RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 042283
(82 letters)
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 87.3 bits (217), Expect = 5e-22
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
+K+ IGD RG G M+GVE V D ++ ++ + + G+L+ G +GNV RI
Sbjct: 362 EKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRI 421
Query: 58 APPLCFTKEDANYLVDVMD 76
PPL + E+ + +D+++
Sbjct: 422 LPPLTISDEELDEGLDILE 440
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 78.0 bits (193), Expect = 1e-18
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETL---DVMDKMKQMGVLIGKGGFYGNVFRI 57
+K+ +GD RG G M+G+E V D + + ++ + G+L+ G GNV R+
Sbjct: 334 EKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG--GNVIRL 391
Query: 58 APPLCFTKEDANYLVDVMD 76
PPL T+E+ + +D +D
Sbjct: 392 LPPLIITEEEIDEGLDALD 410
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 73.5 bits (181), Expect = 4e-17
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
D++ IGD RG G LG+E VTD + + A V + ++ G+LIG G + NV +I
Sbjct: 927 DRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKI 986
Query: 58 APPLCFTKEDANYLVDVMD 76
PPL F++ DA++L++V+D
Sbjct: 987 RPPLIFSRADADHLLEVLD 1005
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 70.4 bits (173), Expect = 5e-16
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQ-LRKA--ETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
D++ IG G G LGVE V D Q L A ET + D++ ++GV++ G + N+ +I
Sbjct: 887 DRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKI 946
Query: 58 APPLCFTKEDANYLVDVMD 76
PPLC +E A++ VD++D
Sbjct: 947 KPPLCLDRESADFFVDMLD 965
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 63.9 bits (156), Expect = 1e-13
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKM----KQMGVLIGKGGF----YGNVFRI 57
+GD RG G ++G+E V D + ++ D + + K+ G++IGK G Y NV +
Sbjct: 366 VGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTL 425
Query: 58 APPLCFTKEDANYLVDVMDCSM 79
+PPL + E+ ++V + ++
Sbjct: 426 SPPLVISSEEIAFIVGTLKTAL 447
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 61.4 bits (150), Expect = 8e-13
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
+Y + + RG G M+G+E + R D++ +++ GVL+ G NV R PP
Sbjct: 325 RRYPLVKEVRGRGLMIGIELKEPYRAR-----DIVRALREEGVLVLPAG--PNVIRFLPP 377
Query: 61 LCFTKEDANYLVDVMD 76
L T+E+ + +D ++
Sbjct: 378 LVITEEEIDEALDALE 393
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 57.7 bits (140), Expect = 1e-11
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 1 DKYGTIGDARGWGFMLGVEFV-TDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
+K+ IGD RG G M+G+E V D + ++DK + G+L G GNV R+ P
Sbjct: 348 EKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIP 407
Query: 60 PLCFTKEDANYLVDVMDCSMTK 81
PL TKE+ + +D++D ++T+
Sbjct: 408 PLTVTKEEIDEGLDILDEALTE 429
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 57.1 bits (139), Expect = 2e-11
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
+KY I + RG G M+G+E + +++ K + G+LI G NV R+ PP
Sbjct: 323 EKYPGIKEVRGLGLMIGIELDRPAA-------EIVKKALEKGLLINVTG--DNVLRLLPP 373
Query: 61 LCFTKEDANYLVDVMD 76
L +KE+ + VD ++
Sbjct: 374 LIISKEEIDEAVDRLE 389
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 56.2 bits (136), Expect = 5e-11
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQM--------GVLIGKGGFYG 52
