Query 042284
Match_columns 430
No_of_seqs 494 out of 2948
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00424 APS_reduc 5'-adenyly 100.0 3.1E-91 6.8E-96 697.2 42.6 376 46-430 88-463 (463)
2 PLN02309 5'-adenylylsulfate re 100.0 3.4E-91 7.5E-96 697.0 42.1 374 46-430 83-457 (457)
3 TIGR02057 PAPS_reductase phosp 100.0 3.7E-61 8E-66 444.7 22.5 219 50-281 2-226 (226)
4 KOG0189 Phosphoadenosine phosp 100.0 1.4E-61 3E-66 417.2 16.0 233 45-288 18-253 (261)
5 PRK02090 phosphoadenosine phos 100.0 2.4E-58 5.2E-63 432.0 24.5 231 41-284 8-239 (241)
6 TIGR00434 cysH phosophoadenyly 100.0 8.3E-57 1.8E-61 414.8 22.3 209 61-282 1-212 (212)
7 COG0175 CysH 3'-phosphoadenosi 100.0 2.9E-54 6.2E-59 407.2 21.0 235 46-290 12-250 (261)
8 TIGR02055 APS_reductase thiore 100.0 1.8E-53 4E-58 384.6 20.1 189 83-280 2-191 (191)
9 PRK12563 sulfate adenylyltrans 100.0 1.4E-43 3.1E-48 336.1 19.5 192 59-259 24-270 (312)
10 TIGR02039 CysD sulfate adenyly 100.0 5.8E-42 1.3E-46 324.5 18.1 192 59-260 6-253 (294)
11 PRK08557 hypothetical protein; 100.0 7.4E-42 1.6E-46 339.4 19.0 188 58-258 163-359 (417)
12 PRK13794 hypothetical protein; 100.0 5.7E-41 1.2E-45 341.1 18.1 187 58-257 232-424 (479)
13 PRK05253 sulfate adenylyltrans 100.0 2.9E-40 6.3E-45 315.9 19.4 192 59-260 14-260 (301)
14 PF01507 PAPS_reduct: Phosphoa 100.0 6.9E-41 1.5E-45 299.3 13.9 170 75-256 1-174 (174)
15 PRK13795 hypothetical protein; 100.0 2E-38 4.3E-43 333.5 17.9 188 58-257 228-420 (636)
16 PRK08576 hypothetical protein; 100.0 6.2E-34 1.3E-38 283.3 18.6 196 47-257 208-407 (438)
17 cd01713 PAPS_reductase This do 100.0 1.4E-32 2.9E-37 244.6 16.8 167 75-249 1-173 (173)
18 TIGR03183 DNA_S_dndC putative 100.0 4.7E-31 1E-35 263.0 15.8 191 63-256 3-248 (447)
19 PRK06850 hypothetical protein; 100.0 2.9E-30 6.3E-35 259.8 16.0 193 62-256 23-267 (507)
20 COG3969 Predicted phosphoadeno 99.9 1.3E-23 2.9E-28 195.6 10.9 205 61-268 16-264 (407)
21 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.5E-21 3.2E-26 160.9 13.4 106 317-426 8-113 (113)
22 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 3.2E-20 7E-25 150.6 12.6 99 319-425 2-100 (101)
23 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 4.3E-20 9.3E-25 150.6 12.6 102 319-426 2-104 (104)
24 KOG0910 Thioredoxin-like prote 99.8 2.4E-20 5.1E-25 156.8 10.8 104 319-429 44-147 (150)
25 cd02996 PDI_a_ERp44 PDIa famil 99.8 7.6E-20 1.7E-24 150.3 12.6 102 319-426 2-108 (108)
26 cd03065 PDI_b_Calsequestrin_N 99.8 1.5E-19 3.2E-24 150.0 12.4 104 318-429 9-118 (120)
27 PF00085 Thioredoxin: Thioredo 99.8 3.3E-19 7.1E-24 144.6 13.4 102 320-428 1-102 (103)
28 cd02993 PDI_a_APS_reductase PD 99.8 2.7E-19 5.7E-24 147.3 12.8 108 319-426 2-109 (109)
29 cd02994 PDI_a_TMX PDIa family, 99.8 3.3E-19 7.2E-24 144.6 13.1 100 319-428 2-101 (101)
30 cd02963 TRX_DnaJ TRX domain, D 99.8 4.1E-19 8.9E-24 146.6 11.4 105 321-429 7-111 (111)
31 COG3118 Thioredoxin domain-con 99.8 4.9E-19 1.1E-23 164.3 13.0 107 318-429 23-129 (304)
32 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.5E-18 3.2E-23 142.7 12.7 103 319-427 1-109 (109)
33 cd03001 PDI_a_P5 PDIa family, 99.8 5.4E-18 1.2E-22 137.7 13.3 101 320-426 2-102 (103)
34 PTZ00443 Thioredoxin domain-co 99.8 4.6E-18 1E-22 156.3 13.8 106 318-428 30-137 (224)
35 PHA02278 thioredoxin-like prot 99.8 4.1E-18 9E-23 138.1 11.5 94 325-425 4-100 (103)
36 cd03005 PDI_a_ERp46 PDIa famil 99.8 5.1E-18 1.1E-22 137.6 12.0 99 320-426 2-102 (102)
37 cd02954 DIM1 Dim1 family; Dim1 99.8 2.4E-18 5.3E-23 140.6 9.7 79 325-407 2-80 (114)
38 cd02999 PDI_a_ERp44_like PDIa 99.8 4.5E-18 9.8E-23 137.6 11.1 92 327-426 8-100 (100)
39 cd02948 TRX_NDPK TRX domain, T 99.8 8.5E-18 1.8E-22 136.6 12.1 98 323-429 5-102 (102)
40 cd02956 ybbN ybbN protein fami 99.8 9.6E-18 2.1E-22 134.6 12.2 96 326-427 1-96 (96)
41 PRK09381 trxA thioredoxin; Pro 99.8 2.3E-17 4.9E-22 135.7 13.9 106 317-429 2-107 (109)
42 PRK10996 thioredoxin 2; Provis 99.7 2.3E-17 4.9E-22 141.8 13.8 103 319-429 36-138 (139)
43 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 2E-17 4.3E-22 134.4 12.3 102 319-426 1-104 (104)
44 cd02985 TRX_CDSP32 TRX family, 99.7 2.5E-17 5.4E-22 134.1 12.3 98 324-428 2-101 (103)
45 cd02962 TMX2 TMX2 family; comp 99.7 2.7E-17 5.8E-22 142.4 13.0 104 318-425 28-147 (152)
46 KOG0907 Thioredoxin [Posttrans 99.7 1.9E-17 4.1E-22 134.3 10.9 86 337-429 20-105 (106)
47 cd02997 PDI_a_PDIR PDIa family 99.7 3.7E-17 8.1E-22 132.9 12.4 101 319-426 1-104 (104)
48 KOG0190 Protein disulfide isom 99.7 1.1E-17 2.3E-22 167.2 10.6 105 317-428 24-130 (493)
49 cd03007 PDI_a_ERp29_N PDIa fam 99.7 2.6E-17 5.6E-22 135.0 10.9 101 319-429 2-115 (116)
50 cd02998 PDI_a_ERp38 PDIa famil 99.7 4.5E-17 9.8E-22 132.5 12.1 102 320-426 2-105 (105)
51 TIGR01126 pdi_dom protein disu 99.7 6.2E-17 1.3E-21 130.9 12.4 100 323-429 1-101 (102)
52 cd02965 HyaE HyaE family; HyaE 99.7 5E-17 1.1E-21 131.9 10.5 98 318-423 10-109 (111)
53 cd03000 PDI_a_TMX3 PDIa family 99.7 1E-16 2.2E-21 130.7 12.0 96 326-430 7-104 (104)
54 cd02989 Phd_like_TxnDC9 Phosdu 99.7 1.5E-16 3.2E-21 131.7 12.3 102 318-426 4-112 (113)
55 PLN00410 U5 snRNP protein, DIM 99.7 1.9E-16 4.2E-21 134.4 12.6 101 324-429 10-119 (142)
56 cd02957 Phd_like Phosducin (Ph 99.7 9.8E-17 2.1E-21 132.9 10.3 103 318-426 4-112 (113)
57 KOG0190 Protein disulfide isom 99.7 5.7E-17 1.2E-21 162.1 10.4 118 304-428 352-471 (493)
58 cd02986 DLP Dim1 family, Dim1- 99.7 5.1E-16 1.1E-20 125.9 12.6 99 326-428 3-109 (114)
59 cd02992 PDI_a_QSOX PDIa family 99.7 5.3E-16 1.1E-20 128.6 12.7 104 319-425 2-111 (114)
60 cd02961 PDI_a_family Protein D 99.7 4.4E-16 9.5E-21 125.0 11.3 99 322-426 2-101 (101)
61 TIGR01068 thioredoxin thioredo 99.7 1.2E-15 2.6E-20 122.9 12.9 100 323-429 1-100 (101)
62 cd02953 DsbDgamma DsbD gamma f 99.7 8.7E-16 1.9E-20 125.2 10.9 95 326-427 2-104 (104)
63 cd02984 TRX_PICOT TRX domain, 99.7 1.2E-15 2.5E-20 122.6 11.4 95 325-426 2-96 (97)
64 cd02987 Phd_like_Phd Phosducin 99.6 1.6E-15 3.5E-20 135.0 11.9 107 318-429 62-174 (175)
65 cd02950 TxlA TRX-like protein 99.6 3.2E-15 7E-20 128.8 13.1 98 325-429 10-109 (142)
66 PTZ00051 thioredoxin; Provisio 99.6 6.4E-15 1.4E-19 118.5 11.3 94 320-423 2-96 (98)
67 cd02949 TRX_NTR TRX domain, no 99.6 7E-15 1.5E-19 118.3 10.7 87 336-427 11-97 (97)
68 cd01992 PP-ATPase N-terminal d 99.6 6.4E-15 1.4E-19 132.9 11.3 154 75-241 1-167 (185)
69 TIGR01130 ER_PDI_fam protein d 99.6 9.2E-15 2E-19 150.3 13.8 105 319-429 2-108 (462)
70 PTZ00102 disulphide isomerase; 99.6 1.5E-14 3.2E-19 149.7 14.6 104 318-429 32-137 (477)
71 PTZ00102 disulphide isomerase; 99.6 1.7E-14 3.8E-19 149.1 15.1 108 317-429 356-464 (477)
72 KOG4277 Uncharacterized conser 99.6 3E-15 6.5E-20 137.6 7.5 101 319-429 29-131 (468)
73 cd02975 PfPDO_like_N Pyrococcu 99.6 2.1E-14 4.4E-19 118.8 11.5 89 336-429 20-109 (113)
74 TIGR01295 PedC_BrcD bacterioci 99.6 3.3E-14 7.1E-19 119.1 12.1 101 319-427 7-121 (122)
75 KOG0908 Thioredoxin-like prote 99.6 1.4E-14 3E-19 130.3 9.5 102 320-429 3-105 (288)
76 cd02951 SoxW SoxW family; SoxW 99.6 4.6E-14 9.9E-19 119.0 12.1 93 334-429 9-118 (125)
77 cd02988 Phd_like_VIAF Phosduci 99.6 2.5E-14 5.5E-19 129.0 10.9 105 318-429 82-191 (192)
78 KOG0912 Thiol-disulfide isomer 99.5 2.5E-14 5.3E-19 132.1 8.7 101 323-429 1-105 (375)
79 TIGR02432 lysidine_TilS_N tRNA 99.5 8.5E-14 1.8E-18 126.0 12.1 157 75-241 1-171 (189)
80 cd02952 TRP14_like Human TRX-r 99.5 9.8E-14 2.1E-18 114.8 10.1 95 326-426 10-118 (119)
81 cd02947 TRX_family TRX family; 99.5 1.9E-13 4.2E-18 107.4 11.3 92 327-427 2-93 (93)
82 KOG2644 3'-phosphoadenosine 5' 99.5 1.6E-14 3.5E-19 133.3 5.3 151 75-256 84-247 (282)
83 cd01993 Alpha_ANH_like_II This 99.5 7.7E-14 1.7E-18 125.7 9.5 159 75-239 1-176 (185)
84 cd02982 PDI_b'_family Protein 99.5 2.7E-13 5.9E-18 110.0 11.0 88 337-429 11-102 (103)
85 TIGR01130 ER_PDI_fam protein d 99.5 3.7E-13 8E-18 138.4 13.4 106 317-429 345-453 (462)
86 COG1606 ATP-utilizing enzymes 99.4 2E-12 4.3E-17 117.6 11.5 152 62-238 7-167 (269)
87 TIGR00411 redox_disulf_1 small 99.4 3.4E-12 7.4E-17 98.9 10.6 80 341-429 2-81 (82)
88 PRK10696 tRNA 2-thiocytidine b 99.4 6.4E-12 1.4E-16 119.3 14.3 168 62-238 13-198 (258)
89 TIGR00268 conserved hypothetic 99.3 1.6E-11 3.5E-16 116.1 14.2 151 63-238 3-161 (252)
90 cd02959 ERp19 Endoplasmic reti 99.3 2.7E-12 5.8E-17 106.8 7.8 97 328-427 8-110 (117)
91 KOG0191 Thioredoxin/protein di 99.3 3.4E-12 7.4E-17 128.2 9.4 106 319-429 145-251 (383)
92 TIGR02187 GlrX_arch Glutaredox 99.3 3.9E-12 8.4E-17 117.6 8.6 89 338-429 19-110 (215)
93 PTZ00062 glutaredoxin; Provisi 99.3 1.4E-11 3E-16 111.7 10.5 89 324-429 5-93 (204)
94 KOG0191 Thioredoxin/protein di 99.3 9.5E-12 2.1E-16 125.0 10.5 102 320-428 31-132 (383)
95 PF01171 ATP_bind_3: PP-loop f 99.3 2.1E-11 4.5E-16 109.8 10.3 152 75-239 1-165 (182)
96 PRK00293 dipZ thiol:disulfide 99.3 3.2E-11 6.9E-16 126.5 12.5 103 324-430 459-570 (571)
97 cd02955 SSP411 TRX domain, SSP 99.3 2.8E-11 6.1E-16 101.2 9.6 78 324-407 4-92 (124)
98 cd01990 Alpha_ANH_like_I This 99.3 4E-11 8.7E-16 109.7 11.5 142 76-237 1-148 (202)
99 COG0037 MesJ tRNA(Ile)-lysidin 99.3 2.9E-11 6.3E-16 117.4 10.8 164 64-237 9-188 (298)
100 PHA02125 thioredoxin-like prot 99.2 5.3E-11 1.1E-15 90.8 9.1 72 342-426 2-73 (75)
101 TIGR00412 redox_disulf_2 small 99.2 4.6E-11 1E-15 91.4 8.4 74 342-426 2-75 (76)
102 KOG1731 FAD-dependent sulfhydr 99.2 1.2E-11 2.6E-16 123.8 6.2 112 312-427 32-150 (606)
103 TIGR02187 GlrX_arch Glutaredox 99.2 6.5E-11 1.4E-15 109.4 10.6 95 322-428 119-214 (215)
104 PRK03147 thiol-disulfide oxido 99.2 1.9E-10 4E-15 102.4 13.2 107 319-430 45-172 (173)
105 PRK14018 trifunctional thiored 99.2 1.1E-10 2.4E-15 119.5 12.0 89 337-428 55-171 (521)
106 TIGR02740 TraF-like TraF-like 99.2 1.7E-10 3.6E-15 109.9 11.2 88 337-429 165-263 (271)
107 cd01997 GMP_synthase_C The C-t 99.2 4.2E-10 9.1E-15 108.1 13.4 167 75-247 1-176 (295)
108 TIGR02738 TrbB type-F conjugat 99.2 2.9E-10 6.3E-15 98.8 11.1 89 337-429 49-152 (153)
109 PF13098 Thioredoxin_2: Thiore 99.1 7.1E-11 1.5E-15 97.3 6.5 87 336-426 3-112 (112)
110 PRK00919 GMP synthase subunit 99.1 1.2E-09 2.6E-14 105.2 15.6 170 63-246 13-188 (307)
111 cd01712 ThiI ThiI is required 99.1 6.4E-10 1.4E-14 99.6 12.9 148 75-237 1-158 (177)
112 PRK00074 guaA GMP synthase; Re 99.1 6.1E-10 1.3E-14 115.4 14.3 167 74-247 216-391 (511)
113 TIGR00884 guaA_Cterm GMP synth 99.1 1.5E-09 3.2E-14 105.3 15.4 175 63-245 8-189 (311)
114 cd01995 ExsB ExsB is a transcr 99.1 3.2E-09 6.9E-14 94.3 15.9 140 75-243 1-146 (169)
115 cd03008 TryX_like_RdCVF Trypar 99.1 4.6E-10 1E-14 96.5 10.0 76 337-414 24-130 (146)
116 PF13905 Thioredoxin_8: Thiore 99.1 8.8E-10 1.9E-14 87.9 10.1 68 338-406 1-93 (95)
117 cd03009 TryX_like_TryX_NRX Try 99.1 8E-10 1.7E-14 93.7 10.1 69 337-406 17-110 (131)
118 PRK00143 mnmA tRNA-specific 2- 99.1 3E-09 6.5E-14 105.0 15.6 157 75-238 2-183 (346)
119 cd02964 TryX_like_family Trypa 99.1 7.2E-10 1.6E-14 94.3 9.7 75 337-413 16-116 (132)
120 cd02973 TRX_GRX_like Thioredox 99.1 4.4E-10 9.6E-15 83.6 7.2 56 342-401 3-58 (67)
121 PRK15412 thiol:disulfide inter 99.1 1.4E-09 2.9E-14 98.2 11.6 87 337-429 67-175 (185)
122 PRK11509 hydrogenase-1 operon 99.0 2.7E-09 5.9E-14 89.4 11.5 101 322-429 21-123 (132)
123 PRK14561 hypothetical protein; 99.0 4.5E-09 9.8E-14 95.3 13.8 139 75-233 2-146 (194)
124 cd03010 TlpA_like_DsbE TlpA-li 99.0 1.7E-09 3.6E-14 91.2 10.0 80 337-422 24-126 (127)
125 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 1.8E-09 4E-14 90.3 9.8 93 323-425 8-121 (123)
126 TIGR00385 dsbE periplasmic pro 99.0 2.6E-09 5.6E-14 95.3 10.6 86 337-429 62-170 (173)
127 cd02958 UAS UAS family; UAS is 99.0 5.8E-09 1.3E-13 86.3 11.3 100 327-429 5-110 (114)
128 TIGR00420 trmU tRNA (5-methyla 99.0 7.2E-09 1.6E-13 102.4 13.9 160 75-239 2-188 (352)
129 PRK14665 mnmA tRNA-specific 2- 99.0 9.5E-09 2.1E-13 101.5 14.4 171 74-254 6-196 (360)
130 COG4232 Thiol:disulfide interc 99.0 2.7E-09 5.8E-14 108.4 10.5 103 322-429 458-567 (569)
131 cd01998 tRNA_Me_trans tRNA met 99.0 2.2E-08 4.8E-13 99.1 16.3 159 75-237 1-183 (349)
132 cd02966 TlpA_like_family TlpA- 98.9 6.2E-09 1.3E-13 84.9 9.4 75 337-412 18-114 (116)
133 PRK10660 tilS tRNA(Ile)-lysidi 98.9 5.7E-09 1.2E-13 106.2 11.1 153 73-239 15-179 (436)
134 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 6.3E-09 1.4E-13 82.0 8.8 76 338-423 12-87 (89)
135 PLN02919 haloacid dehalogenase 98.9 5.7E-09 1.2E-13 116.8 11.7 89 337-429 419-535 (1057)
136 PRK08349 hypothetical protein; 98.9 1E-08 2.3E-13 93.4 11.1 149 75-236 2-159 (198)
137 PLN02347 GMP synthetase 98.9 1.8E-08 3.9E-13 104.4 13.2 175 63-247 217-415 (536)
138 KOG0913 Thiol-disulfide isomer 98.9 6.6E-10 1.4E-14 99.8 1.2 100 318-427 24-123 (248)
139 cd02967 mauD Methylamine utili 98.9 1.4E-08 2.9E-13 83.8 9.0 68 337-406 20-106 (114)
140 KOG0914 Thioredoxin-like prote 98.9 4E-09 8.8E-14 93.4 6.1 87 318-407 124-217 (265)
141 TIGR00552 nadE NAD+ synthetase 98.8 6.3E-08 1.4E-12 91.6 14.6 159 63-237 11-177 (250)
142 cd03012 TlpA_like_DipZ_like Tl 98.8 1.6E-08 3.5E-13 85.2 9.3 77 337-414 22-124 (126)
143 PRK13728 conjugal transfer pro 98.8 2.8E-08 6E-13 88.1 10.9 83 342-429 73-170 (181)
144 TIGR00364 exsB protein. This p 98.8 4.6E-08 1E-12 89.4 12.8 160 76-242 1-183 (201)
145 cd01996 Alpha_ANH_like_III Thi 98.8 3.1E-08 6.7E-13 86.5 10.7 111 75-187 3-116 (154)
146 PF13899 Thioredoxin_7: Thiore 98.8 8.3E-09 1.8E-13 80.1 6.2 65 336-404 15-82 (82)
147 PRK11106 queuosine biosynthesi 98.8 8.3E-08 1.8E-12 89.0 13.8 159 75-237 3-180 (231)
148 cd00553 NAD_synthase NAD+ synt 98.8 9.8E-08 2.1E-12 90.2 14.5 160 63-238 12-180 (248)
149 cd02960 AGR Anterior Gradient 98.8 4E-08 8.7E-13 82.3 10.3 78 327-408 11-92 (130)
150 cd01999 Argininosuccinate_Synt 98.8 2.6E-08 5.6E-13 99.0 10.4 149 76-240 1-166 (385)
151 PLN00200 argininosuccinate syn 98.8 2.6E-08 5.7E-13 99.2 10.2 148 74-238 6-171 (404)
152 smart00594 UAS UAS domain. 98.8 6.6E-08 1.4E-12 81.0 11.2 98 326-426 14-121 (122)
153 TIGR00032 argG argininosuccina 98.8 5.5E-08 1.2E-12 97.0 12.1 148 75-238 1-163 (394)
154 TIGR02661 MauD methylamine deh 98.8 6E-08 1.3E-12 87.7 11.0 88 337-429 73-178 (189)
155 TIGR00342 thiazole biosynthesi 98.8 6.2E-08 1.3E-12 96.7 12.1 142 75-235 174-328 (371)
156 PF08534 Redoxin: Redoxin; In 98.8 6.8E-08 1.5E-12 83.4 10.8 77 337-414 27-133 (146)
157 PRK13820 argininosuccinate syn 98.8 3.9E-08 8.4E-13 97.8 10.0 147 74-238 3-164 (394)
158 PRK00509 argininosuccinate syn 98.8 7.7E-08 1.7E-12 95.7 12.1 145 74-238 3-167 (399)
159 PRK08384 thiamine biosynthesis 98.7 1.2E-07 2.6E-12 94.2 12.5 156 75-254 182-352 (381)
160 PRK04527 argininosuccinate syn 98.7 1.2E-07 2.6E-12 94.1 12.1 146 74-238 3-169 (400)
161 PRK13980 NAD synthetase; Provi 98.7 3.1E-07 6.8E-12 87.5 14.5 155 62-236 18-180 (265)
162 PTZ00056 glutathione peroxidas 98.7 1.2E-07 2.5E-12 86.5 10.9 44 337-380 38-81 (199)
163 PLN02399 phospholipid hydroper 98.6 2.2E-07 4.8E-12 86.4 11.1 92 337-429 98-233 (236)
164 PRK14664 tRNA-specific 2-thiou 98.6 2.4E-07 5.2E-12 91.4 11.2 154 74-237 6-177 (362)
165 PF02114 Phosducin: Phosducin; 98.6 1.2E-07 2.6E-12 89.7 8.6 107 318-429 125-237 (265)
166 PRK01565 thiamine biosynthesis 98.6 2.7E-07 5.8E-12 92.9 11.3 156 75-255 178-346 (394)
167 COG2143 Thioredoxin-related pr 98.6 1.2E-06 2.5E-11 74.1 12.1 96 329-427 33-146 (182)
168 TIGR02540 gpx7 putative glutat 98.6 4.6E-07 9.9E-12 79.0 10.2 92 337-429 21-152 (153)
169 TIGR03573 WbuX N-acetyl sugar 98.6 7.4E-07 1.6E-11 88.1 12.8 110 75-186 61-173 (343)
170 PLN02412 probable glutathione 98.6 4.8E-07 1E-11 80.2 10.3 91 337-429 28-163 (167)
171 PF06508 QueC: Queuosine biosy 98.6 2E-07 4.3E-12 85.4 8.1 177 75-253 1-196 (209)
172 cd02969 PRX_like1 Peroxiredoxi 98.6 6.6E-07 1.4E-11 79.5 11.2 92 337-429 24-151 (171)
173 COG0526 TrxA Thiol-disulfide i 98.5 4.3E-07 9.3E-12 73.6 7.8 67 338-407 32-101 (127)
174 PF13728 TraF: F plasmid trans 98.5 1.5E-06 3.2E-11 80.0 11.5 86 337-426 119-214 (215)
175 cd00340 GSH_Peroxidase Glutath 98.5 5.9E-07 1.3E-11 78.3 8.3 43 337-380 21-63 (152)
176 TIGR01626 ytfJ_HI0045 conserve 98.5 6.3E-07 1.4E-11 79.9 8.2 85 337-427 58-177 (184)
177 TIGR02196 GlrX_YruB Glutaredox 98.4 9.3E-07 2E-11 66.3 7.7 69 342-427 2-74 (74)
178 cd01994 Alpha_ANH_like_IV This 98.4 1.2E-06 2.6E-11 79.4 9.6 129 75-235 1-138 (194)
179 cd01659 TRX_superfamily Thiore 98.4 1.4E-06 3.1E-11 62.3 7.7 61 342-405 1-63 (69)
180 PRK01269 tRNA s(4)U8 sulfurtra 98.4 2.7E-06 5.8E-11 88.0 12.2 143 75-235 179-333 (482)
181 KOG2501 Thioredoxin, nucleored 98.3 1.2E-06 2.7E-11 74.9 6.6 70 337-407 32-127 (157)
182 PF01216 Calsequestrin: Calseq 98.3 5.8E-06 1.3E-10 78.8 11.2 103 318-429 34-143 (383)
183 COG2117 Predicted subunit of t 98.3 3.1E-06 6.7E-11 71.9 8.2 103 75-186 2-109 (198)
184 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 5E-06 1.1E-10 69.3 9.0 70 337-407 24-120 (124)
185 TIGR02200 GlrX_actino Glutared 98.3 5.1E-06 1.1E-10 63.0 8.1 70 342-427 2-76 (77)
186 cd03017 PRX_BCP Peroxiredoxin 98.3 4.5E-06 9.8E-11 71.2 8.6 87 337-425 22-138 (140)
187 PF03190 Thioredox_DsbH: Prote 98.2 2.7E-06 5.8E-11 74.0 6.9 79 323-407 25-114 (163)
188 PF03054 tRNA_Me_trans: tRNA m 98.2 8.3E-06 1.8E-10 80.3 10.9 157 75-236 2-186 (356)
189 TIGR03137 AhpC peroxiredoxin. 98.2 9.7E-06 2.1E-10 73.2 10.5 92 337-429 30-155 (187)
190 PF02540 NAD_synthase: NAD syn 98.2 3.7E-06 8.1E-11 78.8 7.9 163 63-241 7-174 (242)
191 PTZ00323 NAD+ synthase; Provis 98.2 2.8E-05 6.1E-10 74.7 13.8 160 64-236 36-211 (294)
192 PF13848 Thioredoxin_6: Thiore 98.2 2.6E-05 5.5E-10 69.7 12.8 104 318-428 77-184 (184)
193 PTZ00256 glutathione peroxidas 98.2 1.1E-05 2.4E-10 72.5 10.4 44 337-380 39-83 (183)
194 PF06110 DUF953: Eukaryotic pr 98.2 9.4E-06 2E-10 67.0 8.9 97 326-427 6-118 (119)
195 cd03015 PRX_Typ2cys Peroxiredo 98.2 1E-05 2.2E-10 72.0 9.9 92 337-429 28-156 (173)
196 TIGR02739 TraF type-F conjugat 98.2 1.8E-05 3.9E-10 74.2 11.4 87 338-428 150-246 (256)
197 cd01986 Alpha_ANH_like Adenine 98.2 7.9E-06 1.7E-10 66.2 7.9 44 76-119 1-47 (103)
198 COG0603 Predicted PP-loop supe 98.2 9.5E-06 2.1E-10 73.8 8.9 170 75-254 4-199 (222)
199 PRK09437 bcp thioredoxin-depen 98.2 1.9E-05 4.1E-10 68.8 10.6 77 337-414 29-138 (154)
200 cd02970 PRX_like2 Peroxiredoxi 98.1 2.1E-05 4.6E-10 67.7 9.5 45 338-382 23-68 (149)
201 COG0482 TrmU Predicted tRNA(5- 98.1 7.7E-05 1.7E-09 72.6 14.1 168 74-242 4-190 (356)
202 KOG1672 ATP binding protein [P 98.1 5.4E-06 1.2E-10 72.7 5.6 82 319-407 67-149 (211)
203 cd02991 UAS_ETEA UAS family, E 98.1 4.4E-05 9.5E-10 63.2 10.5 99 327-429 5-112 (116)
204 PRK13703 conjugal pilus assemb 98.1 4.5E-05 9.7E-10 71.2 11.6 87 338-428 143-239 (248)
205 PF02568 ThiI: Thiamine biosyn 98.1 2.9E-05 6.2E-10 70.1 10.0 141 74-235 4-161 (197)
206 KOG3425 Uncharacterized conser 98.1 2.2E-05 4.7E-10 63.5 8.1 79 326-406 13-106 (128)
207 PF07912 ERp29_N: ERp29, N-ter 98.0 0.00017 3.7E-09 59.0 13.0 104 318-428 4-117 (126)
208 KOG2603 Oligosaccharyltransfer 98.0 3.6E-05 7.7E-10 72.5 10.2 109 318-429 40-165 (331)
209 PRK10382 alkyl hydroperoxide r 98.0 6E-05 1.3E-09 67.9 11.3 93 337-430 30-156 (187)
210 PRK00522 tpx lipid hydroperoxi 98.0 4E-05 8.6E-10 67.9 9.7 88 337-427 43-166 (167)
211 TIGR02180 GRX_euk Glutaredoxin 98.0 1.5E-05 3.2E-10 61.6 6.1 59 342-406 1-63 (84)
212 KOG3414 Component of the U4/U6 98.0 0.00012 2.6E-09 59.6 11.2 99 326-428 12-118 (142)
213 PF14595 Thioredoxin_9: Thiore 98.0 2.6E-05 5.7E-10 65.8 7.7 87 337-430 40-129 (129)
214 PRK13190 putative peroxiredoxi 98.0 5.9E-05 1.3E-09 68.9 10.3 91 338-430 27-154 (202)
215 TIGR03679 arCOG00187 arCOG0018 98.0 3.2E-05 6.9E-10 71.5 8.5 129 77-236 1-137 (218)
216 cd03018 PRX_AhpE_like Peroxire 98.0 5.6E-05 1.2E-09 65.2 9.5 88 339-427 29-148 (149)
217 PF13192 Thioredoxin_3: Thiore 97.9 9E-05 1.9E-09 56.4 9.0 74 343-427 3-76 (76)
218 cd03014 PRX_Atyp2cys Peroxired 97.9 5.3E-05 1.1E-09 65.0 8.3 67 337-406 25-120 (143)
219 PRK15000 peroxidase; Provision 97.9 0.0001 2.2E-09 67.2 10.2 93 337-430 33-162 (200)
220 cd03072 PDI_b'_ERp44 PDIb' fam 97.9 0.00018 3.8E-09 59.1 10.5 101 320-429 1-107 (111)
221 KOG2805 tRNA (5-methylaminomet 97.8 0.00051 1.1E-08 64.8 14.3 162 74-237 6-193 (377)
222 PRK00876 nadE NAD synthetase; 97.8 0.00071 1.5E-08 66.0 15.7 73 62-134 20-97 (326)
223 cd02983 P5_C P5 family, C-term 97.8 0.00052 1.1E-08 58.0 12.9 105 319-429 3-114 (130)
224 PTZ00137 2-Cys peroxiredoxin; 97.8 0.00027 5.8E-09 66.8 11.3 93 337-430 97-225 (261)
225 cd03016 PRX_1cys Peroxiredoxin 97.7 0.00023 4.9E-09 65.1 9.9 90 340-430 28-154 (203)
226 cd02971 PRX_family Peroxiredox 97.7 0.00019 4.2E-09 61.0 8.3 77 337-414 21-128 (140)
227 cd01991 Asn_Synthase_B_C The C 97.7 0.0003 6.4E-09 67.1 10.1 107 73-186 15-129 (269)
228 PRK11200 grxA glutaredoxin 1; 97.6 0.00016 3.4E-09 56.3 6.7 75 341-428 2-81 (85)
229 cd02976 NrdH NrdH-redoxin (Nrd 97.6 0.00024 5.3E-09 52.8 7.5 68 342-426 2-73 (73)
230 cd03073 PDI_b'_ERp72_ERp57 PDI 97.6 0.00062 1.4E-08 55.8 10.4 100 321-430 2-111 (111)
231 PF02966 DIM1: Mitosis protein 97.6 0.0013 2.7E-08 54.6 11.9 98 326-428 9-115 (133)
232 KOG0911 Glutaredoxin-related p 97.6 4E-05 8.7E-10 69.1 3.3 67 337-407 16-82 (227)
233 cd02968 SCO SCO (an acronym fo 97.6 0.00022 4.7E-09 60.9 7.6 45 337-381 21-69 (142)
234 cd02981 PDI_b_family Protein D 97.6 0.00087 1.9E-08 53.2 10.6 88 327-428 9-96 (97)
235 PRK13599 putative peroxiredoxi 97.6 0.00046 9.9E-09 63.6 10.1 92 338-430 28-156 (215)
236 PRK00768 nadE NAD synthetase; 97.6 0.0008 1.7E-08 63.7 11.5 159 63-236 27-200 (268)
237 PRK10877 protein disulfide iso 97.6 0.0004 8.7E-09 64.8 9.3 81 337-429 106-230 (232)
238 PRK05370 argininosuccinate syn 97.5 0.00083 1.8E-08 67.2 11.6 149 73-238 11-184 (447)
239 PRK13981 NAD synthetase; Provi 97.5 0.0014 3.1E-08 69.0 14.1 156 63-234 269-433 (540)
240 PRK13189 peroxiredoxin; Provis 97.5 0.00054 1.2E-08 63.5 9.6 92 337-429 34-162 (222)
241 PRK02628 nadE NAD synthetase; 97.5 0.0011 2.4E-08 71.6 13.3 144 74-234 362-522 (679)
242 PRK13191 putative peroxiredoxi 97.5 0.0007 1.5E-08 62.4 10.2 92 338-430 33-161 (215)
243 TIGR03143 AhpF_homolog putativ 97.5 0.00049 1.1E-08 72.7 10.3 94 320-426 460-554 (555)
244 PRK15317 alkyl hydroperoxide r 97.5 0.00063 1.4E-08 71.3 10.7 93 322-427 102-195 (517)
245 PRK10606 btuE putative glutath 97.5 0.00018 3.9E-09 64.5 5.3 43 337-380 24-66 (183)
246 TIGR02183 GRXA Glutaredoxin, G 97.5 0.00057 1.2E-08 53.3 7.5 74 342-428 2-80 (86)
247 COG0519 GuaA GMP synthase, PP- 97.4 0.0032 6.9E-08 58.8 12.7 174 65-249 12-197 (315)
248 KOG3170 Conserved phosducin-li 97.4 0.0014 3.1E-08 57.9 9.4 104 318-428 91-199 (240)
249 PTZ00253 tryparedoxin peroxida 97.3 0.0016 3.5E-08 59.3 10.1 92 337-429 35-163 (199)
250 PF00462 Glutaredoxin: Glutare 97.3 0.0011 2.3E-08 47.8 6.7 55 342-406 1-58 (60)
251 PF05768 DUF836: Glutaredoxin- 97.2 0.00073 1.6E-08 52.1 5.7 78 342-427 2-81 (81)
252 PF11009 DUF2847: Protein of u 97.2 0.0022 4.8E-08 51.6 8.5 95 324-422 6-104 (105)
253 PF00764 Arginosuc_synth: Argi 97.2 0.00069 1.5E-08 67.2 6.8 156 77-245 1-169 (388)
254 TIGR00290 MJ0570_dom MJ0570-re 97.2 0.0017 3.8E-08 59.8 8.9 125 75-235 2-135 (223)
255 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.001 2.2E-08 60.5 7.1 77 337-426 76-197 (197)
256 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.0011 2.4E-08 50.7 6.3 57 342-406 2-62 (82)
257 TIGR03140 AhpF alkyl hydropero 97.2 0.0026 5.7E-08 66.6 10.8 95 321-427 102-196 (515)
258 KOG3171 Conserved phosducin-li 97.1 0.0018 3.8E-08 57.9 7.0 107 318-429 138-250 (273)
259 PF00837 T4_deiodinase: Iodoth 97.0 0.0059 1.3E-07 56.2 10.1 59 318-377 82-140 (237)
260 PF00733 Asn_synthase: Asparag 97.0 0.0048 1E-07 57.9 10.1 120 62-186 3-133 (255)
261 COG0301 ThiI Thiamine biosynth 97.0 0.0058 1.2E-07 60.5 10.5 144 75-235 177-332 (383)
262 cd03067 PDI_b_PDIR_N PDIb fami 96.9 0.0089 1.9E-07 47.1 9.0 95 326-428 10-110 (112)
263 PRK10329 glutaredoxin-like pro 96.9 0.011 2.5E-07 45.4 9.6 70 342-427 3-74 (81)
264 COG0171 NadE NAD synthase [Coe 96.9 0.013 2.7E-07 55.6 11.7 165 62-239 13-188 (268)
265 PF07449 HyaE: Hydrogenase-1 e 96.8 0.003 6.4E-08 51.1 6.0 94 318-419 9-104 (107)
266 TIGR02194 GlrX_NrdH Glutaredox 96.8 0.0035 7.6E-08 46.9 5.8 66 343-424 2-70 (72)
267 cd02066 GRX_family Glutaredoxi 96.8 0.0053 1.2E-07 45.1 6.7 55 342-406 2-59 (72)
268 KOG2840 Uncharacterized conser 96.8 0.0006 1.3E-08 64.8 1.6 159 73-235 51-231 (347)
269 COG0137 ArgG Argininosuccinate 96.7 0.0074 1.6E-07 59.0 8.4 57 74-131 5-64 (403)
270 TIGR00289 conserved hypothetic 96.7 0.0085 1.8E-07 55.3 8.5 57 75-132 2-65 (222)
271 TIGR01536 asn_synth_AEB aspara 96.7 0.016 3.5E-07 59.9 11.6 106 74-187 254-370 (467)
272 TIGR02190 GlrX-dom Glutaredoxi 96.7 0.0065 1.4E-07 46.4 6.5 71 338-426 6-78 (79)
273 PRK11657 dsbG disulfide isomer 96.6 0.014 3E-07 55.2 9.8 85 337-427 116-249 (251)
274 TIGR02181 GRX_bact Glutaredoxi 96.6 0.0053 1.2E-07 46.7 5.5 55 342-406 1-58 (79)
275 cd01984 AANH_like Adenine nucl 96.6 0.0089 1.9E-07 46.3 6.7 53 76-134 1-57 (86)
276 cd03418 GRX_GRXb_1_3_like Glut 96.5 0.0095 2.1E-07 44.7 6.4 55 342-406 2-60 (75)
277 TIGR02189 GlrX-like_plant Glut 96.5 0.0074 1.6E-07 48.4 6.0 55 342-406 10-70 (99)
278 cd03027 GRX_DEP Glutaredoxin ( 96.4 0.011 2.5E-07 44.2 6.6 54 342-406 3-60 (73)
279 PF13848 Thioredoxin_6: Thiore 96.4 0.031 6.7E-07 49.6 10.3 68 355-429 7-74 (184)
280 PHA03050 glutaredoxin; Provisi 96.4 0.0069 1.5E-07 49.4 5.2 58 342-406 15-78 (108)
281 cd02972 DsbA_family DsbA famil 96.3 0.014 3E-07 45.5 6.6 60 342-403 1-91 (98)
282 COG1365 Predicted ATPase (PP-l 96.2 0.029 6.3E-07 50.4 8.8 138 74-237 61-204 (255)
283 TIGR03143 AhpF_homolog putativ 96.2 0.03 6.5E-07 59.3 10.7 87 338-429 365-453 (555)
284 cd03029 GRX_hybridPRX5 Glutare 96.2 0.02 4.4E-07 42.7 6.6 67 342-426 3-71 (72)
285 COG2102 Predicted ATPases of P 95.8 0.031 6.7E-07 50.9 7.2 126 75-235 2-136 (223)
286 COG0695 GrxC Glutaredoxin and 95.8 0.036 7.7E-07 42.5 6.5 52 342-401 3-59 (80)
287 TIGR00365 monothiol glutaredox 95.7 0.057 1.2E-06 43.0 7.6 59 338-406 11-76 (97)
288 KOG1622 GMP synthase [Nucleoti 95.6 0.058 1.3E-06 53.7 8.5 72 63-134 219-294 (552)
289 cd03028 GRX_PICOT_like Glutare 95.6 0.051 1.1E-06 42.6 6.8 59 338-406 7-72 (90)
290 PRK10638 glutaredoxin 3; Provi 95.5 0.044 9.6E-07 42.1 6.1 54 342-406 4-61 (83)
291 cd03069 PDI_b_ERp57 PDIb famil 95.3 0.27 6E-06 39.5 10.3 89 326-429 9-103 (104)
292 PF01902 ATP_bind_4: ATP-bindi 95.2 0.023 4.9E-07 52.4 4.3 57 75-132 2-65 (218)
293 cd03066 PDI_b_Calsequestrin_mi 95.2 0.51 1.1E-05 37.8 11.7 97 320-429 2-100 (102)
294 KOG1752 Glutaredoxin and relat 95.2 0.11 2.4E-06 41.9 7.6 62 337-406 12-76 (104)
295 cd03023 DsbA_Com1_like DsbA fa 95.1 0.049 1.1E-06 46.6 5.8 33 337-369 4-36 (154)
296 COG1331 Highly conserved prote 94.9 0.059 1.3E-06 56.7 6.7 81 321-407 29-120 (667)
297 PRK10824 glutaredoxin-4; Provi 94.3 0.16 3.4E-06 41.8 6.6 59 338-406 14-79 (115)
298 COG1225 Bcp Peroxiredoxin [Pos 94.2 0.69 1.5E-05 40.2 10.6 92 337-429 29-155 (157)
299 KOG2640 Thioredoxin [Function 94.1 0.026 5.6E-07 53.7 1.7 88 336-429 74-161 (319)
300 PF13462 Thioredoxin_4: Thiore 93.5 0.25 5.4E-06 42.7 6.8 42 337-379 11-54 (162)
301 cd03019 DsbA_DsbA DsbA family, 93.0 0.16 3.4E-06 44.8 4.9 38 337-375 14-51 (178)
302 COG0367 AsnB Asparagine syntha 93.0 0.57 1.2E-05 49.4 9.6 61 73-134 230-294 (542)
303 TIGR03108 eps_aminotran_1 exos 92.9 0.68 1.5E-05 49.9 10.5 107 74-187 259-371 (628)
304 PRK12759 bifunctional gluaredo 92.9 0.24 5.3E-06 50.3 6.7 51 342-401 4-66 (410)
305 PTZ00062 glutaredoxin; Provisi 92.7 0.42 9.1E-06 43.6 7.2 59 338-406 112-177 (204)
306 PLN02549 asparagine synthase ( 92.4 0.78 1.7E-05 48.7 9.8 58 74-134 226-295 (578)
307 cd03013 PRX5_like Peroxiredoxi 92.2 0.34 7.3E-06 42.1 5.8 44 338-381 29-75 (155)
308 TIGR03104 trio_amidotrans aspa 92.0 1.3 2.9E-05 47.2 11.2 106 74-187 261-377 (589)
309 PTZ00077 asparagine synthetase 91.2 1 2.2E-05 47.9 9.1 107 74-187 238-363 (586)
310 PRK10954 periplasmic protein d 90.2 0.37 8.1E-06 44.0 4.2 39 338-377 37-78 (207)
311 cd02978 KaiB_like KaiB-like fa 89.5 1.6 3.4E-05 32.7 6.2 63 341-405 3-65 (72)
312 PRK09431 asnB asparagine synth 89.3 1.7 3.8E-05 45.9 8.9 107 74-187 228-355 (554)
313 cd03068 PDI_b_ERp72 PDIb famil 88.8 7.6 0.00016 31.3 10.5 91 325-428 8-106 (107)
314 PLN02339 NAD+ synthase (glutam 88.5 2 4.4E-05 46.7 9.0 66 69-134 343-448 (700)
315 cd03031 GRX_GRX_like Glutaredo 87.8 1.8 3.9E-05 37.3 6.5 55 342-406 2-69 (147)
316 KOG1706 Argininosuccinate synt 85.2 5.4 0.00012 38.2 8.5 53 74-128 6-59 (412)
317 KOG0573 Asparagine synthase [A 84.1 2.8 6E-05 42.2 6.5 53 74-126 251-317 (520)
318 PHA03075 glutaredoxin-like pro 84.1 1.7 3.7E-05 35.3 4.1 30 339-368 2-31 (123)
319 PRK09301 circadian clock prote 83.3 6.7 0.00015 31.4 7.1 74 337-414 4-77 (103)
320 cd03060 GST_N_Omega_like GST_N 82.3 7.2 0.00016 28.5 6.8 52 343-400 2-53 (71)
321 TIGR02654 circ_KaiB circadian 82.0 9 0.0002 29.7 7.2 72 339-414 3-74 (87)
322 KOG2507 Ubiquitin regulatory p 81.8 13 0.00029 37.1 10.0 101 327-429 7-110 (506)
323 PF10281 Ish1: Putative stress 79.9 1.7 3.7E-05 28.0 2.3 22 220-241 3-24 (38)
324 KOG4277 Uncharacterized conser 79.3 12 0.00026 35.8 8.5 127 284-428 97-229 (468)
325 cd03074 PDI_b'_Calsequestrin_C 76.9 38 0.00082 27.4 10.7 107 321-429 4-119 (120)
326 cd02974 AhpF_NTD_N Alkyl hydro 76.7 34 0.00074 26.9 9.3 75 338-429 18-93 (94)
327 cd02990 UAS_FAF1 UAS family, F 76.2 47 0.001 28.2 11.3 90 336-428 19-131 (136)
328 PF09673 TrbC_Ftype: Type-F co 76.2 18 0.00039 29.5 7.9 71 325-404 10-80 (113)
329 PRK15317 alkyl hydroperoxide r 74.4 19 0.00041 37.8 9.6 77 337-429 17-93 (517)
330 cd02977 ArsC_family Arsenate R 74.4 4 8.7E-05 32.7 3.6 77 343-428 2-85 (105)
331 TIGR03140 AhpF alkyl hydropero 74.0 21 0.00044 37.5 9.7 78 337-429 17-94 (515)
332 cd03041 GST_N_2GST_N GST_N fam 73.1 26 0.00055 26.0 7.6 71 342-428 2-75 (77)
333 PF09822 ABC_transp_aux: ABC-t 70.4 76 0.0016 30.0 12.0 74 317-395 6-88 (271)
334 COG0386 BtuE Glutathione perox 68.8 64 0.0014 28.0 9.6 44 337-381 24-67 (162)
335 PF13417 GST_N_3: Glutathione 68.4 34 0.00073 25.2 7.3 69 344-428 1-69 (75)
336 PF07689 KaiB: KaiB domain; I 68.1 2.8 6.2E-05 32.2 1.3 55 345-401 3-57 (82)
337 cd03059 GST_N_SspA GST_N famil 67.5 12 0.00027 27.1 4.7 70 343-428 2-71 (73)
338 KOG2792 Putative cytochrome C 66.7 37 0.0008 31.9 8.3 89 337-428 138-273 (280)
339 COG4545 Glutaredoxin-related p 66.3 11 0.00024 28.2 3.9 55 343-406 5-74 (85)
340 PF13462 Thioredoxin_4: Thiore 66.2 9 0.00019 32.8 4.3 37 384-428 126-162 (162)
341 PF06053 DUF929: Domain of unk 64.5 18 0.0004 33.9 6.1 34 336-369 56-89 (249)
342 TIGR02742 TrbC_Ftype type-F co 64.2 31 0.00066 29.0 6.8 71 326-406 12-82 (130)
343 cd03036 ArsC_like Arsenate Red 64.2 9.6 0.00021 30.9 3.8 78 343-428 2-86 (111)
344 cd03051 GST_N_GTT2_like GST_N 63.4 13 0.00028 26.9 4.1 53 343-401 2-57 (74)
345 cd00570 GST_N_family Glutathio 63.2 30 0.00066 23.9 6.1 53 343-401 2-55 (71)
346 cd03040 GST_N_mPGES2 GST_N fam 63.1 34 0.00073 25.1 6.4 72 342-428 2-74 (77)
347 TIGR01617 arsC_related transcr 63.1 13 0.00029 30.3 4.5 33 343-382 2-34 (117)
348 PRK01655 spxA transcriptional 62.6 12 0.00026 31.4 4.2 34 342-382 2-35 (131)
349 PF02677 DUF208: Uncharacteriz 62.2 1.1E+02 0.0025 27.1 11.0 91 84-177 9-108 (176)
350 PF13743 Thioredoxin_5: Thiore 61.1 16 0.00034 32.4 4.9 32 344-376 2-33 (176)
351 PRK06702 O-acetylhomoserine am 61.1 72 0.0016 32.7 10.3 73 59-133 60-133 (432)
352 KOG2594 Uncharacterized conser 60.8 23 0.0005 34.8 6.1 80 156-237 177-265 (396)
353 COG2761 FrnE Predicted dithiol 59.8 17 0.00038 33.5 4.9 39 384-429 174-212 (225)
354 COG3531 Predicted protein-disu 58.1 19 0.00041 32.4 4.7 42 384-428 164-207 (212)
355 cd03035 ArsC_Yffb Arsenate Red 57.4 11 0.00023 30.4 2.9 33 343-382 2-34 (105)
356 COG3634 AhpF Alkyl hydroperoxi 57.4 31 0.00067 34.1 6.4 81 337-427 115-195 (520)
357 TIGR00269 conserved hypothetic 56.9 9.3 0.0002 30.7 2.4 25 214-238 3-27 (104)
358 COG1999 Uncharacterized protei 56.5 27 0.00059 31.8 5.7 51 337-387 66-122 (207)
359 KOG0912 Thiol-disulfide isomer 56.1 36 0.00077 32.9 6.4 138 275-428 55-206 (375)
360 PF01323 DSBA: DSBA-like thior 55.3 20 0.00044 31.6 4.7 37 384-427 157-193 (193)
361 PF13743 Thioredoxin_5: Thiore 54.5 10 0.00022 33.6 2.6 19 384-403 137-155 (176)
362 COG3019 Predicted metal-bindin 53.9 31 0.00066 29.3 5.0 73 340-428 26-102 (149)
363 PRK12559 transcriptional regul 53.8 22 0.00049 29.8 4.4 34 342-382 2-35 (131)
364 COG0626 MetC Cystathionine bet 53.1 1.4E+02 0.0029 30.3 10.4 76 59-136 62-138 (396)
365 PF01216 Calsequestrin: Calseq 52.3 2.4E+02 0.0052 27.9 11.4 99 318-429 146-246 (383)
366 cd03032 ArsC_Spx Arsenate Redu 52.2 27 0.00057 28.5 4.5 34 342-382 2-35 (115)
367 cd03037 GST_N_GRX2 GST_N famil 52.0 22 0.00047 25.7 3.6 68 344-427 3-70 (71)
368 PRK09028 cystathionine beta-ly 51.8 1.5E+02 0.0033 29.9 10.8 71 62-134 63-134 (394)
369 PF02630 SCO1-SenC: SCO1/SenC; 51.7 37 0.00081 29.9 5.7 45 337-381 51-98 (174)
370 PF07796 DUF1638: Protein of u 50.1 40 0.00086 29.5 5.6 43 99-141 119-162 (166)
371 cd03055 GST_N_Omega GST_N fami 49.2 1E+02 0.0022 23.5 7.2 54 342-401 19-72 (89)
372 TIGR01324 cysta_beta_ly_B cyst 48.8 1.8E+02 0.0038 29.2 10.7 72 61-134 51-123 (377)
373 PRK08114 cystathionine beta-ly 48.0 1.5E+02 0.0033 29.9 10.1 74 59-134 61-135 (395)
374 PHA02053 hypothetical protein 47.9 49 0.0011 26.1 4.9 15 76-90 82-97 (115)
375 PF09623 Cas_NE0113: CRISPR-as 47.8 94 0.002 28.8 7.8 48 37-89 81-129 (224)
376 cd03023 DsbA_Com1_like DsbA fa 46.5 27 0.00058 29.3 3.8 36 384-427 119-154 (154)
377 cd03045 GST_N_Delta_Epsilon GS 46.5 27 0.0006 25.3 3.5 52 343-400 2-56 (74)
378 COG0278 Glutaredoxin-related p 44.4 65 0.0014 25.7 5.2 52 347-406 27-80 (105)
379 PF04592 SelP_N: Selenoprotein 44.3 41 0.00089 31.2 4.8 47 336-382 24-73 (238)
380 COG1651 DsbG Protein-disulfide 44.0 47 0.001 30.7 5.4 32 338-369 84-115 (244)
381 PF01053 Cys_Met_Meta_PP: Cys/ 43.6 1.6E+02 0.0034 29.7 9.3 82 59-142 54-137 (386)
382 PF13778 DUF4174: Domain of un 42.9 1.9E+02 0.004 23.7 9.8 81 346-429 16-111 (118)
383 PF01323 DSBA: DSBA-like thior 42.2 48 0.001 29.1 5.0 38 341-378 1-38 (193)
384 PF00255 GSHPx: Glutathione pe 41.6 82 0.0018 25.5 5.7 45 337-382 20-64 (108)
385 PRK05967 cystathionine beta-ly 41.6 2.6E+02 0.0056 28.3 10.6 75 59-135 63-138 (395)
386 PRK08574 cystathionine gamma-s 40.8 2.4E+02 0.0053 28.2 10.3 78 62-142 55-133 (385)
387 COG0450 AhpC Peroxiredoxin [Po 40.1 2E+02 0.0043 26.0 8.2 92 338-430 33-161 (194)
388 cd03024 DsbA_FrnE DsbA family, 40.1 41 0.00088 29.9 4.2 36 384-426 165-200 (201)
389 COG1636 Uncharacterized protei 40.0 2.6E+02 0.0056 25.2 8.8 92 82-175 12-112 (204)
390 PRK13344 spxA transcriptional 39.6 52 0.0011 27.6 4.4 34 342-382 2-35 (132)
391 PRK07050 cystathionine beta-ly 39.5 2.6E+02 0.0057 28.1 10.3 73 60-134 65-138 (394)
392 TIGR02826 RNR_activ_nrdG3 anae 39.4 91 0.002 26.7 6.0 48 77-131 64-115 (147)
393 KOG3425 Uncharacterized conser 36.8 1.1E+02 0.0024 25.4 5.6 47 62-108 12-75 (128)
394 PRK08133 O-succinylhomoserine 36.4 3.7E+02 0.0079 27.0 10.8 72 61-134 62-134 (390)
395 COG0468 RecA RecA/RadA recombi 36.1 1.2E+02 0.0026 29.1 6.8 60 75-136 64-124 (279)
396 KOG0571 Asparagine synthase (g 35.4 1E+02 0.0023 31.3 6.3 58 74-131 226-290 (543)
397 cd03019 DsbA_DsbA DsbA family, 34.8 58 0.0013 28.1 4.2 20 384-406 133-152 (178)
398 cd03025 DsbA_FrnE_like DsbA fa 34.5 49 0.0011 29.1 3.7 28 342-369 3-30 (193)
399 PF12105 SpoU_methylas_C: SpoU 34.0 10 0.00023 26.9 -0.6 27 218-244 23-49 (57)
400 KOG0373 Serine/threonine speci 33.0 1.5E+02 0.0033 27.3 6.4 74 103-180 82-164 (306)
401 cd03026 AhpF_NTD_C TRX-GRX-lik 32.7 2.3E+02 0.0049 21.8 6.8 58 90-149 5-65 (89)
402 PRK08134 O-acetylhomoserine am 32.1 4.1E+02 0.0088 27.2 10.4 73 60-134 64-137 (433)
403 KOG1364 Predicted ubiquitin re 32.0 3.4E+02 0.0074 26.8 9.0 51 376-428 137-187 (356)
404 KOG1651 Glutathione peroxidase 31.9 1.8E+02 0.0038 25.6 6.4 45 337-381 33-77 (171)
405 KOG2046 Calponin [Cytoskeleton 31.8 1E+02 0.0022 27.7 5.1 76 53-129 19-101 (193)
406 PRK07582 cystathionine gamma-l 31.6 2.8E+02 0.0061 27.5 9.0 70 62-133 53-122 (366)
407 TIGR03642 cas_csx13 CRISPR-ass 31.4 1.5E+02 0.0033 24.7 5.8 46 39-89 60-107 (124)
408 KOG2316 Predicted ATPase (PP-l 30.9 56 0.0012 30.0 3.3 27 76-102 3-30 (277)
409 cd01987 USP_OKCHK USP domain i 30.7 2.7E+02 0.0059 22.1 10.0 56 75-130 1-67 (124)
410 TIGR01326 OAH_OAS_sulfhy OAH/O 29.9 4.5E+02 0.0097 26.6 10.3 70 62-133 59-129 (418)
411 PRK06234 methionine gamma-lyas 29.6 3.3E+02 0.0073 27.3 9.3 71 61-133 65-136 (400)
412 PRK08248 O-acetylhomoserine am 29.6 3.2E+02 0.0069 27.9 9.1 71 61-133 65-136 (431)
413 PRK07812 O-acetylhomoserine am 29.5 3.2E+02 0.007 28.0 9.2 71 60-132 69-140 (436)
414 PRK07810 O-succinylhomoserine 29.4 3.4E+02 0.0073 27.4 9.2 73 60-134 70-143 (403)
415 PRK10954 periplasmic protein d 29.2 93 0.002 28.1 4.7 20 384-406 157-176 (207)
416 KOG1422 Intracellular Cl- chan 28.9 2.8E+02 0.0062 25.4 7.4 63 349-428 20-83 (221)
417 cd03146 GAT1_Peptidase_E Type 28.8 2.7E+02 0.0059 25.2 7.7 105 77-181 2-120 (212)
418 PF08806 Sep15_SelM: Sep15/Sel 28.4 62 0.0013 24.5 2.8 34 395-428 41-74 (78)
419 PRK13730 conjugal transfer pil 28.3 1E+02 0.0022 28.0 4.5 37 384-424 152-188 (212)
420 PRK05939 hypothetical protein; 27.9 4.8E+02 0.01 26.2 10.0 73 59-134 46-119 (397)
421 cd03030 GRX_SH3BGR Glutaredoxi 27.8 2E+02 0.0044 22.4 5.8 41 346-387 5-45 (92)
422 PRK06434 cystathionine gamma-l 27.7 4E+02 0.0087 26.7 9.4 75 59-135 63-138 (384)
423 COG2516 Biotin synthase-relate 27.2 29 0.00062 33.7 1.0 33 235-267 274-307 (339)
424 KOG0053 Cystathionine beta-lya 27.1 5.5E+02 0.012 26.1 9.9 72 59-135 76-151 (409)
425 PRK08045 cystathionine gamma-s 26.2 4.8E+02 0.01 26.1 9.7 68 62-131 54-122 (386)
426 PF10561 UPF0565: Uncharacteri 26.2 86 0.0019 30.4 4.0 54 75-131 195-271 (303)
427 cd03033 ArsC_15kD Arsenate Red 25.7 87 0.0019 25.5 3.4 21 342-362 2-22 (113)
428 PF08423 Rad51: Rad51; InterP 25.7 1.6E+02 0.0035 27.6 5.8 65 60-126 22-98 (256)
429 COG1751 Uncharacterized conser 25.7 2.1E+02 0.0046 24.7 5.7 56 74-130 29-88 (186)
430 cd01399 GlcN6P_deaminase GlcN6 24.8 1.3E+02 0.0029 27.4 5.0 65 62-127 8-86 (232)
431 cd03056 GST_N_4 GST_N family, 24.8 92 0.002 22.2 3.2 53 343-401 2-57 (73)
432 TIGR02584 cas_NE0113 CRISPR-as 24.6 2.2E+02 0.0049 25.9 6.0 65 40-109 90-160 (209)
433 TIGR01325 O_suc_HS_sulf O-succ 24.3 5.5E+02 0.012 25.5 9.7 71 61-133 55-126 (380)
434 PF06953 ArsD: Arsenical resis 23.8 2.2E+02 0.0048 23.7 5.5 57 365-427 34-99 (123)
435 COG1651 DsbG Protein-disulfide 23.8 1.1E+02 0.0023 28.3 4.1 38 384-429 205-242 (244)
436 PRK11081 tRNA guanosine-2'-O-m 23.3 54 0.0012 30.5 2.0 29 217-245 186-214 (229)
437 PRK05968 hypothetical protein; 22.8 6.8E+02 0.015 25.0 10.0 71 62-134 65-136 (389)
438 PRK07049 methionine gamma-lyas 22.0 5.6E+02 0.012 26.1 9.3 68 62-131 85-153 (427)
439 PF04134 DUF393: Protein of un 21.9 1.2E+02 0.0025 24.2 3.6 57 345-406 2-61 (114)
440 PF08821 CGGC: CGGC domain; I 21.6 2.4E+02 0.0053 22.7 5.2 63 68-130 29-104 (107)
441 PRK07811 cystathionine gamma-s 21.4 6E+02 0.013 25.3 9.3 70 62-133 63-133 (388)
442 KOG4435 Predicted lipid kinase 21.4 89 0.0019 31.4 3.1 57 210-269 224-280 (535)
443 TIGR01328 met_gam_lyase methio 21.2 8.3E+02 0.018 24.4 10.9 73 60-134 59-132 (391)
444 COG2515 Acd 1-aminocyclopropan 21.2 4.6E+02 0.01 25.5 7.7 67 61-127 168-240 (323)
445 cd03025 DsbA_FrnE_like DsbA fa 21.1 81 0.0018 27.7 2.6 22 384-406 159-180 (193)
446 cd03049 GST_N_3 GST_N family, 21.0 2.1E+02 0.0045 20.4 4.5 54 344-401 3-56 (73)
447 cd06130 DNA_pol_III_epsilon_li 21.0 2E+02 0.0043 24.2 5.0 48 60-107 63-112 (156)
448 TIGR02080 O_succ_thio_ly O-suc 20.5 6.7E+02 0.014 25.0 9.4 69 62-132 53-122 (382)
449 PRK11121 nrdG anaerobic ribonu 20.5 1.9E+02 0.0042 24.8 4.8 46 76-122 67-121 (154)
450 cd00293 USP_Like Usp: Universa 20.0 4.2E+02 0.0091 20.5 10.4 35 75-109 1-40 (130)
451 PRK06767 methionine gamma-lyas 20.0 8.7E+02 0.019 24.1 10.9 69 62-132 63-132 (386)
No 1
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=100.00 E-value=3.1e-91 Score=697.24 Aligned_cols=376 Identities=79% Similarity=1.356 Sum_probs=336.8
Q ss_pred hhhHHHHHHhccCCCHHHHHHHHHHHcCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhC
Q 042284 46 HEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYG 125 (430)
Q Consensus 46 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~g 125 (430)
..+++.++++|+.++|+++|+|+++.|++++++++|||+|+++|||+.+.+++++|||+|||++|||||+|++++.++||
T Consensus 88 ~~~l~~l~~~l~~~~~~eil~~a~~~f~~~iavasSG~edsvLlhl~~~~~~~ipV~flDTG~lFpETy~~~d~v~~~yg 167 (463)
T TIGR00424 88 VEDFEKLAKKLENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKQYG 167 (463)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCEEEEeccHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 55789999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecCCCCcc
Q 042284 126 IRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGI 205 (430)
Q Consensus 126 l~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~ 205 (430)
++++++.|+....+++...+|.+.|+.+++++||.++|++||+++++++++||+|+||+||+++|+.++++++|+.+++.
T Consensus 168 l~l~~~~p~~~~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~~~~awitG~Rr~Qs~~tRa~~~~ve~d~~~~~~ 247 (463)
T TIGR00424 168 IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGL 247 (463)
T ss_pred CceEEECCCcchHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHHhCCcEEeeeccccCccccccCCccccccccccc
Confidence 99999999877677777888998888888999999999999999999999999999999995479999999999876655
Q ss_pred cCCCCCeEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCCCCCCccccCCCcCCCCCcccccCCCCCc
Q 042284 206 DGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHNGNI 285 (430)
Q Consensus 206 ~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~grw~~~~~~~~e~g~~~~~i 285 (430)
++++++++|+|||++||.+|||.||++|+|||||||++||+||||++||+|+.+|+++|+|||||++..|+|||||..++
T Consensus 248 ~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~LP~npL~~~GY~SIGC~pCT~pv~~ged~RaGRW~w~~~~k~ECGlH~~~~ 327 (463)
T TIGR00424 248 DGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 327 (463)
T ss_pred ccCCCceEEEeecccCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCc
Confidence 55556699999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ccccchhhhccCCCccccccCCCCCCCCCCCCCCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHH
Q 042284 286 KQEELSQHININGNGVAQHTNGSAPASDLFNSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAE 365 (430)
Q Consensus 286 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~ 365 (430)
..... +............+++.+..|++|+.+||+.+++..+.+++|||+||||||++|+.|.|.|+++++
T Consensus 328 ~~~~~---------~~~~~~~~~~~~~dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~ 398 (463)
T TIGR00424 328 KEETL---------DGAVNGNGSDAVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAE 398 (463)
T ss_pred ccccc---------chhhhhccccccccccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHH
Confidence 43321 111233456678899988999999999999998656789999999999999999999999999999
Q ss_pred HHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHhC
Q 042284 366 QLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNALR 430 (430)
Q Consensus 366 ~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~~ 430 (430)
++++..+.|++||++.+...++.++|+|.++||+++|++|......|.++.++.+.|..||+.++
T Consensus 399 ~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~~ 463 (463)
T TIGR00424 399 KLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLLR 463 (463)
T ss_pred HhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhhC
Confidence 99874589999999976234542689999999999999997667889865799999999999874
No 2
>PLN02309 5'-adenylylsulfate reductase
Probab=100.00 E-value=3.4e-91 Score=697.00 Aligned_cols=374 Identities=79% Similarity=1.356 Sum_probs=341.1
Q ss_pred hhhHHHHHHhccCCCHHHHHHHHHHHcCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhC
Q 042284 46 HEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYG 125 (430)
Q Consensus 46 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~g 125 (430)
..+++.||++|+.++|+++|+|+++.|++++++++|||+|+++|||+.+.+++++|||+|||++|||||+|++++.++||
T Consensus 83 ~~dl~~ln~~l~~~~~~eil~~a~~~~~~~ia~~~SG~ed~vll~l~~~~~~~ipV~flDTG~lfpETy~~~d~v~~~yg 162 (457)
T PLN02309 83 VEDFEKLAKELENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHYG 162 (457)
T ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecCCCCcc
Q 042284 126 IRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGI 205 (430)
Q Consensus 126 l~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~ 205 (430)
++++++.|+....+++...+|++.|+.+++++||.++|++||+|+++++++||+|+||+||.+.|+.++++++|+.|++.
T Consensus 163 l~i~~~~P~~~~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~~~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~ 242 (457)
T PLN02309 163 IRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFEGL 242 (457)
T ss_pred CceEEECCCcchHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHhhCCEEEEeeccccCccccccCCeeeeccccccc
Confidence 99999999988788888889998888878999999999999999999999999999999995479999999999877766
Q ss_pred cCCCCCeEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCCCCCCccccCCCcCCCCCcccccCCCCCc
Q 042284 206 DGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHNGNI 285 (430)
Q Consensus 206 ~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~grw~~~~~~~~e~g~~~~~i 285 (430)
+++.++++|+|||++||..|||.||++|+|||||||++||+||||++||+|+.+|+++|+|||||++..|+|||||..++
T Consensus 243 ~~~~~~~lKvnPl~~Wt~~dVw~Yi~~~~lP~npL~~~GY~SIGC~pCT~pv~~g~~~RaGRw~w~~~~k~ECGlH~~~~ 322 (457)
T PLN02309 243 DGGPGSLVKWNPLANVTGNEVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 322 (457)
T ss_pred ccCCCCeeEEcccccCCHHHHHHHHHHcCCCCCcchhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCcccccCCCCCc
Confidence 66667799999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccccchhhhccCCCccccccCCCCCCCCCCCCCCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHH
Q 042284 286 KQEELSQHININGNGVAQHTNGSAPASDLFNSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAE 365 (430)
Q Consensus 286 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~ 365 (430)
+... +.....++....++++++..|++|+.++|+++++..+.++++||+||||||++|+.|.|.|+++++
T Consensus 323 ~~~~----------~~~~~~~~~~~~~dl~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~ 392 (457)
T PLN02309 323 KEED----------NGAANDNGNAAVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAE 392 (457)
T ss_pred cccc----------ccccccccccccccccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHH
Confidence 5433 111334466777899988999999999999998766789999999999999999999999999999
Q ss_pred HHcCCCeEEEEEEcC-CCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHhC
Q 042284 366 QLEGMGVKVGKFRAD-GDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNALR 430 (430)
Q Consensus 366 ~~~~~~v~~~~Vd~~-~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~~ 430 (430)
.+++.++.|++||++ .+ .+++.++|+|.++||+++|++|....+.|.++.++.+.|++||++++
T Consensus 393 ~~~~~~V~f~kVD~d~~~-~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~~ 457 (457)
T PLN02309 393 KLAGSGVKVAKFRADGDQ-KEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSLR 457 (457)
T ss_pred HhccCCeEEEEEECCCcc-hHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHhC
Confidence 998757999999999 65 78882369999999999999998778899876799999999999875
No 3
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=100.00 E-value=3.7e-61 Score=444.71 Aligned_cols=219 Identities=30% Similarity=0.470 Sum_probs=194.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhcC-CCcEEEEecCCCCCHHHHHHHHHHHHHhC--
Q 042284 50 EKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLTG-RPFRVFSLDTGRLNPETHQFFDTVEKHYG-- 125 (430)
Q Consensus 50 ~~l~~~l~~~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~~-~~i~vi~~DTg~~fpet~~~~~~~~~~~g-- 125 (430)
++||++++.++++++|+|+++.|+++++++|||||||+|| ||+.++. ++++|||+|||.+||||++|++++.++||
T Consensus 2 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~ 81 (226)
T TIGR02057 2 DELNEQLEKLTPQEIIAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQTLTLKDELTKKYYQT 81 (226)
T ss_pred hhHHHhhccCCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCCCHHHHHHHHHHHHHhCCc
Confidence 5799999999999999999999998899999999999665 9999988 89999999999999999999999999999
Q ss_pred CcEEEEccCchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcC--ceEEEeeeccCCcccccCCCeeeecCCCC
Q 042284 126 IRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGL--RAWITGQRKDQSPGTRAEIPVVQIDTSFE 203 (430)
Q Consensus 126 l~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~d~~~~ 203 (430)
+++.++.|... ...+....|...+ ..+..+||.++|++||+++++++ ++||+|+|++||. .|+.++.++.|..
T Consensus 82 l~v~~~~~~~~-~~~~~~~~G~~~~-~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~-~Ra~~~~~~~d~~-- 156 (226)
T TIGR02057 82 LNLYKYDGCES-EADFEAKYGKLLW-QKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGS-ARANLPVIEIDEQ-- 156 (226)
T ss_pred eEEEEeCCchh-HHHHHHhcCCCcc-ccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCc-cccCCccccccCC--
Confidence 55555555443 3444556676544 45678999999999999999985 5899999999997 9999999887643
Q ss_pred cccCCCCCeEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCCCCCCccccCCCcCCCCCcccccCC
Q 042284 204 GIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 281 (430)
Q Consensus 204 ~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~grw~~~~~~~~e~g~~ 281 (430)
++.++++||++|++.|||.||++++|||||||++||+||||++||+|+.+|+++|+|||| +..|+|||||
T Consensus 157 ------~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~npLY~~GY~siGc~~cT~~v~~~~~~R~gRw~--~~~~~eCglh 226 (226)
T TIGR02057 157 ------NGILKVNPLIDWTFEQVYQYLDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK--GKLKTECGIH 226 (226)
T ss_pred ------CCeEEEeehhhCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCcCCCCCCCCCccCccCC--CCCCCCCCCC
Confidence 469999999999999999999999999999999999999999999999999999999984 5558999999
No 4
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-61 Score=417.18 Aligned_cols=233 Identities=54% Similarity=0.872 Sum_probs=223.5
Q ss_pred ChhhHHHHHHhccCCCHHHHHHHHHHHcCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHh
Q 042284 45 DHEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHY 124 (430)
Q Consensus 45 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~ 124 (430)
..++++.+|++|+.++|++||.|++..|++.+.++|||..|-++++++...+.+++++|+|||.+||||+.+.+.+.++|
T Consensus 18 ~~E~~e~l~kqL~~~sP~eIm~~al~tf~~~~q~a~~G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~VekkY 97 (261)
T KOG0189|consen 18 EVEDLEELNKQLENLSPQEIMDWALETFPNLFQTAASGLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKKY 97 (261)
T ss_pred cHHHHHHHHHHHhhCCHHHHHHHHHHHhhhHHHHHhccccchHHHHHHHHcCCCceeEEeeccccChHHHHHHHHHHHhc
Confidence 56779999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred C-CcEEEEccCchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcC--ceEEEeeeccCCcccccCCCeeeecCC
Q 042284 125 G-IRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGL--RAWITGQRKDQSPGTRAEIPVVQIDTS 201 (430)
Q Consensus 125 g-l~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~d~~ 201 (430)
| ++|+++.|+....+...+.+|...+|+++...||+++|++|++|+++++ .+||||.|++|+ +.|..++++..|+.
T Consensus 98 ~~i~I~~~~pd~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~-gtRselpiVqvD~~ 176 (261)
T KOG0189|consen 98 GNIRIHVYFPDAVEVEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQG-GTRSELPIVQVDPV 176 (261)
T ss_pred CceEEEEEcchhHHHHHHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccCC-CcccccceEEecCc
Confidence 9 8999999999989999999999999999999999999999999999988 799999999999 59999999999987
Q ss_pred CCcccCCCCCeEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCCCCCCccccCCCcCCCCCcccccCC
Q 042284 202 FEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 281 (430)
Q Consensus 202 ~~~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~grw~~~~~~~~e~g~~ 281 (430)
| +++|+||+++|+..|||.||+.+++|||.|.+.||+||||+|||+||++|++||+|||||+ +|+|||||
T Consensus 177 f--------ellK~NPlaN~~~~dV~nyi~t~nVP~NeL~~~GY~SIG~~~~TqpV~~Ge~ERaGRW~~~--~~tECGlH 246 (261)
T KOG0189|consen 177 F--------ELLKINPLANWEFNDVWNYIRTNNVPYNELLAAGYRSIGDEHSTQPVLEGEDERAGRWWGE--KKTECGLH 246 (261)
T ss_pred c--------ceeeecccccccHHHHHHHHHhcCCcHHHHHhcCCeeccCccccCcCCCCcccccccccch--hchhcccc
Confidence 6 4899999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred CCCcccc
Q 042284 282 NGNIKQE 288 (430)
Q Consensus 282 ~~~i~~~ 288 (430)
..|++..
