVLAEVGD--------ASAVAEAAQERGVIVRDCTSFGLPECIRITC---GTREETERAVEVLNEVLA 356 (357)
T ss_pred CCCCEEEEECCC--------HHHHHHHHHHCCEEEEECccCCCCCeEEEec---CCHHHHHHHHHHHHHHhc
Confidence 457777777631 34577788899999998642 246899983 368999999999999875
No 135
>PRK10534 L-threonine aldolase; Provisional
Probab=94.93 E-value=0.1 Score=35.28 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.+.++|++++++ ..+|+.--+-+|++|+++++++|++.+.
T Consensus 287 ~~~~~~~l~~~gi~v~~~----~~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 287 AAALGEYMRERNVLINAS----PIVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred HHHHHHHHHHcCeeecCC----ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 456778899999999874 4577766555799999999999997764
No 136
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=94.74 E-value=0.12 Score=37.39 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCceeeecC---CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGG---FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g---~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+..+.+.+.++|+...... ...+.++++|-..-|++|||.++++|+++.+
T Consensus 394 ~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~ 447 (481)
T PRK04366 394 RTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAE 447 (481)
T ss_pred CHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHH
Confidence 35678899999998865221 1256899999999999999999999988764
No 137
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=94.64 E-value=0.35 Score=33.44 Aligned_cols=63 Identities=11% Similarity=0.217 Sum_probs=44.7
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
..|.++-+++..+. ..+..+.+.+.++|++++..+. ..+.+|++-- +++|++.+++++++++.
T Consensus 300 ~~~~f~~~~~~~~~----~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---~~~~~~~~~~al~~~~~ 364 (369)
T PRK08153 300 SATNFVAIDCGRDG----AFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---PDEELDLFAEALPEALE 364 (369)
T ss_pred CcCcEEEEECCCCc----ccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence 34566655553211 2467888999999999964331 2468898843 89999999999999874
No 138
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=94.61 E-value=0.33 Score=35.13 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=50.3
Q ss_pred eecccceEEEEEeeeCCCCc--------hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 8 DARGWGFMLGVEFVTDSQLR--------KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 8 ~vRg~Glm~gie~~~~~~~~--------~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
.+.+.|-|..+-|.+..... .+.-.++...++++|+++.++. -+..-+++ -.|+++||..++++++++
T Consensus 351 ~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~--~ea~flS~--ahte~di~~~~~a~~~~~ 426 (432)
T COG0001 351 TVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQ--FEAGFLST--AHTEEDIDRTLEAADEAF 426 (432)
T ss_pred EEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCcc--ccceeeec--ccCHHHHHHHHHHHHHHH
Confidence 56788999999998643222 1223345668899999998752 24455554 468999999999999988
Q ss_pred hc
Q 042283 80 TK 81 (82)
Q Consensus 80 ~~ 81 (82)
++
T Consensus 427 ~~ 428 (432)
T COG0001 427 KE 428 (432)
T ss_pred HH
Confidence 63
No 139
>PRK05764 aspartate aminotransferase; Provisional
Probab=94.51 E-value=0.36 Score=33.39 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=37.3
Q ss_pred HHHHHHHHH-HcCceeeecCCC--CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMK-QMGVLIGKGGFY--GNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~-~~Gll~~~~g~~--~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..++...++ ++|+.+.++... .+.+|++ +..+++++++++++|.+++++
T Consensus 340 ~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 340 SLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLERIERFLES 391 (393)
T ss_pred HHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence 356776665 579998875322 4789998 456899999999999998863
No 140
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=94.44 E-value=0.18 Score=35.70 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCceeeecC--------CCCCEEEEecCc----ccCHHHHHHHHHHHHHhHhc
Q 042283 32 LDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPL----CFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL----~i~~~eid~~~~~l~~~l~~ 81 (82)
..+.+.+.++|+++...+ .....||+.+.. -++++|++++++.+++++.+
T Consensus 331 ~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 331 KDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred HHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 445577888999987521 124579999998 66799999999999998864
No 141
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=94.41 E-value=0.35 Score=33.05 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=44.4
Q ss_pred ecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+...|.+.-+++.. ....+.+.+.++|+++.++.. ..+.+||. +-+.+|.+.++++|++.
T Consensus 297 ~~~~g~~i~~~~~~-------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~ 358 (359)
T PRK03158 297 YPSQTNFIFVDTGR-------DANELFEALLKKGYIVRSGAALGFPTGVRIT---IGLKEQNDKIIELLKEL 358 (359)
T ss_pred CCCcCcEEEEECCC-------CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHHHHHHh
Confidence 44557777776631 234677888899999998521 35789998 44999999999999875
No 142
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=94.38 E-value=0.16 Score=35.37 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcC--ceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 30 ETLDVMDKMKQMG--VLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 30 ~~~~v~~~~~~~G--ll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
....+.+.+.++| ++.++.....+.+++.|+ +++++|+|.++++|++.+
T Consensus 313 ~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~-~~~~~e~~~~~~~l~~~~ 363 (363)
T TIGR01437 313 TAADVVQALRQGEPAIYTRGYKANEGIIEIDPR-SVTGGQLDIIVERIREIV 363 (363)
T ss_pred CHHHHHHHHhcCCCCEEEeeeeecCCeEEEEee-cCCHHHHHHHHHHHHHhC
Confidence 3567888888777 777753334678999999 577999999999998753
No 143
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=94.37 E-value=0.14 Score=36.58 Aligned_cols=50 Identities=14% Similarity=0.288 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCceeeecC-------CCCCEEEEecCcccC----HHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGG-------FYGNVFRIAPPLCFT----KEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g-------~~~~~i~~~PPL~i~----~~eid~~~~~l~~~l~ 80 (82)
...+...+.++|+++...+ ..+..||+.|+...+ ++|++++++.|.+++.
T Consensus 347 ~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~ 407 (452)
T PTZ00094 347 GSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVK 407 (452)
T ss_pred HHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3456666767899985321 124689999988876 9999999999999885
No 144
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=94.33 E-value=0.23 Score=34.54 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCceeeecC--CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
...+.+.+.++|+.+.+.. ..++++|+..-...|++|++.++++|++++++
T Consensus 308 ~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 308 AATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred HHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 4567778888999875431 12568999999999999999999999998764
No 145
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=94.33 E-value=0.28 Score=34.22 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCceeeecC----------CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 31 TLDVMDKMKQMGVLIGKGG----------FYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
...+...+.++|+.++... ..+..+|++|.+.-|++|+|.++++|++..
T Consensus 344 ~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~ 402 (406)
T PRK09295 344 AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIH 402 (406)
T ss_pred HHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 3456677788999887421 013579999999999999999999998764
No 146
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=94.28 E-value=0.3 Score=33.53 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+..+.+.+.++|++++.++ ..+.+|++ +.-+.+|.+.++++|++.++
T Consensus 286 ~~~l~~~l~~~GI~vr~~~-~~~~lRis--i~~~~~e~~~l~~al~~~~~ 332 (339)
T PRK06959 286 AAALHAALARRGIWTRYFA-PPPSVRFG--LPADEAEWQRLEDALAECVP 332 (339)
T ss_pred HHHHHHHHHhCCeEEEECC-CCCeEEEE--CCCCHHHHHHHHHHHHHHHH
Confidence 3568889999999999875 45689998 33578899999999988764
No 147
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=94.09 E-value=0.46 Score=32.91 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=42.2
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
-|.++-+++.... ....+.+.+.++|++++.+ .+.+|+.- -+.+++++++++|.+++..
T Consensus 313 ~g~f~~~~l~~~~-----~~~~~~~~l~~~gi~v~~~---~~~lRls~---~~~~~~~~~l~~l~~~l~~ 371 (374)
T PRK02610 313 AANFLYLRLSQDA-----ALAALHQALKAQGTLVRHT---GGGLRITI---GTPEENQRTLERLQAALTQ 371 (374)
T ss_pred cceEEEEeCCCCC-----CHHHHHHHHHHCCEEEEeC---CCeEEEeC---CCHHHHHHHHHHHHHHHhh
Confidence 3566556664211 2456778889999999864 57899982 3567899999999998753
No 148
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=94.08 E-value=0.37 Score=32.80 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.+.++|++++..+. ..+.+|+.-. +++++++++++|++++.
T Consensus 304 ~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 304 AAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 45678888999999977642 2468999743 78999999999999875
No 149
>PRK03321 putative aminotransferase; Provisional
Probab=93.89 E-value=0.42 Score=32.62 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=44.4
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.|+++-+.+.. ....+.+.+.++|+++.+++ .+.||+. +-+.++.++++++++++++
T Consensus 294 ~g~~i~i~l~~-------~~~~~~~~l~~~gI~v~~~~--~~~iRi~---~~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 294 QANFVWLPLGE-------RTADFAAAAAEAGVVVRPFA--GEGVRVT---IGAPEENDAFLRAARAWRA 350 (352)
T ss_pred CCCEEEEeCCC-------CHHHHHHHHHHCCEEEEccC--CCcEEEe---eCCHHHHHHHHHHHHHHhc
Confidence 47777666631 24578888899999998864 4569999 4799999999999999875
No 150
>PLN02955 8-amino-7-oxononanoate synthase
Probab=93.88 E-value=0.44 Score=34.85 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 29 AETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
..+..+.+.|+++|+++.+.. .....+|++-.---|++||+.++++|.++.+
T Consensus 404 ~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~ 460 (476)
T PLN02955 404 EKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLD 460 (476)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHh
Confidence 456778999999999987542 1234699999999999999999999998765
No 151
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=93.78 E-value=0.33 Score=33.20 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=37.7
Q ss_pred HHHHHHHHHHc-CceeeecC------------CCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 31 TLDVMDKMKQM-GVLIGKGG------------FYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 31 ~~~v~~~~~~~-Gll~~~~g------------~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
...+.+.+.++ |+.++... ...+.+|+.+..-.|++|++.++++|++
T Consensus 316 ~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 316 SEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 45678888877 98886531 1347899999999999999999999875
No 152
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.31 Score=34.75 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=46.0
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC----------CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY----------GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~----------~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
++-+.++.+..- ....+...+.++|+.++..... ..++|++|.+.=|++|+|.++++|++...
T Consensus 332 r~~~vsF~v~~~------~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 332 RGGIVSFNVKGI------HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred CceEEEEEeCCC------CHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 444555555321 3667888999999777753211 23499999999999999999999998764
No 153
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=93.69 E-value=0.23 Score=33.55 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCceeeecC--CCCCEEEEecCccc-CHHHHHHHHHHHHHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGG--FYGNVFRIAPPLCF-TKEDANYLVDVMDCS 78 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g--~~~~~i~~~PPL~i-~~~eid~~~~~l~~~ 78 (82)
....+.+.+.++|.+..+.. .....+|+++-... |++|+|++++.|+++
T Consensus 294 ~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~~ 345 (345)
T cd06450 294 LNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIERA 345 (345)
T ss_pred HHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHhC
Confidence 34578888889865443321 13578999998764 999999999999764
No 154
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=93.69 E-value=0.37 Score=33.41 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCceeeecC--------CCCCEEEEecCcc----cCHHHHHHHHHHHHHhHhc
Q 042283 32 LDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPLC----FTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL~----i~~~eid~~~~~l~~~l~~ 81 (82)
..+.+.+.++|+.+.+.. ...+.+|+.+..+ ++++|++++++.|.+++.+
T Consensus 324 ~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 324 KAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred HHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 355667788999996421 1346899988775 4799999999999998865
No 155
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=93.49 E-value=0.44 Score=34.00 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 29 AETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
..+..+...++++|+++.+.. .....||++|....|++||+.+++.+.++
T Consensus 333 ~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 333 ERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 467778889999999887542 12467999999999999999999999875
No 156
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=93.49 E-value=0.32 Score=34.41 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCceeee----cC-CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 31 TLDVMDKMKQMGVLIGK----GG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~----~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
..++.+.+.++|+.... .. ...+.+|+++....|++|++++++.|++.+
T Consensus 393 ~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 393 AEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred HHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 45788889998876421 11 113689999999999999999999998865
No 157
>PRK07682 hypothetical protein; Validated
Probab=93.47 E-value=0.82 Score=31.53 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=37.4
Q ss_pred HHHHHHHHH-HcCceeeecC---C-CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMK-QMGVLIGKGG---F-YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~-~~Gll~~~~g---~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
...+.+.++ ++|+.+.++. . ..+.+|++-. .+++++++++++|.+++++
T Consensus 323 ~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 323 SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA--TSLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence 346777765 6899998752 1 2578999844 4799999999999999865
No 158
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=93.27 E-value=0.47 Score=32.46 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=41.0
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
|+++-+++.... ....+++.+.++|+++.++.. ..+.+|+. +..++++++++++++.+
T Consensus 288 ~~~~~~~~~~~~-----~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~--~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 288 TFYLWVKVPSGI-----DAKDYALRLLENGIVVAPGENFGSGEEGYVRVA--LVPTLEECEEALRLWER 349 (350)
T ss_pred EEEEEEECCCCC-----CHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHhc
Confidence 666667664321 245788888899999987432 14678986 34578999999998875
No 159
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=93.19 E-value=0.56 Score=32.28 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=39.5
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCC----------CEEEEecCcccCHHHHHHH
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYG----------NVFRIAPPLCFTKEDANYL 71 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~----------~~i~~~PPL~i~~~eid~~ 71 (82)
.++-+..+.+.. . ....+.+.+.++|+.+....... .++|++|....|++|+|++
T Consensus 307 ~~~~i~~~~~~~-~-----~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 307 RRPSIVSFNLPG-S-----DADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp BGTTEEEEEETT-S-----SHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred cccceEEEeecC-C-----CHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 345566666622 1 35678888888899988732222 7999999999999999975
No 160
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=92.90 E-value=0.51 Score=32.62 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
..+...+.++|+.....-...+++|+++-.-.|++|+|.++++|++.
T Consensus 307 ~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 307 KEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred HHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 44556778899974332112478999999999999999999999884
No 161
>PRK06836 aspartate aminotransferase; Provisional
Probab=92.89 E-value=0.53 Score=32.81 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
...+++.+.++|+.+.++.. .++.+||.-- .+++++++++++|.+++++
T Consensus 341 ~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~ 391 (394)
T PRK06836 341 DVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAFEKLAKE 391 (394)
T ss_pred HHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 44567888899999988632 2467998764 6899999999999999864
No 162
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=92.79 E-value=0.45 Score=33.16 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+..+.+.+.++|+...+.+ .+.++++..+- .|++|++.++++|++++.
T Consensus 333 ~~~~~~~L~~~gI~~~~~~-~~~i~ri~~~g-~t~~di~~l~~aL~~i~~ 380 (387)
T PRK09331 333 GFFLYEELKKRGIHGIKPG-ATKEFKLSTYG-LTWEQVEYVADAFKEIAE 380 (387)
T ss_pred chhHHHHHHHcCceEEccC-CceEEEEEecc-CCHHHHHHHHHHHHHHHH
Confidence 3568888999999854432 34566666644 899999999999998865
No 163
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=92.76 E-value=1.2 Score=31.43 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=44.1
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC-----CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY-----GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~-----~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
-|+++-+++.. ....+...+.++||.+.++... ++.+|+.-.. .+++++++++++|.++++
T Consensus 365 gg~f~~~~l~~-------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 365 DGLNLWLPLDT-------DSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINRLAADLHQALN 430 (431)
T ss_pred CeEEEEEECCC-------CHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence 36776666632 1346777888999999884311 3578888544 579999999999999886
No 164
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=92.76 E-value=0.76 Score=31.29 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=42.5
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC----CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY----GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~----~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.|.+.-+.+. ....+.+.+.++|+.++++... .+.+|++ +-+.++.+.++++|++.++
T Consensus 271 ~g~f~~~~~~--------~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~al~~~~~ 332 (332)
T PRK06425 271 SANFITFMIP--------DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIA---IRRRSFNIKLVNALRNFLN 332 (332)
T ss_pred CceEEEEEcC--------CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHhC
Confidence 4555555542 1356788888999999986432 3689988 5578999999999998763
No 165
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=92.75 E-value=0.56 Score=32.59 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..+.+.+.++|++++++ .+.+|++ +=+.+|.+.++++|++.++.
T Consensus 312 ~~~~~~l~~~GI~Vr~~---~~~iRis---~~~~~~~~~l~~al~~~~~~ 355 (366)
T PRK01533 312 GEIYEACAHAGFIIRPF---PNGVRIT---VGTREQNEGVISVLQQHFEN 355 (366)
T ss_pred HHHHHHHHHCCcEEccC---CCceEEe---CCCHHHHHHHHHHHHHHHHh
Confidence 46788899999999985 5779988 77889999999999998864
No 166
>PRK07324 transaminase; Validated
Probab=92.66 E-value=2 Score=29.79 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=37.5
Q ss_pred HHHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
...+++.++ ++||++.++.. ..+.+|+. +..+++.+.+++++|.+++++
T Consensus 319 ~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 319 SEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTETLKKGLKKLSEFLRE 370 (373)
T ss_pred HHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence 345677765 67999988642 24688887 566899999999999998864
No 167
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=92.59 E-value=0.53 Score=32.33 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
..+.+.+.++|++....+ .++.+|+..+- .+++|++.++++|++++
T Consensus 315 ~~~~~~L~~~gI~~~~~~-~~~~~ri~~~g-~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 315 YFLYSELKKRGIHGIKPG-LTRYFKLSTYG-LTWEQVEYVVDAFKEIA 360 (361)
T ss_pred hhHHHHHHHcCceEEcCC-CceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence 468889999999865433 35678888744 79999999999998765
No 168
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=92.45 E-value=1.3 Score=31.99 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=49.4
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecC-------CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGG-------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g-------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
|+++=+++.... ....+.+.+.++|+.+.+.| ...|.+||..... +++++++++..|.+++.+
T Consensus 386 G~flwl~l~~~~-----~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~-~~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 386 GLFLWLELPEGI-----DARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSP-SEEEIEEGIKRLAALLRE 455 (459)
T ss_pred eEEEEEEcCCCC-----CHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 899988887543 36678999999999998843 1356899987765 489999999999988753
No 169
>PRK07908 hypothetical protein; Provisional
Probab=92.12 E-value=0.6 Score=31.91 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 32 LDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..+.+.+.++|+++.++.. ..+.+|++. -+++|+++++++|++.+..
T Consensus 297 ~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~~ 347 (349)
T PRK07908 297 ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILKA 347 (349)
T ss_pred HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHhc
Confidence 4677788899999987532 257899996 4889999999999988754
No 170
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=91.99 E-value=1 Score=31.56 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+..+.+.+.++|+++|.+.. ..+.+|++ +=|++|-+.++++|.+++..
T Consensus 304 ~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~AL~~~~~~ 354 (356)
T COG0079 304 AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLAALREVLKG 354 (356)
T ss_pred HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHHHHHHHHhc
Confidence 55788999999999999843 34589988 66899999999999998753
No 171
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=91.99 E-value=1.1 Score=31.43 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=43.0
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCC-----------CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFY-----------GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~-----------~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
|+++-+++.... .....+.+.+.++||++.++... .+.+|+.-. -+++++++++++|.+++.
T Consensus 338 g~fiw~~~~~~~----~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~~~~ 410 (416)
T PRK09440 338 AIFLWLWFKDLP----ITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILAEEVE 410 (416)
T ss_pred ceEEEEECCCCC----CCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 677666664311 02356777788999999875321 247888744 379999999999998875
No 172
>PRK05367 glycine dehydrogenase; Provisional
Probab=91.90 E-value=0.51 Score=37.25 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
.+.++.+.+.++|+..+.. ..+.++++|-.+-|++|||.+++.|.
T Consensus 393 ~~~~i~~~l~~~gi~~~~~--~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 393 DAAAVLARALAAGINLRRV--DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred CHHHHHHHHHHCCceeccc--cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 3567899999999998654 26789999999999999999999986
No 173
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=91.45 E-value=1.2 Score=30.59 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 32 LDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
..+.+.+.++|+.++.++. .++.+|++ +-+++|++.+++++++-
T Consensus 307 ~~~~~~l~~~gv~v~~~~~~~~~~~lRis---~~~~e~~~~l~~al~~~ 352 (354)
T PRK04635 307 DAVFKALWDAGIVARAYKDPRLANCIRFS---FSNRAETDKLIGLIRNQ 352 (354)
T ss_pred HHHHHHHHHCCEEEEECCCCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence 4567788899999987642 25689999 45899999999999763
No 174
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=91.44 E-value=1.6 Score=32.19 Aligned_cols=50 Identities=8% Similarity=0.247 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCceeeecC----C----CCCEEEEecCc----ccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGG----F----YGNVFRIAPPL----CFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g----~----~~~~i~~~PPL----~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.|.+.|+++.... + ....|||.++- -.+++|++++.+.|.++++
T Consensus 383 g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~ 444 (493)
T PRK13580 383 GRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS 444 (493)
T ss_pred HHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence 3466678999999987431 1 15679999998 4579999999999998875
No 175
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=91.39 E-value=0.68 Score=36.77 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
.++.+.+.++|+.++... .+.+++++-..-|++|||.++++|.
T Consensus 422 ~~v~~~L~~~gI~l~~~~--~~~lrvs~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 422 DAIADAAAKVGINLRVVD--ANTVTVSFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred HHHHHHHHHCCCeeEEec--CCeEEEEeeccCCHHHHHHHHHHHc
Confidence 678899999999887653 6789999999999999999999996
No 176
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=91.19 E-value=1.2 Score=30.41 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 32 LDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
..+.+.+.++|+.++++.. ..+.+|+.-. +.++.+.++++|++++
T Consensus 308 ~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 308 AAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAAL 356 (356)
T ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHhC
Confidence 4677888999999987632 2468999855 7899999999998764
No 177
>PRK07568 aspartate aminotransferase; Provisional
Probab=90.90 E-value=1.6 Score=30.15 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHHHH------cCceeeecCC-------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 32 LDVMDKMKQ------MGVLIGKGGF-------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 32 ~~v~~~~~~------~Gll~~~~g~-------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
..+.+.+.+ +||++.++.. ..+.+|++ +..+++++++++++|.++++
T Consensus 332 ~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls--~~~~~~~~~~~~~~l~~~l~ 391 (397)
T PRK07568 332 EDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIA--YVLNEEDLKRAMEILKEALE 391 (397)
T ss_pred HHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEE--EeCCHHHHHHHHHHHHHHHH
Confidence 345555554 6999887421 13689998 45678999999999999875
No 178
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=90.74 E-value=1 Score=30.90 Aligned_cols=42 Identities=19% Similarity=0.394 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHH
Q 042283 31 TLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
...+.+.+.++|++++.++. ..+.+|++-- +++|.+.++++|
T Consensus 306 ~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~---~~~e~~~l~~al 350 (351)
T PRK01688 306 SSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG---TREECQRVIDAL 350 (351)
T ss_pred HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC---CHHHHHHHHHhh
Confidence 35688889999999987642 2468999955 789999999876
No 179
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=90.71 E-value=1.5 Score=30.75 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=40.5
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
|+++=+++.... ....+...+. ++||++.++.. ..+.+|+. +..+++++++++++|.++|
T Consensus 345 ~~f~wi~~~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 345 APYIWVKTPDGM-----SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSRENVLEAMERIKKAL 409 (409)
T ss_pred ceEEEEECCCCC-----CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCHHHHHHHHHHHHhhC
Confidence 455555653211 2345666666 57999887531 23589998 4568999999999998764
No 180
>PRK09265 aminotransferase AlaT; Validated
Probab=90.69 E-value=2.7 Score=29.39 Aligned_cols=67 Identities=15% Similarity=0.062 Sum_probs=44.7
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
|+++-+.+.............+...+.++||++.++.. ..+.+|+.= ..+++++++++++|.+++..
T Consensus 331 g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~~l~rl~~~l~~ 401 (404)
T PRK09265 331 ALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEEAIGRIGRFLSG 401 (404)
T ss_pred ceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHH
Confidence 66666666431100001234566788899999987532 246788874 57899999999999998853
No 181
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=90.41 E-value=2 Score=29.27 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+..+.+.+.++|++++..+ ..+.+|++-. .++++.+++.++|++..++
T Consensus 281 ~~~~~~~l~~~gi~v~~f~-~~~~iRis~~--~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 281 AAALHEFLARRGILTRLFE-QPASLRFGLP--ADEADWARLDQALLAYRKE 328 (330)
T ss_pred HHHHHHHHHHCCeEEEECC-CCCeEEEECC--CCHHHHHHHHHHHHHHHhh
Confidence 4577888999999998764 4678998833 3678899999999877654
No 182
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=90.24 E-value=2.7 Score=29.28 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=44.7
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
-|+++=+++....-........+++.++ ++||++.++.. ..+.+|+. +..+++++++++++|.+.+++
T Consensus 329 ~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis--~~~~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 329 GAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVV--LTVPVVMMEEACSRIQEFCER 399 (401)
T ss_pred eeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEE--EcCCHHHHHHHHHHHHHHHhc
Confidence 4777777764310000002345677775 78999987542 25778887 445689999999999998864
No 183
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=89.93 E-value=3.4 Score=28.43 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCceeeecCCC----CCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 32 LDVMDKMKQMGVLIGKGGFY----GNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~----~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
..+.+.+.++|+.++++... .+.+|+. +-++++.+++++++++.+
T Consensus 305 ~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 305 IDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL 353 (354)
T ss_pred HHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence 46888889999999986422 3578988 678899999999999876
No 184
>PRK07683 aminotransferase A; Validated
Probab=89.66 E-value=2.6 Score=29.31 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=35.9
Q ss_pred HHHHH-HHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhcC
Q 042283 33 DVMDK-MKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 33 ~v~~~-~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~~ 82 (82)
.+... +.++|+.+.++.. ..+.+|+. +..+++++.+++++|.+.+++|
T Consensus 332 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~--~~~~~~~~~~al~~l~~~l~~~ 384 (387)
T PRK07683 332 DFALDLVEEAGLAVVPGSAFSEYGEGYVRLS--YAYSIETLKEGLDRLEAFLQQK 384 (387)
T ss_pred HHHHHHHHhCCEEEcCchhhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHhh
Confidence 45544 5678999987532 24688886 4458999999999999998765
No 185
>PRK06207 aspartate aminotransferase; Provisional
Probab=89.28 E-value=2.8 Score=29.45 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=44.4
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
|+++-+++.... .....+.+.+. ++||++.++.. ..+.+|+.=. .+++++++++++|.+++++
T Consensus 335 g~fl~~~l~~~~----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l~~ 402 (405)
T PRK06207 335 GSYLFPRLPRLA----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLIER 402 (405)
T ss_pred eEEEEEeCcccC----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 677777764211 02456777776 68999988532 2567888854 4799999999999998853
No 186
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=89.25 E-value=1.6 Score=30.55 Aligned_cols=51 Identities=12% Similarity=0.297 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCceeeecC--------CCCCEEEEecC----cccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKGG--------FYGNVFRIAPP----LCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PP----L~i~~~eid~~~~~l~~~l~~ 81 (82)
...+.+.+.++|+.+.... ...+.+|+... ..+|++|++.+++.|++++..
