BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042284
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GOY|A Chain A, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|B Chain B, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|C Chain C, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|D Chain D, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|E Chain E, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|F Chain F, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|G Chain G, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|H Chain H, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
Length = 275
Score = 295 bits (754), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 179/243 (73%), Gaps = 3/243 (1%)
Query: 48 DYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTG 107
D LA + SP +I+ AF+ FG+++ I+FSGAEDVVL++ A R +VFSLDTG
Sbjct: 29 DLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTG 88
Query: 108 RLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPL 167
RL+PET++F D V +HYGI I+ P+ ++ LV+ KGLFSFY DGH ECC IRK+ PL
Sbjct: 89 RLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPL 148
Query: 168 KRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIW 227
KR L G+RAW TGQR+DQSPGTR+++ V++ID +F + L K+NPL+++ +++W
Sbjct: 149 KRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAF---STPEKPLYKFNPLSSMTSEEVW 205
Query: 228 NFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHNGNIKQ 287
++R + +P NSLH +GYISIGCEPCTRPVLP QHEREGRWWWE+A KECGLH GN+
Sbjct: 206 GYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNLIS 265
Query: 288 EEL 290
+ L
Sbjct: 266 KAL 268
>pdb|2OQ2|A Chain A, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|B Chain B, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|C Chain C, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|D Chain D, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
Length = 261
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 22/235 (9%)
Query: 60 SPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEY-AKLTGRPF--RVFSLDTGRLNPETHQF 116
+P EI+ + F + G +V I+ +KL+ + + + +DT P+T
Sbjct: 29 TPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTL 88
Query: 117 FDTVEKHY----GIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK 172
+ +EK Y I P+ E +A +K +E + + KV P RA K
Sbjct: 89 KNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYK 148
Query: 173 GLR--AWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFL 230
L A TG+RK Q R+++ +++ID GI +K NPL N + + ++
Sbjct: 149 ELHISAVFTGRRKSQGSA-RSQLSIIEID-ELNGI-------LKINPLINWTFEQVKQYI 199
Query: 231 RAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK-ECGLHNGN 284
A N+P N L GY SIG T+PV G+ ER GRW KAK ECG+H +
Sbjct: 200 DANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRW---KGKAKTECGIHEAS 251
>pdb|2O8V|A Chain A, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 252
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 101 VFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCR 160
V DTG L PET++F D + + ++ R L+ +G ++
Sbjct: 74 VILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYND 133
Query: 161 IRKVRPLKRALKGLRA--WITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPL 218
I KV P+ RALK L A W G R++QS G+RA +PV+ I + + K P+
Sbjct: 134 INKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVLAI----------QRGVFKVLPI 182
Query: 219 ANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGR 267
+ + I+ +L+ + + L +GY+S+G TR PG E E R
Sbjct: 183 IDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETR 231
>pdb|1SUR|A Chain A, Phospho-Adenylyl-Sulfate Reductase
Length = 215
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 101 VFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCR 160
