RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 042283
(82 letters)
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 96.5 bits (241), Expect = 1e-25
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
++ IGD RG G G+E V D Q R+ AET ++ + Q+G+++ G GNV
Sbjct: 341 KRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEF 400
Query: 58 APPLCFTKEDANYLVDVMDCSMTK 81
PPL T+ D + +D++D + ++
Sbjct: 401 TPPLTITETDIHKALDLLDRAFSE 424
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 94.2 bits (235), Expect = 8e-25
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLR---KAETLDVMDKMKQMGVLIG--KGGFYGNVF 55
+++ IGD RG G +LGVE V D + + + + +G+ + + G VF
Sbjct: 346 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVF 405
Query: 56 RIAPPLCFTKEDANYLVDVMDCSMTK 81
RIAPPL ++++ + + ++ ++ +
Sbjct: 406 RIAPPLTVSEDEIDLGLSLLGQAIER 431
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 79.9 bits (198), Expect = 1e-19
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIGKGGFYGNVFRI 57
+K+ IGD RG G M+ +E D K T +++ + + G+++ G Y NV RI
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 399
Query: 58 APPLCFTKEDANYLVDVMD 76
PL ++++
Sbjct: 400 LVPLTIEDAQIRQGLEIIS 418
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 79.9 bits (198), Expect = 1e-19
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
+ IGD RG G M+ +E V T + GV++ G YGNV R
Sbjct: 368 AEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFL 427
Query: 59 PPLCFTKEDANYLVDVMD 76
PPL + N +DV++
Sbjct: 428 PPLSIGDDLLNEGLDVLE 445
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 78.0 bits (193), Expect = 6e-19
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLR--KAETLDVMDKMKQMGVLIGKGGFYGNVFRIA 58
++ IG+ RG G ML +E V L A T + + GVLI G +GNV R+
Sbjct: 366 EEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLL 425
Query: 59 PPLCFTKEDANYLVDVMD 76
PPL + + + +
Sbjct: 426 PPLVIGDDLLDEGITALS 443
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 66.9 bits (164), Expect = 5e-15
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 1 DKY-GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
+Y I RG G + D +R ++ + GV++G G R P
Sbjct: 396 ARYPQFISRVRGRGTFCSFDTP-DESIRNK----LISIARNKGVMLGGCG--DKSIRFRP 448
Query: 60 PLCFTKEDANYLVDVMD 76
L F A+ +++
Sbjct: 449 TLVFRDHHAHLFLNIFS 465
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 65.7 bits (161), Expect = 1e-14
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRK----AETLDVMDKMKQMGVLIGKGG----FYGNVFRI 57
+GD RG G ++G+E V D + ++ + V++ K+ G++IG+ G Y N+ +
Sbjct: 368 VGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTL 427
Query: 58 APPLCFTKEDANYLVDVMDCSMTK 81
APPL + E+ +++ + +M +
Sbjct: 428 APPLVISSEEIAFVIGTLKTAMER 451
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 63.8 bits (156), Expect = 6e-14
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 1 DKY-GTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAP 59
+ + D RG G M + R +++ ++ Q V++ G + R P
Sbjct: 373 ADFPAVVLDPRGRGLMCAFSLP-TTADRD----ELIRQLWQRAVIVLPAG--ADTVRFRP 425
Query: 60 PLCFTKEDANYLVDVMDCSMTK 81
PL + + + + + ++
Sbjct: 426 PLTVSTAEIDAAIAAVRSALPV 447
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 61.8 bits (151), Expect = 3e-13
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
D RG G G+E+ ++ + + G+L+ G + R+ PPL ++
Sbjct: 349 ADDVRGIGLAWGLEYNEK-----KVRDRIIGESFKRGLLLLPAG--RSAIRVIPPLVISE 401
Query: 66 EDANYLVDVMD 76
E+A +D++
Sbjct: 402 EEAKQGLDILK 412
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 59.5 bits (145), Expect = 2e-12
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
+++ D RG G ++G E + R D + + GV++ G +V R AP
Sbjct: 342 EQFDIFSDIRGMGLLIGAELKPKYKGRAR---DFLYAGAEAGVMVLNAG--ADVMRFAPS 396
Query: 61 LCFTKEDANYLVDVMDCSMTK 81
L + D + + ++ K
Sbjct: 397 LVVEEADIHEGMQRFAQAVGK 417
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 58.7 bits (143), Expect = 3e-12
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
+ D R +G ++ + + + G + F G+ + P
Sbjct: 374 VIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYV---RFGGDTLQFGPTFNSKP 430