T Consensus 247 kg~~s~~ 253 (261)
T KOG0189|consen 247 KGNQSKF 253 (261)
T ss_pred Ccchhhh
Confidence 9988654
No 5
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=100.00 E-value=2.4e-58 Score=432.00 Aligned_cols=231 Identities=42% Similarity=0.746 Sum_probs=205.0
Q ss_pred cCCCChhhHHHHHHhccCCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHH
Q 042284 41 ESTNDHEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDT 119 (430)
Q Consensus 41 ~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~ 119 (430)
+......++.++|++++.++|+++|++++++|+++++|+|||||||+|| ||+.+.+++++++|+|||++||||++|+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~ 87 (241)
T PRK02090 8 PKADLALDLAELNAELEGASAQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDE 87 (241)
T ss_pred cccchHHHHHHHHHHhccCCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHH
Confidence 4445678899999999999999999999999998899999999999776 999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEccCchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeec
Q 042284 120 VEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQID 199 (430)
Q Consensus 120 ~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d 199 (430)
+.++||+++++++|............+.+.......++||.++|+.||+++++++++|++|+|++||. .|+.++.++.+
T Consensus 88 ~~~~~gl~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~itG~R~~es~-~R~~~~~~~~~ 166 (241)
T PRK02090 88 LTERLLLNLKVYRPDASAAEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDAWITGLRREQSG-TRANLPVLEID 166 (241)
T ss_pred HHHHhCCCEEEECCCccHHHHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCCeEEEechhhCc-hhccCceeeec
Confidence 99999999999999865444433333433222256789999999999999999888899999999997 99988877654
Q ss_pred CCCCcccCCCCCeEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCCCCCCccccCCCcCCCCCccccc
Q 042284 200 TSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECG 279 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~grw~~~~~~~~e~g 279 (430)
. +.++++||++|++.|||.|++.+||||||||++||+|+||++||.|+.+|+++|+|||| +..|+|||
T Consensus 167 ~----------~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~gr~~--~~~~~ecg 234 (241)
T PRK02090 167 G----------GRFKINPLADWTNEDVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGRWW--GGLKKECG 234 (241)
T ss_pred C----------CeEEEeehhhCCHHHHHHHHHHcCCCCChHHHcCCCCcCCCCCCCCCCCCCCccccCCC--CCCCccCC
Confidence 2 57999999999999999999999999999999999999999999999999999999997 56689999
Q ss_pred CCCCC
Q 042284 280 LHNGN 284 (430)
Q Consensus 280 ~~~~~ 284 (430)
||..+
T Consensus 235 ~~~~~ 239 (241)
T PRK02090 235 LHEGN 239 (241)
T ss_pred CCCCC
Confidence 99754
No 6
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=100.00 E-value=8.3e-57 Score=414.83 Aligned_cols=209 Identities=34% Similarity=0.573 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHH
Q 042284 61 PLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQ 139 (430)
Q Consensus 61 ~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~ 139 (430)
++++|+|++++|+.+++|+|||||||+|| ||+.++.++++|+|+|||.+||||++|++++.++||++++++.|... ..
T Consensus 1 ~~~~l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~~~~-~~ 79 (212)
T TIGR00434 1 AQEIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPDLS-LA 79 (212)
T ss_pred CHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCchh-HH
Confidence 46899999999997799999999999776 99999999999999999999999999999999999999999998754 34
Q ss_pred HHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcCc--eEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEec
Q 042284 140 ALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGLR--AWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNP 217 (430)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~P 217 (430)
.+....|... +..+.++||.++|+.|+.+++++.. +|++|+|++||+ .|+.+..++.+.. ++.++++|
T Consensus 80 ~~~~~~g~~~-~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~-~R~~~~~~~~~~~--------~~~~~v~P 149 (212)
T TIGR00434 80 EQAAKYGDKL-WEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGP-SRANLSILNIDEK--------FGILKVLP 149 (212)
T ss_pred HHHHhcCCCc-cccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCc-cccCCceeeecCC--------CCcEEEee
Confidence 4455666433 4457889999999999999999776 999999999997 9999888765542 36899999
Q ss_pred ccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCCCCCCccccCCCcCCCCCcccccCCC
Q 042284 218 LANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHN 282 (430)
Q Consensus 218 i~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~grw~~~~~~~~e~g~~~ 282 (430)
|+||++.|||+||+++||||||||++||+||||++||.|+.+|+++|+||| .|..|+|||||.
T Consensus 150 I~dWt~~dVw~Yi~~~~lp~npLY~~Gy~siGc~~ct~~~~~~~~~r~gr~--~~~~~~ecg~~~ 212 (212)
T TIGR00434 150 LIDWTWKDVYQYIDAHNLPYNPLHDQGYPSIGDYHSTRPVKEGEDERAGRW--KGKAKTECGLHE 212 (212)
T ss_pred hhhCCHHHHHHHHHHcCCCCCchhhcCCCCcCCCCCCCCCCCCCCccCccC--CCCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999998 466799999994
No 7
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.9e-54 Score=407.22 Aligned_cols=235 Identities=41% Similarity=0.706 Sum_probs=206.9
Q ss_pred hhhHHHHHHhccCCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHh
Q 042284 46 HEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHY 124 (430)
Q Consensus 46 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~ 124 (430)
...+..+++.++..+++++++|+++.+++.++++|||||||+|+ ||+.++..+++|||+|||++||||++|++++.++|
T Consensus 12 ~~~~~~~~~~le~~~~~~i~~~~~~~~~~~~~~~~S~Gkds~V~l~L~~k~~~~~~vif~DTg~~f~Et~~~~d~~~~~~ 91 (261)
T COG0175 12 SENLASLLDKLEAESPIEILRWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYHFPETYEFRDRLAEEY 91 (261)
T ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHcCCCeEEEecCchhHHHHHHHHHHhcCCCcEEEEeCCCcCHHHHHHHHHHHHHc
Confidence 44466788899988889999999999998789999999999776 99999999999999999999999999999999999
Q ss_pred CCcEEEEccCchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcC--ceEEEeeeccCCcccccCCCeeeecCCC
Q 042284 125 GIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGL--RAWITGQRKDQSPGTRAEIPVVQIDTSF 202 (430)
Q Consensus 125 gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~d~~~ 202 (430)
|++++++.|+....+. ..++...+.....+|||.++|++||+++++++ ++||+|+||+||. .|+++++++.+..+
T Consensus 92 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~-~Rak~~~~~~~~~~ 168 (261)
T COG0175 92 GLDLKVYRPDDEVAEG--EKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESP-TRAKLPVVSFDSEF 168 (261)
T ss_pred CCeEEEecCccchhhh--hhcccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEeccccccc-ccccCceeccccCc
Confidence 9999999888764444 33343333333456899999999999999988 7999999999997 99999999887643
Q ss_pred CcccCCCCCeEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCCCC-CCccccCCCcCCCCCcccccCC
Q 042284 203 EGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLP-GQHEREGRWWWEDAKAKECGLH 281 (430)
Q Consensus 203 ~~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~-~~~~r~grw~~~~~~~~e~g~~ 281 (430)
++.++++||+|||..|||.||..++|||||||++||+||||++||.++.+ ++++|+||||+....++|||+|
T Consensus 169 -------~~~~rv~Pl~~Wt~~dVw~Yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~~~~~~r~~rw~~~~~~~~E~g~~ 241 (261)
T COG0175 169 -------GESIRVNPLADWTELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKTECGLH 241 (261)
T ss_pred -------CCeEEEcchhcCCHHHHHHHHHHhCCCCCcHHhccCCccCcccCCCcCccccccHHHHhhccccchhhhhccc
Confidence 36899999999999999999999999999999999999999999999998 9999999999887789999999
Q ss_pred CCCcccccc
Q 042284 282 NGNIKQEEL 290 (430)
Q Consensus 282 ~~~i~~~~~ 290 (430)
..+......
T Consensus 242 ~~~~~~~~~ 250 (261)
T COG0175 242 RADDPDSAL 250 (261)
T ss_pred ccccccccc
Confidence 776554443
No 8
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=100.00 E-value=1.8e-53 Score=384.60 Aligned_cols=189 Identities=51% Similarity=0.952 Sum_probs=173.5
Q ss_pred hHHH-HHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCCCccchhhhhhh
Q 042284 83 AEDV-VLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRI 161 (430)
Q Consensus 83 GKDS-~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~cc~~ 161 (430)
|.|| |+|||+.++.++++|+|+|||++||||++|++++.++||++++++.|.....++...+.|.+.++...+++||..
T Consensus 2 ~~~s~Vll~L~~~~~~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~cc~~ 81 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPHECCGI 81 (191)
T ss_pred ChHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchHHHHHH
Confidence 4455 556999999999999999999999999999999999999999999887666677777889887766558999999
Q ss_pred hchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccccchHHHHHHHHHcCCCCcccc
Q 042284 162 RKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLH 241 (430)
Q Consensus 162 ~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY 241 (430)
+|++||.++++++++||+|+|++||. .|+.++.++.+..+ +.++++||++|+..|||+||+++||||||||
T Consensus 82 ~K~~Pl~~~l~~~~~~i~G~Rr~Es~-~R~~~~~~~~~~~~--------~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~npLY 152 (191)
T TIGR02055 82 RKVEPLKRALAGVSAWITGLRRDQSP-TRAQAPFLEIDEAF--------GLVKINPLADWTSEDVWEYIADNELPYNPLH 152 (191)
T ss_pred HhHHHHHHHHhcCCEEEEEeccccCc-hhcCCceeeecCCC--------CeEEEEecccCCHHHHHHHHHHcCCCCChHH
Confidence 99999999999999999999999997 99999988877532 4889999999999999999999999999999
Q ss_pred ccCCcccCCcCCCCCCCCCCccccCCCcCCCCCcccccC
Q 042284 242 SQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGL 280 (430)
Q Consensus 242 ~~Gy~siGC~~Ct~~~~~~~~~r~grw~~~~~~~~e~g~ 280 (430)
++||+||||++||.|+.+|+++|+|||||.+..|+||||
T Consensus 153 ~~Gy~siGC~~Ct~~~~~~~~~r~gRw~~~~~~~~ecg~ 191 (191)
T TIGR02055 153 DRGYPSIGCEPCTRPVAPGEDPRAGRWWWEEAAKKECGL 191 (191)
T ss_pred HcCCCCCCCcCCCCCCCCCCCccCcCcCCCCCCCCCCCC
Confidence 999999999999999999999999999999888999997
No 9
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=1.4e-43 Score=336.15 Aligned_cols=192 Identities=24% Similarity=0.399 Sum_probs=160.2
Q ss_pred CCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhc----CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 59 ASPLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLT----GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 59 ~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~----~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
++|+++|+++++++++ ++++|||||||+|| ||+.++ .++++++|+|||++||||++|+++++++||++++++.|
T Consensus 24 ~esi~ilrea~~~f~~-~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~ 102 (312)
T PRK12563 24 AESIHILREVVAECSK-PVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHN 102 (312)
T ss_pred HHHHHHHHHHHHhcCC-cEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecC
Confidence 5679999999999876 78999999999776 899887 67899999999999999999999999999999998877
Q ss_pred CchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeee-------ecCCCCc
Q 042284 134 NAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQ-------IDTSFEG 204 (430)
Q Consensus 134 ~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~d~~~~~ 204 (430)
... + ..|...+ ..+..+||.++|+.||++++. ++++||+|+|+||+. .|++.++++ +|++.+.
T Consensus 103 ~~~-~-----~~G~~~~-~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~-sRak~~ifs~r~~~~~wD~~~qr 174 (312)
T PRK12563 103 PDG-I-----ARGIVPF-RHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEK-SRAKERIFSFRSAFHRWDPKAQR 174 (312)
T ss_pred hHH-H-----HhCCCcc-cCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhh-hhccCceecccccccccCccccC
Confidence 432 2 2354433 456889999999999999997 668999999999996 999998886 4443210
Q ss_pred --------ccCCCCCeEEEecccccchHHHHHHHHHcCCCCccccccC--------------------------------
Q 042284 205 --------IDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQG-------------------------------- 244 (430)
Q Consensus 205 --------~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~G-------------------------------- 244 (430)
.....+..+|++||++||+.|||.||+.++|||||||..+
T Consensus 175 Pelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 254 (312)
T PRK12563 175 PELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLVPLYFAKRRPVVERDGLLIMVDDERTPLRPGETPQQRKV 254 (312)
T ss_pred hhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCCcchhcCCCceEEECCeEEeccccccCCCCCCcccccee
Confidence 0001135899999999999999999999999999999864
Q ss_pred -CcccCCcCCCCCCCC
Q 042284 245 -YISIGCEPCTRPVLP 259 (430)
Q Consensus 245 -y~siGC~~Ct~~~~~ 259 (430)
|+++||++||.++..
T Consensus 255 r~Rtlg~~~~t~~v~s 270 (312)
T PRK12563 255 RFRTLGCYPLTGAVES 270 (312)
T ss_pred EeeccCCccccCccCC
Confidence 888888888887754
No 10
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=100.00 E-value=5.8e-42 Score=324.47 Aligned_cols=192 Identities=27% Similarity=0.422 Sum_probs=161.0
Q ss_pred CCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhc----CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 59 ASPLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLT----GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 59 ~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~----~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
++++++|++++++|++ ++++|||||||+|| ||+.++ .++++++|+|||++||||++|+++++++||++++++.+
T Consensus 6 ~esi~ilRe~~~~f~~-~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~v~~~ 84 (294)
T TIGR02039 6 SEAIHIIREVAAEFER-PVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLIVHSN 84 (294)
T ss_pred HHHHHHHHHHHHhcCC-cEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 5689999999999986 67899999999776 898887 46799999999999999999999999999999999887
Q ss_pred CchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeee-------ecCCCC-
Q 042284 134 NAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQ-------IDTSFE- 203 (430)
Q Consensus 134 ~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~d~~~~- 203 (430)
... ...|...+ ..+..+||.++|+.||++++. ++++|++|+|+||+. .|++..+++ +|++..
T Consensus 85 ~~~------~~~g~~~~-~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~-sRake~i~s~r~~~~~wD~~~q~ 156 (294)
T TIGR02039 85 EEG------IADGINPF-TEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEK-SRAKERIFSFRNAFHQWDPKKQR 156 (294)
T ss_pred hhh------hhcCcccc-ccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhh-HhhcCceeeccccccccCccccC
Confidence 632 24566544 345678999999999999997 678999999999996 999877764 343211
Q ss_pred --------cccCCCCCeEEEecccccchHHHHHHHHHcCCCCcccccc--------------------------------
Q 042284 204 --------GIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQ-------------------------------- 243 (430)
Q Consensus 204 --------~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~-------------------------------- 243 (430)
+.. ..+..++++||++|++.|||.||..++|||||||..
T Consensus 157 Pelw~~~~~~~-~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~r~g~~~~~~~~~~~~~~~~~~~~~~ 235 (294)
T TIGR02039 157 PELWNLYNGRI-SKGESVRVFPLSNWTELDIWRYIAAENIPIVPLYFAAKRPVVQRDGMLIMVDDVRMPLAPGEVVKERM 235 (294)
T ss_pred chhhhcccccc-ccCCcEEEechhhCCHHHHHHHHHHcCCCCCcCeecCccceeeccCeEEecCccccCCCCCCcccccc
Confidence 110 123579999999999999999999999999999953
Q ss_pred -CCcccCCcCCCCCCCCC
Q 042284 244 -GYISIGCEPCTRPVLPG 260 (430)
Q Consensus 244 -Gy~siGC~~Ct~~~~~~ 260 (430)
+|+++||++||.++...
T Consensus 236 ~r~rt~g~~~~t~~~~s~ 253 (294)
T TIGR02039 236 VRFRTLGCYPLTGAIESD 253 (294)
T ss_pred eeecccCcccCCCcccCC
Confidence 89999999999998764
No 11
>PRK08557 hypothetical protein; Provisional
Probab=100.00 E-value=7.4e-42 Score=339.43 Aligned_cols=188 Identities=26% Similarity=0.362 Sum_probs=163.2
Q ss_pred CCCHHHHHHHHHHHcCC---cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 58 SASPLEIMDKAFQKFGN---DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 58 ~~~~~~~i~~~~~~~~~---~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
.++|+++|++++++|+. .+++||||||||+++ +|+.+..++++++|+|||.+||||++|+++++++||++++++.+
T Consensus 163 e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~ 242 (417)
T PRK08557 163 EENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDG 242 (417)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 46789999999999863 588999999999877 78888888899999999999999999999999999999988875
Q ss_pred CchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhc---C--ceEEEeeeccCCcccccCCCeeeecCCCCcccCC
Q 042284 134 NAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKG---L--RAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGG 208 (430)
Q Consensus 134 ~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~---~--~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~ 208 (430)
. .+++.+...|+| ..+.+|||.++|+.|+++++++ . .+|++|+|++||. .|+.++..+.++.
T Consensus 243 ~--~f~~~~~~~G~P---s~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~-~Ra~~~~~~~~~~------- 309 (417)
T PRK08557 243 D--NFWENLEKEGIP---TKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESF-TRANLDYERKSGF------- 309 (417)
T ss_pred h--HHHHHHhhccCC---cccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccch-hhccCceeccccc-------
Confidence 4 455566677764 4578999999999999999975 3 3899999999997 9999887554421
Q ss_pred CCCeEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCCC
Q 042284 209 KGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVL 258 (430)
Q Consensus 209 ~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~ 258 (430)
.++.++++||++|+..|||.||+.++|||||||++||+|+||++||.+..
T Consensus 310 ~~~~~~i~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~ 359 (417)
T PRK08557 310 IDFQTNVFPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLCPSALN 359 (417)
T ss_pred ccCceeEEecccCCHHHHHHHHHHcCCCCCchhhCCCCCCCccCCCCccH
Confidence 13567999999999999999999999999999999999999999999864
No 12
>PRK13794 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-41 Score=341.13 Aligned_cols=187 Identities=26% Similarity=0.371 Sum_probs=165.5
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhc-CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCc
Q 042284 58 SASPLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLT-GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNA 135 (430)
Q Consensus 58 ~~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~-~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~ 135 (430)
..+|+++|+++++.++.+++|||||||||+|+ +|+.++ +.++.++|+|||.+||||++|+++++++||++++++.+.
T Consensus 232 ~~~a~~~i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~- 310 (479)
T PRK13794 232 ERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE- 310 (479)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEchH-
Confidence 46789999999999988899999999999875 788777 688999999999999999999999999999999988776
Q ss_pred hHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhc----CceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCC
Q 042284 136 VEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKG----LRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGS 211 (430)
Q Consensus 136 ~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~----~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~ 211 (430)
.+++.+..+|+| ..+.+|||.++|+.|+++++++ ..++++|+|++||. .|+..+.++.++. .++
T Consensus 311 -~f~~~~~~~G~P---~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~-~Ra~~~~~~~~~~-------~~~ 378 (479)
T PRK13794 311 -EFWEKLEEYGPP---ARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESF-NRSKKPRIWRNPY-------IKK 378 (479)
T ss_pred -HHHHHHHhcCCC---CCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccH-hHhcCcccccccC-------cCC
Confidence 566666667754 4578999999999999999975 24899999999997 9999988765542 256
Q ss_pred eEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCC
Q 042284 212 LVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPV 257 (430)
Q Consensus 212 ~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~ 257 (430)
.++++||++||..|||.||..++|||||||++||.|+||++||...
T Consensus 379 ~~~~~PI~~Wt~~dVw~Yi~~~~lp~npLY~~G~~riGC~~Cp~~~ 424 (479)
T PRK13794 379 QILAAPILHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMCPAME 424 (479)
T ss_pred cEEEechHhCCHHHHHHHHHHcCCCCChHHHCCCCCCccccCcCcC
Confidence 8899999999999999999999999999999999999999999864
No 13
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=2.9e-40 Score=315.87 Aligned_cols=192 Identities=29% Similarity=0.488 Sum_probs=159.4
Q ss_pred CCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhc----CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 59 ASPLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLT----GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 59 ~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~----~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
++++++|++++++|++ ++|+|||||||+|| ||+.++ ..+++++|+|||++||||++|+++++++||++++++.+
T Consensus 14 ~esi~iLrea~~~f~~-~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~ 92 (301)
T PRK05253 14 AESIHILREVAAEFEN-PVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSN 92 (301)
T ss_pred HHHHHHHHHHHHhCCC-EEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 6679999999999975 99999999999776 888876 45799999999999999999999999999999988876
Q ss_pred CchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeee-------ecCC---
Q 042284 134 NAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQ-------IDTS--- 201 (430)
Q Consensus 134 ~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~d~~--- 201 (430)
... ...|...+ ..+.++||..+|+.||.++++ ++++|++|+|+||+. .|++..+++ +|++
T Consensus 93 ~~~------i~~g~~~~-~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~-~Ra~e~~fs~r~~~~~wd~~~q~ 164 (301)
T PRK05253 93 PEG------IARGINPF-RHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEK-SRAKERIFSFRDEFGQWDPKNQR 164 (301)
T ss_pred hHH------HhcCCCCC-CCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhh-hhccCccccccccccccCccccC
Confidence 521 23454443 345679999999999999997 567999999999996 999877664 3332
Q ss_pred ------CCcccCCCCCeEEEecccccchHHHHHHHHHcCCCCccccc---------cC----------------------
Q 042284 202 ------FEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHS---------QG---------------------- 244 (430)
Q Consensus 202 ------~~~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~---------~G---------------------- 244 (430)
|+++. ..+..++++||++|++.|||.||+.++|||||||. .|
T Consensus 165 Pelw~~~~~~~-~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (301)
T PRK05253 165 PELWNLYNGRI-NKGEHIRVFPLSNWTELDIWQYIERENIPIVPLYFAHERPVVERDGMLIMVDDRMPLRPGEVVEERMV 243 (301)
T ss_pred hhhhhhccccc-cCCCeEEEeehhhCCHHHHHHHHHHcCCCCCcccccCCCceEeECCeEEecccccCCCCCCcceeeee
Confidence 11111 12358999999999999999999999999999998 45
Q ss_pred -CcccCCcCCCCCCCCC
Q 042284 245 -YISIGCEPCTRPVLPG 260 (430)
Q Consensus 245 -y~siGC~~Ct~~~~~~ 260 (430)
|+++||++||.++...
T Consensus 244 r~r~~g~~~~t~~~~s~ 260 (301)
T PRK05253 244 RFRTLGCYPCTGAVESE 260 (301)
T ss_pred eeeccCCccCCCcccCC
Confidence 9999999999998764
No 14
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=100.00 E-value=6.9e-41 Score=299.32 Aligned_cols=170 Identities=38% Similarity=0.701 Sum_probs=127.4
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCCCcc
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYED 153 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~ 153 (430)
+++|+|||||||++| +|+.++..+++++|+|||.+||||++|++++.++||+++.++.+........ ...+.+ ..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~---~~ 76 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPPETFEQRF-ILYGWP---SK 76 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETTSHHHHHH-HHHHHS---TT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccccchhhcc-cccccc---ch
Confidence 389999999999876 8999988889999999999999999999999999999998888876543333 222211 12
Q ss_pred chh-hhhhhhchHHHHHHHhcCc--eEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccccchHHHHHHH
Q 042284 154 GHQ-ECCRIRKVRPLKRALKGLR--AWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFL 230 (430)
Q Consensus 154 ~~~-~cc~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~dVw~yi 230 (430)
..+ +||..+|+.|+++++++.. ++++|+|++||. +|+.....+.+..+ ++.++++||++|+++|||+|+
T Consensus 77 ~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~-~R~~~~~~~~~~~~-------~~~~~~~Pi~~wt~~dV~~yi 148 (174)
T PF01507_consen 77 LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESP-RRAKLPMFEFDEDN-------PKIIRVYPIADWTEEDVWDYI 148 (174)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTT-GCCGSSSEEEETTT-------TSEEEE-TTTT--HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh-hhhhchhhhccccc-------CCEEEEEehhhCCHHHHHHHH
Confidence 222 6999999999999998664 999999999997 99988887776533 458999999999999999999
Q ss_pred HHcCCCCccccccCCcccCCcCCCCC
Q 042284 231 RAMNIPINSLHSQGYISIGCEPCTRP 256 (430)
Q Consensus 231 ~~~~lp~~pLY~~Gy~siGC~~Ct~~ 256 (430)
+.+|||+||||++||.|+||++||.|
T Consensus 149 ~~~~l~~~~lY~~g~~r~GC~~C~~~ 174 (174)
T PF01507_consen 149 KANGLPYNPLYDKGYSRVGCWPCTRP 174 (174)
T ss_dssp HHHT--B-HHHHCT-SS--BTTTB--
T ss_pred HHhcCCCcHHHHCcCCCcCCccCCCC
Confidence 99999999999999999999999975
No 15
>PRK13795 hypothetical protein; Provisional
Probab=100.00 E-value=2e-38 Score=333.52 Aligned_cols=188 Identities=24% Similarity=0.398 Sum_probs=165.0
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCch
Q 042284 58 SASPLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAV 136 (430)
Q Consensus 58 ~~~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~ 136 (430)
...++++|++++++++.+++|||||||||+|| +|+.++..++.++|+|||.+||||++|+++++++||++++++.+. .
T Consensus 228 ~~~ai~~Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~-~ 306 (636)
T PRK13795 228 EKEAVNFIRGVAEKYNLPVSVSFSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAG-D 306 (636)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEccc-H
Confidence 46779999999998887799999999999776 888888888999999999999999999999999999999998876 3
Q ss_pred HHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcC----ceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCe
Q 042284 137 EVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGL----RAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSL 212 (430)
Q Consensus 137 ~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~----~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~ 212 (430)
.+++.....|. +..+.+|||..+|+.|++++++.. .++++|+|++||. .|++.+.++.++. .++.
T Consensus 307 ~f~~~~~~~g~---P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~-~R~~~~~~~~~~~-------~~~~ 375 (636)
T PRK13795 307 AFWRAVEKFGP---PARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESF-SRAKSPRVWRNPW-------VPNQ 375 (636)
T ss_pred hHHHhhhccCC---CccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchH-HHhhCcccccCCC-------CCCc
Confidence 35555555554 356789999999999999999854 3789999999997 9999887765532 2578
Q ss_pred EEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCC
Q 042284 213 VKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPV 257 (430)
Q Consensus 213 ~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~ 257 (430)
++++||++|+..|||.||..++|||||||++||+|+||++||.+.
T Consensus 376 ~~~~PI~~Wt~~dVw~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~ 420 (636)
T PRK13795 376 IGASPIQDWTALEVWLYIFWRKLPYNPLYERGFDRIGCWLCPSSS 420 (636)
T ss_pred EEEechHhCCHHHHHHHHHHhCCCCChHHHCCCCCCCccCCCCCC
Confidence 999999999999999999999999999999999999999999974
No 16
>PRK08576 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-34 Score=283.33 Aligned_cols=196 Identities=21% Similarity=0.303 Sum_probs=150.4
Q ss_pred hhHHHHHHhccCCCHHHHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHh
Q 042284 47 EDYEKLARGMESASPLEIMDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHY 124 (430)
Q Consensus 47 ~~~~~l~~~l~~~~~~~~i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~ 124 (430)
..+.++|+.+-.. -.+....++++++ .+++|+|||||||++| +++.+...++.++|+|||.+||+|+++++++++++
T Consensus 208 ~~~~e~N~~~le~-~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~~~V~aV~iDTG~e~pet~e~~~~lae~L 286 (438)
T PRK08576 208 EKLIEANREVLEA-FEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAFGDVTAVYVDTGYEMPLTDEYVEKVAEKL 286 (438)
T ss_pred HHHHHHhHHHHHH-HHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhCCCCEEEEeCCCCCChHHHHHHHHHHHHc
Confidence 3344556554111 1223344566776 3799999999999876 88888766799999999999999999999999999
Q ss_pred CCcEEEEccCchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcC--ceEEEeeeccCCcccccCCCeeeecCCC
Q 042284 125 GIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGL--RAWITGQRKDQSPGTRAEIPVVQIDTSF 202 (430)
Q Consensus 125 gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~d~~~ 202 (430)
|+++++. .. .+.......|.+. ....||..+|+.||.+++++. ++|++|+|++||. .|+..+.+..+..
T Consensus 287 GI~lii~--~v-~~~~~~~~~g~p~----~~~rcCt~lK~~pL~raake~g~~~iatG~R~dES~-~R~~~p~v~~~~~- 357 (438)
T PRK08576 287 GVDLIRA--GV-DVPMPIEKYGMPT----HSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGESA-RRRLRPPVVERKT- 357 (438)
T ss_pred CCCEEEc--cc-CHHHHhhhcCCCC----cccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHHhH-HhhcCCccccccc-
Confidence 9998762 11 1223334455332 234577789999999999854 6899999999996 7887765543321
Q ss_pred CcccCCCCCeEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCC
Q 042284 203 EGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPV 257 (430)
Q Consensus 203 ~~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~ 257 (430)
++++..+++||++|++.|||.|++.++||+||||++||+|+||++||...
T Consensus 358 -----~~~~v~rI~PL~~Wte~DV~~YI~~~gLP~npLY~~Gy~rIGC~~Cp~~~ 407 (438)
T PRK08576 358 -----NFGKILVVMPIKFWSGAMVQLYILMNGLELNPLYYKGFYRLGCYICPSLR 407 (438)
T ss_pred -----CCCCeEEEeChhhCCHHHHHHHHHHhCCCCCcHHhCCCCccCCcCCcchH
Confidence 12468999999999999999999999999999999999999999999754
No 17
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=100.00 E-value=1.4e-32 Score=244.57 Aligned_cols=167 Identities=41% Similarity=0.677 Sum_probs=137.0
Q ss_pred cEEEEechhHHHHHH-HHHHhcCC---CcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGR---PFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSF 150 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~---~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~ 150 (430)
+++|+|||||||++| +|+.+... ++.++|+|||.++|+|+++++++++.+|++++++.+................+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGFPL 80 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhhhccCC
Confidence 489999999999776 88887765 89999999999999999999999999999999887765432211111111234
Q ss_pred CccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccccchHHHHH
Q 042284 151 YEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWN 228 (430)
Q Consensus 151 ~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~dVw~ 228 (430)
+....++||..+|..|+.++++ +.+++++|+|+||+. .|..+....... ..++..+++||++|+.+|||+
T Consensus 81 ~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~-~r~~~~~~~~~~-------~~~~~~~~~Pl~~w~~~di~~ 152 (173)
T cd01713 81 PSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESA-RRALLPVVWTDD-------GKGGILKVNPLLDWTYEDVWA 152 (173)
T ss_pred ccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccch-hhhhCccccccC-------CCCCcEEEcchhcCCHHHHHH
Confidence 4567899999999999999998 567999999999996 777766541111 225688999999999999999
Q ss_pred HHHHcCCCCccccccCCcccC
Q 042284 229 FLRAMNIPINSLHSQGYISIG 249 (430)
Q Consensus 229 yi~~~~lp~~pLY~~Gy~siG 249 (430)
|++.+|||+||||+.||+|+|
T Consensus 153 ~~~~~~l~~~~ly~~g~~~~g 173 (173)
T cd01713 153 YLARHGLPYNPLYDQGYRSIG 173 (173)
T ss_pred HHHHcCCCCCHHHHcCCCCCC
Confidence 999999999999999999997
No 18
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=99.97 E-value=4.7e-31 Score=263.01 Aligned_cols=191 Identities=18% Similarity=0.264 Sum_probs=142.2
Q ss_pred HHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhc---------CCCcEEEEecCCCCCHHHHHHHHHHH-------HHhC
Q 042284 63 EIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLT---------GRPFRVFSLDTGRLNPETHQFFDTVE-------KHYG 125 (430)
Q Consensus 63 ~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~---------~~~i~vi~~DTg~~fpet~~~~~~~~-------~~~g 125 (430)
+-|+.++...+.+++|+|||||||+++ +|+.++ .+.+.|+|.|||+|||+|++|++++. +++|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~ 82 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQG 82 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 446666666566689999999999776 666553 13588999999999999999997654 5557
Q ss_pred CcE--EEEccCch-HHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcC------ceEEEeeeccCCcccccCCCe-
Q 042284 126 IRI--EYTFPNAV-EVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGL------RAWITGQRKDQSPGTRAEIPV- 195 (430)
Q Consensus 126 l~i--~~~~p~~~-~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~------~~~i~G~R~~Es~~~R~~~~~- 195 (430)
+++ +++.|... .++..+.++|.|. +....+|||..+|+.|+++++++. .++++|+|++||. +|++...
T Consensus 83 lpi~~~~v~P~~~~~Fwv~liGrG~P~-P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~-~RA~~m~k 160 (447)
T TIGR03183 83 LPIEPHRLTPEIKDTFWVNLIGKGYPA-PRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQ-ARAAVMEK 160 (447)
T ss_pred CCeEEEecCCCcchHHHHHHhcCCCCC-CCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHH-HHHhhhhh
Confidence 666 46677653 4666566667654 456789999999999999999743 5899999999997 8888521
Q ss_pred eeecC---CCCcccCCCCCeEEEecccccchHHHHHHHHHcCCCC-------cccccc------------------CCcc
Q 042284 196 VQIDT---SFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPI-------NSLHSQ------------------GYIS 247 (430)
Q Consensus 196 ~~~d~---~~~~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~-------~pLY~~------------------Gy~s 247 (430)
.+... .+ ......++.+.++||.+|+..|||.||..+++|+ ..||.. |..|
T Consensus 161 ~e~~~~r~~l-~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g~~~~~l~~lY~~a~~~~eCp~v~d~~~~sCG~sR 239 (447)
T TIGR03183 161 HESGSLRDRL-SRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWGIDNKDLFGMYQGATADGECPLVVDTSTPSCGDSR 239 (447)
T ss_pred hccccccccc-cccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhcccCCCCceeeCCCCCCCCCCC
Confidence 11100 01 1112235789999999999999999999999877 345543 7789
Q ss_pred cCCcCCCCC
Q 042284 248 IGCEPCTRP 256 (430)
Q Consensus 248 iGC~~Ct~~ 256 (430)
.|||.||.-
T Consensus 240 fGCw~Ct~v 248 (447)
T TIGR03183 240 FGCWVCTMV 248 (447)
T ss_pred CCeeeCcCc
Confidence 999999964
No 19
>PRK06850 hypothetical protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=259.81 Aligned_cols=193 Identities=21% Similarity=0.281 Sum_probs=141.9
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhc---------CCCcEEEEecCCCCCHHHHHHHHHHHH-------Hh
Q 042284 62 LEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLT---------GRPFRVFSLDTGRLNPETHQFFDTVEK-------HY 124 (430)
Q Consensus 62 ~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~---------~~~i~vi~~DTg~~fpet~~~~~~~~~-------~~ 124 (430)
++-|+..+......++|+|||||||+++ +|+.++ .+.+.|+|.|||.|+|+|++|++++.+ ++
T Consensus 23 i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~ 102 (507)
T PRK06850 23 IEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQ 102 (507)
T ss_pred HHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444344689999999999765 666543 125789999999999999999887754 56
Q ss_pred CCcE--EEEccCch-HHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcC------ceEEEeeeccCCcccccCC-C
Q 042284 125 GIRI--EYTFPNAV-EVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGL------RAWITGQRKDQSPGTRAEI-P 194 (430)
Q Consensus 125 gl~i--~~~~p~~~-~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~------~~~i~G~R~~Es~~~R~~~-~ 194 (430)
|+++ +++.|... .|+..+.++|.|. |....||||..+|+.|+++++++. .++++|+|++||. +|++. .
T Consensus 103 glpi~~~~v~P~~~~sFwv~liGrG~P~-Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~-~RA~~m~ 180 (507)
T PRK06850 103 GLPITPHKLTPKINDTFWVNLIGKGYPA-PRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA-ARAQVMA 180 (507)
T ss_pred CCceEEEeeCCCcchhHHHHHhcCCCCC-CCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH-HHHhhhh
Confidence 8877 45677653 4666666777653 566889999999999999999632 4899999999997 88875 3
Q ss_pred eeeecCCCCcccCCCCCeEEEecccccchHHHHHHHHHcCCCC-------cccccc------------------CCcccC
Q 042284 195 VVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPI-------NSLHSQ------------------GYISIG 249 (430)
Q Consensus 195 ~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~-------~pLY~~------------------Gy~siG 249 (430)
..+.+..........++.+.++||.+|+..|||.||..+++|+ ..||.. |-.|.|
T Consensus 181 ~~~~~~~rl~~~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g~~~~~L~~lY~~a~~~~eCp~v~d~~~~sCG~sRfG 260 (507)
T PRK06850 181 KHEIEGSRLSRHTTLPNAFVYTPIEDWSNDDVWKYLLQWENPWGGSNRDLFTLYRGASADGECPLVVDTSTPSCGNSRFG 260 (507)
T ss_pred hhcccCcceeeccCCCCcEEEeChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhccCCCCCCeeeCCCCCCCCCCCCC
Confidence 2232211111112236788999999999999999999998887 566754 557999
Q ss_pred CcCCCCC
Q 042284 250 CEPCTRP 256 (430)
Q Consensus 250 C~~Ct~~ 256 (430)
||.||.-
T Consensus 261 CwvCt~v 267 (507)
T PRK06850 261 CWVCTVV 267 (507)
T ss_pred ccccccc
Confidence 9999964
No 20
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=195.63 Aligned_cols=205 Identities=22% Similarity=0.280 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHh----cCC-CcEEEEecCCCCCHHHHHHHHHHHHHhCCcEE----E
Q 042284 61 PLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKL----TGR-PFRVFSLDTGRLNPETHQFFDTVEKHYGIRIE----Y 130 (430)
Q Consensus 61 ~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~----~~~-~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~----~ 130 (430)
++++|+++++.|+. |+|||||||||.|| ||+.+ .++ +|.|+|+|-...|..|.+||+++...|.-.+. +
T Consensus 16 ~~eRl~~if~~f~~-VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~TidyV~em~~~~~dv~~~~yWv 94 (407)
T COG3969 16 AIERLEWIFNTFPR-VCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTIDYVQEMRESYHDVIETFYWV 94 (407)
T ss_pred HHHHHHHHHhcCCe-EEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHHHHHHHHHhcccCccccceEE
Confidence 58899999999987 99999999999765 76654 344 69999999999999999999999998532221 1
Q ss_pred EccCch-----HHHHH--HHhcC-----CCCCCc----cchhhhhhh-hc------hHHHHHHHh---cCceEEEeeecc
Q 042284 131 TFPNAV-----EVQAL--VRTKG-----LFSFYE----DGHQECCRI-RK------VRPLKRALK---GLRAWITGQRKD 184 (430)
Q Consensus 131 ~~p~~~-----~~~~~--~~~~g-----~~~~~~----~~~~~cc~~-~K------~~pl~~~~~---~~~~~i~G~R~~ 184 (430)
--|... ..+.. .-+.| ...+|+ .++...+.. .+ +.-+.+.+. ...++++|+|+|
T Consensus 95 cLPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~~~~~ta~LvGiRad 174 (407)
T COG3969 95 CLPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQKRPATAVLVGIRAD 174 (407)
T ss_pred EeehhcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHHHhccCCceEEEEeecch
Confidence 112110 00000 00000 000010 011111111 11 112222232 225899999999
Q ss_pred CCcccccCCC----eee-ec-CCCCcccCCCCCeEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCCC
Q 042284 185 QSPGTRAEIP----VVQ-ID-TSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVL 258 (430)
Q Consensus 185 Es~~~R~~~~----~~~-~d-~~~~~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~ 258 (430)
||. +|-..- .+. .+ ..+.++....+.++.++||+||..+|||.+..+++.+||||||+.|+- |-.+--+.++
T Consensus 175 ESl-NRf~ai~~~~k~~~~~~~pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~yN~LYDlmYqA-Gvp~~~MRVc 252 (407)
T COG3969 175 ESL-NRFNAIARKEKLRFADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAYNPLYDLMYQA-GVPLRQMRVC 252 (407)
T ss_pred hhH-HHHHHHHHhhhcccCCCCCceeeecCCCceEEEEecccchHHHHHHHHHhcCCcccHHHHHHHHc-CCChhhcccc
Confidence 998 883321 111 11 113223222345899999999999999999999999999999998865 6555444444
Q ss_pred -C-CCccccCCC
Q 042284 259 -P-GQHEREGRW 268 (430)
Q Consensus 259 -~-~~~~r~grw 268 (430)
| |...|.|.|
T Consensus 253 ~Pfgd~qr~gL~ 264 (407)
T COG3969 253 EPFGDEQRKGLW 264 (407)
T ss_pred CCCChhhhcccc
Confidence 2 567788876
No 21
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.87 E-value=1.5e-21 Score=160.89 Aligned_cols=106 Identities=18% Similarity=0.348 Sum_probs=94.9
Q ss_pred CCCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCC
Q 042284 317 SQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSF 396 (430)
Q Consensus 317 ~~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~ 396 (430)
.+.|++|+++||+.++...+.++++||+||||||++|+.+.|.|+++++.+++ .+.|++|||+++ .+++.++|+|.++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~-~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWP-QGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCC-hHHHHHhcCCccc
Confidence 36899999999999865567899999999999999999999999999999987 699999999999 8888338999999
Q ss_pred CEEEEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 397 PTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 397 Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
||+++|++|+. ...|.| .++.+.|..|+
T Consensus 86 PTl~lf~~g~~-~~~y~G-~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRG-PIEYKG-PMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCcc-ceEEeC-CCCHHHHHhhC
Confidence 99999999885 677887 68999998874
No 22
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.84 E-value=3.2e-20 Score=150.59 Aligned_cols=99 Identities=23% Similarity=0.628 Sum_probs=90.3
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCE
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Pt 398 (430)
.|++|+.++|++.+. .+++++|+|||+||++|+.+.|.|+++++.+++ .+.|++|||+++ +.++ ++++|.++||
T Consensus 2 ~~~~l~~~~f~~~v~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~Pt 75 (101)
T cd03003 2 EIVTLDRGDFDAAVN---SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-RMLC-RSQGVNSYPS 75 (101)
T ss_pred CeEEcCHhhHHHHhc---CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-HHHH-HHcCCCccCE
Confidence 588999999999875 668999999999999999999999999999987 699999999999 9999 9999999999
Q ss_pred EEEEeCCCcceeecCCCCCCHHHHHHH
Q 042284 399 ILFFPKHSAKPVKYPSEKRDVDSLMAF 425 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~~~~l~~~ 425 (430)
+++|++|+. ...+.| .++.+.|.+|
T Consensus 76 ~~~~~~g~~-~~~~~G-~~~~~~l~~f 100 (101)
T cd03003 76 LYVFPSGMN-PEKYYG-DRSKESLVKF 100 (101)
T ss_pred EEEEcCCCC-cccCCC-CCCHHHHHhh
Confidence 999999875 566776 7899999887
No 23
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.83 E-value=4.3e-20 Score=150.62 Aligned_cols=102 Identities=30% Similarity=0.647 Sum_probs=91.4
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCE
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Pt 398 (430)
.|++++.++|++.+. +.+++++|+|||+||++|+.+.|.|+++++.+.+ .+.|++||++++ ++++ ++|+|.++||
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~i~~~Pt 76 (104)
T cd03004 2 SVITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKY-ESLC-QQANIRAYPT 76 (104)
T ss_pred cceEcCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCch-HHHH-HHcCCCcccE
Confidence 578899999999875 4577999999999999999999999999999977 799999999999 9999 9999999999
Q ss_pred EEEEeCCCcceeecCCCCCC-HHHHHHHH
Q 042284 399 ILFFPKHSAKPVKYPSEKRD-VDSLMAFV 426 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~-~~~l~~~i 426 (430)
+++|++|+.....+.| ..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~~G-~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNG-WHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccC-CCCCHHHHHhhC
Confidence 9999998555778887 565 99999885
No 24
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.4e-20 Score=156.83 Aligned_cols=104 Identities=19% Similarity=0.358 Sum_probs=93.4
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCE
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Pt 398 (430)
.+..++..+|++.+ .+++.||+|+|||+||+||+.+.|.+++++.+|.+ .+.|++||.|++ .+++ .+|+|..+||
T Consensus 44 ~~~~~s~~~~~~~V--i~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~-~ela-~~Y~I~avPt 118 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKV--INSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEH-PELA-EDYEISAVPT 118 (150)
T ss_pred cccccCHHHHHHHH--HccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccc-cchH-hhcceeeeeE
Confidence 45667788999965 47899999999999999999999999999999988 899999999999 9999 9999999999
Q ss_pred EEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 399 ILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+++|++|++ ...+.| ..+.+.|.++|+++
T Consensus 119 vlvfknGe~-~d~~vG-~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 119 VLVFKNGEK-VDRFVG-AVPKEQLRSLIKKF 147 (150)
T ss_pred EEEEECCEE-eeeecc-cCCHHHHHHHHHHH
Confidence 999999995 345555 68999999999986
No 25
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.83 E-value=7.6e-20 Score=150.28 Aligned_cols=102 Identities=25% Similarity=0.523 Sum_probs=91.1
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC-----CCeEEEEEEcCCCchHHHHHhCCC
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG-----MGVKVGKFRADGDHKEFAKQKLQL 393 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-----~~v~~~~Vd~~~~~~~l~~~~~~V 393 (430)
.|+++++++|++.+. .+++++|+||||||++|+.+.|.|+++++.+++ ..+.|++|||+++ ++++ ++|+|
T Consensus 2 ~v~~l~~~~f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~-~~~~v 76 (108)
T cd02996 2 EIVSLTSGNIDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIA-DRYRI 76 (108)
T ss_pred ceEEcCHhhHHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHH-HhCCC
Confidence 588999999999875 678999999999999999999999999988743 1589999999999 9999 99999
Q ss_pred CCCCEEEEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 394 VSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 394 ~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
+++||+++|++|+.....+.| .++.++|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g-~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRG-QRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCcceecCC-CCCHHHHHhhC
Confidence 999999999999854577777 79999999986
No 26
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.82 E-value=1.5e-19 Score=150.05 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=93.3
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHh--HH--HHHHHHHHHHHHH--cCCCeEEEEEEcCCCchHHHHHhC
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHF--CQ--AMEGSYIELAEQL--EGMGVKVGKFRADGDHKEFAKQKL 391 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~--C~--~~~p~~~~la~~~--~~~~v~~~~Vd~~~~~~~l~~~~~ 391 (430)
..|.+||++||++.+. +.+.++|++||++||++ |+ .+.|.+.+++.++ .+ ++.|++||++++ ++++ ++|
T Consensus 9 ~~v~~lt~~nF~~~v~--~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~-~~La-~~~ 83 (120)
T cd03065 9 DRVIDLNEKNYKQVLK--KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKD-AKVA-KKL 83 (120)
T ss_pred cceeeCChhhHHHHHH--hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCC-HHHH-HHc
Confidence 5799999999999875 56779999999999987 99 8899999999888 65 799999999999 9999 999
Q ss_pred CCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 392 QLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 392 ~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+|+++||+++|++|+ .+.+.| .++.+.|.+||+++
T Consensus 84 ~I~~iPTl~lfk~G~--~v~~~G-~~~~~~l~~~l~~~ 118 (120)
T cd03065 84 GLDEEDSIYVFKDDE--VIEYDG-EFAADTLVEFLLDL 118 (120)
T ss_pred CCccccEEEEEECCE--EEEeeC-CCCHHHHHHHHHHH
Confidence 999999999999998 456777 68999999999976
No 27
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.81 E-value=3.3e-19 Score=144.58 Aligned_cols=102 Identities=28% Similarity=0.612 Sum_probs=93.7
Q ss_pred ceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEE
Q 042284 320 LVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399 (430)
Q Consensus 320 v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl 399 (430)
|..+|+++|++.+. +.+++++|+||++||++|+.+.|.|+++++.+++ ++.|+.||++++ +.++ ++|+|.++||+
T Consensus 1 v~~lt~~~f~~~i~--~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFIN--ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELC-KKYGVKSVPTI 75 (103)
T ss_dssp SEEESTTTHHHHHT--TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHH-HHTTCSSSSEE
T ss_pred CEECCHHHHHHHHH--ccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhh-hccCCCCCCEE
Confidence 67899999999886 2489999999999999999999999999999997 799999999999 9999 99999999999
Q ss_pred EEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 400 LFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 400 ~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
++|++|+. ...+.| .++.++|.+||++
T Consensus 76 ~~~~~g~~-~~~~~g-~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 76 IFFKNGKE-VKRYNG-PRNAESLIEFIEK 102 (103)
T ss_dssp EEEETTEE-EEEEES-SSSHHHHHHHHHH
T ss_pred EEEECCcE-EEEEEC-CCCHHHHHHHHHc
Confidence 99999985 447777 6899999999986
No 28
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.81 E-value=2.7e-19 Score=147.33 Aligned_cols=108 Identities=64% Similarity=1.078 Sum_probs=94.2
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCE
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Pt 398 (430)
.|++++.++|+.++...+.+++++|.||++||++|+.+.|.|+++++.+++.++.++.||++.++..++.+.++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 58899999999998655678999999999999999999999999999998656999999999832678823599999999
Q ss_pred EEEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 399 ILFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
+++|++|......|.|..++.++|..||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999988766888988458999999885
No 29
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.81 E-value=3.3e-19 Score=144.56 Aligned_cols=100 Identities=23% Similarity=0.552 Sum_probs=89.1
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCE
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Pt 398 (430)
.|++|+.++|+++++ + .++|+|||+||++|+.+.|.|+++++.+++.++.|++||++++ +.++ ++|+|.++||
T Consensus 2 ~v~~l~~~~f~~~~~----~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~-~~~~i~~~Pt 74 (101)
T cd02994 2 NVVELTDSNWTLVLE----G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLS-GRFFVTALPT 74 (101)
T ss_pred ceEEcChhhHHHHhC----C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHH-HHcCCcccCE
Confidence 588999999999763 3 3899999999999999999999999987654699999999999 9999 9999999999
Q ss_pred EEEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 399 ILFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
+++|++|+ ...+.| .++.++|.+||++
T Consensus 75 ~~~~~~g~--~~~~~G-~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGV--FRRYQG-PRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCC--EEEecC-CCCHHHHHHHHhC
Confidence 99999987 567777 7899999999874
No 30
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.80 E-value=4.1e-19 Score=146.65 Aligned_cols=105 Identities=25% Similarity=0.403 Sum_probs=89.4
Q ss_pred eEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEE
Q 042284 321 VSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400 (430)
Q Consensus 321 ~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~ 400 (430)
..++.++|++.+...+.+++++|+||||||++|+.+.|.++++++.+++.++.|++||++++ +.++ ++++|.++||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~-~~~~V~~~Pt~~ 84 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLA-RKLGAHSVPAIV 84 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHH-HHcCCccCCEEE
Confidence 45677888875532346899999999999999999999999999999764699999999999 8999 999999999999
Q ss_pred EEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 401 FFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 401 ~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+|++|+ ...+..|..+.+.|.+||+++
T Consensus 85 i~~~g~--~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 85 GIINGQ--VTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEECCE--EEEEecCCCCHHHHHHHHhcC
Confidence 999887 444433478999999999875
No 31
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.9e-19 Score=164.26 Aligned_cols=107 Identities=21% Similarity=0.420 Sum_probs=98.4
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCC
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~P 397 (430)
..|+++|+.||+..+......+||||+||||||++|+.+.|.+++++..|++ ++.+++||||++ +.++ .+|+|+++|
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~-p~vA-aqfgiqsIP 99 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAE-PMVA-AQFGVQSIP 99 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcc-hhHH-HHhCcCcCC
Confidence 4599999999999988777788999999999999999999999999999999 899999999999 9999 999999999
Q ss_pred EEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 398 TILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 398 tl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
|+++|++|+. +-.+.| ....+.|.+||+++
T Consensus 100 tV~af~dGqp-VdgF~G-~qPesqlr~~ld~~ 129 (304)
T COG3118 100 TVYAFKDGQP-VDGFQG-AQPESQLRQFLDKV 129 (304)
T ss_pred eEEEeeCCcC-ccccCC-CCcHHHHHHHHHHh
Confidence 9999999994 455666 68888999999875
No 32
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=1.5e-18 Score=142.66 Aligned_cols=103 Identities=24% Similarity=0.517 Sum_probs=91.8
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCC--CchHHHHHhCCCCCC
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADG--DHKEFAKQKLQLVSF 396 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~--~~~~l~~~~~~V~~~ 396 (430)
.|+++++++|++.+. +.+++++|+|||+||++|+.+.|.|+++++.+.+ .+.|+.||++. + ++++ ++|+|.++
T Consensus 1 ~v~~l~~~~~~~~i~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~-~~~~-~~~~i~~~ 75 (109)
T cd03002 1 PVYELTPKNFDKVVH--NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKN-KPLC-GKYGVQGF 75 (109)
T ss_pred CeEEcchhhHHHHHh--cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcccc-HHHH-HHcCCCcC
Confidence 378899999999875 4678899999999999999999999999999987 78999999998 6 8999 99999999
Q ss_pred CEEEEEeCCC----cceeecCCCCCCHHHHHHHHH
Q 042284 397 PTILFFPKHS----AKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 397 Ptl~~~~~g~----~~~~~~~gg~~~~~~l~~~i~ 427 (430)
||+++|++|+ .....|.| .++.++|.+||.
T Consensus 76 Pt~~~~~~~~~~~~~~~~~~~G-~~~~~~l~~fi~ 109 (109)
T cd03002 76 PTLKVFRPPKKASKHAVEDYNG-ERSAKAIVDFVL 109 (109)
T ss_pred CEEEEEeCCCcccccccccccC-ccCHHHHHHHhC
Confidence 9999999996 23567777 799999999973
No 33
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=5.4e-18 Score=137.69 Aligned_cols=101 Identities=30% Similarity=0.608 Sum_probs=91.5
Q ss_pred ceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEE
Q 042284 320 LVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399 (430)
Q Consensus 320 v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl 399 (430)
|.++++++|++.+. +.+++++|+||++||++|+.+.|.|.++++.+++ .+.|+.+|++++ ++++ ++|+|+++|++
T Consensus 2 v~~l~~~~~~~~i~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~-~~~~-~~~~i~~~P~~ 76 (103)
T cd03001 2 VVELTDSNFDKKVL--NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH-QSLA-QQYGVRGFPTI 76 (103)
T ss_pred eEEcCHHhHHHHHh--cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch-HHHH-HHCCCCccCEE
Confidence 67899999999875 3566799999999999999999999999999987 799999999999 9999 99999999999
Q ss_pred EEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 400 LFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 400 ~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
++|++|+.....|.| .++.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g-~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQG-GRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCC-CCCHHHHHHHh
Confidence 999999655788888 69999999986
No 34
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.77 E-value=4.6e-18 Score=156.27 Aligned_cols=106 Identities=29% Similarity=0.638 Sum_probs=94.8
Q ss_pred CCceEcccchHHHHHHhc--CCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCC
Q 042284 318 QKLVSFRRTGIENLARLQ--NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~--~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~ 395 (430)
+.|++++++||++++... ..+++++|+||||||++|+.+.|.|+++++.+++ .+.|+.||++++ ++++ ++|+|.+
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~-~~l~-~~~~I~~ 106 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA-LNLA-KRFAIKG 106 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc-HHHH-HHcCCCc
Confidence 579999999999987532 1368999999999999999999999999999987 799999999999 9999 9999999
Q ss_pred CCEEEEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 396 ~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
+||+++|++|+ ...+.+|.++.++|.+|+.+
T Consensus 107 ~PTl~~f~~G~--~v~~~~G~~s~e~L~~fi~~ 137 (224)
T PTZ00443 107 YPTLLLFDKGK--MYQYEGGDRSTEKLAAFALG 137 (224)
T ss_pred CCEEEEEECCE--EEEeeCCCCCHHHHHHHHHH
Confidence 99999999987 66666667999999999875
No 35
>PHA02278 thioredoxin-like protein
Probab=99.77 E-value=4.1e-18 Score=138.07 Aligned_cols=94 Identities=11% Similarity=0.197 Sum_probs=78.3
Q ss_pred cchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc---hHHHHHhCCCCCCCEEEE
Q 042284 325 RTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH---KEFAKQKLQLVSFPTILF 401 (430)
Q Consensus 325 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~---~~l~~~~~~V~~~Ptl~~ 401 (430)
.++|++.+. .+++++|+|||+||++|+.+.|.++++++.+.. .+.|++||++.++ ++++ ++|+|.++||+++
T Consensus 4 ~~~~~~~i~---~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~-~~~~I~~iPT~i~ 78 (103)
T PHA02278 4 LVDLNTAIR---QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAV-KLFDIMSTPVLIG 78 (103)
T ss_pred HHHHHHHHh---CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHH-HHCCCccccEEEE
Confidence 366777764 889999999999999999999999999988655 5789999999762 5899 9999999999999
Q ss_pred EeCCCcceeecCCCCCCHHHHHHH
Q 042284 402 FPKHSAKPVKYPSEKRDVDSLMAF 425 (430)
Q Consensus 402 ~~~g~~~~~~~~gg~~~~~~l~~~ 425 (430)
|++|+. .....| ..+.++|.++
T Consensus 79 fk~G~~-v~~~~G-~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQL-VKKYED-QVTPMQLQEL 100 (103)
T ss_pred EECCEE-EEEEeC-CCCHHHHHhh
Confidence 999984 334445 6788887765
No 36
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.76 E-value=5.1e-18 Score=137.59 Aligned_cols=99 Identities=25% Similarity=0.589 Sum_probs=87.9
Q ss_pred ceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC--CCeEEEEEEcCCCchHHHHHhCCCCCCC
Q 042284 320 LVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG--MGVKVGKFRADGDHKEFAKQKLQLVSFP 397 (430)
Q Consensus 320 v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Vd~~~~~~~l~~~~~~V~~~P 397 (430)
++++++++|+..+. . ++++|+|||+||++|+.+.|.|+++++.+++ ..+.|+.||++++ ..++ ++|+|.++|
T Consensus 2 ~~~l~~~~f~~~~~---~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~v~~~P 75 (102)
T cd03005 2 VLELTEDNFDHHIA---E-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELC-SEFQVRGYP 75 (102)
T ss_pred eeECCHHHHHHHhh---c-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhH-hhcCCCcCC
Confidence 67899999999885 3 3599999999999999999999999999975 3699999999999 8999 999999999
Q ss_pred EEEEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 398 TILFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 398 tl~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
|+++|++|+. ...+.| .++.++|.+||
T Consensus 76 t~~~~~~g~~-~~~~~G-~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEK-VDKYKG-TRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCCe-eeEeeC-CCCHHHHHhhC
Confidence 9999999874 566777 68999998885
No 37
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.76 E-value=2.4e-18 Score=140.60 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=71.4
Q ss_pred cchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeC
Q 042284 325 RTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPK 404 (430)
Q Consensus 325 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~ 404 (430)
.++|++.+. .+.+++++|+|||+||++|+.|.|.++++++++++ .+.|++||++++ ++++ ++|+|.++||+++|++
T Consensus 2 ~~~~~~~i~-~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~-~~la-~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 2 GWAVDQAIL-SEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEV-PDFN-KMYELYDPPTVMFFFR 77 (114)
T ss_pred HHHHHHHHh-ccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCC-HHHH-HHcCCCCCCEEEEEEC
Confidence 356777764 33578999999999999999999999999999987 689999999999 9999 9999999999999999
Q ss_pred CCc
Q 042284 405 HSA 407 (430)
Q Consensus 405 g~~ 407 (430)
|+.
T Consensus 78 G~~ 80 (114)
T cd02954 78 NKH 80 (114)
T ss_pred CEE
Confidence 985
No 38
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.76 E-value=4.5e-18 Score=137.60 Aligned_cols=92 Identities=28% Similarity=0.495 Sum_probs=80.8
Q ss_pred hHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcC-CCchHHHHHhCCCCCCCEEEEEeCC
Q 042284 327 GIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRAD-GDHKEFAKQKLQLVSFPTILFFPKH 405 (430)
Q Consensus 327 ~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~-~~~~~l~~~~~~V~~~Ptl~~~~~g 405 (430)
++.+++. ..++++++|+|||+||++|+.+.|.|+++++.+++ +.+++||.+ ++ ++++ ++|+|.++||+++|++|
T Consensus 8 ~~~~~~~-~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~-~~l~-~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 8 IALDLMA-FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIK-PSLL-SRYGVVGFPTILLFNST 82 (100)
T ss_pred HHHHHHH-hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCC-HHHH-HhcCCeecCEEEEEcCC
Confidence 4455544 35789999999999999999999999999999975 889999998 67 8999 99999999999999998
Q ss_pred CcceeecCCCCCCHHHHHHHH
Q 042284 406 SAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 406 ~~~~~~~~gg~~~~~~l~~~i 426 (430)
. ...+.| .++.++|.+||
T Consensus 83 ~--~~~~~G-~~~~~~l~~f~ 100 (100)
T cd02999 83 P--RVRYNG-TRTLDSLAAFY 100 (100)
T ss_pred c--eeEecC-CCCHHHHHhhC
Confidence 3 778888 69999999985
No 39
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.76 E-value=8.5e-18 Score=136.64 Aligned_cols=98 Identities=16% Similarity=0.261 Sum_probs=84.1
Q ss_pred cccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEE
Q 042284 323 FRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402 (430)
Q Consensus 323 lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~ 402 (430)
-+.++|++++. .+++++|+|||+||++|+.+.|.++++++.+++..+.|+.+|++ + ++++ ++|+|+++||+++|
T Consensus 5 ~~~~~~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~~~-~~~~v~~~Pt~~~~ 78 (102)
T cd02948 5 NNQEEWEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-IDTL-KRYRGKCEPTFLFY 78 (102)
T ss_pred cCHHHHHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HHHH-HHcCCCcCcEEEEE
Confidence 46688888775 78999999999999999999999999999998645889999999 6 7899 99999999999999
Q ss_pred eCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 403 PKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 403 ~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
++|+. .....| .+.+.|.++|+++
T Consensus 79 ~~g~~-~~~~~G--~~~~~~~~~i~~~ 102 (102)
T cd02948 79 KNGEL-VAVIRG--ANAPLLNKTITEL 102 (102)
T ss_pred ECCEE-EEEEec--CChHHHHHHHhhC
Confidence 99883 333434 5889999999874
No 40
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.76 E-value=9.6e-18 Score=134.59 Aligned_cols=96 Identities=16% Similarity=0.322 Sum_probs=83.2
Q ss_pred chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCC
Q 042284 326 TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKH 405 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g 405 (430)
++|++.+. .+.+++++|+|||+||++|+.+.|.++++++.+++ .+.+++||++.+ +.++ ++|+|.++||+++|++|
T Consensus 1 ~~f~~~i~-~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-~~l~-~~~~i~~~Pt~~~~~~g 76 (96)
T cd02956 1 QNFQQVLQ-ESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQ-PQIA-QQFGVQALPTVYLFAAG 76 (96)
T ss_pred CChHHHHH-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCC-HHHH-HHcCCCCCCEEEEEeCC
Confidence 36777664 23478999999999999999999999999999987 699999999999 9999 99999999999999988
Q ss_pred CcceeecCCCCCCHHHHHHHHH
Q 042284 406 SAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 406 ~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
+. ...+.| ..+.++|.+||+
T Consensus 77 ~~-~~~~~g-~~~~~~l~~~l~ 96 (96)
T cd02956 77 QP-VDGFQG-AQPEEQLRQMLD 96 (96)
T ss_pred EE-eeeecC-CCCHHHHHHHhC
Confidence 73 345666 688999999874
No 41
>PRK09381 trxA thioredoxin; Provisional
Probab=99.75 E-value=2.3e-17 Score=135.71 Aligned_cols=106 Identities=21% Similarity=0.395 Sum_probs=92.8
Q ss_pred CCCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCC
Q 042284 317 SQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSF 396 (430)
Q Consensus 317 ~~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~ 396 (430)
+..|+++++++|++.+. +.+++++|+||++||++|+.+.|.|+++++.+.+ ++.|+.||++.+ +.++ ++|+|.++
T Consensus 2 ~~~v~~~~~~~~~~~v~--~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~ 76 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-PGTA-PKYGIRGI 76 (109)
T ss_pred CCcceeeChhhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC-hhHH-HhCCCCcC
Confidence 35789999999998653 4688999999999999999999999999999987 799999999999 8999 99999999
Q ss_pred CEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 397 PTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 397 Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
||+++|++|+. ...+.| ..+.++|.++|++.
T Consensus 77 Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~i~~~ 107 (109)
T PRK09381 77 PTLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN 107 (109)
T ss_pred CEEEEEeCCeE-EEEecC-CCCHHHHHHHHHHh
Confidence 99999998873 334555 68899999999864
No 42
>PRK10996 thioredoxin 2; Provisional
Probab=99.75 E-value=2.3e-17 Score=141.75 Aligned_cols=103 Identities=18% Similarity=0.436 Sum_probs=92.4
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCE
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Pt 398 (430)
.+++++.++|+++++ .+++++|+||++||++|+.+.|.|+++++++.+ ++.|++||++++ ++++ ++|+|.++||
T Consensus 36 ~~i~~~~~~~~~~i~---~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~-~~l~-~~~~V~~~Pt 109 (139)
T PRK10996 36 EVINATGETLDKLLQ---DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAE-RELS-ARFRIRSIPT 109 (139)
T ss_pred CCEEcCHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCC-HHHH-HhcCCCccCE
Confidence 577789999999875 789999999999999999999999999999887 799999999999 9999 9999999999
Q ss_pred EEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 399 ILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+++|++|+. ...+.| ..+.+.|.+||+++
T Consensus 110 lii~~~G~~-v~~~~G-~~~~e~l~~~l~~~ 138 (139)
T PRK10996 110 IMIFKNGQV-VDMLNG-AVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEECCEE-EEEEcC-CCCHHHHHHHHHHh
Confidence 999998874 444555 68999999999876
No 43
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.74 E-value=2e-17 Score=134.43 Aligned_cols=102 Identities=31% Similarity=0.687 Sum_probs=89.4
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC-CCeEEEEEEcCCCchHHHHHhCCCCCCC
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG-MGVKVGKFRADGDHKEFAKQKLQLVSFP 397 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Vd~~~~~~~l~~~~~~V~~~P 397 (430)
+|.+|+.++|++.+. +.+++++|+||++||++|+.+.|.|+++++.+++ .++.|+++|++++ +++ ..+++.++|
T Consensus 1 ~v~~l~~~~f~~~i~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~-~~~~~~~~P 75 (104)
T cd02995 1 PVKVVVGKNFDEVVL--DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVP-SEFVVDGFP 75 (104)
T ss_pred CeEEEchhhhHHHHh--CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhh-hhccCCCCC
Confidence 478999999999875 3568999999999999999999999999999976 4699999999987 577 789999999
Q ss_pred EEEEEeCCC-cceeecCCCCCCHHHHHHHH
Q 042284 398 TILFFPKHS-AKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 398 tl~~~~~g~-~~~~~~~gg~~~~~~l~~~i 426 (430)
|+++|++|+ .....+.| ..+.++|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g-~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEG-DRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccC-CcCHHHHHhhC
Confidence 999999887 33667877 69999999986
No 44
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.74 E-value=2.5e-17 Score=134.13 Aligned_cols=98 Identities=10% Similarity=0.131 Sum_probs=81.8
Q ss_pred ccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc--hHHHHHhCCCCCCCEEEE
Q 042284 324 RRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH--KEFAKQKLQLVSFPTILF 401 (430)
Q Consensus 324 t~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~--~~l~~~~~~V~~~Ptl~~ 401 (430)
+.++|++.+. ...++++||+|||+||++|+.+.|.++++++.++ ++.|++||++++. .+++ ++|+|.++||+++
T Consensus 2 ~~~~~~~~i~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~-~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALK-KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELC-RREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHH-HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHH-HHcCCCcCCEEEE
Confidence 3578888875 2358999999999999999999999999999994 5999999999872 3789 8999999999999
Q ss_pred EeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 402 FPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 402 ~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
|++|+. ...+.| ...++|.+.+..
T Consensus 78 ~~~G~~-v~~~~G--~~~~~l~~~~~~ 101 (103)
T cd02985 78 YKDGEK-IHEEEG--IGPDELIGDVLY 101 (103)
T ss_pred EeCCeE-EEEEeC--CCHHHHHHHHHh
Confidence 999874 556666 567888877654
No 45
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.74 E-value=2.7e-17 Score=142.40 Aligned_cols=104 Identities=17% Similarity=0.394 Sum_probs=87.0
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCC--
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS-- 395 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~-- 395 (430)
..|.+++.++|++.+. .+.+++++|+|||+||++|+.+.|.|+++++++++.++.|++||++++ ++++ ++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~-~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la-~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELE-RDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVA-EKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHH-HHcCceecC
Confidence 5789999999999875 235679999999999999999999999999999754699999999999 9999 9999988
Q ss_pred ----CCEEEEEeCCCcceeecCC----------CCCCHHHHHHH
Q 042284 396 ----FPTILFFPKHSAKPVKYPS----------EKRDVDSLMAF 425 (430)
Q Consensus 396 ----~Ptl~~~~~g~~~~~~~~g----------g~~~~~~l~~~ 425 (430)
+||+++|++|+. ..++.| +..+.++++..
T Consensus 105 ~v~~~PT~ilf~~Gk~-v~r~~G~~~~~~~~~~~~~~~~~~~~~ 147 (152)
T cd02962 105 LSKQLPTIILFQGGKE-VARRPYYNDSKGRAVPFTFSKENVIRH 147 (152)
T ss_pred CcCCCCEEEEEECCEE-EEEEeccccCccccccccccHHHHHHh
Confidence 999999999985 333333 34566666654
No 46
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.9e-17 Score=134.34 Aligned_cols=86 Identities=21% Similarity=0.365 Sum_probs=77.0
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEK 416 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~ 416 (430)
.+++++|+|||+||+||+.+.|.+++++.+|++ +.|++||+|+. .+++ ++++|..+||+++|++|+. ...+.|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~-~~~~-~~~~V~~~PTf~f~k~g~~-~~~~vG-- 92 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDEL-EEVA-KEFNVKAMPTFVFYKGGEE-VDEVVG-- 92 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccC-HhHH-HhcCceEeeEEEEEECCEE-EEEEec--
Confidence 469999999999999999999999999999997 99999999996 9999 9999999999999999986 555656
Q ss_pred CCHHHHHHHHHHh
Q 042284 417 RDVDSLMAFVNAL 429 (430)
Q Consensus 417 ~~~~~l~~~i~~~ 429 (430)
.+.+++.+.|++.
T Consensus 93 a~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 93 ANKAELEKKIAKH 105 (106)
T ss_pred CCHHHHHHHHHhc
Confidence 4667888888764
No 47
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.73 E-value=3.7e-17 Score=132.89 Aligned_cols=101 Identities=20% Similarity=0.500 Sum_probs=88.9
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC-CCeEEEEEEcCC--CchHHHHHhCCCCC
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG-MGVKVGKFRADG--DHKEFAKQKLQLVS 395 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Vd~~~--~~~~l~~~~~~V~~ 395 (430)
.|+++++.+|+++++ ++++++|+||++||++|+++.|.++++++.+++ ..+.++.+|++. + +.++ ++++|++
T Consensus 1 ~~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~-~~~~i~~ 75 (104)
T cd02997 1 DVVHLTDEDFRKFLK---KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-DALK-EEYNVKG 75 (104)
T ss_pred CeEEechHhHHHHHh---hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-HHHH-HhCCCcc
Confidence 377889999999876 677999999999999999999999999999873 368999999998 7 8999 9999999
Q ss_pred CCEEEEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 396 ~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
+||+++|++|+. ...+.| ..+.++|.+||
T Consensus 76 ~Pt~~~~~~g~~-~~~~~g-~~~~~~l~~~l 104 (104)
T cd02997 76 FPTFKYFENGKF-VEKYEG-ERTAEDIIEFM 104 (104)
T ss_pred ccEEEEEeCCCe-eEEeCC-CCCHHHHHhhC
Confidence 999999999874 566766 68899998885
No 48
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-17 Score=167.24 Aligned_cols=105 Identities=22% Similarity=0.519 Sum_probs=98.3
Q ss_pred CCCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCC--CeEEEEEEcCCCchHHHHHhCCCC
Q 042284 317 SQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM--GVKVGKFRADGDHKEFAKQKLQLV 394 (430)
Q Consensus 317 ~~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~--~v~~~~Vd~~~~~~~l~~~~~~V~ 394 (430)
...|++|+.+||++.+. .+..++|.||||||+||+.+.|.+++.|..++.. .+.+++|||+++ .++| .+|+|+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~---~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~-~~y~v~ 98 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETIN---GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLA-SKYEVR 98 (493)
T ss_pred ccceEEEecccHHHHhc---cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhH-hhhcCC
Confidence 46799999999999987 8899999999999999999999999999999874 799999999999 9999 999999
Q ss_pred CCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 395 SFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 395 ~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
+|||+.+|++|.. ...|.| .++.+.|+.|+.+
T Consensus 99 gyPTlkiFrnG~~-~~~Y~G-~r~adgIv~wl~k 130 (493)
T KOG0190|consen 99 GYPTLKIFRNGRS-AQDYNG-PREADGIVKWLKK 130 (493)
T ss_pred CCCeEEEEecCCc-ceeccC-cccHHHHHHHHHh
Confidence 9999999999995 689998 6999999999975
No 49
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.73 E-value=2.6e-17 Score=135.01 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=85.3
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeC--CCCH---hHHHHHHHHHHHHHHHcCCCeEEEEEEcC-----CCchHHHH
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYA--PWCH---FCQAMEGSYIELAEQLEGMGVKVGKFRAD-----GDHKEFAK 388 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya--~wC~---~C~~~~p~~~~la~~~~~~~v~~~~Vd~~-----~~~~~l~~ 388 (430)
.+++|++.||++++. .++.+||.||| |||+ +|+.+.|.+.+.+. .+.+++|||+ ++ .+||
T Consensus 2 g~v~L~~~nF~~~v~---~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~-~~L~- 71 (116)
T cd03007 2 GCVDLDTVTFYKVIP---KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLN-MELG- 71 (116)
T ss_pred CeeECChhhHHHHHh---cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhh-HHHH-
Confidence 478999999999987 88999999999 9999 77777777665543 3899999994 45 8899
Q ss_pred HhCCCC--CCCEEEEEeCCC-cceeecCCCCCCHHHHHHHHHHh
Q 042284 389 QKLQLV--SFPTILFFPKHS-AKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 389 ~~~~V~--~~Ptl~~~~~g~-~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
++|+|+ ++||+.+|++|. ..+..|.|+.++.+.|++||++.
T Consensus 72 ~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 72 ERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999 999999999995 33678988339999999999864
No 50
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=4.5e-17 Score=132.48 Aligned_cols=102 Identities=34% Similarity=0.708 Sum_probs=90.2
Q ss_pred ceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC-CCeEEEEEEcCC-CchHHHHHhCCCCCCC
Q 042284 320 LVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG-MGVKVGKFRADG-DHKEFAKQKLQLVSFP 397 (430)
Q Consensus 320 v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Vd~~~-~~~~l~~~~~~V~~~P 397 (430)
|.++++++|++.+. +.+++++|+||++||++|+.+.|.|+++++.++. .++.++.+|++. + ++++ ++|+|.++|
T Consensus 2 ~~~l~~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~-~~~~i~~~P 77 (105)
T cd02998 2 VVELTDSNFDKVVG--DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-KDLA-KKYGVSGFP 77 (105)
T ss_pred eEEcchhcHHHHhc--CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-hhhH-HhCCCCCcC
Confidence 67889999999764 4567999999999999999999999999999973 369999999999 7 8999 999999999
Q ss_pred EEEEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 398 TILFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 398 tl~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
++++|.+|+.....+.| .++.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~g-~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEG-GRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCC-ccCHHHHHhhC
Confidence 99999988655677777 68999999885
No 51
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.72 E-value=6.2e-17 Score=130.95 Aligned_cols=100 Identities=32% Similarity=0.716 Sum_probs=90.7
Q ss_pred cccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCC-CeEEEEEEcCCCchHHHHHhCCCCCCCEEEE
Q 042284 323 FRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM-GVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401 (430)
Q Consensus 323 lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~-~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~ 401 (430)
|++++|++.+. ++++++|+||++||++|+.+.|.|+++++.+++. ++.++.+|++++ +.++ ++|+|.++|++++
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-~~~~i~~~P~~~~ 75 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-KDLA-SRFGVSGFPTIKF 75 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-HHHH-HhCCCCcCCEEEE
Confidence 56789999875 7899999999999999999999999999999764 599999999999 9999 9999999999999
Q ss_pred EeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 402 FPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 402 ~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
|++|+. ...+.| ..+.++|.+||++.
T Consensus 76 ~~~~~~-~~~~~g-~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKK-PVDYEG-GRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCc-ceeecC-CCCHHHHHHHHHhc
Confidence 999986 678887 68999999999875
No 52
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.71 E-value=5e-17 Score=131.95 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=86.3
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCC--CHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCC
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPW--CHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~w--C~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~ 395 (430)
...-.++..||++.+. .+.+++|.||++| |++|+.+.|.|++++++|++ .+.|++||++++ ++++ .+|+|++
T Consensus 10 ~~~~~~~~~~~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~-~~la-~~f~V~s 83 (111)
T cd02965 10 HGWPRVDAATLDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADE-QALA-ARFGVLR 83 (111)
T ss_pred cCCcccccccHHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCC-HHHH-HHcCCCc
Confidence 4566789999999885 8899999999997 99999999999999999987 789999999999 9999 9999999
Q ss_pred CCEEEEEeCCCcceeecCCCCCCHHHHH
Q 042284 396 FPTILFFPKHSAKPVKYPSEKRDVDSLM 423 (430)
Q Consensus 396 ~Ptl~~~~~g~~~~~~~~gg~~~~~~l~ 423 (430)
+||+++|++|+. .....| ..+.+++.