+++ +GD RG G ML ++ V D R E +D GVL+ G
Sbjct: 362 ERFELVGDVRGKGLMLALDLVADKATR--EPIDPSKGYANAVADVARENGVLVRPS---G 416
Query: 53 NVFRIAPPLCFTKEDANYLVDVMDCSMTK 81
++PPL +ED + +VD +D ++
Sbjct: 417 TKIILSPPLVIQREDVDRIVDALDAGLSA 445
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 54.2 bits (130), Expect = 3e-10
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAE-TLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
+ + IGD RG G M+GVE V ++ E T + + ++G+++ G +GNV RI P
Sbjct: 362 ESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITP 421
Query: 60 PLCFTKEDANYLVDVMD 76
PL TKE A +++M+
Sbjct: 422 PLVITKEIAEKGLEIME 438
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 53.2 bits (128), Expect = 5e-10
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
K+ IGD RG G M+GV+ V D + + E V+ + ++G+++ F GNV RI
Sbjct: 345 KKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTF--FSGNVLRI 402
Query: 58 APPLCFTKEDANYLVDVMD 76
PPL KE + +D+++
Sbjct: 403 QPPLTIEKEVLDEGLDILE 421
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 52.9 bits (128), Expect = 7e-10
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVM----DKMKQMGVLIGKGGFYGNVFRIAPPL 61
+GD RG G + +E V D + V + G+LI G +V + PPL
Sbjct: 367 VGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLG---DVIYLMPPL 423
Query: 62 CFTKEDANYLVDVM 75
T+E+ + LVD +
Sbjct: 424 IITREEIDELVDAL 437
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 52.4 bits (126), Expect = 9e-10
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
KY +GD RG+G +G++ V+D +L+ + L + + + GV+I GNV R
Sbjct: 349 KYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVI--IAVAGNVLRFQ 406
Query: 59 PPLCFTKEDANYLVDVMDCSMTK 81
PPL T E + ++ ++ + T
Sbjct: 407 PPLVITYEQLDTALNTIEQAFTA 429
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 51.8 bits (125), Expect = 2e-09
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLD-VMDKMKQMGVL-IGKGGFYGNVFRIA 58
+KY IGD RG G M+GVE V D + + D V+ + + G+L +G G + RI
Sbjct: 360 EKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG---KSAIRII 416
Query: 59 PPLCFTKEDANYLVDVMD 76
PPL T+E+A+ +++++
Sbjct: 417 PPLIITEEEADIGLEILE 434
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 50.8 bits (122), Expect = 4e-09
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
+ IGD RG G M+ +E V T + GV++ G YGNV R+
Sbjct: 360 AEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLL 419
Query: 59 PPL 61
PPL
Sbjct: 420 PPL 422
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 50.1 bits (120), Expect = 7e-09
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRK------AETLDVMDKMKQMGVLI-----GKGG 49
+ IGD RG G ++GVEFV D + ++ A +++ + G+L+ G+ G
Sbjct: 346 QQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDG 405
Query: 50 FYGNVFRIAPPLCFTKEDANYLVDVM 75
G+ IAPP+ T + + L+ +
Sbjct: 406 KEGDAVIIAPPMTITYSELDELLSIF 431
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 48.7 bits (116), Expect = 2e-08
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
KY IGD RG G M E V D + + K T ++ + + G+L+ G YGNV R+
Sbjct: 361 KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVL 420
Query: 59 PPLCFTKEDAN 69
PL T E
Sbjct: 421 MPLVITDEQLE 431
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 43.9 bits (104), Expect = 1e-06