V DTG L PET++F D + + ++ R L+ +G ++
Sbjct: 73 VILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYND 132
Query: 161 IRKVRPLKRALKGLRA--WITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPL 218
I KV P+ RALK L A W G R++QS G+RA +PV+ I + + K P+
Sbjct: 133 INKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVLAI----------QRGVFKVLPI 181
Query: 219 ANVKGQDIWNFLRAMNIPINSLHSQGYISIG 249
+ + I+ +L+ + + L +GY+S+G
Sbjct: 182 IDWDNRTIYQYLQKHGLKYHPLWDEGYLSVG 212
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
LI YAPWC C+ +E Y L ++ +G V + D + + ++ FPTI F
Sbjct: 29 LIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLV-IAKMDATANDITNDQYKVEGFPTIYF 87
Query: 402 FPKHSAK-PVKYPSEKRDVDSLMAFVN 427
P K P+K+ RD++ L F++
Sbjct: 88 APSGDKKNPIKFEGGNRDLEHLSKFID 114
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 341 WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400
WL+ YAPWC CQ + + + A L+ + VKVG AD H+ Q + FPTI
Sbjct: 38 WLVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNAD-KHQSLGGQ-YGVQGFPTIK 94
Query: 401 FFPKHSAKPVKYPSEKRDVDSLMAFVNALR 430
F + KP Y + + A ++ALR
Sbjct: 95 IFGANKNKPEDYQGGRTGEAIVDAALSALR 124
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 320 LVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRA 379
+VS + L + + ++ W++ Y+PW H Q + + +A L G+ + VG
Sbjct: 545 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL-INVGSVDC 603
Query: 380 DGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSE---KRDVDSLMAF 425
G + F Q+ + +P I F+P+ S+K +Y S RD SL ++
Sbjct: 604 -GQYHSFCTQE-NVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSW 650
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
N + W + Y+P + ++ E A++++G+ +++G GD + + K + S
Sbjct: 131 NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL-LRIGAVNC-GDDRMLCRMK-GVNS 187
Query: 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426
+P++ F + VKY + R +SL+AF
Sbjct: 188 YPSLFIF-RSGMAAVKYNGD-RSKESLVAFA 216
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 341 WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400
W++ YAPW Q + LA ++G V+ GK D QK + ++P++
Sbjct: 678 WVVDFYAPWSGPSQNFAPEFELLARMIKG-KVRAGK--VDCQAYPQTCQKAGIKAYPSVK 734
Query: 401 FFPKHSAKPVKYPSE--KRDVDSLMAFV 426
+ AK + + RD ++ A +
Sbjct: 735 LYQYERAKKSIWEEQINSRDAKTIAALI 762
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 311 ASDLFNSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM 370
+ ++F +Q F+ G + + + + L++ YAPWC C+ + +Y ELA+
Sbjct: 349 SQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANA 408
Query: 371 GVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426
V A DH E + + + +PTI+ +P R +DSL F+
Sbjct: 409 TSDV--LIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFI 462
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 339 DPWLIVLYAPWCHFCQAMEGSYIELAEQL 367
D L +APWC C+ M Y++ AE L
Sbjct: 32 DLVLAEFFAPWCGHCKNMAPEYVKAAETL 60
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
L+ YAPWC C+A+ Y + A +L+ G ++ + D + Q+ + +PTI F
Sbjct: 28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKF 87
Query: 402 FPK-HSAKPVKYPSEKRDVDSLM 423
F +A P +Y + R+ D ++
Sbjct: 88 FRNGDTASPKEY-TAGREADDIV 109
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELA-EQLEGM-GVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
I YAPWC C+ + ++ EL+ ++ G+ GVK+ + + +K ++ +PT+
Sbjct: 27 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVR--GYPTL 84
Query: 400 LFFPKHSAKPVKYPSEKRDVDSLMAFV 426
L F K V S RD+DSL FV
Sbjct: 85 LLF--RGGKKVSEHSGGRDLDSLHRFV 109
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 329 ENLARLQNREDP-WLIVLYAPWCHFCQAMEGSYIELAEQL-EGMGVKVGKFRADGDHKEF 386
EN + N E+ LI YAPWC C+ +E Y EL E+L + + + K A +
Sbjct: 360 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND--- 416
Query: 387 AKQKLQLVSFPTILFFPKHSA-KPVKY 412
