RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 042283
(82 letters)
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 71.8 bits (175), Expect = 4e-17
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAE---TLDVMDKMKQMGVLIGKGGFYGNVFRI 57
+K+ IGD RG G M+ +E D K + T +++ + + G+++ G Y NV RI
Sbjct: 339 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRI 398
Query: 58 APPLCFTKEDANYLVDVMD 76
PL ++++
Sbjct: 399 LVPLTIEDAQIRQGLEIIS 417
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 68.3 bits (166), Expect = 7e-16
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPP 60
+ D RG G + +EF + LD+ K+K+ G++ + R+ PP
Sbjct: 328 KDSKIVRDVRGKGLLCAIEFKNE----LVNVLDICLKLKENGLITR--DVHDKTIRLTPP 381
Query: 61 LCFTKEDANYLVDVMD 76
LC TKE + +++
Sbjct: 382 LCITKEQLDECTEIIV 397
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 64.8 bits (157), Expect = 9e-15
Identities = 12/75 (16%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
+ RG G + + + + V +++ G+L +G++ R APPL
Sbjct: 329 PSDVVTAVRGKGLLNAIVIKET---KDWDAWKVCLRLRDNGLLAK--PTHGDIIRFAPPL 383
Query: 62 CFTKEDANYLVDVMD 76
+++ +++++
Sbjct: 384 VIKEDELRESIEIIN 398
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 64.3 bits (155), Expect = 2e-14
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I RG G + +S K ++ + GV++G G R P L F
Sbjct: 392 ISRVRGRGTFCSFDTPDESIRNK-----LISIARNKGVMLGGCG--DKSIRFRPTLVFRD 444
Query: 66 EDANYLVDVMD 76
A+ +++
Sbjct: 445 HHAHLFLNIFS 455
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 62.8 bits (151), Expect = 5e-14
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 1 DKYGTIGDARGWGFMLGVEFVTDSQLRK---AETLDVMDKMKQMGVLIG--KGGFYGNVF 55
+++ IGD RG G +LGVE V D + ++ + + +G+ + + G VF
Sbjct: 344 ERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVF 403
Query: 56 RIAPPLCFTKEDANYLVDVMD 76
RIAPPL ++++ + + ++
Sbjct: 404 RIAPPLTVSEDEIDLGLSLLG 424
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 61.3 bits (148), Expect = 2e-13
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTK 65
I + RG G M+G+E + + K+ VL + G V R PPL K
Sbjct: 321 IREVRGMGLMVGLELKEKA------APYIARLEKEHRVLALQAG--PTVIRFLPPLVIEK 372
Query: 66 EDANYLVDVMD 76
ED +V+ +
Sbjct: 373 EDLERVVEAVR 383
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 57.7 bits (138), Expect = 3e-12
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 8/75 (10%)
Query: 2 KYGTIGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPL 61
+ D R G + VE + + + GV I +G + + PP
Sbjct: 352 DAEMVADVRVLGAIGVVETTHPVNMAA-----LQKFFVEQGVWIR---PFGKLIYLMPPY 403
Query: 62 CFTKEDANYLVDVMD 76
+ L ++
Sbjct: 404 IILPQQLQRLTAAVN 418
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 37.9 bits (87), Expect = 3e-05
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 5 TIGDARG-WGFMLGVEFVTDSQLRKAETLDVMDK----MKQMGVLIGKGGFYGNVFRIAP 59
G G +GF V + + K L + M + G+ + F
Sbjct: 349 CGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE----AGFT 404
Query: 60 PLCFTKEDANYLVDVMDCSMTK 81
L T+ED + + M+
Sbjct: 405 SLAHTEEDIDATLAAARTVMSA 426
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 36.0 bits (81), Expect = 2e-04
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75
++D + + G + NV R T ED ++L++ +
Sbjct: 299 AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV 341
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 31.7 bits (70), Expect = 0.005
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 28 KAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD 76
K ++ ++ GVL R+ ++ D +++ +
Sbjct: 290 KVNAHGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFE 336
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
{Salmonella typhimurium [TaxId: 90371]}
Length = 361
Score = 29.4 bits (64), Expect = 0.033
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 33 DVMDKMKQMGVLIGKGGFY-GNVFRIAPPLCFTKEDANYLVDVMDCSM 79
+ ++K+ G +I G + FRI D L+ + +M
Sbjct: 311 EFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM 358
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp.