T Consensus 84 IPTli~fkdGk~-v~~~~G-~~~~~e~~ 109 (111)
T cd02965 84 TPALLFFRDGRY-VGVLAG-IRDWDEYV 109 (111)
T ss_pred CCEEEEEECCEE-EEEEeC-ccCHHHHh
Confidence 999999999983 334445 67777765
No 53
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.71 E-value=1e-16 Score=130.74 Aligned_cols=96 Identities=28% Similarity=0.627 Sum_probs=83.6
Q ss_pred chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC--CCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEe
Q 042284 326 TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG--MGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFP 403 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~ 403 (430)
++|+++. ++++++|.|||+||++|+.+.|.|+++++.+++ ..+.++.+|++.. ++++ ++|+|.++||+++|+
T Consensus 7 ~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 7 DSFKDVR----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIA-SEFGVRGYPTIKLLK 80 (104)
T ss_pred hhhhhhc----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHH-hhcCCccccEEEEEc
Confidence 6777742 577999999999999999999999999999854 2589999999998 8999 999999999999997
Q ss_pred CCCcceeecCCCCCCHHHHHHHHHHhC
Q 042284 404 KHSAKPVKYPSEKRDVDSLMAFVNALR 430 (430)
Q Consensus 404 ~g~~~~~~~~gg~~~~~~l~~~i~~~~ 430 (430)
+|. ...+.| ..+.++|.+|++++.
T Consensus 81 ~~~--~~~~~G-~~~~~~l~~~~~~~~ 104 (104)
T cd03000 81 GDL--AYNYRG-PRTKDDIVEFANRVA 104 (104)
T ss_pred CCC--ceeecC-CCCHHHHHHHHHhhC
Confidence 764 566777 689999999999863
No 54
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.70 E-value=1.5e-16 Score=131.65 Aligned_cols=102 Identities=16% Similarity=0.216 Sum_probs=85.8
Q ss_pred CCceEccc-chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCC
Q 042284 318 QKLVSFRR-TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSF 396 (430)
Q Consensus 318 ~~v~~lt~-~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~ 396 (430)
..+..+++ ++|.+.+. ++++++|+||+|||++|+.+.|.++++++++++ +.|++||++++ ++++ ++|+|.++
T Consensus 4 g~v~~i~~~~~~~~~i~---~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~~-~~l~-~~~~v~~v 76 (113)
T cd02989 4 GKYREVSDEKEFFEIVK---SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEKA-PFLV-EKLNIKVL 76 (113)
T ss_pred CCeEEeCCHHHHHHHHh---CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcccC-HHHH-HHCCCccC
Confidence 45777777 88888875 678999999999999999999999999999875 89999999999 9999 99999999
Q ss_pred CEEEEEeCCCcce-----eecCC-CCCCHHHHHHHH
Q 042284 397 PTILFFPKHSAKP-----VKYPS-EKRDVDSLMAFV 426 (430)
Q Consensus 397 Ptl~~~~~g~~~~-----~~~~g-g~~~~~~l~~~i 426 (430)
||+++|++|+... ....+ +..+.+.+..||
T Consensus 77 Pt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 77 PTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999999997421 11222 356778887776
No 55
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.70 E-value=1.9e-16 Score=134.42 Aligned_cols=101 Identities=14% Similarity=0.213 Sum_probs=83.0
Q ss_pred ccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEE-EE
Q 042284 324 RRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL-FF 402 (430)
Q Consensus 324 t~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~-~~ 402 (430)
+..+|++.+. ...+++|+|.|||+||++|+.+.|.|+++++++++ .+.|++||+|++ ++++ +.|+|++.|+++ +|
T Consensus 10 s~~e~d~~I~-~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~-~dla-~~y~I~~~~t~~~ff 85 (142)
T PLN00410 10 SGWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEV-PDFN-TMYELYDPCTVMFFF 85 (142)
T ss_pred CHHHHHHHHH-hcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCC-HHHH-HHcCccCCCcEEEEE
Confidence 3578888775 23688999999999999999999999999999987 688899999999 9999 999999776666 88
Q ss_pred eCCCcceeecCCC--------CCCHHHHHHHHHHh
Q 042284 403 PKHSAKPVKYPSE--------KRDVDSLMAFVNAL 429 (430)
Q Consensus 403 ~~g~~~~~~~~gg--------~~~~~~l~~~i~~~ 429 (430)
++|+. .+.+..| ..+.++|++.++.+
T Consensus 86 k~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 86 RNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred ECCeE-EEEEecccccccccccCCHHHHHHHHHHH
Confidence 99874 3443333 46788888887653
No 56
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.70 E-value=9.8e-17 Score=132.89 Aligned_cols=103 Identities=15% Similarity=0.225 Sum_probs=84.6
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCC
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~P 397 (430)
..|.++++++|.+.+...+.+++++|+||+|||++|+.+.|.++++++.+++ +.|++||++++ +++ ++|+|.++|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~~--~l~-~~~~i~~~P 78 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEKA--FLV-NYLDIKVLP 78 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchhh--HHH-HhcCCCcCC
Confidence 4688899999999886322358999999999999999999999999999975 89999999876 889 999999999
Q ss_pred EEEEEeCCCcceeecCC------CCCCHHHHHHHH
Q 042284 398 TILFFPKHSAKPVKYPS------EKRDVDSLMAFV 426 (430)
Q Consensus 398 tl~~~~~g~~~~~~~~g------g~~~~~~l~~~i 426 (430)
|+++|++|+.. ....| ...+.+.|.+++
T Consensus 79 t~~~f~~G~~v-~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 79 TLLVYKNGELI-DNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEEECCEEE-EEEecHHHhCCCCCCHHHHHHHh
Confidence 99999999852 23322 345666676665
No 57
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.7e-17 Score=162.07 Aligned_cols=118 Identities=28% Similarity=0.544 Sum_probs=101.6
Q ss_pred ccCCCCCCCCCCCCCCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCC-CeEEEEEEcCCC
Q 042284 304 HTNGSAPASDLFNSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM-GVKVGKFRADGD 382 (430)
Q Consensus 304 ~~~~~~~~~~~~~~~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~-~v~~~~Vd~~~~ 382 (430)
.+--+++.|+..+..+|..+..+||++++. +.+|.|||.||||||+||+++.|+|++|++.|++. ++.+++||.+.|
T Consensus 352 p~~kSqpiPe~~~~~pVkvvVgknfd~iv~--de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaN 429 (493)
T KOG0190|consen 352 PHLKSQPIPEDNDRSPVKVVVGKNFDDIVL--DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAN 429 (493)
T ss_pred cccccCCCCcccccCCeEEEeecCHHHHhh--ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccc
Confidence 344556666666667899999999999874 78999999999999999999999999999999984 899999999999
Q ss_pred chHHHHHhCCCCCCCEEEEEeCCCcc-eeecCCCCCCHHHHHHHHHH
Q 042284 383 HKEFAKQKLQLVSFPTILFFPKHSAK-PVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 383 ~~~l~~~~~~V~~~Ptl~~~~~g~~~-~~~~~gg~~~~~~l~~~i~~ 428 (430)
++. ...|.++|||++|+.|.+. ++.|.| .++.++|..||++
T Consensus 430 --d~~--~~~~~~fPTI~~~pag~k~~pv~y~g-~R~le~~~~fi~~ 471 (493)
T KOG0190|consen 430 --DVP--SLKVDGFPTILFFPAGHKSNPVIYNG-DRTLEDLKKFIKK 471 (493)
T ss_pred --cCc--cccccccceEEEecCCCCCCCcccCC-CcchHHHHhhhcc
Confidence 444 5578889999999988754 888887 7999999999974
No 58
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.68 E-value=5.1e-16 Score=125.94 Aligned_cols=99 Identities=11% Similarity=0.189 Sum_probs=81.6
Q ss_pred chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCC
Q 042284 326 TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKH 405 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g 405 (430)
++|++.+.. ..+++|+|.|+|+||++|+.|.|.++++++++++ .+.|++||+|+. ++++ +.|+|...||+++|++|
T Consensus 3 ~~~d~~i~~-~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev-~dva-~~y~I~amPtfvffkng 78 (114)
T cd02986 3 KEVDQAIKS-TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKV-PVYT-QYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHh-cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEecccc-HHHH-HhcCceeCcEEEEEECC
Confidence 467776652 2689999999999999999999999999999976 499999999999 9999 99999999999999999
Q ss_pred CcceeecCCC--------CCCHHHHHHHHHH
Q 042284 406 SAKPVKYPSE--------KRDVDSLMAFVNA 428 (430)
Q Consensus 406 ~~~~~~~~gg--------~~~~~~l~~~i~~ 428 (430)
+-....+..| ..+.++|++.|+.
T Consensus 79 kh~~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 79 QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred cEEEEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 8544444322 2345777777664
No 59
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.68 E-value=5.3e-16 Score=128.60 Aligned_cols=104 Identities=22% Similarity=0.515 Sum_probs=85.5
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC--CCeEEEEEEcCCC-chHHHHHhCCCCC
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG--MGVKVGKFRADGD-HKEFAKQKLQLVS 395 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Vd~~~~-~~~l~~~~~~V~~ 395 (430)
.+++++.++|++.+. +.+++++|+|||+||++|+.+.|.|+++++.+++ ..+.|+.+||+.. +++++ ++|+|++
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~-~~~~i~~ 78 (114)
T cd02992 2 PVIVLDAASFNSALL--GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALC-RDFGVTG 78 (114)
T ss_pred CeEECCHHhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHH-HhCCCCC
Confidence 588999999999886 3457999999999999999999999999998864 2589999998642 27899 9999999
Q ss_pred CCEEEEEeCCCcc---eeecCCCCCCHHHHHHH
Q 042284 396 FPTILFFPKHSAK---PVKYPSEKRDVDSLMAF 425 (430)
Q Consensus 396 ~Ptl~~~~~g~~~---~~~~~gg~~~~~~l~~~ 425 (430)
+||+++|++|... ...+.|..+..+++.+.
T Consensus 79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02992 79 YPTLRYFPPFSKEATDGLKQEGPERDVNELREA 111 (114)
T ss_pred CCEEEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence 9999999998743 34566655677766543
No 60
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.67 E-value=4.4e-16 Score=125.02 Aligned_cols=99 Identities=30% Similarity=0.660 Sum_probs=86.8
Q ss_pred EcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHc-CCCeEEEEEEcCCCchHHHHHhCCCCCCCEEE
Q 042284 322 SFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLE-GMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400 (430)
Q Consensus 322 ~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~-~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~ 400 (430)
+++.++|.+.+. ++++++|+||++||++|+.+.|.|+++++.++ ...+.|+.||++++ +.++ ++|+|.++||++
T Consensus 2 ~l~~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~-~~~~i~~~Pt~~ 76 (101)
T cd02961 2 ELTDDNFDELVK---DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-NDLC-SEYGVRGYPTIK 76 (101)
T ss_pred cccHHHHHHHHh---CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-HHHH-HhCCCCCCCEEE
Confidence 578889999886 66699999999999999999999999999994 23799999999998 9999 999999999999
Q ss_pred EEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 401 FFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 401 ~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
+|++++.....+.| ..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~g-~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEG-PRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCC-CcCHHHHHhhC
Confidence 99988444777777 57899998875
No 61
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.67 E-value=1.2e-15 Score=122.93 Aligned_cols=100 Identities=25% Similarity=0.450 Sum_probs=86.3
Q ss_pred cccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEE
Q 042284 323 FRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402 (430)
Q Consensus 323 lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~ 402 (430)
++.++|++.+. +.+++++|+||++||++|+.+.|.++++++.+++ ++.|+.||++++ +.++ ++|+|.++|++++|
T Consensus 1 i~~~~~~~~~~--~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~P~~~~~ 75 (101)
T TIGR01068 1 LTDANFDETIA--SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDEN-PDIA-AKYGIRSIPTLLLF 75 (101)
T ss_pred CCHHHHHHHHh--hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCC-HHHH-HHcCCCcCCEEEEE
Confidence 35678888765 3467999999999999999999999999999876 699999999999 8999 99999999999999
Q ss_pred eCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 403 PKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 403 ~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
++|+. ...+.| ..+.++|.+||++.
T Consensus 76 ~~g~~-~~~~~g-~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 76 KNGKE-VDRSVG-ALPKAALKQLINKN 100 (101)
T ss_pred eCCcE-eeeecC-CCCHHHHHHHHHhh
Confidence 98874 344445 68899999999874
No 62
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.65 E-value=8.7e-16 Score=125.17 Aligned_cols=95 Identities=17% Similarity=0.354 Sum_probs=79.8
Q ss_pred chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHH---HHHHHHHcCCCeEEEEEEcCCC---chHHHHHhCCCCCCCEE
Q 042284 326 TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSY---IELAEQLEGMGVKVGKFRADGD---HKEFAKQKLQLVSFPTI 399 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Vd~~~~---~~~l~~~~~~V~~~Ptl 399 (430)
++|++.++ .++++||+||++||++|+.+.|.+ +++++.+.+ ++.++.||++++ .++++ ++|+|.++||+
T Consensus 2 ~~~~~~~~---~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~-~~~~i~~~Pti 76 (104)
T cd02953 2 AALAQALA---QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALL-KRFGVFGPPTY 76 (104)
T ss_pred HHHHHHHH---cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHH-HHcCCCCCCEE
Confidence 46677665 889999999999999999999988 688888886 799999999873 26889 89999999999
Q ss_pred EEEeC--CCcceeecCCCCCCHHHHHHHHH
Q 042284 400 LFFPK--HSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 400 ~~~~~--g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
++|++ |+ ....+.| ..+.++|.++|+
T Consensus 77 ~~~~~~~g~-~~~~~~G-~~~~~~l~~~l~ 104 (104)
T cd02953 77 LFYGPGGEP-EPLRLPG-FLTADEFLEALE 104 (104)
T ss_pred EEECCCCCC-CCccccc-ccCHHHHHHHhC
Confidence 99984 54 3555666 799999998874
No 63
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.65 E-value=1.2e-15 Score=122.56 Aligned_cols=95 Identities=22% Similarity=0.379 Sum_probs=79.9
Q ss_pred cchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeC
Q 042284 325 RTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPK 404 (430)
Q Consensus 325 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~ 404 (430)
.++|++++... .+++++|+||++||++|+.+.|.|+++++.+.. .+.+++||+++. ++++ ++|+|.++||+++|++
T Consensus 2 ~~~~~~~~~~~-~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~-~~~~-~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 2 EEEFEELLKSD-ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEEL-PEIS-EKFEITAVPTFVFFRN 77 (97)
T ss_pred HHHHHHHHhhC-CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccC-HHHH-HhcCCccccEEEEEEC
Confidence 46788887622 269999999999999999999999999999744 799999999998 8999 9999999999999998
Q ss_pred CCcceeecCCCCCCHHHHHHHH
Q 042284 405 HSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 405 g~~~~~~~~gg~~~~~~l~~~i 426 (430)
|+. .....| .+.++|.+.|
T Consensus 78 g~~-~~~~~g--~~~~~l~~~~ 96 (97)
T cd02984 78 GTI-VDRVSG--ADPKELAKKV 96 (97)
T ss_pred CEE-EEEEeC--CCHHHHHHhh
Confidence 873 334444 5778888766
No 64
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.64 E-value=1.6e-15 Score=135.02 Aligned_cols=107 Identities=19% Similarity=0.281 Sum_probs=89.0
Q ss_pred CCceEccc-chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCC
Q 042284 318 QKLVSFRR-TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSF 396 (430)
Q Consensus 318 ~~v~~lt~-~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~ 396 (430)
..|.+++. ++|.+.+...+.+.+|||+||++||++|+.|.|.|++++..+.. +.|++||+++. .++ .+|+|.++
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d~~--~l~-~~f~v~~v 136 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRASAT--GAS-DEFDTDAL 136 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEeccch--hhH-HhCCCCCC
Confidence 56899999 99999886333446999999999999999999999999999975 99999999976 788 89999999
Q ss_pred CEEEEEeCCCcc--ee---ecCCCCCCHHHHHHHHHHh
Q 042284 397 PTILFFPKHSAK--PV---KYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 397 Ptl~~~~~g~~~--~~---~~~gg~~~~~~l~~~i~~~ 429 (430)
||+++|++|+.+ .+ ...|...+.+.|..+|.+.
T Consensus 137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999999853 11 1223467888999888753
No 65
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.64 E-value=3.2e-15 Score=128.76 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=80.5
Q ss_pred cchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc-hHHHHHhCCCCCCCEEEEEe
Q 042284 325 RTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH-KEFAKQKLQLVSFPTILFFP 403 (430)
Q Consensus 325 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~-~~l~~~~~~V~~~Ptl~~~~ 403 (430)
...|++.+. .++++||+|||+||++|+.+.|.++++++.+.+ .+.|+.||++... ..++ ++|+|.++||+++|+
T Consensus 10 ~~~~~~a~~---~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~-~~~~V~~iPt~v~~~ 84 (142)
T cd02950 10 STPPEVALS---NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEI-DRYRVDGIPHFVFLD 84 (142)
T ss_pred cCCHHHHHh---CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHH-HHcCCCCCCEEEEEC
Confidence 356677654 789999999999999999999999999999977 6788888887641 5788 899999999999996
Q ss_pred -CCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 404 -KHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 404 -~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+|+ ....+.| ..+.++|.++|+++
T Consensus 85 ~~G~-~v~~~~G-~~~~~~l~~~l~~l 109 (142)
T cd02950 85 REGN-EEGQSIG-LQPKQVLAQNLDAL 109 (142)
T ss_pred CCCC-EEEEEeC-CCCHHHHHHHHHHH
Confidence 565 2444555 67889999998875
No 66
>PTZ00051 thioredoxin; Provisional
Probab=99.61 E-value=6.4e-15 Score=118.52 Aligned_cols=94 Identities=20% Similarity=0.311 Sum_probs=78.0
Q ss_pred ceEccc-chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCE
Q 042284 320 LVSFRR-TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 320 v~~lt~-~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Pt 398 (430)
|.++++ ++|+++++ .+++++|+||++||++|+.+.|.++++++.+.+ +.|+.||++++ ..++ ++|+|.++||
T Consensus 2 v~~i~~~~~~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~-~~~~-~~~~v~~~Pt 74 (98)
T PTZ00051 2 VHIVTSQAEFESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDEL-SEVA-EKENITSMPT 74 (98)
T ss_pred eEEecCHHHHHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcch-HHHH-HHCCCceeeE
Confidence 344443 67777665 789999999999999999999999999998765 99999999998 8999 9999999999
Q ss_pred EEEEeCCCcceeecCCCCCCHHHHH
Q 042284 399 ILFFPKHSAKPVKYPSEKRDVDSLM 423 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~~~~l~ 423 (430)
+++|++|+. ...+.| ...++|.
T Consensus 75 ~~~~~~g~~-~~~~~G--~~~~~~~ 96 (98)
T PTZ00051 75 FKVFKNGSV-VDTLLG--ANDEALK 96 (98)
T ss_pred EEEEeCCeE-EEEEeC--CCHHHhh
Confidence 999999984 345555 4566664
No 67
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.60 E-value=7e-15 Score=118.26 Aligned_cols=87 Identities=17% Similarity=0.374 Sum_probs=77.6
Q ss_pred CCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCC
Q 042284 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSE 415 (430)
Q Consensus 336 ~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg 415 (430)
+.+++++|+||++||+.|+.+.|.++++++.+++ ++.++.+|++++ ++++ ++++|.++||+++|++|+. ...+.|
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~-~~l~-~~~~v~~vPt~~i~~~g~~-v~~~~g- 85 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDED-QEIA-EAAGIMGTPTVQFFKDKEL-VKEISG- 85 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC-HHHH-HHCCCeeccEEEEEECCeE-EEEEeC-
Confidence 4789999999999999999999999999999986 799999999999 9999 9999999999999998863 445555
Q ss_pred CCCHHHHHHHHH
Q 042284 416 KRDVDSLMAFVN 427 (430)
Q Consensus 416 ~~~~~~l~~~i~ 427 (430)
..+.++|.+||+
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 688899998874
No 68
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.59 E-value=6.4e-15 Score=132.86 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=109.1
Q ss_pred cEEEEechhHHHHHH-HHHHhcC----CCcEEEEecCCCCCH--HHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTG----RPFRVFSLDTGRLNP--ETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGL 147 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~----~~i~vi~~DTg~~fp--et~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 147 (430)
+++|++|||+||+++ +++.+.. .++.++|+|+|..+. ++.++++++++.+|++++++..... .+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~- 71 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALA--------PK- 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccc--------cC-
Confidence 489999999999776 7776654 379999999998774 9999999999999999987621110 00
Q ss_pred CCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecC--CCCc--ccCCCCCeEEEeccccc
Q 042284 148 FSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDT--SFEG--IDGGKGSLVKWNPLANV 221 (430)
Q Consensus 148 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~--~~~~--~~~~~~~~~~~~Pi~dW 221 (430)
.......+|...+...+.++.. +++.+++|++.+|.. .+.....+.... .... ......+...++||++|
T Consensus 72 ---~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~-e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~ 147 (185)
T cd01992 72 ---PGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQA-ETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGI 147 (185)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHH-HHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCC
Confidence 1123445788888888888776 567999999999974 442221111000 0000 00123467789999999
Q ss_pred chHHHHHHHHHcCCCCcccc
Q 042284 222 KGQDIWNFLRAMNIPINSLH 241 (430)
Q Consensus 222 t~~dVw~yi~~~~lp~~pLY 241 (430)
++.|||.|.+++|||+.+-+
T Consensus 148 ~k~eI~~~~~~~~l~~~~~~ 167 (185)
T cd01992 148 TRAEIEAYLRENGLPWWEDP 167 (185)
T ss_pred CHHHHHHHHHHcCCCeEECC
Confidence 99999999999999987654
No 69
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.59 E-value=9.2e-15 Score=150.30 Aligned_cols=105 Identities=23% Similarity=0.557 Sum_probs=94.0
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCC--CeEEEEEEcCCCchHHHHHhCCCCCC
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM--GVKVGKFRADGDHKEFAKQKLQLVSF 396 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~--~v~~~~Vd~~~~~~~l~~~~~~V~~~ 396 (430)
.|.+|+.++|+.+++ ++++++|+|||+||++|+.+.|.+.++++.+.+. ++.|+.|||+++ +++| ++|+|.++
T Consensus 2 ~v~~l~~~~~~~~i~---~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~-~~~~i~~~ 76 (462)
T TIGR01130 2 DVLVLTKDNFDDFIK---SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLA-QKYGVSGY 76 (462)
T ss_pred CceECCHHHHHHHHh---cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHH-HhCCCccc
Confidence 588999999999886 7889999999999999999999999999988753 499999999999 9999 99999999
Q ss_pred CEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 397 PTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 397 Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
||+++|++|+.....+.| .++.++|.+||.+.
T Consensus 77 Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNG-PRDADGIVKYMKKQ 108 (462)
T ss_pred cEEEEEeCCccceeEecC-CCCHHHHHHHHHHh
Confidence 999999999842467777 68999999999864
No 70
>PTZ00102 disulphide isomerase; Provisional
Probab=99.59 E-value=1.5e-14 Score=149.69 Aligned_cols=104 Identities=25% Similarity=0.582 Sum_probs=94.3
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC--CCeEEEEEEcCCCchHHHHHhCCCCC
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG--MGVKVGKFRADGDHKEFAKQKLQLVS 395 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Vd~~~~~~~l~~~~~~V~~ 395 (430)
..|..|+.++|++++. +++.++|+|||+||++|+.+.|.|+++++.+.. .++.|+.|||+++ .++| ++|+|.+
T Consensus 32 ~~v~~l~~~~f~~~i~---~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~-~~~~i~~ 106 (477)
T PTZ00102 32 EHVTVLTDSTFDKFIT---ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELA-QEFGVRG 106 (477)
T ss_pred CCcEEcchhhHHHHHh---cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHH-HhcCCCc
Confidence 5799999999999886 678999999999999999999999999988764 2699999999999 9999 9999999
Q ss_pred CCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 396 ~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+||+++|++|+ ...|.| .++.+.|.+|++++
T Consensus 107 ~Pt~~~~~~g~--~~~y~g-~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 107 YPTIKFFNKGN--PVNYSG-GRTADGIVSWIKKL 137 (477)
T ss_pred ccEEEEEECCc--eEEecC-CCCHHHHHHHHHHh
Confidence 99999999998 448887 69999999999875
No 71
>PTZ00102 disulphide isomerase; Provisional
Probab=99.59 E-value=1.7e-14 Score=149.11 Aligned_cols=108 Identities=26% Similarity=0.523 Sum_probs=96.5
Q ss_pred CCCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC-CCeEEEEEEcCCCchHHHHHhCCCCC
Q 042284 317 SQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG-MGVKVGKFRADGDHKEFAKQKLQLVS 395 (430)
Q Consensus 317 ~~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Vd~~~~~~~l~~~~~~V~~ 395 (430)
+..|..++.++|++.+. +.+++|+|+|||+||++|+.+.|.|+++++.+++ ..+.++.+|++.+ ..++ ++++|++
T Consensus 356 ~~~v~~l~~~~f~~~v~--~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-~~~~-~~~~v~~ 431 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVF--KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-ETPL-EEFSWSA 431 (477)
T ss_pred CCCeEEecccchHHHHh--cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-ccch-hcCCCcc
Confidence 45799999999999753 4789999999999999999999999999999876 3689999999999 7888 8999999
Q ss_pred CCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 396 ~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+||+++|++|+.....+.| .++.++|.+||++.
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G-~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEG-ERTVEGFKEFVNKH 464 (477)
T ss_pred cCeEEEEECCCcceeEecC-cCCHHHHHHHHHHc
Confidence 9999999999865667887 69999999999874
No 72
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.58 E-value=3e-15 Score=137.65 Aligned_cols=101 Identities=26% Similarity=0.629 Sum_probs=87.1
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC--CCeEEEEEEcCCCchHHHHHhCCCCCC
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG--MGVKVGKFRADGDHKEFAKQKLQLVSF 396 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Vd~~~~~~~l~~~~~~V~~~ 396 (430)
.|..|+ +.|.+ ...+..|+|+||||||++|+++.|+|+++.-.+++ ..++++++||+.. +.++ .+|+|++|
T Consensus 29 ~VeDLd-dkFkd----nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-~aiA-nefgiqGY 101 (468)
T KOG4277|consen 29 AVEDLD-DKFKD----NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-PAIA-NEFGIQGY 101 (468)
T ss_pred hhhhhh-HHhhh----cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-hhhH-hhhccCCC
Confidence 355554 33443 34678999999999999999999999999888876 3789999999999 9999 99999999
Q ss_pred CEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 397 PTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 397 Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
||+.+|+++. .+.|.| .+..+.|++|..++
T Consensus 102 PTIk~~kgd~--a~dYRG-~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 102 PTIKFFKGDH--AIDYRG-GREKDAIIEFAHRC 131 (468)
T ss_pred ceEEEecCCe--eeecCC-CccHHHHHHHHHhc
Confidence 9999999998 899998 59999999998765
No 73
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.57 E-value=2.1e-14 Score=118.85 Aligned_cols=89 Identities=18% Similarity=0.309 Sum_probs=76.7
Q ss_pred CCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcc-eeecCC
Q 042284 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAK-PVKYPS 414 (430)
Q Consensus 336 ~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~-~~~~~g 414 (430)
..++.++|+||++||++|+.+.|.+++++..+ + .+.|..||++++ ++++ ++|+|.++||+++|++|+.. ...+.|
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~~-~~l~-~~~~v~~vPt~~i~~~g~~~~~~~~~G 95 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDED-KEKA-EKYGVERVPTTIFLQDGGKDGGIRYYG 95 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCcC-HHHH-HHcCCCcCCEEEEEeCCeecceEEEEe
Confidence 36778999999999999999999999999887 3 599999999999 9999 99999999999999987532 345666
Q ss_pred CCCCHHHHHHHHHHh
Q 042284 415 EKRDVDSLMAFVNAL 429 (430)
Q Consensus 415 g~~~~~~l~~~i~~~ 429 (430)
..+..+|.+||+.+
T Consensus 96 -~~~~~el~~~i~~i 109 (113)
T cd02975 96 -LPAGYEFASLIEDI 109 (113)
T ss_pred -cCchHHHHHHHHHH
Confidence 67788999998865
No 74
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.57 E-value=3.3e-14 Score=119.06 Aligned_cols=101 Identities=9% Similarity=0.157 Sum_probs=79.1
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc----------hHHHH
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH----------KEFAK 388 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~----------~~l~~ 388 (430)
.+..++.++|.+.++ +++.++|+|+++||++|+.+.|.|++++++. ++.|+.||++.+. .++.
T Consensus 7 ~~~~it~~~~~~~i~---~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~- 79 (122)
T TIGR01295 7 GLEVTTVVRALEALD---KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR- 79 (122)
T ss_pred cceecCHHHHHHHHH---cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-
Confidence 456677788888775 7889999999999999999999999999883 4678888888541 2455
Q ss_pred HhCC----CCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 389 QKLQ----LVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 389 ~~~~----V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
++|+ |.++||+++|++|+. .....|+..+.++|.+|+.
T Consensus 80 ~~~~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 80 SRFGIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHcCCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHhh
Confidence 5655 556999999999985 3344454677999999874
No 75
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-14 Score=130.35 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=86.5
Q ss_pred ceEc-ccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCE
Q 042284 320 LVSF-RRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 320 v~~l-t~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Pt 398 (430)
|+.+ ++..|+..+. ....+.++|+|+|.||+||+.+.|.|..++.+|++ ..|++||+|+. ...+ ..++|+..||
T Consensus 3 Vi~v~~d~df~~~ls-~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~c-~~ta-a~~gV~amPT 77 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELS-AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDEC-RGTA-ATNGVNAMPT 77 (288)
T ss_pred eEEecCcHHHHHhhh-ccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHHh-hchh-hhcCcccCce
Confidence 4444 3467887664 44578999999999999999999999999999986 99999999999 8888 8999999999
Q ss_pred EEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 399 ILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+++|.+|.+ ...+.| .++..|++.|.++
T Consensus 78 Fiff~ng~k-id~~qG--Ad~~gLe~kv~~~ 105 (288)
T KOG0908|consen 78 FIFFRNGVK-IDQIQG--ADASGLEEKVAKY 105 (288)
T ss_pred EEEEecCeE-eeeecC--CCHHHHHHHHHHH
Confidence 999999986 566666 6788888877764
No 76
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.55 E-value=4.6e-14 Score=118.99 Aligned_cols=93 Identities=22% Similarity=0.475 Sum_probs=75.9
Q ss_pred hcCCC-CcEEEEEeCCCCHhHHHHHHHHH---HHHHHHcCCCeEEEEEEcCCC------------chHHHHHhCCCCCCC
Q 042284 334 LQNRE-DPWLIVLYAPWCHFCQAMEGSYI---ELAEQLEGMGVKVGKFRADGD------------HKEFAKQKLQLVSFP 397 (430)
Q Consensus 334 ~~~~~-k~vlV~Fya~wC~~C~~~~p~~~---~la~~~~~~~v~~~~Vd~~~~------------~~~l~~~~~~V~~~P 397 (430)
..+++ ++++|+|||+||++|+.+.|.+. .+.+.+.+ ++.++.||++.+ +.+++ .+|+|.++|
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~-~~~~v~~~P 86 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELA-RKYRVRFTP 86 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHH-HHcCCcccc
Confidence 33478 99999999999999999999884 66666765 689999999863 26888 899999999
Q ss_pred EEEEEeCC-CcceeecCCCCCCHHHHHHHHHHh
Q 042284 398 TILFFPKH-SAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 398 tl~~~~~g-~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
|+++|+++ ++......| ..+.+.|.++|+.+
T Consensus 87 t~~~~~~~gg~~~~~~~G-~~~~~~~~~~l~~~ 118 (125)
T cd02951 87 TVIFLDPEGGKEIARLPG-YLPPDEFLAYLEYV 118 (125)
T ss_pred EEEEEcCCCCceeEEecC-CCCHHHHHHHHHHH
Confidence 99999886 444555555 68889999998865
No 77
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.55 E-value=2.5e-14 Score=129.00 Aligned_cols=105 Identities=12% Similarity=0.174 Sum_probs=85.6
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCC
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~P 397 (430)
+.|.+++.++|...+...+.+.+|||+||++||++|+.|.|.|+++|.+|.. +.|++||++.. . ..|+|.++|
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad~~----~-~~~~i~~lP 154 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIISTQC----I-PNYPDKNLP 154 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhHHh----H-hhCCCCCCC
Confidence 5799999999998765333456899999999999999999999999999975 99999999743 5 789999999
Q ss_pred EEEEEeCCCcc--e---eecCCCCCCHHHHHHHHHHh
Q 042284 398 TILFFPKHSAK--P---VKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 398 tl~~~~~g~~~--~---~~~~gg~~~~~~l~~~i~~~ 429 (430)
|+++|++|+.+ . ....|...+.+.|..+|.+.
T Consensus 155 Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 155 TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 99999999842 1 11223367888998888653
No 78
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.53 E-value=2.5e-14 Score=132.08 Aligned_cols=101 Identities=23% Similarity=0.493 Sum_probs=89.9
Q ss_pred cccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC----CCeEEEEEEcCCCchHHHHHhCCCCCCCE
Q 042284 323 FRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG----MGVKVGKFRADGDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 323 lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~----~~v~~~~Vd~~~~~~~l~~~~~~V~~~Pt 398 (430)
++.+|++.++. ....|+|.|||+||+.++.++|+|++.|..++. .++.+++|||+.+ .+|+ .+|.|..|||
T Consensus 1 lt~~N~~~il~---s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia-~ky~I~KyPT 75 (375)
T KOG0912|consen 1 LTSENIDSILD---SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIA-DKYHINKYPT 75 (375)
T ss_pred CccccHHHhhc---cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHh-hhhccccCce
Confidence 45688888876 789999999999999999999999999888754 4799999999999 8999 9999999999
Q ss_pred EEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 399 ILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+-+|.+|...-..|.| .++++.|.+||++.
T Consensus 76 lKvfrnG~~~~rEYRg-~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 76 LKVFRNGEMMKREYRG-QRSVEALIEFIEKQ 105 (375)
T ss_pred eeeeeccchhhhhhcc-chhHHHHHHHHHHH
Confidence 9999999864456888 79999999999863
No 79
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.53 E-value=8.5e-14 Score=126.03 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=105.5
Q ss_pred cEEEEechhHHHHHH-HHHHhc----CCCcEEEEecCCCCC--HHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLT----GRPFRVFSLDTGRLN--PETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGL 147 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~----~~~i~vi~~DTg~~f--pet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 147 (430)
+++|++|||+||++| +++.+. +.++.++|+|.|... ++..+.++++++.+|+++.++.-...... ...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~-- 75 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALA---KGK-- 75 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhc---ccc--
Confidence 489999999999776 666553 457889999999864 66788999999999999877654322110 011
Q ss_pred CCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeec-----CCCCcccCCCCCeEEEecccc
Q 042284 148 FSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQID-----TSFEGIDGGKGSLVKWNPLAN 220 (430)
Q Consensus 148 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d-----~~~~~~~~~~~~~~~~~Pi~d 220 (430)
.......|...+..-+.+... +++.+++|.+.+|.. .+..+..+... ..........++...++||++
T Consensus 76 ----~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~-e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~ 150 (189)
T TIGR02432 76 ----KKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQA-ETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLG 150 (189)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHH-HHHHHHHHcCCCcccccCCccccccCCCCEEECCCCC
Confidence 112333466677777777666 567999999999964 43211111100 000000000115678999999
Q ss_pred cchHHHHHHHHHcCCCCcccc
Q 042284 221 VKGQDIWNFLRAMNIPINSLH 241 (430)
Q Consensus 221 Wt~~dVw~yi~~~~lp~~pLY 241 (430)
|++.||+.|.+.+|||+..-+
T Consensus 151 ~~k~ei~~~~~~~~lp~~~~~ 171 (189)
T TIGR02432 151 ISKSEIEEYLKENGLPWFEDE 171 (189)
T ss_pred CCHHHHHHHHHHcCCCeeeCC
Confidence 999999999999999987654
No 80
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.51 E-value=9.8e-14 Score=114.84 Aligned_cols=95 Identities=18% Similarity=0.284 Sum_probs=74.7
Q ss_pred chHHHHHHhcCCCCcEEEEEeC-------CCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC------chHHHHHhCC
Q 042284 326 TGIENLARLQNREDPWLIVLYA-------PWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD------HKEFAKQKLQ 392 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya-------~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~------~~~l~~~~~~ 392 (430)
++|.+.+. ...+++++|+||| +||++|+.+.|.++++++++++ ++.|++||+++. +.++. .+++
T Consensus 10 ~~f~~~i~-~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~-~~~~ 86 (119)
T cd02952 10 EEFLKLLK-SHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFR-TDPK 86 (119)
T ss_pred HHHHHHHH-hcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhH-hccC
Confidence 55666654 1237899999999 9999999999999999999985 699999999763 15888 8999
Q ss_pred CC-CCCEEEEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 393 LV-SFPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 393 V~-~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
|. ++||+++|++|+. .+...- .+.+.+..|+
T Consensus 87 I~~~iPT~~~~~~~~~-l~~~~c--~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQR-LVEDEC--LQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCce-ecchhh--cCHHHHHHhh
Confidence 98 9999999987763 343332 4566666654
No 81
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.51 E-value=1.9e-13 Score=107.43 Aligned_cols=92 Identities=29% Similarity=0.497 Sum_probs=78.5
Q ss_pred hHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCC
Q 042284 327 GIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 327 ~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
+|+..+. .+++++|+||++||++|+.+.+.++++++. .+ ++.|+.+|++.+ ++++ ++|++.++|++++|.+|+
T Consensus 2 ~~~~~~~---~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~-~~~~-~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 2 EFEELIK---SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDEN-PELA-EEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred chHHHHh---cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCC-hhHH-HhcCcccccEEEEEECCE
Confidence 5666665 559999999999999999999999999988 33 699999999998 8999 999999999999999987
Q ss_pred cceeecCCCCCCHHHHHHHHH
Q 042284 407 AKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 407 ~~~~~~~gg~~~~~~l~~~i~ 427 (430)
. ...+.| ..+.+.|.++|+
T Consensus 75 ~-~~~~~g-~~~~~~l~~~i~ 93 (93)
T cd02947 75 E-VDRVVG-ADPKEELEEFLE 93 (93)
T ss_pred E-EEEEec-CCCHHHHHHHhC
Confidence 4 455555 577899988873
No 82
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.50 E-value=1.6e-14 Score=133.26 Aligned_cols=151 Identities=23% Similarity=0.359 Sum_probs=111.4
Q ss_pred cEEEEechhHHHHHH-HHHHhc------------CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHH
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLT------------GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQAL 141 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~------------~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~ 141 (430)
.++.||.||||++++ +++.+. -..++.+|+|.+..||+..+|+.....+|.+.+..+.-.. ....
T Consensus 84 ~~a~SFnggkdc~vll~ll~~~l~~~~~~~~~~p~~~i~~~~~~~~~~fp~~~~fv~~~~~~y~~~l~~~~~~~-~lk~- 161 (282)
T KOG2644|consen 84 EMALSFNGGKDCTVLLLLLMRYLRDEYAEKLDQPSTAIPAVYIDVEDSFPELEDFVSVCVFKYRPQLSRLSGAG-RLKK- 161 (282)
T ss_pred HHHHhhCCCCChHHHHHHHHHHhcchhhhhccCCCccccceeecCCCCcccccchHHHHHHhhccchhhccCcc-hHHH-
Confidence 478899999999776 554441 1247799999999999999999999999987765321110 0000
Q ss_pred HHhcCCCCCCccchhhhhhhhchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEeccccc
Q 042284 142 VRTKGLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANV 221 (430)
Q Consensus 142 ~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dW 221 (430)
--+...|+.| ..++++.|+|+.+.. --+..++.. .+.+|++++|..|+++|
T Consensus 162 ---------------~~~~~~~~~~------~~k~i~vg~r~~dp~-g~~~~~~~~-------td~~wp~~~r~~pll~w 212 (282)
T KOG2644|consen 162 ---------------ALSLFKKVDP------ESKAILVGIRNTDPV-GEALAPFER-------TDSLWPQFMRLLPLLEW 212 (282)
T ss_pred ---------------HHHHhhhhhh------hhhhHhhhhhhCCCc-cceecceee-------ccCCchhhhhhcccccc
Confidence 0111122222 556788999999875 333333322 23478999999999999
Q ss_pred chHHHHHHHHHcCCCCccccccCCcccCCcCCCCC
Q 042284 222 KGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRP 256 (430)
Q Consensus 222 t~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~ 256 (430)
+..|||.|++..++|||.||++||+|+|-..-|.+
T Consensus 213 s~t~vw~~l~~~~~p~c~ly~qg~TslG~~~~t~p 247 (282)
T KOG2644|consen 213 SYTDVWDLLREGNLPYCGLYDQGYTSLGGRSNTSP 247 (282)
T ss_pred hHHHHHHHHhcCCCceeeeecccccccccccCCCC
Confidence 99999999999999999999999999999888875
No 83
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.50 E-value=7.7e-14 Score=125.69 Aligned_cols=159 Identities=16% Similarity=0.229 Sum_probs=102.3
Q ss_pred cEEEEechhHHHHHH-HHHHhc------CCCcEEEEecCCCCC--HHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhc
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLT------GRPFRVFSLDTGRLN--PETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTK 145 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~------~~~i~vi~~DTg~~f--pet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~ 145 (430)
+++|++|||+||++| +++.+. +.++.++|+|+|... ++..++++++++++|+++.++..... + ......
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~~ 78 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEE-Y-TDDIEV 78 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhh-c-chhhhh
Confidence 489999999999876 666554 236778999999864 78899999999999999877755421 1 000000
Q ss_pred CCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeee------ecCCCCcccCCCCCeEEEec
Q 042284 146 GLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQ------IDTSFEGIDGGKGSLVKWNP 217 (430)
Q Consensus 146 g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~------~d~~~~~~~~~~~~~~~~~P 217 (430)
..+ ........|...+...+.+..+ +++++++|.++||-. ....+.... ..+... ......+...++|
T Consensus 79 ~~~--~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~-et~l~~~~~g~~~~~~~~~~~-~~~~~~~~~iirP 154 (185)
T cd01993 79 KKR--GGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEA-ETLLMNLLRGGILRLMRPGPI-LYLDEGDVTRIRP 154 (185)
T ss_pred hcc--CCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHH-HHHHHHHHhcCHHHHcCCCCc-cccCCCCceEEee
Confidence 000 0112223355566666666665 567999999999864 321111100 000000 0001134678899
Q ss_pred ccccchHHHHHHHHHcCCCCcc
Q 042284 218 LANVKGQDIWNFLRAMNIPINS 239 (430)
Q Consensus 218 i~dWt~~dVw~yi~~~~lp~~p 239 (430)
|.+|++.||+.|++.+|||+.+
T Consensus 155 L~~~~k~eI~~~~~~~~l~~~~ 176 (185)
T cd01993 155 LVYVREKEIVLYAELNGLPFVE 176 (185)
T ss_pred cccCCHHHHHHHHHHcCCCccc
Confidence 9999999999999999998854
No 84
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.49 E-value=2.7e-13 Score=109.98 Aligned_cols=88 Identities=19% Similarity=0.278 Sum_probs=78.9
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCC--CCCEEEEEeC--CCcceeec
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLV--SFPTILFFPK--HSAKPVKY 412 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~--~~Ptl~~~~~--g~~~~~~~ 412 (430)
.++++++.|+++||++|+.+.|.++++|+++++ ++.|+.||++++ +.++ +.|+|. ++|++++|++ |+ ...+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~-~~~~-~~~~i~~~~~P~~~~~~~~~~~--k~~~ 85 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDF-GRHL-EYFGLKEEDLPVIAIINLSDGK--KYLM 85 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhh-HHHH-HHcCCChhhCCEEEEEeccccc--ccCC
Confidence 368999999999999999999999999999998 799999999998 8999 999999 9999999998 54 4555
Q ss_pred CCCCCCHHHHHHHHHHh
Q 042284 413 PSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 413 ~gg~~~~~~l~~~i~~~ 429 (430)
.++..+.++|.+||+++
T Consensus 86 ~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 86 PEEELTAESLEEFVEDF 102 (103)
T ss_pred CccccCHHHHHHHHHhh
Confidence 55456999999999875
No 85
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.47 E-value=3.7e-13 Score=138.41 Aligned_cols=106 Identities=25% Similarity=0.546 Sum_probs=93.0
Q ss_pred CCCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC-C-CeEEEEEEcCCCchHHHHHhCCCC
Q 042284 317 SQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG-M-GVKVGKFRADGDHKEFAKQKLQLV 394 (430)
Q Consensus 317 ~~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~-~v~~~~Vd~~~~~~~l~~~~~~V~ 394 (430)
...|..|+.++|++++. +.++++||+|||+||++|+.+.|.++++++.+++ . .+.|+.+|++.+ ++. . ++|.
T Consensus 345 ~~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~-~-~~i~ 418 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVL--DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVP-P-FEVE 418 (462)
T ss_pred CCccEEeeCcCHHHHhc--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccC-C-CCcc
Confidence 35789999999999874 5689999999999999999999999999999987 3 799999999987 566 5 9999
Q ss_pred CCCEEEEEeCCCc-ceeecCCCCCCHHHHHHHHHHh
Q 042284 395 SFPTILFFPKHSA-KPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 395 ~~Ptl~~~~~g~~-~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
++||+++|++|+. .+..+.| ..+.+.|.+||++.
T Consensus 419 ~~Pt~~~~~~~~~~~~~~~~g-~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 419 GFPTIKFVPAGKKSEPVPYDG-DRTLEDFSKFIAKH 453 (462)
T ss_pred ccCEEEEEeCCCCcCceEecC-cCCHHHHHHHHHhc
Confidence 9999999999886 3577877 68999999999864
No 86
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.40 E-value=2e-12 Score=117.64 Aligned_cols=152 Identities=20% Similarity=0.307 Sum_probs=113.8
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHh-cCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHH
Q 042284 62 LEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKL-TGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQ 139 (430)
Q Consensus 62 ~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~-~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~ 139 (430)
++.|+.+++..+ +++|+||||.||++| .++.+ .+.++.++++|+.+..+..++-+...++++|++..++.-.... .
T Consensus 7 l~~l~~~ik~~~-kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~-~ 84 (269)
T COG1606 7 LERLKKAIKEKK-KVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD-P 84 (269)
T ss_pred HHHHHHHHhhcC-eEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc-h
Confidence 567777777766 599999999999887 56644 4788999999999999989999999999999998777433221 1
Q ss_pred HHHHhcCCCCCCccchhhhhhhhchHHHHHHHh-----cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEE
Q 042284 140 ALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK-----GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVK 214 (430)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~-----~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~ 214 (430)
++ ..++..-|+.+|..-+.-... |+++++.|++++|..+.|..+.+..... -
T Consensus 85 ~~----------~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RPG~rA~kE~g-------------i 141 (269)
T COG1606 85 EF----------KENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRPGLRALKELG-------------I 141 (269)
T ss_pred hh----------ccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCcchhhHHhcC-------------C
Confidence 11 113334567777655443332 7899999999999987777776654321 2
Q ss_pred Eecccc--cchHHHHHHHHHcCCCCc
Q 042284 215 WNPLAN--VKGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 215 ~~Pi~d--Wt~~dVw~yi~~~~lp~~ 238 (430)
..|+++ .+..||..|.+..|+++.
T Consensus 142 ~sPl~e~gitk~eIre~a~~lgl~~~ 167 (269)
T COG1606 142 RSPLAEFGITKKEIREIAKSLGLPTW 167 (269)
T ss_pred CChHHHhCCcHHHHHHHHHHcCCCcc
Confidence 358865 599999999999999877
No 87
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.39 E-value=3.4e-12 Score=98.92 Aligned_cols=80 Identities=16% Similarity=0.325 Sum_probs=69.6
Q ss_pred EEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHH
Q 042284 341 WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVD 420 (430)
Q Consensus 341 vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~ 420 (430)
.+..||++||++|+.+.|.++++++.++. .+.+..||++++ ++++ ++|+|.++||+++ +|+ ..+.| ..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~vPt~~~--~g~---~~~~G-~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN-PQKA-MEYGIMAVPAIVI--NGD---VEFIG-APTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC-HHHH-HHcCCccCCEEEE--CCE---EEEec-CCCHH
Confidence 46789999999999999999999999976 699999999998 9999 8999999999986 665 35556 57899
Q ss_pred HHHHHHHHh
Q 042284 421 SLMAFVNAL 429 (430)
Q Consensus 421 ~l~~~i~~~ 429 (430)
+|.++|++.
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999999864
No 88
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.38 E-value=6.4e-12 Score=119.28 Aligned_cols=168 Identities=17% Similarity=0.223 Sum_probs=105.2
Q ss_pred HHHHHHHHHHc-----CCcEEEEechhHHHHHH-HHHHhc------CCCcEEEEecCCCC-CHHHHHHHHHHHHHhCCcE
Q 042284 62 LEIMDKAFQKF-----GNDIAIAFSGAEDVVLI-EYAKLT------GRPFRVFSLDTGRL-NPETHQFFDTVEKHYGIRI 128 (430)
Q Consensus 62 ~~~i~~~~~~~-----~~~i~vs~SGGKDS~vl-~l~~~~------~~~i~vi~~DTg~~-fpet~~~~~~~~~~~gl~i 128 (430)
...+..++++| +++++|++|||+||++| +++.+. +.++.++++|.|.. +++ ++++++++++|+++
T Consensus 13 ~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~--~~~~~~~~~lgI~~ 90 (258)
T PRK10696 13 RRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE--HVLPEYLESLGVPY 90 (258)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH--HHHHHHHHHhCCCE
Confidence 44566667766 35799999999999776 666442 23567899999863 333 36789999999999
Q ss_pred EEEccCchHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeec--CCCCc
Q 042284 129 EYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQID--TSFEG 204 (430)
Q Consensus 129 ~~~~p~~~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d--~~~~~ 204 (430)
+++..+...........+ .....-|...+...+.+... +++.+++|+..||.. ....+..+... ..+..
T Consensus 91 ~v~~~~~~~~~~~~~~~~------~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~-Et~l~nl~rg~~l~~m~~ 163 (258)
T PRK10696 91 HIEEQDTYSIVKEKIPEG------KTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL-ETLFLNMFYGGKLKAMPP 163 (258)
T ss_pred EEEEecchhhhhhhhccC------CChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH-HHHHHHHHhCCcccccCC
Confidence 877644321110000011 11222266666677777666 667999999999854 31111110000 00000
Q ss_pred c-cCCCCCeEEEecccccchHHHHHHHHHcCCCCc
Q 042284 205 I-DGGKGSLVKWNPLANVKGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 205 ~-~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~ 238 (430)
. ....+++..++||+++++.||+.|.+.+|||+.
T Consensus 164 ~~~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~ 198 (258)
T PRK10696 164 KLLSDDGKHIVIRPLAYVAEKDIIKFAEAKEFPII 198 (258)
T ss_pred eeecCCCceeEEecCccCCHHHHHHHHHHcCCCEe
Confidence 0 001134678999999999999999999999974
No 89
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.34 E-value=1.6e-11 Score=116.12 Aligned_cols=151 Identities=18% Similarity=0.274 Sum_probs=104.7
Q ss_pred HHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHH
Q 042284 63 EIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQAL 141 (430)
Q Consensus 63 ~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~ 141 (430)
+.|+..++.+++ ++|+||||.||+++ +++.+.+.++..+++|.+...++..+.++++++++|++++++.-+. +...
T Consensus 3 ~~l~~~l~~~~~-vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~--~~~~ 79 (252)
T TIGR00268 3 ENLRNFLKEFKK-VLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDK--MINP 79 (252)
T ss_pred HHHHHHHHhcCC-EEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHH--HHHH
Confidence 567777888765 99999999999776 7777777788899999987777888999999999999988775432 1111
Q ss_pred HHhcCCCCCCccchhhhhhhhchHHHH---HHHh--cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEe
Q 042284 142 VRTKGLFSFYEDGHQECCRIRKVRPLK---RALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWN 216 (430)
Q Consensus 142 ~~~~g~~~~~~~~~~~cc~~~K~~pl~---~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~ 216 (430)
.... ...-|+.+|..-+. +..+ +++++++|..++|-...|..+...... + -.+
T Consensus 80 ~~~n---------~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~~~-----------~--~~~ 137 (252)
T TIGR00268 80 FRAN---------VEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVKEF-----------N--GVS 137 (252)
T ss_pred HHhC---------CCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHHHHHHc-----------C--CCC
Confidence 1111 11225555554433 2222 567899999998854334333222111 1 138
Q ss_pred cccc--cchHHHHHHHHHcCCCCc
Q 042284 217 PLAN--VKGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 217 Pi~d--Wt~~dVw~yi~~~~lp~~ 238 (430)
|+.+ ++++||..|.++.|||+.
T Consensus 138 PL~~~~l~K~eIr~la~~~gl~~~ 161 (252)
T TIGR00268 138 PWAEFGITKKEIREIAKSLGISFP 161 (252)
T ss_pred cchhcCCCHHHHHHHHHHcCCCcc
Confidence 9976 799999999999999864
No 90
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.34 E-value=2.7e-12 Score=106.76 Aligned_cols=97 Identities=15% Similarity=0.342 Sum_probs=65.4
Q ss_pred HHHHHH-hcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCC--CCEEEEEe-
Q 042284 328 IENLAR-LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS--FPTILFFP- 403 (430)
Q Consensus 328 f~~~i~-~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~--~Ptl~~~~- 403 (430)
+++.++ ...+++++||+|||+||++|+.+.|.+.+....... ...|+.||++.+...+. ..|++.+ +||+++|.
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~-~~~~~~g~~vPt~~f~~~ 85 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKD-EEFSPDGGYIPRILFLDP 85 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchh-hhcccCCCccceEEEECC
Confidence 444433 234789999999999999999999999988765543 34566666666522455 6889987 99999996
Q ss_pred CCCcce--eecCCCCCCHHHHHHHHH
Q 042284 404 KHSAKP--VKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 404 ~g~~~~--~~~~gg~~~~~~l~~~i~ 427 (430)
+|+... ....| ..+.+.+.+.|+
T Consensus 86 ~Gk~~~~~~~~~~-~~~~~~f~~~~~ 110 (117)
T cd02959 86 SGDVHPEIINKKG-NPNYKYFYSSAA 110 (117)
T ss_pred CCCCchhhccCCC-CccccccCCCHH
Confidence 666421 23333 345554444443
No 91
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.4e-12 Score=128.21 Aligned_cols=106 Identities=28% Similarity=0.647 Sum_probs=93.1
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC-CCeEEEEEEcCCCchHHHHHhCCCCCCC
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG-MGVKVGKFRADGDHKEFAKQKLQLVSFP 397 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Vd~~~~~~~l~~~~~~V~~~P 397 (430)
.|..++..+|+..+. +.+..++|.||+|||++|+.+.|.|++++..+.. ..+.++.+|++.. ..++ ++++|.++|
T Consensus 145 ~v~~l~~~~~~~~~~--~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~-~~~~-~~~~v~~~P 220 (383)
T KOG0191|consen 145 EVFELTKDNFDETVK--DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH-KSLA-SRLEVRGYP 220 (383)
T ss_pred ceEEccccchhhhhh--ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH-HHHh-hhhcccCCc
Confidence 499999999999764 5678999999999999999999999999999874 4899999999977 8999 999999999
Q ss_pred EEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 398 TILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 398 tl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
|+.+|.+|.. ...+..+.++.+.|++|+++.
T Consensus 221 t~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 221 TLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred eEEEecCCCc-ccccccccccHHHHHHHHHhh
Confidence 9999999985 344445579999999999864
No 92
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.33 E-value=3.9e-12 Score=117.56 Aligned_cols=89 Identities=19% Similarity=0.325 Sum_probs=72.2
Q ss_pred CCcEEEEEeC---CCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCC
Q 042284 338 EDPWLIVLYA---PWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPS 414 (430)
Q Consensus 338 ~k~vlV~Fya---~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~g 414 (430)
+...++.|++ +||++|+.+.|.++++++.+..-.+.++.+|.+++ ++++ ++|+|.++||+++|++|+.....+.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-~~l~-~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-KEEA-EKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-HHHH-HHcCCCccCEEEEEeCCeeeEEEEee
Confidence 4445666888 99999999999999999998542355777777788 9999 99999999999999999853346666
Q ss_pred CCCCHHHHHHHHHHh
Q 042284 415 EKRDVDSLMAFVNAL 429 (430)
Q Consensus 415 g~~~~~~l~~~i~~~ 429 (430)
..+.++|.+||+.+
T Consensus 97 -~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 97 -IPAGYEFAALIEDI 110 (215)
T ss_pred -cCCHHHHHHHHHHH
Confidence 67888898888764
No 93
>PTZ00062 glutaredoxin; Provisional
Probab=99.30 E-value=1.4e-11 Score=111.66 Aligned_cols=89 Identities=7% Similarity=0.096 Sum_probs=73.2
Q ss_pred ccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEe
Q 042284 324 RRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFP 403 (430)
Q Consensus 324 t~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~ 403 (430)
+.++|+++++ +..+.++++|+|+||++|+.|.|.++++++++++ +.|+.||.+ |+|.++||+++|+
T Consensus 5 ~~ee~~~~i~--~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d----------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 5 KKEEKDKLIE--SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA----------DANNEYGVFEFYQ 70 (204)
T ss_pred CHHHHHHHHh--cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc----------cCcccceEEEEEE
Confidence 4467777764 2247899999999999999999999999999976 999999865 6899999999999
Q ss_pred CCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 404 KHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 404 ~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+|+. .-++.| .++.+|.++++++
T Consensus 71 ~g~~-i~r~~G--~~~~~~~~~~~~~ 93 (204)
T PTZ00062 71 NSQL-INSLEG--CNTSTLVSFIRGW 93 (204)
T ss_pred CCEE-EeeeeC--CCHHHHHHHHHHH
Confidence 9984 344444 5788888888764
No 94
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=9.5e-12 Score=124.98 Aligned_cols=102 Identities=30% Similarity=0.699 Sum_probs=87.7
Q ss_pred ceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEE
Q 042284 320 LVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399 (430)
Q Consensus 320 v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl 399 (430)
+..++..+|.... ...+++++|+||+|||++|+.+.|.|.+++..+.+ .+.++.|||+++ .++| ++|+|+++||+
T Consensus 31 ~~~~~~~~~~~~~--~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~-~~~~-~~y~i~gfPtl 105 (383)
T KOG0191|consen 31 VSELTLDSFFDFL--LKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEH-KDLC-EKYGIQGFPTL 105 (383)
T ss_pred hhhhhccccHHHh--hccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhh-HHHH-HhcCCccCcEE
Confidence 3333444555543 34789999999999999999999999999999998 899999999999 9999 99999999999
Q ss_pred EEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 400 LFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 400 ~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
.+|.+| ...+.+.+ ..+.+.+.+|+..
T Consensus 106 ~~f~~~-~~~~~~~~-~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 106 KVFRPG-KKPIDYSG-PRNAESLAEFLIK 132 (383)
T ss_pred EEEcCC-CceeeccC-cccHHHHHHHHHH
Confidence 999999 44888888 7899999998764
No 95
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.28 E-value=2.1e-11 Score=109.75 Aligned_cols=152 Identities=18% Similarity=0.252 Sum_probs=91.3
Q ss_pred cEEEEechhHHHHHH-HHHHhc----CCCcEEEEecCCCCC--HHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLT----GRPFRVFSLDTGRLN--PETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGL 147 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~----~~~i~vi~~DTg~~f--pet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 147 (430)
+|+|++||||||++| +++... +..+.++++|.|... .+-.++++++++.+|+++.+...+.. .
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~-------~--- 70 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDED-------R--- 70 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CH-------C---
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeee-------e---
Confidence 489999999999776 665554 346889999999763 35678999999999999987755430 0
Q ss_pred CCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecC--CCCcc--cCCCCCeEEEeccccc
Q 042284 148 FSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDT--SFEGI--DGGKGSLVKWNPLANV 221 (430)
Q Consensus 148 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~--~~~~~--~~~~~~~~~~~Pi~dW 221 (430)
........||......-|.+... +++.+++|+.+||-. .-..+..+.... .+.+. .....++..++||+..
T Consensus 71 --~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~-ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~~ 147 (182)
T PF01171_consen 71 --KKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQA-ETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLYV 147 (182)
T ss_dssp --CTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHH-HHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGCS
T ss_pred --cccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccH-HHHHHHHHHhccchhhccccccccccCcccCCcchhC
Confidence 01234456677666667777766 457999999998843 221111111000 00000 0001247789999999
Q ss_pred chHHHHHHHHHcCCCCcc
Q 042284 222 KGQDIWNFLRAMNIPINS 239 (430)
Q Consensus 222 t~~dVw~yi~~~~lp~~p 239 (430)
+++|+..|.+.++|||..
T Consensus 148 ~k~ei~~~~~~~~i~~~~ 165 (182)
T PF01171_consen 148 SKDEIRAYAKENGIPYVE 165 (182)
T ss_dssp -HHHHHHHHHHTT-SSBS
T ss_pred CHHHHHHHHHHCCCcEEE
Confidence 999999999999999854
No 96
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.26 E-value=3.2e-11 Score=126.55 Aligned_cols=103 Identities=17% Similarity=0.367 Sum_probs=81.6
Q ss_pred ccchHHHHHHh-cCCCCcEEEEEeCCCCHhHHHHHHHH---HHHHHHHcCCCeEEEEEEcCCC---chHHHHHhCCCCCC
Q 042284 324 RRTGIENLARL-QNREDPWLIVLYAPWCHFCQAMEGSY---IELAEQLEGMGVKVGKFRADGD---HKEFAKQKLQLVSF 396 (430)
Q Consensus 324 t~~~f~~~i~~-~~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Vd~~~~---~~~l~~~~~~V~~~ 396 (430)
+.+++++.++. ..++|+|+|+|||+||++|+.+++.. +++.+.+++ +.++++|++++ +.+++ ++|+|.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~--~~~v~vDvt~~~~~~~~l~-~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD--TVLLQADVTANNAEDVALL-KHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC--CEEEEEECCCCChhhHHHH-HHcCCCCC
Confidence 34677776653 24579999999999999999999975 678888864 89999999865 25788 89999999
Q ss_pred CEEEEEe-CCCcc-eeecCCCCCCHHHHHHHHHHhC
Q 042284 397 PTILFFP-KHSAK-PVKYPSEKRDVDSLMAFVNALR 430 (430)
Q Consensus 397 Ptl~~~~-~g~~~-~~~~~gg~~~~~~l~~~i~~~~ 430 (430)
||+++|+ +|+.. ..++.| ..+.+++.+++++++
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G-~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTG-FMDAAAFAAHLRQLQ 570 (571)
T ss_pred CEEEEECCCCCCcccccccC-CCCHHHHHHHHHHhc
Confidence 9999997 55532 234555 789999999999863
No 97
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.26 E-value=2.8e-11 Score=101.23 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=62.1
Q ss_pred ccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHH-H--HHHHHHHcCCCeEEEEEEcCCCchHHHHH--------hCC
Q 042284 324 RRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGS-Y--IELAEQLEGMGVKVGKFRADGDHKEFAKQ--------KLQ 392 (430)
Q Consensus 324 t~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~Vd~~~~~~~l~~~--------~~~ 392 (430)
+++.++...+ ++|+|+|+|+|+||++|+.|.+. | .++++.+.. ++.+++||.++. ++++ + .|+
T Consensus 4 ~~eal~~Ak~---~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~-~~~~-~~~~~~~~~~~~ 77 (124)
T cd02955 4 GEEAFEKARR---EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREER-PDVD-KIYMNAAQAMTG 77 (124)
T ss_pred CHHHHHHHHH---cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcC-cHHH-HHHHHHHHHhcC
Confidence 3455666554 89999999999999999999874 3 477777655 699999999987 7776 4 368
Q ss_pred CCCCCEEEEEeCCCc
Q 042284 393 LVSFPTILFFPKHSA 407 (430)
Q Consensus 393 V~~~Ptl~~~~~g~~ 407 (430)
+.++||++++++.++
T Consensus 78 ~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 78 QGGWPLNVFLTPDLK 92 (124)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999976554
No 98
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.26 E-value=4e-11 Score=109.71 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=98.1
Q ss_pred EEEEechhHHHHHH-HHHHhcC-CCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCCCcc
Q 042284 76 IAIAFSGAEDVVLI-EYAKLTG-RPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYED 153 (430)
Q Consensus 76 i~vs~SGGKDS~vl-~l~~~~~-~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~ 153 (430)
|+|++|||+||+++ +++.+.. .++.++|+|+|...++..++++++++++|++++++...... ........ .
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~~~~~------~ 73 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEFAKNP------P 73 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHHhcCC------C
Confidence 57999999999876 6776654 37889999999878889999999999999999877554211 11111111 1
Q ss_pred chhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEeccc--ccchHHHHHH
Q 042284 154 GHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLA--NVKGQDIWNF 229 (430)
Q Consensus 154 ~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~--dWt~~dVw~y 229 (430)
.....|.......+.+..+ +.+++++|...+|....|..+... ....-+.||+ .+++.||..|
T Consensus 74 ~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~~~~~~-------------~~~~iirPL~~~~~~K~ei~~~ 140 (202)
T cd01990 74 DRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRPGLKAL-------------RELGVRSPLAEAGLGKAEIREL 140 (202)
T ss_pred CccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccChHHHHH-------------HHcCCcCchhhcCCCHHHHHHH
Confidence 1122355555555555555 567999999998864222221111 0123589999 5999999999
Q ss_pred HHHcCCCC
Q 042284 230 LRAMNIPI 237 (430)
Q Consensus 230 i~~~~lp~ 237 (430)
.++.|||+
T Consensus 141 a~~~gl~~ 148 (202)
T cd01990 141 ARELGLPT 148 (202)
T ss_pred HHHcCCCC
Confidence 99999988
No 99
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=2.9e-11 Score=117.40 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=108.8
Q ss_pred HHHHHHHHc---CCcEEEEechhHHHHHH-HHHHhcC--CCcEEEEecCCCCC--HHHHHHHHHHHHHhCCcEEEEccCc
Q 042284 64 IMDKAFQKF---GNDIAIAFSGAEDVVLI-EYAKLTG--RPFRVFSLDTGRLN--PETHQFFDTVEKHYGIRIEYTFPNA 135 (430)
Q Consensus 64 ~i~~~~~~~---~~~i~vs~SGGKDS~vl-~l~~~~~--~~i~vi~~DTg~~f--pet~~~~~~~~~~~gl~i~~~~p~~ 135 (430)
.+.+.+..+ +.+++|++||||||++| +++.+.. .++.++++|.|..- ..-.++++++++.+|+++++..-..
T Consensus 9 ~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 88 (298)
T COG0037 9 KVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTD 88 (298)
T ss_pred HHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEEEEe
Confidence 344444444 36799999999999877 7777766 47889999999864 5778899999999999776553322
Q ss_pred hHHHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecCC-----CCcccCC
Q 042284 136 VEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTS-----FEGIDGG 208 (430)
Q Consensus 136 ~~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~-----~~~~~~~ 208 (430)
...... . +..+...-|...+..-+.+... +++.++||+.+||-. .-..++.+..+.. ..... .
T Consensus 89 ~~~~~~-----~---~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~-et~lm~l~~g~~~~~l~~~~~~~-~ 158 (298)
T COG0037 89 DLGRET-----L---DGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA-ETFLMNLLRGSGLRGLRGMPPKR-P 158 (298)
T ss_pred eccccc-----c---CCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH-HHHHHHHHcCcHhhHHhhCCccc-c
Confidence 110000 0 0112333477777788888777 568999999999964 2222222211100 00000 1
Q ss_pred CCCe-EEEecccccchHHHHHHHHHcCCCC
Q 042284 209 KGSL-VKWNPLANVKGQDIWNFLRAMNIPI 237 (430)
Q Consensus 209 ~~~~-~~~~Pi~dWt~~dVw~yi~~~~lp~ 237 (430)
..+. ..++|++.+++.||..|...++|||
T Consensus 159 ~~~~~~~iRPL~~~~~~ei~~~~~~~~l~~ 188 (298)
T COG0037 159 FEGGLLIIRPLLYVREKEIELYAKEKGLPY 188 (298)
T ss_pred cCCCCeeeeecccCCHHHHHHHHHHcCCCE
Confidence 1222 6899999999999999999999976
No 100
>PHA02125 thioredoxin-like protein
Probab=99.24 E-value=5.3e-11 Score=90.84 Aligned_cols=72 Identities=19% Similarity=0.375 Sum_probs=56.6
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHH
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDS 421 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~ 421 (430)
+++|||+||++|+.+.|.|+++. +.++.||.+++ ++++ ++|+|.++||++ +|+. ...+.|...+..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~-~~l~-~~~~v~~~PT~~---~g~~-~~~~~G~~~~~~~ 68 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEG-VELT-AKHHIRSLPTLV---NTST-LDRFTGVPRNVAE 68 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCC-HHHH-HHcCCceeCeEE---CCEE-EEEEeCCCCcHHH
Confidence 78999999999999999997652 46889999998 9999 999999999987 4542 3345553455666
Q ss_pred HHHHH
Q 042284 422 LMAFV 426 (430)
Q Consensus 422 l~~~i 426 (430)
|++-|
T Consensus 69 l~~~~ 73 (75)
T PHA02125 69 LKEKL 73 (75)
T ss_pred HHHHh
Confidence 66544
No 101
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.23 E-value=4.6e-11 Score=91.38 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=58.8
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHH
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDS 421 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~ 421 (430)
.|.||++||++|+.+.|.++++++++.. .+.|+.|| + .+.+ .+|+|.++||+++ +|+. . +.|...+.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~---~-~~~a-~~~~v~~vPti~i--~G~~--~-~~G~~~~~~~ 70 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT---D-MNEI-LEAGVTATPGVAV--DGEL--V-IMGKIPSKEE 70 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC---C-HHHH-HHcCCCcCCEEEE--CCEE--E-EEeccCCHHH
Confidence 3789999999999999999999999976 68887777 2 4557 7899999999999 7763 3 4442245578
Q ss_pred HHHHH
Q 042284 422 LMAFV 426 (430)
Q Consensus 422 l~~~i 426 (430)
|.+++
T Consensus 71 l~~~l 75 (76)
T TIGR00412 71 IKEIL 75 (76)
T ss_pred HHHHh
Confidence 88776
No 102
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=1.2e-11 Score=123.76 Aligned_cols=112 Identities=15% Similarity=0.376 Sum_probs=86.1
Q ss_pred CCCCCC-CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC--CCeEEEEEEcCCC-chHHH
Q 042284 312 SDLFNS-QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG--MGVKVGKFRADGD-HKEFA 387 (430)
Q Consensus 312 ~~~~~~-~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~--~~v~~~~Vd~~~~-~~~l~ 387 (430)
+.++.. .+|++|+.++|+..+. .+.+..+|.||++|||+|+++.|.|+++|+.+.. .-+.++.|||-+. |..+|
T Consensus 32 ptLy~~~D~ii~Ld~~tf~~~v~--~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC 109 (606)
T KOG1731|consen 32 PTLYSPDDPIIELDVDTFNAAVF--GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC 109 (606)
T ss_pred CcccCCCCCeEEeehhhhHHHhc--ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence 344433 7899999999999875 4557899999999999999999999999999875 3678999999543 48999
Q ss_pred HHhCCCCCCCEEEEEeCCCcc---eeecCCCCCCHHHHHHHHH
Q 042284 388 KQKLQLVSFPTILFFPKHSAK---PVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 388 ~~~~~V~~~Ptl~~~~~g~~~---~~~~~gg~~~~~~l~~~i~ 427 (430)
++|+|.++|++.+|+.+.+. ...+.| .....++.+.+.
T Consensus 110 -Ref~V~~~Ptlryf~~~~~~~~~G~~~~~-~~~~~ei~~~l~ 150 (606)
T KOG1731|consen 110 -REFSVSGYPTLRYFPPDSQNKTDGSDVSG-PVIPSEIRDQLI 150 (606)
T ss_pred -hhcCCCCCceeeecCCccccCcCCCcccC-CcchhhHHHHHH
Confidence 99999999999999876431 122222 344555555543
No 103
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.22 E-value=6.5e-11 Score=109.39 Aligned_cols=95 Identities=15% Similarity=0.281 Sum_probs=75.6
Q ss_pred EcccchHHHHHHhcCCCCc-EEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEE
Q 042284 322 SFRRTGIENLARLQNREDP-WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400 (430)
Q Consensus 322 ~lt~~~f~~~i~~~~~~k~-vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~ 400 (430)
.|+.++.+.+.. .+++ +++.||++||++|+.+.|.+++++..+. ++.+..||.+++ ++++ ++|+|.++||++
T Consensus 119 ~L~~~~~~~l~~---~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~-~~~~-~~~~V~~vPtl~ 191 (215)
T TIGR02187 119 GLSEKTVELLQS---LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANEN-PDLA-EKYGVMSVPKIV 191 (215)
T ss_pred CCCHHHHHHHHh---cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCC-HHHH-HHhCCccCCEEE
Confidence 445455555443 3444 4555999999999999999999998854 599999999999 9999 999999999999
Q ss_pred EEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 401 FFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 401 ~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
++++|. . +.| ..+.++|.++|++
T Consensus 192 i~~~~~--~--~~G-~~~~~~l~~~l~~ 214 (215)
T TIGR02187 192 INKGVE--E--FVG-AYPEEQFLEYILS 214 (215)
T ss_pred EecCCE--E--EEC-CCCHHHHHHHHHh
Confidence 997765 2 555 5788999999875
No 104
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.22 E-value=1.9e-10 Score=102.38 Aligned_cols=107 Identities=14% Similarity=0.261 Sum_probs=82.4
Q ss_pred CceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC----------------
Q 042284 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---------------- 382 (430)
Q Consensus 319 ~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---------------- 382 (430)
.+..++.+.+..-.- .+++++|+||++||++|+...+.+.++++++++.++.++.|+++..
T Consensus 45 ~~~~~~g~~~~l~~~---~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~ 121 (173)
T PRK03147 45 VLTDLEGKKIELKDL---KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFP 121 (173)
T ss_pred EeecCCCCEEeHHHc---CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCce
Confidence 344455544432111 4689999999999999999999999999999875688898987532
Q ss_pred -----chHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHhC
Q 042284 383 -----HKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNALR 430 (430)
Q Consensus 383 -----~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~~ 430 (430)
+..++ +.|+|..+|++++++++++....+.| ..+.+++.+++++++
T Consensus 122 ~~~d~~~~~~-~~~~v~~~P~~~lid~~g~i~~~~~g-~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 122 VAIDKGRQVI-DAYGVGPLPTTFLIDKDGKVVKVITG-EMTEEQLEEYLEKIK 172 (173)
T ss_pred EEECCcchHH-HHcCCCCcCeEEEECCCCcEEEEEeC-CCCHHHHHHHHHHhc
Confidence 15778 89999999999999766554445555 689999999999875
No 105
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.20 E-value=1.1e-10 Score=119.46 Aligned_cols=89 Identities=18% Similarity=0.331 Sum_probs=71.1
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEE----------------------------cCCCchHHHH
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFR----------------------------ADGDHKEFAK 388 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd----------------------------~~~~~~~l~~ 388 (430)
.+++|||+|||+||++|+.++|.+++++++++.+++.|+.|. +|.+ ..++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~-~~la- 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG-GTLA- 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc-HHHH-
Confidence 689999999999999999999999999999875456666553 3334 6788
Q ss_pred HhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 389 QKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 389 ~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
+.|+|.++||++++.+.+++...+.| ..+.++|.++|+.
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G-~~~~eeL~a~Ie~ 171 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKG-SISEAQALALIRN 171 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeC-CCCHHHHHHHHHH
Confidence 89999999999877544333445555 7899999999984
No 106
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.17 E-value=1.7e-10 Score=109.92 Aligned_cols=88 Identities=14% Similarity=0.228 Sum_probs=69.9
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC----------chHHHHHhCCCCCCCEEEEEeC-C
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD----------HKEFAKQKLQLVSFPTILFFPK-H 405 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~----------~~~l~~~~~~V~~~Ptl~~~~~-g 405 (430)
.++++||+||++||++|+.+.|.+++++++++ +.++.|++|.. +..++ ++|+|.++||++++++ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVFLADPDP 240 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEEEEECCC
Confidence 47899999999999999999999999999984 56666666542 15688 8999999999999987 5
Q ss_pred CcceeecCCCCCCHHHHHHHHHHh
Q 042284 406 SAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 406 ~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+. ......|..+.++|.+.|..+
T Consensus 241 ~~-v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 241 NQ-FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred CE-EEEEEeCCCCHHHHHHHHHHH
Confidence 53 333222378999999888654
No 107
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.16 E-value=4.2e-10 Score=108.08 Aligned_cols=167 Identities=11% Similarity=0.138 Sum_probs=103.6
Q ss_pred cEEEEechhHHHHHH-HHHHh-cCCCcEEEEecCCCCCHHHHHHHHHHHHHhCC-cEEEEccCchHHHHHHHhcCCCCCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKL-TGRPFRVFSLDTGRLNPETHQFFDTVEKHYGI-RIEYTFPNAVEVQALVRTKGLFSFY 151 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~-~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl-~i~~~~p~~~~~~~~~~~~g~~~~~ 151 (430)
+++|++|||+||++| +++.+ .+.++.++|+|+|....+-.+.++++++++|. +++++..... +.. ...+... +
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~-fl~--~l~~v~n-p 76 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASER-FLS--ALKGVTD-P 76 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHH-HHH--HhcCCCC-H
Confidence 488999999999777 67766 47779999999998766667889999988886 8877744321 111 1122110 0
Q ss_pred ccchhhhhhhhchHHHHHHHh--c-CceEEEeeeccCCcccccCC---CeeeecCCCCcccCCCCCeEEEecccccchHH
Q 042284 152 EDGHQECCRIRKVRPLKRALK--G-LRAWITGQRKDQSPGTRAEI---PVVQIDTSFEGIDGGKGSLVKWNPLANVKGQD 225 (430)
Q Consensus 152 ~~~~~~cc~~~K~~pl~~~~~--~-~~~~i~G~R~~Es~~~R~~~---~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~d 225 (430)
...+.-|......-+.+..+ + ++.+++|+..+|-...|... ..+.......+.. .....-.+.||.+++++|
T Consensus 77 -e~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~-a~~~~~vi~PL~~l~K~E 154 (295)
T cd01997 77 -EEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLP-EDMKLKLIEPLRDLFKDE 154 (295)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccccccccccccccccc-hHhhCCcccccccCcHHH
Confidence 11222233344445555444 5 77899999998743223210 0011000000000 001233589999999999
Q ss_pred HHHHHHHcCCCCccccccCCcc
Q 042284 226 IWNFLRAMNIPINSLHSQGYIS 247 (430)
Q Consensus 226 Vw~yi~~~~lp~~pLY~~Gy~s 247 (430)
|..|.++.|||..-++++-|+.