++ FPTI F P + P KY
Sbjct: 417 VPSPYEVRGFPTIYFSPANKKLNPKKY 443
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYI----ELAEQLEGMGVKVGKFRADGDHKEFAKQKL 391
+ ED W++ YAPWC C+ +E + E+ EQ +G KV D + +
Sbjct: 23 DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG---KVKLAAVDATVNQVLASRY 79
Query: 392 QLVSFPTILFFPKHSAKPVKY 412
+ FPTI F K + PV Y
Sbjct: 80 GIRGFPTIKIFQKGES-PVDY 99
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELA-EQLEGM-GVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
I YAPWC C+ + ++ EL+ ++ G+ GVK+ + + +K ++ +PT+
Sbjct: 25 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVR--GYPTL 82
Query: 400 LFFPKHSAKPVKYPSEKRDVDSLMAFV 426
L F K V S RD+DSL FV
Sbjct: 83 LLF--RGGKKVSEHSGGRDLDSLHRFV 107
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELA-EQLEGM-GVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
I YAPWC C+ + ++ EL+ ++ G+ GVK+ + + +K ++ +PT+
Sbjct: 20 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVR--GYPTL 77
Query: 400 LFFPKHSAKPVKYPSEKRDVDSLMAFV 426
L F K V S RD+DSL FV
Sbjct: 78 LLF--RGGKKVSEHSGGRDLDSLHRFV 102
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 329 ENLARLQNREDP-WLIVLYAPWCHFCQAMEGSYIELAEQL-EGMGVKVGKFRADGDHKEF 386
EN + N E+ LI YAPWC C+ +E Y EL E+L + + + K A +
Sbjct: 35 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND--- 91
Query: 387 AKQKLQLVSFPTILFFPKHSA-KPVKY 412
++ FPTI F P + P KY
Sbjct: 92 VPSPYEVRGFPTIYFSPANKKLNPKKY 118
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
+N + N D L+ YAPWC C+ + Y + A++L + + D +
Sbjct: 15 DNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLA 74
Query: 389 QKLQLVSFPTILFFPKHSAKPVKY--PSEKRDVDSLM 423
++ + +PT+ F K +P Y P EK + M
Sbjct: 75 KRFDVSGYPTLKIFRK--GRPFDYNGPREKYGIVDYM 109
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
EN + N D L+ YAPWC C+ + Y + A++L + + D +
Sbjct: 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLA 197
Query: 389 QKLQLVSFPTILFFPKHSAKPVKY--PSEKRDVDSLM 423
++ + +PT+ F K +P Y P EK + M
Sbjct: 198 KRFDVSGYPTLKIFRK--GRPYDYNGPREKYGIVDYM 232
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 29/78 (37%)
Query: 330 NLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQ 389
N +D L+ YAPWC C+ Y ++A L+ + + D
Sbjct: 24 NFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLAS 83
Query: 390 KLQLVSFPTILFFPKHSA 407
+ + +PTI K A
Sbjct: 84 RFDVSGYPTIKILKKGQA 101
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
L+ YAPWC C+ + ++ + A++L+G+ V+V D + + K + FPT++
Sbjct: 39 LVEFYAPWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLNKNKALCAKYDVNGFPTLMV 97
Query: 402 F 402
F
Sbjct: 98 F 98
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 320 LVSFRRTGIEN--LARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKF 377
L++ + GI+ LAR + + P L+ +APWC C+ M + A L G V++ K
Sbjct: 44 LITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAKI 102
Query: 378 RADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
+ ++Q P + F H + + + R L+ FV
Sbjct: 103 DTQAHPAVAGRHRIQ--GIPAFILF--HKGRELARAAGARPASELVGFVR 148
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
N + W + Y+P C C + ++ E A++++G+ +++G GD + + K + S
Sbjct: 112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNC-GDDRMLCRMK-GVNS 168
Query: 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426
+P++ F + VKY + R +SL+AF
Sbjct: 169 YPSLFIF-RSGMAAVKYNGD-RSKESLVAFA 197
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVK--VGKFRADGDHKEFAKQKLQLVSFPTI 399
LI YAPWC C+A+ Y EL K V + D + ++ FPTI
Sbjct: 29 LIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD---EIQGFPTI 85
Query: 400 LFFPKHS-AKPVKYPSEKRDVDSLMAFV 426
+P + +PV Y S R V+ L+ F+
Sbjct: 86 KLYPAGAKGQPVTY-SGSRTVEDLIKFI 112
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
E W+I YAPWC CQ ++ + AE E + V + K D + + + + P