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 10 RGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDAN 69
RG G MLG+E + D++ K + G+L+ G V R PPL TKE+ +
Sbjct: 319 RGKGLMLGIELEAPCK-------DIVKKALEKGLLVNCAG--PKVLRFLPPLIITKEEID 369
Query: 70 YLVDVMD 76
V ++
Sbjct: 370 EAVSALE 376
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 43.7 bits (103), Expect = 1e-06
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 6 IGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC 62
IGD RG G M+ VE V D + G+L+ G +GN+ R PPL
Sbjct: 343 IGDVRGLGAMIAVELV-DPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLT 401
Query: 63 FTKEDANYLVDVM 75
E + +D++
Sbjct: 402 IGDELLSEGLDIL 414
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 43.5 bits (103), Expect = 1e-06
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 5 TIGDARGWGFMLGVEFVTDSQ------LRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
+GD RG M VE V D A + ++ G+L+ ++ ++
Sbjct: 373 LVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRP---LEHLCVLS 429
Query: 59 PPLCFTKEDANYLVDVMDCSMT 80
PPL T+ + +V ++ ++
Sbjct: 430 PPLIITRAQIDEIVAILRAAIE 451
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 43.2 bits (102), Expect = 2e-06
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
K+ IGD RG G M+ +E D K T ++ + + G+++ G Y NV RI
Sbjct: 341 KHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRIL 400
Query: 59 PPLCFTKEDA 68
PL T EDA
Sbjct: 401 VPL--TIEDA 408
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 42.8 bits (101), Expect = 3e-06
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 6 IGDARGWGFMLGVEF-VTDSQLRKAE-TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
I D RG GFM VEF DS L AE V K + G+++ G +GNV R P+
Sbjct: 344 IADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITI 403
Query: 64 TKEDANYLVDVMDCSM 79
+ +D+++ S+
Sbjct: 404 QDDVFAEALDILEASI 419
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 42.7 bits (101), Expect = 3e-06
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 2 KYGTIGDARGWGFMLGVEFV-------------TDSQLRKAETLDVMDKMKQMGVLIGKG 48
Y +GD RG G MLGVE V + +L + + + G+++ G
Sbjct: 372 DYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASL----IQRECLRRGLILELG 427
Query: 49 GFYGNVFRIAPPLCFTKE 66
G +G+V R PPL T E
Sbjct: 428 GRHGSVVRFLPPLIITAE 445
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 42.0 bits (99), Expect = 5e-06
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 2 KYGTIGDARGWGFMLGVEFV-------------TDSQLRKAETLDVMDKMKQMGVLIGKG 48
+Y IG+ RG G M+G+E V D +L A + + G+L+ +G
Sbjct: 366 RYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAA----IQKACFENGLLLERG 421
Query: 49 GFYGNVFRIAPPLCFTKEDANYLVD 73
G GNV R+ PPL T+ + +D
Sbjct: 422 GRNGNVVRLLPPLLITQAECEEFID 446
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 42.0 bits (99), Expect = 6e-06
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLR-----KAETLDVMDKMKQMGVLIGKGGFYGNVF 55
KY IGD RG G + GVE VTD + +AE V+ + G+ GNV
Sbjct: 370 AKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEA--VLYRCLNNGLSFKVSQ--GNVI 425
Query: 56 RIAPPLCFTKEDANYLVDVMD 76
+++PPL T+E+ + +++
Sbjct: 426 QLSPPLIITREELTQALAILE 446
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 41.9 bits (99), Expect = 6e-06