T Consensus 327 ~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 327 GKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred HHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 3567788889999987321 12346787442 357899999999999998753
No 187
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=88.95 E-value=2.9 Score=29.49 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHcCceeeecC-----CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 28 KAETLDVMDKMKQMGVLIGKGG-----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 28 ~~~~~~v~~~~~~~Gll~~~~g-----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+.+.+....++++|+.+.... .....||+.-.-.-|++|||+.++++.++.+
T Consensus 354 a~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr 411 (417)
T KOG1359|consen 354 ARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGR 411 (417)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHH
Confidence 3577888999999999876432 2456788888888999999999999998864
No 188
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=88.80 E-value=2.6 Score=29.45 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=41.0
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
|.++=+++...- ....+.+.+. ++|+++.++.. ..+.+|+. +..++++++++++++.++|
T Consensus 338 ~~f~~v~l~~~~-----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~~ 402 (402)
T TIGR03542 338 APYLWVKTPEGI-----SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AFGKRENIVEACERIKEAL 402 (402)
T ss_pred eeEEEEECCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHhhC
Confidence 555555553211 2346777766 57999988531 24679998 5558999999999998864
No 189
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=88.47 E-value=5.4 Score=27.59 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=44.0
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
..|+++-+++.+ ...+.+.+.++|++++++.. ..+.+|+. +-+.++.+.++++|++...
T Consensus 301 ~~g~f~~~~~~~--------~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris---~~~~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 301 SQGNFLLVRFDD--------AEAAFQALLAAGVVVRDQRAAPRLSDALRIT---LGTPEQNDRVLAALQRTQA 362 (364)
T ss_pred CCCcEEEEEcCC--------HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEe---CCCHHHHHHHHHHHHHHHh
Confidence 457777776631 34677888999999998632 25689988 4578999999999988654
No 190
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=88.22 E-value=3.4 Score=28.35 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCceeeecCCC----CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 32 LDVMDKMKQMGVLIGKGGFY----GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~----~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
..+.+.+.++|++++++... ++.+|+. +-+.++.+.++++|++.++
T Consensus 305 ~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 305 IDLQRALLTQRILIRSCANYPGLDSRYYRVA---IRSAAENERLLAALRNVLT 354 (356)
T ss_pred HHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---EcCHHHHHHHHHHHHHHHc
Confidence 46788888999999876422 3689988 3478999999999998775
No 191
>PRK08361 aspartate aminotransferase; Provisional
Probab=87.97 E-value=5.6 Score=27.61 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=42.3
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
|++.-+++.... -....+...+. ++|+++.++.. ..+.+|+. +..+++++++++++|.+++++
T Consensus 323 ~~~~~~~l~~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 323 AFYVFANIDETG----MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRIS--YATSKEKLIEAMERMEKALEE 390 (391)
T ss_pred EEEEEEECCCCC----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHhc
Confidence 566656664211 02345666676 58999987431 24678887 456889999999999998864
No 192
>PRK09105 putative aminotransferase; Provisional
Probab=87.96 E-value=3.3 Score=28.74 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCceeeec-CCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKG-GFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~-g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
..++.+.+.++|+++... +...+.+|+... ++++++.+++++++.++
T Consensus 322 ~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~~ 369 (370)
T PRK09105 322 AKAVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKVMR 369 (370)
T ss_pred HHHHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHhh
Confidence 356888888999988422 123578999955 78999999999998763
No 193
>PRK08912 hypothetical protein; Provisional
Probab=87.91 E-value=4 Score=28.28 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=42.9
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
|+++-+++..... ......+++.+. ++||++.++.. ..+.+|+.=. -+++++++++++|.+++..
T Consensus 315 ~~~l~~~l~~~~~--~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~--~~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 315 TYFLTVDLAPLGL--AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA--KRDATLDEAVERLAAARRR 386 (387)
T ss_pred ceEEEecccccCC--CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHhc
Confidence 5666666643110 012345677765 57999987532 2467888744 4689999999999998865
No 194
>PLN02409 serine--glyoxylate aminotransaminase
Probab=87.86 E-value=3.2 Score=29.14 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=39.7
Q ss_pred HHHHHHHH-HcCceeeecC-C-CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 32 LDVMDKMK-QMGVLIGKGG-F-YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 32 ~~v~~~~~-~~Gll~~~~g-~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..+.+.+. ++|+.+..+. . .+.++|+..---++++++..++++|+++|.+
T Consensus 320 ~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~ 372 (401)
T PLN02409 320 AEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKD 372 (401)
T ss_pred HHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45665554 6798887542 2 4789999999999999999999999999863
No 195
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=87.83 E-value=2.5 Score=30.79 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 33 DVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 33 ~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+...+.++||++.++.. ..+.+|++ +..+++++++++++|.+.++
T Consensus 464 ~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris--~~~~~~~l~~a~~rl~~~~~ 513 (517)
T PRK13355 464 FALDLLHDKKVLIVQGTGFNWDKPDHFRVV--YLPRLEDLEDAMDRLADFFS 513 (517)
T ss_pred HHHHHHHhCCEEEeCcchhCCCCcCEEEEE--eCCCHHHHHHHHHHHHHHHH
Confidence 344567789999987532 25688888 46899999999999999886
No 196
>PRK14012 cysteine desulfurase; Provisional
Probab=87.75 E-value=0.99 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=26.4
Q ss_pred CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 52 GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 52 ~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+.||+.+....|++|+|.+++.|+++++
T Consensus 350 ~~~iRls~~~~~t~~dvd~~~~~l~~~~~ 378 (404)
T PRK14012 350 HSSIRFSLGRFTTEEEIDYAIELVRKSIG 378 (404)
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998764
No 197
>PLN00175 aminotransferase family protein; Provisional
Probab=87.55 E-value=2.6 Score=29.76 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=36.1
Q ss_pred HHHHHHHHH-HcCceeeecCC-------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMK-QMGVLIGKGGF-------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~-~~Gll~~~~g~-------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+...++ ++||.+.++.. ..+.+||+-. .+++++++++++|.+.++
T Consensus 357 ~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 357 DIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--KDEETLRAAVERMKTKLK 412 (413)
T ss_pred HHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence 346777776 57999887521 2368888854 589999999999999875
No 198
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=87.53 E-value=3.1 Score=29.27 Aligned_cols=66 Identities=12% Similarity=0.043 Sum_probs=42.3
Q ss_pred ceEEEEEeeeCCCCchHHHHHHH-HHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVM-DKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~-~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
|++.=+++.............++ ..+.++||++.++.. ..+.+|+.= ..+++++++++++|.+++.
T Consensus 335 g~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~--~~~~~~l~~al~rl~~~l~ 403 (409)
T PLN00143 335 AFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITF--AVEQSSLEDGLGRLKSFCG 403 (409)
T ss_pred eEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEE--cCCHHHHHHHHHHHHHHHH
Confidence 66776776421000000123344 556789999988532 356788874 4568999999999999885
No 199
>PRK08363 alanine aminotransferase; Validated
Probab=87.49 E-value=2.9 Score=29.14 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=34.2
Q ss_pred HHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 34 VMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 34 v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+...+.++|+.+.++.. ..+.+|++ +..+++++++++++|.+++.+
T Consensus 345 ~~~~l~~~gV~v~~g~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 345 VLDVLHEAHVLFVHGSGFGEYGAGHFRLV--FLPPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred HHHHHHhCCEEEeCchhhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHH
Confidence 34556789999987532 13678888 345789999999999988753
No 200
>PHA02771 hypothetical protein; Provisional
Probab=87.22 E-value=0.3 Score=27.96 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
+.+....++.-=+. .=+++|.+|+++|++|..+++.
T Consensus 7 K~ii~~fF~d~~i~------El~L~F~~~l~ite~ey~ELi~ 42 (90)
T PHA02771 7 KSIIDKFFQDQTII------RINLMFNKEIIVSYNQFEEIIK 42 (90)
T ss_pred HHHHHHHhcccchH------HhhhhcCCCeEecHHHHHHHHc
Confidence 44555555543222 2358899999999999999875
No 201
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=87.10 E-value=6.7 Score=27.32 Aligned_cols=59 Identities=10% Similarity=0.187 Sum_probs=40.6
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
-|.++-+++.... ....+.+.+.++|+.++++.. ..+.+|++-- +.++.+.+++++++.
T Consensus 319 ~~~f~~~~~~~~~-----~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 319 DANFILCRVTSGR-----DAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred CCeEEEEECCCCC-----CHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence 3556555553211 245688888899999988632 2468999844 788899999988763
No 202
>PRK05957 aspartate aminotransferase; Provisional
Probab=86.73 E-value=4.9 Score=27.98 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=42.1
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
|++.-+++..+- ....+++.+. ++|+.+.++.. .++.+|+.=.. .+++++.+++++|.+.++
T Consensus 318 g~~~~~~~~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~ 384 (389)
T PRK05957 318 AFYCFLKVNTDL-----NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLK 384 (389)
T ss_pred eEEEEEeCCCCC-----ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 566666664321 2456777776 58999988531 14578887432 479999999999988875
No 203
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=86.70 E-value=1.2 Score=31.10 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=26.3
Q ss_pred CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 52 GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 52 ~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...||+++....|++|+|.+++.|.++++
T Consensus 348 ~~~vR~S~~~~~t~edid~l~~~l~~~~~ 376 (402)
T TIGR02006 348 HSSIRFTIGRFTTEEEIDYAVKLVKSAID 376 (402)
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999998764
No 204
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=86.49 E-value=3.7 Score=28.81 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=36.3
Q ss_pred HHHHHHHHH-HcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMK-QMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~-~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+++.++ ++|+++.++.. ..+.+|+.= ...+++++++++++.++++
T Consensus 357 ~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~--~~~~e~l~~al~~l~~~~~ 407 (412)
T PTZ00433 357 DVEFYEKLLEEENVQVLPGEIFHMPGFTRLTI--SRPVEVLREAVERIKAFCE 407 (412)
T ss_pred HHHHHHHHHHhcCEEEeCccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence 346778887 58999987642 246788773 4468899999999999885
No 205
>PRK07681 aspartate aminotransferase; Provisional
Probab=86.46 E-value=4.6 Score=28.18 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=40.1
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
|+++=+++.... ...++...+++ +|+.+.++.. ..+.+|+.=. .+++++++++++|.+
T Consensus 322 g~f~~~~l~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 322 SMFVWAEIPKGW-----TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQAVENIRN 384 (399)
T ss_pred eeEEEEECCCCC-----CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 666666663211 24567777776 8999987531 2357888643 578999999999988
No 206
>PRK05367 glycine dehydrogenase; Provisional
Probab=86.36 E-value=3.6 Score=32.68 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+..+.+++.+.|+...... ...+.+++.|--.-|++|||++++++.....
T Consensus 823 ~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~ 874 (954)
T PRK05367 823 TVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRA 874 (954)
T ss_pred CHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHH
Confidence 35678899999998765421 2367899999999999999999999876543
No 207
>PRK12566 glycine dehydrogenase; Provisional
Probab=86.33 E-value=4.1 Score=32.46 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCceeeec-CCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKG-GFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~-g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+..+.+++.++|+..... -+..+.+++.|--.-|++|||++++++.+..++
T Consensus 825 ~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e 876 (954)
T PRK12566 825 EEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAE 876 (954)
T ss_pred HHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 456888888988754321 123789999999999999999999999877643
No 208
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=85.96 E-value=2.5 Score=28.51 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCceeeecCCC-------------------------CCEEEEecCcccCHHHHHHHHHHHH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFY-------------------------GNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~-------------------------~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
....+.+.+.++|+.+...... .+++++....-.|++|++.++++|+
T Consensus 281 ~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 281 SRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred CHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 3567888888999966521100 1589999999999999999999874
No 209
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=85.74 E-value=4.4 Score=27.48 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHc-CceeeecC--CCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 30 ETLDVMDKMKQM-GVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 30 ~~~~v~~~~~~~-Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
....+.+.++++ |+.+.+.. ...+.+|++- =..+++++++++++|
T Consensus 316 ~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 316 DAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 356788888887 99998842 1367899996 689999999999875
No 210
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=85.51 E-value=2.9 Score=28.98 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHH---HHHHHHHHHHHhHh
Q 042283 32 LDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKE---DANYLVDVMDCSMT 80 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~---eid~~~~~l~~~l~ 80 (82)
..+...+.++||+++++.. ..+.+||+-. ..++ |.+.++++|+++++
T Consensus 294 ~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~--~~~~~~~~~~~~~~al~~~~~ 346 (346)
T TIGR03576 294 EIGLDLLRNYGIITITAVGMPGASKTLRFDLA--AKDAERIGDDYLVEAVKDSLK 346 (346)
T ss_pred HHHHHHHHhCCEEEeCCcccCCCCCeEEEEEe--cChHHhcCHHHHHHHHHhccC
Confidence 3455667789999998632 2568998733 3333 79999999998763
No 211
>PRK05839 hypothetical protein; Provisional
Probab=85.42 E-value=5.3 Score=27.67 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=41.0
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
|+++=+++.+ ...+.+.+.+ +|+.+.++.. ..+.+|++=. .+++++.+++++|.++++
T Consensus 309 g~fi~~~~~~--------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 309 TFYVWLPVDN--------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV--YDTPKLEKALEIIKTYLE 373 (374)
T ss_pred eEEEEEeCCC--------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhh
Confidence 5566555531 2356777764 9999987421 1478998853 479999999999999875
No 212
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=84.86 E-value=6.4 Score=27.82 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
.+..++..+.++|+++... ....+|+.--.-+|+++++.....+++.+
T Consensus 319 ~~~~l~~~~~k~gi~lm~~--~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 319 TAEELCKFLEKNGILLMGG--ASRRIRIVLHHQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred CHHHHHHHHHHCCeEEeec--cccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence 4667889999999998764 35568888899999999999999996554
No 213
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=84.79 E-value=3.5 Score=29.12 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=33.7
Q ss_pred HHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 34 VMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 34 v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
....++..|++.... +..+||.-...+|++++|+++..+++.+
T Consensus 299 ~~~~~~~~~~~~~~~---~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 299 LAGALFYRGVLIGAH---GEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred hhchhheeeeeccCC---CceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 344566677776542 2589999999999999999999998764
No 214
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=84.56 E-value=8.3 Score=26.38 Aligned_cols=55 Identities=9% Similarity=0.203 Sum_probs=40.2
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
..|.+.-+.+... ...++.+.+.++|++++.+ .+.+|++ +-+.++.+++++.|++
T Consensus 279 ~~g~f~~~~l~~~------~~~~~~~~l~~~Gi~V~~~---~~~~Ris---i~~~~~~~~~~~~l~~ 333 (335)
T PRK14808 279 SRGNFVFIFMEKE------EKERLLEHLRAKNIAVRSF---REGVRIT---IGKREENDMILKELEV 333 (335)
T ss_pred CCCeEEEEeCCCc------cHHHHHHHHHHCCeEEEEC---CCCeEEe---cCCHHHHHHHHHHHHh
Confidence 3466665555321 2356888899999999975 4679998 6678999999998874
No 215
>PTZ00377 alanine aminotransferase; Provisional
Probab=84.42 E-value=4.3 Score=29.24 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHHHHHcCceeeecCCC-----CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 35 MDKMKQMGVLIGKGGFY-----GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 35 ~~~~~~~Gll~~~~g~~-----~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.++||.+.++... .+.+|++= ..+++++++++++|.+.++
T Consensus 426 ~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~--~~~~e~l~~~l~rl~~~~~ 474 (481)
T PTZ00377 426 LELLESTGIVVVPGSGFGQKPGTYHFRITI--LPPEEQIEEMVKKIKEFHE 474 (481)
T ss_pred HHHHHHcCEEEeCCcccCCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHH
Confidence 45566789999876422 24799874 4778999999999998875
No 216
>PLN02187 rooty/superroot1
Probab=84.30 E-value=5.5 Score=28.72 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=34.6
Q ss_pred HHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 34 VMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 34 v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+...+.++||++.++.. ..+.+|+.= ..+++.+++++++|.++++
T Consensus 391 ~~~ll~~~gV~v~pG~~fg~~~~iRis~--~~~~e~l~~al~rL~~~l~ 437 (462)
T PLN02187 391 CVKLAREENLVFLPGDALGLKNWMRITI--GVEAHMLEDALERLKGFCT 437 (462)
T ss_pred HHHHHhhCCEEEECccccCCCCeEEEEe--CCCHHHHHHHHHHHHHHHH
Confidence 34566889999987532 357888874 4578999999999999875
No 217
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=84.23 E-value=6.2 Score=27.45 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=41.3
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
-|+++-+++.. ....+...++ ++|+.+.++.. ..+.+|+.-- .+++++++++++|.+.+.
T Consensus 325 ~g~f~~~~~~~-------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 325 AGFYLWAKVPG-------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALV--APLAECVEAAERIVDFCR 395 (396)
T ss_pred eeEEEEEECCC-------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence 47777777641 1245666664 68999877531 1367888744 468999999999998874
No 218
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=84.16 E-value=4.7 Score=32.26 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+..+.+.+.+.|+..-... +..+.+++.|--.-|++|||++++++.....
T Consensus 856 ~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~ 906 (993)
T PLN02414 856 PEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRE 906 (993)
T ss_pred HHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHH
Confidence 4678888889888653221 2378999999999999999999999976653
No 219
>PRK08175 aminotransferase; Validated
Probab=83.84 E-value=12 Score=26.12 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=44.6
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecC----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGG----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
-|+++-+++.+.... .....+...++ ++||++.++. ...+.+||.= ..+++.+.++++.|.+.+.+
T Consensus 319 ~g~~i~i~l~~~~~~--~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 319 ASMYVWAKIPEPYAA--MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred EEEEEEEECCcccCC--CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHHh
Confidence 377777877532100 01456776655 6899998752 1245799864 35899999999999998753
No 220
>PRK06107 aspartate aminotransferase; Provisional
Probab=83.55 E-value=6.5 Score=27.48 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHH-HHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 32 LDVMD-KMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 32 ~~v~~-~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..++. .+.++||++.++.. ..+.+|+.=- .++++++++++.|.+.+++
T Consensus 350 ~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~--~~~e~l~~~l~~l~~~l~~ 400 (402)
T PRK06107 350 QDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIA--TSLETLEEACARIERAVAA 400 (402)
T ss_pred HHHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence 34554 45678999988632 2467887755 4799999999999998864
No 221
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=83.55 E-value=8.1 Score=26.44 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 31 TLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
...+.+.+.++|+.++++.. ..+.+|+.- -+.++.+.+++.|++.+
T Consensus 302 ~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 302 ADYVYQGLLERGILVRDFSKVEGLEGALRITV---SSCEANDYLINGLKELL 350 (351)
T ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEc---CCHHHHHHHHHHHHHhh
Confidence 34678888899999987531 246799883 36788899999998754
No 222
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=83.43 E-value=5.5 Score=27.34 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHH
Q 042283 32 LDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
..+.+.+.++|+++.++.. ..+.+|+.-. .+++++++++++|.
T Consensus 317 ~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~~~~~~l~ 363 (364)
T PRK07865 317 WDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--ATDERIAAAVERLA 363 (364)
T ss_pred HHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CCHHHHHHHHHHhh
Confidence 4567788899999987431 2467888854 37999999998874
No 223
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=83.39 E-value=8.5 Score=26.57 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.+.++|+++.++.. ..+.+|+.-. +.++.+.+.+++++.+.
T Consensus 322 ~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l~~i~~ 370 (371)
T PRK05166 322 ASAVAEALLRQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVAALDKVLE 370 (371)
T ss_pred HHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHhh
Confidence 45688888899999987531 2567888855 57778888888877653
No 224
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=83.24 E-value=12 Score=26.23 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=44.0
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHH-HHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKM-KQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~-~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
-|+++-+++.............+...+ .++|+.+.++.. ..+.+|++ +..+++.+++++++|.+.+++
T Consensus 331 ~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis--~~~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 331 GAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRIT--ITVPESMLEEACSRIKEFCER 401 (403)
T ss_pred ceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence 366766776432100000234566664 578999987532 35678888 445789999999999998865
No 225
>PRK06348 aspartate aminotransferase; Provisional
Probab=83.08 E-value=9.5 Score=26.45 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=39.9
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
|++.=+++.... .....+.+.|. ++|+.+.++.. ..+.+|++- ..+++++++++++|.+.
T Consensus 318 g~~~~~~~~~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 318 SIYAFINIKKTG----LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRIEKM 382 (384)
T ss_pred eEEEEEecccCC----CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHHHhh
Confidence 555555553211 02446777776 57999987532 246899985 46899999999998753
No 226
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=82.55 E-value=5.4 Score=31.75 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
+.++.+.+.++|++++.. .++.+.++.--+-|++||+.+++++.
T Consensus 383 ~~~i~~~~~~~gi~l~~~--~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 383 SSELLKAAEEFNINLRAV--DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred HHHHHHHHHHCCCeeeec--CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 567899999999998764 35799999999999999999999984
No 227
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=82.46 E-value=12 Score=25.37 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=35.7
Q ss_pred cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHH
Q 042283 10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
.+.|+|.-+++.+ ..++.+.+.++|+++.+... ..+.+|+... -..++ +.+++++
T Consensus 271 ~~~~~f~~~~~~~--------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~-~~~~~~l 329 (330)
T TIGR01140 271 GGTALFLLVRTPD--------AAALHEALARRGILIRDFDNFPGLDPRYLRFALP--TDEEN-DRLEEAL 329 (330)
T ss_pred CCCCeEEEEEcCC--------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEec--CHHHH-HHHHHhh
Confidence 3457776666532 34688899999999988532 2368999754 23333 6666654
No 228
>PRK12414 putative aminotransferase; Provisional
Probab=81.33 E-value=13 Score=25.75 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=31.0
Q ss_pred HHH-HHHHHcCceeeecCCC------CCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 33 DVM-DKMKQMGVLIGKGGFY------GNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 33 ~v~-~~~~~~Gll~~~~g~~------~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
.++ +.+.++||.+.++... .+.+|++=. .+++++++++++|.+
T Consensus 334 ~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 334 DFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KDDATLVEGARRLCS 383 (384)
T ss_pred HHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence 344 5667899999885311 357888754 479999999998864
No 229
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=81.30 E-value=5.8 Score=27.48 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=40.7
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHH-HHcCceeeecC---C-CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKM-KQMGVLIGKGG---F-YGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~-~~~Gll~~~~g---~-~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
-|+++=+++...-. .....+.+.+ .++||++.++. . ..+.+|+.= ..+++++++++++|.+.|
T Consensus 321 ~g~f~~~~~~~~~~---~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 321 ATMYVWAKLPEPWQ---GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFAL--VHDPDILEEAVERIAAFL 388 (388)
T ss_pred eeEEEEEECCcccC---CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEe--cCCHHHHHHHHHHHHHhC
Confidence 46666666643110 0134566666 56899998852 1 236788873 457999999999998753
No 230
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=81.28 E-value=12 Score=26.88 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=44.5
Q ss_pred cceEEEEEeeeCCCC-chHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 12 WGFMLGVEFVTDSQL-RKAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 12 ~Glm~gie~~~~~~~-~~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
-|++.=+++.+.-.. ..+...++...+++ +||++.++.. ..+.+|+.=.. .+++.+++++++|.+++++
T Consensus 363 ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 363 AGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred eeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence 478888887431110 01223466766664 7999887532 25677776332 4789999999999999864
No 231
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=81.23 E-value=12 Score=25.80 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=38.4
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
|++.-+++.... ....+.+.++ ++|+++.++.. ..+.+|+.-. .+++++.++++++.+
T Consensus 322 ~~~~~v~~~~~~-----~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 322 TFYVWAPVPKGY-----TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT--VPDERIEEAVERIKK 384 (385)
T ss_pred ceEEEEECCCCC-----CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--CCHHHHHHHHHHHhh
Confidence 565666663221 2456777776 58999988521 2468998854 578899999988764
No 232
>PHA02772 hypothetical protein; Provisional
Probab=81.18 E-value=1.4 Score=25.51 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV 74 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~ 74 (82)
..+....++.-=+.. =.++|.+|+.+|++|..+++..
T Consensus 7 k~il~~FFed~~i~e------l~l~F~~~l~ite~e~~eLi~n 43 (95)
T PHA02772 7 KRIIDMFFKEKNLDE------LTLAFKRPLIISENEYNELVGR 43 (95)
T ss_pred HHHHHHHhcccceee------eEEEccCceEecHHHHHHHHcC
Confidence 345555555432322 3588999999999999998763
No 233
>PRK08354 putative aminotransferase; Provisional
Probab=81.17 E-value=11 Score=25.33 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCceeeecCCC--CCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 32 LDVMDKMKQMGVLIGKGGFY--GNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~--~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
..+.+.+.++|++++++... ++.+||. +-+.++.+++++++++.
T Consensus 264 ~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~ 309 (311)
T PRK08354 264 EKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREENEKLIRALREW 309 (311)
T ss_pred HHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence 46778889999999987432 3678876 33556778888877764
No 234
>PLN02656 tyrosine transaminase
Probab=81.12 E-value=8.1 Score=27.15 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=35.1
Q ss_pred HHHHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 34 VMDKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 34 v~~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+...+.++||++.++.. ..+.+|+.=- .+++++++++++|.+++.
T Consensus 356 ~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~~~~~ 402 (409)
T PLN02656 356 CFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEEALGRIKSFYL 402 (409)
T ss_pred HHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHH
Confidence 45677889999988632 2467888755 489999999999999875
No 235
>PRK07550 hypothetical protein; Provisional
Probab=80.48 E-value=11 Score=26.05 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 31 TLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 31 ~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
..++...+. ++|+.+.++.. ..+.+|+.-.. .+++++++++++|.+.
T Consensus 333 ~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 333 SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence 456777664 68999988531 24689999853 5799999999998763
No 236
>PRK08637 hypothetical protein; Provisional
Probab=80.26 E-value=9.8 Score=26.46 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=42.4
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
-|+++-+++.. ....++.+.+. ++||.+...+ .+.+|+.=.. .+++++++++++|.+++.
T Consensus 325 ~g~~~~~~l~~------~~~~~l~~~l~~~~gv~~~~~~--~~~iRi~~~~-~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 325 SGYFMCLKLKG------VDAEELRVHLLEKYGIGTIALN--ETDLRIAFSC-VEEEDIPELFDSIYKAIK 385 (388)
T ss_pred ceEEEEecCCh------HHHHHHHHHHhhhcceEEEecc--CCceEEEeec-CCHHHHHHHHHHHHHHHH
Confidence 36666666631 12456778886 6799877542 5678887554 689999999999999885
No 237
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=80.11 E-value=7.9 Score=27.57 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHH-HHHHHcCceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 33 DVM-DKMKQMGVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 33 ~v~-~~~~~~Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.++ ..+.++||++.++.. ..+.+||.=. .+++++++++++|.+.+.
T Consensus 375 ~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~--~~~~~l~~al~rl~~~~~ 423 (430)
T PLN00145 375 DFCCKLAKEESVVVLPGSALGMKNWLRITFA--IDPPSLEDGLERLKSFCL 423 (430)
T ss_pred HHHHHHHHhCCEEEeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHH
Confidence 455 455578999988532 3578998844 589999999999998875
No 238
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=80.08 E-value=9.8 Score=29.47 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
.+..+.+.+.++|+....++ .+.+.|+-++-.|+++++.++++|.+.
T Consensus 510 ~g~~l~~~L~e~gI~~E~~d--~~~vL~l~s~g~t~~~~~~L~~aL~~f 556 (713)
T PRK15399 510 PAALVAKFLDERGIVVEKTG--PYNLLFLFSIGIDKTKAMGLLRGLTEF 556 (713)
T ss_pred CHHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45677888899999998875 677777777889999999999888754
No 239
>PRK13578 ornithine decarboxylase; Provisional
Probab=80.05 E-value=9.7 Score=29.52 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+..+.+.+.++|+....++ .+.+.|+-++-.|+++++.++++|.+.