Sbjct: 22 EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAK--VDVTEQPGLSGRFIINALP 79
Query: 398 TILFFPKHSAKPVKYPSEKRDVDSLMA 424
TI + + P K+D + ++
Sbjct: 80 TIYHCKDGEFRRYQGPRTKKDFINFIS 106
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
E P ++ +APWC C+ + ELA++ G K+ ++ + D + + S P
Sbjct: 18 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNIRSIP 74
Query: 398 TILFF 402
T+LFF
Sbjct: 75 TVLFF 79
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
E P ++ +APWC C+ + ELA++ G K+ ++ + D + + S P
Sbjct: 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNIRSIP 73
Query: 398 TILFF 402
T+LFF
Sbjct: 74 TVLFF 78
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQL 393
++ DP +I+ WC C+ M+ ++ E+A Q+EG ++ A+ K A +L +
Sbjct: 13 VRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEG-DIRFAYMDAEDAEKTMA--ELNI 69
Query: 394 VSFPTILFF 402
+ P++ F
Sbjct: 70 RTLPSLALF 78
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGM-GVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400
+ YAPWC C+ + + +L E + + + K + + E +++ SFPT+
Sbjct: 29 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVE----AVKVHSFPTLK 84
Query: 401 FFPKHSAKPVKYPSEKRDVDSLMAFV 426
FFP + + V + +R +D F+
Sbjct: 85 FFPASADRTVIDYNGERTLDGFKKFL 110
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGM-GVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400
+ YAPWC C+ + + +L E + + + K + + E K + SFPT+
Sbjct: 271 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVK----VHSFPTLK 326
Query: 401 FFPKHSAKPVKYPSEKRDVDSLMAFVNA 428
FFP + + V + +R +D F+ +
Sbjct: 327 FFPASADRTVIDYNGERTLDGFKKFLES 354
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 341 WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400
W++ YAPWC CQ + LA ++G KV + D QK + ++P++
Sbjct: 24 WVVDFYAPWCGPCQNFAPEFELLARMIKG---KVRAGKVDCQAYPQTCQKAGIKAYPSVK 80
Query: 401 FFPKHSAKPVKYPSE--KRDVDSLMAFV 426
+ AK + + RD ++ A +
Sbjct: 81 LYQYERAKKSIWEEQINSRDAKTIAALI 108
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 35.8 bits (81), Expect = 0.047, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
+D L+ YAPWC C+ Y ++A L+ + + D K + +P
Sbjct: 34 KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYP 93
Query: 398 TILFFPKHSA 407
TI K A
Sbjct: 94 TIKILKKGQA 103
>pdb|1ZUN|A Chain A, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 325
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 31/205 (15%)
Query: 59 ASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAK---LTGR-PFRVFSLDTGRLNPETH 114
A + I+ + +F N + + G + V + A+ G+ PF V +DT E +
Sbjct: 33 AESIHIIREVAAEFDNPVXLYSIGKDSAVXLHLARKAFFPGKLPFPVXHVDTRWKFQEXY 92
Query: 115 QFFDTVEKHYGIR-IEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK- 172
+F D + G+ I + P+ V +G+ F G + I K LK+AL
Sbjct: 93 RFRDQXVEEXGLDLITHINPDGV-------AQGINPFTH-GSAKHTDIXKTEGLKQALDK 144
Query: 173 -GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDG---------------GKGSLVKWN 216
G A G R+D+ +RA+ V S D KG ++
Sbjct: 145 HGFDAAFGGARRDEEK-SRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVF 203
Query: 217 PLANVKGQDIWNFLRAMNIPINSLH 241
PL+N DIW ++ IPI L+
Sbjct: 204 PLSNWTELDIWQYIYLEGIPIVPLY 228
>pdb|2F9I|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|D Chain D, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 285
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 26 VCYYGPHHKGVEG--RIESTNDHEDYEKLARGMESASP------LEIMDKAFQKFGNDIA 77
VC+ HH + RIE+ +D + + +GM SA+P LE ++K QK
Sbjct: 51 VCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQK------ 104
Query: 78 IAFSGAEDVVLIEYAKLTGRPFRVFSLDT 106
+G ++ V+ A+L G F V +D+
Sbjct: 105 ---TGLKEAVVTGTAQLDGMKFGVAVMDS 130
>pdb|2WSI|A Chain A, Crystal Structure Of Yeast Fad Synthetase (Fad1) In
Complex With Fad
Length = 306