Query: 66 EDANYLVDVMDCSMTK 81
+D + L D + + K
Sbjct: 431 QDLDRLFDAVGEVLNK 446
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 57.5 bits (140), Expect = 8e-12
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
++Y + D RG G M+G++F + R +V K + +L+ G N R PP
Sbjct: 323 EEYDVVADVRGMGLMIGIQFREEVSNR-----EVATKCFENKLLVVPAG--NNTIRFLPP 375
Query: 61 LCFTKEDANYLVDVMD 76
L + + V+ +
Sbjct: 376 LTVEYGEIDLAVETLK 391
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 57.5 bits (140), Expect = 1e-11
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
+++ +G GFM G+ ++ V+ K ++ +L+ G N R PP
Sbjct: 321 NEFDFCKKRKGLGFMQGLSLDKSVKVA-----KVIQKCQENALLLISCG--ENDLRFLPP 373
Query: 61 LCFTKEDANYLVDVMD 76
L KE + + + +
Sbjct: 374 LILQKEHIDEMSEKLR 389
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 56.5 bits (137), Expect = 2e-11
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
+G+ RG G + VEFV D R V + GV+ + G++ AP
Sbjct: 375 VGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIG-RAMPQGDILGFAP 433
Query: 60 PLCFTKEDANYLVDVMDCSMTK 81
PLC T+E A+ +V ++
Sbjct: 434 PLCLTREQADIVVSKTADAVKS 455
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 56.1 bits (136), Expect = 4e-11
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLD--------VMDKMKQMGVLIGKGGFYGNVFRI 57
IG+ RG GFM +E V D + D + + +G++ G +
Sbjct: 383 IGEYRGIGFMWALEAVKDKASK--TPFDGNLSVSERIANTCTDLGLICRP---LGQSVVL 437
Query: 58 APPLCFTKEDANYLVDVMDCSMTK 81
PP T+ + + D ++ ++ K
Sbjct: 438 CPPFILTEAQMDEMFDKLEKALDK 461
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 54.9 bits (133), Expect = 9e-11
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
+ D RG G + +EF + LD+ K+K+ G++ R+ PP
Sbjct: 354 KDSKIVRDVRGKGLLCAIEFKNE----LVNVLDICLKLKENGLITRDVH--DKTIRLTPP 407
Query: 61 LCFTKEDANYLVDVMD 76
LC TKE + +++
Sbjct: 408 LCITKEQLDECTEIIV 423
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 54.9 bits (133), Expect = 9e-11
Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
+ + R G + V+ + D D + ++ ++G+++ G++ I+P
Sbjct: 375 VAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIV---RPLGDLCVISP 431
Query: 60 PLCFTKEDANYLVDVMDCSMTK 81
PL ++ + +V +M ++T+
Sbjct: 432 PLIISRAQIDEMVAIMRQAITE 453
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 53.4 bits (129), Expect = 3e-10
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLD-------VMDKMKQMGVLIGKGGFYGNVFRIA 58
+G+A+ G M + + R + ++ +++ G+ I+
Sbjct: 372 VGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIM---RHVGDRMIIS 428
Query: 59 PPLCFTKEDANYLVDVMDCSMTK 81
PPL T + + + + S+ +
Sbjct: 429 PPLVITPAEIDEMFVRIRKSLDE 451
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 53.4 bits (129), Expect = 3e-10
Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
+ RG G + + + +++ A V +++ G+L G++ R APPL
Sbjct: 364 PSDVVTAVRGKGLLNAIV-IKETKDWDAW--KVCLRLRDNGLLAKPTH--GDIIRFAPPL 418
Query: 62 CFTKEDANYLVDVMD 76
+++ +++++
Sbjct: 419 VIKEDELRESIEIIN 433
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 52.2 bits (126), Expect = 7e-10
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
+ D RG G + V + R+ D + +++ G+ AP
Sbjct: 370 VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIM---RACGDHIVSAP 426
Query: 60 PLCFTKEDANYLVDVMDCSMTK 81
PL T+ + + ++ V + + +
Sbjct: 427 PLVMTRAEVDEMLAVAERCLEE 448
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 51.4 bits (124), Expect = 1e-09
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I + RG G +G+E ++ +++K G+L + NV RIAPPL ++
Sbjct: 327 ITEVRGKGLFIGIELNEPAR-------PYCEQLKAAGLLCKETH--ENVIRIAPPLVISE 377
Query: 66 EDANYLVDVMD 76
ED + +
Sbjct: 378 EDLEWAFQKIK 388
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 51.3 bits (124), Expect = 2e-09
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKED 67
+G G MLG+E + + D + K + G+LI G V R PPL KE
Sbjct: 313 KVKGRGLMLGLELERECK-------DYVLKALEKGLLINCTA--GKVLRFLPPLIIQKEH 363
Query: 68 ANYLVDVMD 76
+ + V+
Sbjct: 364 IDRAISVLR 372
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 49.8 bits (120), Expect = 6e-09