T Consensus 517 g~~l~~~L~e~gI~~E~~d--~~~vL~l~s~g~t~~~~~~Lv~aL~~f 562 (720)
T PRK13578 517 ATILANYLRENGIVPEKCD--LNSILFLLTPAEDMAKLQQLVAMLARF 562 (720)
T ss_pred HHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5678888889999998875 677777777899999999999988754
No 240
>PRK08960 hypothetical protein; Provisional
Probab=80.02 E-value=15 Score=25.47 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=42.7
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
-|+++-+++.+... ....+.+.++ ++|+.+.++.. .++.+|++-.. +.+++.++++++.+++.
T Consensus 318 g~~f~~~~~~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~--~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 318 GAFYLYADISAFGG----DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ--SLPRLQEAVERIARGLR 386 (387)
T ss_pred eeEEEEEeccccCC----CHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 36777777643110 1346676665 68999987521 24689988663 78999999999998875
No 241
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=79.84 E-value=10 Score=29.41 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+..+.+.+.++|+....++ .+.+.|+-++-.|+++++.++++|.+.
T Consensus 511 g~~v~~~L~e~gI~~E~~d--~~~iLfl~s~g~t~~~~~~L~~aL~~f 556 (714)
T PRK15400 511 ASIVAKYLDEHGIVVEKTG--PYNLLFLFSIGIDKTKALSLLRALTDF 556 (714)
T ss_pred HHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5677788899999998875 677778888899999999999988753
No 242
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=79.61 E-value=0.5 Score=26.27 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
...+++....++|.++. ..+-..+|+..++.++++.++..|..
T Consensus 8 ~i~~Li~~gK~~G~lT~-----~eI~~~L~~~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 8 AIKKLIEKGKKKGYLTY-----DEINDALPEDDLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHHHHHHSS-BH-----HHHHHH-S-S---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCcCCH-----HHHHHHcCccCCCHHHHHHHHHHHHH
Confidence 34568888889998764 46667889999999999999998864
No 243
>PRK09148 aminotransferase; Validated
Probab=78.59 E-value=12 Score=26.21 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=42.7
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
-|+++-+++..... .....++...++ ++||.+.++.. ..+.+|+.-. .+++++.+++++|.++++
T Consensus 320 ~g~f~~~~l~~~~~--~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~ 389 (405)
T PRK09148 320 ASMFAWAPIPEAFR--HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--ENEQRIRQAARNIKRFLS 389 (405)
T ss_pred eeEEEEEECCCccC--CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 36666666632110 001345666665 68999988531 2467999765 689999999999988875
No 244
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=78.28 E-value=16 Score=25.15 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=38.3
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
|++.-+++.+.- ....+...++ ++|+.+.++.. ..+.+||.= ..+++++.++++.|.+
T Consensus 320 ~~~~~~~l~~~~-----~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 320 TFYVWVPVPEGY-----TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL--TVPDERLEEAVARIKK 382 (383)
T ss_pred ceEEEEECCCCC-----CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEe--cCCHHHHHHHHHHHhh
Confidence 666666664211 2456777765 68999987521 235788884 4578889988888764
No 245
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=77.51 E-value=12 Score=25.97 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=35.3
Q ss_pred HHHHHH-HHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 32 LDVMDK-MKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 32 ~~v~~~-~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..+.+. +.++|+++.++.. .++.+|+.-. -+.+++++++++|.+++++
T Consensus 336 ~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~~ 388 (391)
T PRK07309 336 FKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYMEE 388 (391)
T ss_pred HHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 455654 5578999987531 2568998744 4789999999999998864
No 246
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=77.44 E-value=15 Score=25.07 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHHHHHHcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 34 VMDKMKQMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 34 v~~~~~~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+.+.+.++|+++++++ ...+.+|+.- -+.++.++++++|++..+
T Consensus 289 ~~~~l~~~gi~v~~~~~~~~~~~Ri~~---~~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 289 AYDYLLENGIVVRKLSGRLEGHIRVTV---GKREENDEFIKALKEIKE 333 (337)
T ss_pred HHHHHHHCCEEEEeCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHH
Confidence 6788889999998653 3356899983 367888888888887654
No 247
>PRK06855 aminotransferase; Validated
Probab=77.24 E-value=12 Score=26.64 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=33.1
Q ss_pred HHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 36 DKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 36 ~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..+.++||.+.|... .++.+|++=.. .+++++++++++|.+++.+
T Consensus 382 ~l~~~~gV~v~PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 382 YLLASTGICVVPLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred HHHHHcCEEEecCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHHH
Confidence 456688999887532 23457877543 5899999999999998853
No 248
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=77.23 E-value=10 Score=26.04 Aligned_cols=43 Identities=26% Similarity=0.447 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHH
Q 042283 31 TLDVMDKMKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
...+.+.+.++|+.+.++.. ..+.+|++-. -++++++++++.|
T Consensus 310 ~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~--~~~~~i~~~~~~l 356 (357)
T TIGR03539 310 AWDTVDRLAELGILVAPGDFYGPAGSQHVRVALT--ATDERIAAAVARL 356 (357)
T ss_pred HHHHHHHHHhCCEEECCccccCCCCCCeEEEEec--CCHHHHHHHHHhh
Confidence 34577888899999987532 2478998854 3789999998875
No 249
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=77.05 E-value=4.1 Score=22.43 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred cccCHHHHHHHHHHHHHhHhcC
Q 042283 61 LCFTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l~~~ 82 (82)
+.-+++|.++.++.+..+|.+|
T Consensus 13 mss~ddDf~~Fi~vVksVltdk 34 (72)
T PF12575_consen 13 MSSSDDDFNNFINVVKSVLTDK 34 (72)
T ss_pred cCCCHHHHHHHHHHHHHHHcCC
Confidence 4668999999999999999765
No 250
>PRK09082 methionine aminotransferase; Validated
Probab=77.03 E-value=16 Score=25.37 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=39.8
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHH-HHcCceeeecCC------CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKM-KQMGVLIGKGGF------YGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~-~~~Gll~~~~g~------~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
|+++-+++.+-.+ .....+...+ .++||++.++.. ..+.+|++-. .+++++++++++|.+
T Consensus 319 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~--~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 319 TYFQLVDYSAISD---LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA--KQEETLDAAAERLCQ 385 (386)
T ss_pred eEEEEEeccccCC---CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence 6667677742111 1244566665 578999887531 1367999854 489999999999875
No 251
>PRK08636 aspartate aminotransferase; Provisional
Probab=76.79 E-value=15 Score=25.62 Aligned_cols=66 Identities=9% Similarity=0.087 Sum_probs=43.7
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecC----CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGG----FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g----~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
-|++.-+++.+... ......+...++ ++||.+.++. ...+.+|+.=. .+++++++++++|.++++.
T Consensus 330 ~g~~~~~~l~~~~~--~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 330 ASMFVWAKIPEPAR--HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQAARNIKKFLKE 400 (403)
T ss_pred cceEEEEECCCccC--CCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 47777777642110 001345666544 6899998752 12468898754 5899999999999998853
No 252
>PRK01777 hypothetical protein; Validated
Probab=75.86 E-value=4.2 Score=23.40 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=19.6
Q ss_pred CCCCEEEEecCcccCHHHHHHHH
Q 042283 50 FYGNVFRIAPPLCFTKEDANYLV 72 (82)
Q Consensus 50 ~~~~~i~~~PPL~i~~~eid~~~ 72 (82)
..|+.|-+.|||+++..+...--
T Consensus 66 ~dGDRVeIyrPL~~DPk~~Rr~r 88 (95)
T PRK01777 66 RDGDRVEIYRPLLADPKELRRKR 88 (95)
T ss_pred CCCCEEEEecCCCCCHHHHHHHH
Confidence 47899999999999999887643
No 253
>PLN02724 Molybdenum cofactor sulfurase
Probab=75.38 E-value=18 Score=28.12 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=25.9
Q ss_pred CEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 53 NVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 53 ~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.++|++.-+.-|.+|+|.+++.|++.+-
T Consensus 460 G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 460 GAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred ceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999763
No 254
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=75.26 E-value=19 Score=25.54 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCceeeecC--CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+..+.+.+.++|+.+.++. ..++++|+.===.++.++++.+++.|+=+..
T Consensus 321 ~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 321 AKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred HHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence 5778889999999877542 2358999987778999999999999987654
No 255
>PRK07777 aminotransferase; Validated
Probab=75.17 E-value=14 Score=25.59 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=35.4
Q ss_pred HHHHHHHHH-HcCceeeecCC-------CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMK-QMGVLIGKGGF-------YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~-~~Gll~~~~g~-------~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+++.+. ++||.+.++.. ..+.+|+. +..+++++++++++|.+..-
T Consensus 330 ~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~--~~~~~~~l~~~l~~l~~~~~ 385 (387)
T PRK07777 330 GTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFA--FCKRDDTLDEAIRRLRALRG 385 (387)
T ss_pred HHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEE--ecCCHHHHHHHHHHHHHHhc
Confidence 457788886 57999987531 13578886 45589999999999988653
No 256
>PHA01624 hypothetical protein
Probab=74.46 E-value=3.4 Score=24.26 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.3
Q ss_pred CEEEEecCcccCHHHHHHHHHH
Q 042283 53 NVFRIAPPLCFTKEDANYLVDV 74 (82)
Q Consensus 53 ~~i~~~PPL~i~~~eid~~~~~ 74 (82)
=.+.|.+||.+|++|..+++..
T Consensus 22 l~l~Fk~~leitE~Ey~eLi~~ 43 (102)
T PHA01624 22 FEFEFKDLFETTEEGYRYLLGV 43 (102)
T ss_pred eEEEecCceecCHHHHHHHHcC
Confidence 3689999999999999998864
No 257
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=74.35 E-value=17 Score=25.26 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=39.2
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHHH-HcCceeeecCC----------CCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKMK-QMGVLIGKGGF----------YGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~~-~~Gll~~~~g~----------~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
-|+++-+++. . ....+.+.++ ++||.+.++.. ..+.+|++- +.+++++++++++|.+.
T Consensus 324 gg~f~~~~~~--~-----~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~--~~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 324 AGFYLWPKVP--G-----DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIAL--VAPLEECVEAAERIRSF 392 (393)
T ss_pred eeEEEEEECC--C-----CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEe--cCCHHHHHHHHHHHHHh
Confidence 3667766664 1 1345676665 58999876532 135788875 34799999999999864
No 258
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=73.78 E-value=12 Score=20.35 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYL 71 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~ 71 (82)
....++.+.+.+.|++....|.++....-.||=-||=.||-+.
T Consensus 40 ~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~~~Itl~dI~~a 82 (83)
T PF02082_consen 40 SYLRKILQKLKKAGLIESSRGRGGGYRLARPPEEITLLDIVRA 82 (83)
T ss_dssp HHHHHHHHHHHHTTSEEEETSTTSEEEESS-CCGSBHHHHHHH
T ss_pred HHHHHHHHHHhhCCeeEecCCCCCceeecCCHHHCCHHHHHHh
Confidence 4567889999999998887777677777778888887666543
No 259
>PHA02692 hypothetical protein; Provisional
Probab=73.19 E-value=6 Score=21.65 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.7
Q ss_pred cccCHHHHHHHHHHHHHhHhcC
Q 042283 61 LCFTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l~~~ 82 (82)
+.-+++|.++.++.++.+|..|
T Consensus 13 mss~DdDF~~Fi~vVksVLtDk 34 (70)
T PHA02692 13 LSNSDEDFEEFLNIVRTVMTEK 34 (70)
T ss_pred cCCCHHHHHHHHHHHHHHHcCC
Confidence 3457899999999999999765
No 260
>PRK15029 arginine decarboxylase; Provisional
Probab=73.03 E-value=19 Score=28.08 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+..+.+.+.++|+.+..++ .+.+.++-++-.|+++++.++++|.+.
T Consensus 556 ~~~l~~~L~~~gI~~E~~~--~~~vL~l~s~g~t~~~~~~L~~aL~~~ 601 (755)
T PRK15029 556 AALVTAWLGRHGIVPTRTT--DFQIMFLFSMGVTRGKWGTLVNTLCSF 601 (755)
T ss_pred HHHHHHHHHHcCCEEEecC--CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4578888888999998875 666777777799999999999988754
No 261
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=72.63 E-value=7.9 Score=23.09 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.7
Q ss_pred CCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 52 GNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 52 ~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
...+.+.+||-.++++++.+.+++.+.
T Consensus 100 ~~~i~~g~pLl~~~~d~~~v~~al~~~ 126 (127)
T cd03412 100 FKKIKLGRPLLYSPEDYEEVAAALKDQ 126 (127)
T ss_pred CceEEEccCCCCCHHHHHHHHHHHHhh
Confidence 457999999999999999999988764
No 262
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=72.11 E-value=36 Score=24.93 Aligned_cols=68 Identities=7% Similarity=0.068 Sum_probs=44.0
Q ss_pred cceEEEEEeeeCCCC-c-hHHHHHHHHHHHH-cCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQL-R-KAETLDVMDKMKQ-MGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~-~-~~~~~~v~~~~~~-~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
-|+++=+++...... . -+....+++.+.+ +||.+.++.. ..+.+|+.=. .++++++++++++|.+++.
T Consensus 363 aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa-~~~~~~l~~al~rl~~~l~ 437 (496)
T PLN02376 363 AGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFA-NMDDDTLHVALGRIQDFVS 437 (496)
T ss_pred ceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEee-CCCHHHHHHHHHHHHHHHH
Confidence 368887887432110 0 1122456777765 5999988532 2467887633 2578999999999999885
No 263
>PLN02231 alanine transaminase
Probab=71.01 E-value=17 Score=26.89 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=32.7
Q ss_pred HHHHHH-HcCceeeecCCC-----CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 34 VMDKMK-QMGVLIGKGGFY-----GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 34 v~~~~~-~~Gll~~~~g~~-----~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
++..++ +.||.+.++... ...+|+. +..+++++++++++|.+.++
T Consensus 476 ~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit--~~~~~e~l~eal~RL~~~~~ 526 (534)
T PLN02231 476 YCKRLLNATGIVVVPGSGFGQVPGTWHFRCT--ILPQEDKIPAIVSRLTEFHK 526 (534)
T ss_pred HHHHHHHhcCEEEeCCcccCCCCCCCeEEEE--eCCCHHHHHHHHHHHHHHHH
Confidence 445454 679999886422 2358877 56789999999999998765
No 264
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=70.81 E-value=27 Score=23.74 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=33.5
Q ss_pred HHHHHHHHHH-cCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 31 TLDVMDKMKQ-MGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 31 ~~~v~~~~~~-~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
-..+.+.+++ +|-+....| ..|.+-++|.+ ++++++++++.+.+.
T Consensus 166 ~~~l~~~~~~~~g~l~ff~G-GDN~~~~~~~l--~~~~~~~~i~~i~~~ 211 (254)
T PRK02240 166 YLALMRELRKAHDALSFFVG-GDNFMAPCPGL--SEGDFLDAIEHVREE 211 (254)
T ss_pred HHHHHHHHHHhcCcEEEEec-CceEEEECCCC--CHHHHHHHHHHHhhc
Confidence 3457788888 888777665 47899888765 688888888877654
No 265
>PHA02975 hypothetical protein; Provisional
Probab=70.75 E-value=7.4 Score=21.21 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=18.9
Q ss_pred cccCHHHHHHHHHHHHHhHhcC
Q 042283 61 LCFTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l~~~ 82 (82)
+.-+++|.++.++.++.+|..|
T Consensus 13 msS~DdDF~nFI~vVksVLtdk 34 (69)
T PHA02975 13 LESNDSDFEDFIDTIMHVLTGK 34 (69)
T ss_pred cCCChHHHHHHHHHHHHHHcCC
Confidence 4568999999999999999764
No 266
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=70.06 E-value=17 Score=22.40 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
....++...+.+.|++...-|.+|...--.||--||=-||-+.++
T Consensus 39 ~~L~kIl~~L~~aGlv~S~rG~~GGy~La~~p~eItl~dIi~ave 83 (153)
T PRK11920 39 LFLFKILQPLVEAGLVETVRGRNGGVRLGRPAADISLFDVVRVTE 83 (153)
T ss_pred HHHHHHHHHHHHCCCEEeecCCCCCeeecCCHHHCcHHHHHHHHc
Confidence 456678888888998887777666666667887787776666554
No 267
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=69.30 E-value=24 Score=23.93 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
-..+.+.|.++|-+....| ..|.+-++|++ ++++++.+++.+++.
T Consensus 159 ~~~l~~~~~~~G~L~fylG-GDNi~~v~p~~--~~~~~~~~i~~V~~~ 203 (246)
T PF05165_consen 159 YAKLMKYLEKYGSLAFYLG-GDNIMAVCPDL--DEDDLLDAIEHVEEE 203 (246)
T ss_dssp HHHHHHHHHTTT---EEEE-TTEEEEE-TT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEec-CceEEEECCCC--CHHHHHHHHHHHHhh
Confidence 3467788888887776655 47888888874 688888888887764
No 268
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=68.77 E-value=6.9 Score=19.65 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=14.9
Q ss_pred ecCcccCHHHHHHHHHHH
Q 042283 58 APPLCFTKEDANYLVDVM 75 (82)
Q Consensus 58 ~PPL~i~~~eid~~~~~l 75 (82)
.|||-|+++++..++..+
T Consensus 2 ~~plpi~e~~i~~~~s~v 19 (47)
T PF04688_consen 2 KSPLPIDEEQINQLISAV 19 (47)
T ss_pred CCCCCcCHHHHHHHHHHH
Confidence 379999999999887654
No 269
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=68.74 E-value=21 Score=28.58 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
.+..|.+++.+.|+...... +....+.+.|--.-|++|||++++++.+.
T Consensus 815 ~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I 864 (939)
T TIGR00461 815 EAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAI 864 (939)
T ss_pred CHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHH
Confidence 46789999999998653322 12348899999999999999999988654
No 270
>PF14760 Rnk_N: Rnk N-terminus; PDB: 2PN0_D 3BMB_B.
Probab=68.10 E-value=2.8 Score=20.46 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=12.7
Q ss_pred cCcccCHHHHHHHHHHHH
Q 042283 59 PPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 59 PPL~i~~~eid~~~~~l~ 76 (82)
||++||+.|.+++-..++
T Consensus 2 P~I~Is~~D~~RL~~Ll~ 19 (42)
T PF14760_consen 2 PPIYISELDLERLEALLE 19 (42)
T ss_dssp ---EEEHHHHHHHHHHHC
T ss_pred CCEEECHhhHHHHHHHHh
Confidence 899999999998877665
No 271
>PHA02844 putative transmembrane protein; Provisional
Probab=68.07 E-value=8.7 Score=21.26 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=18.9
Q ss_pred cccCHHHHHHHHHHHHHhHhcC
Q 042283 61 LCFTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l~~~ 82 (82)
+.-+++|.++.++.++.+|..|
T Consensus 13 msS~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 13 LSSENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred cCCchHHHHHHHHHHHHHHcCC
Confidence 4568999999999999999764
No 272
>PF15603 Imm45: Immunity protein 45
Probab=67.89 E-value=10 Score=21.34 Aligned_cols=29 Identities=10% Similarity=0.323 Sum_probs=23.9
Q ss_pred CEEE-EecC---cccCHHHHHHHHHHHHHhHhc
Q 042283 53 NVFR-IAPP---LCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 53 ~~i~-~~PP---L~i~~~eid~~~~~l~~~l~~ 81 (82)
+.++ +-|| .-||++|++.+++++.+-+++
T Consensus 42 ~si~~We~P~e~~~it~~e~q~II~aI~~~~~~ 74 (82)
T PF15603_consen 42 DSIKNWEPPHENEPITIAERQKIIEAIEKYFSE 74 (82)
T ss_pred cccccccCCCCCcccCHHHHHHHHHHHHHHHhc
Confidence 4444 8898 469999999999999988765
No 273
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=67.80 E-value=44 Score=24.19 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=42.2
Q ss_pred cceEEEEEeeeCCCCc-hHHHHHHHHHHH-HcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 12 WGFMLGVEFVTDSQLR-KAETLDVMDKMK-QMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~-~~~~~~v~~~~~-~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
-|+++-+++....... -.....+...++ ++||.+.++.. ..+.+|+.=.. .+++++++++++|.+++.
T Consensus 356 ~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~ 429 (468)
T PLN02450 356 AGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVE 429 (468)
T ss_pred ceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH
Confidence 4767767764211110 012234555555 58999987532 24578876322 578999999999999875
No 274
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=67.49 E-value=6.5 Score=22.10 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=17.5
Q ss_pred EEecC-cccCHHHHHHHHHHHHHhHhc
Q 042283 56 RIAPP-LCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 56 ~~~PP-L~i~~~eid~~~~~l~~~l~~ 81 (82)
.+.++ =++|++|++++.+.+.++|.+
T Consensus 61 ~~~~~~~TLt~~ev~~~~~~i~~~l~~ 87 (94)
T PF03147_consen 61 TYQSPDRTLTDEEVNEIHDKIIKALEK 87 (94)
T ss_dssp EE--SSS---HHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444 899999999999999998864
No 275
>PRK06290 aspartate aminotransferase; Provisional
Probab=67.45 E-value=18 Score=25.55 Aligned_cols=51 Identities=6% Similarity=0.066 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCc-eeeecCCCCCEEEEecC-cccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGV-LIGKGGFYGNVFRIAPP-LCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gl-l~~~~g~~~~~i~~~PP-L~i~~~eid~~~~~l~~~l~~ 81 (82)
...+.+.++++|. ++.+....++.+|+.=. ..-++++-++++++|+++|..
T Consensus 353 ~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (410)
T PRK06290 353 AEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSD 405 (410)
T ss_pred HHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhh
Confidence 4578888988765 44443334567887743 234889999999999999863
No 276
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=67.15 E-value=21 Score=25.35 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=36.5
Q ss_pred HHHHHHHHH-HcCceeeecCCC-----CCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMK-QMGVLIGKGGFY-----GNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~-~~Gll~~~~g~~-----~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
...++..++ +.||.+.|+... .+.+||+ +..++++++++++++.+.+..
T Consensus 337 ~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 337 SEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLARFLAE 391 (393)
T ss_pred HHHHHHHHHHhCCEEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHHHHHHh
Confidence 345666665 568999885322 2568887 888889999999999998764
No 277
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=67.05 E-value=9 Score=24.94 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=22.3
Q ss_pred CCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 50 FYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 50 ~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
.+++++-++||.++++++.+++.+.-.+..
T Consensus 120 hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia 149 (211)
T PF02786_consen 120 HSQDSIEEAPAQTLSDEERQKLREAAKKIA 149 (211)
T ss_dssp TTEEEEEEES-SSS-HHHHHHHHHHHHHHH
T ss_pred ccccceeEeeccccchHHHHHHHHHHHHHH
Confidence 357789999999999999999887755543
No 278
>PHA03054 IMV membrane protein; Provisional
Probab=65.37 E-value=11 Score=20.71 Aligned_cols=21 Identities=5% Similarity=0.295 Sum_probs=18.0
Q ss_pred ccCHHHHHHHHHHHHHhHhcC
Q 042283 62 CFTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 62 ~i~~~eid~~~~~l~~~l~~~ 82 (82)
.-+++|.++.++.+..++..|
T Consensus 14 ss~d~Df~~Fi~vV~sVl~dk 34 (72)
T PHA03054 14 GSPEDDLTDFIEIVKSVLSDE 34 (72)
T ss_pred CCchHHHHHHHHHHHHHHcCC
Confidence 446899999999999999764
No 279
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=65.24 E-value=9.2 Score=21.93 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=21.9
Q ss_pred EecCcccCHHHHHHHHHHHHHhHhc
Q 042283 57 IAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..=++.|++++.+..++.+.++|++
T Consensus 67 ~H~~~~I~~~~f~~~l~~l~~al~~ 91 (116)
T cd00454 67 RHLPFPITEEEFDAWLELLRDALDE 91 (116)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5557899999999999999999864
No 280
>PHA02650 hypothetical protein; Provisional
Probab=64.82 E-value=11 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=18.8
Q ss_pred cccCHHHHHHHHHHHHHhHhcC
Q 042283 61 LCFTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l~~~ 82 (82)
+.-+++|.+++++.++.+|..|
T Consensus 13 msS~DdDFnnFI~VVkSVLtD~ 34 (81)
T PHA02650 13 MSSTDDDFNNFIDVVKSVLSDE 34 (81)
T ss_pred cCCcHHHHHHHHHHHHHHHcCC
Confidence 4568999999999999999764
No 281
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=64.46 E-value=23 Score=25.32 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=33.2
Q ss_pred HHHHHHHHcCceeeec---CCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 33 DVMDKMKQMGVLIGKG---GFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 33 ~v~~~~~~~Gll~~~~---g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
...+.++++|++.+.+ |...+.+|++ |+-++++.|.+++.|.+
T Consensus 316 DC~~~l~~~~I~tr~G~~fga~~ryVRlS--ml~~~d~Fd~l~~rL~~ 361 (363)
T PF04864_consen 316 DCYAVLREAKIITRSGVLFGADSRYVRLS--MLKRDDDFDQLLERLSK 361 (363)
T ss_dssp SHHHHHHCTTEEEEEGGGGTS-TTEEEEE--SSS-HHHHHHHHHHHHC
T ss_pred cHHHHHHhCCcccCCCCccCCCCCeEEEe--ccCCHHHHHHHHHHHHh
Confidence 3556677899998874 4567788887 89999999999999875
No 282
>PRK08068 transaminase; Reviewed
Probab=63.15 E-value=48 Score=22.98 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=38.6
Q ss_pred ceEEEEEeeeCCCCchHHHHHHHHHHHH-cCceeeecC----CCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 13 GFMLGVEFVTDSQLRKAETLDVMDKMKQ-MGVLIGKGG----FYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 13 Glm~gie~~~~~~~~~~~~~~v~~~~~~-~Gll~~~~g----~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
|++.-+++.... ....+.+.+.+ +|+++.++. ...+.+||.-. .+++.+.++++.|.+
T Consensus 323 ~~~~~v~~~~~~-----~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~al~~l~~ 385 (389)
T PRK08068 323 SFFAWMPVPKGY-----TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL--TDEERLREAVERIGK 385 (389)
T ss_pred eEEEEEECCCCC-----CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 455556663211 24578888885 699998742 12468888864 467888888888875
No 283
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=62.69 E-value=36 Score=24.28 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCceeeecC-----------CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGG-----------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g-----------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....+.+++.++|+++.|.. .....+|+. ++=++++++.++.++.+.++
T Consensus 351 tt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn--~~~~~~~ie~Gva~lae~ve 410 (417)
T COG3977 351 TTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMN--YVPEPEKIEKGVAILAEEVE 410 (417)
T ss_pred CHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEe--cCCCHHHHHHHHHHHHHHHH
Confidence 45678899999999998752 123456654 78899999999999988775
No 284
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=62.30 E-value=62 Score=23.99 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=42.6
Q ss_pred ccceEEEEEeee-CCCCc---hHHHHHHHHHHHHcCceeeecC-------CC-CC-EEEEecCcccCHHHHHHHHHHHHH
Q 042283 11 GWGFMLGVEFVT-DSQLR---KAETLDVMDKMKQMGVLIGKGG-------FY-GN-VFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 11 g~Glm~gie~~~-~~~~~---~~~~~~v~~~~~~~Gll~~~~g-------~~-~~-~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
-.|+|+=|++.- ..+++ .+.-..+...+.++||++..+. .+ .+ -+|++=.+ .+.++++++++++..