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 50/140 (35%), Gaps = 8/140 (5%)
Query: 126 IRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQ 185
I E TFP + S YE Q + + +K I + +
Sbjct: 107 IDQEETFPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIK-----IYPETEAI 161
Query: 186 SPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGY 245
G R P + + D ++ PL + +IW+FL N PI L+ +G+
Sbjct: 162 VIGIRHTDPFGEALKPIQRTDSNWPDFMRLQPLLHWDLTNIWSFLLYSNEPICGLYGKGF 221
Query: 246 ISIGCEPCTRPVLPGQHERE 265
SIG LP H R+
Sbjct: 222 TSIG---GINNSLPNPHLRK 238
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKF---RADGDHKE 385
EN+ + N D L+ YA WC F Q + + E ++ ++ + R D D
Sbjct: 13 ENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS 72
Query: 386 FAKQKLQLVSFPTILFF 402
Q+ ++ +PT+ F
Sbjct: 73 DIAQRYRISKYPTLKLF 89
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
E L +L + P +I +APWC C++ + E A + G KV + + + +
Sbjct: 46 ETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAG---KVRFVKVNTEAEPALS 102
Query: 389 QKLQLVSFPTILFF 402
+ ++ S PTI +
Sbjct: 103 TRFRIRSIPTIXLY 116
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
E P ++ +APWC + + ELA++ G K+ ++ + D + + S P
Sbjct: 18 EVPVMVDFWAPWCGPSKLIAPVIDELAKEYSG---KIAVYKLNTDEAPGIATQYNIRSIP 74
Query: 398 TILFF 402
T+LFF
Sbjct: 75 TVLFF 79
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 319 KLVSFRRTG-IENLARLQNREDPWLIV-LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGK 376
KL+ ++ G +E+L L+ ++ ++V +A WC C+ + + EL+E+ + + VKV
Sbjct: 5 KLIELKQDGDLESL--LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKV-- 60
Query: 377 FRADGDHKEFAKQKLQLVSFPTIL 400
D D E +K + + PT +
Sbjct: 61 ---DVDKLEETARKYNISAMPTFI 81
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
+ P ++ YA WC C+ + ELA++ +G ++ ++ D + ++ + S P
Sbjct: 38 DKPAIVDFYADWCGPCKMVAPILDELAKEYDG---QIVIYKVDTEKEQELAGAFGIRSIP 94
Query: 398 TILFFP 403
+ILF P
Sbjct: 95 SILFIP 100
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 306 NGSAPASDLFNSQKLVS-----FRRTGIENLARLQNREDPW--------LIVLYAPWCHF 352
N S A+D ++K S R ++ +A +N W ++ YA WC
Sbjct: 6 NKSTTATDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGP 65
Query: 353 CQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFP 403
C+ + EL+++ G K+ ++ + D + + + S PTI F P
Sbjct: 66 CKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQSIPTIWFVP 113
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 329 ENLARLQNREDPWLIV-LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFA 387
E L RL+ + L+V +APW C M ELA++L V K A+G +
Sbjct: 24 EELLRLKAKS--LLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPE--V 77
Query: 388 KQKLQLVSFPTILFF 402
+K ++ S PT LFF
Sbjct: 78 SEKYEISSVPTFLFF 92
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 312 SDLFNSQKLVSFRRTG-IENLARLQNREDPWLIV-LYAPWCHFCQAMEGSYIELAEQLEG 369
S L +L+ ++ G +E+L L+ ++ ++V +A WC C+ + + EL+E+ +
Sbjct: 7 SQLVIMSELIELKQDGDLESL--LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA 64
Query: 370 MGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400
+ VKV D D E +K + + PT +
Sbjct: 65 IFVKV-----DVDKLEETARKYNISAMPTFI 90
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 328 IENLARLQNREDPWLIV-LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEF 386
E L RL+ + L+V +APW C M ELA++L V K A+G +
Sbjct: 29 FEELLRLKAKS--LLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPE-- 82
Query: 387 AKQKLQLVSFPTILFF 402
+K ++ S PT LFF
Sbjct: 83 VSEKYEISSVPTFLFF 98
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 33.1 bits (74), Expect = 0.31, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
L+ +A WC C+ + ELA EG K + D D K +++S PT++
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEG---KADILKLDVDENPSTAAKYEVMSIPTLIV 80
Query: 402 F 402
F
Sbjct: 81 F 81