T Consensus 155 VR~lar~lGLp~~~~~~~Pfp~ 176 (295)
T cd01997 155 VRELGRELGLPEEIVERHPFPG 176 (295)
T ss_pred HHHHHHHcCCCchhhCCCCCCC
Confidence 9999999999987777775544
No 108
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.16 E-value=2.9e-10 Score=98.77 Aligned_cols=89 Identities=18% Similarity=0.332 Sum_probs=65.7
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC-----------chHHHHHhC---CCCCCCEEEEE
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD-----------HKEFAKQKL---QLVSFPTILFF 402 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~-----------~~~l~~~~~---~V~~~Ptl~~~ 402 (430)
..+..+|+|||+||++|+++.|.+++++++++ +.++.|+.+.. +.......| +|.++||++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 45667999999999999999999999999884 55666666542 023331345 78999999999
Q ss_pred eCCCccee-ecCCCCCCHHHHHHHHHHh
Q 042284 403 PKHSAKPV-KYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 403 ~~g~~~~~-~~~gg~~~~~~l~~~i~~~ 429 (430)
+..+.+.. ...| ..+.++|.+.|+++
T Consensus 126 D~~G~~i~~~~~G-~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQG-AVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeec-ccCHHHHHHHHHHh
Confidence 76543223 3455 78999999988875
No 109
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.15 E-value=7.1e-11 Score=97.26 Aligned_cols=87 Identities=24% Similarity=0.482 Sum_probs=62.6
Q ss_pred CCCCcEEEEEeCCCCHhHHHHHHHHHHH---HHHHcCCCeEEEEEEcCCCc-------------------hHHHHHhCCC
Q 042284 336 NREDPWLIVLYAPWCHFCQAMEGSYIEL---AEQLEGMGVKVGKFRADGDH-------------------KEFAKQKLQL 393 (430)
Q Consensus 336 ~~~k~vlV~Fya~wC~~C~~~~p~~~~l---a~~~~~~~v~~~~Vd~~~~~-------------------~~l~~~~~~V 393 (430)
.++++++|+|++|||++|+.+.+.+... ...+.+ ++.++.++++... .++. +.|+|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELA-QRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHH-HHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHH-HHcCC
Confidence 4789999999999999999999998754 334443 6888888887541 3578 89999
Q ss_pred CCCCEEEEEe-CCCcceeecCCCCCCHHHHHHHH
Q 042284 394 VSFPTILFFP-KHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 394 ~~~Ptl~~~~-~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
.++||+++++ +|+. ...+.| ..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~-v~~~~G-~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKI-VYRIPG-YLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCE-EEEEES-S--HHHHHHHH
T ss_pred CccCEEEEEcCCCCE-EEEecC-CCCHHHHHhhC
Confidence 9999999997 5553 445555 78999998875
No 110
>PRK00919 GMP synthase subunit B; Validated
Probab=99.14 E-value=1.2e-09 Score=105.21 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=105.3
Q ss_pred HHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhc-CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHH
Q 042284 63 EIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLT-GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQA 140 (430)
Q Consensus 63 ~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~-~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~ 140 (430)
+.|+..+.. ++++|+||||.||+++ .++.+. +.++.++|+|+|.....-.+.++++++++ +++.++.-... +..
T Consensus 13 ~~l~~~~~~--~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~-fl~ 88 (307)
T PRK00919 13 EEIREEIGD--GKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDR-FLD 88 (307)
T ss_pred HHHHHHhCC--CCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHH-HHH
Confidence 344444332 5699999999999877 666664 77899999999998777788888888887 77776643321 211
Q ss_pred HHHhcCCCCCCccchhhh--hhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEe
Q 042284 141 LVRTKGLFSFYEDGHQEC--CRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWN 216 (430)
Q Consensus 141 ~~~~~g~~~~~~~~~~~c--c~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~ 216 (430)
.+ .+. ......| |......-+.+... +++.+++|+..+|....|..+... ....+.. .....-.+.
T Consensus 89 ~L--~~v----~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r~~iks~---~nv~gl~-~~~~~~Ii~ 158 (307)
T PRK00919 89 AL--KGV----TDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESEGGIKSH---HNVGGLP-EGMVLKIVE 158 (307)
T ss_pred hc--cCC----CChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhccCccccc---ccccccC-hhhcCCccc
Confidence 11 121 1111222 22223334444333 667899999988864344332111 0110000 001234689
Q ss_pred cccccchHHHHHHHHHcCCCCccccccCCc
Q 042284 217 PLANVKGQDIWNFLRAMNIPINSLHSQGYI 246 (430)
Q Consensus 217 Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~ 246 (430)
||.+++++||..|.++.|||+.-++..-++
T Consensus 159 PL~~l~K~EVr~la~~lGLp~~~~~r~p~~ 188 (307)
T PRK00919 159 PLRDLYKDEVREVARALGLPEEISERMPFP 188 (307)
T ss_pred CchhCcHHHHHHHHHHcCCChhhhCCCCCC
Confidence 999999999999999999998766655443
No 111
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.14 E-value=6.4e-10 Score=99.57 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=87.0
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHH-----HHHHHHHHHHHhCCcE--EEEccCchHHHHHHHhcC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPE-----THQFFDTVEKHYGIRI--EYTFPNAVEVQALVRTKG 146 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpe-----t~~~~~~~~~~~gl~i--~~~~p~~~~~~~~~~~~g 146 (430)
+++|+||||+||+++ +++.+.+.++..+|+|.|....+ ..+..+.+ ..++.++ .++..... +.......+
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g~~v~av~~d~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~-~~~~~~~~~ 78 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFTSEKAREKVEDLARKL-ARYSPGHKLVVIIFTFF-VQKEIYGYG 78 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcCCeEEEEEEeCCCCCchHHHHHHHHHHHHH-HHhCCCCceEEEeCcHH-HHHHHHHhC
Confidence 478999999999877 77778888889999999986443 33333333 5676544 44443321 111111122
Q ss_pred CCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccccchH
Q 042284 147 LFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQ 224 (430)
Q Consensus 147 ~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~ 224 (430)
.+ .++..-|......-+..... +++.+++|...+|-. .-.......... ..+...+.|++++++.
T Consensus 79 ~~----~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~-~~~~~~l~~~~~--------~~~~~i~rPl~~~~K~ 145 (177)
T cd01712 79 KE----KYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVA-SQTLENLLVISS--------GTDLPILRPLIGFDKE 145 (177)
T ss_pred CC----ccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccch-HHHHHhhhhccc--------CCCCeEECCCCCCCHH
Confidence 11 01111133222223333232 667999999988753 211111111111 1246788999999999
Q ss_pred HHHHHHHHcCCCC
Q 042284 225 DIWNFLRAMNIPI 237 (430)
Q Consensus 225 dVw~yi~~~~lp~ 237 (430)
||+.|.+++|||.
T Consensus 146 eI~~~a~~~gl~~ 158 (177)
T cd01712 146 EIIGIARRIGTYD 158 (177)
T ss_pred HHHHHHHHcCCcc
Confidence 9999999999854
No 112
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.14 E-value=6.1e-10 Score=115.38 Aligned_cols=167 Identities=15% Similarity=0.213 Sum_probs=104.9
Q ss_pred CcEEEEechhHHHHHH-HHHHhc-CCCcEEEEecCCCC-CHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCC
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLT-GRPFRVFSLDTGRL-NPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSF 150 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~-~~~i~vi~~DTg~~-fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~ 150 (430)
++++|++|||+||+++ +++.+. +.++.++|+|+|.. -+|..++++.+++++|++++++..+.. +.. ...|. .-
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~-f~~--~l~g~-~~ 291 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDR-FLS--ALAGV-TD 291 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHH-HHH--hccCC-CC
Confidence 5799999999999877 666665 77799999999974 457777777888999999987744321 111 11232 11
Q ss_pred CccchhhhhhhhchHHHHHHHh---cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCC---CCeEEEecccccchH
Q 042284 151 YEDGHQECCRIRKVRPLKRALK---GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGK---GSLVKWNPLANVKGQ 224 (430)
Q Consensus 151 ~~~~~~~cc~~~K~~pl~~~~~---~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~---~~~~~~~Pi~dWt~~ 224 (430)
+...+..||..+ ..-+.+..+ +++.+++|+..+|-...|...+.-... ++.+ ..+. ...-.+.||.+++++
T Consensus 292 ~~~~r~~~~~~~-~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~~~~~ik-~~~~-l~Gl~~~~~~~ii~PL~~l~K~ 368 (511)
T PRK00074 292 PEEKRKIIGREF-IEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTKKAATIK-SHHN-VGGLPEDMKLKLVEPLRELFKD 368 (511)
T ss_pred cHHhhhhhhHHH-HHHHHHHHHHccCCCEEEECCCcchhhhhcCCCCccccc-cccC-ccCcChhHhcccccchhhcCHH
Confidence 111222343333 244444443 556899999888864233110100000 0000 0011 123478999999999
Q ss_pred HHHHHHHHcCCCCccccccCCcc
Q 042284 225 DIWNFLRAMNIPINSLHSQGYIS 247 (430)
Q Consensus 225 dVw~yi~~~~lp~~pLY~~Gy~s 247 (430)
||..|.+++|||+.-.+++-|+.
T Consensus 369 EIr~~a~~~gLp~~~~~~~p~p~ 391 (511)
T PRK00074 369 EVRKLGLELGLPEEIVYRHPFPG 391 (511)
T ss_pred HHHHHHHHcCCCHHHhCCCCCCC
Confidence 99999999999988888875443
No 113
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.12 E-value=1.5e-09 Score=105.30 Aligned_cols=175 Identities=17% Similarity=0.237 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhc-CCCcEEEEecCCCCCH-HHHHHHHHHHHHhCCcEEEEccCchHHH
Q 042284 63 EIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLT-GRPFRVFSLDTGRLNP-ETHQFFDTVEKHYGIRIEYTFPNAVEVQ 139 (430)
Q Consensus 63 ~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~-~~~i~vi~~DTg~~fp-et~~~~~~~~~~~gl~i~~~~p~~~~~~ 139 (430)
+.|+..+.. ++++|++|||+||+++ +++.+. +.++.++|+|+|..-. |..+..+.+++++|++++++.-... +.
T Consensus 8 ~~l~~~v~~--~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~-fl 84 (311)
T TIGR00884 8 EEIREQVGD--AKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKER-FL 84 (311)
T ss_pred HHHHHHhCC--CcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHH-HH
Confidence 344444432 5699999999999877 666664 6789999999998654 5545555566789999987754422 11
Q ss_pred HHHHhcCCCCCCccchhhhhhhhchHHHHHHHh--c-CceEEEeeeccCCcccccCC-CeeeecCCCCcccCCCCCeEEE
Q 042284 140 ALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK--G-LRAWITGQRKDQSPGTRAEI-PVVQIDTSFEGIDGGKGSLVKW 215 (430)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~-~~~~i~G~R~~Es~~~R~~~-~~~~~d~~~~~~~~~~~~~~~~ 215 (430)
... .+... +. ..+.-|......-+....+ + ++.+++|+..+|-...|... ..+.......+.. .....-.+
T Consensus 85 ~~l--~~v~~-p~-~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~-~~~~~~ii 159 (311)
T TIGR00884 85 SAL--KGVTD-PE-EKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLP-EDMKLKLV 159 (311)
T ss_pred hhh--cCCCC-hH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhccChhHhhhccCccccCC-hhhcCceE
Confidence 111 12110 11 1112233333444554443 4 66899999987743233210 0010000000000 00123378
Q ss_pred ecccccchHHHHHHHHHcCCCCccccccCC
Q 042284 216 NPLANVKGQDIWNFLRAMNIPINSLHSQGY 245 (430)
Q Consensus 216 ~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy 245 (430)
.||.+.+++||..|.+..|||++-.+++-|
T Consensus 160 ~PL~~l~K~EVr~la~~lgLp~~~~~~~Pf 189 (311)
T TIGR00884 160 EPLRELFKDEVRKLGKELGLPEEIVWRHPF 189 (311)
T ss_pred EEcccCcHHHHHHHHHHcCCCHHHhhCCCC
Confidence 999999999999999999999877777744
No 114
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.11 E-value=3.2e-09 Score=94.27 Aligned_cols=140 Identities=16% Similarity=0.254 Sum_probs=90.2
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCCCcc
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYED 153 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~ 153 (430)
+++|++|||+||+++ +++.+.+.++.++++|.|....+-.++++++++.+| +...+....
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~------------------ 61 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPARN------------------ 61 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcCCcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCcC------------------
Confidence 478999999999776 777777778899999998765445589999999999 322221100
Q ss_pred chhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCC-C-eeee-cCCCCcccCCCCCeEEEecccccchHHHHH
Q 042284 154 GHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEI-P-VVQI-DTSFEGIDGGKGSLVKWNPLANVKGQDIWN 228 (430)
Q Consensus 154 ~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~-~-~~~~-d~~~~~~~~~~~~~~~~~Pi~dWt~~dVw~ 228 (430)
.....-+.+... +++.+++|...+|.. ..... + .++. +.... .....++.-++||++|++.||..
T Consensus 62 -------~~~~~~l~~~a~~~g~~~i~~G~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~PL~~~~K~ei~~ 131 (169)
T cd01995 62 -------LIFLSIAAAYAEALGAEAIIIGVNAEDYS-GYPDCRPEFIEAMNKALN--LGTENGIKIHAPLIDLSKAEIVR 131 (169)
T ss_pred -------HHHHHHHHHHHHHCCCCEEEEeeccCccC-CCCCCCHHHHHHHHHHHH--hhcCCCeEEEeCcccCCHHHHHH
Confidence 011122222222 678899999998852 21110 0 0000 00000 00112455689999999999999
Q ss_pred HHHHcCCCCcccccc
Q 042284 229 FLRAMNIPINSLHSQ 243 (430)
Q Consensus 229 yi~~~~lp~~pLY~~ 243 (430)
++++.|+|+..-|..
T Consensus 132 ~~~~~g~~~~~s~sC 146 (169)
T cd01995 132 LGGELGVPLELTWSC 146 (169)
T ss_pred HHhHcCCChhheeec
Confidence 999999999887754
No 115
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.11 E-value=4.6e-10 Score=96.46 Aligned_cols=76 Identities=12% Similarity=0.189 Sum_probs=59.9
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC-------CCeEEEEEEcCCCc------------------------hH
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG-------MGVKVGKFRADGDH------------------------KE 385 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-------~~v~~~~Vd~~~~~------------------------~~ 385 (430)
++++++|+|||+||++|+.++|.++++++++++ +++.++.|+.+++. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 579999999999999999999999998887653 25899999877541 14
Q ss_pred HHHHhCCCCCCCEEEEEeCCCcceeecCC
Q 042284 386 FAKQKLQLVSFPTILFFPKHSAKPVKYPS 414 (430)
Q Consensus 386 l~~~~~~V~~~Ptl~~~~~g~~~~~~~~g 414 (430)
++ ++|+|.++||+++++..++ .+...+
T Consensus 104 l~-~~y~v~~iPt~vlId~~G~-Vv~~~~ 130 (146)
T cd03008 104 LE-AQFSVEELPTVVVLKPDGD-VLAANA 130 (146)
T ss_pred HH-HHcCCCCCCEEEEECCCCc-EEeeCh
Confidence 56 7899999999999975443 444443
No 116
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.09 E-value=8.8e-10 Score=87.91 Aligned_cols=68 Identities=22% Similarity=0.412 Sum_probs=56.3
Q ss_pred CCcEEEEEeCCCCHhHHHHHHHHHHHHHHHc-CCCeEEEEEEcCCCc------------------------hHHHHHhCC
Q 042284 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLE-GMGVKVGKFRADGDH------------------------KEFAKQKLQ 392 (430)
Q Consensus 338 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~-~~~v~~~~Vd~~~~~------------------------~~l~~~~~~ 392 (430)
+|+++|+|||+||++|+...|.+.++.+.++ ++++.|+.|+.++.. ..+. +.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL-KKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH-HHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH-HHCC
Confidence 5899999999999999999999999999999 347999999887641 3466 7899
Q ss_pred CCCCCEEEEEeCCC
Q 042284 393 LVSFPTILFFPKHS 406 (430)
Q Consensus 393 V~~~Ptl~~~~~g~ 406 (430)
|.++|+++++++.+
T Consensus 80 i~~iP~~~lld~~G 93 (95)
T PF13905_consen 80 INGIPTLVLLDPDG 93 (95)
T ss_dssp -TSSSEEEEEETTS
T ss_pred CCcCCEEEEECCCC
Confidence 99999999998765
No 117
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.08 E-value=8e-10 Score=93.74 Aligned_cols=69 Identities=17% Similarity=0.392 Sum_probs=56.8
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCC--CeEEEEEEcCCCc-----------------------hHHHHHhC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM--GVKVGKFRADGDH-----------------------KEFAKQKL 391 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~--~v~~~~Vd~~~~~-----------------------~~l~~~~~ 391 (430)
.++++||+||++||++|+.+.|.+.++++++++. ++.++.|+.+... ..++ +.|
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN-RTF 95 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH-HHc
Confidence 5789999999999999999999999999888652 5777777776441 3467 789
Q ss_pred CCCCCCEEEEEeCCC
Q 042284 392 QLVSFPTILFFPKHS 406 (430)
Q Consensus 392 ~V~~~Ptl~~~~~g~ 406 (430)
+|.++|++++++.++
T Consensus 96 ~v~~~P~~~lid~~G 110 (131)
T cd03009 96 KIEGIPTLIILDADG 110 (131)
T ss_pred CCCCCCEEEEECCCC
Confidence 999999999997444
No 118
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.08 E-value=3e-09 Score=105.02 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=102.6
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCC----------CHHHHHHHHHHHHHhCCcEEEEccCchHH----H
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRL----------NPETHQFFDTVEKHYGIRIEYTFPNAVEV----Q 139 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~----------fpet~~~~~~~~~~~gl~i~~~~p~~~~~----~ 139 (430)
+|+|++|||+||+++ +++.+.+.++..+|+|.+.. .++-.++++++++++|++++++.-..... .
T Consensus 2 kVlValSGGvDSsvla~lL~~~G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~ 81 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVID 81 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcCCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHH
Confidence 589999999999776 77778888889999998643 35677899999999999998775432211 1
Q ss_pred HHHHh--cCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeee-----cCCCCcc-cCCC
Q 042284 140 ALVRT--KGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQI-----DTSFEGI-DGGK 209 (430)
Q Consensus 140 ~~~~~--~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~-----d~~~~~~-~~~~ 209 (430)
.++.. .|..+ .....|-...|..-|.+..+ +++.++||+.+++.. .+ ..... |..|.-. ....
T Consensus 82 ~~~~~~~~g~tp---npc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~-~~---~L~rg~d~~kDqsy~l~~l~~~ 154 (346)
T PRK00143 82 YFLDEYKAGRTP---NPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD-GR---ELLRGVDPNKDQSYFLYQLTQE 154 (346)
T ss_pred HHHHHHHcCCCC---CcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc-cc---eEEEccCCCcChhhhhccCCHH
Confidence 12222 22211 11223444477777777776 667999999998863 22 11111 1111000 0000
Q ss_pred CCeEEEecccccchHHHHHHHHHcCCCCc
Q 042284 210 GSLVKWNPLANVKGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 210 ~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~ 238 (430)
.....+.||.+++++||..|.+++|||+.
T Consensus 155 ~l~~~i~PL~~~~K~eVr~~A~~~gl~~~ 183 (346)
T PRK00143 155 QLAKLLFPLGELTKPEVREIAEEAGLPVA 183 (346)
T ss_pred HhcceeccCccCCHHHHHHHHHHcCCCcC
Confidence 11246899999999999999999999863
No 119
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.07 E-value=7.2e-10 Score=94.25 Aligned_cols=75 Identities=16% Similarity=0.327 Sum_probs=59.3
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCC--CeEEEEEEcCCCc------------------------hHHHHHh
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM--GVKVGKFRADGDH------------------------KEFAKQK 390 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~--~v~~~~Vd~~~~~------------------------~~l~~~~ 390 (430)
++++++|+||++||++|+.+.|.++++++.++++ ++.++.|+++... ..+. +.
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~ 94 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE-KQ 94 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH-HH
Confidence 5799999999999999999999999999988763 5778888776541 2355 67
Q ss_pred CCCCCCCEEEEEeCCCcceeecC
Q 042284 391 LQLVSFPTILFFPKHSAKPVKYP 413 (430)
Q Consensus 391 ~~V~~~Ptl~~~~~g~~~~~~~~ 413 (430)
|+|.++|++++++.+++ .+...
T Consensus 95 ~~v~~iPt~~lid~~G~-iv~~~ 116 (132)
T cd02964 95 FKVEGIPTLVVLKPDGD-VVTTN 116 (132)
T ss_pred cCCCCCCEEEEECCCCC-EEchh
Confidence 99999999999975442 44433
No 120
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.07 E-value=4.4e-10 Score=83.60 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=50.7
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEE
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~ 401 (430)
++.|+++||++|+.+.+.++++++.+. ++.+..+|++++ ++++ ++++|.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~-~~l~-~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEF-PDLA-DEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccC-HhHH-HHcCCcccCEEEE
Confidence 678999999999999999999987654 499999999999 8999 9999999999865
No 121
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.06 E-value=1.4e-09 Score=98.17 Aligned_cols=87 Identities=17% Similarity=0.325 Sum_probs=66.3
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc----------------------hHHHHHhCCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH----------------------KEFAKQKLQLV 394 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~----------------------~~l~~~~~~V~ 394 (430)
.+++++|+|||+||++|+.+.|.++++++. ++.++.|+.+++. ..+. ..|+|.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLG-LDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHH-HhcCCC
Confidence 588999999999999999999999988642 4778888865431 1244 578999
Q ss_pred CCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 395 SFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 395 ~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
++|+.++++..+++...+.| ..+.++|.++|+.+
T Consensus 142 ~~P~t~vid~~G~i~~~~~G-~~~~~~l~~~i~~~ 175 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAG-DLNPRVWESEIKPL 175 (185)
T ss_pred cCCeEEEECCCceEEEEEec-CCCHHHHHHHHHHH
Confidence 99988888644443555555 68888888888754
No 122
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.04 E-value=2.7e-09 Score=89.41 Aligned_cols=101 Identities=10% Similarity=0.113 Sum_probs=82.3
Q ss_pred EcccchHHHHHHhcCCCCcEEEEEeC--CCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEE
Q 042284 322 SFRRTGIENLARLQNREDPWLIVLYA--PWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399 (430)
Q Consensus 322 ~lt~~~f~~~i~~~~~~k~vlV~Fya--~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl 399 (430)
.++..+++.++. .....+|+|-. .-++.+....=++++++++|.+.++.|++||++++ ++++ .+|+|.++||+
T Consensus 21 ~~~~~~~~~~~~---~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-~~LA-~~fgV~siPTL 95 (132)
T PRK11509 21 PVSESRLDDWLT---QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-EAIG-DRFGVFRFPAT 95 (132)
T ss_pred ccccccHHHHHh---CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-HHHH-HHcCCccCCEE
Confidence 445678888875 55556665543 35788889999999999999854699999999999 9999 99999999999
Q ss_pred EEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 400 LFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 400 ~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
++|++|+ .+....|.++.+++.++|+++
T Consensus 96 l~FkdGk--~v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 96 LVFTGGN--YRGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred EEEECCE--EEEEEeCcCCHHHHHHHHHHH
Confidence 9999999 444433478999999999875
No 123
>PRK14561 hypothetical protein; Provisional
Probab=99.03 E-value=4.5e-09 Score=95.31 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=92.2
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHH---HHhcCCCCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQAL---VRTKGLFSF 150 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~---~~~~g~~~~ 150 (430)
+++|++|||+||+++ +++.+. .++.++++|.|. ..-.++++++++.+|++++++..+....... ....+.|
T Consensus 2 kV~ValSGG~DSslll~~l~~~-~~v~a~t~~~g~--~~e~~~a~~~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~~P-- 76 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-YDVELVTVNFGV--LDSWKHAREAAKALGFPHRVLELDREILEKAVDMIIEDGYP-- 76 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-CCeEEEEEecCc--hhHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 489999999999877 555555 567788999885 2347899999999999998776554322221 2222221
Q ss_pred CccchhhhhhhhchHHHHHHHhcCceEEEeeeccCCc--ccccCCCeeeecCCCCcccCCCCCeEEEecccccchHHHHH
Q 042284 151 YEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSP--GTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWN 228 (430)
Q Consensus 151 ~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~--~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~dVw~ 228 (430)
...| ..+...-+..+..+++++++|+++||.. ..|..+..++ +..++.-++||+.|+++||..
T Consensus 77 ----~~~~-~~l~~~~l~~~a~g~~~Ia~G~n~DD~~et~~r~~~~a~~----------~~~gi~iirPL~~~~K~eI~~ 141 (194)
T PRK14561 77 ----NNAI-QYVHEHALEALAEEYDVIADGTRRDDRVPKLSRSEIQSLE----------DRKGVQYIRPLLGFGRKTIDR 141 (194)
T ss_pred ----Cchh-HHHHHHHHHHHHcCCCEEEEEecCCCcchhccHHHHhhhh----------cCCCcEEEeeCCCCCHHHHHH
Confidence 1123 3333444555557888999999999953 0233322221 112455789999999999999
Q ss_pred HHHHc
Q 042284 229 FLRAM 233 (430)
Q Consensus 229 yi~~~ 233 (430)
|.+..
T Consensus 142 la~~l 146 (194)
T PRK14561 142 LVERL 146 (194)
T ss_pred HHHhh
Confidence 98865
No 124
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.03 E-value=1.7e-09 Score=91.24 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=59.9
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEc-----------------------CCCchHHHHHhCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRA-----------------------DGDHKEFAKQKLQL 393 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~-----------------------~~~~~~l~~~~~~V 393 (430)
.+++++|+||++||++|+.+.|.++++++.+ ++.++.|+. |.. ..++ +.|+|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~-~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-GRVG-IDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc-chHH-HhcCC
Confidence 4789999999999999999999999998776 266666653 334 5778 88999
Q ss_pred CCCCEEEEEeCCCcceeecCCCCCCHHHH
Q 042284 394 VSFPTILFFPKHSAKPVKYPSEKRDVDSL 422 (430)
Q Consensus 394 ~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l 422 (430)
.++|+.++++..++....+.| ..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G-~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVG-PLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCceEEEEEec-cCChHhc
Confidence 999977777544433455556 5666543
No 125
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.02 E-value=1.8e-09 Score=90.30 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=67.9
Q ss_pred cccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEE---------------------cCC
Q 042284 323 FRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFR---------------------ADG 381 (430)
Q Consensus 323 lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd---------------------~~~ 381 (430)
++++++..... .+++++|+||++||++|+.+.|.+.++++.+. +..+.+| .+.
T Consensus 8 ~~g~~~~~~~~---~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 8 LDGEQFDLESL---SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred CCCCEeeHHHh---CCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 44444444332 46899999999999999999999999987742 3333222 133
Q ss_pred CchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHH
Q 042284 382 DHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAF 425 (430)
Q Consensus 382 ~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~ 425 (430)
+ .+++ ++|+|.++|+++++++++ +...+.| ..+.+.|.+-
T Consensus 82 ~-~~~~-~~~~i~~~P~~~vid~~g-i~~~~~g-~~~~~~~~~~ 121 (123)
T cd03011 82 D-GVIS-ARWGVSVTPAIVIVDPGG-IVFVTTG-VTSEWGLRLR 121 (123)
T ss_pred C-cHHH-HhCCCCcccEEEEEcCCC-eEEEEec-cCCHHHHHhh
Confidence 4 5788 899999999999998887 4556666 6888888653
No 126
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.00 E-value=2.6e-09 Score=95.28 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=64.9
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC----------------------chHHHHHhCCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD----------------------HKEFAKQKLQLV 394 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~----------------------~~~l~~~~~~V~ 394 (430)
.+++++|+||++||++|+.+.|.++++.+. ++.++.|+.++. +..+. +.|++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~-~~~~v~ 136 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLG-LDLGVY 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchH-HhcCCe
Confidence 578999999999999999999999888653 366666664321 03566 788999
Q ss_pred CCCEEEEEe-CCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 395 SFPTILFFP-KHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 395 ~~Ptl~~~~-~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
++|+.++++ +|+ +...+.| ..+.+++.++|+++
T Consensus 137 ~~P~~~~id~~G~-i~~~~~G-~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 137 GAPETFLVDGNGV-ILYRHAG-PLNNEVWTEGFLPA 170 (173)
T ss_pred eCCeEEEEcCCce-EEEEEec-cCCHHHHHHHHHHH
Confidence 999877775 554 3445555 68899999988865
No 127
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.98 E-value=5.8e-09 Score=86.30 Aligned_cols=100 Identities=11% Similarity=0.137 Sum_probs=77.5
Q ss_pred hHHHHHHh-cCCCCcEEEEEeCCCCHhHHHHHHH-H--HHHHHHHcCCCeEEEEEEcCCC-chHHHHHhCCCCCCCEEEE
Q 042284 327 GIENLARL-QNREDPWLIVLYAPWCHFCQAMEGS-Y--IELAEQLEGMGVKVGKFRADGD-HKEFAKQKLQLVSFPTILF 401 (430)
Q Consensus 327 ~f~~~i~~-~~~~k~vlV~Fya~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~Vd~~~~-~~~l~~~~~~V~~~Ptl~~ 401 (430)
+|++.++. .+++|+++|+|+++||++|+.|... | +++.+.+.. ++.+..+|.+.. ...++ ..|++.++|++++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~-~~~~~~~~P~~~~ 82 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFL-QSYKVDKYPHIAI 82 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHH-HHhCccCCCeEEE
Confidence 45555443 3468999999999999999999875 4 677777776 788999998752 26788 8999999999999
Q ss_pred EeC-CCcceeecCCCCCCHHHHHHHHHHh
Q 042284 402 FPK-HSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 402 ~~~-g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+.+ .+.......| ..+.++|.+.|++.
T Consensus 83 i~~~~g~~l~~~~G-~~~~~~f~~~L~~~ 110 (114)
T cd02958 83 IDPRTGEVLKVWSG-NITPEDLLSQLIEF 110 (114)
T ss_pred EeCccCcEeEEEcC-CCCHHHHHHHHHHH
Confidence 976 3433445555 78999999888764
No 128
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.98 E-value=7.2e-09 Score=102.39 Aligned_cols=160 Identities=12% Similarity=0.107 Sum_probs=98.1
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCC----------CCHHHHHHHHHHHHHhCCcEEEEccCchHH----H
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGR----------LNPETHQFFDTVEKHYGIRIEYTFPNAVEV----Q 139 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~----------~fpet~~~~~~~~~~~gl~i~~~~p~~~~~----~ 139 (430)
+++|++|||+||+++ +++.+.+.++..+|+++.. ..++-.+.++++++.+|++++++.-..... .
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~ 81 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFE 81 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcCCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHH
Confidence 589999999999776 7787888888889985321 234577889999999999998764332111 1
Q ss_pred HHHHh--cCCCCCCccchh-hhhhhhchHHHHHHHh---cCceEEEeeec---cCCcccccCCCeeeec--CCCCcc-cC
Q 042284 140 ALVRT--KGLFSFYEDGHQ-ECCRIRKVRPLKRALK---GLRAWITGQRK---DQSPGTRAEIPVVQID--TSFEGI-DG 207 (430)
Q Consensus 140 ~~~~~--~g~~~~~~~~~~-~cc~~~K~~pl~~~~~---~~~~~i~G~R~---~Es~~~R~~~~~~~~d--~~~~~~-~~ 207 (430)
.+... .|.. .++. .|-...|..-|.+++. +++.++||+.+ ++.. .+..+.....+ ..|.-. ..
T Consensus 82 ~~~~~y~~g~t----pnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~-~~~l~~~~d~~kDqsy~L~~l~ 156 (352)
T TIGR00420 82 PFIQEYKEGRT----PNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEG-KSLLLRALDKNKDQSYFLYHLS 156 (352)
T ss_pred HHHHHHHcCCC----CCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCC-cEEEEEccCCCcCcceecccCC
Confidence 11222 2221 1222 3445567677665553 66799999976 3331 22222222111 111000 00
Q ss_pred CCCCeEEEecccccchHHHHHHHHHcCCCCcc
Q 042284 208 GKGSLVKWNPLANVKGQDIWNFLRAMNIPINS 239 (430)
Q Consensus 208 ~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~p 239 (430)
...-...+.||.+|++.||..|.+++|||+..
T Consensus 157 ~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~ 188 (352)
T TIGR00420 157 HEQLAKLLFPLGELLKPEVRQIAKNAGLPTAE 188 (352)
T ss_pred HHHhhhhcccCCCCCHHHHHHHHHHcCCCCCC
Confidence 00012368999999999999999999998644
No 129
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.97 E-value=9.5e-09 Score=101.50 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=106.3
Q ss_pred CcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCC--CHHHHHHHHHHHHHhCCcEEEEccCchHHHHH-----HHh-
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRL--NPETHQFFDTVEKHYGIRIEYTFPNAVEVQAL-----VRT- 144 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~--fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~-----~~~- 144 (430)
++++|++|||+||+++ +|+.+.+.++..+|++.+.. -++..+.++++++++|++++++..... ++.. ...
T Consensus 6 ~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~-f~~~v~~~f~~~y 84 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKV-FRKQIIDYFIDEY 84 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHH-HHHHHHhhhhhHH
Confidence 4699999999999776 78888888899999987543 356688899999999999987754321 2111 111
Q ss_pred -cCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeee--ecC----CCCcccCCCCCe--E
Q 042284 145 -KGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQ--IDT----SFEGIDGGKGSL--V 213 (430)
Q Consensus 145 -~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~--~d~----~~~~~~~~~~~~--~ 213 (430)
.|..+ .....|-...|..-+.++.+ +++.++||+-+.-.. ......+. .|. .|.-..-. ... .
T Consensus 85 ~~g~tp---npC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~--~~~~~~l~~g~D~~kDQSyfL~~l~-~~~l~~ 158 (360)
T PRK14665 85 MSGHTP---VPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQW--IDGNYYITPAEDVDKDQSFFLWGLR-QEILQR 158 (360)
T ss_pred hccCCC---CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceec--cCCcEEEEeecCCCCCceEEecCCC-HHHHhh
Confidence 12110 12234555577777776665 677899998763210 01111110 111 11000000 011 2
Q ss_pred EEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCC
Q 042284 214 KWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCT 254 (430)
Q Consensus 214 ~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct 254 (430)
-+.||.+++++||.++.++.|++ +..++ =.|-|+++|+
T Consensus 159 ~ifPLg~~~K~eVr~~A~~~gl~--~~a~k-~eSq~iCF~~ 196 (360)
T PRK14665 159 MLLPMGGMTKSEARAYAAERGFE--KVAKK-RDSLGVCFCP 196 (360)
T ss_pred eeccCcCCCHHHHHHHHHHCCCC--ccCcC-CCCCccccCC
Confidence 37999999999999999999973 22333 3677888886
No 130
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.97 E-value=2.7e-09 Score=108.43 Aligned_cols=103 Identities=17% Similarity=0.371 Sum_probs=78.2
Q ss_pred Ecccc-hHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHH---HHHHHHHcCCCeEEEEEEcCCCch---HHHHHhCCCC
Q 042284 322 SFRRT-GIENLARLQNREDPWLIVLYAPWCHFCQAMEGSY---IELAEQLEGMGVKVGKFRADGDHK---EFAKQKLQLV 394 (430)
Q Consensus 322 ~lt~~-~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Vd~~~~~~---~l~~~~~~V~ 394 (430)
.++.. ..++.+. .+++|+|+|+|||+||-.||.+++.. .++..+.+ ++.+.++|.+++++ ++. ++|++-
T Consensus 458 ~~s~~~~L~~~la-~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~--~~vlLqaDvT~~~p~~~~lL-k~~~~~ 533 (569)
T COG4232 458 PISPLAELDQALA-EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ--DVVLLQADVTANDPAITALL-KRLGVF 533 (569)
T ss_pred ccCCHHHHHHHHH-hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC--CeEEEEeeecCCCHHHHHHH-HHcCCC
Confidence 33444 6677665 33446999999999999999999965 34444444 59999999999864 456 799999
Q ss_pred CCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 395 SFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 395 ~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
++|++++|..+.+......| ..+.+.+.+++++.
T Consensus 534 G~P~~~ff~~~g~e~~~l~g-f~~a~~~~~~l~~~ 567 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTG-FLTADAFLEHLERA 567 (569)
T ss_pred CCCEEEEECCCCCcCcCCcc-eecHHHHHHHHHHh
Confidence 99999999844433444555 89999999999875
No 131
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.96 E-value=2.2e-08 Score=99.05 Aligned_cols=159 Identities=15% Similarity=0.096 Sum_probs=101.0
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCC--------CHHHHHHHHHHHHHhCCcEEEEccCchHHH----HH
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRL--------NPETHQFFDTVEKHYGIRIEYTFPNAVEVQ----AL 141 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~--------fpet~~~~~~~~~~~gl~i~~~~p~~~~~~----~~ 141 (430)
+++|++|||+||+++ +++.+.+.++..+|+|++.. -++-.++++++++++|++++++.-...... .+
T Consensus 1 kVlValSGGvDSsvla~lL~~~g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~ 80 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPF 80 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHH
Confidence 489999999999776 77888888888999998742 346678999999999999987754332111 12
Q ss_pred HHh--cCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCee-ee-c----CCCCcc-cCCCC
Q 042284 142 VRT--KGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVV-QI-D----TSFEGI-DGGKG 210 (430)
Q Consensus 142 ~~~--~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~-~~-d----~~~~~~-~~~~~ 210 (430)
+.. .|..+ .....|-...|...+.+... +++.++||+.+++.. .-...+.+ .. | ..|.-. .....
T Consensus 81 i~~~~~g~tp---npc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~-~~~~~~~l~rg~d~~kdqsy~L~~~~~~~ 156 (349)
T cd01998 81 LEEYKKGRTP---NPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE-DNNGRYRLLRGVDPNKDQSYFLSQLSQEQ 156 (349)
T ss_pred HHHHHcCCCC---CchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee-cCCCceEEeecCCCCCCcceEeccCCHHH
Confidence 222 22211 12234444468878776665 677899999888642 11011111 11 1 100000 00000
Q ss_pred CeEEEecccccchHHHHHHHHHcCCCC
Q 042284 211 SLVKWNPLANVKGQDIWNFLRAMNIPI 237 (430)
Q Consensus 211 ~~~~~~Pi~dWt~~dVw~yi~~~~lp~ 237 (430)
....+.||.++++.||..|.+++|||.
T Consensus 157 l~~ii~PL~~~~K~eVr~~A~~~gl~~ 183 (349)
T cd01998 157 LSRLIFPLGDLTKPEVREIAKELGLPV 183 (349)
T ss_pred HhheeecCCCCCHHHHHHHHHHcCCCC
Confidence 134689999999999999999999984
No 132
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.93 E-value=6.2e-09 Score=84.92 Aligned_cols=75 Identities=23% Similarity=0.408 Sum_probs=61.9
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC----------------------chHHHHHhCCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD----------------------HKEFAKQKLQLV 394 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~----------------------~~~l~~~~~~V~ 394 (430)
.+++++|+||++||++|+...+.+.++.+.++..++.++.|+++.+ ...+. +.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELA-KAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHH-HhcCcC
Confidence 3789999999999999999999999999999754699999999872 14677 899999
Q ss_pred CCCEEEEEeCCCcceeec
Q 042284 395 SFPTILFFPKHSAKPVKY 412 (430)
Q Consensus 395 ~~Ptl~~~~~g~~~~~~~ 412 (430)
++|+++++++.++....+
T Consensus 97 ~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 97 GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred ccceEEEECCCCcEEEEe
Confidence 999999997554333333
No 133
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=98.92 E-value=5.7e-09 Score=106.18 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=95.3
Q ss_pred CCcEEEEechhHHHHHH-HHHHhc-----CCCcEEEEecCCCC--CHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHh
Q 042284 73 GNDIAIAFSGAEDVVLI-EYAKLT-----GRPFRVFSLDTGRL--NPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRT 144 (430)
Q Consensus 73 ~~~i~vs~SGGKDS~vl-~l~~~~-----~~~i~vi~~DTg~~--fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~ 144 (430)
+++++|++|||+||++| +++.+. +.++.++|+|.|.. ..+..+|++++++.+|+++++..-+.. .
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~~-------~ 87 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLD-------Q 87 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEecc-------C
Confidence 35699999999999876 665432 45788999999975 235568999999999999876543211 0
Q ss_pred cCCCCCCccchhhhhhhhchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecC--CCCcc--cCCCCCeEEEecccc
Q 042284 145 KGLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDT--SFEGI--DGGKGSLVKWNPLAN 220 (430)
Q Consensus 145 ~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~--~~~~~--~~~~~~~~~~~Pi~d 220 (430)
.+ .+...+.....-.-+.......+++++|+..||-. .--.+....... ...+- ....++...++||++
T Consensus 88 ~~------~~~e~~AR~~Ry~~~~~~~~~~~~l~~aHh~DDq~-ET~L~~L~rG~g~~gL~gm~~~~~~~~~~liRPLL~ 160 (436)
T PRK10660 88 RG------LGIEAAARQARYQAFARTLLPGEVLVTAQHLDDQC-ETFLLALKRGSGPAGLSAMAEVSPFAGTRLIRPLLA 160 (436)
T ss_pred CC------CCHHHHHHHHHHHHHHHHHHhCCEEEEcCchHHHH-HHHHHHHHcCCChhhccccceecccCCCcEeCCCcc
Confidence 00 11222332222244444444557899999998853 111111111000 00000 000123457899999
Q ss_pred cchHHHHHHHHHcCCCCcc
Q 042284 221 VKGQDIWNFLRAMNIPINS 239 (430)
Q Consensus 221 Wt~~dVw~yi~~~~lp~~p 239 (430)
.+++||..|.+.+||||..
T Consensus 161 ~~k~ei~~ya~~~~l~~~~ 179 (436)
T PRK10660 161 RSREELEQYAQAHGLRWIE 179 (436)
T ss_pred CCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999843
No 134
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.92 E-value=6.3e-09 Score=81.98 Aligned_cols=76 Identities=9% Similarity=0.093 Sum_probs=62.1
Q ss_pred CCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCC
Q 042284 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKR 417 (430)
Q Consensus 338 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~ 417 (430)
+..-+..|+++||++|....+.++++++.+.+ +.+..+|.++. ++++ ++|+|.++||+++ +|+ .. +.| ..
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~~~-~e~a-~~~~V~~vPt~vi--dG~--~~-~~G-~~ 81 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGALF-QDEV-EERGIMSVPAIFL--NGE--LF-GFG-RM 81 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhHhC-HHHH-HHcCCccCCEEEE--CCE--EE-EeC-CC
Confidence 44467778899999999999999999988764 99999999999 9999 9999999999964 776 22 235 45
Q ss_pred CHHHHH
Q 042284 418 DVDSLM 423 (430)
Q Consensus 418 ~~~~l~ 423 (430)
+.+++.
T Consensus 82 ~~~e~~ 87 (89)
T cd03026 82 TLEEIL 87 (89)
T ss_pred CHHHHh
Confidence 666654
No 135
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=5.7e-09 Score=116.80 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=72.1
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEc---C------------------------CCchHHHHH
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRA---D------------------------GDHKEFAKQ 389 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~---~------------------------~~~~~l~~~ 389 (430)
+++++||+|||+||++|+.+.|.|++++++|+++++.++.|.. + .+ ..+. +
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~-~~~~-~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGD-MYLW-R 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCc-hHHH-H
Confidence 5899999999999999999999999999999876688887742 1 12 4577 7
Q ss_pred hCCCCCCCEEEEEe-CCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 390 KLQLVSFPTILFFP-KHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 390 ~~~V~~~Ptl~~~~-~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+|+|.++|++++|+ +|+ +...+.| ....+.|.++|+++
T Consensus 497 ~~~V~~iPt~ilid~~G~-iv~~~~G-~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGK-LIAQLSG-EGHRKDLDDLVEAA 535 (1057)
T ss_pred hcCCCccceEEEECCCCe-EEEEEec-ccCHHHHHHHHHHH
Confidence 99999999999995 565 3445555 67889999988754
No 136
>PRK08349 hypothetical protein; Validated
Probab=98.91 E-value=1e-08 Score=93.42 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=85.5
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCC-CHHHHHHHHHHHHHhCCcE---EEEccCc--hHHHHHHHhcCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRL-NPETHQFFDTVEKHYGIRI---EYTFPNA--VEVQALVRTKGL 147 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~-fpet~~~~~~~~~~~gl~i---~~~~p~~--~~~~~~~~~~g~ 147 (430)
++++++|||+||+++ +++.+.+.++..+|+|.+.. .....+.++++.+.+|+++ .++.... ......+.+.+.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g~~v~av~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 81 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRGVEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLRELKK 81 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHhhCC
Confidence 478999999999776 77777788889999998532 1123344444444446654 3322110 111111111111
Q ss_pred CCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccccchHH
Q 042284 148 FSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQD 225 (430)
Q Consensus 148 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~d 225 (430)
......-|......-+.++.. +++.+++|...+|.. .-...+....+. ..++..+.|+++++++|
T Consensus 82 ----~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a-~~~l~nl~~~~~--------~~~i~i~rPL~~~~K~e 148 (198)
T PRK08349 82 ----EKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVA-SQTLDNLMVIST--------ATDLPVLRPLIGLDKEE 148 (198)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHH-HHHHHHHhcccc--------ccCCeEEcCCCCCCHHH
Confidence 011111245544555555444 667999999888852 211112111111 12345788999999999
Q ss_pred HHHHHHHcCCC
Q 042284 226 IWNFLRAMNIP 236 (430)
Q Consensus 226 Vw~yi~~~~lp 236 (430)
|..|.++.|++
T Consensus 149 I~~~a~~~g~~ 159 (198)
T PRK08349 149 IVKIAKEIGTF 159 (198)
T ss_pred HHHHHHHcCCh
Confidence 99999999953
No 137
>PLN02347 GMP synthetase
Probab=98.89 E-value=1.8e-08 Score=104.42 Aligned_cols=175 Identities=14% Similarity=0.197 Sum_probs=109.6
Q ss_pred HHHHHHHHHcC--CcEEEEechhHHHHHH-HHHHh-cCCCcEEEEecCCCC-CHHHHHHHHHHHHHhCCcEEEEccCchH
Q 042284 63 EIMDKAFQKFG--NDIAIAFSGAEDVVLI-EYAKL-TGRPFRVFSLDTGRL-NPETHQFFDTVEKHYGIRIEYTFPNAVE 137 (430)
Q Consensus 63 ~~i~~~~~~~~--~~i~vs~SGGKDS~vl-~l~~~-~~~~i~vi~~DTg~~-fpet~~~~~~~~~~~gl~i~~~~p~~~~ 137 (430)
+.++.+.+..+ ++++|++|||+||+|+ .|+.+ .+.++..+|+|+|.. ..|..+.++++++++|++++++.-...
T Consensus 217 ~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e~- 295 (536)
T PLN02347 217 EQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASER- 295 (536)
T ss_pred HHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcHH-
Confidence 33444444444 4599999999999877 77777 477799999999986 457777778999999999988754422
Q ss_pred HHHHHHh-cCCCCCCccchhhhhhhhch---HHHHHHHh------cC--ceEEEeeeccCCcc--cccCC-----Ceeee
Q 042284 138 VQALVRT-KGLFSFYEDGHQECCRIRKV---RPLKRALK------GL--RAWITGQRKDQSPG--TRAEI-----PVVQI 198 (430)
Q Consensus 138 ~~~~~~~-~g~~~~~~~~~~~cc~~~K~---~pl~~~~~------~~--~~~i~G~R~~Es~~--~R~~~-----~~~~~ 198 (430)
++.. .|. . ++..-|+++|. +-+.+..+ +. +.++.|+..+|-.. .|... ..+..
T Consensus 296 ---fl~~l~~~---~--~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~ 367 (536)
T PLN02347 296 ---FLSKLKGV---T--DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKS 367 (536)
T ss_pred ---HHhhCCCC---C--ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCCCCCccccccceee
Confidence 2222 232 2 44444555555 55555442 22 56779997776321 34322 11111
Q ss_pred cCCCCcccCCCCCeEEEecccccchHHHHHHHHHcCCCCccccccCCcc
Q 042284 199 DTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYIS 247 (430)
Q Consensus 199 d~~~~~~~~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~s 247 (430)
.-+-.+... .-..--+.||.+++++||.+..++.|||-+-++++-|+.
T Consensus 368 hhn~~~l~~-~~~~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~~p~p~ 415 (536)
T PLN02347 368 HHNVGGLPK-DMKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFPG 415 (536)
T ss_pred ecccccChH-HHHCccccchhhCcHHHHHHHHHHcCCCHHHhcCCCcCC
Confidence 000000000 001235789999999999999999999866677665543
No 138
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.85 E-value=6.6e-10 Score=99.76 Aligned_cols=100 Identities=23% Similarity=0.463 Sum_probs=90.7
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCC
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~P 397 (430)
..+..++.+|+..++. .-++++|+||||+.|+.+.|.|+..+.--.+-.+.+++||++.+ +-+. -+|-|...|
T Consensus 24 s~~~~~~eenw~~~l~-----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n-pgLs-GRF~vtaLp 96 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT-----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN-PGLS-GRFLVTALP 96 (248)
T ss_pred ceeEEecccchhhhhc-----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec-cccc-eeeEEEecc
Confidence 4799999999999874 67999999999999999999999998765555799999999999 9999 899999999
Q ss_pred EEEEEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 398 TILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 398 tl~~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
|++-.++|. .-+|.| .++..+++.|++
T Consensus 97 tIYHvkDGe--Frrysg-aRdk~dfisf~~ 123 (248)
T KOG0913|consen 97 TIYHVKDGE--FRRYSG-ARDKNDFISFEE 123 (248)
T ss_pred eEEEeeccc--cccccC-cccchhHHHHHH
Confidence 999999998 788887 799999999986
No 139
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.85 E-value=1.4e-08 Score=83.80 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=50.2
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcC---CC----------------chHHHHHhCCCCCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRAD---GD----------------HKEFAKQKLQLVSFP 397 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~---~~----------------~~~l~~~~~~V~~~P 397 (430)
.+++++|+||++||++|+.+.|.++++++.+.+ ++.++.+.-+ +. +.++. +.|++..+|
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~P 97 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELG-MAYQVSKLP 97 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHH-hhcCCCCcC
Confidence 378999999999999999999999999988866 5666655211 11 13345 577777888
Q ss_pred EEEEEeCCC
Q 042284 398 TILFFPKHS 406 (430)
Q Consensus 398 tl~~~~~g~ 406 (430)
+++++++.+
T Consensus 98 ~~~vid~~G 106 (114)
T cd02967 98 YAVLLDEAG 106 (114)
T ss_pred eEEEECCCC
Confidence 888886544
No 140
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4e-09 Score=93.42 Aligned_cols=87 Identities=22% Similarity=0.393 Sum_probs=76.5
Q ss_pred CCceEc-ccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCC--
Q 042284 318 QKLVSF-RRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLV-- 394 (430)
Q Consensus 318 ~~v~~l-t~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~-- 394 (430)
..+..+ +.+.+++.+. .+..+.|+|.|||.|.+.|+.+.|.|.++..+|..+.++|++||+... ++.+ ++|+|.
T Consensus 124 e~ikyf~~~q~~deel~-rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-pd~a-~kfris~s 200 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELD-RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-PDVA-AKFRISLS 200 (265)
T ss_pred hheeeecchhhHHHHhc-cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-cChH-HheeeccC
Confidence 457777 5566666654 667889999999999999999999999999999988999999999999 9999 999884
Q ss_pred ----CCCEEEEEeCCCc
Q 042284 395 ----SFPTILFFPKHSA 407 (430)
Q Consensus 395 ----~~Ptl~~~~~g~~ 407 (430)
.+||+++|.+|+.
T Consensus 201 ~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKE 217 (265)
T ss_pred cccccCCeEEEEccchh
Confidence 7999999999985
No 141
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.85 E-value=6.3e-08 Score=91.55 Aligned_cols=159 Identities=13% Similarity=0.139 Sum_probs=98.5
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHhcC-CCcEEEEecCCCC-CHHHHHHHHHHHHHhCCcEEEEccCchHH
Q 042284 63 EIMDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKLTG-RPFRVFSLDTGRL-NPETHQFFDTVEKHYGIRIEYTFPNAVEV 138 (430)
Q Consensus 63 ~~i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~~~-~~i~vi~~DTg~~-fpet~~~~~~~~~~~gl~i~~~~p~~~~~ 138 (430)
+.|+..++..+ .+++|++|||+||+++ +++.+.. .++..++++.+.. .++..+.++++++.+|++++++.-... +
T Consensus 11 ~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~-~ 89 (250)
T TIGR00552 11 DFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPI-A 89 (250)
T ss_pred HHHHHHHHHhCCCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHH-H
Confidence 45566565544 6799999999999776 6666653 3677777887643 467889999999999999887643322 1
Q ss_pred HHHHH-hcCCCCCCcc-chhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEE
Q 042284 139 QALVR-TKGLFSFYED-GHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVK 214 (430)
Q Consensus 139 ~~~~~-~~g~~~~~~~-~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~ 214 (430)
..+.. .......... ....-|...+..-|....+ +..++.||.+.+... .. + ..+ + .....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~----G~--~---t~~----g--d~~~~ 154 (250)
T TIGR00552 90 ASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELML----GY--F---TKY----G--DGGCD 154 (250)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhh----CC--e---ecc----c--CCccC
Confidence 11111 0111110000 1112244456666666665 445777887755421 10 0 011 0 12246
Q ss_pred EecccccchHHHHHHHHHcCCCC
Q 042284 215 WNPLANVKGQDIWNFLRAMNIPI 237 (430)
Q Consensus 215 ~~Pi~dWt~~dVw~yi~~~~lp~ 237 (430)
++||.+.++.||+.|.+.+|+|.
T Consensus 155 i~PL~~l~K~eV~~lA~~~g~p~ 177 (250)
T TIGR00552 155 IAPIGDLFKTQVYELAKRLNVPE 177 (250)
T ss_pred ccccCCCcHHHHHHHHHHHCccH
Confidence 89999999999999999999854
No 142
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.84 E-value=1.6e-08 Score=85.16 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=59.7
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCC-----C---------------------chHHHHHh
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADG-----D---------------------HKEFAKQK 390 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~-----~---------------------~~~l~~~~ 390 (430)
.+++++|+||++||++|+...|.++++++++++.++.++.|+.++ . +..+. +.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~-~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATW-RA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHH-HH
Confidence 468999999999999999999999999999987678888886521 1 13456 67
Q ss_pred CCCCCCCEEEEEeCCCcceeecCC
Q 042284 391 LQLVSFPTILFFPKHSAKPVKYPS 414 (430)
Q Consensus 391 ~~V~~~Ptl~~~~~g~~~~~~~~g 414 (430)
|++.++|+++++++.+++...+.|
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEec
Confidence 899999999999654433333333
No 143
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.84 E-value=2.8e-08 Score=88.11 Aligned_cols=83 Identities=17% Similarity=0.330 Sum_probs=63.8
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC------------chHHHHHhCCC--CCCCEEEEEeCCCc
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD------------HKEFAKQKLQL--VSFPTILFFPKHSA 407 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~------------~~~l~~~~~~V--~~~Ptl~~~~~g~~ 407 (430)
+|.||++||++|+++.|.+++++++++ +.++.|+.+.. ...+. ..|++ .++|+.++++..+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~-~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPYTLDGQGDTAFPEALPAPPDVMQ-TFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCCceEecCchhHHH-HHhCCCCCCCCeEEEEeCCCc
Confidence 777999999999999999999999984 67776766533 12355 68885 69999999966554
Q ss_pred ce-eecCCCCCCHHHHHHHHHHh
Q 042284 408 KP-VKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 408 ~~-~~~~gg~~~~~~l~~~i~~~ 429 (430)
+. ..+.| ..+.++|.+.|+++
T Consensus 149 i~~~~~~G-~~~~~~L~~~I~~l 170 (181)
T PRK13728 149 EALPLLQG-ATDAAGFMARMDTV 170 (181)
T ss_pred EEEEEEEC-CCCHHHHHHHHHHH
Confidence 32 34666 68999998888764
No 144
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.84 E-value=4.6e-08 Score=89.38 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=96.1
Q ss_pred EEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchH-HHH-HHHhcCCCCC-C
Q 042284 76 IAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVE-VQA-LVRTKGLFSF-Y 151 (430)
Q Consensus 76 i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~-~~~-~~~~~g~~~~-~ 151 (430)
++|++|||+||+++ +++.+.+.++..+++|.|....+-.++++++++.+|++++++...... +.. .....+.+.. .
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDEGYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALTDESEIPPQK 80 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHcCCcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhcccccccccCCCCCCCcC
Confidence 36899999999776 677777778889999999765667789999999999998766433210 000 0011111110 0
Q ss_pred ccc---hhhhh----hhhchHHHHHHHh--cCceEEEeeeccCCccc---ccC----CCeeeecCCCCcccCCCCCeEEE
Q 042284 152 EDG---HQECC----RIRKVRPLKRALK--GLRAWITGQRKDQSPGT---RAE----IPVVQIDTSFEGIDGGKGSLVKW 215 (430)
Q Consensus 152 ~~~---~~~cc----~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~---R~~----~~~~~~d~~~~~~~~~~~~~~~~ 215 (430)
... .+.+| ..+...-+..+.. +++.+++|...+|-... |.. +.... + .. ...++.-+
T Consensus 81 ~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~-~--~~----~~~~~~i~ 153 (201)
T TIGR00364 81 SNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHAL-N--LG----MLTPVKIR 153 (201)
T ss_pred ccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHH-H--hh----cCCCeEEE
Confidence 000 11222 2222222333332 67799999999884211 211 11100 0 00 01235568
Q ss_pred ecccccchHHHHHHHHHcC---CCCccccc
Q 042284 216 NPLANVKGQDIWNFLRAMN---IPINSLHS 242 (430)
Q Consensus 216 ~Pi~dWt~~dVw~yi~~~~---lp~~pLY~ 242 (430)
+|+++|++.||-++.+++| +|+.+-+.
T Consensus 154 ~Pl~~~~K~eI~~la~~~g~~~~~~~~t~s 183 (201)
T TIGR00364 154 APLMDLTKAEIVQLADELGVLDLVIKLTYS 183 (201)
T ss_pred ECCcCCCHHHHHHHHHHcCCccccHhhCCc
Confidence 9999999999999999999 87666554
No 145
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.82 E-value=3.1e-08 Score=86.48 Aligned_cols=111 Identities=23% Similarity=0.189 Sum_probs=71.2
Q ss_pred cEEEEechhHHHHHH-HHHHhcCC-CcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCCCc
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGR-PFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYE 152 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~-~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~ 152 (430)
.++|++|||+||+++ +++.+... .+.++++|.|...++..++++++++. |+++..+.++........... ...-..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~~~-l~~~~~ 80 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQLAR-FKAKVG 80 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHHHH-HhcccC
Confidence 389999999999776 77766544 67779999999889999999999999 888765555543322211110 000001
Q ss_pred cchhhhhhhhchHHHHHHHh-cCceEEEeeeccCCc
Q 042284 153 DGHQECCRIRKVRPLKRALK-GLRAWITGQRKDQSP 187 (430)
Q Consensus 153 ~~~~~cc~~~K~~pl~~~~~-~~~~~i~G~R~~Es~ 187 (430)
.....|...+.....+.+.+ +.+++++|..++|..
T Consensus 81 ~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~ 116 (154)
T cd01996 81 DPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQEF 116 (154)
T ss_pred CCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhc
Confidence 11223444343333333333 567999999999975
No 146
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.82 E-value=8.3e-09 Score=80.08 Aligned_cols=65 Identities=23% Similarity=0.458 Sum_probs=51.0
Q ss_pred CCCCcEEEEEeCCCCHhHHHHHHHH---HHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeC
Q 042284 336 NREDPWLIVLYAPWCHFCQAMEGSY---IELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPK 404 (430)
Q Consensus 336 ~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~ 404 (430)
+++++++|+|+++||++|+.|...+ .++.+.+.. ++.+++||.+..+.... +...++|+++++++
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~~~~~~---~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDEDPNAQ---FDRQGYPTFFFLDP 82 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTHHHHHH---HHHCSSSEEEEEET
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCCChhHH---hCCccCCEEEEeCC
Confidence 4799999999999999999999987 566665554 79999999987733222 12267999999863
No 147
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.81 E-value=8.3e-08 Score=88.96 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=96.6
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCc-EEEEccCchH-HHH-HHHhc--CCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIR-IEYTFPNAVE-VQA-LVRTK--GLF 148 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~-i~~~~p~~~~-~~~-~~~~~--g~~ 148 (430)
+++|+||||.||+++ .++.+.+.++..+++|.|.....-++.++++++++|++ .+++.-+... +.. .+... ..+
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s~Lt~~~~~~p 82 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVP 82 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccccCC
Confidence 589999999999877 56665555788999999987788889999999999996 6655333110 000 00000 001
Q ss_pred CCC---ccchhhhhhhhch--HHHHH---HHhcCceEEEeeeccCCcccccCCCee----eecCCCCcccCCCCCeEEEe
Q 042284 149 SFY---EDGHQECCRIRKV--RPLKR---ALKGLRAWITGQRKDQSPGTRAEIPVV----QIDTSFEGIDGGKGSLVKWN 216 (430)
Q Consensus 149 ~~~---~~~~~~cc~~~K~--~pl~~---~~~~~~~~i~G~R~~Es~~~R~~~~~~----~~d~~~~~~~~~~~~~~~~~ 216 (430)
... ...+..|-.-++. ..+.. .-.+++.+++|+..+|..+.|-..+-+ +.--.+.. ..++--..
T Consensus 83 ~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~~~~----~~~i~I~a 158 (231)
T PRK11106 83 DYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGM----AKDIRFET 158 (231)
T ss_pred ccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHHHHHHHHHhcc----CCCcEEEe
Confidence 110 1112233222222 22222 112778999999999843356552221 11100100 01355679
Q ss_pred cccccchHHHHHHHHHcC-CCC
Q 042284 217 PLANVKGQDIWNFLRAMN-IPI 237 (430)
Q Consensus 217 Pi~dWt~~dVw~yi~~~~-lp~ 237 (430)
|+.+|++.||+..-++.| +|+
T Consensus 159 Pl~~lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 159 PLMWLNKAETWALADYYGQLDL 180 (231)
T ss_pred cCCCCCHHHHHHHHHHcCCccc
Confidence 999999999999999999 887
No 148
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.81 E-value=9.8e-08 Score=90.15 Aligned_cols=160 Identities=15% Similarity=0.129 Sum_probs=98.5
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHhcC--CCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHH
Q 042284 63 EIMDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKLTG--RPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEV 138 (430)
Q Consensus 63 ~~i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~~~--~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~ 138 (430)
..|+..+++.+ .+++|++|||+||+++ .++.+.. .++..++++.+...++..+.++++++++|++++++..... +
T Consensus 12 ~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~-~ 90 (248)
T cd00553 12 LFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPA-V 90 (248)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHH-H
Confidence 45555555554 5699999999999776 6776654 4688899999987788999999999999999887754332 2
Q ss_pred HHHHHhcCC-CCCCccchhhh--hhhhchHHHHHHHhcCc--eEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeE
Q 042284 139 QALVRTKGL-FSFYEDGHQEC--CRIRKVRPLKRALKGLR--AWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLV 213 (430)
Q Consensus 139 ~~~~~~~g~-~~~~~~~~~~c--c~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~ 213 (430)
..+...... ..........| |...+..-+........ ++-||. ++|.. .. .+ ..++ .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~---~G--~~---t~~g------d~~~ 155 (248)
T cd00553 91 EAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELL---LG--YF---TKYG------DGAA 155 (248)
T ss_pred HHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHH---hC--Ce---eccC------Cccc
Confidence 222211100 00000111112 33344455555555444 333443 33321 11 11 1111 1234
Q ss_pred EEecccccchHHHHHHHHHcCCCCc
Q 042284 214 KWNPLANVKGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 214 ~~~Pi~dWt~~dVw~yi~~~~lp~~ 238 (430)
.++||.+..+.+|+.+.+..|+|.+
T Consensus 156 ~i~Pl~~l~K~eV~~la~~~~ip~~ 180 (248)
T cd00553 156 DINPIGDLYKTQVRELARYLGVPES 180 (248)
T ss_pred CccccCCCcHHHHHHHHHHHCchHH
Confidence 7899999999999999999998754
No 149
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.81 E-value=4e-08 Score=82.32 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=54.0
Q ss_pred hHHHHHHh-cCCCCcEEEEEeCCCCHhHHHHHHHH---HHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEE
Q 042284 327 GIENLARL-QNREDPWLIVLYAPWCHFCQAMEGSY---IELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402 (430)
Q Consensus 327 ~f~~~i~~-~~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~ 402 (430)
+|++.++. ..++|+++|+|+++||++|+.|...+ .++.+..+. ++..+.+|.+..+..+. ..+ .++||++|+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~--~~g-~~vPtivFl 86 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS--PDG-QYVPRIMFV 86 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC--ccC-cccCeEEEE
Confidence 45554432 34699999999999999999999975 566666654 57777777653312222 223 689999999
Q ss_pred eCCCcc
Q 042284 403 PKHSAK 408 (430)
Q Consensus 403 ~~g~~~ 408 (430)
+..+.+
T Consensus 87 d~~g~v 92 (130)
T cd02960 87 DPSLTV 92 (130)
T ss_pred CCCCCC
Confidence 665543
No 150
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.80 E-value=2.6e-08 Score=99.04 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=90.3
Q ss_pred EEEEechhHHHHHH-HHHHhc-CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCc-EEEEccCchHHH-----HHHHhcCC
Q 042284 76 IAIAFSGAEDVVLI-EYAKLT-GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIR-IEYTFPNAVEVQ-----ALVRTKGL 147 (430)
Q Consensus 76 i~vs~SGGKDS~vl-~l~~~~-~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~-i~~~~p~~~~~~-----~~~~~~g~ 147 (430)
|+|+||||.||+++ +++.+. +.++..+++|+|..- +..+.+++.++.+|++ ++++.-.. .+. ..+..+..
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~~-~~~e~a~~~a~~lG~~~~~viD~~~-ef~~~~i~~~i~an~~ 78 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPE-EEIEAIEEKALKLGAKKHVVVDLRE-EFVEDYIFPAIQANAL 78 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCcc-hhHHHHHHHHHHcCCCEEEEeccHH-HHHHHhhHHHHHhCcc
Confidence 57999999999776 666665 447999999999643 3358899999999986 66553221 122 11222111
Q ss_pred C-CCCccchhhhhhhhchHHHHHHHh--cCceEEEeeecc---CCcccccCCCeeeecCCCCcccCCCCCeEEEeccccc
Q 042284 148 F-SFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKD---QSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANV 221 (430)
Q Consensus 148 ~-~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~---Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dW 221 (430)
. ..+ .....+|+-+...-+.++.+ +++++++|.... +.. -|...... . +.+-.+.|+.+|
T Consensus 79 ~~g~y-~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~r-f~~~~~al--~----------pel~ViaPlre~ 144 (385)
T cd01999 79 YEGTY-PLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVR-FELAFYAL--N----------PDLKIIAPWRDW 144 (385)
T ss_pred ccCCC-cCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHH-HHHHHHhh--C----------CCCEEEcchhhh
Confidence 0 000 00011133333233333333 677999998763 321 12222211 1 235578999999
Q ss_pred ---chHHHHHHHHHcCCCCccc
Q 042284 222 ---KGQDIWNFLRAMNIPINSL 240 (430)
Q Consensus 222 ---t~~dVw~yi~~~~lp~~pL 240 (430)
+.+|+..|.+++|||+.--
T Consensus 145 ~~~sr~ev~~~A~~~Gip~~~~ 166 (385)
T cd01999 145 EFLSREEEIEYAEEHGIPVPVT 166 (385)
T ss_pred hcCCHHHHHHHHHHcCCCCccc
Confidence 9999999999999998643
No 151
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.79 E-value=2.6e-08 Score=99.20 Aligned_cols=148 Identities=21% Similarity=0.244 Sum_probs=91.1
Q ss_pred CcEEEEechhHHHHHH-HHHHhc-CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCCC
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLT-GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFY 151 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~-~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~ 151 (430)
++++|+||||.||+++ +++.+. +.++..+++|+|.. .+-++.++++++++|++..++..-...+ .+..-.|.+.
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq~-~~el~~a~~~A~~lGi~~~~v~dl~~ef---~~~~i~p~i~ 81 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQG-IEELEGLEAKAKASGAKQLVVKDLREEF---VRDYIFPCLR 81 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCCC-hHHHHHHHHHHHHcCCCEEEEEeCHHHH---HHhhcCHHHH
Confidence 4699999999999776 666555 77899999999963 4667889999999999753332222222 2222111111
Q ss_pred ccchhhhhhhhch---HH-----HHHHHh--cCceEEEeeec---cCCcccccCCCeeeecCCCCcccCCCCCeEEEecc
Q 042284 152 EDGHQECCRIRKV---RP-----LKRALK--GLRAWITGQRK---DQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPL 218 (430)
Q Consensus 152 ~~~~~~cc~~~K~---~p-----l~~~~~--~~~~~i~G~R~---~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi 218 (430)
......-|+.+|. +| +.+..+ +.++++.|... ||+. -|..+..+ ++ ..-.+.|+
T Consensus 82 ~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~r-f~~~~~al--~p----------el~ViaPl 148 (404)
T PLN00200 82 ANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVR-FELTFFAL--NP----------ELKVVAPW 148 (404)
T ss_pred cCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHH-HHHHHHHh--CC----------CCeeeCch
Confidence 1122122444444 11 112222 66788888875 3331 22222222 21 34467899
Q ss_pred cccc---hHHHHHHHHHcCCCCc
Q 042284 219 ANVK---GQDIWNFLRAMNIPIN 238 (430)
Q Consensus 219 ~dWt---~~dVw~yi~~~~lp~~ 238 (430)
.+|. .+|+.+|.+++|||+.
T Consensus 149 re~~~~~r~e~~~~A~~~Gipv~ 171 (404)
T PLN00200 149 REWDIKGREDLIEYAKKHNIPVP 171 (404)
T ss_pred hhcCCCCHHHHHHHHHHcCCCCC
Confidence 9985 9999999999999874
No 152
>smart00594 UAS UAS domain.
Probab=98.79 E-value=6.6e-08 Score=81.00 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=74.7
Q ss_pred chHHHHHHh-cCCCCcEEEEEeCCCCHhHHHHHHHH---HHHHHHHcCCCeEEEEEEcCCC-chHHHHHhCCCCCCCEEE
Q 042284 326 TGIENLARL-QNREDPWLIVLYAPWCHFCQAMEGSY---IELAEQLEGMGVKVGKFRADGD-HKEFAKQKLQLVSFPTIL 400 (430)
Q Consensus 326 ~~f~~~i~~-~~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Vd~~~~-~~~l~~~~~~V~~~Ptl~ 400 (430)
.+|++.++. .+++|+++|+|+++||+.|+.+.... .++.+.+.. ++.+..+|++.. ..+++ .+|++.++|+++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~-~~~~~~~~P~~~ 91 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVS-QFYKLDSFPYVA 91 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHH-HhcCcCCCCEEE
Confidence 456665443 34588999999999999999998864 677777766 789989998755 25788 899999999999
Q ss_pred EEeCCC-c----ceeecCCCCCCHHHHHHHH
Q 042284 401 FFPKHS-A----KPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 401 ~~~~g~-~----~~~~~~gg~~~~~~l~~~i 426 (430)
++.... . ......| ..+.++|+.+|
T Consensus 92 ~l~~~~g~~~~~~~~~~~G-~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEG-EISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccC-CCCHHHHHHhh
Confidence 995543 1 1223444 78999998876
No 153
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.78 E-value=5.5e-08 Score=97.00 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=92.7
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCC-cEEEEccCchHHHHHHHhcCCCCCCc
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGI-RIEYTFPNAVEVQALVRTKGLFSFYE 152 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl-~i~~~~p~~~~~~~~~~~~g~~~~~~ 152 (430)
+++|+||||.||+++ +++.+.+.++..+++|+|.. .+-.+.+++.++.+|+ +++++.... ++...+..+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g~~V~av~id~Gq~-~~e~~~a~~~a~~lGi~~~~viD~~~----ef~~~~~~~~i~- 74 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQP-EEDIDAIPEKALEYGAENHYTIDARE----EFVKDYGFAAIQ- 74 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEEEecCCC-hHHHHHHHHHHHHhCCCeEEEEeCHH----HHHHhhchhhhc-
Confidence 489999999999776 77777777899999999943 6678889999999997 676663322 222222222211
Q ss_pred cchhhhh-hhhch---HH-----HHHHHh--cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccc-
Q 042284 153 DGHQECC-RIRKV---RP-----LKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLAN- 220 (430)
Q Consensus 153 ~~~~~cc-~~~K~---~p-----l~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~d- 220 (430)
.+...|| +.++. +| +.+..+ ++++++.|.........|...+..... ++.-.+.|+.+
T Consensus 75 ~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r~~~~~~----------~~l~viaPLrew 144 (394)
T TIGR00032 75 ANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLN----------PDLKVIAPWRDL 144 (394)
T ss_pred CCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHhC----------CCCeEECchhhc
Confidence 1222333 23332 12 122222 677999998654321023222211111 24557899955
Q ss_pred -cchHHHHHHHHHcCCCCc
Q 042284 221 -VKGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 221 -Wt~~dVw~yi~~~~lp~~ 238 (430)
++.+|+-.|++++|||+.
T Consensus 145 ~l~r~ei~~ya~~~Gip~~ 163 (394)
T TIGR00032 145 NFTREEEIEYAIQCGIPYP 163 (394)
T ss_pred CCCHHHHHHHHHHcCCCee
Confidence 599999999999999884
No 154
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.77 E-value=6e-08 Score=87.72 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=61.6
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEE-------------cC-----CCchHHHHHhCCCCCCCE
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFR-------------AD-----GDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd-------------~~-----~~~~~l~~~~~~V~~~Pt 398 (430)
.+++++|+||++||++|+.+.|.+.++.+.+.. ++.++..| .+ .. .++. +.|+|.++|+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~-~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~-~~i~-~~y~v~~~P~ 149 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET-DVVMISDGTPAEHRRFLKDHELGGERYVVS-AEIG-MAFQVGKIPY 149 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC-cEEEEeCCCHHHHHHHHHhcCCCcceeech-hHHH-HhccCCccce
Confidence 578999999999999999999999998876532 34443311 00 12 4677 7899999999
Q ss_pred EEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 399 ILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
.+++++.+. +.+.+.....+.+.+.++.+
T Consensus 150 ~~lID~~G~--I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 150 GVLLDQDGK--IRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEEECCCCe--EEEccCCCCHHHHHHHHHHH
Confidence 988875542 33334234567777777654
No 155
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.77 E-value=6.2e-08 Score=96.69 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=93.1
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCC-HHHHHHHHHHHHHh---CC--cEEEEccCchHHHHHHHhcCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLN-PETHQFFDTVEKHY---GI--RIEYTFPNAVEVQALVRTKGL 147 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~f-pet~~~~~~~~~~~---gl--~i~~~~p~~~~~~~~~~~~g~ 147 (430)
+++|++|||.||+++ +++.+.+.++..+|+|+|... ++..+.++++++++ +. ++..+ +.......+....