T Consensus 384 ~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~-a~~e~l~~g~~rf~~ 462 (472)
T KOG0634|consen 384 KAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAF-AEPEKLDEGIERFGS 462 (472)
T ss_pred CcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeec-CCHHHHHHHHHHHHH
Confidence 358999999851 11111 2233445567789999886421 11 22 44544443 366799999999998
Q ss_pred hHhc
Q 042283 78 SMTK 81 (82)
Q Consensus 78 ~l~~ 81 (82)
++++
T Consensus 463 ~ike 466 (472)
T KOG0634|consen 463 VIKE 466 (472)
T ss_pred HHHH
Confidence 8864
No 285
>PF07118 DUF1374: Protein of unknown function (DUF1374); InterPro: IPR009804 This family consists of several hypothetical Sulfolobus virus proteins of around 100 residues in length. The function of this family is unknown.; PDB: 3DJW_B 3DF6_D 2H36_X.
Probab=61.56 E-value=2.7 Score=24.20 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.5
Q ss_pred EEEEecCcccCHHHHHHHHH
Q 042283 54 VFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 54 ~i~~~PPL~i~~~eid~~~~ 73 (82)
++.|.+||.+|++|..+++.
T Consensus 22 ~l~Fk~~l~ite~ef~eLi~ 41 (92)
T PF07118_consen 22 ELKFKEPLEITEEEFEELIG 41 (92)
T ss_dssp EEEEEEEEEEEHHHHHHCC-
T ss_pred eEEecCceEeCHHHHHHHHc
Confidence 68999999999999998765
No 286
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=61.53 E-value=22 Score=18.53 Aligned_cols=49 Identities=4% Similarity=0.068 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...++.+.+.+.|+-+.......+-+.++ +.+.+++.++++..|.+.+-
T Consensus 17 v~~ki~~~L~~~~I~v~~i~~~~s~~~is--~~V~~~~~~~av~~Lh~~f~ 65 (66)
T cd04915 17 VLARGLAALAEAGIEPIAAHQSMRNVDVQ--FVVDRDDYDNAIKALHAALV 65 (66)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCeeEEE--EEEEHHHHHHHHHHHHHHHh
Confidence 67788888999998663221112223333 67899999999999988763
No 287
>PRK09275 aspartate aminotransferase; Provisional
Probab=61.51 E-value=28 Score=25.94 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=34.2
Q ss_pred HHHHHHH-HHcCceeeecCCC---CCEEEEecCcc-cCHHHHHHHHHHHHHhHhc
Q 042283 32 LDVMDKM-KQMGVLIGKGGFY---GNVFRIAPPLC-FTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 32 ~~v~~~~-~~~Gll~~~~g~~---~~~i~~~PPL~-i~~~eid~~~~~l~~~l~~ 81 (82)
..++..+ .+.||.+.|+... ...+|++ |. .+++++.++.++|.+.+++
T Consensus 465 ~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl~~~l~~ 517 (527)
T PRK09275 465 VDLLFRLAEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAIRKLLDE 517 (527)
T ss_pred HHHHHHHHhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHHHHHHHH
Confidence 3455444 4679998876422 3578887 44 7899999999999988753
No 288
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=61.39 E-value=16 Score=26.35 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCcee-e---ecC---------CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLI-G---KGG---------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~-~---~~g---------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....+...++.+|+-- + +.+ ....-+.++-.+-++++|+|.++++|+++++
T Consensus 326 ~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 326 DGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp HHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 4567788889887642 1 110 1125677888899999999999999999874
No 289
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=60.99 E-value=3.4 Score=21.77 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.3
Q ss_pred ccCHHHHHHHHHHHHHhHh
Q 042283 62 CFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 62 ~i~~~eid~~~~~l~~~l~ 80 (82)
-+|++|+.+.++.|++...
T Consensus 9 ~lTeEEl~~~i~~L~~~~~ 27 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPN 27 (61)
T ss_pred HccHHHHHHHHHhhcCCCC
Confidence 3689999999999887653
No 290
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=60.93 E-value=29 Score=20.72 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLV 72 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~ 72 (82)
....++...+.+.|++....|..|...--.||=.||-.|+-+.+
T Consensus 40 ~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~~~Itl~dv~~a~ 83 (135)
T TIGR02010 40 SYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPAEDISVADIIDAV 83 (135)
T ss_pred HHHHHHHHHHHHCCceEEEeCCCCCEeccCCHHHCcHHHHHHHh
Confidence 34567777888888876554544554445556666666555544
No 291
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=59.73 E-value=2.3 Score=26.22 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.2
Q ss_pred EecCcccCHHHHHHHH
Q 042283 57 IAPPLCFTKEDANYLV 72 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~ 72 (82)
=+|||+||++|...++
T Consensus 41 dsPPlnit~edpkkGl 56 (143)
T PF09885_consen 41 DSPPLNITPEDPKKGL 56 (143)
T ss_pred CCCCCcCCccchhhcc
Confidence 4799999999977654
No 292
>TIGR03271 methan_mark_5 putative methanogenesis marker protein 5. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=59.59 E-value=2.4 Score=26.12 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.2
Q ss_pred EecCcccCHHHHHHHH
Q 042283 57 IAPPLCFTKEDANYLV 72 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~ 72 (82)
=+||++||++|...++
T Consensus 40 dsPP~niT~edpk~Gl 55 (142)
T TIGR03271 40 DSPPLNITPEDPKKGL 55 (142)
T ss_pred CCCCCcCCccchhhcc
Confidence 3799999999987654
No 293
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=59.17 E-value=31 Score=19.53 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 28 KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 28 ~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
...+.++.+.|.+.|.+.... ++ |+.+.++++.+..++.+
T Consensus 14 ~~~~~~l~~A~~~~GFf~l~n--hG----------i~~~l~~~~~~~~~~fF 53 (116)
T PF14226_consen 14 EEVAEQLRDACEEWGFFYLVN--HG----------IPQELIDRVFAAAREFF 53 (116)
T ss_dssp HHHHHHHHHHHHHTSEEEEES--SS----------SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEec--cc----------ccchhhHHHHHHHHHHH
Confidence 456788999999999987653 22 56788888888877665
No 294
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=58.65 E-value=12 Score=21.66 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=21.2
Q ss_pred EecCcccCHHHHHHHHHHHHHhHhc
Q 042283 57 IAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
..-++.||+++.+..++.+.++|++
T Consensus 71 ~H~~l~it~~~f~~~~~~~~~al~~ 95 (120)
T PF01152_consen 71 AHAHLGITEEHFDRWLELLKQALDE 95 (120)
T ss_dssp HHTTS-BBHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 5668899999999999999999864
No 295
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=58.46 E-value=53 Score=21.94 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcc---cCHHHHHHHHHHHHHhHhc
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC---FTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~---i~~~eid~~~~~l~~~l~~ 81 (82)
.+..+.+.+-+.|+-..+-.+.+.-+.+.-||. .+-+++..+...+.+.+.+
T Consensus 114 ~A~~vr~~L~~lgL~~f~KTSG~kGlHV~vPl~~~~~~~~~~r~fa~~iA~~l~~ 168 (223)
T cd04866 114 AANLLKEILDALGLTSFVKTSGNKGLQVYIPLPDNKFTYDETRLFTEFIAEYLCQ 168 (223)
T ss_pred HHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555666778985544333477899999998 7778999988888877653
No 296
>PTZ00376 aspartate aminotransferase; Provisional
Probab=58.29 E-value=33 Score=24.02 Aligned_cols=41 Identities=12% Similarity=0.375 Sum_probs=30.0
Q ss_pred HHHHHHHHc-CceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 33 DVMDKMKQM-GVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 33 ~v~~~~~~~-Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+++.+.++ |+.+.+. + |++=. .++.+++++++++|.+++.
T Consensus 361 ~~~~~L~~~~~v~v~p~---~---Ris~~-~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 361 EQVERLIEKYHIYLLDN---G---RISVA-GLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred HHHHHHHHhCCEeecCC---C---eEEEe-ccCHHhHHHHHHHHHHHHh
Confidence 456666655 9988774 2 55521 1899999999999999875
No 297
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=57.94 E-value=21 Score=18.94 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.2
Q ss_pred EEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 54 VFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 54 ~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
.|||.|=-+.+++|...+-..+.+=|
T Consensus 23 GIRFVpiPv~~dee~~~L~s~~~~kL 48 (61)
T PF07131_consen 23 GIRFVPIPVVTDEEFHTLSSQLSQKL 48 (61)
T ss_pred CceeeccccccHHHHHHHHHHHHHHH
Confidence 38899999999999988877766544
No 298
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=57.39 E-value=31 Score=25.20 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCceeeecC-------CCCCEEEEecC----cccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGG-------FYGNVFRIAPP----LCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g-------~~~~~i~~~PP----L~i~~~eid~~~~~l~~~l~ 80 (82)
..++.+.+.+.|+++.... ..+..||+-.| .-++++|++++.+.|.++++
T Consensus 358 ~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 358 GSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT 418 (475)
T ss_pred HHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 3456677778898886431 13567888444 55788999999999999886
No 299
>CHL00183 petJ cytochrome c553; Provisional
Probab=57.22 E-value=14 Score=21.08 Aligned_cols=21 Identities=14% Similarity=0.263 Sum_probs=18.0
Q ss_pred EecCc--ccCHHHHHHHHHHHHH
Q 042283 57 IAPPL--CFTKEDANYLVDVMDC 77 (82)
Q Consensus 57 ~~PPL--~i~~~eid~~~~~l~~ 77 (82)
.+||+ .+|++|++.++.-+..
T Consensus 80 ~MP~f~~~Ls~~ei~~i~aYi~~ 102 (108)
T CHL00183 80 AMPAFGGRLSDEDIEDVANYVLS 102 (108)
T ss_pred ccccccCCCCHHHHHHHHHHHHH
Confidence 68998 8999999999887754
No 300
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=56.43 E-value=38 Score=21.23 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
....++.+.+.+.|++....|..|...--.||=-||-.||-+.++
T Consensus 40 ~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p~~Itl~dIl~aie 84 (164)
T PRK10857 40 SYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVD 84 (164)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCeeccCCHHHCCHHHHHHHHc
Confidence 456678888889998887656555544456666676666555443
No 301
>PRK07337 aminotransferase; Validated
Probab=56.13 E-value=65 Score=22.27 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=41.4
Q ss_pred cceEEEEEeeeCCCCchHHHHHHHHHH-HHcCceeeecCC-----CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 12 WGFMLGVEFVTDSQLRKAETLDVMDKM-KQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 12 ~Glm~gie~~~~~~~~~~~~~~v~~~~-~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
-|+++=+++.............+...+ .++|+.+.++.. ..+.+|+.=. .+++++.+++++|.+++
T Consensus 316 ~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~--~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 316 GAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA--TSMSRLEEAVARLGKLF 387 (388)
T ss_pred eeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence 477777777431100001234566654 578999976432 1357887754 36899999999998875
No 302
>PRK13291 metal-dependent hydrolase; Provisional
Probab=55.99 E-value=14 Score=23.25 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=21.1
Q ss_pred EecCcccCHHHHHHHHHHHHHhHh
Q 042283 57 IAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
|.||=.+|.+++++.++.+++..+
T Consensus 11 ~~~~~~~~~~~~~~~i~~l~~~~~ 34 (173)
T PRK13291 11 FQYPEEITEEQIQEWIAEIEALPN 34 (173)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 789999999999999999887643
No 303
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=54.86 E-value=18 Score=23.22 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCceeeec------------CCCCCEE--EEecCcccCHHHHHHHHHHHHH
Q 042283 29 AETLDVMDKMKQMGVLIGKG------------GFYGNVF--RIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~------------g~~~~~i--~~~PPL~i~~~eid~~~~~l~~ 77 (82)
....++.+.+.++|+-+... ...+..+ -+.||++.|+.|-+.+...++.
T Consensus 127 ~v~~~V~~F~k~~ki~lEi~dte~A~aTfNfLNaEgR~VaaAL~Pp~v~s~~e~~~~~a~lk~ 189 (196)
T KOG3363|consen 127 KVRPSVRQFVKSHKIKLEIVDTENAAATFNFLNAEGRYVAAALLPPGVTSDKEYGRALALLKG 189 (196)
T ss_pred hcCHHHHHHHHHhCcceEEecchhhhhHhhhccccccEEEEEecCCcccccchhhHHHHHhhc
Confidence 34556777777777644321 0122322 3889999999999998887764
No 304
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=54.82 E-value=45 Score=20.01 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
....++...+.+.|++...-|..+......||=.||=-|+-+.++
T Consensus 40 ~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~~~itl~dI~~aiE 84 (141)
T PRK11014 40 NHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASTIRIGDVVRELE 84 (141)
T ss_pred HHHHHHHHHHHhCCEEEEecCCCCCeeecCCHHHCCHHHHHHHHc
Confidence 345677788888888877666555555555665555555555444
No 305
>PRK05942 aspartate aminotransferase; Provisional
Probab=54.18 E-value=72 Score=22.18 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=28.5
Q ss_pred HHHHH-HHHcCceeeecCC----CCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 33 DVMDK-MKQMGVLIGKGGF----YGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 33 ~v~~~-~~~~Gll~~~~g~----~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
++... +.++|+.+.++.. ..+.+|++.+ -+.+.+.++++.+.+
T Consensus 341 ~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~ 388 (394)
T PRK05942 341 DFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDRLKQ 388 (394)
T ss_pred HHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 44444 4578999877421 2478999875 456777777777654
No 306
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.74 E-value=28 Score=17.34 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....++.+.+.+.|+-+........-..++ +++.+++.++..+.+.+.+.
T Consensus 16 ~~~~~i~~~L~~~~I~v~~i~q~~s~~~is--f~i~~~~~~~~~~~Lh~~~~ 65 (66)
T cd04924 16 GVAGRVFGALGKAGINVIMISQGSSEYNIS--FVVAEDDGWAAVKAVHDEFG 65 (66)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCccceEE--EEEeHHHHHHHHHHHHHHhc
Confidence 356678888889887553221101113333 78899999999999988764
No 307
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=53.36 E-value=46 Score=24.74 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCceeeecC---CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGG---FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g---~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+..|.+++++.|+-.-... .-..++.+-|-=+-|++|+|.+++++.+...
T Consensus 393 ~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~ 446 (496)
T COG1003 393 RALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIRE 446 (496)
T ss_pred cHHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999997432110 1357899999999999999999999877643
No 308
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=53.05 E-value=35 Score=23.77 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=27.9
Q ss_pred HHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 34 VMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 34 v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
+.+.+.++||.+.+. + ||.-. .++++++++++++|.+++
T Consensus 358 ~~~l~~~~~V~~~p~----~--ri~~~-~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 358 VDRLREEFGVYAVGS----G--RINVA-GLNESNIDYVAEAIAAVL 396 (396)
T ss_pred HHHHHHcCCEEEcCC----C--eEEEe-eCCHHHHHHHHHHHHhhC
Confidence 444556789988663 2 55432 389999999999998764
No 309
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=51.64 E-value=75 Score=22.38 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
....++.+.+.++|+.+...+... ....+++.+++.++++..|.+.+..
T Consensus 352 g~~a~i~~~L~~~gIni~~i~~s~----~~is~vv~~~d~~~av~~Lh~~f~~ 400 (401)
T TIGR00656 352 GVASEIFSALEEKNINILMIGSSE----TNISFLVDEKDAEKAVRKLHEVFEE 400 (401)
T ss_pred cHHHHHHHHHHHCCCcEEEEEcCC----CEEEEEEeHHHHHHHHHHHHHHHcc
Confidence 367788999999998766443222 2233789999999999999988754
No 310
>PHA02819 hypothetical protein; Provisional
Probab=51.56 E-value=25 Score=19.24 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=18.0
Q ss_pred cccCHHHHHHHHHHHHHhHhc
Q 042283 61 LCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l~~ 81 (82)
+.-+++|.++.++.++.+|..
T Consensus 13 msS~DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 13 MSSSDDDFNNFINVVKSVLNN 33 (71)
T ss_pred hCCchhHHHHHHHHHHHHHcC
Confidence 456899999999999999864
No 311
>PRK05968 hypothetical protein; Provisional
Probab=51.41 E-value=59 Score=22.87 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=17.9
Q ss_pred cccceEEEEEeeeCCCCchHHHHHHHHHHHHcC
Q 042283 10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMG 42 (82)
Q Consensus 10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~G 42 (82)
+|.|-|+.|++... ..+.++++.+...+
T Consensus 299 ~g~g~~~sf~~~~~-----~~~~~f~~~L~~~~ 326 (389)
T PRK05968 299 SGTSGLFSFIFREG-----IDVRAFADALKLFR 326 (389)
T ss_pred CCCceEEEEEECCH-----HHHHHHHHhCCccE
Confidence 37788999998631 23456666665444
No 312
>PLN02672 methionine S-methyltransferase
Probab=50.80 E-value=86 Score=25.76 Aligned_cols=48 Identities=6% Similarity=0.152 Sum_probs=36.1
Q ss_pred HHHHHHHHHHc-CceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQM-GVLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~-Gll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.+.++++ ||.+.++.. ..+.+|+.= ..+++++++++++|.+.++
T Consensus 1029 s~efae~LLee~GVaV~PGs~FG~~g~~RIsf--a~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1029 SSNIREAILKSTGLCINSSSWTGIPGYCRFSF--ALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred HHHHHHHHHHcCCEEEecCcccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence 45678888765 999987532 246788874 4589999999999998654
No 313
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=50.33 E-value=59 Score=20.10 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=35.3
Q ss_pred ceEEEEEeeeCCCCc----hHHHHHHHHHHHHcCc---eeeecCCCCCEEEEecC---------cccCHHHHHH
Q 042283 13 GFMLGVEFVTDSQLR----KAETLDVMDKMKQMGV---LIGKGGFYGNVFRIAPP---------LCFTKEDANY 70 (82)
Q Consensus 13 Glm~gie~~~~~~~~----~~~~~~v~~~~~~~Gl---l~~~~g~~~~~i~~~PP---------L~i~~~eid~ 70 (82)
|..++||+.....++ .+....++..+..-|- +.... .+.--+|.|| +.|+.+....
T Consensus 46 ~~~l~iE~K~~~~~kiYl~~e~ve~L~~FA~~fGg~p~iavKf--~~~~wrf~~p~L~~t~~~~y~Id~~~~~~ 117 (137)
T COG1591 46 GVYLAIEVKSRRETKIYLDKEQVEKLVEFARRFGGEPYIAVKF--PGVGWRFFPPDLEETREGNYVIDREALED 117 (137)
T ss_pred CEEEEEEEEeccCCcEEEcHHHHHHHHHHHHHcCCceEEEEEe--CCCceEEeCccccccccCcEEEChhhccc
Confidence 678999998766554 4556667776665442 22221 2446788888 7888873333
No 314
>PF08895 DUF1840: Domain of unknown function (DUF1840); InterPro: IPR014991 This group of proteins are functionally uncharacterised.
Probab=50.32 E-value=21 Score=20.94 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.9
Q ss_pred EecCcccCHHHHHHHHHHHHHhHh
Q 042283 57 IAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
..+|=+|+.+|+...+..|+.++.
T Consensus 31 ~~~~G~I~~edlp~Ai~~Le~Ai~ 54 (105)
T PF08895_consen 31 GTVPGAITAEDLPAAIARLEAAIA 54 (105)
T ss_pred CCCCceecHHHHHHHHHHHHHHHH
Confidence 456778999999999999999984
No 315
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=50.06 E-value=81 Score=21.58 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=37.4
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHH-HHcCceeeecCCC----CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKM-KQMGVLIGKGGFY----GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~-~~~Gll~~~~g~~----~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+-|.++-+++.. ...++...+ .++|+++.++... .+.+|+. .-+.++.+++.+.+++.++
T Consensus 294 ~~~~fl~~~~~~-------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~---~~~~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 294 SAANFLLVQSQG-------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVA---VRTEAENQRLLEALAAILA 358 (360)
T ss_pred CCCCEEEEEcCC-------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHhh
Confidence 446666565532 234566665 4689999886422 3678887 3345566777777777654
No 316
>TIGR03741 PRTRC_E PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.
Probab=49.56 E-value=13 Score=21.90 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=13.8
Q ss_pred EEecCccc--CHHHHHHHHH
Q 042283 56 RIAPPLCF--TKEDANYLVD 73 (82)
Q Consensus 56 ~~~PPL~i--~~~eid~~~~ 73 (82)
-+.|||++ |.+|+|+.+-
T Consensus 42 ~l~~Pl~L~gTp~ELD~gF~ 61 (104)
T TIGR03741 42 ALTKPLVLTGTPAELDAGFA 61 (104)
T ss_pred cccCCeeeccCHHHHHHHHH
Confidence 46778766 7899998765
No 317
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=49.50 E-value=34 Score=17.05 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCceeeec--CCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 29 AETLDVMDKMKQMGVLIGKG--GFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~--g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....++.+.+.++|+-+... +.....+ .+++++++.++.+.+|.+.+-
T Consensus 16 ~~~~~i~~~l~~~~I~v~~i~~~~s~~~i----s~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 16 GVAATFFSALAKANVNIRAIAQGSSERNI----SAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCcccEE----EEEEeHHHHHHHHHHHHHHHh
Confidence 46778899999999765322 1122222 267888999999999888763
No 318
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=49.45 E-value=28 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=22.4
Q ss_pred CEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 53 NVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 53 ~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
.-++++-|++-+-+|+.++.+.++++.
T Consensus 136 g~l~Im~PmV~~~~E~~~~~~~l~~~~ 162 (293)
T PF02896_consen 136 GNLRIMFPMVSTVEEVREAKEILEEVK 162 (293)
T ss_dssp SEEEEEESS--SHHHHHHHHHHHHHHH
T ss_pred cCCEEEecCCCcHHHHHHHHHHHHHHH
Confidence 369999999999999999999999883
No 319
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown.
Probab=49.34 E-value=33 Score=22.59 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=26.0
Q ss_pred CCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 52 GNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 52 ~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
.=+|-++.|+.+...++|.+++.+++.|
T Consensus 89 ~lHISLSr~~~lr~~~id~f~~~lr~~l 116 (239)
T PF09749_consen 89 PLHISLSRTFPLRTHQIDPFVDSLRQAL 116 (239)
T ss_pred CeEEEeCCCccccHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999998
No 320
>PF08877 MepB: MepB protein; InterPro: IPR011235 This is a family of uncharacterised bacterial proteins.
Probab=49.09 E-value=26 Score=21.25 Aligned_cols=29 Identities=28% Similarity=0.570 Sum_probs=21.9
Q ss_pred HHHHHcCceeeecCCCCCEEEEecCcccC
Q 042283 36 DKMKQMGVLIGKGGFYGNVFRIAPPLCFT 64 (82)
Q Consensus 36 ~~~~~~Gll~~~~g~~~~~i~~~PPL~i~ 64 (82)
+.+.++|++..........+|+.||-+.+
T Consensus 76 ~~L~~kgIls~~~~~GKrafRVYP~W~~~ 104 (123)
T PF08877_consen 76 EVLIEKGILSSEGKKGKRAFRVYPPWCTP 104 (123)
T ss_pred HHHHHCCccccCCCCCccEEEECCCccCc
Confidence 45778999887653356789999998765
No 321
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=48.68 E-value=24 Score=24.27 Aligned_cols=28 Identities=29% Similarity=0.486 Sum_probs=23.0
Q ss_pred CEEEEecCcccC---HHHHHHHHHHHHHhHh
Q 042283 53 NVFRIAPPLCFT---KEDANYLVDVMDCSMT 80 (82)
Q Consensus 53 ~~i~~~PPL~i~---~~eid~~~~~l~~~l~ 80 (82)
-+|++.||.-.+ .+++|.+.+..++++.
T Consensus 222 v~V~vL~pI~TeglT~ddv~~L~~~~R~~M~ 252 (276)
T KOG2848|consen 222 VIVRVLPPIPTEGLTKDDVDVLSDECRSAML 252 (276)
T ss_pred EEEEEcCCCCccCCCcccHHHHHHHHHHHHH
Confidence 368899998766 9999999998887764
No 322
>PLN02452 phosphoserine transaminase
Probab=48.25 E-value=79 Score=22.30 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
.-.++.+.+.++|++..+.-.....+|++===-++.++++.+++.+++--
T Consensus 312 ~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~ 361 (365)
T PLN02452 312 LEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 361 (365)
T ss_pred hHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHH
Confidence 56789999999999987653222238877666678999999999888754
No 323
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=47.78 E-value=27 Score=17.84 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=14.8
Q ss_pred EecCcc--cCHHHHHHHHHH
Q 042283 57 IAPPLC--FTKEDANYLVDV 74 (82)
Q Consensus 57 ~~PPL~--i~~~eid~~~~~ 74 (82)
-+||.- +|++|++.+++-
T Consensus 47 ~Mp~~~~~ls~~e~~~l~~y 66 (67)
T PF13442_consen 47 GMPPFGGQLSDEEIEALAAY 66 (67)
T ss_dssp TBSCTTTTSTHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHH
Confidence 588886 999999988763
No 324
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.60 E-value=37 Score=16.92 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....++...+.+.|+-+...........++ +++.+++.++.+..+.+.+-
T Consensus 16 ~~~~~i~~~L~~~~i~v~~i~~~~s~~~is--f~v~~~d~~~~~~~lh~~~~ 65 (66)
T cd04916 16 GVSARATAALAKAGINIRMINQGSSEISIM--IGVHNEDADKAVKAIYEEFF 65 (66)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCcccEEE--EEEeHHHHHHHHHHHHHHHh
Confidence 356678888888887653321111123333 77888999999999888763
No 325
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=46.81 E-value=40 Score=17.16 Aligned_cols=48 Identities=8% Similarity=0.125 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....++.+.+.++|+-+.........+- +++.+++.++++.++.+.+.