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 316 NSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVG 375
+S+K + + T + + P L+ +A WC C+ + E+A + + V
Sbjct: 8 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATDLTVA 66
Query: 376 KFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVK 411
K D + + + Q+VS PT++ F +PVK
Sbjct: 67 KLDVDTNPE--TARNFQVVSIPTLILF--KDGQPVK 98
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 316 NSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVG 375
+S+K + + T + + P L+ +A WC C+ + E+A + + V
Sbjct: 3 DSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATDLTVA 61
Query: 376 KFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVK 411
K D + + + Q+VS PT++ F +PVK
Sbjct: 62 KLDVDTNPE--TARNFQVVSIPTLILF--KDGQPVK 93
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
L+ +A WC C+ + ELA EG K + D D K +++S PT++
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEG---KADILKLDVDENPSTAAKYEVMSIPTLIV 79
Query: 402 F 402
F
Sbjct: 80 F 80
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 32.3 bits (72), Expect = 0.48, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
L+ +A WC C+ + ELA EG K + D D K +++S PT++
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEG---KADILKLDVDENPSTAAKYEVMSIPTLIV 80
Query: 402 F 402
F
Sbjct: 81 F 81
>pdb|3FWK|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase
pdb|3G59|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Atp
pdb|3G5A|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|B Chain B, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|C Chain C, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|D Chain D, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|E Chain E, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G5A|F Chain F, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fmn And Atp Analog
Ampcpp
pdb|3G6K|A Chain A, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|B Chain B, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|C Chain C, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|D Chain D, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|E Chain E, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
pdb|3G6K|F Chain F, Crystal Structure Of Candida Glabrata Fmn
Adenylyltransferase In Complex With Fad And Inorganic
Pyrophosphate
Length = 308
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 188 GTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYIS 247
G R P + + D + PL + +IW+FL N PI L+ G+ S
Sbjct: 167 GIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTS 226
Query: 248 IGCEPCTRPVLPGQHEREGR 267
+G LP H R+ +
Sbjct: 227 LG---NVEETLPNPHLRKDK 243
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 32.0 bits (71), Expect = 0.71, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
+I +A WC C+ + + ++++ G KVG ++ D D + Q++ + + PT +F
Sbjct: 37 VIDFWATWCGPCKMIGPVFEKISDT--PAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVF 94
Query: 402 F 402
F
Sbjct: 95 F 95
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 306 NGSAPASDLFNSQKLVS-----FRRTGIENLARLQNREDPW--------LIVLYAPWCHF 352
N S A+D ++K S R ++ +A +N W ++ YA WC
Sbjct: 6 NKSTTATDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGP 65
Query: 353 CQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFP 403
C+ + EL+++ G K+ ++ + D + + + PTI F P
Sbjct: 66 CKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQGIPTIWFVP 113
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 345 LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400
+APWC C+ + EL ++ MG K+ + D D + K ++S PT+L
Sbjct: 24 FWAPWCGPCKMIAPVLEELDQE---MGDKLKIVKIDVDENQETAGKYGVMSIPTLL 76
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 341 WLIVLYAPWCHFCQAMEGSYIELAEQLEGM--GVKVGKFRADGDHKEFAKQKLQLVSFPT 398