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I + RG G + + V D D+ K+K+ G+L +GN+ R+APPL T+
Sbjct: 331 ITEVRGRGLLNAI--VIDESKTGRTAWDLCLKLKEKGLLAKPT--HGNIIRLAPPLVITE 386
Query: 66 EDANYLVDVM 75
E + ++++
Sbjct: 387 EQLDEGLEII 396
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 41.7 bits (99), Expect = 6e-06
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I + RG G +LG++ V ++ D++ ++ G+L G NV R+ PPL T+
Sbjct: 322 IEEVRGKGLLLGLKCVVPNR-------DLVQALRDEGLLTVGAG--DNVVRLLPPLIITE 372
Query: 66 EDAN 69
E+ +
Sbjct: 373 EEID 376
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 40.8 bits (96), Expect = 2e-05
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDK--------MKQMGVLIGKGGFYGNVFRI 57
+G+ RG G + VEFV D R D K + GV I + +G++
Sbjct: 374 VGEVRGVGMLAAVEFVADRDDRTP--FDPALKIGPQVSAAALERGV-IARAMPHGDILGF 430
Query: 58 APPLCFTKEDANYLVDV 74
APPL T+ +A+ +V +
Sbjct: 431 APPLVLTRAEADEIVAI 447
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 39.4 bits (92), Expect = 5e-05
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
+ + RG G ML VE ++ + + +K+ G+L + + R+APPL
Sbjct: 330 NIVREVRGRGLMLAVELEPEAGGARQ----YCEALKERGLLAKDT--HDHTIRLAPPLVI 383
Query: 64 TKEDANYLVD 73
T+E ++ ++
Sbjct: 384 TREQVDWALE 393
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 38.9 bits (91), Expect = 6e-05
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 18/71 (25%)
Query: 10 RGWGFMLGVEFVTDSQLRKAETLDVM-----DKMKQMGVLIGKGGFYGNVFRIAPPLCFT 64
RG G ++G++ LDV D + G+L+ G G+V R+ PPL +
Sbjct: 317 RGVGLLVGIQ------------LDVPAGPLVDACRDSGLLVLTAG-KGDVVRLVPPLVIS 363
Query: 65 KEDANYLVDVM 75
+ + V+++
Sbjct: 364 EAELEQAVEIL 374
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 38.9 bits (91), Expect = 6e-05
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRK--AETLDVMDKMKQMGVLIGKGGFY----GNV 54
+++ ++G+ RG G +E V D + R+ A M + + G GN
Sbjct: 359 ERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNR 418
Query: 55 FRIAPPLCFTKEDANYLVDVMD 76
+ PP T+++ + ++D
Sbjct: 419 IHVVPPCTVTEDEVREGLAILD 440
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 38.8 bits (90), Expect = 8e-05
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMK---------QMGVLIGKGGFYG 52
++ IG+ RG G M G+ V + Q + A D + G+L+ GG G
Sbjct: 347 EHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREG 406
Query: 53 NVFRIAPPLCFTKED 67
VFR+ P+ +E+
Sbjct: 407 EVFRLLCPITIDQEE 421
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 38.3 bits (89), Expect = 1e-04
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 5 TIGDARGWGFMLGVEFVTD-SQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
T+ RG G+M+G+E D SQL +A + G+++ G NV R+ PPL
Sbjct: 310 TVTTVRGLGYMIGIETTADLSQLVEAA--------RDKGLIVLTAG--TNVIRLLPPLTL 359
Query: 64 TKED 67
TKE+
Sbjct: 360 TKEE 363
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 37.5 bits (87), Expect = 2e-04
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRK--AE-TLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC 62
I D R G M+ VEF D Q K E T + + G+L+ G +GNV R PL
Sbjct: 344 IVDIRARGSMVAVEF-NDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPL- 401
Query: 63 FTKEDANY 70
T DA +
Sbjct: 402 -TIPDAQF 408
>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional.