T Consensus 16 gi~~~if~aL~~~~I~v~~~~~Se~~is----~~v~~~~~~~av~~Lh~~f~ 63 (64)
T cd04937 16 GVMAKIVGALSKEGIEILQTADSHTTIS----CLVSEDDVKEAVNALHEAFE 63 (64)
T ss_pred CHHHHHHHHHHHCCCCEEEEEcCccEEE----EEEcHHHHHHHHHHHHHHhc
Confidence 3677888999999987754432333343 67899999999999988764
No 326
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=45.43 E-value=45 Score=17.31 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCceeeec--------CCCCCEEEEecCcccCH-HHHHHHHHHHHH
Q 042283 31 TLDVMDKMKQMGVLIGKG--------GFYGNVFRIAPPLCFTK-EDANYLVDVMDC 77 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~--------g~~~~~i~~~PPL~i~~-~eid~~~~~l~~ 77 (82)
...+.+.+.++|+-+... ......+.+.|.+.+++ ++++++.+-+++
T Consensus 7 ~~a~~~~L~~~g~~v~~~~~~~~~l~~~~~tll~i~~~~~~~~~~~~~~l~~~v~~ 62 (70)
T PF14258_consen 7 TYALYQLLEEQGVKVERWRKPYEALEADDGTLLVIGPDLRLSEPEEAEALLEWVEA 62 (70)
T ss_pred HHHHHHHHHHCCCeeEEecccHHHhCCCCCEEEEEeCCCCCCchHHHHHHHHHHHc
Confidence 445566677778766521 13456677888889996 999888776653
No 327
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.72 E-value=45 Score=17.10 Aligned_cols=46 Identities=15% Similarity=0.077 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCceeee--cCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 30 ETLDVMDKMKQMGVLIGK--GGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~--~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
...++...+.++|+-+.. .+.....+. +++.+++.+.++..|.+.+
T Consensus 16 ~~~~i~~aL~~~~I~v~~i~~g~s~~sis----~~v~~~~~~~av~~Lh~~f 63 (65)
T cd04918 16 ILERAFHVLYTKGVNVQMISQGASKVNIS----LIVNDSEAEGCVQALHKSF 63 (65)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCccceEE----EEEeHHHHHHHHHHHHHHH
Confidence 567888888899876532 222333443 5788999999999988776
No 328
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=44.07 E-value=22 Score=18.34 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.4
Q ss_pred EecCcccCHHHHHHHHHHHH
Q 042283 57 IAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~~~l~ 76 (82)
=.|+|++|.++...++..++
T Consensus 36 ~~~~L~~t~~eW~aFl~~vk 55 (56)
T PF04149_consen 36 DGPVLTFTPAEWAAFLAGVK 55 (56)
T ss_pred CCCEEEeCHHHHHHHHHHhh
Confidence 35788999999999988764
No 329
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=44.00 E-value=88 Score=23.38 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=33.7
Q ss_pred HHHHHH-HHcCceeeecCCC---CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 33 DVMDKM-KQMGVLIGKGGFY---GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 33 ~v~~~~-~~~Gll~~~~g~~---~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+++..+ .+.||.+.|+... .+.+|++= -+.+++++.++.++|.+.++
T Consensus 465 ~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisl-a~l~~~~~~~~~~rl~~~~~ 515 (521)
T TIGR03801 465 DVLFRLAEETGIVLLPGGGFGGPEWSVRVSL-ANLNEYDYAEIGRAIRKILD 515 (521)
T ss_pred HHHHHHHHhCCEEEeCchhcCCCCCeEEEEe-cCCCHHHHHHHHHHHHHHHH
Confidence 455444 4679998886422 34688874 23789999999999998875
No 330
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.62 E-value=41 Score=16.39 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
....++.+.+.++|+-+.........+. +++.+++.++...++.+.|
T Consensus 15 ~~~~~i~~~L~~~~i~v~~i~~s~~~is----~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 15 GVAAKMFKALAEAGINIEMISTSEIKIS----CLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred cHHHHHHHHHHHCCCCEEEEEccCCeEE----EEEeHHHHHHHHHHHHHHh
Confidence 3566788888898876554332232332 6788899999999988876
No 331
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=43.47 E-value=75 Score=22.57 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=10.8
Q ss_pred cccceEEEEEeee
Q 042283 10 RGWGFMLGVEFVT 22 (82)
Q Consensus 10 Rg~Glm~gie~~~ 22 (82)
+|-|-|+.|++..
T Consensus 312 ~g~g~~~s~~l~~ 324 (403)
T PRK07810 312 SGGGTVVTFELDA 324 (403)
T ss_pred CCCceEEEEEEcC
Confidence 3889999999963
No 332
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.40 E-value=1e+02 Score=22.74 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCceeeecC--------CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGG--------FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g--------~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....++..|+.+|+++-... .....||++----+|++|++++.+.++++..
T Consensus 406 lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~ 464 (467)
T KOG1358|consen 406 LLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVAS 464 (467)
T ss_pred HHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 45678888888788764321 1345678887788999999999999988753
No 333
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=43.33 E-value=41 Score=16.21 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....+.+.+.++++-+.......+...+. +++++++.+..+..+.+.+.
T Consensus 16 ~~~~i~~~l~~~~i~v~~i~~~~~~~~i~--~~v~~~~~~~~~~~l~~~~~ 64 (65)
T cd04892 16 VAARIFSALAEAGINIIMISQGSSEVNIS--FVVDEDDADKAVKALHEEFF 64 (65)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCceeEE--EEEeHHHHHHHHHHHHHHHh
Confidence 56678888888887554432211223333 78888999999999888763
No 334
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=43.30 E-value=61 Score=19.93 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 28 KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 28 ~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
+.+..++...+.+.|++-..-|..|...--.||=-||--|+-+.++
T Consensus 39 ~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar~~~~Isl~dVv~ave 84 (150)
T COG1959 39 PSYLEKILSKLRKAGLVKSVRGKGGGYRLARPPEEITLGDVVRALE 84 (150)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCCccCCCChHHCcHHHHHHHhc
Confidence 3456678888888888877666666666666776666555544443
No 335
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.88 E-value=48 Score=16.95 Aligned_cols=46 Identities=7% Similarity=0.045 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
...++.+.+.+.++.....+.....+. +++.+++.++++.+|-+.+
T Consensus 16 v~~~~~~~L~~~~i~~i~~~~s~~~is----~vv~~~d~~~av~~LH~~f 61 (63)
T cd04920 16 KLGPALEVFGKKPVHLVSQAANDLNLT----FVVDEDQADGLCARLHFQL 61 (63)
T ss_pred HHHHHHHHHhcCCceEEEEeCCCCeEE----EEEeHHHHHHHHHHHHHHH
Confidence 566777777778887766554444443 5788999999999988765
No 336
>TIGR01592 holin_SPP1 holin, SPP1 family. This model represents one of more than 30 families of phage proteins, all lacking detectable homology with each other, known or believed to act as holins. Holins act in cell lysis by bacteriophage. Members of this family are found in phage PBSX and phage SPP1, among others.
Probab=42.87 E-value=32 Score=19.05 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.5
Q ss_pred ecCcccCHHHHHHHHHHH
Q 042283 58 APPLCFTKEDANYLVDVM 75 (82)
Q Consensus 58 ~PPL~i~~~eid~~~~~l 75 (82)
.+|+-++++++..+++.+
T Consensus 26 ~~pipide~~i~~~v~~v 43 (75)
T TIGR01592 26 ISPIPVDEEGISTVVDAV 43 (75)
T ss_pred CCCCCccHHHHHHHHHHH
Confidence 578999999999998765
No 337
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=42.80 E-value=76 Score=19.22 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=27.4
Q ss_pred HHHHHHHHcCceeeecCCCCCEEEEecCccc--------CHHHHHHHHHHHHHhHhc
Q 042283 33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF--------TKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 33 ~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i--------~~~eid~~~~~l~~~l~~ 81 (82)
.+.+.|.+.| -+++.+.||.+= +++..+...+.+++.+++
T Consensus 40 l~L~~~k~~g---------~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 40 LLLDVCKELG---------IDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHTT----------EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC---------CceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4677888877 366789999875 999999999999887754
No 338
>PRK06767 methionine gamma-lyase; Provisional
Probab=42.63 E-value=38 Score=23.74 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=21.0
Q ss_pred cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceee
Q 042283 10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIG 46 (82)
Q Consensus 10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~ 46 (82)
+|.|-|+.|++..+ .+.+.++++.+...++-+.
T Consensus 297 ~~~gg~vsf~l~~~----~~~~~~f~~~l~~~~~~~s 329 (386)
T PRK06767 297 KRGGGVISFSIKGG----KEETQAFINDLHFITIAVS 329 (386)
T ss_pred CCCCceEEEEEcCC----HHHHHHHHHhCCccEEecC
Confidence 47789999998532 2345667777765554443
No 339
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=42.44 E-value=82 Score=20.01 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=31.4
Q ss_pred EEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEe-cCcccCHHHHHHHHHHH
Q 042283 15 MLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIA-PPLCFTKEDANYLVDVM 75 (82)
Q Consensus 15 m~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~-PPL~i~~~eid~~~~~l 75 (82)
++-|...+. .....+..+..+.++-+.|. ..+++|++. ||++- |--.+++..+
T Consensus 60 ~l~I~p~D~-----~~i~~I~kAI~~s~l~l~P~-~dg~~iri~iP~lT~--E~R~~lvK~~ 113 (179)
T cd00520 60 TIVINPFDK-----SAIKAIEKAILNSDLGLNPN-NDGAVIRVNLPPLTE--ERRKELVKDA 113 (179)
T ss_pred EEEEeecch-----hhHHHHHHHHHHCCCCCCcC-cCCCEEEecCCCCCH--HHHHHHHHHH
Confidence 455554432 25667777777877766664 357899876 67654 3333444433
No 340
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.23 E-value=32 Score=17.68 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=14.7
Q ss_pred ccCHHHHHHHHHHHHHh
Q 042283 62 CFTKEDANYLVDVMDCS 78 (82)
Q Consensus 62 ~i~~~eid~~~~~l~~~ 78 (82)
.++.++++.+++.+++.
T Consensus 8 g~~~~el~~~l~~~r~~ 24 (58)
T PF12646_consen 8 GFSGEELDKFLDALRKA 24 (58)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 46899999999999875
No 341
>PLN03217 transcription factor ATBS1; Provisional
Probab=41.85 E-value=31 Score=19.72 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=16.0
Q ss_pred ccCHHHHHHHHHHHHHhH
Q 042283 62 CFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 62 ~i~~~eid~~~~~l~~~l 79 (82)
-||++||.+++..|...|
T Consensus 16 risddqi~dLvsKLq~ll 33 (93)
T PLN03217 16 RISEDQINDLIIKLQQLL 33 (93)
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 789999999999988765
No 342
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=41.26 E-value=46 Score=16.22 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
....++...+.+.|+-+....... ..++ +++.+++.+..+.++.+.|
T Consensus 15 ~~~~~i~~~L~~~~i~v~~i~~s~--~~is--~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 15 GVAAKMFEALAEAGINIEMISTSE--IKIS--CLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred cHHHHHHHHHHHCCCcEEEEEccC--ceEE--EEEeHHHHHHHHHHHHHHh
Confidence 356678888889887554432222 2222 7888999999999988876
No 343
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=41.19 E-value=28 Score=27.38 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCce----eeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 31 TLDVMDKMKQMGVL----IGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 31 ~~~v~~~~~~~Gll----~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
+-.|.+++.+.|.= ..| -.+++.+-|-=-=+++|+|++.|++-.
T Consensus 867 avDvAKRL~DYgFHaPTmswP---V~gtLMIEPTESE~k~ElDRfcdAliS 914 (1001)
T KOG2040|consen 867 AVDVAKRLMDYGFHAPTMSWP---VAGTLMIEPTESEDKAELDRFCDALIS 914 (1001)
T ss_pred HHHHHHHHHhccCCCCccccc---cCCceEeccCccccHHHHHHHHHHHHH
Confidence 45677788887763 333 368999999999999999999998643
No 344
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=41.17 E-value=53 Score=16.93 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=34.7
Q ss_pred cce-EEEEEeeeCCCCchHHHHHHHHHHHHcC-ceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 12 WGF-MLGVEFVTDSQLRKAETLDVMDKMKQMG-VLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 12 ~Gl-m~gie~~~~~~~~~~~~~~v~~~~~~~G-ll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
.|+ |..+.+.... -..+....+.+.+.+.| -.++.+. ..+ |.|. .+++++++.+.+.|+++
T Consensus 7 ~g~~~v~~~~~~G~-i~~~~l~~la~ia~~yg~~~irlT~-~Q~-l~l~---~v~~~~~~~i~~~L~~~ 69 (69)
T PF03460_consen 7 DGFYMVRIRIPGGR-ISAEQLRALAEIAEKYGDGEIRLTT-RQN-LQLR---GVPEENLPAIFEELKEA 69 (69)
T ss_dssp TTEEEEEEB-GGGE-EEHHHHHHHHHHHHHHSTSEEEEET-TSC-EEEE---EEEGGGHHHHHHHHHHT
T ss_pred CeEEEEEEeCCCEE-ECHHHHHHHHHHHHHhCCCeEEECC-CCe-EEEe---CCCHHHHHHHHHHHHcC
Confidence 455 5555543211 11345666777777777 3444442 233 3332 67888899998888764
No 345
>PRK13697 cytochrome c6; Provisional
Probab=40.40 E-value=39 Score=19.13 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=17.8
Q ss_pred EecCc--ccCHHHHHHHHHHHHH
Q 042283 57 IAPPL--CFTKEDANYLVDVMDC 77 (82)
Q Consensus 57 ~~PPL--~i~~~eid~~~~~l~~ 77 (82)
.+||+ .+|++|++.++.-+.+
T Consensus 82 ~Mp~~~~~ls~~di~~l~~Yi~~ 104 (111)
T PRK13697 82 AMPAFKDRLSPDQIEDVAAYVLE 104 (111)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHH
Confidence 48888 6899999999987765
No 346
>TIGR01441 GPR GPR endopeptidase. This model describes a tetrameric protease that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs.
Probab=40.34 E-value=21 Score=25.48 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=18.1
Q ss_pred CcccCHHHHHHHHHHHHHhHh
Q 042283 60 PLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 60 PL~i~~~eid~~~~~l~~~l~ 80 (82)
.|.+|.+|+|++++.+.+.++
T Consensus 317 ~L~VTPKeID~~i~~~a~iIa 337 (358)
T TIGR01441 317 NLMVTPKEVDMFIEDMANVIA 337 (358)
T ss_pred cceECcHhHHHHHHHHHHHHH
Confidence 388999999999999888764
No 347
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=40.28 E-value=68 Score=17.88 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCceeeecC
Q 042283 31 TLDVMDKMKQMGVLIGKGG 49 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g 49 (82)
.-...++++++|++..|.|
T Consensus 36 ~i~a~~RLheKGLI~~pdG 54 (77)
T TIGR02647 36 AVAAAARLHEKGLTTQPDG 54 (77)
T ss_pred HHHHHHHHHHcCCccCCCC
Confidence 4456788999999999875
No 348
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=40.20 E-value=77 Score=18.61 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEE
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFR 56 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~ 56 (82)
..+..+.+.+.++|++...+..+...|+
T Consensus 74 SlAr~~Lr~L~~kG~Ik~V~k~~~~~IY 101 (105)
T PF03297_consen 74 SLARKALRELESKGLIKPVSKHHRQRIY 101 (105)
T ss_dssp HHHHHHHHHHHHCCSSEEEECCTTCEEE
T ss_pred HHHHHHHHHHHHCCCEEEEeccCCeEEE
Confidence 3677899999999999887765555554
No 349
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=39.78 E-value=52 Score=17.89 Aligned_cols=22 Identities=0% Similarity=0.016 Sum_probs=18.3
Q ss_pred CcccCHHHHHHHHHHHHHhHhc
Q 042283 60 PLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 60 PL~i~~~eid~~~~~l~~~l~~ 81 (82)
+-.+++++++++-..|.+++..
T Consensus 20 kp~Lde~~leei~~~l~~a~~~ 41 (92)
T PF08863_consen 20 KPELDEQQLEEINEKLSEAYQE 41 (92)
T ss_pred CCCCcHHHHHHHHHHHHHHhcC
Confidence 3458999999999999998754
No 350
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=39.37 E-value=44 Score=23.14 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCceeeecC---C--------------------CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 31 TLDVMDKMKQMGVLIGKGG---F--------------------YGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g---~--------------------~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
...+.+.+.++|+.++..- . ..++|.+--..-+|++|++.+++++.++|
T Consensus 309 r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 309 RKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred HHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 5577888888898765210 0 01345444445679999999999999875
No 351
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=39.01 E-value=57 Score=18.10 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=18.5
Q ss_pred EEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 54 VFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 54 ~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
++.+.-.-.+|.+++.++.+.+++.++
T Consensus 2 il~v~~~g~~t~ed~~~~~~~~~~~~~ 28 (109)
T PF11964_consen 2 ILAVRVSGKLTEEDYKELLPALEELIA 28 (109)
T ss_dssp -EEEEEEEEE-HHHHHHHHHHHHHHHT
T ss_pred EEEEEEeeeeCHHHHHHHHHHHHHHHh
Confidence 344444456789999999998888774
No 352
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=38.71 E-value=43 Score=15.23 Aligned_cols=17 Identities=6% Similarity=0.210 Sum_probs=13.6
Q ss_pred ccCHHHHHHHHHHHHHh
Q 042283 62 CFTKEDANYLVDVMDCS 78 (82)
Q Consensus 62 ~i~~~eid~~~~~l~~~ 78 (82)
-.+.+|+|..++.+.+.
T Consensus 17 GY~~~eVD~fLd~v~~~ 33 (34)
T TIGR03544 17 GYDAAEVDAFLDRVADD 33 (34)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 46789999999988764
No 353
>PRK07582 cystathionine gamma-lyase; Validated
Probab=38.34 E-value=1.4e+02 Score=20.85 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=10.2
Q ss_pred cccceEEEEEee
Q 042283 10 RGWGFMLGVEFV 21 (82)
Q Consensus 10 Rg~Glm~gie~~ 21 (82)
.|.|-|+.|++.
T Consensus 289 ~~~gg~~s~~~~ 300 (366)
T PRK07582 289 RRFGGLVSFELA 300 (366)
T ss_pred CCCcceEEEEeC
Confidence 478999999995
No 354
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=38.14 E-value=1.5e+02 Score=21.19 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=15.8
Q ss_pred eecccceEEEEEeeeCCCCchHHHHHHHHHH
Q 042283 8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKM 38 (82)
Q Consensus 8 ~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~ 38 (82)
+.+|-|-|++|++.... +.+.++.+.+
T Consensus 297 ~~~g~ggl~sf~l~~~~----~~~~~f~~~l 323 (386)
T PF01053_consen 297 QMSGGGGLLSFELKGGE----EAARRFLDAL 323 (386)
T ss_dssp HCSSCTSEEEEEESSHH----HHHHHHHHH-
T ss_pred cccccCceeEEEeccch----hhhHhHHhhh
Confidence 34477779999997531 2344455444
No 355
>PF13991 BssS: BssS protein family
Probab=38.12 E-value=45 Score=18.37 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=20.9
Q ss_pred EEecCcccCHHHHHHHHHHHHHhHh
Q 042283 56 RIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 56 ~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...+.|.+|.+....++++|++.++
T Consensus 35 ~~~~~~~lT~e~Ar~Li~~L~~~I~ 59 (73)
T PF13991_consen 35 QVGRTYWLTTEMARQLISILEAGID 59 (73)
T ss_pred ccCceeEecHHHHHHHHHHHHHHHH
Confidence 3567788999999999999998875
No 356
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=37.92 E-value=1.3e+02 Score=20.44 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
..+.+.|.++|-++...| ..|.+-++| .+|+.+++..++.+.+
T Consensus 164 ~~L~~~l~k~gal~fflG-GDN~ma~~p--~~s~g~v~d~i~~v~~ 206 (250)
T COG2429 164 ATLMRFLEKIGALLFFLG-GDNIMAVCP--GLSAGDVLDAIAEVLD 206 (250)
T ss_pred HHHHHHHHhcCcEEEEec-CcceEEECC--CCCchhHHHHHHHHHH
Confidence 456778889998887765 467777776 4566666666665544
No 357
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=37.56 E-value=55 Score=20.12 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=32.3
Q ss_pred HHHHHH-HcCceeeecC-CCCCEEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 34 VMDKMK-QMGVLIGKGG-FYGNVFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 34 v~~~~~-~~Gll~~~~g-~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
....++ ++|+-....- ...--|+=.||.-+++||+.+.+..+++++.-
T Consensus 80 Catk~l~~AGv~~D~~l~itdlGikK~~~~D~~~edv~kv~~~i~e~l~~ 129 (135)
T COG4273 80 CATKCLAEAGVQADVHLTITDLGIKKTYPSDCKDEDVEKVARTIKEALTI 129 (135)
T ss_pred HHHHHHHHhccceeEEEEehhcccccCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 334444 4676443211 12334777899999999999999999998863
No 358
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=37.55 E-value=80 Score=17.92 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCceeeecC
Q 042283 29 AETLDVMDKMKQMGVLIGKGG 49 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g 49 (82)
..+.++.+.+.++|++...+.
T Consensus 56 SlAr~~Lr~L~~kG~Ik~V~~ 76 (86)
T PRK09334 56 SVAKKVLRELEKRGVLVLYSK 76 (86)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 357788899999999987765
No 359
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=37.42 E-value=64 Score=19.09 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCceeee----cC--CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGK----GG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~----~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
-+..+.+.+.++|+..-. +| ..+|+-.+ +-++++++|+.++++++...
T Consensus 12 Da~~l~~~L~~~g~~~TkLsstGGFLr~GNtTll---iGvede~v~~vl~iIk~~c~ 65 (109)
T PF06153_consen 12 DADDLSDALNENGFRVTKLSSTGGFLREGNTTLL---IGVEDEKVDEVLEIIKENCK 65 (109)
T ss_dssp HHHHHHHHHHHTT--EEEEEEEETTTTEEEEEEE---EEEEGGGHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHCCceEEEEecccceeccCCEEEE---EEecHHHHHHHHHHHHHhhc
Confidence 577889999999985422 11 24555433 47899999999999998765
No 360
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=37.32 E-value=80 Score=18.35 Aligned_cols=18 Identities=6% Similarity=0.222 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCceeee
Q 042283 30 ETLDVMDKMKQMGVLIGK 47 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~ 47 (82)
...++.+.+.+.|++...
T Consensus 41 ~v~~il~~L~~~gli~~~ 58 (132)
T TIGR00738 41 YLEKILRTLRRAGLVESV 58 (132)
T ss_pred HHHHHHHHHHHCCcEEec
Confidence 445666667777776543
No 361
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=36.77 E-value=67 Score=16.86 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcC-ceeeecCC--CCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 31 TLDVMDKMKQMG-VLIGKGGF--YGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 31 ~~~v~~~~~~~G-ll~~~~g~--~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
...+.+.+.+.| +-...+|. .+.++-|+ -++++.+++.+.+.+..
T Consensus 36 i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~----~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 36 IDELKEAAEENGALGAKMSGSGGGPTVFALC----KDEDDAERVAEALREHY 83 (85)
T ss_dssp HHHHHHHHHHTTESEEEEETTSSSSEEEEEE----SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCceecCCCCCCCeEEEEE----CCHHHHHHHHHHHHHhC
Confidence 456788888999 44444543 34444333 47888899998887764
No 362
>PRK12362 germination protease; Provisional
Probab=36.44 E-value=26 Score=24.67 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=18.0
Q ss_pred CcccCHHHHHHHHHHHHHhHh
Q 042283 60 PLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 60 PL~i~~~eid~~~~~l~~~l~ 80 (82)
.|.+|.+|+|++++.+.+.++
T Consensus 285 ~l~VTPKeID~~i~~~s~iIa 305 (318)
T PRK12362 285 NLIVTPKEIDELIENLSKIIA 305 (318)
T ss_pred cceECcHhHHHHHHHHHHHHH
Confidence 488999999999999888764
No 363
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.34 E-value=55 Score=19.60 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.9
Q ss_pred ccCHHHHHHHHHHHHHhHh
Q 042283 62 CFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 62 ~i~~~eid~~~~~l~~~l~ 80 (82)
.+|.++++++++.+++...
T Consensus 95 ~~s~E~l~~Ildiv~Ky~~ 113 (114)
T COG1460 95 MLSDEELDKILDIVDKYRE 113 (114)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 4499999999999998653
No 364
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=35.94 E-value=71 Score=23.38 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
...++.+.+...|+..... ..+.+.+++-=+-|++|||.++++|
T Consensus 386 ~~~~l~~~~~~~gl~~~~~--~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 386 EVEELLKRGIEGGLNLRYP--DDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp HHHHHHHTT----EEEGGG---SSEEEEE--TT--HHHHHHHHH--
T ss_pred HHHHHHHHHHhcCCCcccc--CCCeEEEEccCCCCHHHHHHHHhcC
Confidence 3445777777788555443 3558999999999999999999875
No 365
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=35.92 E-value=31 Score=21.98 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=21.1
Q ss_pred CEEEEecCccc--CHHHHHHHHHHHHHhHhc
Q 042283 53 NVFRIAPPLCF--TKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 53 ~~i~~~PPL~i--~~~eid~~~~~l~~~l~~ 81 (82)
-.|++.||+-. +.++.+++.+.+++.+.+
T Consensus 166 v~v~~l~pi~~~~~~~~~~~l~~~v~~~i~~ 196 (211)
T cd07991 166 LEVEFLPVYTPSEEGEDPKEFANRVRLIMAN 196 (211)
T ss_pred EEEEECCCcccccCCCCHHHHHHHHHHHHHH
Confidence 35789999987 556777777777776643
No 366
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=35.86 E-value=1.1e+02 Score=18.90 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=24.3
Q ss_pred ceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 43 VLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 43 ll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
+.+...+...+.-.+.+...+|++|++.+-+..++
T Consensus 101 iNvG~~~~~~g~~~i~~~v~l~~ee~~~l~~l~~~ 135 (151)
T PF03830_consen 101 INVGNMSKKPGRKKITKNVYLSEEEIEALKELADK 135 (151)
T ss_dssp EEEEEB---TTSEEESSSBEE-HHHHHHHHHHHHT
T ss_pred EEECCCCCCCccceeCCeEEECHHHHHHHHHHHHC
Confidence 44555555677889999999999999988776654
No 367
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=35.84 E-value=7.3 Score=25.51 Aligned_cols=45 Identities=18% Similarity=0.081 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
..+..+.+.+...|.++..+......-+=-||+.++++|+.+++.
T Consensus 136 ~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~ 180 (218)
T PF05724_consen 136 RYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG 180 (218)
T ss_dssp HHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT
T ss_pred HHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc
Confidence 455566666666665322221111111227999999999998875
No 368
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=35.79 E-value=76 Score=17.18 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
....++.+.+.++++-+-.-..+-|+|-.. |..+.+.+++++..|++.+
T Consensus 16 g~d~~i~~~l~~~~v~ii~K~~nANtit~y--l~~~~k~~~r~~~~Le~~~ 64 (71)
T cd04910 16 GYDLEILELLQRFKVSIIAKDTNANTITHY--LAGSLKTIKRLTEDLENRF 64 (71)
T ss_pred hHHHHHHHHHHHcCCeEEEEecCCCeEEEE--EEcCHHHHHHHHHHHHHhC
Confidence 366789999999998654444567887766 6778889999999988765
No 369
>PLN02397 aspartate transaminase
Probab=35.69 E-value=1.1e+02 Score=21.73 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=29.6
Q ss_pred HHHHHHH-HcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 33 DVMDKMK-QMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 33 ~v~~~~~-~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+++.++ ++||.+.. ++ |++- -.++++.+++++++|.++++
T Consensus 379 ~~~~~Ll~~~~V~v~~----~~--Ri~~-~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 379 EQVDRMTKEYHIYMTR----DG--RISM-AGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred HHHHHHHHhCCEEECC----CC--eEEE-eeCCHHHHHHHHHHHHHHHh
Confidence 3555554 67998853 22 6653 13899999999999999985
No 370
>PRK12566 glycine dehydrogenase; Provisional
Probab=35.58 E-value=1.7e+02 Score=23.83 Aligned_cols=44 Identities=7% Similarity=0.091 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
+..+.+.+.++|+.++... .+++-++=-=+.|.+|++.++.++.
T Consensus 396 ~~~~~~~a~~~~~n~r~~~--~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 396 QAAIIESAEAARINLRILG--RGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred HHHHHHHHHHCCCeeEEeC--CCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 5678899999999999863 6788888888999999999999884
No 371
>PRK08210 aspartate kinase I; Reviewed
Probab=35.53 E-value=1.6e+02 Score=20.83 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....++.+.+-+.|+-+.........+ .+++.+++.++++.+|.+.+.