W + +A WC C A ++ LAE ++ + + + + + FPT
Sbjct: 33 WAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT 92
Query: 399 ILFFPKHS--AKPVKYPSEKRDVDSL 422
+ FF + +P DV +L
Sbjct: 93 VRFFXAFTXNGSGAVFPVAGADVQTL 118
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
+ P L+ +APWC C+ + ELA++ EG V + + D + + S P
Sbjct: 19 DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVV---KVNVDENPNTAAQYGIRSIP 75
Query: 398 TILFF 402
T+L F
Sbjct: 76 TLLLF 80
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
L+ +APWC C+ + Y A +L+G+ V + D K + +PT+
Sbjct: 25 LVEFFAPWCGHCKRLAPEYEAAATRLKGI---VPLAKVDCTANTNTCNKYGVSGYPTLKI 81
Query: 402 F 402
F
Sbjct: 82 F 82
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 330 NLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRAD---GDHKEF 386
N A ++ + P ++ LYA WC C+ E Y Q++ +A+ D ++
Sbjct: 23 NQALVEAKGKPVMLDLYADWCVACKEFE-KYTFSDPQVQKALADTVLLQANVTANDAQDV 81
Query: 387 AKQK-LQLVSFPTILFF 402
A K L ++ PTILFF
Sbjct: 82 ALLKHLNVLGLPTILFF 98
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 330 NLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRAD---GDHKEF 386
N A ++ + P ++ LYA WC C+ E Y Q++ +A+ D ++
Sbjct: 20 NQALVEAKGKPVMLDLYADWCVACKEFE-KYTFSDPQVQKALADTVLLQANVTANDAQDV 78
Query: 387 AKQK-LQLVSFPTILFF 402
A K L ++ PTILFF
Sbjct: 79 ALLKHLNVLGLPTILFF 95
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
+ P ++ ++ WC C+AM Y +LAE E + V K + ++K AK+ L + P
Sbjct: 37 DKPVVLDMFTQWCGPCKAMAPKYEKLAE--EYLDVIFLKLDCNQENKTLAKE-LGIRVVP 93
Query: 398 TILFFPKHS 406
T ++S
Sbjct: 94 TFKILKENS 102
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
+ P ++ ++ WC C+AM Y +LAE E + V K + ++K AK+ L + P
Sbjct: 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAE--EYLDVIFLKLDCNQENKTLAKE-LGIRVVP 81
Query: 398 TILFFPKHS 406
T ++S
Sbjct: 82 TFKILKENS 90
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
++ +A WC C+ + + AEQ ++ D D QK ++ S PT++F
Sbjct: 23 VVDFFATWCGPCKMIAPMIEKFAEQYSDAAF----YKLDVDEVSDVAQKAEVSSMPTLIF 78
Query: 402 F 402
+
Sbjct: 79 Y 79
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
++ +A WC C+ + + AEQ ++ D D QK ++ S PT++F
Sbjct: 30 VVDFFATWCGPCKMIAPMIEKFAEQYSDAAF----YKLDVDEVSDVAQKAEVSSMPTLIF 85
Query: 402 F 402
+
Sbjct: 86 Y 86
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 329 ENLARLQNREDPWLIVL--YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEF 386
E+ + N L+V+ YA WC C+ + EL++ + V + D D E
Sbjct: 9 EDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS----DVVFLKVDVDECED 64
Query: 387 AKQKLQLVSFPTILF 401
Q Q+ PT LF
Sbjct: 65 IAQDNQIACMPTFLF 79
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
L+ +A WC C+ + E+A++ EG K+ + D D + ++ S PT++
Sbjct: 23 LVDFWAEWCAPCRXIAPILEEIAKEYEG---KLLVAKLDVDENPKTAXRYRVXSIPTVIL 79
Query: 402 FPKHSAKPVK 411
F +PV+
Sbjct: 80 F--KDGQPVE 87
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
L+ +A WC C+ + E+A++ EG K+ + D D + ++ S PT++
Sbjct: 22 LVDFWAEWCAPCRXIAPILEEIAKEYEG---KLLVAKLDVDENPKTAXRYRVXSIPTVIL 78
Query: 402 FPKHSAKPVK 411
F +PV+
Sbjct: 79 F--KDGQPVE 86
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLV 394
E P L+ +A WC CQ M I LA +KV K D + K K++ V
Sbjct: 25 EQPVLVYFWASWCGPCQLMS-PLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGV 80
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 28.1 bits (61), Expect = 9.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
++ +A WC C + ELAE +G GK +D ++ + A + ++S PT++F
Sbjct: 20 VVDFWAEWCAPCLILAPIIEELAEDYPQVGF--GKLNSD-ENPDIAA-RYGVMSLPTVIF 75
Query: 402 F 402
F
Sbjct: 76 F 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,892,597
Number of Sequences: 62578
Number of extensions: 551227
Number of successful extensions: 1288
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 73
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)