T Consensus 174 kvlvllSGGiDS~vaa~ll~krG~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v--~~~~~~~~i~~~~- 250 (371)
T TIGR00342 174 KVLALLSGGIDSPVAAFMMMKRGCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVF--DFTDVQEEIIHII- 250 (371)
T ss_pred eEEEEecCCchHHHHHHHHHHcCCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEE--eCHHHHHHHHhcC-
Confidence 799999999999776 778788888999999988544 57788899999988 43 34333 2222222222111
Q ss_pred CCCCccchhhhhhhhchHHHHHHHh-----cCceEEEeeeccCCcc-cccCCCeeeecCCCCcccCCCCCeEEEeccccc
Q 042284 148 FSFYEDGHQECCRIRKVRPLKRALK-----GLRAWITGQRKDQSPG-TRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANV 221 (430)
Q Consensus 148 ~~~~~~~~~~cc~~~K~~pl~~~~~-----~~~~~i~G~R~~Es~~-~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dW 221 (430)
....+|..+|..-+..+.. +++.+++|...+|-.. .+.++...... .+..-++||+.+
T Consensus 251 ------~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~~~----------~~~~I~rPLi~~ 314 (371)
T TIGR00342 251 ------PEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQAV----------SNTPILRPLIGM 314 (371)
T ss_pred ------CCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHhcc----------CCCCEEeCCCCC
Confidence 1234666666643332222 6789999999988521 22222221110 123356799999
Q ss_pred chHHHHHHHHHcCC
Q 042284 222 KGQDIWNFLRAMNI 235 (430)
Q Consensus 222 t~~dVw~yi~~~~l 235 (430)
++.||..+.++.|.
T Consensus 315 ~K~EIi~~a~~iG~ 328 (371)
T TIGR00342 315 DKEEIIELAKEIGT 328 (371)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999999994
No 156
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.76 E-value=6.8e-08 Score=83.37 Aligned_cols=77 Identities=23% Similarity=0.413 Sum_probs=62.7
Q ss_pred CCCcEEEEEeCC-CCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc--------------------hHHHHHhCCCC-
Q 042284 337 REDPWLIVLYAP-WCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH--------------------KEFAKQKLQLV- 394 (430)
Q Consensus 337 ~~k~vlV~Fya~-wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~--------------------~~l~~~~~~V~- 394 (430)
++++++|.||++ ||++|+...|.+.++++.++++++.++.|..+.+. ..+. ++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALA-KALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHH-HHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHH-HHhCCcc
Confidence 688999999999 99999999999999999988767888888765441 4567 789988
Q ss_pred --------CCCEEEEEeCCCcceeecCC
Q 042284 395 --------SFPTILFFPKHSAKPVKYPS 414 (430)
Q Consensus 395 --------~~Ptl~~~~~g~~~~~~~~g 414 (430)
++|+++++...+++.....|
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeC
Confidence 99999999776654444444
No 157
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.75 E-value=3.9e-08 Score=97.76 Aligned_cols=147 Identities=15% Similarity=0.188 Sum_probs=89.9
Q ss_pred CcEEEEechhHHHHHH-HHHHhc-CC-CcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHH-----HHHHhc
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLT-GR-PFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQ-----ALVRTK 145 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~-~~-~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~-----~~~~~~ 145 (430)
++++|++|||.||++| +++.+. +. ++.++++|+|. .++-.+.++++++.+|++++++..... +. ..+..+
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~-~~~e~~~a~~~a~~lGi~~~vvd~~ee-f~~~~i~~~i~~n 80 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQ-PEEEIKEAEEKAKKLGDKHYTIDAKEE-FAKDYIFPAIKAN 80 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEeCHHH-HHHHHHHHHHHhC
Confidence 3599999999999777 666554 54 78999999984 345677899999999999887644321 22 112221
Q ss_pred CCC-CCCccchhhhhhhhchHHHHHHHh--cCceEEEeeecc--CCcccccCCCeeeecCCCCcccCCCCCeEEEecccc
Q 042284 146 GLF-SFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKD--QSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLAN 220 (430)
Q Consensus 146 g~~-~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~--Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~d 220 (430)
... ..+. .. ..|......-+.+..+ +++++++|.... |-..-|..+... +.--+.|+.+
T Consensus 81 ~~~~gYpl-~~-~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~~a~--------------~l~viaP~re 144 (394)
T PRK13820 81 ALYEGYPL-GT-ALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVFRAS--------------DLEVIAPIRE 144 (394)
T ss_pred ccccCCcC-cH-HHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhhHhh--------------cCeeeCchhc
Confidence 110 0000 11 1233333333444433 667999998543 321012222211 1224568877
Q ss_pred --cchHHHHHHHHHcCCCCc
Q 042284 221 --VKGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 221 --Wt~~dVw~yi~~~~lp~~ 238 (430)
++.+||.+|.+++|||+.
T Consensus 145 ~~ltK~ei~~ya~~~gip~~ 164 (394)
T PRK13820 145 LNLTREWEIEYAKEKGIPVP 164 (394)
T ss_pred cCCCHHHHHHHHHHcCCCCC
Confidence 599999999999999984
No 158
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.75 E-value=7.7e-08 Score=95.71 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=92.5
Q ss_pred CcEEEEechhHHHHHH-HHHHhc-CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCc-EEEEccCchHHH-----HHHHhc
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLT-GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIR-IEYTFPNAVEVQ-----ALVRTK 145 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~-~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~-i~~~~p~~~~~~-----~~~~~~ 145 (430)
++++|+||||.||+++ +++.+. +.++..+++|+|.. +-++.++++++++|+. ++++.-. ..+. ..+..+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~--~dle~a~~~A~~lGi~~~~viD~~-~ef~~~~i~~~i~~n 79 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG--EELEPIREKALKSGASEIYVEDLR-EEFVRDYVFPAIRAN 79 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH--HHHHHHHHHHHHcCCCeEEEEcCH-HHHHHHhHHHHHHhC
Confidence 4699999999999777 666665 78899999999975 5677889999999974 5544222 1222 122221
Q ss_pred ----CCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeec--cC-CcccccCCCeeeecCCCCcccCCCCCeEEEe
Q 042284 146 ----GLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRK--DQ-SPGTRAEIPVVQIDTSFEGIDGGKGSLVKWN 216 (430)
Q Consensus 146 ----g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~--~E-s~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~ 216 (430)
|..+ .....|+-.-..-+.++.+ +.+++++|... +| +. -|..+..+ ++ ..-.+.
T Consensus 80 ~~y~g~yp----l~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~r-f~~g~~al--~p----------el~Vis 142 (399)
T PRK00509 80 ALYEGKYP----LGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVR-FELGIAAL--AP----------DLKVIA 142 (399)
T ss_pred hHhcCcCC----CchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHHH-HHHHHHHh--CC----------CCeeec
Confidence 1111 1111222222444444443 66789999875 33 31 22233322 22 234688
Q ss_pred ccccc---chHHHHHHHHHcCCCCc
Q 042284 217 PLANV---KGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 217 Pi~dW---t~~dVw~yi~~~~lp~~ 238 (430)
|+.+| +.+|+.+|.+++|||+.
T Consensus 143 Plre~~~~tK~eir~~A~~~Gipv~ 167 (399)
T PRK00509 143 PWREWDLKSREELIAYAEEHGIPIP 167 (399)
T ss_pred chhhcCCCCHHHHHHHHHHcCCCCC
Confidence 99999 99999999999999984
No 159
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.73 E-value=1.2e-07 Score=94.24 Aligned_cols=156 Identities=12% Similarity=0.131 Sum_probs=98.2
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhC-------CcEEEEccCc-hHHHHHHHhc
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYG-------IRIEYTFPNA-VEVQALVRTK 145 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~g-------l~i~~~~p~~-~~~~~~~~~~ 145 (430)
++++++|||+||.|+ .++.+.+.++..+|+|+| ++..+-++++++.++ +++.++.... ..+...+...
T Consensus 182 kvlvllSGGiDSpVAa~ll~krG~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~~~v~~~i~~~ 258 (381)
T PRK08384 182 KVVALLSGGIDSPVAAFLMMKRGVEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQERERIIQKLKEL 258 (381)
T ss_pred cEEEEEeCChHHHHHHHHHHHcCCeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEEEChHHHHHHHHHHHHh
Confidence 799999999999776 788888999999999988 677788888888776 4455543321 1122222221
Q ss_pred CCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCccccc---CCCeeeecCCCCcccCCCCCeEEEecccc
Q 042284 146 GLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRA---EIPVVQIDTSFEGIDGGKGSLVKWNPLAN 220 (430)
Q Consensus 146 g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~---~~~~~~~d~~~~~~~~~~~~~~~~~Pi~d 220 (430)
... ..+..-|......-+.+..+ ++++++||...+|-. -+ ++...... .....++||+.
T Consensus 259 ~~~----~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqva--SQtl~Nl~~i~~~----------~~lpilRPLi~ 322 (381)
T PRK08384 259 KKE----NYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVA--SQTLENMYIVSQA----------SDLPIYRPLIG 322 (381)
T ss_pred ccC----CCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHH--HHHHHHHHHHhcc----------CCCcEEeeCCC
Confidence 111 11111133333344444443 667999999887742 22 22222111 23468999999
Q ss_pred cchHHHHHHHHHcC-CCCccccccCCcccCCcCCC
Q 042284 221 VKGQDIWNFLRAMN-IPINSLHSQGYISIGCEPCT 254 (430)
Q Consensus 221 Wt~~dVw~yi~~~~-lp~~pLY~~Gy~siGC~~Ct 254 (430)
+.++||-.|.++.| .++.- .++ -+|.+.+
T Consensus 323 ~dK~EIi~~Ar~iGT~~~s~---~~~--~dc~f~p 352 (381)
T PRK08384 323 MDKEEIVAIAKTIGTFELST---LPE--DEIPFIP 352 (381)
T ss_pred CCHHHHHHHHHHcCCccccc---CCC--CceEEeC
Confidence 99999999999999 76543 333 2465554
No 160
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.71 E-value=1.2e-07 Score=94.05 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=95.7
Q ss_pred CcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCC-cEEEEccCchHHHHHHH--------
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGI-RIEYTFPNAVEVQALVR-------- 143 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl-~i~~~~p~~~~~~~~~~-------- 143 (430)
++++|+||||-||+++ .++.+.+.++..+++|.|....+-++.++++++++|+ +++++.-......+++.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~ 82 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEG 82 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHcCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchh
Confidence 4699999999999776 6776777889999999998767778889999999998 46666443332222221
Q ss_pred hcCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeee---ccCCcccccCCCeeeecCCCCcccCCCCCeEEEecc
Q 042284 144 TKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQR---KDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPL 218 (430)
Q Consensus 144 ~~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R---~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi 218 (430)
..|..+.+. ..+| .|..-+.+..+ +++++++|.. .|+.. -|..+.++. + .-.+.|+
T Consensus 83 y~G~yPl~~--~nR~---~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~r-frpg~~Al~-e------------l~ViaPl 143 (400)
T PRK04527 83 YQGQYPLLV--SDRY---LIVDAALKRAEELGTRIIAHGCTGMGNDQVR-FDLAVKALG-D------------YQIVAPI 143 (400)
T ss_pred hcCCCCCcc--ccHH---HHHHHHHHHHHHCCCCEEEecCcCCCCchhh-ccHHHHHhh-c------------CCccchH
Confidence 122222211 1222 34444444443 6789999996 33332 344444332 1 2257899
Q ss_pred ccc------chHHHHHHHHHcCCCCc
Q 042284 219 ANV------KGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 219 ~dW------t~~dVw~yi~~~~lp~~ 238 (430)
.+| ..+|.-+|+++||||+.
T Consensus 144 re~~~~k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 144 REIQKEHTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred HHhcCcccccHHHHHHHHHHcCCCCC
Confidence 998 45677899999999984
No 161
>PRK13980 NAD synthetase; Provisional
Probab=98.71 E-value=3.1e-07 Score=87.51 Aligned_cols=155 Identities=15% Similarity=0.215 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHhc--CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchH
Q 042284 62 LEIMDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKLT--GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVE 137 (430)
Q Consensus 62 ~~~i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~~--~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~ 137 (430)
...|+..+.+++ .+++|++|||+||+++ +++.+. ..++..++++.+...++..+.++.+++++|++++++.-...
T Consensus 18 ~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~~- 96 (265)
T PRK13980 18 VDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPI- 96 (265)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHHH-
Confidence 456666667766 6799999999999776 666665 35788999999987788899999999999999877643321
Q ss_pred HHHHHHhcCCCCCCccchhhh--hhhhchHHHHHHHhcCc--eEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeE
Q 042284 138 VQALVRTKGLFSFYEDGHQEC--CRIRKVRPLKRALKGLR--AWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLV 213 (430)
Q Consensus 138 ~~~~~~~~g~~~~~~~~~~~c--c~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~ 213 (430)
...+... .+.. .....| |...+..-+....+... ++-||-+ +|.. .. .+ ..|+ + ...
T Consensus 97 ~~~~~~~--~~~~--~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~-sE~~--~G---~~---t~~g----D--~~~ 157 (265)
T PRK13980 97 VDAFFSA--IPDA--DRLRVGNIMARTRMVLLYDYANRENRLVLGTGNK-SELL--LG---YF---TKYG----D--GAV 157 (265)
T ss_pred HHHHHHH--cccc--cchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCH-hHHH--hC---Cc---cCCC----C--ccc
Confidence 2222111 1110 111111 33333444455444444 3334422 2211 11 11 1111 1 123
Q ss_pred EEecccccchHHHHHHHHHcCCC
Q 042284 214 KWNPLANVKGQDIWNFLRAMNIP 236 (430)
Q Consensus 214 ~~~Pi~dWt~~dVw~yi~~~~lp 236 (430)
.++||.++++.||+...+..|+|
T Consensus 158 ~l~Pl~~l~K~eV~~la~~lgip 180 (265)
T PRK13980 158 DLNPIGDLYKTQVRELARHLGVP 180 (265)
T ss_pred CcccCCCCcHHHHHHHHHHHCch
Confidence 58999999999999999999986
No 162
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.70 E-value=1.2e-07 Score=86.47 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=40.5
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRAD 380 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~ 380 (430)
.++++||.|||+||++|+...|.++++.+++++.++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 47899999999999999999999999999998767999999874
No 163
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.65 E-value=2.2e-07 Score=86.37 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=68.6
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCC-------Cc---hHHHHHhCC--------------
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADG-------DH---KEFAKQKLQ-------------- 392 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~-------~~---~~l~~~~~~-------------- 392 (430)
.++++||.||++||++|+...|.+++++++++++++.++.|+++. .. .+++.++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 468999999999999999999999999999987679999998742 10 112101211
Q ss_pred --------------------CCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 393 --------------------LVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 393 --------------------V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
|...|+.++++..+++...+.| ..+.++|.+.|+++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G-~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP-TTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 1235888888766655666666 68899999999875
No 164
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.62 E-value=2.4e-07 Score=91.44 Aligned_cols=154 Identities=16% Similarity=0.118 Sum_probs=96.3
Q ss_pred CcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHH-----HHH--hc
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQA-----LVR--TK 145 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~-----~~~--~~ 145 (430)
++++|++|||.||+++ +++.+.+.++..+|++.. .+..+.++++++++|+++.++.-... ++. ++. ..
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL~~~G~eV~av~~~~~---~~e~~~a~~va~~LGI~~~vvd~~~~-f~~~v~~~~~~~~~~ 81 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW---GDEPQDARELAARMGIEHYVADERVP-FKDTIVKNFIDEYRQ 81 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHHHHcCCcEEEEEecCc---chhHHHHHHHHHHhCCCEEEEeChHH-HHHHHHHHhHHHHHc
Confidence 5699999999999876 677777888888999874 23345799999999999877644322 221 111 12
Q ss_pred CCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeee-cC----CC-CcccCCCCCe--EEE
Q 042284 146 GLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQI-DT----SF-EGIDGGKGSL--VKW 215 (430)
Q Consensus 146 g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~-d~----~~-~~~~~~~~~~--~~~ 215 (430)
|..+ .....|-...|..-|.+... +++.++||+.+.-.. .-.....+.. |. .| -... .+.. ..+
T Consensus 82 G~tp---npC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~-~~~~~~l~~g~D~~kDQsyfl~~l--~~~~l~~~i 155 (362)
T PRK14664 82 GRTP---NPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEE-RNGHIYIVAGDDDKKDQSYFLWRL--GQDILRRCI 155 (362)
T ss_pred CCCC---CCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccccc-CCCeEEEEEcCCCcchHHHHHHhc--CHHHHhHHh
Confidence 2211 11223444567777777665 667899999885432 1111111111 11 11 0000 0111 357
Q ss_pred ecccccchHHHHHHHHHcCCCC
Q 042284 216 NPLANVKGQDIWNFLRAMNIPI 237 (430)
Q Consensus 216 ~Pi~dWt~~dVw~yi~~~~lp~ 237 (430)
.||.++++.||..|.+++|||.
T Consensus 156 fPLg~~~K~evr~~A~~~gl~~ 177 (362)
T PRK14664 156 FPLGNYTKQTVREYLREKGYEA 177 (362)
T ss_pred ccCccCCHHHHHHHHHHcCCCC
Confidence 8999999999999999999975
No 165
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.62 E-value=1.2e-07 Score=89.69 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=78.1
Q ss_pred CCceEccc-chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCC
Q 042284 318 QKLVSFRR-TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSF 396 (430)
Q Consensus 318 ~~v~~lt~-~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~ 396 (430)
..|.+++. +.|-+.+.....+..|||+||.+.++.|+.|...|..||.+|+. ++|++|..+.- + +. ..|.+..+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~-~-~~-~~f~~~~L 199 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKC-P-AS-ENFPDKNL 199 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGC-C-TT-TTS-TTC-
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhcc-C-cc-cCCcccCC
Confidence 46888865 77888776444566899999999999999999999999999997 99999998766 4 55 78999999
Q ss_pred CEEEEEeCCCcc-----eeecCCCCCCHHHHHHHHHHh
Q 042284 397 PTILFFPKHSAK-----PVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 397 Ptl~~~~~g~~~-----~~~~~gg~~~~~~l~~~i~~~ 429 (430)
||+++|++|..+ +....|...+..+|..||.++
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999742 122334467888999998753
No 166
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.61 E-value=2.7e-07 Score=92.92 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=97.3
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCC-CCCHHHHHHHHHHHHHhC-----CcEEEEccCchHHHHHHHhcCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTG-RLNPETHQFFDTVEKHYG-----IRIEYTFPNAVEVQALVRTKGL 147 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg-~~fpet~~~~~~~~~~~g-----l~i~~~~p~~~~~~~~~~~~g~ 147 (430)
++++++|||.||+++ +++.+.+.++..+|+++. +..+...+.+.+++++++ +++.++.-.. ....+....
T Consensus 178 kvvvllSGGiDS~vaa~l~~k~G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~~--~~~~i~~~~- 254 (394)
T PRK01565 178 KALLLLSGGIDSPVAGYLAMKRGVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFTE--IQEEIKKKV- 254 (394)
T ss_pred CEEEEECCChhHHHHHHHHHHCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECHH--HHHHHhhcC-
Confidence 699999999999877 777777878888888773 344556677777777774 7776664322 112222111
Q ss_pred CCCCccchhhhhhhhchHHHHHH---Hh--cCceEEEeeeccCCc-ccccCCCeeeecCCCCcccCCCCCeEEEeccccc
Q 042284 148 FSFYEDGHQECCRIRKVRPLKRA---LK--GLRAWITGQRKDQSP-GTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANV 221 (430)
Q Consensus 148 ~~~~~~~~~~cc~~~K~~pl~~~---~~--~~~~~i~G~R~~Es~-~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dW 221 (430)
..+.+|..+|..-+..+ .. ++++++||...+|-. ..+.++..+... ....-++||+.+
T Consensus 255 ------~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~~i~~~----------~~~~V~rPLig~ 318 (394)
T PRK01565 255 ------PESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMYAINAV----------TNLPVLRPLIGM 318 (394)
T ss_pred ------CCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHHHhhc----------cCcEEEECCCCC
Confidence 11235555555443322 22 667999999988852 133433322110 124467999999
Q ss_pred chHHHHHHHHHcCCCCccccccCCcccCCcCCCC
Q 042284 222 KGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTR 255 (430)
Q Consensus 222 t~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~ 255 (430)
++.||..+.++.|+. ++..+ ++-.| ||+
T Consensus 319 ~K~EI~~lAr~iG~~--~~s~~--p~~~c--c~~ 346 (394)
T PRK01565 319 DKEEIIEIAKEIGTY--DISIL--PYEDC--CTI 346 (394)
T ss_pred CHHHHHHHHHHhCCH--HHhcC--CCcCe--eee
Confidence 999999999999952 22222 34456 764
No 167
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.2e-06 Score=74.08 Aligned_cols=96 Identities=19% Similarity=0.342 Sum_probs=74.3
Q ss_pred HHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHH---HHHHHHHcCCCeEEEEEEcCCC---------------chHHHHHh
Q 042284 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSY---IELAEQLEGMGVKVGKFRADGD---------------HKEFAKQK 390 (430)
Q Consensus 329 ~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Vd~~~~---------------~~~l~~~~ 390 (430)
++.-.....++..+++|-++.|.+|..|+..+ .++.+.+.+ ++.++.+|+... ..+|+ +.
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa-~k 110 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELA-QK 110 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHH-HH
Confidence 33333345789999999999999999999987 667777777 789999887543 15899 99
Q ss_pred CCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 391 LQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 391 ~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
|+|+++||+++|+..++......| ....+++...++
T Consensus 111 f~vrstPtfvFfdk~Gk~Il~lPG-Y~ppe~Fl~vlk 146 (182)
T COG2143 111 FAVRSTPTFVFFDKTGKTILELPG-YMPPEQFLAVLK 146 (182)
T ss_pred hccccCceEEEEcCCCCEEEecCC-CCCHHHHHHHHH
Confidence 999999999999765443444444 889998877664
No 168
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.57 E-value=4.6e-07 Score=79.04 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=65.9
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcC-------CC-c--hHHHHHhCCC-------------
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRAD-------GD-H--KEFAKQKLQL------------- 393 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~-------~~-~--~~l~~~~~~V------------- 393 (430)
.+|++||.|||+||++|+...|.++++.++++++++.++.|++. .. + .+++++++++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 47889999999999999999999999999998767999999862 11 0 2223111111
Q ss_pred -------------CCCCE----EEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 394 -------------VSFPT----ILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 394 -------------~~~Pt----l~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
.++|+ .++++..++....+.| ..+.++|.+.|+++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g-~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP-EEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECC-CCCHHHHHHHHHHh
Confidence 14776 6666554444556666 68899999988875
No 169
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.56 E-value=7.4e-07 Score=88.08 Aligned_cols=110 Identities=18% Similarity=0.124 Sum_probs=75.7
Q ss_pred cEEEEechhHHHHHH-HHH-HhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCCCc
Q 042284 75 DIAIAFSGAEDVVLI-EYA-KLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYE 152 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~-~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~ 152 (430)
.++|++||||||+++ +++ .+.+..+.++++|.|...+...+.++++++++|++++++.++...+..+.... ... ..
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~-~~~-~~ 138 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQRAY-FKK-VG 138 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHH-Hhc-cC
Confidence 499999999999776 566 44566667799999988788889999999999999999888765443332111 000 01
Q ss_pred cchhhhhhhhchHHHHHHHh-cCceEEEeeeccCC
Q 042284 153 DGHQECCRIRKVRPLKRALK-GLRAWITGQRKDQS 186 (430)
Q Consensus 153 ~~~~~cc~~~K~~pl~~~~~-~~~~~i~G~R~~Es 186 (430)
.....|.......+.+.+.+ +++++++|...+|-
T Consensus 139 ~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~ 173 (343)
T TIGR03573 139 DPEWPQDHAIFASVYQVALKFNIPLIIWGENIAEE 173 (343)
T ss_pred CCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHh
Confidence 11223444454455554444 57899999999973
No 170
>PLN02412 probable glutathione peroxidase
Probab=98.56 E-value=4.8e-07 Score=80.16 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=67.0
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCC-------CchHH----HHHhCC-------------
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADG-------DHKEF----AKQKLQ------------- 392 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~-------~~~~l----~~~~~~------------- 392 (430)
.++++||.||++||++|+...|.++++.++|++.++.++.|+++. ...++ + ++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~-~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVC-TRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHH-HccCCCCceEeEEeeCC
Confidence 468999999999999999999999999999998679999998742 10121 1 1211
Q ss_pred ---------------------CCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 393 ---------------------LVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 393 ---------------------V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
|...|+.++++.++++...+.| ..+.++|.+.|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g-~~~~~~l~~~i~~~ 163 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAP-TTSPLKIEKDIQNL 163 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 3345788888655554555555 68888998888765
No 171
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.56 E-value=2e-07 Score=85.42 Aligned_cols=177 Identities=19% Similarity=0.206 Sum_probs=86.5
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCC-cEEEEccCc-hHH--HHHHHhc-CCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGI-RIEYTFPNA-VEV--QALVRTK-GLF 148 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl-~i~~~~p~~-~~~--~~~~~~~-g~~ 148 (430)
+++|.||||.||+++ .++...+.++..+++|.|.....-++.++++++++|+ +.+++.-.. ..+ ..+.... .++
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L~~~~~~v~ 80 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEGYEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSALTDDSIEVP 80 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHHHHHTT----
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCcccCCCcCCc
Confidence 478999999999876 6677777889999999998888888999999999999 776664331 100 0111111 011
Q ss_pred CC--C-ccchhhhhhhhchHHHH-----HHHhcCceEEEeeeccCCcccccCCCee-eecCCCCcccCCCCCeEEEeccc
Q 042284 149 SF--Y-EDGHQECCRIRKVRPLK-----RALKGLRAWITGQRKDQSPGTRAEIPVV-QIDTSFEGIDGGKGSLVKWNPLA 219 (430)
Q Consensus 149 ~~--~-~~~~~~cc~~~K~~pl~-----~~~~~~~~~i~G~R~~Es~~~R~~~~~~-~~d~~~~~~~~~~~~~~~~~Pi~ 219 (430)
.. . .......--.|-..-|. ....+.+.+++|+.++|..+..-..+.+ ..-..... .+...++.-..|++
T Consensus 81 ~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~~-~~~~~~v~i~~P~~ 159 (209)
T PF06508_consen 81 EEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNRLLN-LGEGGPVRIETPLI 159 (209)
T ss_dssp --------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHH-HHHTS--EEE-TTT
T ss_pred ccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHHHHH-hcCCCCEEEEecCC
Confidence 00 0 00000000001111111 1112667899999999852122222111 00000000 00012455679999
Q ss_pred ccchHHHHHHHHHcCCCCccccccCCcc----cCCcCC
Q 042284 220 NVKGQDIWNFLRAMNIPINSLHSQGYIS----IGCEPC 253 (430)
Q Consensus 220 dWt~~dVw~yi~~~~lp~~pLY~~Gy~s----iGC~~C 253 (430)
+|++.||+....+.|+|+.--+.. |.. ..|-.|
T Consensus 160 ~~tK~eiv~~~~~lg~~~~~T~SC-y~~~~~~~~CG~C 196 (209)
T PF06508_consen 160 DLTKAEIVKLGVELGVPLELTWSC-YRGGEKGKHCGRC 196 (209)
T ss_dssp T--HHHHHHHHHHTTHHHHH-B-S-TTS--BTTTTSSS
T ss_pred CCCHHHHHHHHHHcCCCHHHccCC-CCCCCCCCCCCCC
Confidence 999999999999999887665544 222 455555
No 172
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.56 E-value=6.6e-07 Score=79.51 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=68.6
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC----------------------------chHHHH
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD----------------------------HKEFAK 388 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~----------------------------~~~l~~ 388 (430)
.++++||+||++||+.|....+.+.++.+++++.++.|+.|..+.. +..++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~- 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA- 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH-
Confidence 5789999999999999999999999999999865799999987541 13456
Q ss_pred HhCCCCCCCEEEEEeCCCcceeec-----CC---CCCCHHHHHHHHHHh
Q 042284 389 QKLQLVSFPTILFFPKHSAKPVKY-----PS---EKRDVDSLMAFVNAL 429 (430)
Q Consensus 389 ~~~~V~~~Ptl~~~~~g~~~~~~~-----~g---g~~~~~~l~~~i~~~ 429 (430)
+.|+|..+|+++++++++++.... .+ ...+.+++.+.|+.+
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHH
Confidence 688999999999997555322111 00 124567787777654
No 173
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.50 E-value=4.3e-07 Score=73.64 Aligned_cols=67 Identities=33% Similarity=0.602 Sum_probs=61.1
Q ss_pred CCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcC-CCchHHHHHhCC--CCCCCEEEEEeCCCc
Q 042284 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRAD-GDHKEFAKQKLQ--LVSFPTILFFPKHSA 407 (430)
Q Consensus 338 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~-~~~~~l~~~~~~--V~~~Ptl~~~~~g~~ 407 (430)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .. +++. ..|+ +..+|+++++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~-~~~~-~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDEN-PDLA-AEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCC-hHHH-HHHhhhhccCCeEEEEeCcch
Confidence 78999999999999999999999999999986 6899999997 66 7888 8999 999999999988875
No 174
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.47 E-value=1.5e-06 Score=80.01 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC----------chHHHHHhCCCCCCCEEEEEeCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD----------HKEFAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~----------~~~l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
.++.-|++||.+.|+.|+.+.|++..++++|+ +.+..|++|.. +..++ ++++|..+|+++++..+.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg---~~v~~vs~DG~~~~~fp~~~~~~g~~-~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG---FSVIPVSLDGRPIPSFPNPRPDPGQA-KRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC---CEEEEEecCCCCCcCCCCCCCCHHHH-HHcCCCcCCEEEEEECCC
Confidence 36788999999999999999999999999994 67777777621 27888 899999999999998776
Q ss_pred cceeecCCCCCCHHHHHHHH
Q 042284 407 AKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 407 ~~~~~~~gg~~~~~~l~~~i 426 (430)
.......-|..+.++|.+-|
T Consensus 195 ~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CeEEEEeeecCCHHHHHHhh
Confidence 44444444579999987643
No 175
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.47 E-value=5.9e-07 Score=78.26 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=39.0
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRAD 380 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~ 380 (430)
.+++|+|.|||+||+ |+...|.++++++++++.++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 478999999999999 9999999999999998767999999764
No 176
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.45 E-value=6.3e-07 Score=79.93 Aligned_cols=85 Identities=8% Similarity=-0.033 Sum_probs=61.5
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEE------EEEEcCCC----------------------------
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKV------GKFRADGD---------------------------- 382 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~------~~Vd~~~~---------------------------- 382 (430)
.+|+++|.|||.||++|+...|.+++++++ ++.+ ..||.++.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 589999999999999999999999999543 2444 55555531
Q ss_pred chHHHHHhCCCCCCCEE-EEEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 383 HKEFAKQKLQLVSFPTI-LFFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 383 ~~~l~~~~~~V~~~Ptl-~~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
+..+. ..|++.++|+. ++++..+++...+.| ..+.+++.+++.
T Consensus 134 ~g~v~-~~~gv~~~P~T~fVIDk~GkVv~~~~G-~l~~ee~e~~~~ 177 (184)
T TIGR01626 134 KGAVK-NAWQLNSEDSAIIVLDKTGKVKFVKEG-ALSDSDIQTVIS 177 (184)
T ss_pred cchHH-HhcCCCCCCceEEEECCCCcEEEEEeC-CCCHHHHHHHHH
Confidence 02345 68899999887 677665554556666 677777766543
No 177
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.44 E-value=9.3e-07 Score=66.28 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=53.0
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchH----HHHHhCCCCCCCEEEEEeCCCcceeecCCCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKE----FAKQKLQLVSFPTILFFPKHSAKPVKYPSEKR 417 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~----l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~ 417 (430)
+..|+++||++|+.+.+.+++. ++.+..+|++++ +. +. +.+++.++|++++. |+ . ..| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~-~~~~~~~~-~~~~~~~vP~~~~~--~~--~--~~g--~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-------GIAFEEIDVEKD-SAAREEVL-KVLGQRGVPVIVIG--HK--I--IVG--F 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------CCeEEEEeccCC-HHHHHHHH-HHhCCCcccEEEEC--CE--E--Eee--C
Confidence 4679999999999999887652 478889999877 43 45 67899999999874 43 2 334 5
Q ss_pred CHHHHHHHHH
Q 042284 418 DVDSLMAFVN 427 (430)
Q Consensus 418 ~~~~l~~~i~ 427 (430)
+.++|.++|+
T Consensus 65 ~~~~i~~~i~ 74 (74)
T TIGR02196 65 DPEKLDQLLE 74 (74)
T ss_pred CHHHHHHHhC
Confidence 7788888874
No 178
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.43 E-value=1.2e-06 Score=79.36 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=82.5
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHH------HHHHHHHHHHHhCCcEEEEccCc--hHHHHHHHhc
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPE------THQFFDTVEKHYGIRIEYTFPNA--VEVQALVRTK 145 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpe------t~~~~~~~~~~~gl~i~~~~p~~--~~~~~~~~~~ 145 (430)
+++++|||||||+++ +++.+.+.++..++++++..... -.+.+++.++.+|+++.++.-.. ..+.+.+.
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~-- 78 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLK-- 78 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHH--
Confidence 478999999999876 77778787788788776644322 46788999999999987664211 11110000
Q ss_pred CCCCCCccchhhhhhhhchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccccchHH
Q 042284 146 GLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQD 225 (430)
Q Consensus 146 g~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~d 225 (430)
..+..+.+. ++++++.|...+|- +|.....+-.. -++.-+.||..-..++
T Consensus 79 ----------------~~l~~~~~~--g~~~vv~G~i~sd~--~~~~~e~~~~~----------~gl~~~~PLW~~~~~~ 128 (194)
T cd01994 79 ----------------ELLRKLKEE--GVDAVVFGAILSEY--QRTRVERVCER----------LGLEPLAPLWGRDQEE 128 (194)
T ss_pred ----------------HHHHHHHHc--CCCEEEECccccHH--HHHHHHHHHHH----------cCCEEEecccCCCHHH
Confidence 011111111 67899999999886 45443322111 2567899999988888
Q ss_pred HHHHHHHcCC
Q 042284 226 IWNFLRAMNI 235 (430)
Q Consensus 226 Vw~yi~~~~l 235 (430)
+..-+...|+
T Consensus 129 ll~e~~~~g~ 138 (194)
T cd01994 129 LLREMIEAGF 138 (194)
T ss_pred HHHHHHHcCC
Confidence 7765555443
No 179
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.40 E-value=1.4e-06 Score=62.29 Aligned_cols=61 Identities=36% Similarity=0.720 Sum_probs=50.9
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHH--HhCCCCCCCEEEEEeCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK--QKLQLVSFPTILFFPKH 405 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~--~~~~V~~~Ptl~~~~~g 405 (430)
++.|+++||++|+.+.+.+.++ +... .++.+..+|++.. ..... ..+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN-KGVKFEAVDVDED-PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC-CCcEEEEEEcCCC-hHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3333 3799999999988 56551 27899999999999877
No 180
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.39 E-value=2.7e-06 Score=87.96 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=91.1
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCC-HH-HHHHHHHHHHHhC--Cc--EEEEccCchHHHHHHHhcCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLN-PE-THQFFDTVEKHYG--IR--IEYTFPNAVEVQALVRTKGL 147 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~f-pe-t~~~~~~~~~~~g--l~--i~~~~p~~~~~~~~~~~~g~ 147 (430)
++++.+|||+||+|+ +++.+.+.++..+|+|.|... .+ ..+.+++++++|+ .+ ++++. .......+.. ..
T Consensus 179 k~lvllSGGiDS~va~~~~~krG~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~--~~~~~~~i~~-~~ 255 (482)
T PRK01269 179 DVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVD--FEPVVGEILE-KV 255 (482)
T ss_pred eEEEEEcCCchHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEe--cHHHHHHHHh-cC
Confidence 699999999999876 777788888999999999653 22 5777888888886 33 44432 2221111111 11
Q ss_pred CCCCccchhhhhhhhchHHH---HHHHh--cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccccc
Q 042284 148 FSFYEDGHQECCRIRKVRPL---KRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVK 222 (430)
Q Consensus 148 ~~~~~~~~~~cc~~~K~~pl---~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt 222 (430)
....||.++|+.-| ..+.. ++++++||...+|-. .-...+....... .+..-+.||+.++
T Consensus 256 ------~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dva-sqtl~nl~~~~~~--------~~~~v~rPLi~~d 320 (482)
T PRK01269 256 ------DDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVS-SQTLTNLRLIDNV--------TDTLILRPLIAMD 320 (482)
T ss_pred ------CCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhh-hHHHHHHHhhhhh--------cCCceecCCcCCC
Confidence 12346656665444 22222 678999999999842 2111111111110 1234459999999
Q ss_pred hHHHHHHHHHcCC
Q 042284 223 GQDIWNFLRAMNI 235 (430)
Q Consensus 223 ~~dVw~yi~~~~l 235 (430)
+.||..|.+..|+
T Consensus 321 K~EIi~~a~~ig~ 333 (482)
T PRK01269 321 KEDIIDLAREIGT 333 (482)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999997
No 181
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.33 E-value=1.2e-06 Score=74.93 Aligned_cols=70 Identities=16% Similarity=0.345 Sum_probs=56.5
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCC--CeEEEEEEcCCCc------------------------hHHHHHh
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM--GVKVGKFRADGDH------------------------KEFAKQK 390 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~--~v~~~~Vd~~~~~------------------------~~l~~~~ 390 (430)
.+|.|.++|.|.||++|+.|.|.+.++.++++.. .+.++-|+-|.+. .+++ ++
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~-~k 110 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS-EK 110 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH-Hh
Confidence 5799999999999999999999999999888762 3666666655431 4567 79
Q ss_pred CCCCCCCEEEEEeCCCc
Q 042284 391 LQLVSFPTILFFPKHSA 407 (430)
Q Consensus 391 ~~V~~~Ptl~~~~~g~~ 407 (430)
|.|.++|++++.+..+.
T Consensus 111 y~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGT 127 (157)
T ss_pred cccCcCceeEEecCCCC
Confidence 99999999999876553
No 182
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.31 E-value=5.8e-06 Score=78.85 Aligned_cols=103 Identities=21% Similarity=0.363 Sum_probs=74.3
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHH------HHHHHHH-HcCCCeEEEEEEcCCCchHHHHHh
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGS------YIELAEQ-LEGMGVKVGKFRADGDHKEFAKQK 390 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~------~~~la~~-~~~~~v~~~~Vd~~~~~~~l~~~~ 390 (430)
..|++|+..||+++++ +.+..+|+|+.|-- .-+..... +-+|+.+ +...++.|+.||..++ ..++ ++
T Consensus 34 DRVi~LneKNfk~~lK---kyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd-~klA-KK 107 (383)
T PF01216_consen 34 DRVIDLNEKNFKRALK---KYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD-AKLA-KK 107 (383)
T ss_dssp --CEEE-TTTHHHHHH---H-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT-HHHH-HH
T ss_pred cceEEcchhHHHHHHH---hhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH-HHHH-Hh
Confidence 6899999999999987 78888899998863 33333222 2334444 4445899999999999 9999 99
Q ss_pred CCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 391 LQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 391 ~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+++...+++.+|++|. .+.|.| .++++-|+.||-.+
T Consensus 108 Lgv~E~~SiyVfkd~~--~IEydG-~~saDtLVeFl~dl 143 (383)
T PF01216_consen 108 LGVEEEGSIYVFKDGE--VIEYDG-ERSADTLVEFLLDL 143 (383)
T ss_dssp HT--STTEEEEEETTE--EEEE-S---SHHHHHHHHHHH
T ss_pred cCccccCcEEEEECCc--EEEecC-ccCHHHHHHHHHHh
Confidence 9999999999999999 899988 79999999999754
No 183
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=3.1e-06 Score=71.91 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=71.0
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCch---HHHHHHHhcCCCCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAV---EVQALVRTKGLFSF 150 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~---~~~~~~~~~g~~~~ 150 (430)
++.+.|||||||.+. .++.+.+.++..++++-|..- +.+++++.++.+|++..+++-+.. .-.+++-+.|.|.
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d--~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg~P~- 78 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVLD--SWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDGYPR- 78 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhCCCcEEEEEEecccc--chhhHHHHHHHhCCCcceeccCHHHHHHHHHHHHhcCCCc-
Confidence 378999999999887 567778899999999999764 568889999999999988765542 2334455666532
Q ss_pred CccchhhhhhhhchHHHHHHH-hcCceEEEeeeccCC
Q 042284 151 YEDGHQECCRIRKVRPLKRAL-KGLRAWITGQRKDQS 186 (430)
Q Consensus 151 ~~~~~~~cc~~~K~~pl~~~~-~~~~~~i~G~R~~Es 186 (430)
+.-. ++ -...+.... +.++.+..|+|||+-
T Consensus 79 --~aIq---~i-H~~alE~~A~r~~~~iaDGTRRDDr 109 (198)
T COG2117 79 --NAIQ---YI-HEMALEALASREVDRIADGTRRDDR 109 (198)
T ss_pred --hHHH---HH-HHHHHHHHHHHHHHHHcCCCccccc
Confidence 1111 11 112222222 257789999999984
No 184
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.27 E-value=5e-06 Score=69.29 Aligned_cols=70 Identities=23% Similarity=0.522 Sum_probs=59.7
Q ss_pred CCCcEEEEEeCC-CCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc--------------------hHHHHHhCCCC-
Q 042284 337 REDPWLIVLYAP-WCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH--------------------KEFAKQKLQLV- 394 (430)
Q Consensus 337 ~~k~vlV~Fya~-wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~--------------------~~l~~~~~~V~- 394 (430)
.+++++|.||+. ||++|+...+.++++.++++..++.++.|..+..+ ..+. +.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELA-KAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHH-HHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHH-HHcCCcc
Confidence 468999999999 99999999999999999998767999999876431 3567 788888
Q ss_pred -----CCCEEEEEeCCCc
Q 042284 395 -----SFPTILFFPKHSA 407 (430)
Q Consensus 395 -----~~Ptl~~~~~g~~ 407 (430)
.+|+++++++++.
T Consensus 103 ~~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGK 120 (124)
T ss_dssp TTTSEESEEEEEEETTSB
T ss_pred ccCCceEeEEEEECCCCE
Confidence 8999999988774
No 185
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.26 E-value=5.1e-06 Score=63.02 Aligned_cols=70 Identities=19% Similarity=0.341 Sum_probs=49.1
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHh-----CCCCCCCEEEEEeCCCcceeecCCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQK-----LQLVSFPTILFFPKHSAKPVKYPSEK 416 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~-----~~V~~~Ptl~~~~~g~~~~~~~~gg~ 416 (430)
++.|+++||++|+.+++.++++ ++.+-.+|++++ +... .. +++.++|++ ++.+|. ... .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~-~~~~-~~~~~~~~~~~~vP~i-~~~~g~--~l~----~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEED-EGAA-DRVVSVNNGNMTVPTV-KFADGS--FLT----N 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCC-HhHH-HHHHHHhCCCceeCEE-EECCCe--Eec----C
Confidence 5679999999999999988665 245567888877 5544 34 488999997 566665 222 2
Q ss_pred CCHHHHHHHHH
Q 042284 417 RDVDSLMAFVN 427 (430)
Q Consensus 417 ~~~~~l~~~i~ 427 (430)
.+..++.+.|+
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 34566766654
No 186
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.25 E-value=4.5e-06 Score=71.25 Aligned_cols=87 Identities=11% Similarity=0.146 Sum_probs=64.6
Q ss_pred CCCcEEEEEe-CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC--------------------chHHHHHhCCCCC
Q 042284 337 REDPWLIVLY-APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD--------------------HKEFAKQKLQLVS 395 (430)
Q Consensus 337 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~--------------------~~~l~~~~~~V~~ 395 (430)
.+++++|.|| +.||+.|....+.+.++.+.+.++++.++.|..+.. +..+. +.|++..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLA-KAYGVWG 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHH-HHhCCcc
Confidence 3789999999 589999999999999999998765688888866432 14566 7889888
Q ss_pred C---------CEEEEEeCCCcceeecCCCCCCHHHHHHH
Q 042284 396 F---------PTILFFPKHSAKPVKYPSEKRDVDSLMAF 425 (430)
Q Consensus 396 ~---------Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~ 425 (430)
. |++++++..+++...+.| ....+++.+.
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g-~~~~~~~~~~ 138 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRK-VKPKGHAEEV 138 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEec-CCccchHHHH
Confidence 8 899999765544555555 4455555443
No 187
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.24 E-value=2.7e-06 Score=73.96 Aligned_cols=79 Identities=19% Similarity=0.444 Sum_probs=54.7
Q ss_pred cccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHH-H--HHHHHHHcCCCeEEEEEEcCCCchHHHHHhC--------
Q 042284 323 FRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGS-Y--IELAEQLEGMGVKVGKFRADGDHKEFAKQKL-------- 391 (430)
Q Consensus 323 lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~-------- 391 (430)
.+++.|+...+ .+|+++|.++.+||+.|+.|... | .++++.+.. ++.-++||.++. +++. ..|
T Consensus 25 w~~ea~~~Ak~---e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~-Pdid-~~y~~~~~~~~ 98 (163)
T PF03190_consen 25 WGEEALEKAKK---ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREER-PDID-KIYMNAVQAMS 98 (163)
T ss_dssp SSHHHHHHHHH---HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT--HHHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHh---cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccC-ccHH-HHHHHHHHHhc
Confidence 34455666544 89999999999999999999874 4 677888776 689999999999 9988 776
Q ss_pred CCCCCCEEEEEeCCCc
Q 042284 392 QLVSFPTILFFPKHSA 407 (430)
Q Consensus 392 ~V~~~Ptl~~~~~g~~ 407 (430)
+..++|+.+|..+...
T Consensus 99 ~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 99 GSGGWPLTVFLTPDGK 114 (163)
T ss_dssp S---SSEEEEE-TTS-
T ss_pred CCCCCCceEEECCCCC
Confidence 7889999999876554
No 188
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.23 E-value=8.3e-06 Score=80.31 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=86.9
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCC---------HHHHHHHHHHHHHhCCcEEEEccCchHHHH----
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLN---------PETHQFFDTVEKHYGIRIEYTFPNAVEVQA---- 140 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~f---------pet~~~~~~~~~~~gl~i~~~~p~~~~~~~---- 140 (430)
+|+|+.|||-||+|. .|+.+.+.++.-+|+.+...- ++-++.++++++++|++++++.-... +++
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~-f~~~Vi~ 80 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREE-FWEEVIE 80 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHH-HHHHTHH
T ss_pred eEEEEccCCHHHHHHHHHHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHH-HHHHHHH
Confidence 599999999999776 788889999888888777552 35678899999999999988743322 222
Q ss_pred -HHH--hcCCCCCCccchhhhhhhhchHHHHHHHhc---CceEEEeeeccCCc---ccccCCCeeeecCC----CCcc-c
Q 042284 141 -LVR--TKGLFSFYEDGHQECCRIRKVRPLKRALKG---LRAWITGQRKDQSP---GTRAEIPVVQIDTS----FEGI-D 206 (430)
Q Consensus 141 -~~~--~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~---~~~~i~G~R~~Es~---~~R~~~~~~~~d~~----~~~~-~ 206 (430)
++. ..|.-+ ++.-.|....|...|.+.+.. ++.++||+=+.=.. ..+..+.. ..|+. |.=. .
T Consensus 81 ~f~~~Y~~G~TP---NPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r-~~D~~KDQSYfL~~l 156 (356)
T PF03054_consen 81 PFLDEYRKGRTP---NPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLR-GADPKKDQSYFLSRL 156 (356)
T ss_dssp HHHHHHHTT-------HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE--SSTTC--GGGGTT-
T ss_pred HHHHHHhcCCCC---ChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEe-cCCCCCCceEEEEec
Confidence 222 233211 122356677999988888775 57899997221110 01111111 11211 1000 0
Q ss_pred CCCCCeEEEecccccchHHHHHHHHHcCCC
Q 042284 207 GGKGSLVKWNPLANVKGQDIWNFLRAMNIP 236 (430)
Q Consensus 207 ~~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp 236 (430)
...--..-+.||-++++.||....++.|||
T Consensus 157 ~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~ 186 (356)
T PF03054_consen 157 PQEQLSRLIFPLGELTKEEVREIAREAGLP 186 (356)
T ss_dssp -HHHHCCEE-TCCCS-HHHHHHHHHHCT-T
T ss_pred CHHHHHhhcCCCCCCCHHHHHHHHHhcCCc
Confidence 000001247899999999999999999998
No 189
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.23 E-value=9.7e-06 Score=73.18 Aligned_cols=92 Identities=13% Similarity=0.187 Sum_probs=67.1
Q ss_pred CCCcEEEEEe-CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC------------------------chHHHHHhC
Q 042284 337 REDPWLIVLY-APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD------------------------HKEFAKQKL 391 (430)
Q Consensus 337 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~------------------------~~~l~~~~~ 391 (430)
.++++||.|| +.||++|....|.|.++.+++.+.++.++.|.++.. +..++ +.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a-~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLT-RNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHH-HHh
Confidence 4679999999 999999999999999999998765677777765531 13566 788
Q ss_pred CCC------CCCEEEEEeCCCcceeec-C--CCCCCHHHHHHHHHHh
Q 042284 392 QLV------SFPTILFFPKHSAKPVKY-P--SEKRDVDSLMAFVNAL 429 (430)
Q Consensus 392 ~V~------~~Ptl~~~~~g~~~~~~~-~--gg~~~~~~l~~~i~~~ 429 (430)
+|. ..|+.++++..+.+...+ . ...++.+++.+.|+.+
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 886 459999996444322222 1 1235888998888765
No 190
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.22 E-value=3.7e-06 Score=78.85 Aligned_cols=163 Identities=15% Similarity=0.230 Sum_probs=93.5
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHhc-C-CCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHH
Q 042284 63 EIMDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKLT-G-RPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEV 138 (430)
Q Consensus 63 ~~i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~~-~-~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~ 138 (430)
..|+..+++.+ +.++|++|||.||+|+ .|+.++ + .++..++++++...+++.+-++.+++.+|+++.++.-... +
T Consensus 7 ~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~-~ 85 (242)
T PF02540_consen 7 DFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDPI-F 85 (242)
T ss_dssp HHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHHH-H
T ss_pred HHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccchHHH-H
Confidence 45555666655 5699999999999776 666665 3 4578899999999999999999999999999877743321 2
Q ss_pred HHHHHhcCCCCCCccchhhh-hhhhchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEec
Q 042284 139 QALVRTKGLFSFYEDGHQEC-CRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNP 217 (430)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~c-c~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~P 217 (430)
..+...-... ........ +...+..-+.........++.|+ +++... ....-..| ++ +..-+.|
T Consensus 86 ~~~~~~~~~~--~~~~~~~Ni~aR~Rm~~ly~~a~~~~~lVlgT------~N~sE~-~~Gy~T~~----GD--~~~d~~P 150 (242)
T PF02540_consen 86 DAFLKSLEPA--DDDLARGNIQARIRMTTLYALANKYNYLVLGT------GNKSEL-LLGYFTKY----GD--GAGDIAP 150 (242)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTEEEBE--------CHHHH-HHTCSHTT----TT--TSSSBET
T ss_pred HHHhhhhccc--hhhhhhhhHHHHHHHHHHHHHhcccceEEecC------CcHHHh-hcCccccc----Cc--cccccee
Confidence 2221100000 00000111 11111122222222335566564 133221 11111112 11 1224799
Q ss_pred ccccchHHHHHHHHHcCCCCcccc
Q 042284 218 LANVKGQDIWNFLRAMNIPINSLH 241 (430)
Q Consensus 218 i~dWt~~dVw~yi~~~~lp~~pLY 241 (430)
|.+..+.||+...+..|+|-.-+.
T Consensus 151 i~~L~K~eV~~la~~l~ip~~ii~ 174 (242)
T PF02540_consen 151 IADLYKTEVRELARYLGIPEEIIE 174 (242)
T ss_dssp TTTS-HHHHHHHHHHTTCGHHHHC
T ss_pred eCCcCHHHHHHHHHHHhhHHHHhc
Confidence 999999999999999998754443
No 191
>PTZ00323 NAD+ synthase; Provisional
Probab=98.21 E-value=2.8e-05 Score=74.72 Aligned_cols=160 Identities=13% Similarity=0.129 Sum_probs=90.3
Q ss_pred HHHHHHHHcC-CcEEEEechhHHHHHH-HHHHhc-CC-C---cEEEEecCCCC-CHHHHHHHHHHHHHhCCcEEEEccCc
Q 042284 64 IMDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKLT-GR-P---FRVFSLDTGRL-NPETHQFFDTVEKHYGIRIEYTFPNA 135 (430)
Q Consensus 64 ~i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~~-~~-~---i~vi~~DTg~~-fpet~~~~~~~~~~~gl~i~~~~p~~ 135 (430)
.|+..+++.+ +.++|++|||-||+++ .|+.++ +. . ..++.+..... -+.+.+-++++++.+|++++++.-..
T Consensus 36 ~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi~~ 115 (294)
T PTZ00323 36 KLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQTE 115 (294)
T ss_pred HHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 3444444543 5699999999999776 566654 22 2 34555555543 67899999999999999987774433
Q ss_pred h--HHHHHHHhc-CCCC--CCccchhhhhhhhchHHHHHHH--hcCceEEEee-eccCCcccccCCCeeeecCCCCcccC
Q 042284 136 V--EVQALVRTK-GLFS--FYEDGHQECCRIRKVRPLKRAL--KGLRAWITGQ-RKDQSPGTRAEIPVVQIDTSFEGIDG 207 (430)
Q Consensus 136 ~--~~~~~~~~~-g~~~--~~~~~~~~cc~~~K~~pl~~~~--~~~~~~i~G~-R~~Es~~~R~~~~~~~~d~~~~~~~~ 207 (430)
. .+...+... +... +...+.+...+..-..-+.... .+...++.|+ .++|-. . -+......|
T Consensus 116 l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~-~-~Gy~t~~GD-------- 185 (294)
T PTZ00323 116 IHTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDG-Y-LGYFCKAGD-------- 185 (294)
T ss_pred HHHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhh-H-hchHhhcCC--------
Confidence 2 122222111 1000 0000011111110011121112 1445889999 888831 1 122211112
Q ss_pred CCCCeEEEecccccchHHHHHHHHHcCCC
Q 042284 208 GKGSLVKWNPLANVKGQDIWNFLRAMNIP 236 (430)
Q Consensus 208 ~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp 236 (430)
+..-+.||+++++.||+...+..|+|
T Consensus 186 ---g~~d~~pia~L~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 186 ---GVVDVQLISDLHKSEVFLVARELGVP 211 (294)
T ss_pred ---CCcCchhhcCCcHHHHHHHHHHcCCC
Confidence 45678999999999999999988875
No 192
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.21 E-value=2.6e-05 Score=69.72 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=86.0
Q ss_pred CCceEcccchHHHHHHhcCCCCc-EEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCC--
Q 042284 318 QKLVSFRRTGIENLARLQNREDP-WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLV-- 394 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~-vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~-- 394 (430)
+.|.++|.+|+..+.. .+.+ +++.|..........+...++.+++.+++ ++.|+.+|++.. +.++ +.+++.
T Consensus 77 P~v~~~t~~n~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~-~~~~-~~~~i~~~ 150 (184)
T PF13848_consen 77 PLVPELTPENFEKLFS---SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDF-PRLL-KYFGIDED 150 (184)
T ss_dssp TSCEEESTTHHHHHHS---TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTT-HHHH-HHTTTTTS
T ss_pred ccccccchhhHHHHhc---CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHh-HHHH-HHcCCCCc
Confidence 5799999999999875 5555 78888877788899999999999999988 899999999988 8999 899998
Q ss_pred CCCEEEEEeCCCcc-eeecCCCCCCHHHHHHHHHH
Q 042284 395 SFPTILFFPKHSAK-PVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 395 ~~Ptl~~~~~g~~~-~~~~~gg~~~~~~l~~~i~~ 428 (430)
.+|++++++..... .....+ ..+.+.|.+||+.
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~-~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEG-EITPESIEKFLND 184 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SS-CGCHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCC-CCCHHHHHHHhcC
Confidence 89999999844322 222344 7999999999974
No 193
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.20 E-value=1.1e-05 Score=72.51 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=37.3
Q ss_pred CCCcE-EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcC
Q 042284 337 REDPW-LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRAD 380 (430)
Q Consensus 337 ~~k~v-lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~ 380 (430)
.++++ |+.|||+||++|+...|.++++.++|++.++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 45654 456699999999999999999999998767999999864
No 194
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.20 E-value=9.4e-06 Score=67.02 Aligned_cols=97 Identities=18% Similarity=0.315 Sum_probs=59.9
Q ss_pred chHHHHHHh-cCCCCcEEEEEeC-------CCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC------chHHHHH--
Q 042284 326 TGIENLARL-QNREDPWLIVLYA-------PWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD------HKEFAKQ-- 389 (430)
Q Consensus 326 ~~f~~~i~~-~~~~k~vlV~Fya-------~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~------~~~l~~~-- 389 (430)
++|.++++. .+++++++|+|++ +||+.|....|.+++.-...+. +..|+.|.+... +..+. +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR-~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFR-TDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHH-H--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCce-Ecc
Confidence 455666553 2456899999986 5999999999999998877665 688888876432 12444 3
Q ss_pred hCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 390 KLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 390 ~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
+++|+++||++-+..+++ +..-.- .+.+-+..|++
T Consensus 84 ~~~l~~IPTLi~~~~~~r-L~e~e~--~~~~lv~~~~e 118 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGER-LVEEEC--LNEDLVEMFFE 118 (119)
T ss_dssp CC---SSSEEEECTSS-E-EEHHHH--H-HHHHHHHHH
T ss_pred eeeeeecceEEEECCCCc-cchhhh--ccHHHHHHHhc
Confidence 599999999999987753 332221 34455555554
No 195
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.19 E-value=1e-05 Score=72.03 Aligned_cols=92 Identities=12% Similarity=0.214 Sum_probs=67.3
Q ss_pred CCCcEEEEEe-CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---------------------------chHHHH
Q 042284 337 REDPWLIVLY-APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---------------------------HKEFAK 388 (430)
Q Consensus 337 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---------------------------~~~l~~ 388 (430)
.++++||.|| +.||++|....+.++++++++.+.++.++.|..+.. +..++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~- 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS- 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH-
Confidence 4689999999 899999999999999999999765688887766432 12455
Q ss_pred HhCCCC------CCCEEEEEeCCCcceeecCC---CCCCHHHHHHHHHHh
Q 042284 389 QKLQLV------SFPTILFFPKHSAKPVKYPS---EKRDVDSLMAFVNAL 429 (430)
Q Consensus 389 ~~~~V~------~~Ptl~~~~~g~~~~~~~~g---g~~~~~~l~~~i~~~ 429 (430)
+.|++. ..|+++++++.+.....+.+ ...+.+++.+.|+++
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 677876 57899999755543333322 135678888888764
No 196
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.17 E-value=1.8e-05 Score=74.24 Aligned_cols=87 Identities=20% Similarity=0.176 Sum_probs=69.6
Q ss_pred CCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC----------chHHHHHhCCCCCCCEEEEEeCCCc
Q 042284 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD----------HKEFAKQKLQLVSFPTILFFPKHSA 407 (430)
Q Consensus 338 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~----------~~~l~~~~~~V~~~Ptl~~~~~g~~ 407 (430)
++.-||+||...|++|+.+.|+++.+++.|+ +.+..|++|.. +..++ ++++|..+|++++...+..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIPISVDGTLIPGLPNSRSDSGQA-QHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCccCChHHH-HhcCCccCceEEEEECCCC
Confidence 4588999999999999999999999999995 67777776643 14577 8999999999999987755
Q ss_pred ceeecCCCCCCHHHHHHHHHH
Q 042284 408 KPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 408 ~~~~~~gg~~~~~~l~~~i~~ 428 (430)
......-|..+.++|.+-|-.
T Consensus 226 ~~~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 226 KMSPLAYGFISQDELKERILN 246 (256)
T ss_pred cEEEEeeccCCHHHHHHHHHH
Confidence 444444457999999876643
No 197
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.17 E-value=7.9e-06 Score=66.19 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=34.5
Q ss_pred EEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCC--CHHHHHHHHH
Q 042284 76 IAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRL--NPETHQFFDT 119 (430)
Q Consensus 76 i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~--fpet~~~~~~ 119 (430)
++|++|||+||+++ +++.+.+.++.++|+|.|.. .++..+++++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTVDHGISPRLEDAKEIAKE 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCCCEEEEEEcCCCcccHHHHHHHHHH
Confidence 57999999999776 77777777899999999986 3555555544
No 198
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.16 E-value=9.5e-06 Score=73.76 Aligned_cols=170 Identities=15% Similarity=0.212 Sum_probs=101.4
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCCCc-
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYE- 152 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~- 152 (430)
+.+|-||||-||+++ .++.+.+..+..++.|-|.-..--++.++++++++|++.+++.-+.. .+ + .|......
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~--~~-~--~~saLtd~~ 78 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLL--GE-I--GGSALTDDS 78 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcCCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHH--hh-c--CCCcCcCCC
Confidence 578999999999776 77888888899999999987798999999999999999887743221 11 1 01100000
Q ss_pred -----cc------hhhhhhhh-----chHHHHHHHhcCceEEEeeeccCCcccccCCCeeeec--CCCCc--ccCCCCCe
Q 042284 153 -----DG------HQECCRIR-----KVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQID--TSFEG--IDGGKGSL 212 (430)
Q Consensus 153 -----~~------~~~cc~~~-----K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d--~~~~~--~~~~~~~~ 212 (430)
.. +...--.| =+.-......+.+.+++|+...|.. . .|-.... ..++. ..+...++
T Consensus 79 ~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~s-g---YPDcrpefi~a~~~~~~l~~~~~~ 154 (222)
T COG0603 79 IDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFS-G---YPDCRPEFIEALNEALNLGTEKGV 154 (222)
T ss_pred ccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccC-C---CCCCCHHHHHHHHHHHHhhccCCc
Confidence 00 00000001 1111111112567899999999863 2 2211000 00000 00001223
Q ss_pred E-EEecccccchHHHHHHHHHcCCCCccccccCCccc---CCcCCC
Q 042284 213 V-KWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISI---GCEPCT 254 (430)
Q Consensus 213 ~-~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~si---GC~~Ct 254 (430)
. -..||.++++.++|..-.+.|+|+..=+.. |... +|--|.
T Consensus 155 ~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~SC-Y~g~~~~~CG~C~ 199 (222)
T COG0603 155 RIIHAPLMELTKAEIVKLADELGVPLELTWSC-YNGGEGDHCGECE 199 (222)
T ss_pred cEEeCCeeeccHHHHHHHHHHhCCcchhceEE-eCCCCCCCCCCCH
Confidence 3 378999999999999999999998766543 2222 555553
No 199
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.15 E-value=1.9e-05 Score=68.76 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCCcEEEEEeCC-CCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC--------------------chHHHHHhCCCCC
Q 042284 337 REDPWLIVLYAP-WCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD--------------------HKEFAKQKLQLVS 395 (430)
Q Consensus 337 ~~k~vlV~Fya~-wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~--------------------~~~l~~~~~~V~~ 395 (430)
.++++||.||+. ||+.|....+.+.++.+.++++++.++.|+.+.. +..+. +.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVA-EQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHH-HHhCCCc
Confidence 468999999976 6888999999999999999876788888876532 13566 7888765
Q ss_pred C------------CEEEEEeCCCcceeecCC
Q 042284 396 F------------PTILFFPKHSAKPVKYPS 414 (430)
Q Consensus 396 ~------------Ptl~~~~~g~~~~~~~~g 414 (430)
. |+.++++..+.+...+.|
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 4 677788644444445554
No 200
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.09 E-value=2.1e-05 Score=67.67 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=36.3
Q ss_pred CCcEEEE-EeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC
Q 042284 338 EDPWLIV-LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD 382 (430)
Q Consensus 338 ~k~vlV~-Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~ 382 (430)
+++++|. |+++||++|+...|.+.++.+++...++.++.|+.+..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 3455444 56999999999999999999999765799999987654
No 201
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=7.7e-05 Score=72.65 Aligned_cols=168 Identities=14% Similarity=0.056 Sum_probs=104.3
Q ss_pred CcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCC-------CCHHHHHHHHHHHHHhCCcEEEEccCchH----HHHH
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGR-------LNPETHQFFDTVEKHYGIRIEYTFPNAVE----VQAL 141 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~-------~fpet~~~~~~~~~~~gl~i~~~~p~~~~----~~~~ 141 (430)
.+++|++|||-||.|. .|+.+.+.++..+|+-... ..++-++-++++++.+|+++.++.-...- +..+
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f 83 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYF 83 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHH
Confidence 4699999999998665 7888889998888776655 34566778999999999999887543321 1223
Q ss_pred HHhcCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcc-cccCCCe-e--eecCCCCcccCCCCC-eEE
Q 042284 142 VRTKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPG-TRAEIPV-V--QIDTSFEGIDGGKGS-LVK 214 (430)
Q Consensus 142 ~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~-~R~~~~~-~--~~d~~~~~~~~~~~~-~~~ 214 (430)
+.+++.-..| .+.-.|....|...+...+. +.+.++||+=+-..+. .+..+.. . ..|.+|.-....... -..
T Consensus 84 ~~~Y~~G~TP-NPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~~~ql~~~ 162 (356)
T COG0482 84 LAEYKAGKTP-NPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALSQEQLERL 162 (356)
T ss_pred HHHHhCCCCC-CcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccccCCCcccchhheecccCHHHHhhc
Confidence 3444322111 12234668899999888877 5578899864333210 0111100 0 011111100000000 123
Q ss_pred EecccccchHHHHHHHHHcCCCCccccc
Q 042284 215 WNPLANVKGQDIWNFLRAMNIPINSLHS 242 (430)
Q Consensus 215 ~~Pi~dWt~~dVw~yi~~~~lp~~pLY~ 242 (430)
+.||-++++.+|....++.|||...-=|
T Consensus 163 lFPlG~l~K~evR~iA~~~gL~~a~Kkd 190 (356)
T COG0482 163 LFPLGDLEKLEVRPIAAEKGLPTAKKKD 190 (356)
T ss_pred cccCCCCCHHHHHHHHHHcCCCccCccc
Confidence 6899999999999999999998765433
No 202
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.08 E-value=5.4e-06 Score=72.68 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=71.0
Q ss_pred CceEcc-cchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCC
Q 042284 319 KLVSFR-RTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397 (430)
Q Consensus 319 ~v~~lt-~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~P 397 (430)
...++. +..|-+... ....|++.||-|.-..|+-|...++.||+.+-+ ..|++||++.. |-++ .+++|+-+|
T Consensus 67 ~y~ev~~Ekdf~~~~~---kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae~~-PFlv-~kL~IkVLP 139 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVK---KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAEKA-PFLV-TKLNIKVLP 139 (211)
T ss_pred eEEEeccHHHHHHHhh---cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecccC-ceee-eeeeeeEee
Confidence 344444 455555544 678899999999999999999999999999987 89999999999 9999 999999999
Q ss_pred EEEEEeCCCc
Q 042284 398 TILFFPKHSA 407 (430)
Q Consensus 398 tl~~~~~g~~ 407 (430)
++++|++|..
T Consensus 140 ~v~l~k~g~~ 149 (211)
T KOG1672|consen 140 TVALFKNGKT 149 (211)
T ss_pred eEEEEEcCEE
Confidence 9999999985
No 203
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.07 E-value=4.4e-05 Score=63.19 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=70.7
Q ss_pred hHHHHHHh-cCCCCcEEEEEeCC----CCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc-hHHHHHhCCCCCCCEEE
Q 042284 327 GIENLARL-QNREDPWLIVLYAP----WCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH-KEFAKQKLQLVSFPTIL 400 (430)
Q Consensus 327 ~f~~~i~~-~~~~k~vlV~Fya~----wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~-~~l~~~~~~V~~~Ptl~ 400 (430)
+|++.++. .++.|.++|+|+++ ||..|+.... =+++.+.+.+ ++.+...|++..+ ..++ ..+++.++|++.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~-~fv~w~~dv~~~eg~~la-~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT-RMLFWACSVAKPEGYRVS-QALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc-CEEEEEEecCChHHHHHH-HHhCCCCCCEEE
Confidence 44554432 34689999999999 8888865431 1555555655 7899999998652 5678 899999999999
Q ss_pred EEe--CCCc-ceeecCCCCCCHHHHHHHHHHh
Q 042284 401 FFP--KHSA-KPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 401 ~~~--~g~~-~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
++. +++. ......| ..++++|...|+.+
T Consensus 82 ~l~~~~~~~~vv~~i~G-~~~~~~ll~~L~~~ 112 (116)
T cd02991 82 MIMLKDNRMTIVGRLEG-LIQPEDLINRLTFI 112 (116)
T ss_pred EEEecCCceEEEEEEeC-CCCHHHHHHHHHHH
Confidence 993 3332 2334455 89999999988764
No 204
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.06 E-value=4.5e-05 Score=71.22 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=67.8
Q ss_pred CCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC----------chHHHHHhCCCCCCCEEEEEeCCCc
Q 042284 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD----------HKEFAKQKLQLVSFPTILFFPKHSA 407 (430)
Q Consensus 338 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~----------~~~l~~~~~~V~~~Ptl~~~~~g~~ 407 (430)
++.-|++||.+.|++|+.+.|+++.+++.|+ +.+..|++|.. +...+ ++++|..+|+++++..+..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVINPLLPDSRTDQGQA-QRLGVKYFPALMLVDPKSG 218 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCCccChhHH-HhcCCcccceEEEEECCCC
Confidence 4588999999999999999999999999995 56666666531 13466 7899999999999987765
Q ss_pred ceeecCCCCCCHHHHHHHHHH
Q 042284 408 KPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 408 ~~~~~~gg~~~~~~l~~~i~~ 428 (430)
......-|..+.++|.+-|..
T Consensus 219 ~~~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 219 SVRPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred cEEEEeeccCCHHHHHHHHHH
Confidence 444444457999999876643
No 205
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=98.06 E-value=2.9e-05 Score=70.12 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=77.5
Q ss_pred CcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCC-CCHHHHHHHHHHHHHh---C--CcEEEEccCchHHHHHHHhcC
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGR-LNPETHQFFDTVEKHY---G--IRIEYTFPNAVEVQALVRTKG 146 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~-~fpet~~~~~~~~~~~---g--l~i~~~~p~~~~~~~~~~~~g 146 (430)
.++++.+|||.||.|. .++.+.+.++..+|.+++. ..+.+.+.++++.+.+ + .++..+.-+...+...+....
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~krG~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMKRGCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHCBT-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred ceEEEEecCCccHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 4588999999999766 7888889999999998543 2334444455555444 3 345444334433333333222
Q ss_pred CCCCCccchhhhhhhhchHHHHHHHh-----cCceEEEeeeccCCccccc-----CCCeeeecCCCCcccCCCCCeEEEe
Q 042284 147 LFSFYEDGHQECCRIRKVRPLKRALK-----GLRAWITGQRKDQSPGTRA-----EIPVVQIDTSFEGIDGGKGSLVKWN 216 (430)
Q Consensus 147 ~~~~~~~~~~~cc~~~K~~pl~~~~~-----~~~~~i~G~R~~Es~~~R~-----~~~~~~~d~~~~~~~~~~~~~~~~~ 216 (430)
.....|-.+|..-++.+-+ ++++++||- +.++|+ ++..++... +..-++
T Consensus 84 -------~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGE----sLGQvaSQTl~nL~~i~~~~----------~~pIlR 142 (197)
T PF02568_consen 84 -------KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGE----SLGQVASQTLENLRVIESAS----------DLPILR 142 (197)
T ss_dssp --------GGGHHHHHHHHHHHHHHHHHHHTT--EEE--------SSSTTS--HHHHHHHGGG------------S-EE-
T ss_pred -------CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCc----hhHHHHhhhHHHHhhhhccc----------CCceeC
Confidence 2345577777776665553 677899873 333332 333332211 356899
Q ss_pred cccccchHHHHHHHHHcCC
Q 042284 217 PLANVKGQDIWNFLRAMNI 235 (430)
Q Consensus 217 Pi~dWt~~dVw~yi~~~~l 235 (430)
||+.+.++||-+..++-|.
T Consensus 143 PLig~dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 143 PLIGFDKEEIIEIARKIGT 161 (197)
T ss_dssp TTTT--HHHHHHHHHHTT-
T ss_pred CcCCCCHHHHHHHHHHhCc
Confidence 9999999999999999997
No 206
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=2.2e-05 Score=63.47 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=61.9
Q ss_pred chHHHHHHhcCCCCcEEEEEeC--------CCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC------chHHHHHhC
Q 042284 326 TGIENLARLQNREDPWLIVLYA--------PWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD------HKEFAKQKL 391 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya--------~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~------~~~l~~~~~ 391 (430)
++|++.++...+++.++|+|++ +|||.|.+..|.+.+.-+..+. ++.|+.|++.+- +..+. ...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR-~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFR-KDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccc-cCC
Confidence 5677777766566779999997 6999999999999988886666 799999998643 13455 566
Q ss_pred CC-CCCCEEEEEeCCC
Q 042284 392 QL-VSFPTILFFPKHS 406 (430)
Q Consensus 392 ~V-~~~Ptl~~~~~g~ 406 (430)
++ .++||++=|+++.
T Consensus 91 ~~lt~vPTLlrw~~~~ 106 (128)
T KOG3425|consen 91 GILTAVPTLLRWKRQP 106 (128)
T ss_pred CceeecceeeEEcCcc
Confidence 66 8999999998633
No 207
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.04 E-value=0.00017 Score=58.96 Aligned_cols=104 Identities=18% Similarity=0.311 Sum_probs=77.5
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHH-HHHcC-CCeEEEEEEcCCC----chHHHHHhC
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELA-EQLEG-MGVKVGKFRADGD----HKEFAKQKL 391 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la-~~~~~-~~v~~~~Vd~~~~----~~~l~~~~~ 391 (430)
...+.|++-+|+.++. ..+.+||.|=... |--.-...|.++| +..+. +++.++.|-+.+. |.+|+ ++|
T Consensus 4 ~G~v~LD~~tFdKvi~---kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~La-ery 77 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIP---KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELA-ERY 77 (126)
T ss_dssp TTSEEESTTHHHHHGG---GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHH-HHT
T ss_pred Cceeeccceehhheec---cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHH-HHh
Confidence 3578899999999987 7899999997654 2233455678888 44433 4799999977542 48999 999
Q ss_pred CC--CCCCEEEEEeCCCcceeec--CCCCCCHHHHHHHHHH
Q 042284 392 QL--VSFPTILFFPKHSAKPVKY--PSEKRDVDSLMAFVNA 428 (430)
Q Consensus 392 ~V--~~~Ptl~~~~~g~~~~~~~--~gg~~~~~~l~~~i~~ 428 (430)
+| ..+|.+++|..+...++.| .+ ..+.++|..|+.+
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~-~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDG-DVTADNLQRFVKS 117 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS--S-HHHHHHHHHH
T ss_pred CCCcccCCEEEEecCCCCCCccCCccC-CccHHHHHHHHHh
Confidence 99 6799999999777778888 65 6899999999975
No 208
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3.6e-05 Score=72.52 Aligned_cols=109 Identities=14% Similarity=0.233 Sum_probs=87.6
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCC----CCHhHHHHHHHHHHHHHHHcC-------CCeEEEEEEcCCCchHH
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAP----WCHFCQAMEGSYIELAEQLEG-------MGVKVGKFRADGDHKEF 386 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~----wC~~C~~~~p~~~~la~~~~~-------~~v~~~~Vd~~~~~~~l 386 (430)
..|+.+++++|..++.....+-.++|+|.|. .|.-|+....+++.++..+.. .++-|..||.++. +++
T Consensus 40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-p~~ 118 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-PQV 118 (331)
T ss_pred CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-HHH
Confidence 6899999999999998656677789999984 799999999999999988643 2688999999999 999
Q ss_pred HHHhCCCCCCCEEEEEeCCCcc------eeecCCCCCCHHHHHHHHHHh
Q 042284 387 AKQKLQLVSFPTILFFPKHSAK------PVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 387 ~~~~~~V~~~Ptl~~~~~g~~~------~~~~~gg~~~~~~l~~~i~~~ 429 (430)
. +.++++.+|++++|.+.+.. ...+.-| ..+|++.+|++..