T Consensus 354 g~~~~i~~aL~~~~I~i~~~~~s~~~i----s~vv~~~~~~~a~~~Lh~~f~ 401 (403)
T PRK08210 354 GVMAKIVTALSEEGIEILQSADSHTTI----WVLVKEEDMEKAVNALHDAFE 401 (403)
T ss_pred cHHHHHHHHHHhCCCCEEEEecCCCEE----EEEEcHHHHHHHHHHHHHHhc
Confidence 467788888989998665443233333 367899999999999988773
No 372
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=35.35 E-value=66 Score=18.32 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=20.7
Q ss_pred CEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 53 NVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 53 ~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
..+.+.+||-.++.=++.+.+.+++++
T Consensus 91 ~~i~~~~pLG~~~~l~~~l~~r~~~~~ 117 (117)
T cd03414 91 IEFVLAPPLGPHPELAEALLERVREAL 117 (117)
T ss_pred ceEEECCCCCCCHHHHHHHHHHHHhhC
Confidence 467889999988877777777777653
No 373
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=35.27 E-value=1.4e+02 Score=20.02 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcc--cCHHHHHHHHHHHHHhHhc
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC--FTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~--i~~~eid~~~~~l~~~l~~ 81 (82)
.+..+.+.+-+.||-..+-.+.+.-+.+.-||. .+-+++..+...+.+.+.+
T Consensus 119 ~A~~vr~~L~~lgL~~f~KTSG~kGlHV~vPl~~~~~~~~~r~fa~~iA~~l~~ 172 (227)
T cd04861 119 AALLLRELLDELGLESFPKTSGGKGLHVYVPLAPRYTWDEVRAFAKALARELAR 172 (227)
T ss_pred HHHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344455666678885544333467788888887 5678888888888877653
No 374
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.16 E-value=40 Score=24.36 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=27.3
Q ss_pred CceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceee
Q 042283 4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIG 46 (82)
Q Consensus 4 ~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~ 46 (82)
|+..++.|.|+..-+....+ +-.+.+.|+++|++..
T Consensus 79 pll~~~~gqgf~vnLSvd~~-------s~Dlmr~crk~~vLYi 114 (481)
T COG5310 79 PLLKGVGGQGFCVNLSVDTS-------SLDLMRLCRKHGVLYI 114 (481)
T ss_pred HHhhcCCCceEEEEeEeccc-------hhHHHHHHHHcCeEEE
Confidence 46678899999877666432 3478999999999864
No 375
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=35.12 E-value=50 Score=19.03 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=14.0
Q ss_pred cCHHHHHHHHHHHHHh
Q 042283 63 FTKEDANYLVDVMDCS 78 (82)
Q Consensus 63 i~~~eid~~~~~l~~~ 78 (82)
+++++++++++.+.+.
T Consensus 101 ~~ee~l~~iL~~v~~~ 116 (117)
T PF03874_consen 101 FSEEDLEEILDLVSKY 116 (117)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6999999999998864
No 376
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=35.00 E-value=44 Score=15.52 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhHh
Q 042283 66 EDANYLVDVMDCSMT 80 (82)
Q Consensus 66 ~eid~~~~~l~~~l~ 80 (82)
+++|.+++-++.+|+
T Consensus 3 ~~~D~lLDeId~vLe 17 (33)
T TIGR03687 3 EGVDDLLDEIDGVLE 17 (33)
T ss_pred chHHHHHHHHHHHHH
Confidence 467777777777765
No 377
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=34.74 E-value=77 Score=19.84 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=23.2
Q ss_pred CCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 52 GNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 52 ~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
++.+.+.-|..+|+++++.++..=...+
T Consensus 10 dg~i~V~aP~~~s~~~I~~fl~~~~~WI 37 (205)
T PF01863_consen 10 DGEIVVSAPPRVSKEEIERFLRSKRDWI 37 (205)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4778999999999999999988755544
No 378
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=34.65 E-value=1.4e+02 Score=19.96 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcc--cCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC--FTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~--i~~~eid~~~~~l~~~l~~ 81 (82)
+..+.+.+-+.|+-..+-.+.+.-+.+.-||. .+-+++..+...+.+.+.+
T Consensus 120 A~~~r~~L~~lgL~~~~KTSG~kGlHV~vPl~~~~~~~~~r~fa~~lA~~l~~ 172 (227)
T cd04862 120 ALLVRELLDELGLESFVKTSGGKGLHVVVPLAPRAGWDEVKAFAKALAQHLAR 172 (227)
T ss_pred HHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44455566678885544333467788888887 6778888888888877653
No 379
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=34.65 E-value=98 Score=18.08 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCc-ccCHHHHHH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL-CFTKEDANY 70 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL-~i~~~eid~ 70 (82)
....++.+.+.+.|++....|..+ ..++.++. .++-.++-+
T Consensus 40 ~~v~~~l~~L~~~Gli~~~~g~~g-gy~l~~~~~~it~~~v~~ 81 (130)
T TIGR02944 40 PTVSKILKQLSLAGIVTSKRGVEG-GYTLARAPRDITVADIVK 81 (130)
T ss_pred HHHHHHHHHHHHCCcEEecCCCCC-ChhhcCCccccCHHHHHH
Confidence 456678888889998875433333 33344433 555444333
No 380
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.47 E-value=67 Score=16.16 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
...++.+.+.+.++.....+.....+. +++.+++.++++..|.+.+
T Consensus 17 v~~~i~~~L~~i~i~~i~~~~s~~~is----~~V~~~~~~~a~~~Lh~~f 62 (64)
T cd04917 17 VEKRIFDALEDINVRMICYGASNHNLC----FLVKEEDKDEVVQRLHSRL 62 (64)
T ss_pred HHHHHHHHHHhCCeEEEEEecCccEEE----EEEeHHHHHHHHHHHHHHH
Confidence 556777777677776655443444443 5688999999999988776
No 381
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=34.30 E-value=30 Score=25.25 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=20.1
Q ss_pred EEEecCcccCHHHHHHHHHHHHHhH
Q 042283 55 FRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 55 i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
+...-.+-++++|+|.+++.|++++
T Consensus 420 ~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 420 ITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred HHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 4445567789999999999999874
No 382
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=34.28 E-value=55 Score=17.16 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.7
Q ss_pred EecCcccCHHHHHHHHHHHH
Q 042283 57 IAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~~~l~ 76 (82)
+.-|..++.+++..+++.+-
T Consensus 20 ~~VP~~~t~~~Ls~LvN~LL 39 (65)
T PF08154_consen 20 ISVPSNITRKELSELVNQLL 39 (65)
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 55678999999999998764
No 383
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=34.19 E-value=60 Score=17.82 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=17.6
Q ss_pred ecCcccCHHHHHHHHHHHHHh
Q 042283 58 APPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 58 ~PPL~i~~~eid~~~~~l~~~ 78 (82)
.|..+++++|.+++-.+|++.
T Consensus 7 ~P~v~v~~~dfne~~kRLdei 27 (75)
T COG4064 7 VPKVVVDPDDFNEIHKRLDEI 27 (75)
T ss_pred CCccccCHHHHHHHHHHHHHH
Confidence 588889999999998888763
No 384
>PF08164 TRAUB: Apoptosis-antagonizing transcription factor, C-terminal; InterPro: IPR012617 This C-terminal domain is found in traube proteins [].; GO: 0005634 nucleus
Probab=34.18 E-value=40 Score=18.89 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=15.8
Q ss_pred EEEEecC---cccCHHHHHHHHHHH
Q 042283 54 VFRIAPP---LCFTKEDANYLVDVM 75 (82)
Q Consensus 54 ~i~~~PP---L~i~~~eid~~~~~l 75 (82)
.+-|++| ...+++++|+++..|
T Consensus 58 L~NFmaP~~~~~w~~~~~delf~sL 82 (83)
T PF08164_consen 58 LVNFMAPEDRPTWSDEQIDELFASL 82 (83)
T ss_pred HhhhcCCCCCCCCCHHHHHHHHHHc
Confidence 3346777 566799999998754
No 385
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=33.94 E-value=51 Score=21.39 Aligned_cols=44 Identities=9% Similarity=0.044 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
....+.+.+...|.++..+......-.--||..++.+|+.+.+.
T Consensus 134 ~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~ 177 (213)
T TIGR03840 134 YAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG 177 (213)
T ss_pred HHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc
Confidence 34556666777785443321111111125999999999988774
No 386
>PF10306 FLILHELTA: Hypothetical protein FLILHELTA; InterPro: IPR018811 This entry represents a family of conserved proteins found in fungi. They contain a characteristic FL(I)LHE(L)TA sequence motif, where the bracketed residues are I, L or V. Their function is not known.
Probab=33.91 E-value=59 Score=18.41 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.7
Q ss_pred EecCcccCHHHHHHHHHHHHHhHhcC
Q 042283 57 IAPPLCFTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~~~l~~~l~~~ 82 (82)
+.|+.-+++.-++++.+.++++++.|
T Consensus 52 ~~~~~~lp~~~~~~g~~~~~r~~~k~ 77 (86)
T PF10306_consen 52 WVPPYWLPDWALDEGTERFERWFRKK 77 (86)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHc
Confidence 56777888888999999999998764
No 387
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=33.76 E-value=45 Score=21.01 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.7
Q ss_pred EecCc-ccCHHHHHHHHHHHH
Q 042283 57 IAPPL-CFTKEDANYLVDVMD 76 (82)
Q Consensus 57 ~~PPL-~i~~~eid~~~~~l~ 76 (82)
++|++ .+|++|++.+..-|-
T Consensus 125 ~mP~~~~LsdeEL~avAaYIl 145 (159)
T TIGR03045 125 IFPKMRNLTDEDLRLIAGHIL 145 (159)
T ss_pred ccCCcCCCCHHHHHHHHHHHH
Confidence 68999 799999998887554
No 388
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=33.69 E-value=49 Score=18.33 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=13.6
Q ss_pred cccCHHHHHHHHHHHHH
Q 042283 61 LCFTKEDANYLVDVMDC 77 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~ 77 (82)
-++|++++.+++.++.+
T Consensus 11 hnvsd~qi~elFq~lT~ 27 (82)
T PF11212_consen 11 HNVSDEQINELFQALTQ 27 (82)
T ss_pred cCCCHHHHHHHHHHHhh
Confidence 36899999999988653
No 389
>PLN02788 phenylalanine-tRNA synthetase
Probab=33.58 E-value=41 Score=24.38 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.0
Q ss_pred cCcccCHHHHHHHHHHHHHhHhcC
Q 042283 59 PPLCFTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 59 PPL~i~~~eid~~~~~l~~~l~~~ 82 (82)
+==++|++|++++.+.+.+.|.+|
T Consensus 373 ~erTLTdeEIn~i~~kI~~~L~~k 396 (402)
T PLN02788 373 MERSLTDEEINALQDKVREEVQKK 396 (402)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 446889999999999999988643
No 390
>PRK06474 hypothetical protein; Provisional
Probab=33.57 E-value=44 Score=21.16 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.3
Q ss_pred ecCcccCHHHHHHHHHHHHHhHh
Q 042283 58 APPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 58 ~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.=+|.+|++|+.++.+.|.+.+.
T Consensus 131 ~~~L~Lt~ee~~el~~el~~ll~ 153 (178)
T PRK06474 131 VVELKLDEEEFEEFQSELNELMI 153 (178)
T ss_pred eeeEecCHHHHHHHHHHHHHHHH
Confidence 45788999999999998888765
No 391
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.07 E-value=51 Score=24.89 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=37.3
Q ss_pred EEEEEeeeCCCCch-HHHHHHHHHHHHcCceeeecCC-----CCCEEEEecCcccCHHHHHH
Q 042283 15 MLGVEFVTDSQLRK-AETLDVMDKMKQMGVLIGKGGF-----YGNVFRIAPPLCFTKEDANY 70 (82)
Q Consensus 15 m~gie~~~~~~~~~-~~~~~v~~~~~~~Gll~~~~g~-----~~~~i~~~PPL~i~~~eid~ 70 (82)
.-||++......+. ..-...+..++++||++-.|.- ...+++-.|-.++.+++++.
T Consensus 243 v~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp~MiLkeedfa~ 304 (574)
T COG3882 243 VDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHPDMILKEEDFAV 304 (574)
T ss_pred ccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCCCeEeeHhhhhh
Confidence 44666652221111 2234567789999999987752 23578999999999999874
No 392
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=33.06 E-value=47 Score=21.07 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.4
Q ss_pred EecCc-ccCHHHHHHHHHHHH
Q 042283 57 IAPPL-CFTKEDANYLVDVMD 76 (82)
Q Consensus 57 ~~PPL-~i~~~eid~~~~~l~ 76 (82)
++|++ .+|++||+.+..-+-
T Consensus 126 ~MPa~~~LsdeEL~aVAaYIl 146 (163)
T CHL00133 126 IFPKMRSLTDEDLYAIAGHIL 146 (163)
T ss_pred cCCCCCCCCHHHHHHHHHHHH
Confidence 58999 699999998877543
No 393
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=32.83 E-value=15 Score=26.51 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=0.0
Q ss_pred cccCHHHHHHHHHHHHHhH
Q 042283 61 LCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l 79 (82)
+.++++|||.+++.|...+
T Consensus 79 l~M~deELDdmM~sL~~if 97 (386)
T PF01698_consen 79 LNMTDEELDDMMNSLSQIF 97 (386)
T ss_dssp -------------------
T ss_pred hcccHHHHHHHHHHHHHHh
Confidence 7999999999999887654
No 394
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.70 E-value=14 Score=22.60 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=12.5
Q ss_pred EecCcccCHHHHHHHH
Q 042283 57 IAPPLCFTKEDANYLV 72 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~ 72 (82)
=+||++||++|-..++
T Consensus 45 DSPP~NiT~edpk~GL 60 (152)
T COG4050 45 DSPPMNITPEDPKRGL 60 (152)
T ss_pred CCCCCcCCcccccccc
Confidence 4899999999865543
No 395
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=32.57 E-value=1e+02 Score=21.73 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=21.1
Q ss_pred cCceeeec--CCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 41 MGVLIGKG--GFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 41 ~Gll~~~~--g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
-||+-+.+ +..--.+|+..|-.+|.+++..+.++.++
T Consensus 17 ~gv~~~~~~~~~~~~mvRv~ip~~lt~eqLr~LAdiaek 55 (341)
T TIGR02066 17 PGVIKHVAESGDVIYTVKAGTPRLLSVDTLRKLCDIADK 55 (341)
T ss_pred CcEEEEECCCCCcEEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 45565554 11223566664447777777777776554
No 396
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=32.46 E-value=1.5e+02 Score=22.54 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcc-cCHHHHHHHHHHHH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC-FTKEDANYLVDVMD 76 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~-i~~~eid~~~~~l~ 76 (82)
.+..+.+.+.++|++..-++...+ +.+.+|.+ =...+++.+++..+
T Consensus 357 pg~~v~~~L~e~gii~e~~~d~~~-lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 357 PGAIVAKYLREHGIIPEETGDYSN-LLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred cHHHHHHHHHHcCCeeeecCCcee-eEEeeeccchHHHHHHHHHHHHH
Confidence 567888999999999988875444 44555553 33344555555444
No 397
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=32.37 E-value=58 Score=19.14 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=15.1
Q ss_pred ccCHHHHHHHHHHHHHh
Q 042283 62 CFTKEDANYLVDVMDCS 78 (82)
Q Consensus 62 ~i~~~eid~~~~~l~~~ 78 (82)
.+++++++++++.+.+.
T Consensus 94 ~~~~e~l~~ILd~l~k~ 110 (112)
T PRK14981 94 TLSPEELDEILDIVKKY 110 (112)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999998875
No 398
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=32.30 E-value=79 Score=16.32 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 28 KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 28 ~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
.....++...+.++|+-+.... ....+. +.+.++++++++++|.+
T Consensus 21 ~Gv~a~i~~~La~~~I~i~~is-S~~~~~----ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 21 PGVAAKIFSALAEAGINIFMIS-SEISIS----ILVKEEDLEKAVEALHE 65 (65)
T ss_dssp HHHHHHHHHHHHHTTS-ECEEE-ESSEEE----EEEEGGGHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHCCCCEEEEE-EeeeEE----EEEeHHHHHHHHHHhcC
Confidence 4567889999999998554432 234444 35788999999988864
No 399
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=31.63 E-value=43 Score=21.97 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=17.2
Q ss_pred ccCHHHHHHHHHHHHHhHhcC
Q 042283 62 CFTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 62 ~i~~~eid~~~~~l~~~l~~~ 82 (82)
..|+.|+|+.++.++-.+.++
T Consensus 45 ~~sdse~Dd~vd~lE~~ve~~ 65 (214)
T PF06837_consen 45 PLSDSELDDKVDKLETDVEDK 65 (214)
T ss_pred cCcchhHHHHHHHHhhhHHhC
Confidence 468999999999998877653
No 400
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=31.59 E-value=1.4e+02 Score=18.97 Aligned_cols=63 Identities=6% Similarity=-0.003 Sum_probs=37.5
Q ss_pred eEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 14 FMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 14 lm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+|+||++..+- .+....+.+.....+ -........=+|.+..+--++++.++++.+++++.-.
T Consensus 3 lFiAl~~p~~i---~~~i~~~~~~~~~~~-~~k~v~~en~HiTL~flGev~e~~~~~l~~~l~~i~~ 65 (180)
T COG1514 3 LFIALDPPAEI---AERLARIRARLKGAR-AIKWVEPENLHITLKFLGEVDEDKADELIEALARIAA 65 (180)
T ss_pred eEEEecCCHHH---HHHHHHHHHhcCccc-ccccccccCceEEEEccCCcCchHHHHHHHHHHHhhc
Confidence 56777763210 112233333333333 2222222356899999999999999999998887543
No 401
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=31.31 E-value=57 Score=22.83 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCceeee---cC---------CC-C--CEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGK---GG---------FY-G--NVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~---~g---------~~-~--~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....+.+.+.++|+-... .+ .. . .+=.-.|...||++|++++++.+++.+.
T Consensus 63 tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~ 128 (310)
T COG1105 63 TGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLE 128 (310)
T ss_pred cHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcc
Confidence 345577777788864322 11 01 1 3445678899999999999999998654
No 402
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=31.28 E-value=77 Score=18.26 Aligned_cols=35 Identities=3% Similarity=0.006 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+.+|...+++.||-- +.|+++|++..++.+..=+.
T Consensus 26 aERigr~AlKaGL~e---------------ieI~d~eL~~~FeeIa~RFr 60 (92)
T PF07820_consen 26 AERIGRIALKAGLGE---------------IEISDAELQAAFEEIAARFR 60 (92)
T ss_pred HHHHHHHHHHccccc---------------ccCCHHHHHHHHHHHHHHHh
Confidence 446666777776532 57999999999988776553
No 403
>PRK02858 germination protease; Provisional
Probab=31.26 E-value=38 Score=24.30 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.9
Q ss_pred CcccCHHHHHHHHHHHHHhHh
Q 042283 60 PLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 60 PL~i~~~eid~~~~~l~~~l~ 80 (82)
.|.+|.+|+|++++.+...++
T Consensus 328 ~L~VTPKeID~~I~~~a~iIa 348 (369)
T PRK02858 328 NLMVTPKEVDAFIEDMANVIA 348 (369)
T ss_pred ceeECcHhHHHHHHHHHHHHH
Confidence 388899999999999888764
No 404
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=30.93 E-value=1.8e+02 Score=19.95 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHcCc-eeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 28 KAETLDVMDKMKQMGV-LIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 28 ~~~~~~v~~~~~~~Gl-l~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
.+....+.+.+.+.|- .++.+. ...|.|. .|+.++++++.+.|+.+
T Consensus 34 ~~qlr~la~ia~~yg~g~~~~Tt--rQ~i~l~---~i~~~~~~~v~~~L~~~ 80 (314)
T TIGR02912 34 AKYLSVLQNIAETYGNGKVHITT--RQGFEIP---GIRFEDIDEVNKALQPI 80 (314)
T ss_pred HHHHHHHHHHHHHhCCCeEEEec--ccceEec---CcCHHHHHHHHHHHHHH
Confidence 4455667777777652 333332 2224432 67889999999888765
No 405
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=30.88 E-value=60 Score=16.24 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=12.1
Q ss_pred cccCHHHHHHHHHHH
Q 042283 61 LCFTKEDANYLVDVM 75 (82)
Q Consensus 61 L~i~~~eid~~~~~l 75 (82)
++-+.+|+|+++..|
T Consensus 3 ~~~~~e~ld~L~~aL 17 (46)
T PF15614_consen 3 YYDDPEELDELLKAL 17 (46)
T ss_pred cccCHHHHHHHHHHH
Confidence 356789999999877
No 406
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=30.64 E-value=62 Score=21.05 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCc-eeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 31 TLDVMDKMKQMGV-LIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 31 ~~~v~~~~~~~Gl-l~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
...+.+.+...|. ++..-....+.. --||+-+|.+||.+.+.
T Consensus 138 ~~~l~~lL~pgG~~~l~~~~~~~~~~-~gPp~~~~~~el~~~~~ 180 (218)
T PRK13255 138 VQQLAALLPAGCRGLLVTLDYPQEEL-AGPPFSVSDEEVEALYA 180 (218)
T ss_pred HHHHHHHcCCCCeEEEEEEEeCCccC-CCCCCCCCHHHHHHHhc
Confidence 4455566666764 321111111111 34999999999998775
No 407
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=30.53 E-value=67 Score=14.91 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHhHh
Q 042283 64 TKEDANYLVDVMDCSMT 80 (82)
Q Consensus 64 ~~~eid~~~~~l~~~l~ 80 (82)
..+|+.+++..|++.+.
T Consensus 16 ~~~d~~~Gi~lLe~l~~ 32 (35)
T PF14852_consen 16 NREDQQEGIALLEELYR 32 (35)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 35788889988888764
No 408
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=30.42 E-value=92 Score=16.52 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=34.7
Q ss_pred EEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 15 MLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 15 m~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+.+.++.++ ....++.+.+.+.|..+. .+ +.+. .++..++..+...+.+.+.
T Consensus 5 lv~YDi~~~-----k~~~kv~k~L~~~g~~iQ-----~S-Vf~~---~~~~~~~~~l~~~l~~~i~ 56 (78)
T PF09827_consen 5 LVAYDISDN-----KRRNKVRKILKSYGTRIQ-----YS-VFEG---NLTNAELRKLRRELEKLID 56 (78)
T ss_dssp EEEEEEHSH-----HHHHHHHHHHHHTTEEEE-----TT-EEEE---EE-HHHHHHHHHHHHHHSC
T ss_pred EEEEECCCc-----HHHHHHHHHHHHhCcccc-----ce-EEEE---EcCHHHHHHHHHHHHhhCC
Confidence 345556332 356788899999993332 23 4444 7789999999999888765
No 409
>PF12005 DUF3499: Protein of unknown function (DUF3499); InterPro: IPR021888 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 125 to 163 amino acids in length.
Probab=30.40 E-value=90 Score=18.97 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=25.6
Q ss_pred eeeecCCCCCEEEEecCc---ccCHHHHHHHHHHHHHh
Q 042283 44 LIGKGGFYGNVFRIAPPL---CFTKEDANYLVDVMDCS 78 (82)
Q Consensus 44 l~~~~g~~~~~i~~~PPL---~i~~~eid~~~~~l~~~ 78 (82)
|.-+- ...+||+.+++ .-+++||..+.++++++
T Consensus 51 lTaP~--GWevvR~~~~~~~~~p~~DDL~ALAeAVREa 86 (123)
T PF12005_consen 51 LTAPR--GWEVVRLEGPFAPPPPDDDDLTALAEAVREA 86 (123)
T ss_pred ccCCC--CcEEEeccCCCCCCCCChhHHHHHHHHHHhh
Confidence 34444 38899999966 77889999999988875
No 410
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=30.39 E-value=41 Score=17.25 Aligned_cols=12 Identities=8% Similarity=0.255 Sum_probs=9.5
Q ss_pred cCHHHHHHHHHH
Q 042283 63 FTKEDANYLVDV 74 (82)
Q Consensus 63 i~~~eid~~~~~ 74 (82)
++++|+|.++..
T Consensus 15 vs~eELd~ilGg 26 (51)
T PF04604_consen 15 VSDEELDQILGG 26 (51)
T ss_pred cCHHHHHHHhCC
Confidence 688999988754
No 411
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=30.18 E-value=91 Score=16.37 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=27.5
Q ss_pred HHcCc-e-eeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 39 KQMGV-L-IGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 39 ~~~Gl-l-~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
++.|. + +|++|+ ...||+.-=-. +.++++++.+.+.+.+
T Consensus 32 ~~dG~~l~vR~SgT-EP~iRv~~Ea~-~~~~~~~~~~~i~~~i 72 (73)
T PF00408_consen 32 FEDGWRLLVRPSGT-EPKIRVYVEAP-DEEELEEIAEEIAEAI 72 (73)
T ss_dssp ETTEEEEEEEEESS-SSEEEEEEEES-SHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCC-CceEEEEEEeC-CHHHHHHHHHHHHHhh
Confidence 34454 3 688875 56777665444 8899999888887766
No 412
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=30.17 E-value=49 Score=17.14 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=14.5
Q ss_pred cCHHHHHHHHHHHHHhHhcC
Q 042283 63 FTKEDANYLVDVMDCSMTKK 82 (82)
Q Consensus 63 i~~~eid~~~~~l~~~l~~~ 82 (82)
|++.-+|..++.|+.-|++|
T Consensus 4 ~~~~~~d~yI~~Lk~kLd~K 23 (56)
T PF08112_consen 4 IDKSTIDKYISILKSKLDEK 23 (56)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 45667888888888777654
No 413
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.00 E-value=1.7e+02 Score=23.21 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=35.8
Q ss_pred eecccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 8 ~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
.+|-+|..+|+-|.. + |.+.+.+.|+--..+. .++.+.+. +.-++++++++++.|.+
T Consensus 2 ~i~v~G~VQGVGFRP-------F---VyrlA~~~~L~G~V~N-~g~gVeI~--v~~~~~~~e~Fi~~L~~ 58 (750)
T COG0068 2 KIRVRGIVQGVGFRP-------F---VYRLAQKLGLKGYVRN-DGDGVEIV--LEGDEENLEEFLNRLKK 58 (750)
T ss_pred eEEEEEEEeeccccH-------H---HHHHHHHcCCceEEec-CCCeEEEE--EecCcccHHHHHHHHhh
Confidence 367789999998864 3 4455556666443332 23444433 34567788999888765
No 414
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=29.83 E-value=51 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=19.3
Q ss_pred cCcccCHHHHHHHHHHHHHhHhc
Q 042283 59 PPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 59 PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+==++|++|++++.+.+.++|.+
T Consensus 432 ~eRTLTdeEVn~i~~kIi~~L~k 454 (460)
T TIGR00469 432 MDRNLTNAEVNEIHDMIASALVD 454 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 33688999999999999988864
No 415
>PF08804 gp32: gp32 DNA binding protein like; InterPro: IPR012339 This entry is represented by the Bacteriophage T4, Gp32, single-stranded DNA-binding protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Gp32 is essential for T4 DNA replication, recombination and repair, acting to stimulate replisome processing and accuracy through its binding to ssDNA as the replication fork advances. The crystal structure of Gp32 shows an ssDNA binding cleft comprised of regions from three structural subdomains, through which ssDNA can slide freely []. The structure of Gp32 is similar to other phage ssDNA-binding proteins such as Gp2.5 from bacteriophage T4, and gene V protein, both of which have a nucleic acid-binding OB-type fold. However, Gp32 contains a zinc-finger subdomain at residues 63-111 that is not found in the other two phage proteins.; GO: 0003697 single-stranded DNA binding; PDB: 1GPC_A 2A1K_B 2ATQ_B.