Length = 459
Score = 36.6 bits (85), Expect = 5e-04
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKA---ETLDVMDKMKQM----GVLIGKGGFYGNVFRIA 58
+GD RG G + +E V D K LD D++ G++ F V A
Sbjct: 368 VGDVRGRGLLGALELVADKA-TKTPFDAALDPADRIFDRAYANGLVFR--AFGDGVLGFA 424
Query: 59 PPLCFTKED 67
P LC T+ +
Sbjct: 425 PALCCTEGE 433
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 36.3 bits (84), Expect = 5e-04
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
+GD R G M+G+E V + + ++ V + +++G+L GN P
Sbjct: 377 VGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRP---LGNTIVFMP 433
Query: 60 PLCFTKEDANYLVDVM 75
PL T ++ + ++ ++
Sbjct: 434 PLASTIDELDEMLRIL 449
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 35.8 bits (83), Expect = 7e-04
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
K + + RG G + + F S A D+ K+K+ G+L N+ R APPL
Sbjct: 321 KSPWVKEIRGKGLLNAIVF-DHSDGVNAW--DLCLKLKENGLLAKPTH--DNIIRFAPPL 375
Query: 62 CFTKEDANYLVDVM 75
TKE + ++++
Sbjct: 376 VITKEQLDQALEII 389
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 35.5 bits (82), Expect = 0.001
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I + RG G +GVE ++ + +K+ G+L + + V R APPL TK
Sbjct: 331 IKEVRGRGLFIGVELNEPAR-------PYCEALKEEGLLCKET--HETVIRFAPPLVITK 381
Query: 66 ED 67
E+
Sbjct: 382 EE 383
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 34.6 bits (80), Expect = 0.002
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 5 TIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFT 64
+ + RG G M+G+E E V++++++ G+L+ G NV R+ PPL T
Sbjct: 312 CVKNIRGKGLMIGIEC-------TEEVAPVIEQLREEGLLVLSAG--PNVIRLLPPLVVT 362
Query: 65 KED 67
KE+
Sbjct: 363 KEE 365
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 33.0 bits (76), Expect = 0.007
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I RG G M G+E K + + G++I G V ++ PPL +
Sbjct: 342 IKQVRGRGLMQGIECGDGDLAGK-----IAKAAFENGLIIETSGPNDEVIKLLPPLTIDE 396
Query: 66 ED 67
E
Sbjct: 397 ET 398
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 33.2 bits (76), Expect = 0.007
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 2 KYGT-IGDARGWGFMLGVEFVTDSQLRKAET-LDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
+Y + +ARG G ++ +EFV + E + +M + VL+ RI P
Sbjct: 376 EYPDLVQEARGKGMLMAIEFVDN------EIGYNFASEMFRQRVLVAGTLNNAKTIRIEP 429
Query: 60 PLCFTKED 67
PL T E
Sbjct: 430 PLTLTIEQ 437
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 33.0 bits (76), Expect = 0.008
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRK--AETLDV---MDKMKQMGVLIGKGGFYGNVFRIAPP 60
+G+ RG G + VE V D + V + +I + G+ PP
Sbjct: 371 VGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRA--MGDTLAFCPP 428
Query: 61 LCFTKEDANYLVDVM 75
L T + +VD
Sbjct: 429 LIITAAQVDEMVDRF 443
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 32.8 bits (76), Expect = 0.008
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
+ D R G + VE V D + + + GVL+ GNV + PP T
Sbjct: 348 VADVRVLGAIGAVELVRDVEPYIGA--KIQQFFLERGVLLRP---LGNVIYLMPPYIITD 402
Query: 66 EDANYLVDVM 75
E+ L +
Sbjct: 403 EELEKLTAAI 412
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 32.8 bits (75), Expect = 0.009
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I + RG G + V +L DV K+K+ G+L + + R+APPL ++
Sbjct: 372 IKEVRGRGLLNAVVL-NSPKLGPVSAYDVCLKLKERGLLAKPT--HDTIIRLAPPLSISE 428
Query: 66 ED----ANYLVDVMDCSMTK 81
++ + L DV++ + K
Sbjct: 429 DELQECSKALSDVLEHDLPK 448
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 32.3 bits (74), Expect = 0.013
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQM-GVLIGK---GGFY------GN-V 54
+GD RG G+ G+E V D + ET + + + G L G Y G+ V
Sbjct: 371 VGDVRGDGYFYGIELVKDKATK--ETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPV 428
Query: 55 FRIAPPLCFTKEDANYLVDVMDCSMT 80
++APPL +E+ + + ++ +T
Sbjct: 429 VQLAPPLISGQEEFDEIEQILRSVLT 454
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 31.1 bits (71), Expect = 0.036