T Consensus 119 F-q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g-~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 119 F-QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLG-FEAEQIAQFVADR 165 (331)
T ss_pred H-HHhcccCCCeEEEeCCCccccccCccchhhhcc-hhHHHHHHHHHHh
Confidence 9 99999999999999554321 1111112 3489999999753
No 209
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.02 E-value=6e-05 Score=67.87 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=69.4
Q ss_pred CCCcEEEEEe-CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC------------------------chHHHHHhC
Q 042284 337 REDPWLIVLY-APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD------------------------HKEFAKQKL 391 (430)
Q Consensus 337 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~------------------------~~~l~~~~~ 391 (430)
.+++++|.|| +.||+.|....+.|.++.+++...++.++.|+.|.. +..++ +.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia-~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALT-RNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHH-HHc
Confidence 4678999999 999999999999999999999765677887766531 14677 888
Q ss_pred CC----CCC--CEEEEEeCCCcceeec---CCCCCCHHHHHHHHHHhC
Q 042284 392 QL----VSF--PTILFFPKHSAKPVKY---PSEKRDVDSLMAFVNALR 430 (430)
Q Consensus 392 ~V----~~~--Ptl~~~~~g~~~~~~~---~gg~~~~~~l~~~i~~~~ 430 (430)
++ .++ |+.++++..+.+...+ .+..++.+++.+.|+.++
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 88 366 9999997555432211 122378999999988763
No 210
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.00 E-value=4e-05 Score=67.87 Aligned_cols=88 Identities=11% Similarity=0.163 Sum_probs=62.9
Q ss_pred CCCcEEEEEeCCC-CHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC----------------------chHHHHHhCCC
Q 042284 337 REDPWLIVLYAPW-CHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD----------------------HKEFAKQKLQL 393 (430)
Q Consensus 337 ~~k~vlV~Fya~w-C~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~----------------------~~~l~~~~~~V 393 (430)
.+++++|.||+.| |++|....|.|+++++++. ++.++.|+.|.. ...++ +.|++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~-~~~gv 119 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFG-KAYGV 119 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHH-HHhCC
Confidence 4689999999999 9999999999999999884 478888876531 02567 78898
Q ss_pred CCCC---------EEEEEeCCCcceeecC----CCCCCHHHHHHHHH
Q 042284 394 VSFP---------TILFFPKHSAKPVKYP----SEKRDVDSLMAFVN 427 (430)
Q Consensus 394 ~~~P---------tl~~~~~g~~~~~~~~----gg~~~~~~l~~~i~ 427 (430)
...| +.++++..+.+...+. ....+.+++.++|+
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 8777 8888864443322221 12345677766664
No 211
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.00 E-value=1.5e-05 Score=61.63 Aligned_cols=59 Identities=12% Similarity=0.286 Sum_probs=44.6
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCch----HHHHHhCCCCCCCEEEEEeCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHK----EFAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~----~l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
++.|+++||++|+.+.+.++++. .+. .+.+..||.+.+.. .+. +.+++.++|+++ .+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~-~~~g~~~vP~v~--i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLE-EITGQRTVPNIF--INGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHH-HHhCCCCCCeEE--ECCE
Confidence 47899999999999999999886 333 47788888765522 255 667999999974 4555
No 212
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=0.00012 Score=59.62 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=77.8
Q ss_pred chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCC
Q 042284 326 TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKH 405 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g 405 (430)
...++.+. ....+.++|-|...|-+.|..|...+.++++.+.+ -..++-+|+++- +++. +-|++...||+++|-++
T Consensus 12 ~~VdqaI~-~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV-~~~~-~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 12 WEVDQAIL-STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEV-PDFV-KMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHHh-cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchh-hhhh-hhhcccCCceEEEEEcC
Confidence 44455553 34678999999999999999999999999999987 567888899998 9999 99999999999999887
Q ss_pred CcceeecCC--------CCCCHHHHHHHHHH
Q 042284 406 SAKPVKYPS--------EKRDVDSLMAFVNA 428 (430)
Q Consensus 406 ~~~~~~~~g--------g~~~~~~l~~~i~~ 428 (430)
+-..+.+.. ...+.+++++.|+.
T Consensus 88 kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 88 KHMKIDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred ceEEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 643333322 23456777777764
No 213
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.98 E-value=2.6e-05 Score=65.79 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=50.8
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhC---CCCCCCEEEEEeCCCcceeecC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKL---QLVSFPTILFFPKHSAKPVKYP 413 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~---~V~~~Ptl~~~~~g~~~~~~~~ 413 (430)
..+.-++-|..+|||.|....|.+.++++..++ +.+-.+..|++ +++. .+| +...+|++++++++.+ ....-
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd~~-~el~-~~~lt~g~~~IP~~I~~d~~~~-~lg~w 114 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRDEN-KELM-DQYLTNGGRSIPTFIFLDKDGK-ELGRW 114 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HHHH-HHHT-TTTTT-SS--SSEEEEE-TT---EEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEecCC-hhHH-HHHHhCCCeecCEEEEEcCCCC-EeEEE
Confidence 345677779999999999999999999998764 77777777777 6766 444 5789999999976543 45444
Q ss_pred CCCCCHHHHHHHHHHhC
Q 042284 414 SEKRDVDSLMAFVNALR 430 (430)
Q Consensus 414 gg~~~~~~l~~~i~~~~ 430 (430)
| . -++.+.+++++++
T Consensus 115 g-e-rP~~~~~~~~~~k 129 (129)
T PF14595_consen 115 G-E-RPKEVQELVDEYK 129 (129)
T ss_dssp E-S-S-HHHH-------
T ss_pred c-C-CCHHHhhccccCC
Confidence 4 2 3566777766553
No 214
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.96 E-value=5.9e-05 Score=68.91 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=66.7
Q ss_pred CCcEEE-EEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC--------------------------chHHHHHh
Q 042284 338 EDPWLI-VLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD--------------------------HKEFAKQK 390 (430)
Q Consensus 338 ~k~vlV-~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~--------------------------~~~l~~~~ 390 (430)
++.++| .|+++||+.|....+.|.++.++++..++.++.|+++.. +..++ +.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia-~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA-RE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH-HH
Confidence 555554 689999999999999999999999865678888766531 14566 78
Q ss_pred CCCC------CCCEEEEEeCCCcceeec----CCCCCCHHHHHHHHHHhC
Q 042284 391 LQLV------SFPTILFFPKHSAKPVKY----PSEKRDVDSLMAFVNALR 430 (430)
Q Consensus 391 ~~V~------~~Ptl~~~~~g~~~~~~~----~gg~~~~~~l~~~i~~~~ 430 (430)
|+|. .+|+++++++.+.+.... .+ .++.+++...|+.++
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~-gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAET-GRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCC-CCCHHHHHHHHHHhh
Confidence 8874 589999997655432211 23 489999999988763
No 215
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.96 E-value=3.2e-05 Score=71.50 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=79.1
Q ss_pred EEEechhHHHHHH-HHHHhcCCCcE-EEEecCCC----CC-HHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCC
Q 042284 77 AIAFSGAEDVVLI-EYAKLTGRPFR-VFSLDTGR----LN-PETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFS 149 (430)
Q Consensus 77 ~vs~SGGKDS~vl-~l~~~~~~~i~-vi~~DTg~----~f-pet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~ 149 (430)
+++|||||||+++ +++.+.+.++. ++++++.. .+ ..-.+.+++.++.+|+++.++.-..... ....
T Consensus 1 ~vl~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~-~~~~------ 73 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKE-KEVE------ 73 (218)
T ss_pred CeeecCcHHHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCCh-HHHH------
Confidence 3789999999776 77777776664 55665431 11 1235778999999999987664321000 0000
Q ss_pred CCccchhhhhhhhchHHHHHHHh-cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccccchHHHHH
Q 042284 150 FYEDGHQECCRIRKVRPLKRALK-GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWN 228 (430)
Q Consensus 150 ~~~~~~~~cc~~~K~~pl~~~~~-~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~dVw~ 228 (430)
. + ..-+.++.+ +++.++.|.-.++- .|.....+... .++--+.||.+++..++..
T Consensus 74 ------~-----l-~~~l~~~~~~g~~~vv~G~i~sd~--~~~~~e~v~~~----------~gl~~~~PLw~~~~~el~~ 129 (218)
T TIGR03679 74 ------D-----L-KGALKELKREGVEGIVTGAIASRY--QKSRIERICEE----------LGLKVFAPLWGRDQEEYLR 129 (218)
T ss_pred ------H-----H-HHHHHHHHHcCCCEEEECCcccHh--HHHHHHHHHHh----------CCCeEEeehhcCCHHHHHH
Confidence 0 0 011112222 67899999988875 34333322111 3567889999999999998
Q ss_pred HHHHcCCC
Q 042284 229 FLRAMNIP 236 (430)
Q Consensus 229 yi~~~~lp 236 (430)
-+...|+.
T Consensus 130 ~~~~~G~~ 137 (218)
T TIGR03679 130 ELVERGFR 137 (218)
T ss_pred HHHHCCCE
Confidence 87776653
No 216
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.95 E-value=5.6e-05 Score=65.22 Aligned_cols=88 Identities=15% Similarity=0.263 Sum_probs=60.5
Q ss_pred CcEEEEEe-CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC--------------------c--hHHHHHhCCCC-
Q 042284 339 DPWLIVLY-APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD--------------------H--KEFAKQKLQLV- 394 (430)
Q Consensus 339 k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~--------------------~--~~l~~~~~~V~- 394 (430)
++++|.|| ++||+.|....|.++++.+++++.++.++.|+.+.. + ..+. +.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~g~~~ 107 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVA-KAYGVFD 107 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHH-HHhCCcc
Confidence 77888887 999999999999999999999765788888876531 1 3456 677876
Q ss_pred ---CC--CEEEEEeCCCcceeecCCC---CCCHHHHHHHHH
Q 042284 395 ---SF--PTILFFPKHSAKPVKYPSE---KRDVDSLMAFVN 427 (430)
Q Consensus 395 ---~~--Ptl~~~~~g~~~~~~~~gg---~~~~~~l~~~i~ 427 (430)
++ |++++++..++....+.|. ..+..++.+.|+
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 33 3778886444333333332 355666665553
No 217
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.92 E-value=9e-05 Score=56.42 Aligned_cols=74 Identities=20% Similarity=0.415 Sum_probs=54.0
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHH
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSL 422 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l 422 (430)
|.+++++|+.|..+...+++++..++ +.+-.+|..+. ++ . .+|+|.++|++++ ||+ ..+.|...+.++|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~~~~-~~-~-~~ygv~~vPalvI--ng~---~~~~G~~p~~~el 71 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG---IEVEIIDIEDF-EE-I-EKYGVMSVPALVI--NGK---VVFVGRVPSKEEL 71 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT---EEEEEEETTTH-HH-H-HHTT-SSSSEEEE--TTE---EEEESS--HHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC---CeEEEEEccCH-HH-H-HHcCCCCCCEEEE--CCE---EEEEecCCCHHHH
Confidence 34478889999999999999998883 66666677444 44 4 6999999999954 666 4555545678889
Q ss_pred HHHHH
Q 042284 423 MAFVN 427 (430)
Q Consensus 423 ~~~i~ 427 (430)
.++|+
T Consensus 72 ~~~l~ 76 (76)
T PF13192_consen 72 KELLE 76 (76)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98875
No 218
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.89 E-value=5.3e-05 Score=65.00 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=51.8
Q ss_pred CCCcEEEEEeCCC-CHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---------------------c-hHHHHHhCCC
Q 042284 337 REDPWLIVLYAPW-CHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---------------------H-KEFAKQKLQL 393 (430)
Q Consensus 337 ~~k~vlV~Fya~w-C~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---------------------~-~~l~~~~~~V 393 (430)
.+++++|.||+.| |++|+...|.++++.++++ ++.++.|+.+.. . ..++ +.|++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~~~gv 101 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFG-KAYGV 101 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHH-HHhCC
Confidence 4689999999998 6999999999999999985 488888887521 1 3455 67777
Q ss_pred CC------CCEEEEEeCCC
Q 042284 394 VS------FPTILFFPKHS 406 (430)
Q Consensus 394 ~~------~Ptl~~~~~g~ 406 (430)
.. .|+.++++..+
T Consensus 102 ~~~~~~~~~~~~~iid~~G 120 (143)
T cd03014 102 LIKDLGLLARAVFVIDENG 120 (143)
T ss_pred eeccCCccceEEEEEcCCC
Confidence 53 68888886443
No 219
>PRK15000 peroxidase; Provisional
Probab=97.88 E-value=0.0001 Score=67.23 Aligned_cols=93 Identities=13% Similarity=0.263 Sum_probs=69.5
Q ss_pred CCCcEEEEEeC-CCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---------------------------chHHHH
Q 042284 337 REDPWLIVLYA-PWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---------------------------HKEFAK 388 (430)
Q Consensus 337 ~~k~vlV~Fya-~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---------------------------~~~l~~ 388 (430)
.+++++|.||+ .||+.|....+.|.+++++++..++.++.|.+|.. +..++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia- 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ- 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH-
Confidence 47899999999 59999999999999999999866788888876632 13455
Q ss_pred HhCCCC------CCCEEEEEeCCCcceeecCC---CCCCHHHHHHHHHHhC
Q 042284 389 QKLQLV------SFPTILFFPKHSAKPVKYPS---EKRDVDSLMAFVNALR 430 (430)
Q Consensus 389 ~~~~V~------~~Ptl~~~~~g~~~~~~~~g---g~~~~~~l~~~i~~~~ 430 (430)
+.|+|. .+|+.+++++.+.+...+.+ -.++.+++.+.|+.++
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 678887 68999999755433222222 1378999999887663
No 220
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.87 E-value=0.00018 Score=59.15 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=77.7
Q ss_pred ceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHH---HcCCCeEEEEEEcCCCchHHHHHhCCCCC-
Q 042284 320 LVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQ---LEGMGVKVGKFRADGDHKEFAKQKLQLVS- 395 (430)
Q Consensus 320 v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~---~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~- 395 (430)
|.++|.+|++.+.. .+.+..+.|+. -..-..+...+.++|++ +++ ++.|+.+|.+.. .... +.|++..
T Consensus 1 ~~e~t~e~~~~~~~---~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~-~~~~-~~fgl~~~ 72 (111)
T cd03072 1 VREITFENAEELTE---EGLPFLILFHD--KDDLESLKEFKQAVARQLISEKG-AINFLTADGDKF-RHPL-LHLGKTPA 72 (111)
T ss_pred CcccccccHHHHhc---CCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHh-hhHH-HHcCCCHh
Confidence 46788889887765 66666666772 23447788999999999 988 799999999998 5678 8999997
Q ss_pred -CCEEEEEeCCCcceee-cCCCCCCHHHHHHHHHHh
Q 042284 396 -FPTILFFPKHSAKPVK-YPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 396 -~Ptl~~~~~g~~~~~~-~~gg~~~~~~l~~~i~~~ 429 (430)
+|.+.+.......... ..+ ..+.++|.+|++++
T Consensus 73 ~~P~i~i~~~~~~~Ky~~~~~-~~t~~~i~~Fv~~~ 107 (111)
T cd03072 73 DLPVIAIDSFRHMYLFPDFED-VYVPGKLKQFVLDL 107 (111)
T ss_pred HCCEEEEEcchhcCcCCCCcc-ccCHHHHHHHHHHH
Confidence 9999998764411222 333 68899999999875
No 221
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00051 Score=64.78 Aligned_cols=162 Identities=11% Similarity=0.040 Sum_probs=96.6
Q ss_pred CcEEEEechhHHHHHH-HHHHhcCCCcEEEEecC-------C--CCCHHHHHHHHHHHHHhCCcEEEEccCchH----HH
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDT-------G--RLNPETHQFFDTVEKHYGIRIEYTFPNAVE----VQ 139 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DT-------g--~~fpet~~~~~~~~~~~gl~i~~~~p~~~~----~~ 139 (430)
++|+|+.|||-||.|. +|++..+.++..+|+-. | .....-.+.+++++++++++++.+.-...- +.
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs 85 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFS 85 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcCCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHH
Confidence 4699999999999765 88888899888777632 1 223455678999999999999877544331 22
Q ss_pred HHHHhcCCCCCCccchhhhhhhhchHHHHHHH-h--cCceEEEeeeccCCcccccC--CCee--eecCC----CCcccCC
Q 042284 140 ALVRTKGLFSFYEDGHQECCRIRKVRPLKRAL-K--GLRAWITGQRKDQSPGTRAE--IPVV--QIDTS----FEGIDGG 208 (430)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~-~--~~~~~i~G~R~~Es~~~R~~--~~~~--~~d~~----~~~~~~~ 208 (430)
.+++++..-..+ ...--|....|...+...+ . +++.+.||+=+--+. .-.. ...+ ..|.. |.-..-.
T Consensus 86 ~~L~~Y~~G~TP-NPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~-~~~~~~~~~l~~~~d~~KDQt~FL~~in 163 (377)
T KOG2805|consen 86 PFLEEYENGRTP-NPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVL-EDEDNAESHLLISKDMVKDQTYFLSTIN 163 (377)
T ss_pred HHHHHHhcCCCC-CCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeec-CcccCcceeEeecccccCCceeEeeccc
Confidence 233433221112 1223587888988444444 3 667888997443221 0000 0000 11110 0000000
Q ss_pred CCC-eEEEecccccchHHHHHHHHHcCCCC
Q 042284 209 KGS-LVKWNPLANVKGQDIWNFLRAMNIPI 237 (430)
Q Consensus 209 ~~~-~~~~~Pi~dWt~~dVw~yi~~~~lp~ 237 (430)
... .....||-+|++.+|....+..|+|.
T Consensus 164 ~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~ 193 (377)
T KOG2805|consen 164 QTQLKRLLFPLGCLTKSEVKKLAKQAGFPN 193 (377)
T ss_pred HHHHHhhhccCcccCHHHHHHHHHhcCCcc
Confidence 000 11357999999999999999999983
No 222
>PRK00876 nadE NAD synthetase; Reviewed
Probab=97.83 E-value=0.00071 Score=66.05 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=55.1
Q ss_pred HHHHHHHHHH-cC-CcEEEEechhHHHHHH-HHHHhc-C-CCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 62 LEIMDKAFQK-FG-NDIAIAFSGAEDVVLI-EYAKLT-G-RPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 62 ~~~i~~~~~~-~~-~~i~vs~SGGKDS~vl-~l~~~~-~-~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
.+.|+..++. .+ ++++|++|||.||+++ .|+.++ + ..+..++.+.+..-++..++++.+++.+|++++++.-.
T Consensus 20 ~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~ 97 (326)
T PRK00876 20 RAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDIT 97 (326)
T ss_pred HHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECc
Confidence 4456666665 44 4699999999999776 666664 4 35677888887666788899999999999998766543
No 223
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.82 E-value=0.00052 Score=58.00 Aligned_cols=105 Identities=11% Similarity=0.181 Sum_probs=75.9
Q ss_pred CceEcccchHHH-HHHhcCCCCcEEEEEeCC--CCHh-H-HHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCC
Q 042284 319 KLVSFRRTGIEN-LARLQNREDPWLIVLYAP--WCHF-C-QAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQL 393 (430)
Q Consensus 319 ~v~~lt~~~f~~-~i~~~~~~k~vlV~Fya~--wC~~-C-~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V 393 (430)
.|++|+++++-+ .- ..++..+|-|.-. -|.. + ..+...+.++|+.++++.+.|+.+|.++. ..+. +.|+|
T Consensus 3 ~~~~l~~~~~~~~~C---~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~-~~~~-~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETC---EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ-LDLE-EALNI 77 (130)
T ss_pred ceEEecCHHHHHhhc---cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc-HHHH-HHcCC
Confidence 588888766533 32 2355556656432 1222 3 45678899999999993399999999998 7888 99999
Q ss_pred C--CCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 394 V--SFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 394 ~--~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
. ++|+++++...+.+...+.+ ..+.++|.+|++++
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~-~~t~e~i~~Fv~~~ 114 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKG-SFSEDGINEFLREL 114 (130)
T ss_pred CccCCCEEEEEecccCccccccC-ccCHHHHHHHHHHH
Confidence 5 49999999876532332445 78999999999875
No 224
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.76 E-value=0.00027 Score=66.80 Aligned_cols=93 Identities=20% Similarity=0.291 Sum_probs=68.2
Q ss_pred CCCcEEEEEe-CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---------------------------chHHHH
Q 042284 337 REDPWLIVLY-APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---------------------------HKEFAK 388 (430)
Q Consensus 337 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---------------------------~~~l~~ 388 (430)
.++++|+.|| +.||+.|....+.|.++.+++++.++.++.|.+|.. +..++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia- 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS- 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH-
Confidence 3567777777 899999999999999999999765677777766541 14577
Q ss_pred HhCCCC-----CCCEEEEEeCCCcceeec---CCCCCCHHHHHHHHHHhC
Q 042284 389 QKLQLV-----SFPTILFFPKHSAKPVKY---PSEKRDVDSLMAFVNALR 430 (430)
Q Consensus 389 ~~~~V~-----~~Ptl~~~~~g~~~~~~~---~gg~~~~~~l~~~i~~~~ 430 (430)
+.|++. ..|+.++++..+.+...+ ....++.+++...|+.++
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 788885 589999997444322211 122479999999888764
No 225
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.72 E-value=0.00023 Score=65.12 Aligned_cols=90 Identities=19% Similarity=0.297 Sum_probs=64.0
Q ss_pred cEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC--------------------------chHHHHHhCCC
Q 042284 340 PWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD--------------------------HKEFAKQKLQL 393 (430)
Q Consensus 340 ~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~--------------------------~~~l~~~~~~V 393 (430)
.+|+.|+++||+.|....+.|.+++++++..++.++.|+++.. +..++ +.|++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia-~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVA-KLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHH-HHcCC
Confidence 4566889999999999999999999999866788888876641 13567 78887
Q ss_pred C----C----CCEEEEEeCCCcceeecCC---CCCCHHHHHHHHHHhC
Q 042284 394 V----S----FPTILFFPKHSAKPVKYPS---EKRDVDSLMAFVNALR 430 (430)
Q Consensus 394 ~----~----~Ptl~~~~~g~~~~~~~~g---g~~~~~~l~~~i~~~~ 430 (430)
. + +|+.+++++.+.+.....+ ..++.+++.+.|++++
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 5 2 3467888655433222211 1368899999888763
No 226
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.68 E-value=0.00019 Score=61.02 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=55.3
Q ss_pred CCCcEEEEEe-CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---------------------chHHHHHhCCCC
Q 042284 337 REDPWLIVLY-APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---------------------HKEFAKQKLQLV 394 (430)
Q Consensus 337 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---------------------~~~l~~~~~~V~ 394 (430)
.+++++|.|| +.||+.|....|.+.++.++++..++.|+.|..+.. +..+. +.|++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~g~~ 99 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFA-KAYGVL 99 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHH-HHcCCc
Confidence 5789999999 789999999999999999998655688888876532 13455 677776
Q ss_pred CCC---------EEEEEeCCCcceeecCC
Q 042284 395 SFP---------TILFFPKHSAKPVKYPS 414 (430)
Q Consensus 395 ~~P---------tl~~~~~g~~~~~~~~g 414 (430)
..| +++++++.+.+...+.+
T Consensus 100 ~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 100 IEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred cccccccCceeEEEEEECCCCcEEEEEec
Confidence 655 67777654433333333
No 227
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=97.66 E-value=0.0003 Score=67.06 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=66.6
Q ss_pred CCcEEEEechhHHHHHH-HHHHhcCC-CcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHH----hcC
Q 042284 73 GNDIAIAFSGAEDVVLI-EYAKLTGR-PFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVR----TKG 146 (430)
Q Consensus 73 ~~~i~vs~SGGKDS~vl-~l~~~~~~-~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~----~~g 146 (430)
+.+|.+.+|||.||+++ .++.+... .+..++++.+....+-.++++++++++|++.+++......+..... ...
T Consensus 15 ~~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (269)
T cd01991 15 DVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEFTPADLLAALPDVIWELD 94 (269)
T ss_pred CCceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEcCHHHHHHHHHHHHHHhC
Confidence 35699999999999766 66666543 3677777766543334789999999999998877665544333221 111
Q ss_pred CCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCC
Q 042284 147 LFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQS 186 (430)
Q Consensus 147 ~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es 186 (430)
.+ ...|.. .-..-+.+... +.+++++|.-+||-
T Consensus 95 ~p------~~~~~~-~~~~~l~~~a~~~~~~v~l~G~g~Del 129 (269)
T cd01991 95 EP------FADSSA-IPLYLLSRLARKHGIKVVLSGEGADEL 129 (269)
T ss_pred CC------CCCcHH-HHHHHHHHHHHHhCCEEEEecCCcccc
Confidence 11 111222 22222333333 34799999999985
No 228
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.65 E-value=0.00016 Score=56.29 Aligned_cols=75 Identities=12% Similarity=0.312 Sum_probs=53.7
Q ss_pred EEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc---hHHHHHhCC--CCCCCEEEEEeCCCcceeecCCC
Q 042284 341 WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH---KEFAKQKLQ--LVSFPTILFFPKHSAKPVKYPSE 415 (430)
Q Consensus 341 vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~---~~l~~~~~~--V~~~Ptl~~~~~g~~~~~~~~gg 415 (430)
-++.|+.+||++|+.....|+++..++. ++.+..+|++++. .++. ...+ +..+|+++ .+|+ . .||
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~~~~~~~el~-~~~~~~~~~vP~if--i~g~--~---igg 71 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHAEGISKADLE-KTVGKPVETVPQIF--VDQK--H---IGG 71 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECCCChHHHHHHH-HHHCCCCCcCCEEE--ECCE--E---EcC
Confidence 3678999999999999999999987764 4888899988651 2444 3333 57899975 4665 2 232
Q ss_pred CCCHHHHHHHHHH
Q 042284 416 KRDVDSLMAFVNA 428 (430)
Q Consensus 416 ~~~~~~l~~~i~~ 428 (430)
.++|.++++.
T Consensus 72 ---~~~~~~~~~~ 81 (85)
T PRK11200 72 ---CTDFEAYVKE 81 (85)
T ss_pred ---HHHHHHHHHH
Confidence 4667766653
No 229
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.65 E-value=0.00024 Score=52.76 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=46.6
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHh----CCCCCCCEEEEEeCCCcceeecCCCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQK----LQLVSFPTILFFPKHSAKPVKYPSEKR 417 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~----~~V~~~Ptl~~~~~g~~~~~~~~gg~~ 417 (430)
++.|+++||++|..+...+++. ++.+..+|++.+ +... +. .++.++|++++ +|+ ...| .
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------~i~~~~~~i~~~-~~~~-~~~~~~~~~~~vP~i~~--~~~----~i~g--~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------GIPFEEVDVDED-PEAL-EELKKLNGYRSVPVVVI--GDE----HLSG--F 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------CCCeEEEeCCCC-HHHH-HHHHHHcCCcccCEEEE--CCE----EEec--C
Confidence 5779999999999998877652 367777888766 4443 33 36889999875 332 2333 4
Q ss_pred CHHHHHHHH
Q 042284 418 DVDSLMAFV 426 (430)
Q Consensus 418 ~~~~l~~~i 426 (430)
+.+.|.+++
T Consensus 65 ~~~~l~~~~ 73 (73)
T cd02976 65 RPDKLRALL 73 (73)
T ss_pred CHHHHHhhC
Confidence 666776653
No 230
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.64 E-value=0.00062 Score=55.85 Aligned_cols=100 Identities=10% Similarity=0.105 Sum_probs=72.9
Q ss_pred eEcccchHHHHHHhcCCCCcEEEEEe----CCCCHhHHHHHHHHHHHHHHHc-CCCeEEEEEEcCCCchHHHHHhCCCCC
Q 042284 321 VSFRRTGIENLARLQNREDPWLIVLY----APWCHFCQAMEGSYIELAEQLE-GMGVKVGKFRADGDHKEFAKQKLQLVS 395 (430)
Q Consensus 321 ~~lt~~~f~~~i~~~~~~k~vlV~Fy----a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~Vd~~~~~~~l~~~~~~V~~ 395 (430)
-++|.+|..... ..+.++.|+ +..-..-..+...+.++|+.++ + ++.|+.+|.++. .... +.|++..
T Consensus 2 ~~~~~en~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~-~~~l-~~fgl~~ 73 (111)
T cd03073 2 GHRTKDNRAQFT-----KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDF-SHEL-EEFGLDF 73 (111)
T ss_pred CeeccchHHHhc-----cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHH-HHHH-HHcCCCc
Confidence 356777777764 234444443 3333555778899999999999 7 799999999988 6678 8999984
Q ss_pred ----CCEEEEEeCCCcceeecCCCCC-CHHHHHHHHHHhC
Q 042284 396 ----FPTILFFPKHSAKPVKYPSEKR-DVDSLMAFVNALR 430 (430)
Q Consensus 396 ----~Ptl~~~~~g~~~~~~~~gg~~-~~~~l~~~i~~~~ 430 (430)
+|++.++..... -....+ .. +.++|.+|+++++
T Consensus 74 ~~~~~P~~~i~~~~~~-KY~~~~-~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 74 SGGEKPVVAIRTAKGK-KYVMEE-EFSDVDALEEFLEDFF 111 (111)
T ss_pred ccCCCCEEEEEeCCCC-ccCCCc-ccCCHHHHHHHHHHhC
Confidence 999999875332 232344 57 8999999998763
No 231
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.63 E-value=0.0013 Score=54.62 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=72.5
Q ss_pred chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCC-EEEEEeC
Q 042284 326 TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP-TILFFPK 404 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~P-tl~~~~~ 404 (430)
-..++.+. ...++.++|-|..+|-+.|..+...+.++++..++ -..++.||+++- +++. +.|++. -| |+++|-+
T Consensus 9 ~~VDqAI~-~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~V-pdfn-~~yel~-dP~tvmFF~r 83 (133)
T PF02966_consen 9 WHVDQAIL-SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEV-PDFN-QMYELY-DPCTVMFFFR 83 (133)
T ss_dssp HHHHHHHH-H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTT-HCCH-HHTTS--SSEEEEEEET
T ss_pred chHHHHHh-ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccc-hhhh-cccccC-CCeEEEEEec
Confidence 44566654 45689999999999999999999999999999988 678999999999 9999 999999 67 4666646
Q ss_pred CCcceeecC--------CCCCCHHHHHHHHHH
Q 042284 405 HSAKPVKYP--------SEKRDVDSLMAFVNA 428 (430)
Q Consensus 405 g~~~~~~~~--------gg~~~~~~l~~~i~~ 428 (430)
++-....+. +...+.++|++.|+.
T Consensus 84 nkhm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 84 NKHMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp TEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred CeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 553233332 223467888887764
No 232
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=4e-05 Score=69.07 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=62.8
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCc
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSA 407 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~ 407 (430)
..+..++.|||+||.+|+.|...++.+++..+ ++.|++++.++. ++++ ..+.|..+|++.++..|+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~-~eis-~~~~v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEF-PEIS-NLIAVEAVPYFVFFFLGEK 82 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhh-hHHH-HHHHHhcCceeeeeecchh
Confidence 78899999999999999999999999999994 599999999999 9999 9999999999999988874
No 233
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.61 E-value=0.00022 Score=60.91 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=39.0
Q ss_pred CCCcEEEEEeCCCCHh-HHHHHHHHHHHHHHHcCC---CeEEEEEEcCC
Q 042284 337 REDPWLIVLYAPWCHF-CQAMEGSYIELAEQLEGM---GVKVGKFRADG 381 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~-C~~~~p~~~~la~~~~~~---~v~~~~Vd~~~ 381 (430)
.+++++|.||++||++ |....+.+.++.+++++. ++.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4789999999999998 999999999999999763 48888887753
No 234
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.60 E-value=0.00087 Score=53.22 Aligned_cols=88 Identities=22% Similarity=0.375 Sum_probs=67.6
Q ss_pred hHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCC
Q 042284 327 GIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 327 ~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
.++.++. .+++++|-|+.++++ .....|.++|+.+.+ .+.|+.++ + .+++ +++.+. .|++++|++..
T Consensus 9 ~l~~~~~---~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~-~~~~-~~~~~~-~~~i~l~~~~~ 75 (97)
T cd02981 9 ELEKFLD---KDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---D-KEVA-KKLKVK-PGSVVLFKPFE 75 (97)
T ss_pred HHHHHhc---cCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---h-HHHH-HHcCCC-CCceEEeCCcc
Confidence 3444443 788999999999887 467789999999976 58887765 3 6778 777775 59999998754
Q ss_pred cceeecCCCCCCHHHHHHHHHH
Q 042284 407 AKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 407 ~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
.....|.| ..+.++|.+||..
T Consensus 76 ~~~~~y~g-~~~~~~l~~fi~~ 96 (97)
T cd02981 76 EEPVEYDG-EFTEESLVEFIKD 96 (97)
T ss_pred cCCccCCC-CCCHHHHHHHHHh
Confidence 44677887 5779999999964
No 235
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.60 E-value=0.00046 Score=63.63 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=67.3
Q ss_pred CCc-EEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC--------------------------chHHHHHh
Q 042284 338 EDP-WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD--------------------------HKEFAKQK 390 (430)
Q Consensus 338 ~k~-vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~--------------------------~~~l~~~~ 390 (430)
++. ||+.|+++||+.|....+.|.++++++...++.++.|++|.. +..++ +.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va-~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS-NQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH-HH
Confidence 454 567899999999999999999999999765788888877642 13456 77
Q ss_pred CCCC-------CCCEEEEEeCCCcc-eee-cC-CCCCCHHHHHHHHHHhC
Q 042284 391 LQLV-------SFPTILFFPKHSAK-PVK-YP-SEKRDVDSLMAFVNALR 430 (430)
Q Consensus 391 ~~V~-------~~Ptl~~~~~g~~~-~~~-~~-gg~~~~~~l~~~i~~~~ 430 (430)
|++. .+|+++++++.+.+ ... +. ...++.+++.+.|+.++
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq 156 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ 156 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 8873 67999999755433 222 21 11378999999988763
No 236
>PRK00768 nadE NAD synthetase; Reviewed
Probab=97.58 E-value=0.0008 Score=63.68 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=84.0
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHhc----C-----CCcEEEEecCCCCCHHHHHHHHHHHHHhCC-cEEE
Q 042284 63 EIMDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKLT----G-----RPFRVFSLDTGRLNPETHQFFDTVEKHYGI-RIEY 130 (430)
Q Consensus 63 ~~i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~~----~-----~~i~vi~~DTg~~fpet~~~~~~~~~~~gl-~i~~ 130 (430)
+.|+..+++.+ ..++|+.|||.||+|. .|+.++ + +.+.++.+=.....+++.+.++.+++.+|+ ++.+
T Consensus 27 ~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~~~~ 106 (268)
T PRK00768 27 DFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDRVLT 106 (268)
T ss_pred HHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCeeEE
Confidence 44555555555 5699999999999776 555443 2 223344443344456778889999999999 6655
Q ss_pred Ec--cCchHHHHHHHhcCCCCCCccch-hhhhhhhchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecCCCCcccC
Q 042284 131 TF--PNAVEVQALVRTKGLFSFYEDGH-QECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDG 207 (430)
Q Consensus 131 ~~--p~~~~~~~~~~~~g~~~~~~~~~-~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~ 207 (430)
+. |....+...+...+.. ..+.. ..-.-...+.-+..........+.|+ ++|.... +..-..|+
T Consensus 107 i~I~~~~~~~~~~l~~~~~~--~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT------~N~sE~~-~Gy~TkyG---- 173 (268)
T PRK00768 107 VNIKPAVDASVAALEAAGIE--LSDFVKGNIKARERMIAQYAIAGATGGLVVGT------DHAAEAV-TGFFTKFG---- 173 (268)
T ss_pred EECHHHHHHHHHHHhhcCCC--chhhHHHHHHHHHHHHHHHHHHccCCCEEEcC------CcccHHH-hCceeccC----
Confidence 53 2222232222221110 00000 00000011111222222334555554 2333221 11111121
Q ss_pred CCCCeEEEecccccchHHHHHHHHHcCCC
Q 042284 208 GKGSLVKWNPLANVKGQDIWNFLRAMNIP 236 (430)
Q Consensus 208 ~~~~~~~~~Pi~dWt~~dVw~yi~~~~lp 236 (430)
.+..-++||.++++.+|+...+..|+|
T Consensus 174 --D~~~d~~pi~~L~KteV~~La~~l~vP 200 (268)
T PRK00768 174 --DGGADILPLFGLNKRQGRALLAALGAP 200 (268)
T ss_pred --CccccchhhcCCcHHHHHHHHHHhCCC
Confidence 124578999999999999999999986
No 237
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.57 E-value=0.0004 Score=64.81 Aligned_cols=81 Identities=15% Similarity=0.325 Sum_probs=59.1
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEE---------------------------------------
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKF--------------------------------------- 377 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~V--------------------------------------- 377 (430)
+++.+++.|.-+.|++|+++.+.+.++.+. ++.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 567889999999999999999988776431 1332221
Q ss_pred -----EcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 378 -----RADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 378 -----d~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+++++ .+++ ++++|+++||++ |.+|+ .+ .| ..+.++|.++|++.
T Consensus 182 ~~c~~~v~~~-~~la-~~lgi~gTPtiv-~~~G~--~~--~G-~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADH-YALG-VQFGVQGTPAIV-LSNGT--LV--PG-YQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHh-HHHH-HHcCCccccEEE-EcCCe--Ee--eC-CCCHHHHHHHHHHc
Confidence 11112 5677 899999999998 66776 33 34 68999999999875
No 238
>PRK05370 argininosuccinate synthase; Validated
Probab=97.54 E-value=0.00083 Score=67.21 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=85.2
Q ss_pred CCcEEEEechhHHHHH-HHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCC-cEEEEccCchHHHHHH---HhcCC
Q 042284 73 GNDIAIAFSGAEDVVL-IEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGI-RIEYTFPNAVEVQALV---RTKGL 147 (430)
Q Consensus 73 ~~~i~vs~SGGKDS~v-l~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl-~i~~~~p~~~~~~~~~---~~~g~ 147 (430)
+++|+++||||=|+.+ +..+.+.+.++..+++|+|-.-.+-++.+++-+..+|. ++.++.-.....++++ .....
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI~anA~ 90 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAIQCGAF 90 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHHHcCCc
Confidence 4679999999999755 45565557788999999995323446778888889998 4655533222222222 11111
Q ss_pred --------CCCCccchhhhhhhhchHHHHHHHh--cCceEEEeee---ccCCcccccCCCeeeecCCCCcccCCCCCeEE
Q 042284 148 --------FSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQR---KDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVK 214 (430)
Q Consensus 148 --------~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R---~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~ 214 (430)
.+....-.|. +=..-+-+..+ +.+++.-|-. .|| -|-.+.+.-.. |..-.
T Consensus 91 Y~~~~e~~Y~l~t~LaRp----lia~~lv~~A~~~ga~aIAHG~TGKGNDQ---vRFE~~~~aL~----------P~l~V 153 (447)
T PRK05370 91 HISTGGVTYFNTTPLGRA----VTGTMLVAAMKEDGVNIWGDGSTYKGNDI---ERFYRYGLLTN----------PELKI 153 (447)
T ss_pred cccccCccccCCCcchHH----HHHHHHHHHHHHhCCcEEEEcCCCCCCch---HHHHHHHHHhC----------CCCeE
Confidence 1110011111 11111111122 5567765542 222 23333222223 34567
Q ss_pred Eeccccc-------chHHHHHHHHHcCCCCc
Q 042284 215 WNPLANV-------KGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 215 ~~Pi~dW-------t~~dVw~yi~~~~lp~~ 238 (430)
+.|.-+| +.+|.-+|+++||||+.
T Consensus 154 iaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~ 184 (447)
T PRK05370 154 YKPWLDQDFIDELGGRAEMSEFLIAHGFDYK 184 (447)
T ss_pred ecchhhhhcccccCCHHHHHHHHHHcCCCCC
Confidence 8999988 67899999999999985
No 239
>PRK13981 NAD synthetase; Provisional
Probab=97.54 E-value=0.0014 Score=69.03 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=89.0
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHhc-CC-CcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCc--h
Q 042284 63 EIMDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKLT-GR-PFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNA--V 136 (430)
Q Consensus 63 ~~i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~~-~~-~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~--~ 136 (430)
..|+..+++.+ ++++|++|||-||+++ .|+.++ ++ ++..+++.+....+++++-++++++.+|++++++.-.. .
T Consensus 269 ~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~ 348 (540)
T PRK13981 269 LGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFE 348 (540)
T ss_pred HHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEECHHHHH
Confidence 34555555654 5699999999999776 666665 53 57778888877778899999999999999987663222 2
Q ss_pred HHHHHHHhcCCCCCCccchhhhhhh---hchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeE
Q 042284 137 EVQALVRTKGLFSFYEDGHQECCRI---RKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLV 213 (430)
Q Consensus 137 ~~~~~~~~~g~~~~~~~~~~~cc~~---~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~ 213 (430)
.+...+... ... ...+. ..+.+ .+..-+..........+.|+ +++.... +..-..|+ .+.-
T Consensus 349 ~~~~~~~~~-~~~-~~~~~-~~~N~~ar~R~~~l~~~a~~~~~lvlgt------~n~sE~~-~Gy~t~~G------D~~~ 412 (540)
T PRK13981 349 AFEAALAPL-FAG-TEPDI-TEENLQSRIRGTLLMALSNKFGSLVLTT------GNKSEMA-VGYATLYG------DMAG 412 (540)
T ss_pred HHHHHhhhh-hcC-CCCCc-hHHHHHHHHHHHHHHHHHhccCCEEEeC------CccCHHH-cCCeEecC------Cccc
Confidence 222222110 000 00011 11111 11222223333344455554 1332221 11111111 1234
Q ss_pred EEecccccchHHHHHHHHHcC
Q 042284 214 KWNPLANVKGQDIWNFLRAMN 234 (430)
Q Consensus 214 ~~~Pi~dWt~~dVw~yi~~~~ 234 (430)
-++||.|..+.+|+...+..+
T Consensus 413 ~~~pi~~l~K~~v~~la~~~~ 433 (540)
T PRK13981 413 GFAPIKDVYKTLVYRLCRWRN 433 (540)
T ss_pred CccccCCCCHHHHHHHHHHHH
Confidence 689999999999999888766
No 240
>PRK13189 peroxiredoxin; Provisional
Probab=97.53 E-value=0.00054 Score=63.49 Aligned_cols=92 Identities=15% Similarity=0.258 Sum_probs=65.1
Q ss_pred CCC-cEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC--------------------------chHHHHH
Q 042284 337 RED-PWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD--------------------------HKEFAKQ 389 (430)
Q Consensus 337 ~~k-~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~--------------------------~~~l~~~ 389 (430)
.++ .+|+.|+++||+.|....+.|.+++++++..++.++.|.+|.. +..++ +
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia-~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA-K 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH-H
Confidence 355 4555778999999999999999999999766688888766532 13456 7
Q ss_pred hCCCC-------CCCEEEEEeCCCcc-eeecC--CCCCCHHHHHHHHHHh
Q 042284 390 KLQLV-------SFPTILFFPKHSAK-PVKYP--SEKRDVDSLMAFVNAL 429 (430)
Q Consensus 390 ~~~V~-------~~Ptl~~~~~g~~~-~~~~~--gg~~~~~~l~~~i~~~ 429 (430)
.|++. .+|+++++++.+.+ ...+. ...++.+++...|+.+
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78875 46889999755432 12221 1237889999988765
No 241
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.53 E-value=0.0011 Score=71.59 Aligned_cols=144 Identities=15% Similarity=0.089 Sum_probs=85.4
Q ss_pred CcEEEEechhHHHHHH-HHHHhc----C---CCcEEEEecCCC-CCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHh
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLT----G---RPFRVFSLDTGR-LNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRT 144 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~----~---~~i~vi~~DTg~-~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~ 144 (430)
++++|+.|||+||+|+ .++.++ + .++..+++ .+. -.+++.+.++++++.+|++++++.-... +......
T Consensus 362 ~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m-p~~~ss~~s~~~a~~la~~LGi~~~~i~I~~~-~~~~~~~ 439 (679)
T PRK02628 362 KKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM-PGFATTDRTKNNAVALMKALGVTAREIDIRPA-ALQMLKD 439 (679)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC-CCCCCCHHHHHHHHHHHHHhCCeEEEEEcHHH-HHHHHHH
Confidence 6799999999999764 555544 3 35667777 444 4579999999999999999977743322 2222222
Q ss_pred cCCCCCC------ccchhhhhhhhchHHHHHHHhcCc--eEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEe
Q 042284 145 KGLFSFY------EDGHQECCRIRKVRPLKRALKGLR--AWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWN 216 (430)
Q Consensus 145 ~g~~~~~------~~~~~~cc~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~ 216 (430)
-+.+ +. .-....-|...+..-|........ ++-|| .++|.. .......-.| ..--+.
T Consensus 440 l~~~-~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~--~Gy~T~~~GD-----------~~~~~~ 504 (679)
T PRK02628 440 IGHP-FARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELA--LGWCTYGVGD-----------HMSHYN 504 (679)
T ss_pred hccc-cccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHH--hCceecCCCC-----------cccccc
Confidence 1111 10 001112266666666665555443 55566 344431 1111110011 233689
Q ss_pred cccccchHHHHHHHHHcC
Q 042284 217 PLANVKGQDIWNFLRAMN 234 (430)
Q Consensus 217 Pi~dWt~~dVw~yi~~~~ 234 (430)
||.+..+.+|+..++..+
T Consensus 505 ~~~~l~Kt~v~~l~~~~~ 522 (679)
T PRK02628 505 VNASVPKTLIQHLIRWVI 522 (679)
T ss_pred cccCCcHHHHHHHHHHHH
Confidence 999999999999988764
No 242
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.52 E-value=0.0007 Score=62.41 Aligned_cols=92 Identities=13% Similarity=0.291 Sum_probs=65.7
Q ss_pred CCcEE-EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC--------------------------chHHHHHh
Q 042284 338 EDPWL-IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD--------------------------HKEFAKQK 390 (430)
Q Consensus 338 ~k~vl-V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~--------------------------~~~l~~~~ 390 (430)
++.++ +.|+++||+.|....+.|.+++++++..++.++.|++|.. +..++ +.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia-~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA-KR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH-HH
Confidence 45555 4788999999999999999999999765788888877643 13455 67
Q ss_pred CCCC-------CCCEEEEEeCCCcceee--cC-CCCCCHHHHHHHHHHhC
Q 042284 391 LQLV-------SFPTILFFPKHSAKPVK--YP-SEKRDVDSLMAFVNALR 430 (430)
Q Consensus 391 ~~V~-------~~Ptl~~~~~g~~~~~~--~~-gg~~~~~~l~~~i~~~~ 430 (430)
|++. ..|++++++..+.+... +. .-.++.+++...|+.++
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 7763 36889999755543221 11 11379999999988763
No 243
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.51 E-value=0.00049 Score=72.72 Aligned_cols=94 Identities=13% Similarity=0.239 Sum_probs=71.8
Q ss_pred ceEcccchHHHHHHhcCCCCcEEE-EEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCE
Q 042284 320 LVSFRRTGIENLARLQNREDPWLI-VLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPT 398 (430)
Q Consensus 320 v~~lt~~~f~~~i~~~~~~k~vlV-~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Pt 398 (430)
-..|+.+..+.+.. -++++-| .|.+++|++|......+++++...++ +..-.||.... ++++ ++|+|.++|+
T Consensus 460 ~~~l~~~~~~~i~~---~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~--i~~~~i~~~~~-~~~~-~~~~v~~vP~ 532 (555)
T TIGR03143 460 GQPLGEELLEKIKK---ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN--VEAEMIDVSHF-PDLK-DEYGIMSVPA 532 (555)
T ss_pred CCCCCHHHHHHHHh---cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC--ceEEEEECccc-HHHH-HhCCceecCE
Confidence 33444444444332 3566645 45799999999999999999988764 89999999999 9999 9999999999
Q ss_pred EEEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 399 ILFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 399 l~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
+++ ||+ ..+.| ..+.++|.++|
T Consensus 533 ~~i--~~~---~~~~G-~~~~~~~~~~~ 554 (555)
T TIGR03143 533 IVV--DDQ---QVYFG-KKTIEEMLELI 554 (555)
T ss_pred EEE--CCE---EEEee-CCCHHHHHHhh
Confidence 876 565 33446 56899998876
No 244
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.49 E-value=0.00063 Score=71.29 Aligned_cols=93 Identities=10% Similarity=0.144 Sum_probs=70.7
Q ss_pred EcccchHHHHHHhcCCCCc-EEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEE
Q 042284 322 SFRRTGIENLARLQNREDP-WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400 (430)
Q Consensus 322 ~lt~~~f~~~i~~~~~~k~-vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~ 400 (430)
.|+++..+.+.+ -+++ -+-.|+++.|++|......+++++...+ ++.+-.||..++ ++++ ++|+|.++|+++
T Consensus 102 ~l~~~~~~~i~~---~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~-~~~~-~~~~v~~VP~~~ 174 (517)
T PRK15317 102 KLDQEVIEQIKA---LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALF-QDEV-EARNIMAVPTVF 174 (517)
T ss_pred CCCHHHHHHHHh---cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhC-HhHH-HhcCCcccCEEE
Confidence 344444444332 2344 4778999999999999999999998765 499999999999 9999 999999999996
Q ss_pred EEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 401 FFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 401 ~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
+ +|+ ..+.| ..+.++|.+.+.
T Consensus 175 i--~~~---~~~~g-~~~~~~~~~~~~ 195 (517)
T PRK15317 175 L--NGE---EFGQG-RMTLEEILAKLD 195 (517)
T ss_pred E--CCc---EEEec-CCCHHHHHHHHh
Confidence 5 555 23445 577888887765
No 245
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.47 E-value=0.00018 Score=64.50 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=38.6
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRAD 380 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~ 380 (430)
.++++||.|||+||++|++ .|.|+++.++|++.++.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4789999999999999975 889999999998767999999885
No 246
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.46 E-value=0.00057 Score=53.32 Aligned_cols=74 Identities=11% Similarity=0.260 Sum_probs=51.5
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc---hHHHHHhCC--CCCCCEEEEEeCCCcceeecCCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH---KEFAKQKLQ--LVSFPTILFFPKHSAKPVKYPSEK 416 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~---~~l~~~~~~--V~~~Ptl~~~~~g~~~~~~~~gg~ 416 (430)
++.|..+||++|++.+..|+++...+.+ +.+..+|++.+. .++. ...+ +..+|++++ +|+ . .||
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~--i~~~~idi~~~~~~~~~l~-~~~g~~~~tVP~ifi--~g~--~---igG- 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD--FEFRYIDIHAEGISKADLE-KTVGKPVETVPQIFV--DEK--H---VGG- 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC--CcEEEEECCCCHHHHHHHH-HHhCCCCCCcCeEEE--CCE--E---ecC-
Confidence 5779999999999999999888755543 778888887541 2454 4555 379999843 554 2 243
Q ss_pred CCHHHHHHHHHH
Q 042284 417 RDVDSLMAFVNA 428 (430)
Q Consensus 417 ~~~~~l~~~i~~ 428 (430)
.++|.+++++
T Consensus 71 --~~dl~~~~~~ 80 (86)
T TIGR02183 71 --CTDFEQLVKE 80 (86)
T ss_pred --HHHHHHHHHh
Confidence 4677777654
No 247
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.0032 Score=58.78 Aligned_cols=174 Identities=16% Similarity=0.236 Sum_probs=100.7
Q ss_pred HHHHHHHcC-CcEEEEechhHHHHHH-HHHHhc-CCCcEEEEecCCCC-CHHHHHHHHHHHHHhCCcEEEEccCchHHHH
Q 042284 65 MDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKLT-GRPFRVFSLDTGRL-NPETHQFFDTVEKHYGIRIEYTFPNAVEVQA 140 (430)
Q Consensus 65 i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~~-~~~i~vi~~DTg~~-fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~ 140 (430)
++.+-++.+ .++.++.|||-||.++ .|+.++ +.....+|+|+|.. --|..+.++-+.+.+|++++.+..... |-.
T Consensus 12 i~~ir~~vg~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl~~VdA~~~-Fl~ 90 (315)
T COG0519 12 IEEIREQVGDGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNLIVVDAKDR-FLS 90 (315)
T ss_pred HHHHHHHhCCceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCcccCCcHHHHHHHHHhhcCCceEEEchHHH-HHH
Confidence 333334444 6799999999999776 556554 77789999999976 357777778888889999988744322 222
Q ss_pred HHHhcCCCCCCccchhhhhhhhchHHHHHHHhc--CceEEEeeeccC---CcccccCCCeeeecCCCCcccCCCCCeE--
Q 042284 141 LVRTKGLFSFYEDGHQECCRIRKVRPLKRALKG--LRAWITGQRKDQ---SPGTRAEIPVVQIDTSFEGIDGGKGSLV-- 213 (430)
Q Consensus 141 ~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~--~~~~i~G~R~~E---s~~~R~~~~~~~~d~~~~~~~~~~~~~~-- 213 (430)
.+ .|... ++ ..|.--+..=++-+.+..+. .+..+-|+=.-| |. .... ..+...-+- +|-|..+
T Consensus 91 ~L--~GvtD-PE-~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~-~g~~-~~IKSHHNV----GGLP~~m~l 160 (315)
T COG0519 91 AL--KGVTD-PE-EKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESG-TGKA-GTIKSHHNV----GGLPEDMKL 160 (315)
T ss_pred Hh--cCCCC-HH-HHHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeec-CCCC-Ccccccccc----CCCccccce
Confidence 11 22210 00 01111111122333333332 234444543322 21 1111 111111111 1222222
Q ss_pred -EEecccccchHHHHHHHHHcCCCCccccccCCcccC
Q 042284 214 -KWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIG 249 (430)
Q Consensus 214 -~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siG 249 (430)
-+-||-+.-+++|...-++.|||..-+|.+-|+--|
T Consensus 161 kLvEPLr~LfKDEVR~lg~~LGlp~~iv~RhPFPGPG 197 (315)
T COG0519 161 KLVEPLRELFKDEVRELGRELGLPEEIVYRHPFPGPG 197 (315)
T ss_pred eeeHHHHHHhHHHHHHHHHHhCCCHHHhccCCCCCCC
Confidence 368999999999999999999999999998887655
No 248
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.36 E-value=0.0014 Score=57.92 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=82.9
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCC
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~P 397 (430)
..|..++...|...+..+..+-.|+|..|...-+.|.-+...++.++..|+. ++|+++=.+.. . ..|-=...|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~c----I-pNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTC----I-PNYPESNLP 163 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccc----c-CCCcccCCC
Confidence 5799999999999888788888999999999999999999999999999997 89998854432 1 245557899
Q ss_pred EEEEEeCCCcc-----eeecCCCCCCHHHHHHHHHH
Q 042284 398 TILFFPKHSAK-----PVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 398 tl~~~~~g~~~-----~~~~~gg~~~~~~l~~~i~~ 428 (430)
|+++|..|..+ +..+.|-..+.+++..++-+
T Consensus 164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 99999998642 33344445678888877643
No 249
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.34 E-value=0.0016 Score=59.32 Aligned_cols=92 Identities=10% Similarity=0.244 Sum_probs=66.5
Q ss_pred CCCcEEEEEeC-CCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---------------------------chHHHH
Q 042284 337 REDPWLIVLYA-PWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---------------------------HKEFAK 388 (430)
Q Consensus 337 ~~k~vlV~Fya-~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---------------------------~~~l~~ 388 (430)
.++.++|+||+ .||+.|....+.+.++++++...++.++.|+++.. +.+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia- 113 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA- 113 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH-
Confidence 36788999995 88999999999999999999876788888877632 13466
Q ss_pred HhCCCC------CCCEEEEEeCCCcceeecC---CCCCCHHHHHHHHHHh
Q 042284 389 QKLQLV------SFPTILFFPKHSAKPVKYP---SEKRDVDSLMAFVNAL 429 (430)
Q Consensus 389 ~~~~V~------~~Ptl~~~~~g~~~~~~~~---gg~~~~~~l~~~i~~~ 429 (430)
+.|++. .+|+.+++++.+....... ...++.+++.+.|+.+
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 788875 4689999976553222111 1236788888888754
No 250
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.29 E-value=0.0011 Score=47.83 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=40.9
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHH---HHhCCCCCCCEEEEEeCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFA---KQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~---~~~~~V~~~Ptl~~~~~g~ 406 (430)
++.|..++|++|+..+..|++. ++.+-.+|++.. ++.. .+..+..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-------~i~y~~~dv~~~-~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-------GIPYEEVDVDED-EEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-------TBEEEEEEGGGS-HHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-------CCeeeEcccccc-hhHHHHHHHHcCCCccCEEEE--CCE
Confidence 5779999999999999877432 478888898887 3332 03348999999876 554
No 251
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.24 E-value=0.00073 Score=52.08 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=57.3
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcc--eeecCCCCCCH
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAK--PVKYPSEKRDV 419 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~--~~~~~gg~~~~ 419 (430)
|++|..+.|+-|..+...++++.... .+.+-.||++++ +++. .+|+. .+|.+.+=..++.. ...+ +..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d-~~l~-~~Y~~-~IPVl~~~~~~~~~~~~~~~--~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDED-PELF-EKYGY-RIPVLHIDGIRQFKEQEELK--WRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTT-HHHH-HHSCT-STSEEEETT-GGGCTSEEEE--SSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCC-HHHH-HHhcC-CCCEEEEcCcccccccceeC--CCCCH
Confidence 67899999999999999888875444 489999999988 8999 89995 89986653211111 2222 36899
Q ss_pred HHHHHHHH
Q 042284 420 DSLMAFVN 427 (430)
Q Consensus 420 ~~l~~~i~ 427 (430)
+.|.+||+
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999985
No 252
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.24 E-value=0.0022 Score=51.58 Aligned_cols=95 Identities=12% Similarity=0.144 Sum_probs=64.2
Q ss_pred ccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---chHHHHHhCCCC-CCCEE
Q 042284 324 RRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---HKEFAKQKLQLV-SFPTI 399 (430)
Q Consensus 324 t~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---~~~l~~~~~~V~-~~Ptl 399 (430)
+.++++++++ .+.+++++|+=.++.|+-.......|++......+ .+.++.+|+-++ ...++ .+|+|. .-|.+
T Consensus 6 t~eql~~i~~-~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~R~vSn~IA-e~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILE-ESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEYRPVSNAIA-EDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHH-H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHH-HHHT----SSEE
T ss_pred CHHHHHHHHH-hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeCchhHHHHH-HHhCCCcCCCcE
Confidence 3477888876 34588999888899999999999999999988877 599999999876 13567 899997 57999
Q ss_pred EEEeCCCcceeecCCCCCCHHHH
Q 042284 400 LFFPKHSAKPVKYPSEKRDVDSL 422 (430)
Q Consensus 400 ~~~~~g~~~~~~~~gg~~~~~~l 422 (430)
+++++|+.+.-.-. +.++.++|
T Consensus 83 ili~~g~~v~~aSH-~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASH-WDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEG-GG-SHHHH
T ss_pred EEEECCEEEEECcc-ccCCHHhc
Confidence 99999984322222 24666665
No 253
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.23 E-value=0.00069 Score=67.24 Aligned_cols=156 Identities=15% Similarity=0.229 Sum_probs=76.6
Q ss_pred EEEechhHHHHHH-HHHHhcC-CCcEEEEecCCCCCHHHHHHHHHHHHHhCC-cEEEEccCchHHHHH----HHhc----
Q 042284 77 AIAFSGAEDVVLI-EYAKLTG-RPFRVFSLDTGRLNPETHQFFDTVEKHYGI-RIEYTFPNAVEVQAL----VRTK---- 145 (430)
Q Consensus 77 ~vs~SGGKDS~vl-~l~~~~~-~~i~vi~~DTg~~fpet~~~~~~~~~~~gl-~i~~~~p~~~~~~~~----~~~~---- 145 (430)
+++||||=|+.++ .++.+.+ .++..+++|+|-. .+-.+-+++-+..+|. +++++.-.....+++ +...
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~-~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Ye 79 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQP-DEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYE 79 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST--S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BT
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCc-HHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhC
Confidence 5899999997655 5566555 7889999999984 3666778888899997 777664332222122 1111
Q ss_pred CCCCCCccchhhhhhhhchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEeccccc--ch
Q 042284 146 GLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANV--KG 223 (430)
Q Consensus 146 g~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dW--t~ 223 (430)
|..++...-.|. +-..+...+.+. .+.+++.-|-..-.....|-.+.+...+| ..-.+.|.-+| +.
T Consensus 80 g~YpL~tsl~Rp-lIa~~~v~~A~~-~ga~~vaHG~TgkGNDqvRFe~~~~al~P----------~l~viaP~Rd~~~~R 147 (388)
T PF00764_consen 80 GRYPLSTSLARP-LIAKKLVEVARE-EGADAVAHGCTGKGNDQVRFELSIRALAP----------ELKVIAPWRDWEFSR 147 (388)
T ss_dssp TTB--CCCCHHH-HHHHHHHHHHHH-HT-SEEE----TTSSHHHHHHHHHHHHST----------TSEEE-GGGHHHHHH
T ss_pred CCccccccchHH-HHHHHHHHHHHH-cCCeEEeccCCcCCCchhHHHHHHHHhCc----------CCcEecccchhhhhH
Confidence 111111111121 111222222111 15567776643322211343333323343 45678999887 78
Q ss_pred HHHHHHHHHcCCCCccccccCC
Q 042284 224 QDIWNFLRAMNIPINSLHSQGY 245 (430)
Q Consensus 224 ~dVw~yi~~~~lp~~pLY~~Gy 245 (430)
+|..+|+++||||+..--+.-|
T Consensus 148 ~~~i~ya~~~gIpv~~~~~~~y 169 (388)
T PF00764_consen 148 EEEIEYAKKHGIPVPVTKKKPY 169 (388)
T ss_dssp HHHHHHHHHTT----SS---SS
T ss_pred HHHHHHHHHcCCCCCCCCCCCC
Confidence 8999999999999865433334
No 254
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=97.22 E-value=0.0017 Score=59.80 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=73.3
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEE-EEe--cCC-CC-C-HHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRV-FSL--DTG-RL-N-PETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGL 147 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~v-i~~--DTg-~~-f-pet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 147 (430)
+++++|||||||+.. +.+.+. .++.. +++ .+. .. | .-..++++..++.+|+++..+.....
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~----------- 69 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT----------- 69 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC-----------
Confidence 377899999999775 555555 54432 222 221 11 1 12347889999999999865321111
Q ss_pred CCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccccchHH
Q 042284 148 FSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQD 225 (430)
Q Consensus 148 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~d 225 (430)
....++.|.++++ +.+++++|--..+. +|.....+-.. -++.-+.||..-...+
T Consensus 70 ------------~e~~~e~l~~~l~~~gv~~vv~GdI~s~~--qr~~~e~v~~~----------lgl~~~~PLW~~~~~~ 125 (223)
T TIGR00290 70 ------------EEDEVEELKGILHTLDVEAVVFGAIYSEY--QKTRIERVCRE----------LGLKSFAPLWHRDPEK 125 (223)
T ss_pred ------------ccHHHHHHHHHHHHcCCCEEEECCcccHH--HHHHHHHHHHh----------cCCEEeccccCCCHHH
Confidence 1134455555554 56788899877765 33333221111 2577889998887777
Q ss_pred HHHHHHHcCC
Q 042284 226 IWNFLRAMNI 235 (430)
Q Consensus 226 Vw~yi~~~~l 235 (430)
+..=+...|+
T Consensus 126 ll~e~i~~G~ 135 (223)
T TIGR00290 126 LMEEFVEEKF 135 (223)
T ss_pred HHHHHHHcCC
Confidence 6655545443
No 255
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.20 E-value=0.001 Score=60.50 Aligned_cols=77 Identities=21% Similarity=0.360 Sum_probs=53.5
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEE---------------------------------------
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKF--------------------------------------- 377 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~V--------------------------------------- 377 (430)
..+..++.|+.+.|++|+++.+.+.+ ..+ ++.+..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NAD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 46789999999999999999998875 111 2222221
Q ss_pred ------EcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 378 ------RADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 378 ------d~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
+++++ ..++ ++++|+++|+++ |.+|+ . ..| ..+.++|.++|
T Consensus 151 ~~~~~~~i~~~-~~l~-~~~gi~gtPtii-~~~G~--~--~~G-~~~~~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAAN-LALG-RQLGVNGTPTIV-LADGR--V--VPG-APPAAQLEALL 197 (197)
T ss_pred ccccCchHHHH-HHHH-HHcCCCcccEEE-ECCCe--E--ecC-CCCHHHHHhhC
Confidence 11122 5677 899999999997 77776 2 334 57788887764
No 256
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.18 E-value=0.0011 Score=50.72 Aligned_cols=57 Identities=16% Similarity=0.316 Sum_probs=41.7
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc----hHHHHHhCCCCCCCEEEEEeCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH----KEFAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~----~~l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
++.|+++||++|+.+.+.++++.. .+.++.+|.+.+. ..+. +..++.++|++ |.+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~-~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQ-ELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHH-HHhCCCCCCeE--EECCE
Confidence 477999999999999999988754 2567777776541 1344 55688899996 44665
No 257
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.16 E-value=0.0026 Score=66.60 Aligned_cols=95 Identities=9% Similarity=0.111 Sum_probs=70.9
Q ss_pred eEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEE
Q 042284 321 VSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400 (430)
Q Consensus 321 ~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~ 400 (430)
..|+++..+.+.+ . .+..-+-.|+++.|++|......+++++...++ +..-.+|..++ ++++ ++|+|.++|+++
T Consensus 102 ~~l~~~~~~~~~~-~-~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~--i~~~~id~~~~-~~~~-~~~~v~~VP~~~ 175 (515)
T TIGR03140 102 PKLDEGIIDRIRR-L-NGPLHFETYVSLTCQNCPDVVQALNQMALLNPN--ISHTMIDGALF-QDEV-EALGIQGVPAVF 175 (515)
T ss_pred CCCCHHHHHHHHh-c-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC--ceEEEEEchhC-HHHH-HhcCCcccCEEE
Confidence 3445454444432 2 233447779999999999999999999988764 88888999999 9999 999999999997
Q ss_pred EEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 401 FFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 401 ~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
+ +|+ ..+.| ..+.++|.+.+.
T Consensus 176 i--~~~---~~~~g-~~~~~~~~~~l~ 196 (515)
T TIGR03140 176 L--NGE---EFHNG-RMDLAELLEKLE 196 (515)
T ss_pred E--CCc---EEEec-CCCHHHHHHHHh
Confidence 6 554 23445 577777776664
No 258
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.07 E-value=0.0018 Score=57.89 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=81.3
Q ss_pred CCceEccc-chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCC
Q 042284 318 QKLVSFRR-TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSF 396 (430)
Q Consensus 318 ~~v~~lt~-~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~ 396 (430)
..|++++. +.|-+.+...-+.-.++|..|-+.-+-|.++...+.-||.+|+- ++|++|-...- ... .+|....+
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~--vKFckikss~~--gas-~~F~~n~l 212 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI--VKFCKIKSSNT--GAS-DRFSLNVL 212 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc--eeEEEeeeccc--cch-hhhcccCC
Confidence 46888864 77888776333445788999999999999999999999999986 99999865533 334 78999999
Q ss_pred CEEEEEeCCCcc-----eeecCCCCCCHHHHHHHHHHh
Q 042284 397 PTILFFPKHSAK-----PVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 397 Ptl~~~~~g~~~-----~~~~~gg~~~~~~l~~~i~~~ 429 (430)
||+++|++|+.+ .....|......++.+||++.
T Consensus 213 P~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 213 PTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred ceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999999999842 112223346677788888753
No 259
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.01 E-value=0.0059 Score=56.22 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=48.9
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEE
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKF 377 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~V 377 (430)
+.|+.+++++...+.+-.+.++|+++.|.+-.||+-..-.+.|++++++|.+ .+.|+.|
T Consensus 82 s~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~V 140 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIV 140 (237)
T ss_pred CceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehh
Confidence 5789998888666666566899999999999999999999999999999987 3444444
No 260
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=97.01 E-value=0.0048 Score=57.86 Aligned_cols=120 Identities=20% Similarity=0.273 Sum_probs=68.8
Q ss_pred HHHHHHHHHH---cCCcEEEEechhHHHHHH-HHHHh-cCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCch
Q 042284 62 LEIMDKAFQK---FGNDIAIAFSGAEDVVLI-EYAKL-TGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAV 136 (430)
Q Consensus 62 ~~~i~~~~~~---~~~~i~vs~SGGKDS~vl-~l~~~-~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~ 136 (430)
.+.++.++++ ...++.+.+|||-||.++ .++.+ .+.++..+.++.+.....-..+++++++.+|++++.+.....
T Consensus 3 r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~~ 82 (255)
T PF00733_consen 3 RELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDPE 82 (255)
T ss_dssp HHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-HH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHHHhcccccccceeeechh
Confidence 3556666655 246799999999999766 66666 567888999988887765668899999999999877665554
Q ss_pred HHHH----HHHhcCCCCCCccchhhhhhhhchHHHHHHH--hcCceEEEeeeccCC
Q 042284 137 EVQA----LVRTKGLFSFYEDGHQECCRIRKVRPLKRAL--KGLRAWITGQRKDQS 186 (430)
Q Consensus 137 ~~~~----~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~--~~~~~~i~G~R~~Es 186 (430)
.+.. .....+.|. ....+.. .-..-+.+.. .+.+++++|.-.||-
T Consensus 83 ~~~~~~~~~~~~~~~p~----~~~~~~~-~~~~~~~~~a~~~~~~~~ltG~GgDel 133 (255)
T PF00733_consen 83 DLLDNLEDIIWRLDGPS----PLDDPNS-LPLYLLARLARENGIRVLLTGQGGDEL 133 (255)
T ss_dssp HHHHHHHHHHHHHT-------HHHHHHH-HHHHHHHHHHCHTTBSEEE--TTHHHH
T ss_pred hHHHhHHHHHHHHhCCc----ccccccc-cHHHHHHHhhcccceeEEEeccccccc
Confidence 3322 222222111 0001111 1111122233 367899999888875
No 261
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=96.98 E-value=0.0058 Score=60.50 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=91.5
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEec-CCCCCHHHHHHHHHHH-HHh---CCcEEEEccCchHHHHHHHhcCCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLD-TGRLNPETHQFFDTVE-KHY---GIRIEYTFPNAVEVQALVRTKGLF 148 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~D-Tg~~fpet~~~~~~~~-~~~---gl~i~~~~p~~~~~~~~~~~~g~~ 148 (430)
++++..|||-||-|. .|+.+.|.++..+|.+ .+..-++..+-+..+. .++ +.++..+.-+.....+.+....
T Consensus 177 k~l~LlSGGIDSPVA~~l~mkRG~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~-- 254 (383)
T COG0301 177 KVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKV-- 254 (383)
T ss_pred cEEEEEeCCCChHHHHHHHHhcCCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhc--
Confidence 688889999999766 8888899888877774 4556677766666666 444 3344333333333444333322
Q ss_pred CCCccchhhhhhhhchHHHHHHHh-----cCceEEEeeeccCCcc-cccCCCeeeecCCCCcccCCCCCeEEEecccccc
Q 042284 149 SFYEDGHQECCRIRKVRPLKRALK-----GLRAWITGQRKDQSPG-TRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVK 222 (430)
Q Consensus 149 ~~~~~~~~~cc~~~K~~pl~~~~~-----~~~~~i~G~R~~Es~~-~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt 222 (430)
...+-|-++|+.-++.+-+ +..+++||-.-.|=.+ +=.++..++.- -+..-++||+.|.
T Consensus 255 -----~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~nL~~i~~~----------t~~pIlRPLI~~D 319 (383)
T COG0301 255 -----PESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLENLRVIDSV----------TNTPVLRPLIGLD 319 (383)
T ss_pred -----CccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHHHHHHHHHhc----------cCCceeccccCCC
Confidence 2334566677766665553 6679999966555210 11222222111 1456899999999
Q ss_pred hHHHHHHHHHcCC
Q 042284 223 GQDIWNFLRAMNI 235 (430)
Q Consensus 223 ~~dVw~yi~~~~l 235 (430)
++||-+..++-|.
T Consensus 320 K~eIi~~Ar~IgT 332 (383)
T COG0301 320 KEEIIEIARRIGT 332 (383)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999885
No 262
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.94 E-value=0.0089 Score=47.11 Aligned_cols=95 Identities=13% Similarity=0.220 Sum_probs=71.1
Q ss_pred chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC-chHHHHHhCCCC----CCC-EE
Q 042284 326 TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD-HKEFAKQKLQLV----SFP-TI 399 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~-~~~l~~~~~~V~----~~P-tl 399 (430)
.+|..++. ..+.|+|.|..+--..-. ....+.++|+..++ .-.++.|||... ...|| +++.|. --| ++
T Consensus 10 KdfKKLLR---Tr~NVLvLy~ks~k~a~~-~Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLC-KKlKv~~~~kp~~~~L 83 (112)
T cd03067 10 KDFKKLLR---TRNNVLVLYSKSAKSAEA-LLKLLSDVAQAVKG-QGTIAWIDCGDSESRKLC-KKLKVDPSSKPKPVEL 83 (112)
T ss_pred HHHHHHHh---hcCcEEEEEecchhhHHH-HHHHHHHHHHHhcC-ceeEEEEecCChHHHHHH-HHHccCCCCCCCcchh
Confidence 67788776 777899988876544433 34488999999998 678999999872 27899 999998 445 47
Q ss_pred EEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 400 LFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 400 ~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
..|++|.- .-.|.- ..+...|+.|++.
T Consensus 84 kHYKdG~f-HkdYdR-~~t~kSmv~FlrD 110 (112)
T cd03067 84 KHYKDGDF-HTEYNR-QLTFKSMVAFLRD 110 (112)
T ss_pred hcccCCCc-cccccc-hhhHHHHHHHhhC
Confidence 77888874 445554 5788999999863
No 263
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.91 E-value=0.011 Score=45.39 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=49.8
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHH--HhCCCCCCCEEEEEeCCCcceeecCCCCCCH
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK--QKLQLVSFPTILFFPKHSAKPVKYPSEKRDV 419 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~--~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~ 419 (430)
++.|..+||++|+..+..|++ . ++.|-.+|++++ ++... +..+...+|++++ ++. ...| .+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~--gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~----~~~G--f~~ 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----R--GFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDL----SWSG--FRP 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----C--CCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCE----EEec--CCH
Confidence 567899999999999988854 2 588889999887 55330 2346789999864 332 2224 678
Q ss_pred HHHHHHHH
Q 042284 420 DSLMAFVN 427 (430)
Q Consensus 420 ~~l~~~i~ 427 (430)
+.|.+++.
T Consensus 67 ~~l~~~~~ 74 (81)
T PRK10329 67 DMINRLHP 74 (81)
T ss_pred HHHHHHHH
Confidence 88888765
No 264
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=96.90 E-value=0.013 Score=55.62 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHhcCC------CcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEc-
Q 042284 62 LEIMDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKLTGR------PFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTF- 132 (430)
Q Consensus 62 ~~~i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~~~~------~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~- 132 (430)
.+.|+.-+++.+ +.+++..|||-||++. .|+.++-. .+..+.+..+.--+.+.+-+..+.+.+|+....+.
T Consensus 13 ~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I 92 (268)
T COG0171 13 VDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINI 92 (268)
T ss_pred HHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHHHHhCCceEEEec
Confidence 345555555554 5699999999999775 66665532 15556655553356777888999999999864442
Q ss_pred -cCchHH-HHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhcCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCC
Q 042284 133 -PNAVEV-QALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKG 210 (430)
Q Consensus 133 -p~~~~~-~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~ 210 (430)
|....+ ..............-....-.....+.-+..+......++.|+ ++++... ..+-.+|+ .
T Consensus 93 ~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGT------gn~sE~~-~Gy~TkyG------D 159 (268)
T COG0171 93 KPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGT------GNKSELA-LGYFTKYG------D 159 (268)
T ss_pred HHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcC------CcHHHHh-cCceeccc------C
Confidence 222222 1111111000000000000001112222333333455666675 2443332 12222221 1
Q ss_pred CeEEEecccccchHHHHHHHHHcCCCCcc
Q 042284 211 SLVKWNPLANVKGQDIWNFLRAMNIPINS 239 (430)
Q Consensus 211 ~~~~~~Pi~dWt~~dVw~yi~~~~lp~~p 239 (430)
+-.-++||.+..+.+|++.++..++|-+=
T Consensus 160 g~~d~~Pi~~L~KtqV~~La~~l~ipe~I 188 (268)
T COG0171 160 GAVDINPIADLYKTQVYALARHLGIPEEI 188 (268)
T ss_pred cccChhhhcCCcHHHHHHHHHHcCCCHHH
Confidence 34579999999999999999977776543
No 265
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.85 E-value=0.003 Score=51.11 Aligned_cols=94 Identities=10% Similarity=0.133 Sum_probs=65.7
Q ss_pred CCceEcccchHHHHHHhcCCCCcEEEEEeCC--CCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCC
Q 042284 318 QKLVSFRRTGIENLARLQNREDPWLIVLYAP--WCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395 (430)
Q Consensus 318 ~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~--wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~ 395 (430)
.....++.+++++++. .....+++|..+ -++.+....=++-++.+.+++ .+..+.|+-... .++. .+|++..