[TaxId: 1143]}
Length = 381
Score = 28.0 bits (60), Expect = 0.13
Identities = 5/43 (11%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVM 75
++ K+++ + + + R +E+ N+L+ +
Sbjct: 335 AIVQKLEEQRIYLRTIA-DPDCIRACCHYITDEEEINHLLARL 376
>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT
{Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
Length = 361
Score = 27.7 bits (60), Expect = 0.14
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 33 DVMDKMKQMGVLIGKGGFYGNV--FRIAPPLCFTKEDANYLVDVMD 76
+ + +Q G + KG + +V R + E LV M+
Sbjct: 311 EFVKASEQEGFVGLKG--HRSVGGLRASIYNAVPYESCEALVQFME 354
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 27.2 bits (59), Expect = 0.21
Identities = 8/69 (11%), Positives = 20/69 (28%)
Query: 8 DARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKED 67
G ML V+ ++ + + G + + A + +D
Sbjct: 365 AVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQD 424
Query: 68 ANYLVDVMD 76
+ + +D
Sbjct: 425 VDLFIKRLD 433
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate
aminotransferase {Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 25.7 bits (55), Expect = 0.77
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 33 DVMDKMKQMGVLI--GKGGFYGNVFRIA 58
V + Q G +I G+G G VFR++
Sbjct: 296 RVKEAFAQRGAVIAGGQGPLKGKVFRLS 323
>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
{Bacillus alcalophilus [TaxId: 1445]}
Length = 360
Score = 25.4 bits (54), Expect = 0.86
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 33 DVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDANYLVDVMD 76
+ K K+ G + G R + + L ++M
Sbjct: 311 QFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMI 354
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 25.3 bits (53), Expect = 1.2
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 16 LGVEFVTDSQ-------LRKAETLDVMDKMKQMGVLIGKGGFYGNVFRIAPPLCFTKEDA 68
G+ S L ++ + V K G + R+ +++
Sbjct: 273 CGIRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDG--TCIMRLCTSWATEEKEC 330
Query: 69 NYLVDVM 75
+ V+V+
Sbjct: 331 HRFVEVL 337
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus
subtilis [TaxId: 1423]}
Length = 226
Score = 24.8 bits (53), Expect = 1.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 15 MLGVEFVTDSQLRKAETLDVMDKMKQMGV 43
+L V F+ S KA+ + V+ K + G
Sbjct: 16 LLSVYFIMGSNNTKADPVTVVQKALKGGA 44
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 24.5 bits (52), Expect = 1.8
Identities = 4/25 (16%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 53 NVFRIA-PPLCFTKEDANYLVDVMD 76
R+ +T + +Y+ D +
Sbjct: 410 EFMRLTIARRVYTNDHMDYIADALI 434
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase
2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 24.3 bits (52), Expect = 2.5
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 34 VMDKMKQMGVLIGKGGFYGNVFR 56
++D K ++G G G V +
Sbjct: 9 IIDDYKVTSQVLGLGIN-GKVLQ 30
>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 261
Score = 23.0 bits (48), Expect = 6.6
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 8/47 (17%)
Query: 6 IGDARGWGFMLGVEFVTDSQLRKAETLDVMDKMKQMGVLIGKGGFYG 52
AR G L E + E + + G +G +
Sbjct: 195 SLLARKIGAALLYEDI--------EANFQLQYAWRNGGRYFQGYYLV 233
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 22.9 bits (48), Expect = 6.7
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 21 VTDSQLRKAETLDVMDKMKQMGVLIGKGGFYGN-----VFRIAPPLCFTKEDANYLVDVM 75
+ D + D+ ++++ G + G V RI F + A L++
Sbjct: 380 LKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDY 439
>d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 22.5 bits (47), Expect = 7.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 1 DKYGTIGDARGWGFMLGVE 19
+ G+ GWG M+G E
Sbjct: 18 NPDGSESGCGGWGHMMGDE 36
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Escherichia coli [TaxId: 562]}
Length = 405
Score = 22.6 bits (47), Expect = 8.1
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 26 LRKAETLDVMDKMKQMGVLIGKGGFY----------GNVFRIAPPLCFTKEDANYLVDVM 75
L K DV + G+ + G + R + + T E+ + LV +
Sbjct: 338 LGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGL 397
Query: 76 D 76
Sbjct: 398 Q 398
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea)
[TaxId: 3818]}
Length = 294
Score = 22.4 bits (47), Expect = 8.6
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 19 EFVTDSQLRKAETLDVMDKMKQMGVLIGKGG 49
+ ++ + + M KM + L G G
Sbjct: 254 AYSNNAATFNTDFGNAMIKMGNLSPLTGTSG 284
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.142 0.435
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,161
Number of extensions: 11331
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 26
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)