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 6 IGDARGWGFMLGVEFVTD----SQLRKAETLDVMDKMKQM--GVLI--GKG---GFYGNV 54
+GD RG G +GVE V D + A L K + M G+++ G G G+
Sbjct: 351 VGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDH 410
Query: 55 FRIAPPLCFTKEDANYLVD 73
+APP T + +V+
Sbjct: 411 VLLAPPFIITAAQIDEIVE 429
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 30.6 bits (70), Expect = 0.044
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
+ RG G +LG+ L V ++ G L+ +V R+APPL T
Sbjct: 327 VDHVRGRGLLLGIV------LTAPVAKAVEAAAREAGFLVNAVA--PDVIRLAPPLIITD 378
Query: 66 EDANYLVD 73
+ V
Sbjct: 379 AQVDAFVA 386
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 29.9 bits (68), Expect = 0.081
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
KYG + RG G ++G E + R D ++ + GV++ G +V R AP
Sbjct: 325 QKYGVFSEIRGMGLLIGAELKPQYKGRAR---DFLNAAAEEGVMVLVAG--PDVLRFAPS 379
Query: 61 LCFTKED 67
L + D
Sbjct: 380 LVIEEAD 386
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 29.5 bits (67), Expect = 0.15
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGN-VFR-------I 57
+G+ RG G + +E V D R+ + +G + F + R I
Sbjct: 370 VGEVRGVGLVGAIELVKDKATRER-----FEAGGGVGTICRDHCFANGLIMRAVGDRMII 424
Query: 58 APPLCFTKEDANYLVDV 74
+PPL T + + LV+
Sbjct: 425 SPPLVITHAEIDELVEK 441
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 29.4 bits (66), Expect = 0.17
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
IG+ RG G +LG EFV + + + K+ G+L+ G+ ++P
Sbjct: 413 IGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLV---RVAGDNIMMSP 469
Query: 60 PLCFTKEDANYLV 72
PL T E+ + L+
Sbjct: 470 PLIITPEEVDELI 482
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 29.1 bits (65), Expect = 0.21
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
++G RG G MLG + + ++D + G+L+ + G +V R P
Sbjct: 328 AEFGVFAQVRGRGLMLGAVL---APAHAGQAGAILDLAAEHGLLLLQAG--PDVLRFVPA 382
Query: 61 LCFTKED 67
L T +
Sbjct: 383 LNLTDAE 389
>gnl|CDD|202955 pfam04272, Phospholamban, Phospholamban. The regulation of
calcium levels across the membrane of the sarcoplasmic
reticulum involves the interplay of many membrane
proteins. Phospholamban is a 52 residue integral
membrane protein that is involved in reversibly
inhibiting the Ca(2+) pump and regulating the flow of
Ca ions across the sarcoplasmic reticulum membrane
during muscle contraction and relaxation. Phospholamban
is thought to form a pentamer in the membrane.
Length = 52
Score = 27.2 bits (60), Expect = 0.24
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 15 MLGVEFVTDSQLRKAETLDVMDKMKQ 40
M V+++T S +R+A T+++ + +Q
Sbjct: 1 MEKVQYLTRSAIRRASTIEMPQQARQ 26
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 28.4 bits (64), Expect = 0.35
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
+ + RG G M + + R V+ ++ + GVL+ G FR P L
Sbjct: 371 AVVSNVRGRGLMCAFDL-PTTADRDE----VIRRLWEEGVLVLPCGERSIRFR--PALTV 423
Query: 64 TKEDANYLVDVMD 76
T E+ + +D +
Sbjct: 424 TTEEIDAAIDALR 436
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 28.1 bits (62), Expect = 0.42
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 10 RGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKE 66
RG G M+ EF D Q + A + + G+L+ G YGNV R PL T
Sbjct: 348 RGLGSMIAAEF-NDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPL--TIP 404
Query: 67 DANY 70
DA +
Sbjct: 405 DAQF 408
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 27.7 bits (61), Expect = 0.54
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I +ARG G ++ +EF D+++ A ++ Q +L+ RI PPL T
Sbjct: 374 IIEARGKGLLMAIEFR-DNEIGYA----FAKELFQQNILVAGTLNNAKSIRIEPPLTITI 428
Query: 66 E 66
E
Sbjct: 429 E 429
>gnl|CDD|200091 TIGR01294, P_lamban, phospholamban. This model represents the
short (52 residue) transmembrane phosphoprotein
phospholamban. Phospholamban, in its unphosphorylated
form, inhibits SERCA2, the cardiac sarcoplasmic
reticulum Ca-ATPase.