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I + RG G M+G+E L++ + K+ VL + G V R PPL K
Sbjct: 329 IREVRGMGLMVGLE------LKEKAAPYIARLEKEHRVLALQAG--PTVIRFLPPLVIEK 380
Query: 66 EDANYLVDVMD 76
ED +V+ +
Sbjct: 381 EDLERVVEAVR 391
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 49.5 bits (119), Expect = 8e-09
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRK-----AETLDVMDKMKQMGVLI-----GKGGFYGNVF 55
+ RG G +LGV + D + + + G++ + G+
Sbjct: 343 MMQVRGTGLLLGVV-LGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHL 401
Query: 56 RIAPPLCFTKEDANYLVDVMDCSMT 80
+ PPL T + + L+ ++ ++
Sbjct: 402 LLGPPLSITAAEVDGLLALLAGALE 426
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 41.8 bits (99), Expect = 4e-06
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLD------VMDKMKQMGVLIGKGGFYGNVFRIAP 59
+GD R GFM G E V + ++ D V KM+++G+L G+V P
Sbjct: 364 VGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRP---LGDVIAFLP 420
Query: 60 PLCFTKEDANYLVDVM 75
PL T E+ + +V +M
Sbjct: 421 PLASTAEELSEMVAIM 436
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 37.2 bits (86), Expect = 2e-04
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAET---LDVMDKMKQMGVLIGKGGFYGNVFRIAPPLC 62
+ G + +E D+ + ++ +++ G+ GNV + C
Sbjct: 752 VQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTR---PLGNVIYLMCGPC 808
Query: 63 FTKEDANYLVDVM 75
+ E L+ +
Sbjct: 809 TSPEICRRLLTKL 821
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 33.7 bits (78), Expect = 0.003
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
+ D R G + VE + + + GV I +G + + PP
Sbjct: 356 VADVRVLGAIGVVETTHPVNMAA-----LQKFFVEQGVWIRP---FGKLIYLMPPYIILP 407
Query: 66 EDANYLVDVM 75
+ L +
Sbjct: 408 QQLQRLTAAV 417
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
+ D R G + +E L A GV + + N+ PP T
Sbjct: 385 VTDVRVCGAIGVIECDRPVDLAVA-----TPAALDRGVWLR---PFRNLVYAMPPYICTP 436
Query: 66 EDANYLVDVM 75
+ + M
Sbjct: 437 AEITQITSAM 446
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 103
Score = 26.8 bits (60), Expect = 0.46
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 7 GDARGWGFMLGVEFVTDSQLRKAETLD 33
+G+ + VEF L++A T D
Sbjct: 53 DKFKGFCY---VEFDEVDSLKEALTYD 76
>3qta_A Chemotaxis protein CHEC; CHEC-like, 3-layer(ABA) sandwich,
structural genomics, joint for structural genomics,
JCSG; HET: MSE; 2.00A {Haloarcula marismortui}
Length = 233
Score = 26.4 bits (58), Expect = 0.82
Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 11/59 (18%)
Query: 18 VEFVTDSQLRKAETLDVMDKMKQMGVLIG-KGGFYGNVFRIAPPLCFTKEDANYLVDVM 75
+ FV + M + YG + F E A + ++M
Sbjct: 44 LSFVQPEDIA-----TEMGGGTIYSARVRLTEPPYGVFL-----MTFETETAAEIAELM 92
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 25.9 bits (57), Expect = 1.1
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 7 GDARGWGFMLGVEFVTDSQLRKAETLD 33
G G V+F + RK+E L
Sbjct: 54 GQGLGQAL---VQFKNEDDARKSERLH 77
>1ny7_1 Cowpea mosaic virus, small (S) subunit; comovirus, viral coat
protein, cowpea mosaic virus (CPMV), icosahedral virus;
3.00A {Cowpea mosaic virus} SCOP: b.121.4.2 PDB: 2bfu_S
Length = 189
Score = 25.9 bits (56), Expect = 1.6
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 42 GVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMDCSMTKK 82
V Y + P + D+++ +T
Sbjct: 2 PVCAEASDVYSPCMIASTPPAPFSDVTAVTFDLINGKITPV 42
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli}
SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Length = 332
Score = 25.8 bits (57), Expect = 1.9
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 43 VLIGKGGFYGNVFRIAP 59
+ IG G G ++ P
Sbjct: 221 IGIGNGRQAGGGQQLCP 237
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo
sapiens}
Length = 343
Score = 25.4 bits (56), Expect = 2.0
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 30 ETLDVMDKMKQMGVLIGKGGFYGNVFR 56
E + V ++ + IG GG VF+
Sbjct: 2 ECISVKGRIYSILKQIGSGGS-SKVFQ 27
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 25.5 bits (56), Expect = 2.4
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 24 SQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFR 56