Probab=29.73 E-value=19 Score=20.87 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=5.5
Q ss_pred CCCEEEEecC
Q 042283 51 YGNVFRIAPP 60 (82)
Q Consensus 51 ~~~~i~~~PP 60 (82)
...+|||+|+
T Consensus 15 G~AvIRFLPa 24 (94)
T PF08804_consen 15 GSAVIRFLPA 24 (94)
T ss_dssp EEEEEEE---
T ss_pred ceEEEEecCC
Confidence 3579999997
No 416
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=29.53 E-value=77 Score=17.67 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=17.0
Q ss_pred ecCcccCHHHHHHHHHHHHHh
Q 042283 58 APPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 58 ~PPL~i~~~eid~~~~~l~~~ 78 (82)
.|..+.+.+|..++.++|++.
T Consensus 7 iP~viv~~~d~~~i~~rLD~i 27 (77)
T PRK01026 7 IPQVVVDPKDFKEIQKRLDEI 27 (77)
T ss_pred CCeeecCHHHHHHHHHHHHHH
Confidence 477788899999999988764
No 417
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=29.34 E-value=1.1e+02 Score=17.07 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
..+...++++| -.+.+--|+..|.+|++++++..++
T Consensus 76 ~~~~~~~l~~g----------~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 76 AEIAKKALEAG----------KHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp HHHHHHHHHTT----------SEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----------CEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 34555555555 3567889999999999999998765
No 418
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=29.26 E-value=1.4e+02 Score=18.09 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=25.3
Q ss_pred CCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 51 YGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 51 ~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+|.+.+.-.-....+|+|++-.++++++.
T Consensus 72 ~~n~V~Ilad~ae~~edid~~~~~l~~~~~ 101 (131)
T PRK06228 72 TGPDVLVSVRNAIGGTDLGELREAVEQEFL 101 (131)
T ss_pred ECCEEEEEEceeEchhhHHHHHHHHHHHHH
Confidence 367788888888999999999999998864
No 419
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=29.24 E-value=17 Score=24.55 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=13.1
Q ss_pred CCEEEEecCcccCHHH
Q 042283 52 GNVFRIAPPLCFTKED 67 (82)
Q Consensus 52 ~~~i~~~PPL~i~~~e 67 (82)
..-+.+.|||++.+++
T Consensus 215 ~~~l~~~ppLii~~e~ 230 (248)
T COG4123 215 KSGLKVLPPLIIHDED 230 (248)
T ss_pred CCCceecCCEEEECCC
Confidence 3458899999998776
No 420
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=29.18 E-value=61 Score=21.07 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=17.7
Q ss_pred EEEEecCcccCH--HHHHHHHHHHHHh
Q 042283 54 VFRIAPPLCFTK--EDANYLVDVMDCS 78 (82)
Q Consensus 54 ~i~~~PPL~i~~--~eid~~~~~l~~~ 78 (82)
+=.++|||..++ ++|+.++++|++.
T Consensus 78 ~ElvSP~l~~~~~~~~i~~~~~~lr~~ 104 (252)
T PF12224_consen 78 VELVSPPLPYDEELEEIDKVLEALRRN 104 (252)
T ss_pred EEEECCCcCchhhHHHHHHHHHHHHHc
Confidence 345889999875 6677777777654
No 421
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=29.15 E-value=1.8e+02 Score=19.51 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcc--cCHHHHHHHHHHHHHhHhc
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC--FTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~--i~~~eid~~~~~l~~~l~~ 81 (82)
+..+.+.+-+.|+-..+-.+.+.-+.+.-||. .+-+++..+...+.+.+.+
T Consensus 124 A~~~r~~L~~lgL~s~~KTSG~kGlHV~vPl~~~~~~~~vr~fa~~~A~~l~~ 176 (231)
T cd04863 124 ALWLRDRLAALGLASFPKTSGSKGLHLYVPLDGPVSSDQTKEFAKALARELER 176 (231)
T ss_pred HHHHHHHHHHcCCccceECCCCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44455566678885444323467788888876 5668888888888877653
No 422
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=29.08 E-value=1.9e+02 Score=19.63 Aligned_cols=51 Identities=8% Similarity=0.124 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcc--cCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC--FTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~--i~~~eid~~~~~l~~~l~ 80 (82)
.+..+.+.+-+.|+-..+-.+.+..+.+.-||. .+-+++..+...+.+.+.
T Consensus 135 ~A~~~r~~L~~lgL~~f~KTSG~kGlHV~vPl~~~~~~~~~r~fa~~iA~~l~ 187 (245)
T TIGR02778 135 AAQLIRELLDELGLESFVKTSGGKGLHVYVPLRPTLSWDEVKDFAKALAQALA 187 (245)
T ss_pred HHHHHHHHHHHcCCccceEccCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 344455566678885444323467788888876 566888888888877765
No 423
>COG2378 Predicted transcriptional regulator [Transcription]
Probab=28.73 E-value=69 Score=22.12 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=18.2
Q ss_pred EecCcccCHHHHHHHHHHHHHh
Q 042283 57 IAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~~~l~~~ 78 (82)
-.||+.+|++|+..++..+...
T Consensus 70 ~L~pl~ft~~E~~Al~~~l~~l 91 (311)
T COG2378 70 KLPPLMFTEEEAEALLLALRAL 91 (311)
T ss_pred CCCcccCCHHHHHHHHHHHHHH
Confidence 5699999999999888776543
No 424
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=28.64 E-value=1.1e+02 Score=22.10 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=26.3
Q ss_pred CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 52 GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 52 ~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
...|||+=-..-|++|+|.+++.+.+.++
T Consensus 348 ~~siR~S~g~~tt~eei~~~~~~l~~~i~ 376 (386)
T COG1104 348 HGSIRFSLGRFTTEEEIDAAAEALKEIIK 376 (386)
T ss_pred CccEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998875
No 425
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.60 E-value=68 Score=21.51 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=24.3
Q ss_pred CceeeecccceEEEEEeeeCCCCchHHHHHHHHHHHHc
Q 042283 4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQM 41 (82)
Q Consensus 4 ~~v~~vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~ 41 (82)
++|+||-|.|...|+||... ....+...|.++
T Consensus 92 SHVSDIv~~G~iYaVEfs~R------~~reLl~~a~~R 123 (231)
T COG1889 92 SHVSDIVGEGRIYAVEFSPR------PMRELLDVAEKR 123 (231)
T ss_pred hHHHhccCCCcEEEEEecch------hHHHHHHHHHhC
Confidence 36889999999999999753 455666666654
No 426
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=28.46 E-value=2.2e+02 Score=20.27 Aligned_cols=50 Identities=8% Similarity=-0.093 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHh
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
+...++.+.+.++|++...+-.....+|.+===-++.++++.+++-+.+-
T Consensus 310 ~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f 359 (364)
T PRK12462 310 RLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDF 359 (364)
T ss_pred HHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46778999999999987654333455887766677889999988877664
No 427
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=28.31 E-value=59 Score=18.45 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=10.2
Q ss_pred CCEEEEecCccc
Q 042283 52 GNVFRIAPPLCF 63 (82)
Q Consensus 52 ~~~i~~~PPL~i 63 (82)
.+++.++||+..
T Consensus 79 d~Vilvspp~~~ 90 (91)
T KOG3460|consen 79 DGVILVSPPLRL 90 (91)
T ss_pred CeEEEEcCcccC
Confidence 789999999864
No 428
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=28.18 E-value=64 Score=19.17 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=13.6
Q ss_pred eeecccceEEEEEeee
Q 042283 7 GDARGWGFMLGVEFVT 22 (82)
Q Consensus 7 ~~vRg~Glm~gie~~~ 22 (82)
.+|+|.|.|.-|++.+
T Consensus 45 ~~vkG~gT~~~vdCgd 60 (112)
T cd03067 45 QAVKGQGTIAWIDCGD 60 (112)
T ss_pred HHhcCceeEEEEecCC
Confidence 3689999999999964
No 429
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=28.09 E-value=94 Score=17.28 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=15.2
Q ss_pred cccCHHHHHHHHHHHHHhHh
Q 042283 61 LCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l~ 80 (82)
|-++++|++.+..-+.+.+.
T Consensus 15 L~l~eee~~~~~~~l~~il~ 34 (93)
T TIGR00135 15 LELSEEEAESFAGDLDKILG 34 (93)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 56789998888887776653
No 430
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.82 E-value=87 Score=17.10 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=16.1
Q ss_pred cCcccCHHHHHHHHHHHHHh
Q 042283 59 PPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 59 PPL~i~~~eid~~~~~l~~~ 78 (82)
|..+.+.+|..++.+.|++.
T Consensus 5 P~v~v~~~d~~~i~~rLd~i 24 (70)
T TIGR01149 5 PAVFVEPDEFNEVMKRLDEI 24 (70)
T ss_pred CeeecCHHHHHHHHHHHHHH
Confidence 66778889999999888764
No 431
>PLN02757 sirohydrochlorine ferrochelatase
Probab=27.80 E-value=1.3e+02 Score=18.56 Aligned_cols=28 Identities=7% Similarity=0.260 Sum_probs=22.4
Q ss_pred EEEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 54 VFRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 54 ~i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
.+.+.|||-.++.=++.+.+++++++..
T Consensus 107 ~i~~~~pLG~~p~l~~ll~~Ri~eal~~ 134 (154)
T PLN02757 107 KYLVTAPIGLHELMVDVVNDRIKYCLSH 134 (154)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHhhc
Confidence 5778888888888888888888887754
No 432
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=27.47 E-value=2.5e+02 Score=20.74 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=35.3
Q ss_pred HHHHHHHcCceeeecC--CCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 34 VMDKMKQMGVLIGKGG--FYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 34 v~~~~~~~Gll~~~~g--~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
..+...|+.|++.|+- ...|.+|+. +++..+.+++++++|++...
T Consensus 386 c~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~leea~~Rik~Fc~ 432 (447)
T KOG0259|consen 386 CQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEEAFSRIKEFCD 432 (447)
T ss_pred HHHHhhhcceEEeccccccCCCeEEEE--EccChHHHHHHHHHHHHHHH
Confidence 3455678899998853 367889987 88899999999999987654
No 433
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=27.47 E-value=89 Score=16.50 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=14.8
Q ss_pred ccCHHHHHHHHHHHHHhHhc
Q 042283 62 CFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 62 ~i~~~eid~~~~~l~~~l~~ 81 (82)
+++.+++.++.+.+.+.+.+
T Consensus 30 ~l~~~~l~~~~~~l~~~y~~ 49 (76)
T PF08479_consen 30 CLTLADLQQLADALTNYYRE 49 (76)
T ss_dssp BB-HHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHH
Confidence 56788888888888877654
No 434
>TIGR02117 chp_urease_rgn conserved hypothetical protein. This conserved hypothetical protein of unknown function is found in several Proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=27.32 E-value=58 Score=21.35 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.5
Q ss_pred cCcccCHHHHHHHHHHHHHhHh
Q 042283 59 PPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 59 PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.++.+|+++...+++.|+++++
T Consensus 124 ~~l~vs~~qy~~L~~~I~~sf~ 145 (208)
T TIGR02117 124 KRLLVSENQYNRLMDFISASFV 145 (208)
T ss_pred EEEEcCHHHHHHHHHHHHHhcC
Confidence 4579999999999999999875
No 435
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=27.26 E-value=67 Score=20.39 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.4
Q ss_pred CcccCHHHHHHHHHHHHHhHhc
Q 042283 60 PLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 60 PL~i~~~eid~~~~~l~~~l~~ 81 (82)
++.+|+++.+++++.|+++++.
T Consensus 95 ~i~ls~~~y~~L~~~I~~sf~~ 116 (173)
T PF09601_consen 95 PIRLSEAQYRRLVAFIRASFQR 116 (173)
T ss_pred EEEcCHHHHHHHHHHHHHHhcc
Confidence 4689999999999999998863
No 436
>PF10524 NfI_DNAbd_pre-N: Nuclear factor I protein pre-N-terminus; InterPro: IPR019548 Nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF) [, ] (also known as TGGCA-binding proteins) are a family of vertebrate nuclear proteins which recognise and bind, as dimers, the palindromic DNA sequence 5'-TGGCANNNTGCCA-3'. CTF/NF-I binding sites are present in viral and cellular promoters and in the origin of DNA replication of Human adenovirus 2 (HAdV-2). The CTF/NF-I proteins were first identified as nuclear factor I, a collection of proteins that activate the replication of several Adenovirus serotypes (together with NF-II and NF-III) []. The family of proteins was also identified as the CTF transcription factors, before the NFI and CTF families were found to be identical []. The CTF/NF-I proteins are individually capable of activating transcription and DNA replication. In a given species, there are a large number of different CTF/NF-I proteins, generated both by alternative splicing and by the occurrence of four different genes. CTF/NF-1 proteins contain 400 to 600 amino acids. The N-terminal 200 amino-acid sequence, almost perfectly conserved in all species and genes sequenced, mediates site-specific DNA recognition, protein dimerisation and Adenovirus DNA replication. The C-terminal 100 amino acids contain the transcriptional activation domain. This activation domain is the target of gene expression regulatory pathways elicited by growth factors and it interacts with basal transcription factors and with histone H3 []. This entry represents the N terminus, of which 200 residues contain the DNA-binding and dimerisation domain, but also has an 8-47 residue highly conserved region 5' of this, whose function is not known. Deletion of the N-terminal 200 amino acids removes the DNA-binding activity, dimerisation-ability and the stimulation of adenovirus DNA replication [].
Probab=26.98 E-value=69 Score=15.73 Aligned_cols=17 Identities=6% Similarity=0.340 Sum_probs=13.3
Q ss_pred cCcccCHHHHHHHHHHH
Q 042283 59 PPLCFTKEDANYLVDVM 75 (82)
Q Consensus 59 PPL~i~~~eid~~~~~l 75 (82)
|++..+.+|..-+++++
T Consensus 1 p~~~~~~de~hpFiEal 17 (44)
T PF10524_consen 1 PFISSQQDEFHPFIEAL 17 (44)
T ss_pred CCcCchHHHhhhHHHHH
Confidence 67788888888877765
No 437
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=26.89 E-value=2.7e+02 Score=20.71 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
+.+..+.++....|+.++... .+++-++--=+.|+++|+.+++++....
T Consensus 400 ~~~~~l~~~~~~~G~~L~~~~--~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 400 EVAEALLAAAIAGGINLRRVD--ADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred hHHHHHHHHHHhcCCceeeec--CCceEEEeecccCHHHHHHHHHHHhhhc
Confidence 356778888889999888753 5678788778889999999999987654
No 438
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=26.82 E-value=89 Score=19.05 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=14.8
Q ss_pred EecCcccCHHHHHHHHH
Q 042283 57 IAPPLCFTKEDANYLVD 73 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~~ 73 (82)
+.||+++|-.|+.+++.
T Consensus 80 ~F~PYTlT~~e~r~iF~ 96 (145)
T TIGR02542 80 IFPPYTLTYNELRQIFR 96 (145)
T ss_pred ecCceeeeHHHHHHHHh
Confidence 67999999999988765
No 439
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=26.79 E-value=1.3e+02 Score=21.27 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=10.9
Q ss_pred ecccceEEEEEee
Q 042283 9 ARGWGFMLGVEFV 21 (82)
Q Consensus 9 vRg~Glm~gie~~ 21 (82)
.+|.|-|++|++.
T Consensus 293 ~~g~g~~~s~~~~ 305 (386)
T PRK08045 293 QKGFGAMLSFELD 305 (386)
T ss_pred CCCCCceEEEEec
Confidence 3588999999995
No 440
>PRK09947 hypothetical protein; Provisional
Probab=26.78 E-value=75 Score=21.13 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 52 GNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 52 ~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
.-.+.-.||+.++.++|+.+++.+.+
T Consensus 145 ~~~~f~~~Py~~~~~~I~~~l~~m~~ 170 (215)
T PRK09947 145 KVAMLMQAPYYFQEAQIEAALAAMDV 170 (215)
T ss_pred cHHHhcCCCCCCCHHHHHHHHHHHhh
Confidence 34566889999999999999988764
No 441
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=26.69 E-value=95 Score=15.44 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=20.7
Q ss_pred CCEEEEecCcccCHHHHHHHHHHHH
Q 042283 52 GNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 52 ~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
...+.+.|.-.++++++++.+..-+
T Consensus 28 ~e~lvW~P~~~~~d~~l~~yl~~A~ 52 (55)
T PF01448_consen 28 EEELVWSPNNPLSDRKLEEYLKVAK 52 (55)
T ss_pred cceEeECCCCCCCHHHHHHHHHHHH
Confidence 5778889988999999999887544
No 442
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=26.61 E-value=1.4e+02 Score=21.71 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=27.5
Q ss_pred HHHHHHHHcCceeeecCC------------CCCEEEEe--------cCcccCHHHHHHHHHH
Q 042283 33 DVMDKMKQMGVLIGKGGF------------YGNVFRIA--------PPLCFTKEDANYLVDV 74 (82)
Q Consensus 33 ~v~~~~~~~Gll~~~~g~------------~~~~i~~~--------PPL~i~~~eid~~~~~ 74 (82)
.++..+++.|++-..... ....+.+. +++.+|++||+++.-+
T Consensus 245 d~iA~ll~~giid~~Gr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itq~DIr~~qlA 306 (412)
T PF14574_consen 245 DAIAELLRAGIIDESGRFNKPEERRIREREGEREFVLAWAEETDIGDDIYITQKDIREFQLA 306 (412)
T ss_dssp HHHHHHHHTTSB-TTS-B-TT-TTTEE--TTSSEEEEE-CCCSSSSS-EEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCCCCcCCCCccccccccCCCceEEEecccccCCCCCEEEeHHHHHHHHHH
Confidence 567788888888754311 12346665 9999999999987653
No 443
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=26.59 E-value=1.1e+02 Score=21.48 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=15.5
Q ss_pred CCCceeeec--ccceEEEEEee
Q 042283 2 KYGTIGDAR--GWGFMLGVEFV 21 (82)
Q Consensus 2 ~~~~v~~vR--g~Glm~gie~~ 21 (82)
+||.|..|. |.|-|++|++.
T Consensus 267 ~~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 267 KSPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred hCCCccEEeCCCcCcEEEEEEC
Confidence 577776655 78999999985
No 444
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.58 E-value=77 Score=19.35 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=15.5
Q ss_pred ecCcccCHHHHHHHHHHHH
Q 042283 58 APPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 58 ~PPL~i~~~eid~~~~~l~ 76 (82)
-||-..|+.|+..+++.+-
T Consensus 105 ep~Pl~sE~Ele~~iD~vL 123 (144)
T KOG4065|consen 105 EPVPLSSEAELERLIDAVL 123 (144)
T ss_pred CCCCCCCHHHHHHHHHHHh
Confidence 3778889999999988753
No 445
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=26.24 E-value=23 Score=21.68 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=9.2
Q ss_pred EEEecCcccCHH
Q 042283 55 FRIAPPLCFTKE 66 (82)
Q Consensus 55 i~~~PPL~i~~~ 66 (82)
-.+.||||+.++
T Consensus 115 CVLfPpLCf~d~ 126 (130)
T PF09551_consen 115 CVLFPPLCFVDA 126 (130)
T ss_pred EEecCCceeeec
Confidence 457899998764
No 446
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=26.15 E-value=1.4e+02 Score=20.91 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=20.7
Q ss_pred cccceEEEEEeeeCCCCchHHHHHHHHHHHHcCceeee
Q 042283 10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGK 47 (82)
Q Consensus 10 Rg~Glm~gie~~~~~~~~~~~~~~v~~~~~~~Gll~~~ 47 (82)
.|.|-|++|++ .+. +.+.++...+...++-++.
T Consensus 288 ~g~~~~~sf~~-~~~----~~~~~~~~~L~~~~i~~s~ 320 (378)
T TIGR01329 288 KGAGSVLSFET-GSV----ALSKRLVEATKLFSITVSF 320 (378)
T ss_pred CCcceEEEEEE-CCH----HHHHHHHHhCcCcccccCC
Confidence 57889999999 321 2355677766444444443
No 447
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=26.10 E-value=90 Score=20.70 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=18.7
Q ss_pred CEEEEecCcccCH---HHHHHHHHHHHHhHh
Q 042283 53 NVFRIAPPLCFTK---EDANYLVDVMDCSMT 80 (82)
Q Consensus 53 ~~i~~~PPL~i~~---~eid~~~~~l~~~l~ 80 (82)
-.+++.||+..++ ++.+++.+.+++.+.
T Consensus 196 i~v~~~~PI~~~~~~~~~~~~l~~~v~~~i~ 226 (245)
T PRK15018 196 VIVEMLPPIDVSQYGKDQVRELAAHCRSIME 226 (245)
T ss_pred EEEEEcCCCcCCCCChhhHHHHHHHHHHHHH
Confidence 3578999988753 556666666665543
No 448
>PF13113 DUF3970: Protein of unknown function (DUF3970)
Probab=26.04 E-value=75 Score=16.84 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=12.4
Q ss_pred cCHHHHHHHHHHHHH
Q 042283 63 FTKEDANYLVDVMDC 77 (82)
Q Consensus 63 i~~~eid~~~~~l~~ 77 (82)
=+++||.+++..+++
T Consensus 8 G~~eEi~~fi~~~~~ 22 (60)
T PF13113_consen 8 GTKEEIEEFIKSFEK 22 (60)
T ss_pred CCHHHHHHHHHhhhh
Confidence 478899999988876
No 449
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=25.97 E-value=1.2e+02 Score=18.76 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=19.6
Q ss_pred EEEEecCcccC----HHHHHHHHHHHHHhHh
Q 042283 54 VFRIAPPLCFT----KEDANYLVDVMDCSMT 80 (82)
Q Consensus 54 ~i~~~PPL~i~----~~eid~~~~~l~~~l~ 80 (82)
.+.|.||+..+ ++++++..+.+++.+.
T Consensus 158 ~v~~~~pi~~~~~~~~~~~~~~~~~~~~~~~ 188 (189)
T cd07983 158 VIVFGEPIHVPPDADEEELEEYRLELEAALN 188 (189)
T ss_pred EEEEeCCEeeCCCCCHHHHHHHHHHHHHHhh
Confidence 57788887653 4677888888887765
No 450
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=25.96 E-value=94 Score=16.21 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=12.2
Q ss_pred cCcccCHHHHHHHHHHHHH
Q 042283 59 PPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 59 PPL~i~~~eid~~~~~l~~ 77 (82)
|++.+|.+|+..+++.+.+
T Consensus 29 ~~~~~s~~eL~~fL~~lv~ 47 (60)
T PF08672_consen 29 GGYDISLEELQEFLDRLVE 47 (60)
T ss_dssp --TT--HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 5688999999999887643
No 451
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=25.87 E-value=2.6e+02 Score=20.27 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=25.7
Q ss_pred CCEEEEecCc-ccCHHHHHHHHHHHHHhHhc
Q 042283 52 GNVFRIAPPL-CFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 52 ~~~i~~~PPL-~i~~~eid~~~~~l~~~l~~ 81 (82)
.+.+|+.-|= +.|.+++|.+.+.+...++.
T Consensus 378 ~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 378 LELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred cceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 4789998884 99999999999999988754
No 452
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.71 E-value=1.8e+02 Score=21.10 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCceeeecC------CCCCEEEEecCcccCHHHHHHHHH
Q 042283 31 TLDVMDKMKQMGVLIGKGG------FYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g------~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
+..+.+-+..+|+-+.++. +..-++++.|||-+.+--+..++.
T Consensus 184 ~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~ 232 (431)
T COG4408 184 AEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFY 232 (431)
T ss_pred HHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhC
Confidence 4456677778999888864 355689999999999887776654
No 453
>COG5423 Predicted metal-binding protein [Function unknown]
Probab=25.45 E-value=93 Score=19.71 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=19.5
Q ss_pred ecCcccCHHHHHHHHHHHHHhH
Q 042283 58 APPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 58 ~PPL~i~~~eid~~~~~l~~~l 79 (82)
.||.+.|-+|..+++..-++++
T Consensus 51 CPPhvps~~EfreilkeYr~al 72 (167)
T COG5423 51 CPPHVPSIEEFREILKEYRRAL 72 (167)
T ss_pred CCCCCCCHHHHHHHHHHHhhhh
Confidence 8999999999999998877765
No 454
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=25.44 E-value=1.1e+02 Score=16.95 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=14.6
Q ss_pred cccCHHHHHHHHHHHHHhHh
Q 042283 61 LCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l~ 80 (82)
|-++++|++.+..-+.+.+.
T Consensus 17 l~l~~ee~~~~~~~l~~il~ 36 (95)
T PRK00034 17 LELSEEELEKFAGQLNKILD 36 (95)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 45788888888877776653
No 455
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=25.40 E-value=1.4e+02 Score=17.65 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=19.8
Q ss_pred EEecCcccCHHHHHHHHHHHHHh
Q 042283 56 RIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 56 ~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
++.+|.+=|++|++.+++.+++=
T Consensus 66 ~i~~g~lPt~~eVe~Fl~~v~~d 88 (105)
T PF09702_consen 66 YIIVGYLPTDEEVEDFLDDVERD 88 (105)
T ss_pred EEecCCCCChHHHHHHHHHHHHH
Confidence 57789999999999999988753
No 456
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=25.26 E-value=1.4e+02 Score=16.91 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=18.9
Q ss_pred EEEecCcccCHHHHHHHHHHHHHhHhc
Q 042283 55 FRIAPPLCFTKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 55 i~~~PPL~i~~~eid~~~~~l~~~l~~ 81 (82)
+.+.|- +++++++.+++.+.+.+.+
T Consensus 12 ~Il~p~--l~e~~~~~~~~~~~~~i~~ 36 (97)
T CHL00123 12 YLLKPD--LNEEELLKWIENYKKLLRK 36 (97)
T ss_pred EEECCC--CCHHHHHHHHHHHHHHHHH
Confidence 334443 4899999999999988864
No 457
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=24.71 E-value=2.9e+02 Score=20.34 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=36.1
Q ss_pred ecccceEEEEEeeeCCCCchHHHHHHHHHHH--Hc--------Cceeee---------------cCCCCCEEEEecCccc
Q 042283 9 ARGWGFMLGVEFVTDSQLRKAETLDVMDKMK--QM--------GVLIGK---------------GGFYGNVFRIAPPLCF 63 (82)
Q Consensus 9 vRg~Glm~gie~~~~~~~~~~~~~~v~~~~~--~~--------Gll~~~---------------~g~~~~~i~~~PPL~i 63 (82)
-+|.|-++.+++.... +.++++++.+. .+ -+.+-| .|..++.||++ +
T Consensus 336 ~~g~g~vltF~~kgg~----ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlS----V 407 (426)
T COG2873 336 PKGAGAVLTFGVKGGY----EAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLS----V 407 (426)
T ss_pred cCCCceEEEEEecChH----HHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEE----e
Confidence 4788999999997543 34555554332 11 112211 12234444433 4
Q ss_pred CHHHHHHHHHHHHHhHhc
Q 042283 64 TKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 64 ~~~eid~~~~~l~~~l~~ 81 (82)
--|+++.++.=|+++|++
T Consensus 408 GIEd~~DiiaDl~qAl~~ 425 (426)
T COG2873 408 GIEDIDDIIADLEQALEA 425 (426)
T ss_pred ccCCHHHHHHHHHHHHhc
Confidence 456677777778887754
No 458
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.62 E-value=1.2e+02 Score=15.93 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCceeeec------CCCCCEEEEecCc----ccCHHHHHHHHHHHHHhHh
Q 042283 29 AETLDVMDKMKQMGVLIGKG------GFYGNVFRIAPPL----CFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~------g~~~~~i~~~PPL----~i~~~eid~~~~~l~~~l~ 80 (82)
..-..+...+.++|+-+..+ +..-+++++..|- ..+++.++++.+.|.+++.