T Consensus 9 ~g~~~vd~~~ld~~l~---~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e-~~L~-~r~gv~~ 82 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLA---APGDAVLFFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAE-RALA-ARFGVRR 82 (107)
T ss_dssp -TEEEE-CCCHHHHHH---CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHH-HHHH-HHHT-TS
T ss_pred cCCeeechhhHHHHHh---CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhH-HHHH-HHhCCcc
Confidence 3566788899999986 555555544432 245566666678888888888 777777885555 8999 9999999
Q ss_pred CCEEEEEeCCCcceeecCCCCCCH
Q 042284 396 FPTILFFPKHSAKPVKYPSEKRDV 419 (430)
Q Consensus 396 ~Ptl~~~~~g~~~~~~~~gg~~~~ 419 (430)
+|++++|++|+ ......|-++-
T Consensus 83 ~PaLvf~R~g~--~lG~i~gi~dW 104 (107)
T PF07449_consen 83 WPALVFFRDGR--YLGAIEGIRDW 104 (107)
T ss_dssp SSEEEEEETTE--EEEEEESSSTH
T ss_pred CCeEEEEECCE--EEEEecCeecc
Confidence 99999999998 45444334443
No 266
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.80 E-value=0.0035 Score=46.94 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=46.1
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHh---CCCCCCCEEEEEeCCCcceeecCCCCCCH
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQK---LQLVSFPTILFFPKHSAKPVKYPSEKRDV 419 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~---~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~ 419 (430)
..|..++|++|+..+..|++. ++.+-.+|++++ +... .. .+..++|++++ +|.. .. +| .+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~~di~~~-~~~~-~~~~~~g~~~vP~v~~--~g~~---~~-~G-~~~ 65 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-------GIAFEEINIDEQ-PEAI-DYVKAQGFRQVPVIVA--DGDL---SW-SG-FRP 65 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-------CCceEEEECCCC-HHHH-HHHHHcCCcccCEEEE--CCCc---EE-ec-cCH
Confidence 568899999999999888742 478888899887 5544 33 37789999754 4441 22 32 566
Q ss_pred HHHHH
Q 042284 420 DSLMA 424 (430)
Q Consensus 420 ~~l~~ 424 (430)
+.|.+
T Consensus 66 ~~~~~ 70 (72)
T TIGR02194 66 DKLKA 70 (72)
T ss_pred HHHHh
Confidence 76655
No 267
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.78 E-value=0.0053 Score=45.09 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=39.2
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHH---HHhCCCCCCCEEEEEeCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFA---KQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~---~~~~~V~~~Ptl~~~~~g~ 406 (430)
++.|+++||++|+.+.+.|++.. +.+..+|++.+ ++.. .+..+...+|+++ .+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDILED-GELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECCCC-HHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 46799999999999999887663 56778888876 4332 0344667888774 3554
No 268
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=96.76 E-value=0.0006 Score=64.81 Aligned_cols=159 Identities=16% Similarity=0.245 Sum_probs=99.3
Q ss_pred CCcEEEEechhHHHHHH-HHHH----hc--CCCcEEEEecCCCCC--HHHHHHHHHHHHHhCCcEEEEccCch----HHH
Q 042284 73 GNDIAIAFSGAEDVVLI-EYAK----LT--GRPFRVFSLDTGRLN--PETHQFFDTVEKHYGIRIEYTFPNAV----EVQ 139 (430)
Q Consensus 73 ~~~i~vs~SGGKDS~vl-~l~~----~~--~~~i~vi~~DTg~~f--pet~~~~~~~~~~~gl~i~~~~p~~~----~~~ 139 (430)
+.++++.-||||||||+ +.+. +. +....++-+|-|.-+ ...++.+++...+|++++.++.+... .+.
T Consensus 51 ge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~tmd 130 (347)
T KOG2840|consen 51 GERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEWTMD 130 (347)
T ss_pred CCccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccchHH
Confidence 35699999999999998 3322 22 334556788888753 46677789999999999988876532 122
Q ss_pred HHHHhcCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCeeeecC----CCCc--ccCCCC-
Q 042284 140 ALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDT----SFEG--IDGGKG- 210 (430)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~d~----~~~~--~~~~~~- 210 (430)
+.....|.. .++..-.|++.+...+.+... +..-..||+.+||-. .+-.+..+..|. +... +.+...
T Consensus 131 ~i~~~i~~~---~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~a-etvl~n~lrgds~rl~R~~~~~t~~~e~~ 206 (347)
T KOG2840|consen 131 EIVSEIGQE---IRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWA-ETVLMNLLRGDSARLERLTEITTPSLEMG 206 (347)
T ss_pred HHHHHHhhh---hhcCceeecHHHHHHHHhhccccchhhhhhcccchHHH-HHHHHHHHHhHHHHhhhccccccCccccC
Confidence 233333321 112222367777777777766 334678999999975 655444443221 1111 111122
Q ss_pred CeEEEecccccchHHHHHHHHHcCC
Q 042284 211 SLVKWNPLANVKGQDIWNFLRAMNI 235 (430)
Q Consensus 211 ~~~~~~Pi~dWt~~dVw~yi~~~~l 235 (430)
.+-+.+||-+=+..+|-.|-....|
T Consensus 207 ~~~r~kplk~~~~keivLya~~~~L 231 (347)
T KOG2840|consen 207 IIPRLKPLKYASEKEIVLYASLSKL 231 (347)
T ss_pred ccccccccccchhhehhhHHHHHHH
Confidence 3678899998888888887666533
No 269
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0074 Score=59.04 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=45.0
Q ss_pred CcEEEEechhHHH-HHHHHHH-hcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCc-EEEE
Q 042284 74 NDIAIAFSGAEDV-VLIEYAK-LTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIR-IEYT 131 (430)
Q Consensus 74 ~~i~vs~SGGKDS-~vl~l~~-~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~-i~~~ 131 (430)
++|++|||||=|. +.+.++. +.+-++..+++|.|-. .+-++.+++-+..+|.. ..++
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~-eed~~~i~eKA~~~Ga~~~~vi 64 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIREKALELGAEEAYVI 64 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCC-hHHhHHHHHHHHHhCCceEEEe
Confidence 5699999999995 5555444 4457888899999977 78889999999999975 4444
No 270
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=96.67 E-value=0.0085 Score=55.30 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=36.1
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCC-----C-HHHHHHHHHHHHHhCCcEEEEc
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRL-----N-PETHQFFDTVEKHYGIRIEYTF 132 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~-----f-pet~~~~~~~~~~~gl~i~~~~ 132 (430)
++++++||||||++. +.+.+. .++..++.=.... | -.-.+.++..++.+|++++.+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~ 65 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLY 65 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEE
Confidence 478999999999775 555554 4444332211111 1 1234778999999999986553
No 271
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=96.67 E-value=0.016 Score=59.93 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=65.3
Q ss_pred CcEEEEechhHHHHHH-HHHHhcCC--CcEEEEecCC--CCCHHHHHHHHHHHHHhCCcEEEEccCchHHH----HHHHh
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTGR--PFRVFSLDTG--RLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQ----ALVRT 144 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~~--~i~vi~~DTg--~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~----~~~~~ 144 (430)
.++.+.+|||.||.++ .++.+... ++..+.++.+ ..+.| ..+++++++++|++.+.+......+. ..+..
T Consensus 254 ~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~~E-~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~ 332 (467)
T TIGR01536 254 VPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDFDE-SPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYH 332 (467)
T ss_pred CceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCCCh-HHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHh
Confidence 4589999999999766 56665533 5777777775 34555 46999999999999877755443322 22222
Q ss_pred cCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCc
Q 042284 145 KGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSP 187 (430)
Q Consensus 145 ~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~ 187 (430)
.+.|. ..+ ...-...+.+..+ +.+++++|.-+||-.
T Consensus 333 ~~~p~------~~~-~~~~~~~l~~~a~~~G~~vlltG~GaDElf 370 (467)
T TIGR01536 333 LEDPT------TIR-ASIPLYLLSKLAREDGVKVVLSGEGADELF 370 (467)
T ss_pred hCCCC------CCc-hHHHHHHHHHHHHhcCCEEEEecCcchhcc
Confidence 22111 111 1122223333333 478999999999863
No 272
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.65 E-value=0.0065 Score=46.42 Aligned_cols=71 Identities=17% Similarity=0.330 Sum_probs=48.1
Q ss_pred CCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc--hHHHHHhCCCCCCCEEEEEeCCCcceeecCCC
Q 042284 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH--KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSE 415 (430)
Q Consensus 338 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~--~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg 415 (430)
++.-++.|+.+||++|++.+..|++. ++.+-.+|++++. .++. +..+...+|.+++ +|+ . .||
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~-~~~g~~~vP~i~i--~g~--~---igG 70 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLR-AVTGATTVPQVFI--GGK--L---IGG 70 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHH-HHHCCCCcCeEEE--CCE--E---EcC
Confidence 34456679999999999999888642 3667777876551 2344 4568899999853 565 2 232
Q ss_pred CCCHHHHHHHH
Q 042284 416 KRDVDSLMAFV 426 (430)
Q Consensus 416 ~~~~~~l~~~i 426 (430)
.++|.+||
T Consensus 71 ---~~~l~~~l 78 (79)
T TIGR02190 71 ---SDELEAYL 78 (79)
T ss_pred ---HHHHHHHh
Confidence 36677665
No 273
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.62 E-value=0.014 Score=55.20 Aligned_cols=85 Identities=14% Similarity=0.249 Sum_probs=56.6
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEc----------------C--------------------
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRA----------------D-------------------- 380 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~----------------~-------------------- 380 (430)
..+.+++.|.-+.|++|+++.+.+.++.+. + ++.+..+-. .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 467788999999999999999887766543 1 233332211 0
Q ss_pred C----C---------chHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 381 G----D---------HKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 381 ~----~---------~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
. . +..+. ++++|+++|++++-+..+ ......| ..+.++|.+.+.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~-~~lGv~GTPaiv~~d~~G-~~~~v~G-~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLM-DDLGANATPAIYYMDKDG-TLQQVVG-LPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHH-HHcCCCCCCEEEEECCCC-CEEEecC-CCCHHHHHHHhC
Confidence 0 0 12356 689999999998875322 1344555 678999998875
No 274
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.57 E-value=0.0053 Score=46.74 Aligned_cols=55 Identities=22% Similarity=0.472 Sum_probs=38.6
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHH---HhCCCCCCCEEEEEeCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK---QKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~---~~~~V~~~Ptl~~~~~g~ 406 (430)
++.|+.+||++|...+..|++. ++.+-.+|++.+ +.... +..+...+|+++ .+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~--i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIF--IGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 3568899999999999988753 356666777776 44330 334678999973 3554
No 275
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.55 E-value=0.0089 Score=46.29 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=42.7
Q ss_pred EEEEechhHHHHHH-HHHHhc---CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 76 IAIAFSGAEDVVLI-EYAKLT---GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 76 i~vs~SGGKDS~vl-~l~~~~---~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
+++++|||+||.++ +++.+. ...+.++++| ..++.+.+.++++|.+..+....
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~Iv~G~~ 57 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV------AFVRILKRLAAEEGADVIILGHN 57 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH------HHHHHHHHHHHHcCCCEEEEcCC
Confidence 47899999999766 666666 6778888888 88888999999999988766443
No 276
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.49 E-value=0.0095 Score=44.68 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=39.1
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHH---HhCCCC-CCCEEEEEeCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK---QKLQLV-SFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~---~~~~V~-~~Ptl~~~~~g~ 406 (430)
++.|..++|++|...+..|++. ++.+-.+|++.+ ++... +..+.. ++|+++ .+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGD-PALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 4678999999999999888752 477778888876 44430 234655 899774 4565
No 277
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.48 E-value=0.0074 Score=48.39 Aligned_cols=55 Identities=16% Similarity=0.372 Sum_probs=36.2
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc--hH----HHHHhCCCCCCCEEEEEeCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH--KE----FAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~--~~----l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
++.|..+||++|++.+..|++. ++.+..+|+++.. .+ +. +..+...+|.+ |-+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~-~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALS-RLGCSPAVPAV--FVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHH-HhcCCCCcCeE--EECCE
Confidence 4559999999999999877654 2445566666541 12 22 33467899997 44665
No 278
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.45 E-value=0.011 Score=44.19 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=40.2
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchH----HHHHhCCCCCCCEEEEEeCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKE----FAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~----l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
++.|+.++|+.|+..+..|++. ++.+-.+|++++ +. +. +..+-..+|+++ .+|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-------gi~~~~~di~~~-~~~~~el~-~~~g~~~vP~v~--i~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-------GLPYVEINIDIF-PERKAELE-ERTGSSVVPQIF--FNEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-------CCceEEEECCCC-HHHHHHHH-HHhCCCCcCEEE--ECCE
Confidence 5678999999999999888762 477888899877 43 44 445667889874 3554
No 279
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.41 E-value=0.031 Score=49.60 Aligned_cols=68 Identities=29% Similarity=0.464 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 355 AMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 355 ~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
.....|.++|+.+.+ .+.|+.++ + .+++ +++++.. |++++|+++......|.|...+.++|.+||...
T Consensus 7 ~~~~~f~~~A~~~~~-~~~F~~~~---~-~~~~-~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG-DYQFGVTF---N-EELA-KKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE-----HHHH-HHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-CcEEEEEc---H-HHHH-HHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 355678999999997 69999886 4 7889 8999988 999999997666889988337999999999863
No 280
>PHA03050 glutaredoxin; Provisional
Probab=96.36 E-value=0.0069 Score=49.37 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=38.2
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC--c----hHHHHHhCCCCCCCEEEEEeCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD--H----KEFAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~--~----~~l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
++.|..+|||+|+..+..|++..-..+ .|-.+|+++. . ..+. +.-+...+|+++ -+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~-~~tG~~tVP~If--I~g~ 78 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFE-QITGGRTVPRIF--FGKT 78 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHH-HHcCCCCcCEEE--ECCE
Confidence 556999999999999988877643222 3445565542 1 2344 455778999984 3555
No 281
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.30 E-value=0.014 Score=45.45 Aligned_cols=60 Identities=23% Similarity=0.410 Sum_probs=43.8
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEc--CCC-----------------------------chHHHHHh
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRA--DGD-----------------------------HKEFAKQK 390 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~--~~~-----------------------------~~~l~~~~ 390 (430)
++.|+.+.|++|..+.+.++++.....+ ++.+....+ ... +..++ .+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA-RA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-HH
Confidence 4679999999999999999999855555 565555433 211 02345 67
Q ss_pred CCCCCCCEEEEEe
Q 042284 391 LQLVSFPTILFFP 403 (430)
Q Consensus 391 ~~V~~~Ptl~~~~ 403 (430)
+++.++||+++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999998864
No 282
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=96.24 E-value=0.029 Score=50.39 Aligned_cols=138 Identities=17% Similarity=0.269 Sum_probs=77.4
Q ss_pred CcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCC--CCHHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCC
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGR--LNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSF 150 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~--~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~ 150 (430)
.+++||+|||-||+.. .+++.++ +.+|.|- ..++..+-.+.+++.+|.....+.-+...++.-.. +|..
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~g-----~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~~i~kGal-nGRf-- 132 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWAG-----FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLEDIEKGAL-NGRF-- 132 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhhc-----eeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHHHHHhhhc-cCCC--
Confidence 3699999999999776 4444455 4455553 45688888999999998655443322222211111 1211
Q ss_pred CccchhhhhhhhchHHHHHHHh-cCceEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEe-c-ccccchHHHH
Q 042284 151 YEDGHQECCRIRKVRPLKRALK-GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWN-P-LANVKGQDIW 227 (430)
Q Consensus 151 ~~~~~~~cc~~~K~~pl~~~~~-~~~~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~-P-i~dWt~~dVw 227 (430)
...-.|..+.--.-+..+.. +.+++++|---.-. ...+..+ .+++++| | ++.-|+.|+.
T Consensus 133 --hpCGRCh~~I~~~V~~k~re~di~~vafGDlLs~G------~~svy~e----------D~i~rlnlPAflAltK~Elr 194 (255)
T COG1365 133 --HPCGRCHSMIENAVMDKARELDIDVVAFGDLLSTG------YGSVYRE----------DGIFRLNLPAFLALTKDELR 194 (255)
T ss_pred --CCcchHHHHHHHHHHHHHHhcCCeEEEEccccccc------ccceecc----------CCEEEEccHHHHhhCcHHHH
Confidence 12233444433333333332 55688888322211 1111111 2466665 3 4667999999
Q ss_pred HHHHHcCCCC
Q 042284 228 NFLRAMNIPI 237 (430)
Q Consensus 228 ~yi~~~~lp~ 237 (430)
..+..+++..
T Consensus 195 ~il~~~~~e~ 204 (255)
T COG1365 195 SILKWNGYEL 204 (255)
T ss_pred HHHHhcCccc
Confidence 9999998754
No 283
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.23 E-value=0.03 Score=59.26 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=67.5
Q ss_pred CCc-EEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEe-CCCcceeecCCC
Q 042284 338 EDP-WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFP-KHSAKPVKYPSE 415 (430)
Q Consensus 338 ~k~-vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~-~g~~~~~~~~gg 415 (430)
.++ .|+.|+.+.|..|..+...+++++ .+.+ ++.+...|..++ .+++ ++|+|...|++.+++ +|+...+.|.|
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~-~i~~~~~~~~~~-~~~~-~~~~v~~~P~~~i~~~~~~~~~i~f~g- 439 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSE-KLNSEAVNRGEE-PESE-TLPKITKLPTVALLDDDGNYTGLKFHG- 439 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCC-cEEEEEeccccc-hhhH-hhcCCCcCCEEEEEeCCCcccceEEEe-
Confidence 444 577888889999999999999998 4445 688888898888 8899 899999999999995 55433477776
Q ss_pred CCCHHHHHHHHHHh
Q 042284 416 KRDVDSLMAFVNAL 429 (430)
Q Consensus 416 ~~~~~~l~~~i~~~ 429 (430)
--.=.+|..||..+
T Consensus 440 ~P~G~Ef~s~i~~i 453 (555)
T TIGR03143 440 VPSGHELNSFILAL 453 (555)
T ss_pred cCccHhHHHHHHHH
Confidence 34556777777643
No 284
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.17 E-value=0.02 Score=42.68 Aligned_cols=67 Identities=16% Similarity=0.357 Sum_probs=46.1
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc--hHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCH
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH--KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDV 419 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~--~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~ 419 (430)
++.|..+||+.|.+.+..|++. ++.+-.+|++++. ..+. +..+...+|.+ |.+|+ .+ || .
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~-~~~g~~~vP~i--fi~g~--~i---gg---~ 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLR-AVTGAMTVPQV--FIDGE--LI---GG---S 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHH-HHhCCCCcCeE--EECCE--EE---eC---H
Confidence 5679999999999998877742 4677778887661 1233 34588899997 44565 22 33 5
Q ss_pred HHHHHHH
Q 042284 420 DSLMAFV 426 (430)
Q Consensus 420 ~~l~~~i 426 (430)
++|.+|+
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 6777775
No 285
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=95.83 E-value=0.031 Score=50.88 Aligned_cols=126 Identities=15% Similarity=0.217 Sum_probs=80.6
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEE-EEe--cCC--CCC-HHHHHHHHHHHHHhCCcEEEEccCchHHHHHHHhcCC
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRV-FSL--DTG--RLN-PETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGL 147 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~v-i~~--DTg--~~f-pet~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 147 (430)
++++.+||||||+.. +++.+.+.++.. +.+ ..+ +.| -.-.++++..++-.|+++........
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~----------- 70 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGE----------- 70 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCcc-----------
Confidence 477889999999765 888888777653 222 222 122 13457788899999999876644431
Q ss_pred CCCCccchhhhhhhhchHHHHHHHhcCc--eEEEeeeccCCcccccCCCeeeecCCCCcccCCCCCeEEEecccccchHH
Q 042284 148 FSFYEDGHQECCRIRKVRPLKRALKGLR--AWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQD 225 (430)
Q Consensus 148 ~~~~~~~~~~cc~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~d~~~~~~~~~~~~~~~~~Pi~dWt~~d 225 (430)
....++.+.+++++.+ ++++|-=..+- ++..+..+-.. -+...+.||..-...+
T Consensus 71 ------------~e~eve~L~~~l~~l~~d~iv~GaI~s~y--qk~rve~lc~~----------lGl~~~~PLWg~d~~e 126 (223)
T COG2102 71 ------------EEREVEELKEALRRLKVDGIVAGAIASEY--QKERVERLCEE----------LGLKVYAPLWGRDPEE 126 (223)
T ss_pred ------------chhhHHHHHHHHHhCcccEEEEchhhhHH--HHHHHHHHHHH----------hCCEEeecccCCCHHH
Confidence 1244566777777554 77777544443 33332222111 2567889999888888
Q ss_pred HHHHHHHcCC
Q 042284 226 IWNFLRAMNI 235 (430)
Q Consensus 226 Vw~yi~~~~l 235 (430)
+-.-+-..|+
T Consensus 127 ll~e~~~~Gf 136 (223)
T COG2102 127 LLEEMVEAGF 136 (223)
T ss_pred HHHHHHHcCC
Confidence 8887777764
No 286
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.036 Score=42.52 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=37.5
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc----hHHHHHhC-CCCCCCEEEE
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH----KEFAKQKL-QLVSFPTILF 401 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~----~~l~~~~~-~V~~~Ptl~~ 401 (430)
++.|..++||+|++.+..|++. ++.+..+|++... .+.. ++. +..++|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-------g~~~~~i~~~~~~~~~~~~~~-~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-------GVDYEEIDVDDDEPEEAREMV-KRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-------CCCcEEEEecCCcHHHHHHHH-HHhCCCCCcCEEEE
Confidence 5668899999999998877722 5777777777762 1334 343 6899999765
No 287
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.71 E-value=0.057 Score=43.04 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=39.2
Q ss_pred CCcEEEEEe----CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHH---HhCCCCCCCEEEEEeCCC
Q 042284 338 EDPWLIVLY----APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK---QKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 338 ~k~vlV~Fy----a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~---~~~~V~~~Ptl~~~~~g~ 406 (430)
..+|+|+-. +|||++|+..+..|++. ++.+..+|++++ +++.. +..+...+|.++ .+|+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vf--i~g~ 76 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLY--VKGE 76 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 455555433 39999999999887764 366778888776 44330 344667889874 3554
No 288
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=95.59 E-value=0.058 Score=53.68 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=51.4
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHh-cC-CCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 63 EIMDKAFQKFG-NDIAIAFSGAEDVVLI-EYAKL-TG-RPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 63 ~~i~~~~~~~~-~~i~vs~SGGKDS~vl-~l~~~-~~-~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
+-|+|+.+..+ .+++++.|||-||+|+ .|+.+ ++ ..+..+++|.|..-..--+-+++....+|+++.++...
T Consensus 219 e~I~~i~k~vG~~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~as 294 (552)
T KOG1622|consen 219 ECINEIRKWVGDYKVLVAVSGGVDSTVCAALLRRALGPDRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDAS 294 (552)
T ss_pred HHHHHHHHHhcccceEEEecCCchHHHHHHHHHHhhCCCceEEEEecccchhhhHHHHHHHHHHHcCCceEEeech
Confidence 45566666656 5699999999999988 44444 35 35889999999875444445555666699999887543
No 289
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.56 E-value=0.051 Score=42.61 Aligned_cols=59 Identities=24% Similarity=0.491 Sum_probs=39.3
Q ss_pred CCcEEEEEe----CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHH---HhCCCCCCCEEEEEeCCC
Q 042284 338 EDPWLIVLY----APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK---QKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 338 ~k~vlV~Fy----a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~---~~~~V~~~Ptl~~~~~g~ 406 (430)
+++|+|+-. +|||++|+..+..|++. ++.+..+|++.+ +++.. +..+-..+|++ |.+|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~v--fi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDILED-EEVRQGLKEYSNWPTFPQL--YVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEE--EECCE
Confidence 456666433 27999999999877765 366777787766 44430 34467789997 34665
No 290
>PRK10638 glutaredoxin 3; Provisional
Probab=95.50 E-value=0.044 Score=42.14 Aligned_cols=54 Identities=19% Similarity=0.381 Sum_probs=38.8
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchH----HHHHhCCCCCCCEEEEEeCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKE----FAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~----l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
++.|..+||++|+.....+++. ++.+..+|++.+ ++ +. +..+...+|++++ +|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~-~~~~~~l~-~~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGD-AAKREEMI-KRSGRTTVPQIFI--DAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCC-HHHHHHHH-HHhCCCCcCEEEE--CCE
Confidence 5568899999999999887753 366777888776 43 33 4457778998743 554
No 291
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.25 E-value=0.27 Score=39.55 Aligned_cols=89 Identities=13% Similarity=0.270 Sum_probs=61.6
Q ss_pred chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeC-
Q 042284 326 TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPK- 404 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~- 404 (430)
++++.++. .++.++|-|+..--. .....|.++|..+.+ .+.|+... . .++. ..+++ .|++++|++
T Consensus 9 ~~l~~f~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~--~~~ivl~~p~ 74 (104)
T cd03069 9 AEFEKFLS---DDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---D-KQLL-EKYGY--GEGVVLFRPP 74 (104)
T ss_pred HHHHHHhc---cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---h-HHHH-HhcCC--CCceEEEech
Confidence 45666554 677777777766443 466788899999976 57886543 3 5677 78888 788888843
Q ss_pred -----CCcceeecCCCCCCHHHHHHHHHHh
Q 042284 405 -----HSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 405 -----g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
-......|.| ..+.+.|.+||..-
T Consensus 75 ~~~~k~de~~~~y~g-~~~~~~l~~fi~~~ 103 (104)
T cd03069 75 RLSNKFEDSSVKFDG-DLDSSKIKKFIREN 103 (104)
T ss_pred hhhcccCcccccccC-cCCHHHHHHHHHhh
Confidence 1222456777 57899999999753
No 292
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=95.24 E-value=0.023 Score=52.40 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=32.3
Q ss_pred cEEEEechhHHHHHH-HHHHhcCCCcEE-EEec-CCC---CCHH-HHHHHHHHHHHhCCcEEEEc
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTGRPFRV-FSLD-TGR---LNPE-THQFFDTVEKHYGIRIEYTF 132 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~~~i~v-i~~D-Tg~---~fpe-t~~~~~~~~~~~gl~i~~~~ 132 (430)
+++++|||||||++. +.+.+. .++.. +++. .+. -|.. -.+.++..++.+|+++..+.
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~ 65 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIP 65 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT--EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHHh-CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEE
Confidence 478999999999775 666555 55543 2222 221 1222 25678899999999986553
No 293
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.20 E-value=0.51 Score=37.78 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=64.0
Q ss_pred ceEc-ccchHHHHHHhcC-CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCC
Q 042284 320 LVSF-RRTGIENLARLQN-REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397 (430)
Q Consensus 320 v~~l-t~~~f~~~i~~~~-~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~P 397 (430)
+..+ +.++++.++ + .+..++|-|+..--. .....|.++|..+.+ .+.|+.. .+ .++. ..+++. .|
T Consensus 2 v~~i~~~~~~e~~~---~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~---~~-~~~~-~~~~~~-~~ 68 (102)
T cd03066 2 VEIINSERELQAFE---NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFAT---FD-SKVA-KKLGLK-MN 68 (102)
T ss_pred ceEcCCHHHHHHHh---cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEE---Cc-HHHH-HHcCCC-CC
Confidence 3444 334466655 3 455666666665433 356678899999976 5788553 23 5677 777764 79
Q ss_pred EEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 398 TILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 398 tl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
++++|++.......|.+|..+.+.|.+||..-
T Consensus 69 ~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 69 EVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred cEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 99999763333566734478999999999753
No 294
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.11 Score=41.87 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=40.4
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHH---HhCCCCCCCEEEEEeCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK---QKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~---~~~~V~~~Ptl~~~~~g~ 406 (430)
...+|+| |..+||+.|+.++..|.+ +.- ...++.+|-+.+..++-. +--+-..+|.+++ +|+
T Consensus 12 ~~~~VVi-fSKs~C~~c~~~k~ll~~----~~v-~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 12 SENPVVI-FSKSSCPYCHRAKELLSD----LGV-NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred hcCCEEE-EECCcCchHHHHHHHHHh----CCC-CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence 3455554 899999999998877777 333 567777777665334331 2223558898654 666
No 295
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.09 E-value=0.049 Score=46.57 Aligned_cols=33 Identities=12% Similarity=0.325 Sum_probs=28.7
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG 369 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~ 369 (430)
..+++|+.|+.++|++|+.+.|.+.++...+++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 467899999999999999999999998777643
No 296
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.059 Score=56.70 Aligned_cols=81 Identities=15% Similarity=0.309 Sum_probs=62.5
Q ss_pred eEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHH-H--HHHHHHHcCCCeEEEEEEcCCCchHHHHHhCC-----
Q 042284 321 VSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGS-Y--IELAEQLEGMGVKVGKFRADGDHKEFAKQKLQ----- 392 (430)
Q Consensus 321 ~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~----- 392 (430)
....++.|..... .+||++|-...+||..|+.|... | .++|+.++. +++-++||-++- |++- +.|.
T Consensus 29 ~pW~~eAf~~A~~---edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREER-PDvD-~~Ym~~~q~ 102 (667)
T COG1331 29 YPWGEEAFAKAKE---EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREER-PDVD-SLYMNASQA 102 (667)
T ss_pred cccCHHHHHHHHH---hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhc-cCHH-HHHHHHHHH
Confidence 3456677887655 89999999999999999999875 3 788888877 789999999887 7765 4442
Q ss_pred ---CCCCCEEEEEeCCCc
Q 042284 393 ---LVSFPTILFFPKHSA 407 (430)
Q Consensus 393 ---V~~~Ptl~~~~~g~~ 407 (430)
--++|-.+|..+..+
T Consensus 103 ~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred hccCCCCceeEEECCCCc
Confidence 347997777755443
No 297
>PRK10824 glutaredoxin-4; Provisional
Probab=94.33 E-value=0.16 Score=41.82 Aligned_cols=59 Identities=14% Similarity=0.261 Sum_probs=36.6
Q ss_pred CCcEEEEEeC----CCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHH---HhCCCCCCCEEEEEeCCC
Q 042284 338 EDPWLIVLYA----PWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK---QKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 338 ~k~vlV~Fya----~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~---~~~~V~~~Ptl~~~~~g~ 406 (430)
..+|+|+--. |||++|+.....|.++. +.+..+|++.+ +++.. +.-+-..+|.+++ +|+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-------i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI--~G~ 79 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG-------ERFAYVDILQN-PDIRAELPKYANWPTFPQLWV--DGE 79 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC-------CCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 4555553332 69999999998887752 44555677666 44431 2335567888654 555
No 298
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.69 Score=40.19 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=65.1
Q ss_pred CCCcEEEEEe-CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC--------------------chHHHHHhCCCCC
Q 042284 337 REDPWLIVLY-APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD--------------------HKEFAKQKLQLVS 395 (430)
Q Consensus 337 ~~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~--------------------~~~l~~~~~~V~~ 395 (430)
.+++||++|| ..+++.|-...-.|++...++...++.++.|..|.. +..++ +.|+|..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~-~~ygv~~ 107 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVA-EAYGVWG 107 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHH-HHhCccc
Confidence 4678999999 689999999999999999888776778888866532 15677 7888743
Q ss_pred ------------CCEEEEEeCCCcceeecCC--CCCCHHHHHHHHHHh
Q 042284 396 ------------FPTILFFPKHSAKPVKYPS--EKRDVDSLMAFVNAL 429 (430)
Q Consensus 396 ------------~Ptl~~~~~g~~~~~~~~g--g~~~~~~l~~~i~~~ 429 (430)
.++.++++..+.+...+.. -.-..+++.+.|+++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4677777665543333322 134577888887765
No 299
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.09 E-value=0.026 Score=53.66 Aligned_cols=88 Identities=20% Similarity=0.403 Sum_probs=68.0
Q ss_pred CCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCC
Q 042284 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSE 415 (430)
Q Consensus 336 ~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg 415 (430)
++..++-+.||+.||+..+...|.++-....+.. +....|+-....+.+. .++++.+.|++++....- ...|.|
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~--i~h~~vee~~~lpsv~-s~~~~~~~ps~~~~n~t~--~~~~~~- 147 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS--IQHFAVEESQALPSVF-SSYGIHSEPSNLMLNQTC--PASYRG- 147 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccc--cccccHHHHhhcccch-hccccccCCcceeecccc--chhhcc-
Confidence 3467899999999999999999999888888864 3333333222226777 899999999999887655 677777
Q ss_pred CCCHHHHHHHHHHh
Q 042284 416 KRDVDSLMAFVNAL 429 (430)
Q Consensus 416 ~~~~~~l~~~i~~~ 429 (430)
.++...|++|..++
T Consensus 148 ~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 148 ERDLASLVNFYTEI 161 (319)
T ss_pred cccHHHHHHHHHhh
Confidence 68999999998764
No 300
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.49 E-value=0.25 Score=42.73 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=35.0
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHH--cCCCeEEEEEEc
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQL--EGMGVKVGKFRA 379 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~--~~~~v~~~~Vd~ 379 (430)
..+++|+.|+...|++|..+.+.+.++.+++ .+ ++.|...+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 4578899999999999999999999999998 55 788777755
No 301
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.03 E-value=0.16 Score=44.79 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=32.5
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEE
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVG 375 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~ 375 (430)
..++.|+.|+...|++|+.+.+.+.++.+++++ ++.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEE
Confidence 568899999999999999999999999888865 45444
No 302
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=92.96 E-value=0.57 Score=49.39 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=42.9
Q ss_pred CCcEEEEechhHHHHHH-HHHHhcCCCcEE--EEecCCCC-CHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 73 GNDIAIAFSGAEDVVLI-EYAKLTGRPFRV--FSLDTGRL-NPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 73 ~~~i~vs~SGGKDS~vl-~l~~~~~~~i~v--i~~DTg~~-fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
..++.+.+|||-||.++ .++.+..+.... +.++++.. ++|+ ++++++++.+|.+.+.+.-.
T Consensus 230 dvpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D~-~~a~~~A~~lg~~h~~~~~~ 294 (542)
T COG0367 230 DVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPDA-KYARAVAKFLGTPHHEIILT 294 (542)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCCCchH-HHHHHHHHHhCCCcEEEeec
Confidence 45688999999999776 666665433222 66666665 4554 88999999999977554433
No 303
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=92.93 E-value=0.68 Score=49.85 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=60.9
Q ss_pred CcEEEEechhHHHHHH-HHHHhc-CCCcEEEEecCCC-CCHHHHHHHHHHHHHhCCcEEEEccCchHH---HHHHHhcCC
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLT-GRPFRVFSLDTGR-LNPETHQFFDTVEKHYGIRIEYTFPNAVEV---QALVRTKGL 147 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~-~~~i~vi~~DTg~-~fpet~~~~~~~~~~~gl~i~~~~p~~~~~---~~~~~~~g~ 147 (430)
.++.+..|||-||.++ .++.+. ..++..+.+.... .+.|. .+++++++++|.+.+++......+ .......+.
T Consensus 259 ~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~~~dE~-~~A~~vA~~~g~~h~~~~~~~~~~~~~~~~~~~~~~ 337 (628)
T TIGR03108 259 VPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDES-AYARQVAERYGTNHRVETVDPDDFSLVDRLAGLYDE 337 (628)
T ss_pred CcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCCCCChH-HHHHHHHHHhCCCCeEEecCHHHHHHHHHHHHHhCC
Confidence 4588889999999765 555543 3456655554432 34454 889999999999876665443322 222222222
Q ss_pred CCCCccchhhhhhhhchHHHHHHHhcCceEEEeeeccCCc
Q 042284 148 FSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSP 187 (430)
Q Consensus 148 ~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~ 187 (430)
|.. . ...+. .....+.+-++.+++++|.-+||-.
T Consensus 338 P~~-~-~~~~~----~~~~~~~a~~~~kV~LsG~GgDElf 371 (628)
T TIGR03108 338 PFA-D-SSALP----TYRVCELARKRVTVALSGDGGDELF 371 (628)
T ss_pred CCC-C-chHHH----HHHHHHHHHCCCCEEEeccchhhcc
Confidence 221 1 11111 1111122334678999999888864
No 304
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.92 E-value=0.24 Score=50.26 Aligned_cols=51 Identities=16% Similarity=0.344 Sum_probs=38.0
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchH---HHHHh---------CCCCCCCEEEE
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKE---FAKQK---------LQLVSFPTILF 401 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~---l~~~~---------~~V~~~Ptl~~ 401 (430)
++.|..+||++|++.+..|++. ++.+-.||+++. +. +. ++ .+...+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~~-~~~~~~~-~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDDD-VKRAEFY-AEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCCC-hhHHHHH-HHHhhccccccCCCCccCeEEE
Confidence 5679999999999998877663 477888899876 43 22 12 36778999865
No 305
>PTZ00062 glutaredoxin; Provisional
Probab=92.72 E-value=0.42 Score=43.57 Aligned_cols=59 Identities=17% Similarity=0.347 Sum_probs=37.7
Q ss_pred CCcEEEEE----eCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHH---HhCCCCCCCEEEEEeCCC
Q 042284 338 EDPWLIVL----YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK---QKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 338 ~k~vlV~F----ya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~---~~~~V~~~Ptl~~~~~g~ 406 (430)
..+|+|+- ++|+|++|+++...|++. ++.+..+|++++ +++.. +.-+-..+|.+++ +|+
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI--~G~ 177 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSS-------GVKYETYNIFED-PDLREELKVYSNWPTYPQLYV--NGE 177 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHc-------CCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 44555532 237999999998877753 467778888877 55430 2235567787653 555
No 306
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=92.40 E-value=0.78 Score=48.70 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=39.0
Q ss_pred CcEEEEechhHHHHHH-HHHHhcC----------CCcEEEEecCCCC-CHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTG----------RPFRVFSLDTGRL-NPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~----------~~i~vi~~DTg~~-fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
.++.+.+|||-||+++ .++.+.. +.+..+. .|.+ .|| ..+++++++++|.+.+.+...
T Consensus 226 vpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~D-~~~Ar~vA~~lg~~h~ev~~~ 295 (578)
T PLN02549 226 VPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFC--VGLEGSPD-LKAAREVADYLGTVHHEFHFT 295 (578)
T ss_pred CceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEe--cCCCCCCH-HHHHHHHHHHhCCCCeEEEEC
Confidence 4589999999999776 5665531 2333333 3443 444 568999999999987665443
No 307
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=92.18 E-value=0.34 Score=42.13 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=33.0
Q ss_pred CCcEEEEEe-CCCCHhHHHH-HHHHHHHHHHHcCCCe-EEEEEEcCC
Q 042284 338 EDPWLIVLY-APWCHFCQAM-EGSYIELAEQLEGMGV-KVGKFRADG 381 (430)
Q Consensus 338 ~k~vlV~Fy-a~wC~~C~~~-~p~~~~la~~~~~~~v-~~~~Vd~~~ 381 (430)
+++++|.|| +.||+.|... .+.|.+..+++...++ .++.|..|.
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 455555555 8899999998 9999999999875456 477776653
No 308
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=92.04 E-value=1.3 Score=47.20 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=62.6
Q ss_pred CcEEEEechhHHHHHH-HHHHhc-CCCcEEEEecCCC----CCHHHHHHHHHHHHHhCCcEEEEccCchH----HHHHHH
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLT-GRPFRVFSLDTGR----LNPETHQFFDTVEKHYGIRIEYTFPNAVE----VQALVR 143 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~-~~~i~vi~~DTg~----~fpet~~~~~~~~~~~gl~i~~~~p~~~~----~~~~~~ 143 (430)
.++.+.+|||-||.++ .++.+. ..++..+.+.... .+.|. +|++++++++|.+.+.+...... +...+.
T Consensus 261 ~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE~-~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~ 339 (589)
T TIGR03104 261 VPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEF-EYSDIIAERFHTRHHKIRIPNHRVLPALPEAVA 339 (589)
T ss_pred CceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCChH-HHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHHH
Confidence 4688999999999665 555554 3345555443321 25564 79999999999988766554433 233333
Q ss_pred hcCCCCCCccchhhhhhhhchHHHHHHH-hcCceEEEeeeccCCc
Q 042284 144 TKGLFSFYEDGHQECCRIRKVRPLKRAL-KGLRAWITGQRKDQSP 187 (430)
Q Consensus 144 ~~g~~~~~~~~~~~cc~~~K~~pl~~~~-~~~~~~i~G~R~~Es~ 187 (430)
..+.|....... . ..-+.++. ++.+++++|-=+||-.
T Consensus 340 ~~~~P~~~~~~~--~-----~~~l~~~a~~~~kV~LsGeGaDElF 377 (589)
T TIGR03104 340 AMSEPMVSHDCV--A-----FYLLSEEVSKHVKVVQSGQGADEVF 377 (589)
T ss_pred HhCCCCCCchHH--H-----HHHHHHHHhCCCeEEeecCchHhcc
Confidence 334332211110 0 11122333 3678999999999864
No 309
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=91.20 E-value=1 Score=47.93 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=59.2
Q ss_pred CcEEEEechhHHHHHH-HHHHhcC------------CCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchH---
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTG------------RPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVE--- 137 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~------------~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~--- 137 (430)
.++.+.+|||-||.++ .++.+.. .++..+.+... ..|| ..+++++++++|.+.+.+......
T Consensus 238 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~Ar~vA~~lg~~h~~i~~~~~e~~~ 315 (586)
T PTZ00077 238 VPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE-GSPD-LKAARKVAEYLGTEHHEFTFTVEEGID 315 (586)
T ss_pred CceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC-CCch-HHHHHHHHHHhCCcCcEEEECHHHHHH
Confidence 4689999999999766 5665542 23554544331 2455 578999999999988665443322
Q ss_pred -HHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHh--cCceEEEeeeccCCc
Q 042284 138 -VQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSP 187 (430)
Q Consensus 138 -~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~ 187 (430)
+...+.....+... ..+.... ..-+.+.++ +.+++++|--+||-.
T Consensus 316 ~l~~~i~~le~~~~~--~~~~~~p---~yll~r~a~~~gvkVvLsGeGaDElF 363 (586)
T PTZ00077 316 ALPDVIYHTETYDVT--TIRASTP---MYLLSRRIKALGIKMVLSGEGSDELF 363 (586)
T ss_pred HHHHHHHHhcCCCCC--CcchHHH---HHHHHHHHHhcCCeEEEecCchhhhc
Confidence 22222211211100 0010000 112333333 578999999888863
No 310
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=90.16 E-value=0.37 Score=44.01 Aligned_cols=39 Identities=23% Similarity=0.612 Sum_probs=31.2
Q ss_pred CCcEEEEEeCCCCHhHHHHHHHH---HHHHHHHcCCCeEEEEE
Q 042284 338 EDPWLIVLYAPWCHFCQAMEGSY---IELAEQLEGMGVKVGKF 377 (430)
Q Consensus 338 ~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~V 377 (430)
+++.||.|+.-.|++|..+.+.+ +.+.+.+.+ ++.|..+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEe
Confidence 46779999999999999999876 788888876 4555543
No 311
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=89.51 E-value=1.6 Score=32.66 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=50.6
Q ss_pred EEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCC
Q 042284 341 WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKH 405 (430)
Q Consensus 341 vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g 405 (430)
.+..|-+..-+..+.....+.++.+.+-+..+.+=-||+.++ +.++ +.++|-.+||++-..++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLvk~~P~ 65 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ-PQLA-EEDKIVATPTLVKVLPP 65 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC-HhHH-hhCCEEEechhhhcCCC
Confidence 455566666688888888888888777555788999999999 9999 99999999998755433
No 312
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=89.32 E-value=1.7 Score=45.91 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=60.3
Q ss_pred CcEEEEechhHHHHHH-HHHHhcC--------------CCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHH
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTG--------------RPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEV 138 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~--------------~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~ 138 (430)
.++.+.+|||-||+++ .++.+.. +++..+.+.... .+| ..+++++++++|.+.+.+.......
T Consensus 228 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~-~~D-~~~A~~vA~~lg~~h~~v~~t~~e~ 305 (554)
T PRK09431 228 VPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG-SPD-LKAAREVADHLGTVHHEIHFTVQEG 305 (554)
T ss_pred CceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCCC-CCh-HHHHHHHHHHhCCccEEEEeCHHHH
Confidence 4689999999999776 5665542 245555554432 455 5889999999999887665443322
Q ss_pred ----HHHHHhcCCCCCCccchhhhhhhhchHHHHHHH--hcCceEEEeeeccCCc
Q 042284 139 ----QALVRTKGLFSFYEDGHQECCRIRKVRPLKRAL--KGLRAWITGQRKDQSP 187 (430)
Q Consensus 139 ----~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~--~~~~~~i~G~R~~Es~ 187 (430)
.+.+......... ..+.... ..-+.+.+ .+.+++++|-=+||-.
T Consensus 306 ~~~l~~vi~~le~~dp~--~~~~~~p---~yll~~~~~~~gvkvvLsGeGaDElF 355 (554)
T PRK09431 306 LDALRDVIYHLETYDVT--TIRASTP---MYLMARKIKAMGIKMVLSGEGADELF 355 (554)
T ss_pred HHHHHHHHHHHhccCCc--cchhHHH---HHHHHHHHHHcCCEEEEecCchhhhh
Confidence 2222111110000 0010000 11123332 3678999999888864
No 313
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=88.80 E-value=7.6 Score=31.34 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=57.4
Q ss_pred cchHHHHHHhcCCC-CcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEe
Q 042284 325 RTGIENLARLQNRE-DPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFP 403 (430)
Q Consensus 325 ~~~f~~~i~~~~~~-k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~ 403 (430)
.++++.++. .. +.++|-|+..--+ .....|.++|..+.+ .+.|+... + .++. .++++. .|.+++|.
T Consensus 8 ~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~---~-~~~~-~~~~~~-~~~vvl~r 74 (107)
T cd03068 8 LKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTF---D-SEIF-KSLKVS-PGQLVVFQ 74 (107)
T ss_pred HHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEC---h-HHHH-HhcCCC-CCceEEEC
Confidence 355666654 44 6666666665433 356678899999977 67886542 3 5677 788775 57788884
Q ss_pred CC------CcceeecCCCCCCHHH-HHHHHHH
Q 042284 404 KH------SAKPVKYPSEKRDVDS-LMAFVNA 428 (430)
Q Consensus 404 ~g------~~~~~~~~gg~~~~~~-l~~~i~~ 428 (430)
+. +.....|.|...+.++ |.+||++
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 32 2225666652134544 9999974
No 314
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=88.54 E-value=2 Score=46.69 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHHcC-CcEEEEechhHHHHHH-HHH-------Hh-c--CCC----------------------------cEEEEecCCC
Q 042284 69 FQKFG-NDIAIAFSGAEDVVLI-EYA-------KL-T--GRP----------------------------FRVFSLDTGR 108 (430)
Q Consensus 69 ~~~~~-~~i~vs~SGGKDS~vl-~l~-------~~-~--~~~----------------------------i~vi~~DTg~ 108 (430)
+++.+ ..++|+.|||-||++. .|+ .+ . +.. +..++.-+-.
T Consensus 343 l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp~~~ 422 (700)
T PLN02339 343 LRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSEN 422 (700)
T ss_pred HHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECCCCC
Confidence 34444 5699999999999764 442 12 1 211 3445566556
Q ss_pred CCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 109 LNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 109 ~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
--++|++-++++++.+|+.+..+.-+
T Consensus 423 ss~~t~~~A~~la~~lG~~~~~i~I~ 448 (700)
T PLN02339 423 SSEETRSRAKQLADEIGSSHLDVKID 448 (700)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeCH
Confidence 67899999999999999998776443
No 315
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=87.83 E-value=1.8 Score=37.26 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=36.8
Q ss_pred EEEEeCC------CCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHH---HhCCC----CCCCEEEEEeCCC
Q 042284 342 LIVLYAP------WCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK---QKLQL----VSFPTILFFPKHS 406 (430)
Q Consensus 342 lV~Fya~------wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~---~~~~V----~~~Ptl~~~~~g~ 406 (430)
+|.|+++ +|++|+.++..|+.+ ++.|-.+|++.+ +++.. +.++- ..+|.+++ +|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~V~~~e~DVs~~-~~~~~EL~~~~g~~~~~~tvPqVFI--~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------RVKFDERDVSMD-SGFREELRELLGAELKAVSLPRVFV--DGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHHHHhCCCCCCCCCCEEEE--CCE
Confidence 3456666 899999999887764 477888999876 43330 33343 57887654 454
No 316
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=85.16 E-value=5.4 Score=38.21 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=39.3
Q ss_pred CcEEEEechhHH-HHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcE
Q 042284 74 NDIAIAFSGAED-VVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRI 128 (430)
Q Consensus 74 ~~i~vs~SGGKD-S~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i 128 (430)
+.+++|+|||-| |++|..+.+.+-++..+..|.|- .|-.+-+++-+-+.|-.-
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqGyeViay~AnvGQ--~edfe~ar~kAlk~Gakk 59 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQ--KEDFEEARKKALKSGAKK 59 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcCceEEEeeccccc--hhhHHHHHHhhhhcCceE
Confidence 458999999999 67777778899999999999996 344444555555666543
No 317
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=84.13 E-value=2.8 Score=42.22 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=32.0
Q ss_pred CcEEEEechhHHHHHH-HHHHhcCCC-cEEEEecCCCCCHHH------------HHHHHHHHHHhCC
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTGRP-FRVFSLDTGRLNPET------------HQFFDTVEKHYGI 126 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~~~-i~vi~~DTg~~fpet------------~~~~~~~~~~~gl 126 (430)
.+++|.||||-||+|+ +|+...-++ -++--+++-.+.||+ ..=++++...|+-
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P~ 317 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYPK 317 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCcccccCCccHHHHHHHHHHHHHhCCc
Confidence 4699999999999887 777776432 222223333332222 3445677777754
No 318
>PHA03075 glutaredoxin-like protein; Provisional
Probab=84.11 E-value=1.7 Score=35.33 Aligned_cols=30 Identities=23% Similarity=0.578 Sum_probs=25.7
Q ss_pred CcEEEEEeCCCCHhHHHHHHHHHHHHHHHc
Q 042284 339 DPWLIVLYAPWCHFCQAMEGSYIELAEQLE 368 (430)
Q Consensus 339 k~vlV~Fya~wC~~C~~~~p~~~~la~~~~ 368 (430)
|.++|.|..|.|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578999999999999999988877776663
No 319
>PRK09301 circadian clock protein KaiB; Provisional
Probab=83.31 E-value=6.7 Score=31.41 Aligned_cols=74 Identities=11% Similarity=-0.054 Sum_probs=57.9
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPS 414 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~g 414 (430)
+...++=.|.|..-+..+.....+.++-+.+-...+.+=-||+.++ |.++ +.++|-.+||++-..+.- ..+..|
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q-PelA-E~~~IvATPTLIK~~P~P--~rriiG 77 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN-PQLA-EEDKILATPTLAKILPPP--VRKIIG 77 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCeEEecHHhhcCCCC--cceeec
Confidence 3467788888998999999888888887765443688888999999 9999 999999999987655443 334445
No 320
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=82.32 E-value=7.2 Score=28.48 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=34.2
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEE
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~ 400 (430)
+.|+.++|+.|++..-.+++. +-.+.+..+|.....+++. +......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~~~~~~~-~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GITVELREVELKNKPAEML-AASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCCCCHHHH-HHCCCCCCCEEE
Confidence 457899999999987555443 2135566666544324665 555677899985
No 321
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=82.03 E-value=9 Score=29.73 Aligned_cols=72 Identities=10% Similarity=-0.090 Sum_probs=55.8
Q ss_pred CcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCC
Q 042284 339 DPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPS 414 (430)
Q Consensus 339 k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~g 414 (430)
..++=.|.|..-+.++.....+.++.+.+-...+.+=-||+.++ |.++ +.++|-.+||++-..+.- ..+..|
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q-P~lA-E~~~IvATPtLIK~~P~P--~rriiG 74 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN-PQLA-EEDKILATPTLSKILPPP--VRKIIG 74 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCEEEecHHhhcCCCC--cceeec
Confidence 45666788888888998888888887765443688888999999 9999 999999999987665543 334444
No 322
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=81.79 E-value=13 Score=37.14 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=67.5
Q ss_pred hHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHH--HHHHHHHHHcCCCeEEEEEEcCCCc-hHHHHHhCCCCCCCEEEEEe
Q 042284 327 GIENLARLQNREDPWLIVLYAPWCHFCQAMEG--SYIELAEQLEGMGVKVGKFRADGDH-KEFAKQKLQLVSFPTILFFP 403 (430)
Q Consensus 327 ~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p--~~~~la~~~~~~~v~~~~Vd~~~~~-~~l~~~~~~V~~~Ptl~~~~ 403 (430)
|+-+.+...+.++.++|-|-+.-......|.. .++......-...+..++|+..... ..+. .-|.+..+|+++++.
T Consensus 7 nipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs-~IYp~v~vPs~ffIg 85 (506)
T KOG2507|consen 7 NIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFS-AIYPYVSVPSIFFIG 85 (506)
T ss_pred chHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhh-hhcccccccceeeec
Confidence 44555555567888999898888888888872 3333333322225677777654431 4556 678889999999996
Q ss_pred CCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 404 KHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 404 ~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
..+..+....| ...+++|..-|+++
T Consensus 86 ~sGtpLevitg-~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 86 FSGTPLEVITG-FVTADELASSIEKV 110 (506)
T ss_pred CCCceeEEeec-cccHHHHHHHHHHH
Confidence 55543444444 78899999888765
No 323
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=79.89 E-value=1.7 Score=27.98 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.7
Q ss_pred ccchHHHHHHHHHcCCCCcccc
Q 042284 220 NVKGQDIWNFLRAMNIPINSLH 241 (430)
Q Consensus 220 dWt~~dVw~yi~~~~lp~~pLY 241 (430)
.|+..|+..||..+||++.+-.
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCC
Confidence 5999999999999999988743
No 324
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=79.32 E-value=12 Score=35.78 Aligned_cols=127 Identities=12% Similarity=0.174 Sum_probs=68.3
Q ss_pred CcccccchhhhccCCCccccccCCCCCCCCCC------CCCCceEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHH
Q 042284 284 NIKQEELSQHININGNGVAQHTNGSAPASDLF------NSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAME 357 (430)
Q Consensus 284 ~i~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~------~~~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~ 357 (430)
.+..|||-.+|-+.-+ -.+.|..+-..+. ...-|..+++ |=..+........+.+|+|.+.--
T Consensus 97 giqGYPTIk~~kgd~a---~dYRG~R~Kd~iieFAhR~a~aiI~pi~e-nQ~~fehlq~Rhq~ffVf~Gtge~------- 165 (468)
T KOG4277|consen 97 GIQGYPTIKFFKGDHA---IDYRGGREKDAIIEFAHRCAAAIIEPINE-NQIEFEHLQARHQPFFVFFGTGEG------- 165 (468)
T ss_pred ccCCCceEEEecCCee---eecCCCccHHHHHHHHHhcccceeeecCh-hHHHHHHHhhccCceEEEEeCCCC-------
Confidence 5778888777755544 5666666555543 1122333343 222222333478899998886542
Q ss_pred HHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 358 GSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 358 p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
|.+++..+.-.. .+.+++.--. . .+++......+..|.+.+|++.. ...+.. .+.+.|.+||++
T Consensus 166 PL~d~fidAASe-~~~~a~FfSa-s-eeVaPe~~~~kempaV~VFKDet--f~i~de--~dd~dLseWinR 229 (468)
T KOG4277|consen 166 PLFDAFIDAASE-KFSVARFFSA-S-EEVAPEENDAKEMPAVAVFKDET--FEIEDE--GDDEDLSEWINR 229 (468)
T ss_pred cHHHHHHHHhhh-heeeeeeecc-c-cccCCcccchhhccceEEEccce--eEEEec--CchhHHHHHHhH
Confidence 333333322222 3444433211 1 12221333456789999999876 343333 356889999875
No 325
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=76.88 E-value=38 Score=27.40 Aligned_cols=107 Identities=7% Similarity=-0.011 Sum_probs=73.9
Q ss_pred eEcccchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC-CCeEEEEEEcCCCchHHHH---HhCCCC-C
Q 042284 321 VSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG-MGVKVGKFRADGDHKEFAK---QKLQLV-S 395 (430)
Q Consensus 321 ~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~-~~v~~~~Vd~~~~~~~l~~---~~~~V~-~ 395 (430)
..|+.+++-++=. ...+...+|-|--+--+.-.+|.+.+.++|+.+.. .++.|+-||-++. |-+.. +.|+|. .
T Consensus 4 rkl~~~~m~e~we-dd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F-Pllv~yWektF~IDl~ 81 (120)
T cd03074 4 RKLKPENMFETWE-DDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF-PLLVPYWEKTFGIDLF 81 (120)
T ss_pred hhccHHHHHHhhh-cccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC-chhhHHHHhhcCcccC
Confidence 4455555555433 23457888889989999999999999999999976 4899999999998 66551 345553 2
Q ss_pred CCEEEEEeCCCcc--eeecCC--CCCCHHHHHHHHHHh
Q 042284 396 FPTILFFPKHSAK--PVKYPS--EKRDVDSLMAFVNAL 429 (430)
Q Consensus 396 ~Ptl~~~~~g~~~--~~~~~g--g~~~~~~l~~~i~~~ 429 (430)
-|.+=+.+-.... =....+ ...++++|.+||+.+
T Consensus 82 ~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 82 RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred CCceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 4887776433322 222222 136799999999875
No 326
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=76.71 E-value=34 Score=26.92 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=48.2
Q ss_pred CCcE-EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCC
Q 042284 338 EDPW-LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEK 416 (430)
Q Consensus 338 ~k~v-lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~ 416 (430)
.++| ++.|..+. ..|+.+...++++++.-. ++.+-..+. . . ..|++.+..+|+...++|.| -
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~-------~-~-----~~P~~~i~~~~~~~gIrF~G-i 80 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDND-------D-E-----RKPSFSINRPGEDTGIRFAG-I 80 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecC-------C-C-----CCCEEEEecCCCcccEEEEe-c
Confidence 4455 44555555 999999999988876543 455532111 1 1 47999998887543577777 3
Q ss_pred CCHHHHHHHHHHh
Q 042284 417 RDVDSLMAFVNAL 429 (430)
Q Consensus 417 ~~~~~l~~~i~~~ 429 (430)
-.=.++..||..+
T Consensus 81 P~GhEf~Slilai 93 (94)
T cd02974 81 PMGHEFTSLVLAL 93 (94)
T ss_pred CCchhHHHHHHHh
Confidence 4556788887654
No 327
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=76.25 E-value=47 Score=28.15 Aligned_cols=90 Identities=11% Similarity=0.083 Sum_probs=60.9
Q ss_pred CCCCcEEEEEeCCCCHhHHHHHHHH---HHHHHHHcCCCeEEEEEEcCCCc-h----------------HHHHHhCCCCC
Q 042284 336 NREDPWLIVLYAPWCHFCQAMEGSY---IELAEQLEGMGVKVGKFRADGDH-K----------------EFAKQKLQLVS 395 (430)
Q Consensus 336 ~~~k~vlV~Fya~wC~~C~~~~p~~---~~la~~~~~~~v~~~~Vd~~~~~-~----------------~l~~~~~~V~~ 395 (430)
+..|+.+|+..+|--..+..+-... +.+.+.+++ ++.+..-|++..+ . ... +.++...
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~-nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~-~~~~~~~ 96 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ-NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTI-RNIKTDQ 96 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc-CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHH-HhcCcCC
Confidence 4589999999998775554444433 566666666 7888888887651 1 133 5678999
Q ss_pred CCEEEEEeCCCc---ceeecCCCCCCHHHHHHHHHH
Q 042284 396 FPTILFFPKHSA---KPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 396 ~Ptl~~~~~g~~---~~~~~~gg~~~~~~l~~~i~~ 428 (430)
+|.+.++-.... +.....| ..+++++.+-|..
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G-~~~~~ell~~L~~ 131 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQG-NTGVDELLMRLIE 131 (136)
T ss_pred CCeEEEEEecCCceEEEEEEEC-CCCHHHHHHHHHH
Confidence 999988854332 2333444 7899999887754
No 328
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=76.16 E-value=18 Score=29.52 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=42.5
Q ss_pred cchHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeC
Q 042284 325 RTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPK 404 (430)
Q Consensus 325 ~~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~ 404 (430)
++.+..++......+.++|.=.-+.- .+.+....+.+.....+- ...|.+ + |.+. ++|+|+.+|++++-++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g----~~~~t~~~~~~l~~~~~~-~~~v~I--d-P~~F-~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDG----SFKPTAKAIQELLRKDDP-CPGVQI--D-PRLF-RQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCC----CHHHHHHHHHHHhhccCC-CcceeE--C-hhHH-hhCCceEcCEEEEEcC
Confidence 34555555544445555554443332 566666555555543111 133333 3 8899 9999999999999887
No 329
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=74.44 E-value=19 Score=37.77 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=52.7
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEK 416 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~ 416 (430)
-.++|-+.++.+-|..|..+...++++++.- + ++.+-.. .. . ...|++.+..+|+...+.|.| -
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~-~i~~~~~---~~------~----~~~p~~~~~~~~~~~~i~f~g-~ 80 (517)
T PRK15317 17 LERPIELVASLDDSEKSAELKELLEEIASLS-D-KITVEED---SL------D----VRKPSFSITRPGEDTGVRFAG-I 80 (517)
T ss_pred CCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-C-ceEEEEc---cC------C----CCCCEEEEEcCCccceEEEEe-c
Confidence 3567766666668999999999999998655 3 4555321 11 1 247999998877655677776 4
Q ss_pred CCHHHHHHHHHHh
Q 042284 417 RDVDSLMAFVNAL 429 (430)
Q Consensus 417 ~~~~~l~~~i~~~ 429 (430)
-.-.+|..||..+
T Consensus 81 P~g~Ef~s~i~~i 93 (517)
T PRK15317 81 PMGHEFTSLVLAL 93 (517)
T ss_pred CccHHHHHHHHHH
Confidence 5566777777654
No 330
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=74.42 E-value=4 Score=32.68 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=41.9
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc---hHHHHHhCCCCCCCEEEEEeCCCcceeecCC----C
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH---KEFAKQKLQLVSFPTILFFPKHSAKPVKYPS----E 415 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~---~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~g----g 415 (430)
..|+.++|+.|+.....|++. ++.|-.+|+.++. .++. +-++-.+.+.--++..... ...-.+ .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~~l~-~~~~~~~~~~~~li~~~~~-~~~~l~~~~~~ 72 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLKEPPTKEELK-ELLAKLGLGVEDLFNTRGT-PYRKLGLADKD 72 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCCcEEEeeccCCCCHHHHH-HHHHhcCCCHHHHHhcCCc-hHHHcCCcccc
Confidence 568999999999988766653 3666677776531 2232 2222233333333332221 111101 1
Q ss_pred CCCHHHHHHHHHH
Q 042284 416 KRDVDSLMAFVNA 428 (430)
Q Consensus 416 ~~~~~~l~~~i~~ 428 (430)
..+.+++.++|.+
T Consensus 73 ~ls~~e~~~~l~~ 85 (105)
T cd02977 73 ELSDEEALELMAE 85 (105)
T ss_pred CCCHHHHHHHHHh
Confidence 3677888887754
No 331
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=74.02 E-value=21 Score=37.49 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=52.0
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEK 416 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~ 416 (430)
-.++|-+.++.+-|..|..+...++++++.- + ++.+...+.+ ....|++.+..+|+...+.|.| -
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~-ki~~~~~~~~------------~~~~p~~~~~~~~~~~~i~f~g-~ 81 (515)
T TIGR03140 17 LENPVTLVLSAGSHEKSKELLELLDEIASLS-D-KISLTQNTAD------------TLRKPSFTILRDGADTGIRFAG-I 81 (515)
T ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-C-CeEEEEecCC------------cCCCCeEEEecCCcccceEEEe-c
Confidence 3556656555557999999999999987654 3 4666432221 1346999998777654577776 4
Q ss_pred CCHHHHHHHHHHh
Q 042284 417 RDVDSLMAFVNAL 429 (430)
Q Consensus 417 ~~~~~l~~~i~~~ 429 (430)
-.-.+|..||..+
T Consensus 82 P~g~Ef~s~i~~i 94 (515)
T TIGR03140 82 PGGHEFTSLVLAI 94 (515)
T ss_pred CCcHHHHHHHHHH
Confidence 4556777777653
No 332
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=73.09 E-value=26 Score=26.02 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=40.6
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---chHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---HKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRD 418 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~ 418 (430)
+..|+.++|+.|.+.+-.+++. ++.+-.++++.. .+++. +...-..+|+++. .+|. ... ..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~v~~~~~~~~~~~-~~~p~~~vP~l~~-~~~~--~~l-----~e 65 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-------ELDVILYPCPKGSPKRDKFL-EKGGKVQVPYLVD-PNTG--VQM-----FE 65 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-------CCcEEEEECCCChHHHHHHH-HhCCCCcccEEEe-CCCC--eEE-----Ec
Confidence 3457788999999877655544 244444555433 13444 3334568898753 2222 122 34
Q ss_pred HHHHHHHHHH
Q 042284 419 VDSLMAFVNA 428 (430)
Q Consensus 419 ~~~l~~~i~~ 428 (430)
...|.++|++
T Consensus 66 s~~I~~yL~~ 75 (77)
T cd03041 66 SADIVKYLFK 75 (77)
T ss_pred HHHHHHHHHH
Confidence 5678888765
No 333
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=70.41 E-value=76 Score=30.00 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=44.9
Q ss_pred CCCceEcccchHHHHHHhcCCCCcEEEEEeCCCC--HhHHHHHHHHHHHHHHHcC---CCeEEEEEEcCCCchHHHHHh-
Q 042284 317 SQKLVSFRRTGIENLARLQNREDPWLIVLYAPWC--HFCQAMEGSYIELAEQLEG---MGVKVGKFRADGDHKEFAKQK- 390 (430)
Q Consensus 317 ~~~v~~lt~~~f~~~i~~~~~~k~vlV~Fya~wC--~~C~~~~p~~~~la~~~~~---~~v~~~~Vd~~~~~~~l~~~~- 390 (430)
.+....|++.+-+-+-. -+++|-|.+|.+-- +.=..+.+.++++-++|+. .++.+-.||.+.+ ++.. ++
T Consensus 6 ~~k~ysLS~~T~~~L~~---L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~-~~~~-~~~ 80 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKS---LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN-PSEA-EEK 80 (271)
T ss_pred CCCCccCCHHHHHHHHh---CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC-hHHH-HHH
Confidence 35677888766555443 45677777776641 1123344444445444432 2799999999777 6665 44
Q ss_pred ---CCCCC
Q 042284 391 ---LQLVS 395 (430)
Q Consensus 391 ---~~V~~ 395 (430)
++|..
T Consensus 81 ~~~~Gi~~ 88 (271)
T PF09822_consen 81 AKEYGIQP 88 (271)
T ss_pred HHhcCCCc
Confidence 77765
No 334
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=68.79 E-value=64 Score=27.97 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=34.6
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADG 381 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~ 381 (430)
.++.+||-=.|+-|+.--+.. .|+.|.++|++.++.++..-|..
T Consensus 24 ~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcNQ 67 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCNQ 67 (162)
T ss_pred CCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEeccccc
Confidence 688999999999999866433 57888888888788888877754
No 335
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=68.37 E-value=34 Score=25.18 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=44.3
Q ss_pred EEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHH
Q 042284 344 VLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLM 423 (430)
Q Consensus 344 ~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~ 423 (430)
.|+.++|+.|++..-.++.. +-.+.+..++..+....+. +...-..+|++. .+|. . -.+...|.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-----~i~~~~~~v~~~~~~~~~~-~~~p~~~vPvL~--~~g~---~-----l~dS~~I~ 64 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-----GIPYELVPVDPEEKRPEFL-KLNPKGKVPVLV--DDGE---V-----LTDSAAII 64 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-----TEEEEEEEEBTTSTSHHHH-HHSTTSBSSEEE--ETTE---E-----EESHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHc-----CCeEEEeccCcccchhHHH-hhcccccceEEE--ECCE---E-----EeCHHHHH
Confidence 47889999999987544433 2134555666555435666 666777899987 4554 1 13456788
Q ss_pred HHHHH
Q 042284 424 AFVNA 428 (430)
Q Consensus 424 ~~i~~ 428 (430)
++|++
T Consensus 65 ~yL~~ 69 (75)
T PF13417_consen 65 EYLEE 69 (75)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 336
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=68.10 E-value=2.8 Score=32.17 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=45.3
Q ss_pred EeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEE
Q 042284 345 LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401 (430)
Q Consensus 345 Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~ 401 (430)
|-+..-+..+.....++.+.+.+-+..+.+--||+.++ |+++ +.++|-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ-PELA-EEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS-HSHH-TTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC-HhHH-hHCCeeecceEee
Confidence 44555567778888888888876555899999999999 9999 9999999999763
No 337
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=67.48 E-value=12 Score=27.08 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=41.4
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHH
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSL 422 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l 422 (430)
..|+.++|+.|++..-.++...- .+....+|.....+++. +......+|++. .+|. . -.....|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi-----~~~~~~v~~~~~~~~~~-~~~p~~~vP~l~--~~~~---~-----l~es~aI 65 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV-----SVEIIDVDPDNPPEDLA-ELNPYGTVPTLV--DRDL---V-----LYESRII 65 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC-----ccEEEEcCCCCCCHHHH-hhCCCCCCCEEE--ECCE---E-----EEcHHHH
Confidence 46788999999998766544422 23444455544324555 455566899774 2332 1 1344567
Q ss_pred HHHHHH
Q 042284 423 MAFVNA 428 (430)
Q Consensus 423 ~~~i~~ 428 (430)
.++|++
T Consensus 66 ~~yL~~ 71 (73)
T cd03059 66 MEYLDE 71 (73)
T ss_pred HHHHHh
Confidence 777764
No 338
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=66.69 E-value=37 Score=31.95 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=54.9
Q ss_pred CCCcEEEEEeCCCCHh-HHHHHHHHHHHHHHHcCC-Ce----EEEEEEcCCCc-------------------------hH
Q 042284 337 REDPWLIVLYAPWCHF-CQAMEGSYIELAEQLEGM-GV----KVGKFRADGDH-------------------------KE 385 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~-C~~~~p~~~~la~~~~~~-~v----~~~~Vd~~~~~-------------------------~~ 385 (430)
.++.+|++|.=+.||- |-.....+.++.+++..+ .+ .|+.||-+... ..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 4789999999999964 555444444444444331 11 46777654321 35
Q ss_pred HHHHhCCCCCCC-------------EEEEE---eCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 386 FAKQKLQLVSFP-------------TILFF---PKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 386 l~~~~~~V~~~P-------------tl~~~---~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
+| ++|.|.--+ ++++| +.|+ .+++.|-.++.+++.+-|.+
T Consensus 218 va-k~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~--Fvd~~GrN~~~~~~~~~I~~ 273 (280)
T KOG2792|consen 218 VA-KKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGE--FVDYYGRNYDADELADSILK 273 (280)
T ss_pred HH-HHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcc--eehhhcccCCHHHHHHHHHH
Confidence 67 777774322 34444 3444 88888878899998877653
No 339
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.35 E-value=11 Score=28.22 Aligned_cols=55 Identities=11% Similarity=0.124 Sum_probs=35.8
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc-------------h--HHHHHhCCCCCCCEEEEEeCCC
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH-------------K--EFAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~-------------~--~l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
+.|++..||.|..+...++++. +.+-.|++...- + +-+ +.++--++|.+++ .+|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~v-k~~gyiGIPall~-~d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-------VDYDFVEITESMANLKRFLHLRDSRPEFDEV-KSNGYIGIPALLT-DDGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-------CCceeeehhhhhhhHHHHHhhhccchhHHhh-hhcCcccceEEEe-CCCc
Confidence 6799999999999888777763 344445554431 1 113 4556668998864 5565
No 340
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=66.17 E-value=9 Score=32.76 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=27.9
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
...+ ++++|.++||+++ +|+ .+ .+ ..+.++|.++|++
T Consensus 126 ~~~~-~~~~i~~tPt~~i--nG~--~~--~~-~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 126 SQLA-RQLGITGTPTFFI--NGK--YV--VG-PYTIEELKELIDK 162 (162)
T ss_dssp HHHH-HHHT-SSSSEEEE--TTC--EE--ET-TTSHHHHHHHHHH
T ss_pred HHHH-HHcCCccccEEEE--CCE--Ee--CC-CCCHHHHHHHHcC
Confidence 3456 7889999999988 777 32 33 5899999999975
No 341
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=64.48 E-value=18 Score=33.91 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=27.1
Q ss_pred CCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC
Q 042284 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG 369 (430)
Q Consensus 336 ~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~ 369 (430)
..+|+.+++..+.||+.|....=.+-..-..|.+
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 3799999999999999999887555555556655
No 342
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=64.25 E-value=31 Score=29.04 Aligned_cols=71 Identities=7% Similarity=0.105 Sum_probs=39.4
Q ss_pred chHHHHHHhcCCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCC
Q 042284 326 TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKH 405 (430)
Q Consensus 326 ~~f~~~i~~~~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g 405 (430)
+.+++++....+.+.++|.=.-+.- .+++....+.+-....+- +.+.+ + |.+. ++|+|+.+|++++.+++
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~----~~~~T~~~i~~L~~~~~~--~~v~I--d-P~lF-~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDN----GFKATATRIQSLIKDGGK--SGVQI--D-PQWF-KQFDITAVPAFVVVKDG 81 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCC----CHHHHHHHHHHHHhcCCC--CcEEE--C-hHHH-hhcCceEcCEEEEECCC
Confidence 4445554433344444444333322 244444444444333111 23333 3 8999 99999999999999877
Q ss_pred C
Q 042284 406 S 406 (430)
Q Consensus 406 ~ 406 (430)
.
T Consensus 82 ~ 82 (130)
T TIGR02742 82 L 82 (130)
T ss_pred C
Confidence 4
No 343
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=64.19 E-value=9.6 Score=30.93 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=42.2
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc---hHHHHHhCCCCCCCEEEEEeCCCccee--ecCC--C
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH---KEFAKQKLQLVSFPTILFFPKHSAKPV--KYPS--E 415 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~---~~l~~~~~~V~~~Ptl~~~~~g~~~~~--~~~g--g 415 (430)
..|+.++|+.|++....|++- ++.|-.+|+.++. .++. +-++..+.|..-++...+.... .... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~el~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIVEEPPSKEELK-KWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCceEEecccCCcccHHHHH-HHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 468899999999988776652 4677777776551 2222 2223334555555543332110 0110 0
Q ss_pred CCCHHHHHHHHHH
Q 042284 416 KRDVDSLMAFVNA 428 (430)
Q Consensus 416 ~~~~~~l~~~i~~ 428 (430)
..+.+++.++|.+
T Consensus 74 ~~s~~e~~~~l~~ 86 (111)
T cd03036 74 SLSEEEALELLSS 86 (111)
T ss_pred cCCHHHHHHHHHh
Confidence 2455667776643
No 344
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=63.37 E-value=13 Score=26.88 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=33.4
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCC---CchHHHHHhCCCCCCCEEEE
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADG---DHKEFAKQKLQLVSFPTILF 401 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~---~~~~l~~~~~~V~~~Ptl~~ 401 (430)
..|+.++|+.|++..-.+....- .+....+|... ..+++. +......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l-----~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI-----DVPLVTVDLAAGEQRSPEFL-AKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC-----CceEEEeecccCccCCHHHH-hhCCCCCCCEEEe
Confidence 45788999999998876655421 24445555432 114555 5555668999864
No 345
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=63.15 E-value=30 Score=23.94 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=32.4
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCch-HHHHHhCCCCCCCEEEE
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHK-EFAKQKLQLVSFPTILF 401 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~-~l~~~~~~V~~~Ptl~~ 401 (430)
..|+.++|+.|++..-.++...- .+....++...... .+. +...-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i-----~~~~~~~~~~~~~~~~~~-~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL-----PYELVPVDLGEGEQEEFL-ALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-----CcEEEEeCCCCCCCHHHH-hcCCCCCCCEEEE
Confidence 35788999999988776655521 24444555443311 244 4566778998753
No 346
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=63.11 E-value=34 Score=25.12 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=39.3
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC-chHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHH
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD-HKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVD 420 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~-~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~ 420 (430)
+..|+.+.|+.|++.+-.+.+.. +.+-.++++.. ..++. .-....+|++..=..|.. ..- .+..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g-------i~y~~~~~~~~~~~~~~--~~~~~~vP~l~~~~~~~~-~~l-----~eS~ 66 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG-------IPYEVVEVNPVSRKEIK--WSSYKKVPILRVESGGDG-QQL-----VDSS 66 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC-------CceEEEECCchhHHHHH--HhCCCccCEEEECCCCCc-cEE-----EcHH
Confidence 34688899999999885554442 33333344321 02333 335568998864321111 111 2456
Q ss_pred HHHHHHHH
Q 042284 421 SLMAFVNA 428 (430)
Q Consensus 421 ~l~~~i~~ 428 (430)
.|.++|++
T Consensus 67 ~I~~yL~~ 74 (77)
T cd03040 67 VIISTLKT 74 (77)
T ss_pred HHHHHHHH
Confidence 67777765
No 347
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=63.07 E-value=13 Score=30.32 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=25.5
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD 382 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~ 382 (430)
..|+.++|+.|++....+++- ++.+-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-------GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCceEEEecCCC
Confidence 468899999999998777662 467777887665
No 348
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=62.58 E-value=12 Score=31.41 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=24.3
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD 382 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~ 382 (430)
+..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCC
Confidence 4568899999999987666543 356666776544
No 349
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=62.23 E-value=1.1e+02 Score=27.05 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=53.6
Q ss_pred HHHH-HHHHHHhcCCCcEEEEecCCCCCHHHHH----HHHHHHHHhCCcEEEEccCchHHHHHHHhcCCCCCCccchhhh
Q 042284 84 EDVV-LIEYAKLTGRPFRVFSLDTGRLNPETHQ----FFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQEC 158 (430)
Q Consensus 84 KDS~-vl~l~~~~~~~i~vi~~DTg~~fpet~~----~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~c 158 (430)
=||+ ++..+...+.++.++|-|..++..+-+. -++++++.+|+++++-.-+...|...+. |...-++.+ ..|
T Consensus 9 PCs~~~~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~--~~e~epE~g-~RC 85 (176)
T PF02677_consen 9 PCSTYPLERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVK--GLEDEPEGG-KRC 85 (176)
T ss_pred cccHHHHHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHh--hCccCCccC-chh
Confidence 3553 4555666688999999999988765443 3567778889988665444444444443 333223322 234
Q ss_pred --hhhhchHHHHHHHh--cCceE
Q 042284 159 --CRIRKVRPLKRALK--GLRAW 177 (430)
Q Consensus 159 --c~~~K~~pl~~~~~--~~~~~ 177 (430)
|..+.++-..+..+ |++.+
T Consensus 86 ~~Cy~~RL~~tA~~A~e~gfd~F 108 (176)
T PF02677_consen 86 RVCYDLRLEKTAQYAKELGFDYF 108 (176)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEE
Confidence 66555555554444 55543
No 350
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=61.13 E-value=16 Score=32.40 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=24.6
Q ss_pred EEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEE
Q 042284 344 VLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGK 376 (430)
Q Consensus 344 ~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~ 376 (430)
+|..|.|+.|-.+.|.+.++...+++ .+.+-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~~ 33 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFRF 33 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEEE
Confidence 58999999999999999999999987 454443
No 351
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=61.08 E-value=72 Score=32.70 Aligned_cols=73 Identities=12% Similarity=0.288 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 59 ASPLEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 59 ~~~~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
.+..+.++..+..+ +..-+|+|++|.....+.+.....+.-.||. +...|..|..+.+....++|+++..+..