+ E + V ++ + IG GG VF+
Sbjct: 43 ASSSANECISVKGRIYSILKQIGSGGS-SKVFQ 74
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: d.58.7.1
Length = 124
Score = 25.2 bits (55), Expect = 2.4
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLD 33
YG G A G GF VEF ++ + A
Sbjct: 60 YGPNGKATGEGF---VEFRNEADYKAALCRH 87
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 25.2 bits (56), Expect = 2.6
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 33 DVMDKMKQMGVLIGKGG-FYGNVFRIA 58
+ ++K+ G +I G + FRI
Sbjct: 315 EFYRRLKEQGFVIYPGKVSQSDCFRIG 341
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK,
phosphotyros picked threonine kinase, SGC, structural
genomics consortiu binding; HET: 7PE; 2.30A {Homo
sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A*
3hmo_A*
Length = 313
Score = 25.0 bits (55), Expect = 3.6
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 24 SQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFR 56
++ +++ V ++ + IG GG VF+
Sbjct: 15 TENLYFQSMSVKGRIYSILKQIGSGGS-SKVFQ 46
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 91
Score = 24.2 bits (53), Expect = 3.8
Identities = 6/27 (22%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 7 GDARGWGFMLGVEFVTDSQLRKAETLD 33
G+ G+ F V+F + ++++A +
Sbjct: 47 GNKTGYIF---VDFSNEEEVKQALKCN 70
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 24.2 bits (53), Expect = 5.2
Identities = 6/17 (35%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 40 QMGVLIGKGGFYGNVFR 56
V++GKG + G V+
Sbjct: 25 GDRVVLGKGTY-GIVYA 40
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain,
nucleolus, structural protein; NMR {Mesocricetus
auratus} SCOP: d.58.7.1
Length = 101
Score = 23.8 bits (52), Expect = 6.4
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 13/42 (30%)
Query: 2 KYGTIGDA----------RGWGFMLGVEFVTDSQLRKAETLD 33
+ D R +G+ V+F + L KA L
Sbjct: 40 ELFAKNDLAVVDVRTGTNRKFGY---VDFESAEDLEKALELT 78
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 23.9 bits (52), Expect = 6.8
Identities = 2/17 (11%), Positives = 5/17 (29%)
Query: 43 VLIGKGGFYGNVFRIAP 59
+G ++ P
Sbjct: 216 FFLGLTNSMAGFEKLVP 232
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET:
DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Length = 174
Score = 24.1 bits (52), Expect = 7.0
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 39 KQMGVLIGKGG 49
+G++IG+ G
Sbjct: 12 FAVGIVIGRNG 22
>3s40_A Diacylglycerol kinase; structural genomics, the center for
structural genomics of infectious diseases, csgid,
transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Length = 304
Score = 23.8 bits (52), Expect = 7.6
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 43 VLIGKGGFYGNVFRIAP 59
V++G G + G + P
Sbjct: 199 VMVGNGEYLGGIPSFIP 215
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex,
layered beta- sheets, transferas; HET: SEP TPO; 3.20A
{Solanum pimpinellifolium} PDB: 3hgk_A*
Length = 321
Score = 23.7 bits (52), Expect = 9.0
Identities = 7/13 (53%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 44 LIGKGGFYGNVFR 56
LIG G F G V++
Sbjct: 46 LIGHGVF-GKVYK 57
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA
recognition motif, G-tract, G-quadruplex, alternative
splicing, RNA binding protein; NMR {Homo sapiens} PDB:
2kg0_A
Length = 126
Score = 23.3 bits (50), Expect = 9.4
Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 3/31 (9%)
Query: 3 YGTIGDARGWGFMLGVEFVTDSQLRKAETLD 33
G G F V+F + KA
Sbjct: 77 VDPEGKITGEAF---VQFASQELAEKALGKH 104
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 23.7 bits (52), Expect = 10.0
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 38 MKQMGVLI--GKGGFYGNVFRIA 58
+ G+ I G +FR+
Sbjct: 328 KDEYGIWICPNGGEMKDTIFRVG 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.435
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,280,346
Number of extensions: 62904
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 51
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)