Length = 52
Score = 26.0 bits (57), Expect = 0.73
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 15 MLGVEFVTDSQLRKAETLDVMDKMKQ 40
M V+++T S +R+A T+++ + +Q
Sbjct: 1 MEKVQYLTRSAIRRASTIEMPQQARQ 26
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division
control protein 7-like Protein Serine/Threonine
Kinases. Serine/threonine kinases (STKs), (Cdc7)-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Cdc7-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
include Schizosaccharomyces pombe Cdc7, Saccharomyces
cerevisiae Cdc15, Arabidopsis thaliana
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) epsilon, and related proteins. MAPKKKs
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
Fission yeast Cdc7 is essential for cell division by
playing a key role in the initiation of septum
formation and cytokinesis. Budding yeast Cdc15
functions to coordinate mitotic exit with cytokinesis.
Arabidopsis MAPKKK epsilon is required for pollen
development in the plasma membrane.
Length = 254
Score = 26.8 bits (60), Expect = 0.95
Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 40 QMGVLIGKGGFYGNVFR 56
Q+G LIG+G F G V++
Sbjct: 3 QLGDLIGRGAF-GVVYK 18
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 26.6 bits (59), Expect = 1.2
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKA------ETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
+ + R G +L +E V D + L V + G L+ G+V P
Sbjct: 368 VAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRP---LGSVVYFLP 424
Query: 60 PLCFTKEDANYLVDVM 75
P T E ++L +V
Sbjct: 425 PYVITPEQIDFLAEVA 440
>gnl|CDD|212000 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol cyclase. This
enzyme, also called squalene--tetrahymanol cyclase,
occurs a small number of eukaryotes, some of them
anaerobic. The pathway can occur under anaerobic
conditions, and the product is thought to replace
sterols, letting organisms with this compound build
membrane suitable for performing phagocytosis.
Length = 624
Score = 26.5 bits (58), Expect = 1.7
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC 62
+G++ D R W +L + +S K + +++ M + G+ G YG F AP
Sbjct: 306 HGSLDDGRWWDTILISWAMLESGEDKEKIFPIVENMLKEGLQPKGGIEYGYDFEYAP--- 362
Query: 63 FTKEDANYLVDVM 75
+D L+ V+
Sbjct: 363 -DADDTGLLLQVL 374
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 26.5 bits (59), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 6 IGDARGWGFMLGVEFV 21
IGD RG G M+ +E V
Sbjct: 322 IGDVRGKGLMIAIEIV 337
>gnl|CDD|239089 cd02396, PCBP_like_KH, K homology RNA-binding domain, PCBP_like.
Members of this group possess KH domains in a tandem
arrangement. Most members, similar to the poly(C)
binding proteins (PCBPs) and Nova, containing three KH
domains, with the first and second domains, which are
represented here, in tandem arrangement, followed by a
large spacer region, with the third domain near the
C-terminal end of the protein. The poly(C) binding
proteins (PCBPs) can be divided into two groups, hnRNPs
K/J and the alphaCPs, which share a triple KH domain
configuration and poly(C) binding specificity. They
play roles in mRNA stabilization, translational
activation, and translational silencing. Nova-1 and
Nova-2 are nuclear RNA-binding proteins that regulate
splicing. This group also contains plant proteins that
seem to have two tandem repeat arrrangements, like
Hen4, a protein that plays a role in AGAMOUS (AG)
pre-mRNA processing and important step in plant
development. In general, KH binds single-stranded RNA
or DNA. It is found in a wide variety of proteins
including ribosomal proteins, transcription factors and
post-transcriptional modifiers of mRNA.