T Consensus 12 gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 12 GLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 36678888899999866432 2345677776654 3467788899998888775
No 459
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=24.57 E-value=1.1e+02 Score=24.41 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.7
Q ss_pred EEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 54 VFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 54 ~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
-++++=|++.+.+|+.++-+.++++.+
T Consensus 695 ~~~IMiPmV~~~~E~~~~k~~i~~~~~ 721 (856)
T TIGR01828 695 HPEIMIPLVGEKNELKILKDVLEEVAA 721 (856)
T ss_pred CeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 489999999999999999988887753
No 460
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=24.33 E-value=1.2e+02 Score=15.81 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=16.3
Q ss_pred cccCHHHHHHHHHHHHHhHh
Q 042283 61 LCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l~ 80 (82)
..+++++++.+++-++.+|-
T Consensus 16 ~~~~~~~i~~~l~ele~~Li 35 (75)
T PF02881_consen 16 IFLTEKDIEEFLEELEEALI 35 (75)
T ss_dssp SSCTHHHHHHHHHHHHHHHH
T ss_pred ccccHHhHHHHHHHHHHHHH
Confidence 45689999999999988873
No 461
>PRK09894 diguanylate cyclase; Provisional
Probab=24.08 E-value=2.1e+02 Score=18.62 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=26.2
Q ss_pred HHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 34 VMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 34 v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+.+.+.+...+.+.+| ..-+.++|. .+.++...+++.+.+.+.
T Consensus 192 l~~~~~~~~~~~R~~g--~~F~ill~~--~~~~~~~~~~~~l~~~~~ 234 (296)
T PRK09894 192 LASWTRDYETVYRYGG--EEFIICLKA--ATDEEACRAGERIRQLIA 234 (296)
T ss_pred HHHhCCCCCEEEEEcC--CeEEEEeCC--CCHHHHHHHHHHHHHHHH
Confidence 3344444566777653 444556665 467777778887777654
No 462
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=24.05 E-value=76 Score=20.03 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=11.4
Q ss_pred ecCcccCHHHHHHHHHHHHH
Q 042283 58 APPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 58 ~PPL~i~~~eid~~~~~l~~ 77 (82)
.||+=+|.+|..++++.|+.
T Consensus 14 ipPlPL~a~Qt~~lielLk~ 33 (154)
T PF11791_consen 14 IPPLPLNAEQTAELIELLKN 33 (154)
T ss_dssp -------HHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 48999999999999998864
No 463
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=24.04 E-value=1.5e+02 Score=18.31 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=23.2
Q ss_pred CCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 50 FYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 50 ~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
...+...+.+...++++|++.+-+..++
T Consensus 108 ~~~g~~~v~~~v~l~~~e~~~l~~l~~~ 135 (151)
T TIGR00854 108 FSNGKKQITKKVSVDDQDITAFRFLKQR 135 (151)
T ss_pred cCCCCEEEecceeeCHHHHHHHHHHHHc
Confidence 4567889999999999999988776654
No 464
>PF11115 DUF2623: Protein of unknown function (DUF2623); InterPro: IPR022574 This family is conserved in the Enterobacteriaceae family. Several members are named as YghW. The function is not known.
Probab=23.98 E-value=26 Score=20.21 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=19.3
Q ss_pred ccceEEEEEeeeCCCCchHHHHHHHHHHHH--cCceee
Q 042283 11 GWGFMLGVEFVTDSQLRKAETLDVMDKMKQ--MGVLIG 46 (82)
Q Consensus 11 g~Glm~gie~~~~~~~~~~~~~~v~~~~~~--~Gll~~ 46 (82)
|.|+|.|+....+. .+..+...|.+ +|.++.
T Consensus 6 G~GlmaGl~a~~~~-----sa~~~~~~C~DYrRGfV~G 38 (95)
T PF11115_consen 6 GKGLMAGLKASEPD-----SASEMARFCADYRRGFVCG 38 (95)
T ss_pred hhHHHhhhccCCCC-----CHHHHHHHHHHhhcchhhh
Confidence 78999999776443 34555566653 455543
No 465
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=23.93 E-value=1.2e+02 Score=15.72 Aligned_cols=49 Identities=8% Similarity=0.150 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSM 79 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l 79 (82)
....++.+.+.++|+-+.......+...++ +++.+++.+..+..+.+.+
T Consensus 16 ~~~~~i~~~L~~~~I~v~~i~~~~~~~~is--f~v~~~d~~~~~~~l~~~~ 64 (80)
T cd04921 16 GIAARIFSALARAGINVILISQASSEHSIS--FVVDESDADKALEALEEEF 64 (80)
T ss_pred cHHHHHHHHHHHCCCcEEEEEecCCcceEE--EEEeHHHHHHHHHHHHHHH
Confidence 356678888889887653221111222333 6788899999888888776
No 466
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.67 E-value=1.1e+02 Score=15.15 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCceeeec--CCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 29 AETLDVMDKMKQMGVLIGKG--GFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~--g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....++.+.+.++|+-+... +.....+. +++.+++.++.++.+.+.+-
T Consensus 16 ~~~~~if~~L~~~~I~v~~i~q~~s~~~is----f~v~~~~~~~a~~~lh~~~~ 65 (66)
T cd04919 16 GIAGRMFTTLADHRINIEMISQGASEINIS----CVIDEKDAVKALNIIHTNLL 65 (66)
T ss_pred CHHHHHHHHHHHCCCCEEEEEecCccceEE----EEEeHHHHHHHHHHHHHHHh
Confidence 46778899999999855221 11222332 57788999999999888764
No 467
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=23.64 E-value=1e+02 Score=15.70 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=13.6
Q ss_pred ccCHHHHHHHHHHHHH
Q 042283 62 CFTKEDANYLVDVMDC 77 (82)
Q Consensus 62 ~i~~~eid~~~~~l~~ 77 (82)
.+|++|++.++.-|.+
T Consensus 74 ~ls~~e~~~l~ayl~s 89 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRS 89 (91)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999887764
No 468
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=23.48 E-value=2.4e+02 Score=18.93 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCcc--cCHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC--FTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~--i~~~eid~~~~~l~~~l~ 80 (82)
+..+.+.+-+.||-..+-.+.+.-+.+.-||. .+-+++..+...+.+.+.
T Consensus 121 A~~vr~~L~~lgL~sf~KTSG~kGlHv~vPl~~~~~~~~~r~fa~~iA~~l~ 172 (228)
T cd04865 121 ALLVREVLDELGLRGYPKTSGARGLHIYVPIAPRYTFEEVRRFAELLAREVE 172 (228)
T ss_pred HHHHHHHHHHcCCccceEccCCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 44455566678885444323467788888876 566888888888877765
No 469
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=23.45 E-value=1e+02 Score=18.25 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHhHhc
Q 042283 64 TKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 64 ~~~eid~~~~~l~~~l~~ 81 (82)
|++|.+.+...+++||+.
T Consensus 92 Se~eA~~F~~~v~~Al~~ 109 (111)
T cd01207 92 SKEDATMFASAMLSALEV 109 (111)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 789999999999999863
No 470
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.40 E-value=1e+02 Score=16.87 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=16.2
Q ss_pred ecCcccCHHHHHHHHHHHHHh
Q 042283 58 APPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 58 ~PPL~i~~~eid~~~~~l~~~ 78 (82)
.|..+++.+|..++.+.|++.
T Consensus 4 iP~viv~~~~~~~i~~rLd~i 24 (70)
T PF04210_consen 4 IPQVIVDPDDFNEIMKRLDEI 24 (70)
T ss_pred CCeeeeCHHHHHHHHHHHHHH
Confidence 466777889999888888753
No 471
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=23.38 E-value=1e+02 Score=18.35 Aligned_cols=18 Identities=0% Similarity=0.043 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHhHhc
Q 042283 64 TKEDANYLVDVMDCSMTK 81 (82)
Q Consensus 64 ~~~eid~~~~~l~~~l~~ 81 (82)
|++|++.+.+.++++++.
T Consensus 92 Sk~ea~~F~~~f~~~~~~ 109 (111)
T cd01206 92 SEQQLTKFAEKFQEVKEA 109 (111)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 789999999999998863
No 472
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.33 E-value=38 Score=22.33 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=13.9
Q ss_pred CCCEEEEecCcccCHHH
Q 042283 51 YGNVFRIAPPLCFTKED 67 (82)
Q Consensus 51 ~~~~i~~~PPL~i~~~e 67 (82)
..+++.|-||++-|+++
T Consensus 110 ~VDvLvfNPPYVpt~~~ 126 (209)
T KOG3191|consen 110 SVDVLVFNPPYVPTSDE 126 (209)
T ss_pred CccEEEECCCcCcCCcc
Confidence 46789999999988754
No 473
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=23.27 E-value=73 Score=22.94 Aligned_cols=18 Identities=17% Similarity=0.528 Sum_probs=16.2
Q ss_pred CcccCHHHHHHHHHHHHH
Q 042283 60 PLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 60 PL~i~~~eid~~~~~l~~ 77 (82)
||.+++++++++++.|++
T Consensus 169 PL~ls~~~L~~ll~~L~~ 186 (369)
T COG1509 169 PLSLSDKKLEWLLKRLRA 186 (369)
T ss_pred ccccCHHHHHHHHHHHhc
Confidence 889999999999998875
No 474
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=23.03 E-value=38 Score=17.37 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDV 74 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~ 74 (82)
+.+.++.+.++++|.-++-.-... =.+|++|+|++++-
T Consensus 12 e~aa~iAk~A~~~g~svre~v~~~--------g~lt~ee~d~ll~p 49 (55)
T PF10415_consen 12 EKAAEIAKEALAEGRSVREVVLEE--------GLLTEEELDELLDP 49 (55)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHT--------TSS-HHHHHHHTSH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHc--------CCCCHHHHHHHcCH
Confidence 346677778887776543210000 13589999988764
No 475
>PRK06635 aspartate kinase; Reviewed
Probab=23.00 E-value=2.8e+02 Score=19.55 Aligned_cols=48 Identities=8% Similarity=0.080 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....++.+.+.++|+-+....... ....+++.+++.+..++.|.+.+.
T Consensus 355 g~~a~i~~~La~~~Ini~~i~ss~----~~is~vv~~~d~~~a~~~Lh~~f~ 402 (404)
T PRK06635 355 GVAAKMFEALAEEGINIQMISTSE----IKISVLIDEKYLELAVRALHEAFG 402 (404)
T ss_pred hHHHHHHHHHHHCCCCEEEEEecC----CeEEEEEcHHHHHHHHHHHHHHHC
Confidence 467788999999998665432222 333478899999999999988774
No 476
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=22.88 E-value=99 Score=14.31 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
...++.+.+.++++-+.......+...+ -+++++++.++++..+
T Consensus 16 ~~~~i~~~l~~~~i~i~~i~~~~~~~~~--s~~v~~~~~~~~~~~l 59 (60)
T cd04868 16 VAAKIFSALAEAGINVDMISQSESEVNI--SFTVDESDLEKAVKAL 59 (60)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCcEEE--EEEEeHHHHHHHHHHh
Confidence 5667888888888755433222222222 2678888888877654
No 477
>PRK13679 hypothetical protein; Provisional
Probab=22.79 E-value=1.9e+02 Score=17.67 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=24.3
Q ss_pred CCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 52 GNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 52 ~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
..+|.+..|..+++++++++.+.+++..+
T Consensus 32 ~pHITL~f~g~~~~~~~~~l~~~l~~~~~ 60 (168)
T PRK13679 32 PPHITLKEPFEISDEQLDSIVEELRAIAS 60 (168)
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 34888888888999999999999887654
No 478
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=22.71 E-value=1.2e+02 Score=15.30 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=12.5
Q ss_pred cCHHHHHHHHHHHHHhHh
Q 042283 63 FTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 63 i~~~eid~~~~~l~~~l~ 80 (82)
|+++-...++..+++++.
T Consensus 28 I~p~La~kVL~~FDksi~ 45 (49)
T PF02268_consen 28 ITPQLAMKVLEQFDKSIN 45 (49)
T ss_dssp S-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 566667778888887775
No 479
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=22.48 E-value=2.5e+02 Score=18.82 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 32 LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 32 ~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
.+..+.+.++|+.+.. +.-+.|-++.++++++++.+.+.+
T Consensus 162 l~~~~~l~~~g~~ve~------r~lviPg~~d~~e~i~~i~~~i~~ 201 (260)
T COG1180 162 LENLELLADLGVHVEI------RTLVIPGYNDDEEEIRELAEFIAD 201 (260)
T ss_pred HHHHHHHHcCCCeEEE------EEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556677788887753 355778888999999999998886
No 480
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=22.40 E-value=95 Score=18.02 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=11.1
Q ss_pred cccCHHHHHHHHHHHHHh
Q 042283 61 LCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~ 78 (82)
+.+|++|+|..++.+.+.
T Consensus 65 I~vsd~evd~~i~~ia~~ 82 (118)
T PF09312_consen 65 IKVSDEEVDEAIANIAKQ 82 (118)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 467899999988876643
No 481
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=21.98 E-value=1.8e+02 Score=17.95 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=23.1
Q ss_pred CCCCEEEEecCcccCHHHHHHHHHHHHH
Q 042283 50 FYGNVFRIAPPLCFTKEDANYLVDVMDC 77 (82)
Q Consensus 50 ~~~~~i~~~PPL~i~~~eid~~~~~l~~ 77 (82)
...+...+.+...+|++|++.+-+..++
T Consensus 107 ~~~~~~~v~~~v~l~~~e~~~lk~l~~~ 134 (151)
T cd00001 107 FRPGKVQITKAVSLDEEDVAAFKELAQK 134 (151)
T ss_pred CCCCCEEEecceecCHHHHHHHHHHHHc
Confidence 4567889999999999999988776654
No 482
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=21.97 E-value=2.8e+02 Score=19.23 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 28 KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 28 ~~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
.+.+.++.++|.+.|.+.... ++ |+.+.++++++..++.++
T Consensus 49 ~~~~~~l~~Ac~~~GFf~v~n--HG----------I~~~l~~~~~~~~~~fF~ 89 (337)
T PLN02639 49 AQVVQQIGDACRRYGFFQVIN--HG----------VSAELVEKMLAVAHEFFR 89 (337)
T ss_pred HHHHHHHHHHHHhCCEEEEEc--CC----------CCHHHHHHHHHHHHHHhc
Confidence 356788999999999987653 33 578888988888776653
No 483
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.87 E-value=2.2e+02 Score=19.24 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCceeee--cCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 30 ETLDVMDKMKQMGVLIGK--GGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~--~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
....++..|.+.||=... +-+..|- -=+++|++.+++.+.+.+.
T Consensus 41 ~l~~i~~~c~~~GI~~lTvYaFS~EN~-------~R~~~EV~~Lm~L~~~~l~ 86 (239)
T PRK14839 41 AIRRVVEAAPDLGIGTLTLYAFSSDNW-------RRPAAEVGGLMRLLRAYLR 86 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEEEechhhc-------CCCHHHHHHHHHHHHHHHH
Confidence 456788999999974321 1111222 2268999999998887764
No 484
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=21.87 E-value=1.3e+02 Score=19.87 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHH
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVD 73 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~ 73 (82)
..+..+.+.+...|.++..+-..... .=.||+.++++|+..++.
T Consensus 144 ~Y~~~l~~lL~pgg~llll~~~~~~~-~~GPPf~v~~~e~~~lf~ 187 (226)
T PRK13256 144 NYAKMMLEVCSNNTQILLLVMEHDKK-SQTPPYSVTQAELIKNFS 187 (226)
T ss_pred HHHHHHHHHhCCCcEEEEEEEecCCC-CCCCCCcCCHHHHHHhcc
Confidence 34555666666666544333212222 257999999999988764
No 485
>PF02560 Cyanate_lyase: Cyanate lyase C-terminal domain; InterPro: IPR003712 Some bacteria can overcome the toxicity of environmental cyanate by hydrolysis of cyanate. This reaction is catalyzed by cyanate lyase (also known as cyanase) []. Cyanate lyase is found in bacteria and plants and catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. The cyanate lyase monomer is composed of two domains. The N-terminal domain shows structural similarity to the DNA-binding alpha-helix bundle motif. The C-terminal domain has an 'open fold' with no structural homology to other proteins. The dimer structure reveals the C-terminal domains to be intertwined, and the decamer is formed by a pentamer of these dimers. The active site of the enzyme is located between dimers and is comprised of residues from four adjacent subunits of the homodecamer []. ; GO: 0008824 cyanate hydratase activity, 0009439 cyanate metabolic process; PDB: 2IV1_B 2IUO_A 2IVQ_B 1DW9_A 1DWK_E 2IVG_G 2IU7_J 2IVB_A.
Probab=21.70 E-value=86 Score=17.29 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=10.4
Q ss_pred ecccceEEEEEeee
Q 042283 9 ARGWGFMLGVEFVT 22 (82)
Q Consensus 9 vRg~Glm~gie~~~ 22 (82)
-=|-|.|.||+|.-
T Consensus 33 ~FGDGIMSAIdF~~ 46 (73)
T PF02560_consen 33 KFGDGIMSAIDFKM 46 (73)
T ss_dssp HT-SEEEEEEEEEE
T ss_pred hhCcceEEEeeEEE
Confidence 34789999999964
No 486
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=21.65 E-value=1.5e+02 Score=20.64 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=17.1
Q ss_pred cccCHHHHHHHHHHHHHhHh
Q 042283 61 LCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 61 L~i~~~eid~~~~~l~~~l~ 80 (82)
..+|++|++.+++++++++.
T Consensus 359 ~~l~~~~~~~i~~~i~~~~~ 378 (379)
T PRK11658 359 PDMTDADVDRVITALQQIAG 378 (379)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 45899999999999998764
No 487
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=21.65 E-value=65 Score=24.41 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=17.8
Q ss_pred CCCEEEEecCcccCHHHHHHHH
Q 042283 51 YGNVFRIAPPLCFTKEDANYLV 72 (82)
Q Consensus 51 ~~~~i~~~PPL~i~~~eid~~~ 72 (82)
....+++.||-.+|-|+.-+.+
T Consensus 546 ~~~~~~~~~~~~~~le~~~~~~ 567 (594)
T TIGR01394 546 KDEAVKLTPPRKLSLEQALEYI 567 (594)
T ss_pred CCcceeeCCCccCCHHHHHhhc
Confidence 5789999999999988765544
No 488
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=21.54 E-value=1.1e+02 Score=19.03 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=17.1
Q ss_pred cCcccCHHHHHHHHHHHHHhHh
Q 042283 59 PPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 59 PPL~i~~~eid~~~~~l~~~l~ 80 (82)
|+..+..+..-.++..|+++|.
T Consensus 88 p~~sV~~~~F~~~L~~LD~cl~ 109 (157)
T PF04136_consen 88 PGSSVNSDSFKPMLSRLDECLE 109 (157)
T ss_pred CCCcccchHHHHHHHHHHHHHH
Confidence 5556678888889999998874
No 489
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=21.48 E-value=70 Score=19.34 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=9.8
Q ss_pred cCHHHHHHHHHHHHH
Q 042283 63 FTKEDANYLVDVMDC 77 (82)
Q Consensus 63 i~~~eid~~~~~l~~ 77 (82)
+|++||++++.....
T Consensus 35 Lt~~EI~~al~~a~~ 49 (136)
T PF04695_consen 35 LTEEEIDEALGRAGS 49 (136)
T ss_dssp --HHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHhcCC
Confidence 578999998887543
No 490
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=21.40 E-value=2.2e+02 Score=21.37 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCceee---ecCCCCC--EEEEecCcccCHHHHHHHHHHHHHh
Q 042283 30 ETLDVMDKMKQMGVLIG---KGGFYGN--VFRIAPPLCFTKEDANYLVDVMDCS 78 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~---~~g~~~~--~i~~~PPL~i~~~eid~~~~~l~~~ 78 (82)
.+-.|-..++++|.... |.+..+| .+.++|| .++.+++|.+++-|+..
T Consensus 454 VaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~-a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 454 VAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNP-ALTEADLDFLLDEIERL 506 (510)
T ss_pred hCcHHHHHHHhccceeeEecccccccchhheecccc-hhhhhhHHHHHHHHHHh
Confidence 34567788999997543 3344455 3457788 99999999999988764
No 491
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=21.35 E-value=2.9e+02 Score=19.20 Aligned_cols=42 Identities=26% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCceeeecCCCCCEEEEecCccc---CHHHHHHHHHHHHHhHh
Q 042283 31 TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF---TKEDANYLVDVMDCSMT 80 (82)
Q Consensus 31 ~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i---~~~eid~~~~~l~~~l~ 80 (82)
-+.+++.+.++||-...+ ++|-+.+ ++++++.++..+++..+
T Consensus 58 l~~L~~~a~~~~V~Fv~a--------isPg~~~~~s~~~d~~~L~~K~~ql~~ 102 (306)
T PF07555_consen 58 LKELADAAKANGVDFVYA--------ISPGLDICYSSEEDFEALKAKFDQLYD 102 (306)
T ss_dssp HHHHHHHHHHTT-EEEEE--------EBGTTT--TSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCEEEEE--------ECcccccccCcHHHHHHHHHHHHHHHh
Confidence 456888899999865433 5555554 48999999999988754
No 492
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=21.31 E-value=40 Score=21.56 Aligned_cols=12 Identities=50% Similarity=1.085 Sum_probs=9.2
Q ss_pred EEEecCcccCHH
Q 042283 55 FRIAPPLCFTKE 66 (82)
Q Consensus 55 i~~~PPL~i~~~ 66 (82)
-.+.||||+.+.
T Consensus 150 CVlfPpLCf~D~ 161 (168)
T TIGR02837 150 CVVFPPLCFTDR 161 (168)
T ss_pred EEecCcceeecc
Confidence 457899998764
No 493
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=21.30 E-value=1.4e+02 Score=15.49 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=13.4
Q ss_pred cCHHHHHHHHHHHHHhHh
Q 042283 63 FTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 63 i~~~eid~~~~~l~~~l~ 80 (82)
++++|++..++..++..+
T Consensus 19 ~~~~e~~~~~~~~~~~~~ 36 (64)
T PF07637_consen 19 LTDEEVDRYLALYDSARA 36 (64)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 467788888888777665
No 494
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.22 E-value=2.6e+02 Score=18.60 Aligned_cols=45 Identities=7% Similarity=-0.037 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCceeee--cCCCCCEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 29 AETLDVMDKMKQMGVLIGK--GGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~--~g~~~~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+....++..|.+.||=... +-+..|.- =+++|++.+++.+.+.+.
T Consensus 24 ~~l~~i~~~c~~~GI~~lT~yaFS~eN~~-------R~~~Ev~~Lm~l~~~~l~ 70 (229)
T PRK10240 24 KSVRRAVSFAANNGIEALTLYAFSSENWN-------RPAQEVSALMELFVWALD 70 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeehhhcC-------cCHHHHHHHHHHHHHHHH
Confidence 3456789999999974321 11122322 267999999999887764
No 495
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=21.21 E-value=1.3e+02 Score=23.48 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=23.9
Q ss_pred CEEEEecCcccCHHHHHHHHHHHHHhHh
Q 042283 53 NVFRIAPPLCFTKEDANYLVDVMDCSMT 80 (82)
Q Consensus 53 ~~i~~~PPL~i~~~eid~~~~~l~~~l~ 80 (82)
+-++++=|++.+-+|+.+.-+.++++-.
T Consensus 550 g~l~im~Pmv~~~~E~~~~~~~~~~~~~ 577 (748)
T PRK11061 550 GNLSILLPMVTSIDEVDEARRLIDRAGR 577 (748)
T ss_pred CCeEEEhhcCCCHHHHHHHHHHHHHHHH
Confidence 4589999999999999999888887654
No 496
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.97 E-value=1.1e+02 Score=14.32 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCceeeecCC---CCCEEEEecCcccCHHHHHHHHHHH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGF---YGNVFRIAPPLCFTKEDANYLVDVM 75 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~---~~~~i~~~PPL~i~~~eid~~~~~l 75 (82)
...++.+.+.++|+-+..... ..+...+. +++++++.+..+..+
T Consensus 14 ~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is--~~v~~~~~~~~~~~l 60 (61)
T cd04891 14 VAAKIFSALAEAGINVDMIVQSVSRGGTTDIS--FTVPKSDLEKALAIL 60 (61)
T ss_pred HHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEE--EEEeHHHHHHHHHHh
Confidence 566788888899886643211 11113333 778888888877654
No 497
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.91 E-value=70 Score=19.79 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=15.4
Q ss_pred EecCcccCHHHHHHHHHH
Q 042283 57 IAPPLCFTKEDANYLVDV 74 (82)
Q Consensus 57 ~~PPL~i~~~eid~~~~~ 74 (82)
++||-+|.+.++.+.+..
T Consensus 126 lSPphViH~m~v~Eai~~ 143 (156)
T COG4019 126 LSPPHVIHKMDVEEAIKK 143 (156)
T ss_pred CCCchhhhHhhHHHHHHH
Confidence 689999999999987753
No 498
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=20.90 E-value=1.4e+02 Score=15.25 Aligned_cols=31 Identities=19% Similarity=0.507 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCceeeecCCCCCEEEEecC
Q 042283 29 AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60 (82)
Q Consensus 29 ~~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PP 60 (82)
.....+.+.+.+.|++-+..+ .+...+..||
T Consensus 37 ~~v~~~L~~L~~~GlV~~~~~-~~~~Y~a~~p 67 (68)
T PF01978_consen 37 STVYRALKSLEEKGLVEREEG-RPKVYRAVPP 67 (68)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE-CCEEEEEE-H
T ss_pred HHHHHHHHHHHHCCCEEEEcC-ceEEEEEeCC
Confidence 456778899999999987654 2334444444
No 499
>cd00559 Cyanase_C Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate. It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the toxicity of environmental cyanate and to use cyanate as a source of nitrogen for growth. This enzyme is a homodecamer, formed by five dimers. Each monomer is composed of two domains, an N-terminal helix-turn-helix and this structurally unique C-terminal domain.
Probab=20.84 E-value=79 Score=17.22 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=10.9
Q ss_pred cccceEEEEEeee
Q 042283 10 RGWGFMLGVEFVT 22 (82)
Q Consensus 10 Rg~Glm~gie~~~ 22 (82)
=|-|.|.||+|.-
T Consensus 30 FGDGIMSAIdF~~ 42 (69)
T cd00559 30 FGDGIMSAIDFKL 42 (69)
T ss_pred cCCceeeeEEeee
Confidence 3889999999964
No 500
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=20.60 E-value=3.2e+02 Score=21.96 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCceeeecCCCCCEEEEecCcccCHHHHHHHHHHHH
Q 042283 30 ETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD 76 (82)
Q Consensus 30 ~~~~v~~~~~~~Gll~~~~g~~~~~i~~~PPL~i~~~eid~~~~~l~ 76 (82)
.+.++...+.++++.++.. ..++|-++--=+++++|+|.++.++.
T Consensus 434 s~~~~l~rA~~~~iNlr~~--ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 434 SAEEVLDRAAKRQINLRLV--EDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred cHHHHHHHHHhhcCceEEe--ecCceEEeecccccHHHHHHHHHHHc
Confidence 3567888888888888875 47889999899999999999998875
Done!