Length = 65
Score = 25.1 bits (56), Expect = 1.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 39 KQMGVLIGKGG 49
Q G +IGKGG
Sbjct: 9 SQAGSIIGKGG 19
>gnl|CDD|188566 TIGR04051, rSAM_NirJ, heme d1 biosynthesis radical SAM protein
NirJ. Heme d1 occurs in the cytochrome cd1 subunit of
nitrite reductase in species such as Pseudomonas
stutzeri. NirJ is a radical SAM protein involved in its
bioynthesis. In a number of species, distinct genes
NirJ1 and NirJ2 are found in similar genomic regions;
this model describe authentic NirJ from genomes with
NirJ only [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 354
Score = 26.2 bits (58), Expect = 2.3
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 25 QLRKAETLDVMDKMKQMGV--LIGKGG---FYGNVFRIA 58
+L AE L V+D +K GV LI GG ++F IA
Sbjct: 31 ELSTAEVLRVIDDLKAFGVPALILSGGEPLLRPDIFEIA 69
>gnl|CDD|224328 COG1410, MetH, Methionine synthase I, cobalamin-binding domain
[Amino acid transport and metabolism].
Length = 842
Score = 25.8 bits (57), Expect = 2.6
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 17 GVEFVTDSQLRKAETLDV-----MDKMKQMGVLIGKG 48
G+E + ++ L+V MD MK +G L G G
Sbjct: 338 GLEEDLEEARQQKPPLEVIEGPLMDGMKVVGDLFGSG 374
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 25.1 bits (56), Expect = 3.9
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 4 GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCF 63
G + RG G M G++F D +L + + + G++I G V ++ PPL
Sbjct: 344 GLGAEVRGRGMMQGIDFG-DGELAGK----IAAEAFENGLIIETSGPEDEVVKLLPPLTI 398
Query: 64 TKED 67
+E+
Sbjct: 399 DEEE 402
>gnl|CDD|184576 PRK14223, PRK14223, camphor resistance protein CrcB; Provisional.
Length = 122
Score = 24.3 bits (53), Expect = 6.4
Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 38 MKQMGVLIGKGGFYGNVFR 56
M+++ +LIG GGF+G + R
Sbjct: 1 MREL-LLIGIGGFFGAILR 18
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 24.8 bits (55), Expect = 6.9
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 52 GNVFRIAPPLCFTKEDANYLVDVMD 76
GN + PP T E+ + + D +
Sbjct: 393 GNTIYLMPPYIITAEELDRITDAIV 417
>gnl|CDD|203707 pfam07650, KH_2, KH domain.
Length = 77
Score = 24.0 bits (53), Expect = 7.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 40 QMGVLIGKGG 49
Q G++IGKGG
Sbjct: 35 QPGIVIGKGG 44
>gnl|CDD|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated.
Length = 687
Score = 24.4 bits (54), Expect = 8.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 26 LRKAETLDVMD 36
L+K E++DVMD
Sbjct: 216 LKKTESIDVMD 226
>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 24.4 bits (54), Expect = 9.0
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 51 YGNVFRIAPPLCFTKEDANYLVD-----VMDC 77
Y +++ PPL T+ED L++ +D
Sbjct: 270 YDPNYKVNPPLR-TEEDREALIEGLKDGTIDA 300
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 24.3 bits (53), Expect = 9.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 16 LGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKG 48
LGV+F TD + K T++ +++ G+ I G
Sbjct: 494 LGVKFETDVIVGKTITIEELEEEGFKGIFIASG 526
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.142 0.435
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,138,490
Number of extensions: 319919
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 71
Length of query: 82
Length of database: 10,937,602
Length adjustment: 51
Effective length of query: 31
Effective length of database: 8,675,548
Effective search space: 268941988
Effective search space used: 268941988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)