T Consensus 60 nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 45677888877765 4456889999988865533332444445554 3456899999999988999999887765
No 352
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.82 E-value=23 Score=34.77 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=49.5
Q ss_pred hhhhhhhchHHHHHHHh--cCceEEEeeeccCCcccccCCCee-------eecCCCCcccCCCCCeEEEecccccchHHH
Q 042284 156 QECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVV-------QIDTSFEGIDGGKGSLVKWNPLANVKGQDI 226 (430)
Q Consensus 156 ~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~-------~~d~~~~~~~~~~~~~~~~~Pi~dWt~~dV 226 (430)
..--.+.|..-++.+.. |+..++.|--.++-. ++....+. .++-... .....+.+.-++||-|....||
T Consensus 177 qDLl~~lk~kll~~vA~~~g~~~i~~g~~~t~la-~~vlt~v~~GRG~sis~~v~~~-d~r~~~d~~llrPLrDl~~~Ei 254 (396)
T KOG2594|consen 177 QDLLLHLKMKLLQKVAAENGYNRIVLGDSTTDLA-SHVLTAVVKGRGGSISTDVQVV-DKRPKGDVKLLRPLRDLLSLEI 254 (396)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEecCchhHHH-HHHHHHHHhccCccceehhhhh-ccccCCCceeehhHHHHHHHHH
Confidence 34556677777777776 667777776555542 22211111 1110000 0011234778999999999999
Q ss_pred HHHHHHcCCCC
Q 042284 227 WNFLRAMNIPI 237 (430)
Q Consensus 227 w~yi~~~~lp~ 237 (430)
..|+...||+|
T Consensus 255 ~~y~~l~~l~~ 265 (396)
T KOG2594|consen 255 TSYCLLDGLAY 265 (396)
T ss_pred HHHHHhhcCCc
Confidence 99999999997
No 353
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.80 E-value=17 Score=33.49 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=30.0
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
...+ ++++|+++|+|+| +++ ....| ..+.+.|...|+++
T Consensus 174 ~~~A-~e~gI~gVP~fv~--d~~---~~V~G-aq~~~v~~~al~~~ 212 (225)
T COG2761 174 EAAA-QEMGIRGVPTFVF--DGK---YAVSG-AQPYDVLEDALRQL 212 (225)
T ss_pred HHHH-HHCCCccCceEEE--cCc---EeecC-CCCHHHHHHHHHHH
Confidence 3456 7999999999998 444 55556 68889898888765
No 354
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.05 E-value=19 Score=32.41 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=31.7
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCCcceeecCCC--CCCHHHHHHHHHH
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSE--KRDVDSLMAFVNA 428 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg--~~~~~~l~~~i~~ 428 (430)
..++ +++++.++||+++-.+|+. .....| ..+.+++..++.+
T Consensus 164 r~l~-~rlg~~GfPTl~le~ng~~--~~l~~g~y~~~~~~~~arl~~ 207 (212)
T COG3531 164 RRLM-QRLGAAGFPTLALERNGTM--YVLGTGAYFGSPDAWLARLAQ 207 (212)
T ss_pred HHHH-HHhccCCCCeeeeeeCCce--EeccCCcccCCcHHHHHHHHH
Confidence 5678 8999999999999999984 333332 4567788877764
No 355
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=57.42 E-value=11 Score=30.39 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=23.8
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD 382 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~ 382 (430)
..|+.|+|+.|++....|++- ++.|-.+|..+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccC
Confidence 568899999999988766543 355666666554
No 356
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.35 E-value=31 Score=34.10 Aligned_cols=81 Identities=10% Similarity=0.206 Sum_probs=59.0
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEK 416 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~ 416 (430)
.+..-+=-|++-.|..|-.....++-++-..+ ++.-..||---. ++-. +.-+|.++||+++ ||+ . +..|.
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp--~I~H~~IdGa~F-q~Ev-ear~IMaVPtvfl--nGe--~--fg~GR 184 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNP--RIKHTAIDGALF-QDEV-EARNIMAVPTVFL--NGE--E--FGQGR 184 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCC--CceeEEecchhh-HhHH-HhccceecceEEE--cch--h--hcccc
Confidence 45567777888899999999988887765555 488889987766 4445 5668999999754 776 2 22346
Q ss_pred CCHHHHHHHHH
Q 042284 417 RDVDSLMAFVN 427 (430)
Q Consensus 417 ~~~~~l~~~i~ 427 (430)
++.++|..-|.
T Consensus 185 mtleeilaki~ 195 (520)
T COG3634 185 MTLEEILAKID 195 (520)
T ss_pred eeHHHHHHHhc
Confidence 77888776654
No 357
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=56.88 E-value=9.3 Score=30.71 Aligned_cols=25 Identities=8% Similarity=0.260 Sum_probs=23.4
Q ss_pred EEecccccchHHHHHHHHHcCCCCc
Q 042284 214 KWNPLANVKGQDIWNFLRAMNIPIN 238 (430)
Q Consensus 214 ~~~Pi~dWt~~dVw~yi~~~~lp~~ 238 (430)
|+.||+.-++.||-.|...+|||+.
T Consensus 3 rIRPL~~v~E~ei~~ya~~~~lp~~ 27 (104)
T TIGR00269 3 RIKPLRYIPEKEVVLYAFLNELKVH 27 (104)
T ss_pred cccccccCCHHHHHHHHHHcCCCcC
Confidence 7899999999999999999999865
No 358
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=56.49 E-value=27 Score=31.85 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCCcEEEEEeCCCC-HhHHHHHHHHHHHHHHHc-C--CCe--EEEEEEcCCCchHHH
Q 042284 337 REDPWLIVLYAPWC-HFCQAMEGSYIELAEQLE-G--MGV--KVGKFRADGDHKEFA 387 (430)
Q Consensus 337 ~~k~vlV~Fya~wC-~~C~~~~p~~~~la~~~~-~--~~v--~~~~Vd~~~~~~~l~ 387 (430)
.+++++|+|.=+.| ..|-.+...+..+.+++. . .++ .++.||-+...++..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~l 122 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVL 122 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHH
Confidence 68999999987888 468888888888888877 2 344 555555444334443
No 359
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=56.12 E-value=36 Score=32.87 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=77.8
Q ss_pred cccccCCCC-----Ccccccchhhh-ccCCCccccccCCCCCCCCCC------CCCCceEcccchHHHHHHhcC-CCCcE
Q 042284 275 AKECGLHNG-----NIKQEELSQHI-NINGNGVAQHTNGSAPASDLF------NSQKLVSFRRTGIENLARLQN-REDPW 341 (430)
Q Consensus 275 ~~e~g~~~~-----~i~~~~~~~~~-n~~~~~~~~~~~~~~~~~~~~------~~~~v~~lt~~~f~~~i~~~~-~~k~v 341 (430)
+++|.-+.. .|.+|||-++| |+--. +.+|.|..++..+. .+..|.++. +.+++..... +.+.+
T Consensus 55 ~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~--~rEYRg~RsVeaL~efi~kq~s~~i~Ef~--sl~~l~n~~~p~K~~v 130 (375)
T KOG0912|consen 55 KVDCDKEDDIADKYHINKYPTLKVFRNGEMM--KREYRGQRSVEALIEFIEKQLSDPINEFE--SLDQLQNLDIPSKRTV 130 (375)
T ss_pred EcccchhhHHhhhhccccCceeeeeeccchh--hhhhccchhHHHHHHHHHHHhccHHHHHH--hHHHHHhhhccccceE
Confidence 477765543 58899999998 66644 46888888887764 223333332 2233322223 34556
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcce-eecCCCCCCHH
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKP-VKYPSEKRDVD 420 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~-~~~~gg~~~~~ 420 (430)
+.+|-...-+.-. .+.++|..+.+ ...|.. -.. ++. ....-.+.+ +++|+++.... ..|.|...+.+
T Consensus 131 IgyF~~kdspey~----~~~kva~~lr~-dc~f~V-~~g----D~~-~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~ 198 (375)
T KOG0912|consen 131 IGYFPSKDSPEYD----NLRKVASLLRD-DCVFLV-GFG----DLL-KPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFD 198 (375)
T ss_pred EEEeccCCCchHH----HHHHHHHHHhh-ccEEEe-ecc----ccc-cCCCCCCCc-eEEeCCCcCCcCcccccccccHH
Confidence 6666545555433 45677777777 333332 111 111 222223333 45565554321 25888778899
Q ss_pred HHHHHHHH
Q 042284 421 SLMAFVNA 428 (430)
Q Consensus 421 ~l~~~i~~ 428 (430)
.+.+||.+
T Consensus 199 el~~Wi~d 206 (375)
T KOG0912|consen 199 ELKQWIQD 206 (375)
T ss_pred HHHHHHHh
Confidence 99999975
No 360
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=55.32 E-value=20 Score=31.57 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=27.3
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
.+.+ .+++|.++||+++ +|+ ..+.| ....+.|.+.|+
T Consensus 157 ~~~a-~~~gv~GvP~~vv--~g~---~~~~G-~~~~~~l~~~l~ 193 (193)
T PF01323_consen 157 TAEA-RQLGVFGVPTFVV--NGK---YRFFG-ADRLDELEDALQ 193 (193)
T ss_dssp HHHH-HHTTCSSSSEEEE--TTT---EEEES-CSSHHHHHHHH-
T ss_pred HHHH-HHcCCcccCEEEE--CCE---EEEEC-CCCHHHHHHHhC
Confidence 4566 7899999999999 555 44445 577888887763
No 361
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=54.54 E-value=10 Score=33.56 Aligned_cols=19 Identities=26% Similarity=0.773 Sum_probs=15.7
Q ss_pred hHHHHHhCCCCCCCEEEEEe
Q 042284 384 KEFAKQKLQLVSFPTILFFP 403 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~ 403 (430)
..++ ++++|+++||+++|.
T Consensus 137 ~~la-~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 137 QQLA-REMGITGFPTLVIFN 155 (176)
T ss_dssp HHHH-HHTT-SSSSEEEEE-
T ss_pred HHHH-HHcCCCCCCEEEEEe
Confidence 5788 899999999999998
No 362
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=53.86 E-value=31 Score=29.26 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=45.5
Q ss_pred cEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCC----CCCEEEEEeCCCcceeecCCC
Q 042284 340 PWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLV----SFPTILFFPKHSAKPVKYPSE 415 (430)
Q Consensus 340 ~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~----~~Ptl~~~~~g~~~~~~~~gg 415 (430)
.-++.|++|.|+-|......++ .+ .+.+-.+..++. ..+- ++++|. +==|.++ +|. .+. |
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-----~~--Gf~Vk~~~~~d~-~alK-~~~gIp~e~~SCHT~VI--~Gy--~vE--G- 89 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-----AN--GFEVKVVETDDF-LALK-RRLGIPYEMQSCHTAVI--NGY--YVE--G- 89 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-----hC--CcEEEEeecCcH-HHHH-HhcCCChhhccccEEEE--cCE--EEe--c-
Confidence 4566799999999998766554 12 477777776666 5555 777763 2333332 454 222 2
Q ss_pred CCCHHHHHHHHHH
Q 042284 416 KRDVDSLMAFVNA 428 (430)
Q Consensus 416 ~~~~~~l~~~i~~ 428 (430)
-..++.+..++++
T Consensus 90 HVPa~aI~~ll~~ 102 (149)
T COG3019 90 HVPAEAIARLLAE 102 (149)
T ss_pred cCCHHHHHHHHhC
Confidence 4567778777753
No 363
>PRK12559 transcriptional regulator Spx; Provisional
Probab=53.77 E-value=22 Score=29.82 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=23.4
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD 382 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~ 382 (430)
+..|+.|+|+.|++....|++- ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCeEEEEeeCC
Confidence 4578899999999987665543 355555665443
No 364
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=53.11 E-value=1.4e+02 Score=30.32 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHcC-CcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCch
Q 042284 59 ASPLEIMDKAFQKFG-NDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAV 136 (430)
Q Consensus 59 ~~~~~~i~~~~~~~~-~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~ 136 (430)
....+.+++.+.... ..-+++||.|--+..+.+..-..+.-.|+..+. .|-.|+.+.+++.+++|+++..+.|...
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~--~YG~t~~~~~~~l~~~gi~~~~~d~~~~ 138 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDD--LYGGTYRLFEKILQKFGVEVTFVDPGDD 138 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCC--ccchHHHHHHHHHHhcCeEEEEECCCCh
Confidence 455667777766654 457889987766543323333333445555555 5889999999999999999987776554
No 365
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=52.32 E-value=2.4e+02 Score=27.92 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=62.6
Q ss_pred CCceEcccc-hHHHHHHhcCCCCcEEEEEeCCC-CHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCC
Q 042284 318 QKLVSFRRT-GIENLARLQNREDPWLIVLYAPW-CHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395 (430)
Q Consensus 318 ~~v~~lt~~-~f~~~i~~~~~~k~vlV~Fya~w-C~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~ 395 (430)
.+|..++.+ +++.+-. . ...+-||=|+.+- ..+ ...|+++|+.++. -+.|.++ -+ +.++ ++++++
T Consensus 146 dPVeiIn~~~e~~~Fe~-i-ed~~klIGyFk~~~s~~----yk~FeeAAe~F~p-~IkFfAt---fd-~~vA-k~L~lK- 212 (383)
T PF01216_consen 146 DPVEIINNKHELKAFER-I-EDDIKLIGYFKSEDSEH----YKEFEEAAEHFQP-YIKFFAT---FD-KKVA-KKLGLK- 212 (383)
T ss_dssp SSEEEE-SHHHHHHHHH----SS-EEEEE-SSTTSHH----HHHHHHHHHHCTT-TSEEEEE----S-HHHH-HHHT-S-
T ss_pred cchhhhcChhhhhhhhh-c-ccceeEEEEeCCCCcHH----HHHHHHHHHhhcC-ceeEEEE---ec-chhh-hhcCcc-
Confidence 457667653 3333322 1 3357777777664 334 3357789999987 6887765 34 8899 899996
Q ss_pred CCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 396 ~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
+=.+-+|.+=...++...+...+.++|.+||++.
T Consensus 213 ~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h 246 (383)
T PF01216_consen 213 LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEH 246 (383)
T ss_dssp TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT
T ss_pred ccceeeeccccCCCccCCCCCCCHHHHHHHHHHh
Confidence 7788899876656888888778999999999864
No 366
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=52.19 E-value=27 Score=28.47 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=24.5
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD 382 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~ 382 (430)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCC
Confidence 3468889999999988777663 356666676544
No 367
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=52.00 E-value=22 Score=25.75 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=36.8
Q ss_pred EEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHH
Q 042284 344 VLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLM 423 (430)
Q Consensus 344 ~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~ 423 (430)
.|+.++|++|++.+-.+... +-.+....++.... .... +...-..+|++.. .+|. . -.....|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----gl~~~~~~~~~~~~-~~~~-~~~~~~~vP~L~~-~~~~---~-----l~es~aI~ 66 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----NIPVEQIILQNDDE-ATPI-RMIGAKQVPILEK-DDGS---F-----MAESLDIV 66 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----CCCeEEEECCCCch-HHHH-HhcCCCccCEEEe-CCCe---E-----eehHHHHH
Confidence 57789999999877655443 21233334443322 2333 3334457898743 3233 1 12356677
Q ss_pred HHHH
Q 042284 424 AFVN 427 (430)
Q Consensus 424 ~~i~ 427 (430)
+||+
T Consensus 67 ~yL~ 70 (71)
T cd03037 67 AFID 70 (71)
T ss_pred HHHh
Confidence 7765
No 368
>PRK09028 cystathionine beta-lyase; Provisional
Probab=51.78 E-value=1.5e+02 Score=29.87 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=45.6
Q ss_pred HHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 62 LEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 62 ~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
.+.++..+... +..-++.++||..+..+.+.....+.-.|+..|.. |+.+..+.....+++|+++..+.+.
T Consensus 63 ~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~--Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 63 HFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSC--YEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCC--cHHHHHHHHHhhhhcceEEEEECCC
Confidence 45555555443 22245678888887544222224444556666664 8999998888888899988777654
No 369
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=51.67 E-value=37 Score=29.88 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=34.1
Q ss_pred CCCcEEEEEeCCCC-HhHHHHHHHHHHHHHHHcC--CCeEEEEEEcCC
Q 042284 337 REDPWLIVLYAPWC-HFCQAMEGSYIELAEQLEG--MGVKVGKFRADG 381 (430)
Q Consensus 337 ~~k~vlV~Fya~wC-~~C~~~~p~~~~la~~~~~--~~v~~~~Vd~~~ 381 (430)
.+|+++|.|.=+.| ..|-.+...+.++.+.+.. .++.++.|.+|-
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 58999999999989 6788888888888777654 367777776663
No 370
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=50.14 E-value=40 Score=29.46 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=32.7
Q ss_pred cEEEEecCCCCC-HHHHHHHHHHHHHhCCcEEEEccCchHHHHH
Q 042284 99 FRVFSLDTGRLN-PETHQFFDTVEKHYGIRIEYTFPNAVEVQAL 141 (430)
Q Consensus 99 i~vi~~DTg~~f-pet~~~~~~~~~~~gl~i~~~~p~~~~~~~~ 141 (430)
-.++++|||... ++-.+.++++++.+++++++..-....++.+
T Consensus 119 ~~~~~Idtg~~~~~~~~~~~~~~a~~~~l~~~~~~g~l~~l~~l 162 (166)
T PF07796_consen 119 KRVVLIDTGVYDEEDFEEKVREFAEFLGLPIEEIPGDLDLLEKL 162 (166)
T ss_pred CeEEEEecccccchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHH
Confidence 458999999864 4568899999999999998875554444443
No 371
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=49.15 E-value=1e+02 Score=23.54 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=33.6
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEE
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~ 401 (430)
+..|+.+.|+.|+...-.++.. +-.+.+..+|.......+. +......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~~~~~~~-~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKDKPDWFL-EKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCCCcHHHH-hhCCCCCcCEEEE
Confidence 4557788899999876555443 2134555666544323455 4555678999863
No 372
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=48.83 E-value=1.8e+02 Score=29.17 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 61 PLEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 61 ~~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
..+.++..+..+ +.+-++.+++|.....+.+..-.++.-.|+..|. .|+.+..+++...+.+|+++..+.+.
T Consensus 51 t~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~--~y~~t~~~~~~~~~~~gi~v~~~d~~ 123 (377)
T TIGR01324 51 THFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDS--AYEPTRYFCDIVLKRMGVDITYYDPL 123 (377)
T ss_pred cHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCC--CcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 345555555543 3335667888887655433333455556666654 47889999988888999998777554
No 373
>PRK08114 cystathionine beta-lyase; Provisional
Probab=47.98 E-value=1.5e+02 Score=29.91 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHcC-CcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 59 ASPLEIMDKAFQKFG-NDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 59 ~~~~~~i~~~~~~~~-~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
....+.++..+.... ..-++.|+.|--+..+-+..-..+.-.|+.. ...|..|+.+.+++.+++|+++..+.+.
T Consensus 61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~--~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~ 135 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMT--GTAYEPTQDFCSKILSKLGVTTTWFDPL 135 (395)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEe--CCCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 445666776666543 4477888878776443222223343445544 3468999999999999999999888654
No 374
>PHA02053 hypothetical protein
Probab=47.86 E-value=49 Score=26.06 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=10.7
Q ss_pred EEEEec-hhHHHHHHH
Q 042284 76 IAIAFS-GAEDVVLIE 90 (430)
Q Consensus 76 i~vs~S-GGKDS~vl~ 90 (430)
++.+-| |.+||++-+
T Consensus 82 VIysr~lGS~DsVmWn 97 (115)
T PHA02053 82 VIYSRSLGSYDSVMWN 97 (115)
T ss_pred eeeecCCCchhHHHHH
Confidence 555555 999998753
No 375
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=47.82 E-value=94 Score=28.78 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=32.3
Q ss_pred ceeecCCCChhhHHHHHHhccCCCHHHHHHHHHHHcCCcEEEEechh-HHHHHH
Q 042284 37 EGRIESTNDHEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGA-EDVVLI 89 (430)
Q Consensus 37 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~i~vs~SGG-KDS~vl 89 (430)
...+.++.++++...+.+.+ .+.|+......+..+.++.+|| |=+.+.
T Consensus 81 g~~l~DI~t~~d~~~~~~~I-----~~~i~~l~~~~~~~lh~sIAGGRKtMs~~ 129 (224)
T PF09623_consen 81 GLPLDDIRTEEDNEAFADFI-----YRLIRELKQDPGRRLHVSIAGGRKTMSFY 129 (224)
T ss_pred CccccccCCHHHHHHHHHHH-----HHHHHHHhhCCCCeEEEEecCChHHHHHH
Confidence 34557777777777766554 4456666666667799999988 655443
No 376
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=46.50 E-value=27 Score=29.26 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=26.3
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
..++ .+++|.++||+++ +|+ .+.| ..+.+.|.+.|+
T Consensus 119 ~~~~-~~~gi~gtPt~~v--~g~----~~~G-~~~~~~l~~~i~ 154 (154)
T cd03023 119 RQLA-RALGITGTPAFII--GDT----VIPG-AVPADTLKEAID 154 (154)
T ss_pred HHHH-HHcCCCcCCeEEE--CCE----EecC-CCCHHHHHHHhC
Confidence 4567 7899999999776 453 3445 678888887763
No 377
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=46.49 E-value=27 Score=25.27 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=32.7
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---chHHHHHhCCCCCCCEEE
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---HKEFAKQKLQLVSFPTIL 400 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---~~~l~~~~~~V~~~Ptl~ 400 (430)
..|+.+.|+.|+...-.++...- .+....+|..+. .+++. +......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi-----~~e~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL-----ELNLKEVNLMKGEHLKPEFL-KLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC-----CCEEEEecCccCCcCCHHHH-hhCcCCCCCEEE
Confidence 46889999999987755554421 345555654332 14555 555566899985
No 378
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.35 E-value=65 Score=25.72 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCC-CCCCCEE-EEEeCCC
Q 042284 347 APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQ-LVSFPTI-LFFPKHS 406 (430)
Q Consensus 347 a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~-V~~~Ptl-~~~~~g~ 406 (430)
.|-|+.+.+....+.... .+.|+.||+-.+ +++. +... ...+||+ -+|-+|+
T Consensus 27 ~P~CGFS~~~vqiL~~~g------~v~~~~vnVL~d-~eiR-~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 27 FPQCGFSAQAVQILSACG------VVDFAYVDVLQD-PEIR-QGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred CCCCCccHHHHHHHHHcC------CcceeEEeeccC-HHHH-hccHhhcCCCCCceeeECCE
Confidence 478888888776655442 167999999988 8887 5543 2456765 3566776
No 379
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=44.33 E-value=41 Score=31.18 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=39.1
Q ss_pred CCCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC---CCeEEEEEEcCCC
Q 042284 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG---MGVKVGKFRADGD 382 (430)
Q Consensus 336 ~~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~---~~v~~~~Vd~~~~ 382 (430)
..+.++||-+-..+|..|..-...++.|..++.. .+|.|+.||-...
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 3678889999999999999999999999888754 3799999986544
No 380
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.05 E-value=47 Score=30.71 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=25.5
Q ss_pred CCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcC
Q 042284 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG 369 (430)
Q Consensus 338 ~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~ 369 (430)
.+..++.|+...|++|+...|.+++.......
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 37888999999999998888888876555544
No 381
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=43.56 E-value=1.6e+02 Score=29.73 Aligned_cols=82 Identities=13% Similarity=0.280 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCc-h
Q 042284 59 ASPLEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNA-V 136 (430)
Q Consensus 59 ~~~~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~-~ 136 (430)
....+.++..+... +..-++.||.|--+..+.+.....+.-.++..+ ..|..|+++++++..++|+++..+.+.. .
T Consensus 54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~--~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~ 131 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASD--DLYGGTYRLLEELLPRFGVEVTFVDPTDLE 131 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEES--SSSHHHHHHHHHCHHHTTSEEEEESTTSHH
T ss_pred cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecC--CccCcchhhhhhhhcccCcEEEEeCchhHH
Confidence 34455666555443 334567777666654333333344445566655 4699999999999999999998887744 3
Q ss_pred HHHHHH
Q 042284 137 EVQALV 142 (430)
Q Consensus 137 ~~~~~~ 142 (430)
.++..+
T Consensus 132 ~l~~~l 137 (386)
T PF01053_consen 132 ALEAAL 137 (386)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 344444
No 382
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=42.87 E-value=1.9e+02 Score=23.70 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=47.8
Q ss_pred eCC--CCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCc-----------hHHHHHhCCCC--CCCEEEEEeCCCccee
Q 042284 346 YAP--WCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH-----------KEFAKQKLQLV--SFPTILFFPKHSAKPV 410 (430)
Q Consensus 346 ya~--wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~-----------~~l~~~~~~V~--~~Ptl~~~~~g~~~~~ 410 (430)
+|| .-+.=+.....+++-...+.+.++.++.+--+... ..+. ++|++. ++-.+++=++|+. ..
T Consensus 16 ~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~~~~f~~vLiGKDG~v-K~ 93 (118)
T PF13778_consen 16 FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIPPGGFTVVLIGKDGGV-KL 93 (118)
T ss_pred ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCCCCceEEEEEeCCCcE-EE
Confidence 454 44555555666666555555556777666222221 2677 788864 3334444466763 34
Q ss_pred ecCCCCCCHHHHHHHHHHh
Q 042284 411 KYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 411 ~~~gg~~~~~~l~~~i~~~ 429 (430)
.+.. ..+.++|.+.|+++
T Consensus 94 r~~~-p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 94 RWPE-PIDPEELFDTIDAM 111 (118)
T ss_pred ecCC-CCCHHHHHHHHhCC
Confidence 4444 78999999999864
No 383
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=42.16 E-value=48 Score=29.13 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=30.0
Q ss_pred EEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEE
Q 042284 341 WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFR 378 (430)
Q Consensus 341 vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd 378 (430)
.|.+|+..-||+|-...+.+.++.+.+.+-.+.+.-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 36789999999999999999999999954234444444
No 384
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=41.64 E-value=82 Score=25.52 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=38.3
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD 382 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~ 382 (430)
+++++||.=.|+.|+.-. -...|++|.++|++.++.++..=|...
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 578899888999999988 666899999999866799999988653
No 385
>PRK05967 cystathionine beta-lyase; Provisional
Probab=41.60 E-value=2.6e+02 Score=28.29 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCc
Q 042284 59 ASPLEIMDKAFQK-FGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNA 135 (430)
Q Consensus 59 ~~~~~~i~~~~~~-~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~ 135 (430)
.+..+.++..+.. .+..-++.++.|.....+.+.....+.-.|+..+.+ |+.+..++.++.+++|+++..+.+..
T Consensus 63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~--Y~~~~~l~~~~l~~~Gi~v~~vd~~~ 138 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSV--YYPTRHFCDTMLKRLGVEVEYYDPEI 138 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCC--cHHHHHHHHHHHHhcCeEEEEeCCCC
Confidence 4445566666644 223345666666654333333334555566666554 88899999999999999998886543
No 386
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=40.82 E-value=2.4e+02 Score=28.20 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=46.4
Q ss_pred HHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchHHHH
Q 042284 62 LEIMDKAFQK-FGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQA 140 (430)
Q Consensus 62 ~~~i~~~~~~-~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~~~~ 140 (430)
.+.+++.+.. ++.+-++.+++|.....+.+.....+.-.|+.. ...|+.+..+++.+ ..+|+++....++...+++
T Consensus 55 ~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~--~~~y~~~~~~~~~~-~~~g~~v~~~~~d~~~l~~ 131 (385)
T PRK08574 55 LRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLP--MEAYGTTLRLLKSL-EKFGVKVVLAYPSTEDIIE 131 (385)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEc--CCCchhHHHHHHHh-hccCcEEEEECCCHHHHHH
Confidence 4445554444 343345778888876544333334444445543 35688888888776 7789888776666544444
Q ss_pred HH
Q 042284 141 LV 142 (430)
Q Consensus 141 ~~ 142 (430)
.+
T Consensus 132 ~i 133 (385)
T PRK08574 132 AI 133 (385)
T ss_pred hc
Confidence 43
No 387
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.10 E-value=2e+02 Score=25.99 Aligned_cols=92 Identities=17% Similarity=0.314 Sum_probs=57.8
Q ss_pred CCcEEEEEe-CCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---------------------------chHHHHH
Q 042284 338 EDPWLIVLY-APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---------------------------HKEFAKQ 389 (430)
Q Consensus 338 ~k~vlV~Fy-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---------------------------~~~l~~~ 389 (430)
++.+++.|| ++.-..|-.....|.+...+++..++.++.+.+|.. +.+++ +
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs-~ 111 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIA-R 111 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHH-H
Confidence 355555555 566777777778888888888776777777766532 15677 7
Q ss_pred hCCCCC------CCEEEEEeCCCc-ceee-cCCC-CCCHHHHHHHHHHhC
Q 042284 390 KLQLVS------FPTILFFPKHSA-KPVK-YPSE-KRDVDSLMAFVNALR 430 (430)
Q Consensus 390 ~~~V~~------~Ptl~~~~~g~~-~~~~-~~gg-~~~~~~l~~~i~~~~ 430 (430)
.|++-. +=.++++++.+. +.+. +..+ .++.+++...|+.++
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred HcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 887753 223555554442 2111 2111 389999999888764
No 388
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.08 E-value=41 Score=29.92 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=26.4
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHH
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i 426 (430)
.+.+ .+.+|.++||+++ +|+ ....| ..+.+.|.+.|
T Consensus 165 ~~~a-~~~gv~G~Pt~vv--~g~---~~~~G-~~~~~~~~~~i 200 (201)
T cd03024 165 EARA-RQLGISGVPFFVF--NGK---YAVSG-AQPPEVFLQAL 200 (201)
T ss_pred HHHH-HHCCCCcCCEEEE--CCe---EeecC-CCCHHHHHHHh
Confidence 4566 7889999999988 554 23445 68888888766
No 389
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.04 E-value=2.6e+02 Score=25.20 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred hhHHH-HHHHHHHhcCCCcEEEEecCCCCCHHHHHH----HHHHHHHhCCcEEEEcc-CchHHHHHHHhcCCCCCCccch
Q 042284 82 GAEDV-VLIEYAKLTGRPFRVFSLDTGRLNPETHQF----FDTVEKHYGIRIEYTFP-NAVEVQALVRTKGLFSFYEDGH 155 (430)
Q Consensus 82 GGKDS-~vl~l~~~~~~~i~vi~~DTg~~fpet~~~----~~~~~~~~gl~i~~~~p-~~~~~~~~~~~~g~~~~~~~~~ 155 (430)
-+=|| .+|..+...+.++.++|.|..+++-.-|.. .+++++++|+++..-.- +...|.+ ..+|+...++.+.
T Consensus 12 CAPcs~y~le~l~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w~~--~vKg~E~EpE~G~ 89 (204)
T COG1636 12 CAPCSGYVLEKLRDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKWFE--RVKGMEDEPEGGK 89 (204)
T ss_pred cCCCcHHHHHHHHhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHHHH--HhhcchhCCCCCc
Confidence 45566 456556666888999999999987665554 46778888987753322 2222333 3445544444433
Q ss_pred h-hhhhhhchHHHHHHHh--cCc
Q 042284 156 Q-ECCRIRKVRPLKRALK--GLR 175 (430)
Q Consensus 156 ~-~cc~~~K~~pl~~~~~--~~~ 175 (430)
| .-|..+..+-...... |++
T Consensus 90 RC~~Cfd~Rle~tA~~A~e~G~d 112 (204)
T COG1636 90 RCTMCFDMRLEKTAKKAKELGFD 112 (204)
T ss_pred hhHhHHHHHHHHHHHHHHHcCCc
Confidence 2 2266665555444444 555
No 390
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=39.59 E-value=52 Score=27.64 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=23.2
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD 382 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~ 382 (430)
+..|+.|+|+.|++....|++- ++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEECCCC
Confidence 3467889999999977655432 356666666543
No 391
>PRK07050 cystathionine beta-lyase; Provisional
Probab=39.53 E-value=2.6e+02 Score=28.09 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 60 SPLEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 60 ~~~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
...+.++..+.++ +.+-++.++||..+..+.+.....+.-.|+..+ ..|+.+..+.+.+...+|+++..+.+.
T Consensus 65 pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~ 138 (394)
T PRK07050 65 PTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPL 138 (394)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCC
Confidence 3355666666554 444677889998875442222244555566554 357788888888899999988777543
No 392
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=39.42 E-value=91 Score=26.71 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=26.1
Q ss_pred EEEechhHHHH---HHHHHHhcC-CCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 042284 77 AIAFSGAEDVV---LIEYAKLTG-RPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYT 131 (430)
Q Consensus 77 ~vs~SGGKDS~---vl~l~~~~~-~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~ 131 (430)
.|+||||. .. +..++.... ..+. +.++||..+++.. +++.+. +++.+.
T Consensus 64 gVt~SGGE-l~~~~l~~ll~~lk~~Gl~-i~l~Tg~~~~~~~---~~il~~--iD~l~~ 115 (147)
T TIGR02826 64 CVLFLGGE-WNREALLSLLKIFKEKGLK-TCLYTGLEPKDIP---LELVQH--LDYLKT 115 (147)
T ss_pred EEEEechh-cCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHH---HHHHHh--CCEEEE
Confidence 69999999 31 112333321 2333 5688997777643 344443 344444
No 393
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.82 E-value=1.1e+02 Score=25.35 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=30.0
Q ss_pred HHHHHHHHHHc--CCcEEEEechhH----------HHHHH-----HHHHhcCCCcEEEEecCCC
Q 042284 62 LEIMDKAFQKF--GNDIAIAFSGAE----------DVVLI-----EYAKLTGRPFRVFSLDTGR 108 (430)
Q Consensus 62 ~~~i~~~~~~~--~~~i~vs~SGGK----------DS~vl-----~l~~~~~~~i~vi~~DTg~ 108 (430)
.+-++..++.+ ++.+.+.|+|+| |++.. ..+..+..++.+|++|.|.
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 44555555555 245999999999 34433 2223355678888888883
No 394
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=36.39 E-value=3.7e+02 Score=26.95 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 61 PLEIMDKAFQK-FGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 61 ~~~~i~~~~~~-~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
..+.++..+.. ++.+-++.++||..+..+.+.....+.-.|+.. ...|+.|+.+.+.....+|++++.+...
T Consensus 62 ~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 62 TVTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 35556655544 343346778888887554332223333345543 3458889998888888999988777543
No 395
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=36.12 E-value=1.2e+02 Score=29.11 Aligned_cols=60 Identities=8% Similarity=-0.053 Sum_probs=41.9
Q ss_pred cEEEEechhHHHHHHHHHHhcC-CCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCch
Q 042284 75 DIAIAFSGAEDVVLIEYAKLTG-RPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAV 136 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl~l~~~~~-~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~ 136 (430)
+|+=-+|.||-.+.++++..+. +.-.++|+||..-|+. ++++++....--++.+.+|...
T Consensus 64 EiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p--~r~~~l~~~~~d~l~v~~~~~~ 124 (279)
T COG0468 64 EIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDP--ERAKQLGVDLLDNLLVSQPDTG 124 (279)
T ss_pred EEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCH--HHHHHHHHhhhcceeEecCCCH
Confidence 3566688999888888776654 3348999999987765 3456666663336677777764
No 396
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=35.41 E-value=1e+02 Score=31.28 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=37.3
Q ss_pred CcEEEEechhHHHHHH-HHHHhc------CCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLT------GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYT 131 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~------~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~ 131 (430)
.++-|..|||-||.++ .++.+. ....++...-.|.+-.--+.-.+++++.+|...+..
T Consensus 226 ~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGle~SPDL~aarkVAd~igt~Hhe~ 290 (543)
T KOG0571|consen 226 VPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAIGLEDSPDLLAARKVADFIGTIHHEH 290 (543)
T ss_pred CceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEecCCCChhHHHHHHHHHHhCCcceEE
Confidence 3578899999998655 444332 122233444457665555677899999999876543
No 397
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=34.77 E-value=58 Score=28.14 Aligned_cols=20 Identities=15% Similarity=0.449 Sum_probs=16.5
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCC
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
...+ .+++|.++||+++ +|+
T Consensus 133 ~~~~-~~~gi~gTPt~iI--nG~ 152 (178)
T cd03019 133 EKLA-KKYKITGVPAFVV--NGK 152 (178)
T ss_pred HHHH-HHcCCCCCCeEEE--CCE
Confidence 4567 7899999999987 666
No 398
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=34.47 E-value=49 Score=29.14 Aligned_cols=28 Identities=29% Similarity=0.581 Sum_probs=25.0
Q ss_pred EEEEeCCCCHhHHHHHHHHHHHHHHHcC
Q 042284 342 LIVLYAPWCHFCQAMEGSYIELAEQLEG 369 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~la~~~~~ 369 (430)
|.+|+-+.|+.|-...+.++++.+.++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 5678899999999999999999999843
No 399
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=33.97 E-value=10 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=8.0
Q ss_pred ccccchHHHHHHHHHcCCCCccccccC
Q 042284 218 LANVKGQDIWNFLRAMNIPINSLHSQG 244 (430)
Q Consensus 218 i~dWt~~dVw~yi~~~~lp~~pLY~~G 244 (430)
|+.|.+-+|-.+.++.|+||.+|=+.|
T Consensus 23 LFEw~yP~lA~~cr~kg~pYP~Lde~G 49 (57)
T PF12105_consen 23 LFEWGYPVLAKWCRRKGLPYPPLDEDG 49 (57)
T ss_dssp HHHHHHHHH------------------
T ss_pred HHcccCHHHHhhccccccccccccccc
Confidence 588999999999999999999997776
No 400
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=33.00 E-value=1.5e+02 Score=27.30 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=52.8
Q ss_pred EecCCCCCHHHHHHHHHHHHHhCCcEEEEccCchH---------HHHHHHhcCCCCCCccchhhhhhhhchHHHHHHHhc
Q 042284 103 SLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVE---------VQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKG 173 (430)
Q Consensus 103 ~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~~~---------~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~~~~~~ 173 (430)
|+|-|+-.-||..++--+..+|.-+|..++....+ +.+-..++|. ....++||.+.-..++...+.+
T Consensus 82 fVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGn----an~wkycckVFD~LtlaAiID~ 157 (306)
T KOG0373|consen 82 FVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGN----ANVWKYCCKVFDFLTLAAIIDE 157 (306)
T ss_pred ccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCC----chHHHHHHHHHhhhhHHHHhcC
Confidence 67889888899999999999999888776544321 2222344442 2356899999999999888876
Q ss_pred CceEEEe
Q 042284 174 LRAWITG 180 (430)
Q Consensus 174 ~~~~i~G 180 (430)
--..+-|
T Consensus 158 ~vLCVHG 164 (306)
T KOG0373|consen 158 KVLCVHG 164 (306)
T ss_pred cEEEEcC
Confidence 5544433
No 401
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=32.71 E-value=2.3e+02 Score=21.79 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=37.4
Q ss_pred HHHHhcCCCcEE-EEecCCCC-CHHHHHHHHHHHHHh-CCcEEEEccCchHHHHHHHhcCCCC
Q 042284 90 EYAKLTGRPFRV-FSLDTGRL-NPETHQFFDTVEKHY-GIRIEYTFPNAVEVQALVRTKGLFS 149 (430)
Q Consensus 90 ~l~~~~~~~i~v-i~~DTg~~-fpet~~~~~~~~~~~-gl~i~~~~p~~~~~~~~~~~~g~~~ 149 (430)
.++.....++.+ +|+..+.. -|.+.+.++++.+.+ ++++.++.-+ ...+...++|...
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~~e~a~~~~V~~ 65 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LFQDEVEERGIMS 65 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hCHHHHHHcCCcc
Confidence 344455666554 67777765 499999999999988 4666665432 3345556666543
No 402
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=32.09 E-value=4.1e+02 Score=27.16 Aligned_cols=73 Identities=16% Similarity=0.327 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 60 SPLEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 60 ~~~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
...+.++..+..+ +.+-++++|+|..+..+.+.....+.-.|+.. ..+|+.|..++.+...++|++++.+.+.
T Consensus 64 p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~--~~~y~~t~~~~~~~l~~~Gi~v~~vd~~ 137 (433)
T PRK08134 64 PTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVAS--SALYGGSHNLLHYTLRRFGIETTFVKPG 137 (433)
T ss_pred hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEe--CCccHHHHHHHHHHHhhCCeEEEEECCC
Confidence 4466667666654 43357889988887543221113333445544 4468899999888878899998887664
No 403
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=31.96 E-value=3.4e+02 Score=26.78 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=31.8
Q ss_pred EEEcCCCchHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 376 KFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 376 ~Vd~~~~~~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
..|..+. ..+. .-|.+..+|.+.++++-....+....+...+++|++-+++
T Consensus 137 ~~Dtseg-~~~~-~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~ 187 (356)
T KOG1364|consen 137 LDDTSEG-QPFS-AFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNE 187 (356)
T ss_pred eeccCCC-Cchh-hheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHH
Confidence 4555555 6677 7889999999999876443334443334556665554443
No 404
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=31.91 E-value=1.8e+02 Score=25.60 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=38.7
Q ss_pred CCCcEEEEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCC
Q 042284 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADG 381 (430)
Q Consensus 337 ~~k~vlV~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~ 381 (430)
.++.+||-=-|+.|+.-..-...+..|.++|+..++.++..-|..
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 578888888899999988667799999999988789999888864
No 405
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=31.83 E-value=1e+02 Score=27.68 Aligned_cols=76 Identities=11% Similarity=-0.005 Sum_probs=49.1
Q ss_pred HHhccCCCHHHHHHHHHHHc--CCcEEEEec-hhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHH---HHHHHHHHHHhC
Q 042284 53 ARGMESASPLEIMDKAFQKF--GNDIAIAFS-GAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPET---HQFFDTVEKHYG 125 (430)
Q Consensus 53 ~~~l~~~~~~~~i~~~~~~~--~~~i~vs~S-GGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet---~~~~~~~~~~~g 125 (430)
..++......+++.|+...+ +...--.|. +-||.++| .|+....+.+.++.--....|+.. -.|+ +.++.||
T Consensus 19 ~~k~~~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~~~f~qmEnIs~Fi-~a~~~yg 97 (193)
T KOG2046|consen 19 ESKYDDELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVKKINESKMAFVQMENISNFI-KAAKKYG 97 (193)
T ss_pred hcccCHHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCcccccccccccHHHHHHHHHHH-HHHHhcC
Confidence 34455555677888887742 222344565 78999988 788888776555544556677643 2345 7888899
Q ss_pred CcEE
Q 042284 126 IRIE 129 (430)
Q Consensus 126 l~i~ 129 (430)
++-+
T Consensus 98 v~~~ 101 (193)
T KOG2046|consen 98 VPEV 101 (193)
T ss_pred CChh
Confidence 8653
No 406
>PRK07582 cystathionine gamma-lyase; Validated
Probab=31.63 E-value=2.8e+02 Score=27.45 Aligned_cols=70 Identities=9% Similarity=0.028 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 62 LEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 62 ~~~i~~~~~~~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
...++..+..+...-+|.+++|.+...+.+.....+.-.|+..+. .|..+..+.+...+++|++++.+..
T Consensus 53 ~~~Le~~lA~l~~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~--~y~~~~~~~~~~l~~~G~~v~~v~~ 122 (366)
T PRK07582 53 WRALEAALGELEGAEALVFPSGMAAITAVLRALLRPGDTVVVPAD--GYYQVRALAREYLAPLGVTVREAPT 122 (366)
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCC--CcHhHHHHHHHHHhcCeEEEEEECC
Confidence 334444333332223456677776543333333455556666554 4678888888777889998877644
No 407
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=31.38 E-value=1.5e+02 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=27.4
Q ss_pred eecCCCChhhHHHHHHhccCCCHHHHHHHHHHHcC-CcEEEEechh-HHHHHH
Q 042284 39 RIESTNDHEDYEKLARGMESASPLEIMDKAFQKFG-NDIAIAFSGA-EDVVLI 89 (430)
Q Consensus 39 ~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-~~i~vs~SGG-KDS~vl 89 (430)
.++++.++++...+.+.+ ...|+..-++++ .++.++.||| |=+.++
T Consensus 60 ~~~DI~t~~d~~~~~~~I-----~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~ 107 (124)
T TIGR03642 60 KFDDILSDEDILTFMSIA-----AKEVKKERENYGCERIIVNISGGRKIMTII 107 (124)
T ss_pred CccccCCHHHHHHHHHHH-----HHHHHHHhhCCCcceEEEEecCCHHHHHHH
Confidence 366777777766555432 334444444444 2699999988 555443
No 408
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=30.87 E-value=56 Score=30.02 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=17.1
Q ss_pred EEEEechhHHHHH-HHHHHhcCCCcEEE
Q 042284 76 IAIAFSGAEDVVL-IEYAKLTGRPFRVF 102 (430)
Q Consensus 76 i~vs~SGGKDS~v-l~l~~~~~~~i~vi 102 (430)
++-..||||||.- |+-+.+.+..+.++
T Consensus 3 vvaLiSGGKDScynmm~cv~~gHeiVaL 30 (277)
T KOG2316|consen 3 VVALISGGKDSCYNMMCCVRLGHEIVAL 30 (277)
T ss_pred EEEEEeCChHHHHHHHHHHHcCCeeeee
Confidence 5556799999954 34445556655443
No 409
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=30.75 E-value=2.7e+02 Score=22.06 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=31.9
Q ss_pred cEEEEechhHHH-HHH----HHHHhcCCCcEEEEecCCCCC---H---HHHHHHHHHHHHhCCcEEE
Q 042284 75 DIAIAFSGAEDV-VLI----EYAKLTGRPFRVFSLDTGRLN---P---ETHQFFDTVEKHYGIRIEY 130 (430)
Q Consensus 75 ~i~vs~SGGKDS-~vl----~l~~~~~~~i~vi~~DTg~~f---p---et~~~~~~~~~~~gl~i~~ 130 (430)
+|+|++.|.+.| -++ .++...+..+.++|+..+... . +.++...+..+..+++...
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 67 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVT 67 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 377888776655 222 455666778888888776542 1 2233334444555665543
No 410
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=29.86 E-value=4.5e+02 Score=26.60 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=44.3
Q ss_pred HHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 62 LEIMDKAFQK-FGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 62 ~~~i~~~~~~-~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
.+.++..+.+ ++.+-++.+++|.+...+.+.....+.-.|+..+ ..|+.|+.......+.+|++++.+.+
T Consensus 59 ~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 59 TDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSS--YLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred HHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEEC--CCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 3445544444 4444677888888875443322233434555544 45788888888888999998877654
No 411
>PRK06234 methionine gamma-lyase; Provisional
Probab=29.64 E-value=3.3e+02 Score=27.34 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=45.6
Q ss_pred HHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 61 PLEIMDKAFQK-FGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 61 ~~~~i~~~~~~-~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
....+++.+.. ++.+-++.+++|.....+.+.....+.-.|+..+ ..|+.+........+.+|++++.+..
T Consensus 65 ~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~ 136 (400)
T PRK06234 65 TSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASD--TLYGCTFALLNHGLTRYGVEVTFVDT 136 (400)
T ss_pred cHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEec--CccchHHHHHHHHHhhCCeEEEEECC
Confidence 34556665554 3444578889888765443333344444566554 35788888888888889998877654
No 412
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.57 E-value=3.2e+02 Score=27.92 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 61 PLEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 61 ~~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
..+.++..+..+ +.+-++.+++|.....+.+.....+.-.|+..+ ..|+.|+.....+.+++|++++.+..
T Consensus 65 ~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 65 TTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred hHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcc--CchhhHHHHHHHHHHhCCEEEEEECC
Confidence 355666655543 445778889888775543333344444555554 45888999888989999999877754
No 413
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.54 E-value=3.2e+02 Score=27.96 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEc
Q 042284 60 SPLEIMDKAFQK-FGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTF 132 (430)
Q Consensus 60 ~~~~~i~~~~~~-~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~ 132 (430)
...+.++..+.. ++.+-++.|+.|-....+.+.....+.-.|+..+ ..|..|+.++.....++|+++..+.
T Consensus 69 p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~--~~y~~t~~~~~~~l~~~Gi~v~~vd 140 (436)
T PRK07812 69 PTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSP--RLYGGTYNLFHYTLPKLGIEVSFVE 140 (436)
T ss_pred chHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeC--CcchHHHHHHHHHhhcCeEEEEEEC
Confidence 445677777766 4445678888887764433333344444555554 4688999888888888998887663
No 414
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=29.37 E-value=3.4e+02 Score=27.40 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 60 SPLEIMDKAFQK-FGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 60 ~~~~~i~~~~~~-~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
...+.++..+.. .+.+-++.+++|.+...+.+.....+.-.|+..+ ..|+.|+.....+.+++|++++.+...
T Consensus 70 p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~--~~~~~t~~~~~~~~~~~G~~v~~vd~~ 143 (403)
T PRK07810 70 PTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAAR--SLFGSCFVVCNEILPRWGVETVFVDGE 143 (403)
T ss_pred chHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEcc--CCcchHHHHHHHHHHHcCcEEEEECCC
Confidence 335566665554 3444678888888775442222234444555544 367788888888889999998877543
No 415
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=29.19 E-value=93 Score=28.12 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.4
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCC
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
.... ++++|+++||+++ ||+
T Consensus 157 ~~~a-~~~gI~gtPtfiI--nGk 176 (207)
T PRK10954 157 EKAA-ADLQLRGVPAMFV--NGK 176 (207)
T ss_pred HHHH-HHcCCCCCCEEEE--CCE
Confidence 4556 7899999999987 676
No 416
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=28.93 E-value=2.8e+02 Score=25.35 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=38.6
Q ss_pred CCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhC-CCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 349 WCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKL-QLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 349 wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~-~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
.|+.|+.+.-.+. .++..+.+-.||.... ++-. +.. .-...| ++.|+ ++ +..+.+.|.++|+
T Consensus 20 dcpf~qr~~m~L~-----~k~~~f~vttVd~~~k-p~~f-~~~sp~~~~P-~l~~d-~~--------~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LKGVPFKVTTVDLSRK-PEWF-LDISPGGKPP-VLKFD-EK--------WVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHH-----HcCCCceEEEeecCCC-cHHH-HhhCCCCCCC-eEEeC-Cc--------eeccHHHHHHHHH
Confidence 4889998877666 2222578888999888 5544 333 333445 34442 22 1356677777776
Q ss_pred H
Q 042284 428 A 428 (430)
Q Consensus 428 ~ 428 (430)
+
T Consensus 83 e 83 (221)
T KOG1422|consen 83 E 83 (221)
T ss_pred H
Confidence 5
No 417
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=28.77 E-value=2.7e+02 Score=25.22 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=59.0
Q ss_pred EEEechhHHH-------HHHHHHHhc-CCCcEEEEecCCCCC-HHHHHHHHHHHHHh-CCcEEEEccC-chHHHHHHHhc
Q 042284 77 AIAFSGAEDV-------VLIEYAKLT-GRPFRVFSLDTGRLN-PETHQFFDTVEKHY-GIRIEYTFPN-AVEVQALVRTK 145 (430)
Q Consensus 77 ~vs~SGGKDS-------~vl~l~~~~-~~~i~vi~~DTg~~f-pet~~~~~~~~~~~-gl~i~~~~p~-~~~~~~~~~~~ 145 (430)
++..|||.|. .+-.++.+. +....+.|+-|.... ++..+.+.+..+++ |.++..+... .....+.+...
T Consensus 2 l~~igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~a 81 (212)
T cd03146 2 LLLTSGGGLGYLAHALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEA 81 (212)
T ss_pred EEEEeCCcccccccchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcC
Confidence 3567777663 222444444 456789999998764 46566667777788 8887665421 11122333333
Q ss_pred CCCCCCccchhhhhhhhchHHHHHHHhcC---ceEEEee
Q 042284 146 GLFSFYEDGHQECCRIRKVRPLKRALKGL---RAWITGQ 181 (430)
Q Consensus 146 g~~~~~~~~~~~cc~~~K~~pl~~~~~~~---~~~i~G~ 181 (430)
..-.++.-+...+-..+|..++...++.. ...+.|+
T Consensus 82 d~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~ 120 (212)
T cd03146 82 DVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGW 120 (212)
T ss_pred CEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEE
Confidence 22223333455566666666777766632 3566675
No 418
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=28.39 E-value=62 Score=24.53 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=19.3
Q ss_pred CCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHH
Q 042284 395 SFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428 (430)
Q Consensus 395 ~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~ 428 (430)
.-|++++|+...+......-...+.+++.+||.+
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 4589999975443333333235799999999975
No 419
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=28.35 E-value=1e+02 Score=28.04 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=25.3
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHH
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMA 424 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~ 424 (430)
|.+. ++|+|+.+|++++.-... .....| ..+...-.+
T Consensus 152 P~lF-~~F~I~~VPafVv~C~~~--yD~I~G-NIsl~~ALe 188 (212)
T PRK13730 152 PTLF-SQYGIRSVPALVVFCSQG--YDIIRG-NLRVGQALE 188 (212)
T ss_pred HHHH-HhcCCccccEEEEEcCCC--CCEEEe-cccHHHHHH
Confidence 8889 999999999999975432 333334 565554333
No 420
>PRK05939 hypothetical protein; Provisional
Probab=27.92 E-value=4.8e+02 Score=26.24 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 59 ASPLEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 59 ~~~~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
....+.++..+..+ +.+-+|+|+.|.....+.+....++.-.|+..+ ..|+.|..+.+. .+++|++++.+.+.
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~--~~y~~t~~~~~~-l~~~G~~v~~v~~~ 119 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQ--FLFGNTNSLFGT-LRGLGVEVTMVDAT 119 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECC--CccccHHHHHHH-HHhcCCEEEEECCC
Confidence 34566666666554 344678888776543332322244544566544 568888888866 46789988777543
No 421
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=27.83 E-value=2e+02 Score=22.39 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=26.3
Q ss_pred eCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHH
Q 042284 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFA 387 (430)
Q Consensus 346 ya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~ 387 (430)
|.+.+.--++....=+.+...+...++.|-.+|++.+ ++..
T Consensus 5 Y~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d-~~~r 45 (92)
T cd03030 5 YIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN-EENR 45 (92)
T ss_pred EEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC-HHHH
Confidence 3333545566655555665566655799999999877 5443
No 422
>PRK06434 cystathionine gamma-lyase; Validated
Probab=27.75 E-value=4e+02 Score=26.73 Aligned_cols=75 Identities=20% Similarity=0.384 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccCc
Q 042284 59 ASPLEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNA 135 (430)
Q Consensus 59 ~~~~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~~ 135 (430)
....+.++..+..+ +.+.+|+|+.|..+..+.+.....+.-.|+.. ...|..|+.+......++|++++.+..+.
T Consensus 63 ~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all~~GD~Vl~~--~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~ 138 (384)
T PRK06434 63 NPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKKGKRILSI--SDLYGQTFYFFNKVLKTLGIHVDYIDTDR 138 (384)
T ss_pred ChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEe--cCccchHHHHHHHHHHhcCcEEEEECCCC
Confidence 34456666666654 44578899888765433222223444445543 45788899999899999999988776543
No 423
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=27.24 E-value=29 Score=33.70 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=23.2
Q ss_pred CCC-ccccccCCcccCCcCCCCCCCCCCccccCC
Q 042284 235 IPI-NSLHSQGYISIGCEPCTRPVLPGQHEREGR 267 (430)
Q Consensus 235 lp~-~pLY~~Gy~siGC~~Ct~~~~~~~~~r~gr 267 (430)
+|. .+++-.-|.+.||.+|.+|.-..+-++.||
T Consensus 274 ip~~~ev~p~pf~t~gC~~cnRP~~n~~~e~p~r 307 (339)
T COG2516 274 IPKVMEVPPSPFRTRGCPGCNRPYPNFMFELPGR 307 (339)
T ss_pred cccccCCCccccccCCCCCCCCCCcchHhhccCC
Confidence 555 556656799999999999864323366666
No 424
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.09 E-value=5.5e+02 Score=26.07 Aligned_cols=72 Identities=8% Similarity=0.151 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHcC-CcEEEEechhH-HHHHH--HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 59 ASPLEIMDKAFQKFG-NDIAIAFSGAE-DVVLI--EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 59 ~~~~~~i~~~~~~~~-~~i~vs~SGGK-DS~vl--~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
.....+++..+.... ..-+++||-|. -..++ +|+ .....++-. +..|-.|..+++++..++|+....+.+.
T Consensus 76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~---~~g~~iV~~--~~~Y~gT~~~l~~~~~~~gie~~~vd~~ 150 (409)
T KOG0053|consen 76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLL---PAGDHIVAT--GDVYGGTLRILRKFLPKFGGEGDFVDVD 150 (409)
T ss_pred CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhc---CCCCcEEEe--CCCcccHHHHHHHHHHHhCceeeeechh
Confidence 455667776666543 33467777555 33333 333 222333333 3678899999999999999888776554
Q ss_pred c
Q 042284 135 A 135 (430)
Q Consensus 135 ~ 135 (430)
.
T Consensus 151 ~ 151 (409)
T KOG0053|consen 151 D 151 (409)
T ss_pred h
Confidence 3
No 425
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=26.20 E-value=4.8e+02 Score=26.09 Aligned_cols=68 Identities=10% Similarity=0.148 Sum_probs=41.6
Q ss_pred HHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 042284 62 LEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYT 131 (430)
Q Consensus 62 ~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~ 131 (430)
.+.++..+..+ +..-++.++||.....+.+.....+.-.|+..+. .|+.++.+...+....++++..+
T Consensus 54 ~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~--~y~~~~~~~~~~~~~~gi~v~~v 122 (386)
T PRK08045 54 RDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHD--CYGGSYRLFDSLAKRGCYRVLFV 122 (386)
T ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCC--CcHHHHHHHHHHHhhCCeEEEEe
Confidence 44455444443 3335677888866533333333445556666654 58899999888888877776655
No 426
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=26.15 E-value=86 Score=30.40 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=34.3
Q ss_pred cEEEEechhHHHHHH-HHHHhcC----------------CCc-EEEEecCCCC-----CHHHHHHHHHHHHHhCCcEEEE
Q 042284 75 DIAIAFSGAEDVVLI-EYAKLTG----------------RPF-RVFSLDTGRL-----NPETHQFFDTVEKHYGIRIEYT 131 (430)
Q Consensus 75 ~i~vs~SGGKDS~vl-~l~~~~~----------------~~i-~vi~~DTg~~-----fpet~~~~~~~~~~~gl~i~~~ 131 (430)
-++|+|| |.++|| .|+.+.. ..| .++|+|-|.. ++-....++.+++. ++.+++.
T Consensus 195 ~~LiGFS--KGcvVLNqll~El~~~~~~~~~~~~~~~~l~~I~~~~wLD~Gh~g~~~~w~T~~~~L~~l~~~-~i~i~vH 271 (303)
T PF10561_consen 195 LTLIGFS--KGCVVLNQLLYELHYLEELARVDKEIERFLSRISDMYWLDGGHNGGSNTWITDENVLKELAKL-GIRIHVH 271 (303)
T ss_pred eEEEEec--CcchHHHHHHHHHHhhhcccCCchHHHHHHHhhheEEEeccCCCCCCCceecCHHHHHHHHhc-CcEEEEe
Confidence 3788999 557887 6665542 113 4789999865 44445555566554 8877653
No 427
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=25.69 E-value=87 Score=25.50 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=16.3
Q ss_pred EEEEeCCCCHhHHHHHHHHHH
Q 042284 342 LIVLYAPWCHFCQAMEGSYIE 362 (430)
Q Consensus 342 lV~Fya~wC~~C~~~~p~~~~ 362 (430)
+..|+.|.|..|++....+++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 346889999999988766544
No 428
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=25.69 E-value=1.6e+02 Score=27.65 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHc--CC---cEEEEechhHHHHHHHHHHhc-------CCCcEEEEecCCCCCHHHHHHHHHHHHHhCC
Q 042284 60 SPLEIMDKAFQKF--GN---DIAIAFSGAEDVVLIEYAKLT-------GRPFRVFSLDTGRLNPETHQFFDTVEKHYGI 126 (430)
Q Consensus 60 ~~~~~i~~~~~~~--~~---~i~vs~SGGKDS~vl~l~~~~-------~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl 126 (430)
+..+-|+.++.-. .+ +|+=..+-||--..|+|+..+ +.+-.|+|+||...|+- +-+.++.+++++
T Consensus 22 Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~--~Rl~~i~~~~~~ 98 (256)
T PF08423_consen 22 TGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP--ERLQQIAERFGL 98 (256)
T ss_dssp -SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H--HHHHHHHHHTTS
T ss_pred CCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH--HHHHHHhhcccc
Confidence 3345566665210 01 344334478988888776553 35678999999999874 334556677765
No 429
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=25.68 E-value=2.1e+02 Score=24.74 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=35.2
Q ss_pred CcEEEEechhHHHHHH-HHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHH---HhCCcEEE
Q 042284 74 NDIAIAFSGAEDVVLI-EYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEK---HYGIRIEY 130 (430)
Q Consensus 74 ~~i~vs~SGGKDS~vl-~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~---~~gl~i~~ 130 (430)
..++|+.|-|+-..-+ .++. -..++.++.-.+|.+-+.|.++=+++.+ +.|.++..
T Consensus 29 k~~vVAS~tG~tA~k~lemve-g~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~ 88 (186)
T COG1751 29 KHIVVASSTGYTALKALEMVE-GDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT 88 (186)
T ss_pred ceEEEEecccHHHHHHHHhcc-cCceEEEEEeecccccCCceecCHHHHHHHHHcCceeee
Confidence 5699999988765433 3333 2356777888888876666655444444 44766644
No 430
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=24.82 E-value=1.3e+02 Score=27.40 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHH-HHH-HHHHhc------CCCcEEEEecCC--CC--CHH--HHHHHHHHHHHhCCc
Q 042284 62 LEIMDKAFQKFGNDIAIAFSGAEDV-VLI-EYAKLT------GRPFRVFSLDTG--RL--NPE--THQFFDTVEKHYGIR 127 (430)
Q Consensus 62 ~~~i~~~~~~~~~~i~vs~SGGKDS-~vl-~l~~~~------~~~i~vi~~DTg--~~--fpe--t~~~~~~~~~~~gl~ 127 (430)
-+.|...++.-+ ...|++|||..- .++ .|.... ..++.++.+|.. .. -++ .....+.+.++++.+
T Consensus 8 a~~l~~~i~~~~-~~~i~lsgG~T~~~~~~~l~~~~~~~~~~~~~v~v~~~der~~v~~~~~~sn~~~~~~~l~~~~~~~ 86 (232)
T cd01399 8 AELIAELIREKP-PAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMRENLFDHIDIK 86 (232)
T ss_pred HHHHHHHHHhCC-CcEEEEcCCCCHHHHHHHHHHHHHhcCCcHHHeEEEeCceecCCCCCcchhHHHHHHHHhhccCCCC
Confidence 345556666644 478999999763 333 444432 356889999954 32 222 222345666666655
No 431
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=24.81 E-value=92 Score=22.16 Aligned_cols=53 Identities=11% Similarity=-0.039 Sum_probs=31.7
Q ss_pred EEEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCC---chHHHHHhCCCCCCCEEEE
Q 042284 343 IVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD---HKEFAKQKLQLVSFPTILF 401 (430)
Q Consensus 343 V~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~---~~~l~~~~~~V~~~Ptl~~ 401 (430)
..|+.+.|+.|+...-.++...- .+....+|.... .+++. +......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~-----~~~~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI-----PYEWVEVDILKGETRTPEFL-ALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-----CcEEEEecCCCcccCCHHHH-HhCCCCCCCEEEE
Confidence 35788999999987765554421 345555654321 13444 4444568999863
No 432
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=24.56 E-value=2.2e+02 Score=25.90 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=36.3
Q ss_pred ecCCCChhhHHHHHHhccCCCHHHHHHHHHHHcCCcEEEEechh-HHHHHH-HHHH-hc-CC--CcEEEEecCCCC
Q 042284 40 IESTNDHEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGA-EDVVLI-EYAK-LT-GR--PFRVFSLDTGRL 109 (430)
Q Consensus 40 ~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~i~vs~SGG-KDS~vl-~l~~-~~-~~--~i~vi~~DTg~~ 109 (430)
+++++++++.+.+.+-+ ...++.....-+..+-+|.||| |=+..+ -++. .. ++ .+..++++.++|
T Consensus 90 l~Dirt~~dn~~aa~~I-----~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~gr~qDrL~HVLV~e~fE 160 (209)
T TIGR02584 90 LADIRTPADNEAAANFI-----VQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLFGREQDRLSHVLVSEPFE 160 (209)
T ss_pred ccccCCHHHHHHHHHHH-----HHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHhCCccceEEEEecCchhc
Confidence 67777877777655443 3445555433445689999988 554333 2222 22 22 355566665544
No 433
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=24.34 E-value=5.5e+02 Score=25.49 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=42.8
Q ss_pred HHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 61 PLEIMDKAFQK-FGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 61 ~~~~i~~~~~~-~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
..+.++..+.. ++.+-++.+++|..+..+.+.....+.-.|+..+ ..|+.|+.+...+.+++|++++.+..
T Consensus 55 ~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~--~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 55 TVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQAGDHVVASR--SLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred hHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEec--CCcchHHHHHHHHHHHhCCEEEEECC
Confidence 34555555544 3433456788887765442222233333455433 46788888888888999998876643
No 434
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=23.84 E-value=2.2e+02 Score=23.67 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=32.7
Q ss_pred HHHcCCCeEEEEEEcCCCc------h---HHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHH
Q 042284 365 EQLEGMGVKVGKFRADGDH------K---EFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427 (430)
Q Consensus 365 ~~~~~~~v~~~~Vd~~~~~------~---~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~ 427 (430)
+.++++.+.+.+.|...+. + ++. ++-+...+|-+++ +|+ .+.. |..-+.++|.+|+.
T Consensus 34 ~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L-~~~G~e~LPitlV--dGe--iv~~-G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 34 DWLKEQGVEVERYNLAQNPQAFVENPEVNQLL-QTEGAEALPITLV--DGE--IVKT-GRYPTNEELAEWLG 99 (123)
T ss_dssp HHHHHTT-EEEEEETTT-TTHHHHSHHHHHHH-HHH-GGG-SEEEE--TTE--EEEE-SS---HHHHHHHHT
T ss_pred HHHHhCCceEEEEccccCHHHHHhCHHHHHHH-HHcCcccCCEEEE--CCE--EEEe-cCCCCHHHHHHHhC
Confidence 3344457999999998771 1 223 3457889997654 777 4444 44678999999874
No 435
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.78 E-value=1.1e+02 Score=28.32 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=27.7
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCCcceeecCCCCCCHHHHHHHHHHh
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~~~~~~~~gg~~~~~~l~~~i~~~ 429 (430)
..+. ++++|.++||+++- |+ .+.| ..+.++|.+.|...
T Consensus 205 ~~~a-~~~gv~gTPt~~v~--~~----~~~g-~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLA-QQLGVNGTPTFIVN--GK----LVPG-LPDLDELKAIIDEA 242 (244)
T ss_pred HHHH-HhcCCCcCCeEEEC--Ce----eecC-CCCHHHHHHHHHHh
Confidence 4566 78999999998774 32 3444 56789999888764
No 436
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=23.31 E-value=54 Score=30.45 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=26.0
Q ss_pred cccccchHHHHHHHHHcCCCCccccccCC
Q 042284 217 PLANVKGQDIWNFLRAMNIPINSLHSQGY 245 (430)
Q Consensus 217 Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy 245 (430)
=++.|.+.++-.|.++.|+||.+|=+.|-
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~yp~~~~~g~ 214 (229)
T PRK11081 186 LLFEGGYPVLAKVAKRKGLPYPHIDEQGQ 214 (229)
T ss_pred HHHhhcCHHHHHHHHHcCCCCCCcCCCCC
Confidence 36889999999999999999999988873
No 437
>PRK05968 hypothetical protein; Provisional
Probab=22.81 E-value=6.8e+02 Score=24.96 Aligned_cols=71 Identities=15% Similarity=0.361 Sum_probs=44.0
Q ss_pred HHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 62 LEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 62 ~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
.+.+++.+..+ +.+-++.|++|.....+.+.....+.-.|+..+ ..|+.|+.+.+.....+|++++.+...
T Consensus 65 ~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~ 136 (389)
T PRK05968 65 VRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGR 136 (389)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCC
Confidence 45555555543 433556777776443322222334444566554 478999999988899999998877543
No 438
>PRK07049 methionine gamma-lyase; Validated
Probab=22.01 E-value=5.6e+02 Score=26.08 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=42.3
Q ss_pred HHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEE
Q 042284 62 LEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYT 131 (430)
Q Consensus 62 ~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~ 131 (430)
.+.++..+..+ +..-++.++||.+...+.+.....+.-.|+..+ .-|+.+..++..+.+.+|++++.+
T Consensus 85 ~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~--p~Y~~~~~~~~~~l~~~Gi~~v~~ 153 (427)
T PRK07049 85 SEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQ--PLYGGTETLLAKTFRNFGVGAVGF 153 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcC--CCcccHHHHHHHHHHhcCcEEEEE
Confidence 45556555543 333467788888864433333344444455444 458888888888888999986544
No 439
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=21.90 E-value=1.2e+02 Score=24.25 Aligned_cols=57 Identities=11% Similarity=0.196 Sum_probs=33.9
Q ss_pred EeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCC--CCCEEEEE-eCCC
Q 042284 345 LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLV--SFPTILFF-PKHS 406 (430)
Q Consensus 345 Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~--~~Ptl~~~-~~g~ 406 (430)
||-..|+.|......+.+.. -.+ .+.|+.+.-... .++. +.+++. ..-+.++. .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d--~~~-~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD--RGG-RLRFVDIQSEPD-QALL-ASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC--CCC-CEEEEECCChhh-hhHH-HhcCcCHHHHcCeeEEecCCC
Confidence 78899999999998777761 112 466655522222 3444 455654 34544443 5555
No 440
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=21.63 E-value=2.4e+02 Score=22.72 Aligned_cols=63 Identities=19% Similarity=0.361 Sum_probs=37.0
Q ss_pred HHHHcCC--cEEEEe-c-hh-HHHHHHHHHHh-cCCCcEEEEecCCCCC-------HHHHHHHHHHHHHhCCcEEE
Q 042284 68 AFQKFGN--DIAIAF-S-GA-EDVVLIEYAKL-TGRPFRVFSLDTGRLN-------PETHQFFDTVEKHYGIRIEY 130 (430)
Q Consensus 68 ~~~~~~~--~i~vs~-S-GG-KDS~vl~l~~~-~~~~i~vi~~DTg~~f-------pet~~~~~~~~~~~gl~i~~ 130 (430)
+++.|++ --+|+| + || -+.-+++++.+ ....+.+||+=|-... |.-.++.+.+.+++|++++.
T Consensus 29 ~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 29 AFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred ccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 3566663 346677 3 66 22223322222 2445667777665333 77777888888888998754
No 441
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=21.44 E-value=6e+02 Score=25.34 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=42.1
Q ss_pred HHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEcc
Q 042284 62 LEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFP 133 (430)
Q Consensus 62 ~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p 133 (430)
.+.++..+.++ +.+-.+.+++|.....+.+.....+.-.|+..+ ..|+.|+..+..+.+++|+++..+..
T Consensus 63 ~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~gi~~~~~d~ 133 (388)
T PRK07811 63 RTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPN--DAYGGTFRLIDKVFTRWGVEYTPVDL 133 (388)
T ss_pred HHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEcC--CCchHHHHHHHHhCcCCCeEEEEeCC
Confidence 55566655553 444667788775443222222234444555543 56888988888877888988766543
No 442
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.38 E-value=89 Score=31.38 Aligned_cols=57 Identities=26% Similarity=0.552 Sum_probs=41.1
Q ss_pred CCeEEEecccccchHHHHHHHHHcCCCCccccccCCcccCCcCCCCCCCCCCccccCCCc
Q 042284 210 GSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWW 269 (430)
Q Consensus 210 ~~~~~~~Pi~dWt~~dVw~yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~grw~ 269 (430)
..++.+-|+-.-- +--|.+++....+.--.|.+--++-||.+|-.++.-.. -.-|||
T Consensus 224 ~KyWYfgplk~~a-A~f~s~lk~wpak~e~vv~y~~~cpgce~c~~~vqr~s--~~~r~~ 280 (535)
T KOG4435|consen 224 KKYWYFGPLKRRA-AYFWSMLKRWPAKIECVVEYPTECPGCEPCETPVQRPS--LYRRWW 280 (535)
T ss_pred hheeeecHHHHHH-HHHHHHHhcCCCceeEEeccCCCCCCCCcCCCCccCcc--cccchh
Confidence 3578888985432 78889999988888777766668899999988776322 233665
No 443
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=21.20 E-value=8.3e+02 Score=24.38 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEccC
Q 042284 60 SPLEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134 (430)
Q Consensus 60 ~~~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~p~ 134 (430)
...+.++..+.++ +.+-++.+++|.....+.+.....+.-.|+..+ ..|+.|..........+|..+..+...
T Consensus 59 p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~--~~y~~t~~~~~~~~~~~G~~~~~vd~~ 132 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDE--CLYGCTFALLEHALTKFGIQVDFINMA 132 (391)
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEec--CcchHHHHHHHHHHhcCCeEEEEECCC
Confidence 3345566655553 444578888887654433322234444555544 357888888888888999888766554
No 444
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=21.19 E-value=4.6e+02 Score=25.52 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcC-CcEEEEec-hhHHHHHHHHHHhcCCCcEEEEecCCCCC----HHHHHHHHHHHHHhCCc
Q 042284 61 PLEIMDKAFQKFG-NDIAIAFS-GAEDVVLIEYAKLTGRPFRVFSLDTGRLN----PETHQFFDTVEKHYGIR 127 (430)
Q Consensus 61 ~~~~i~~~~~~~~-~~i~vs~S-GGKDS~vl~l~~~~~~~i~vi~~DTg~~f----pet~~~~~~~~~~~gl~ 127 (430)
++|+..|+-+... +.++|+.+ ||.-.-+++=....+++++||-+|....- +..+..++..++.+++.
T Consensus 168 a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~ 240 (323)
T COG2515 168 ALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLG 240 (323)
T ss_pred HHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4677777654233 44666665 55444444444456688999988887654 45566666777778875
No 445
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=21.07 E-value=81 Score=27.70 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=18.3
Q ss_pred hHHHHHhCCCCCCCEEEEEeCCC
Q 042284 384 KEFAKQKLQLVSFPTILFFPKHS 406 (430)
Q Consensus 384 ~~l~~~~~~V~~~Ptl~~~~~g~ 406 (430)
...+ .+++|.++||+++...+.
T Consensus 159 ~~~a-~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLA-RELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHH-HHcCCCccCEEEEEeCCe
Confidence 4566 789999999999997765
No 446
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.01 E-value=2.1e+02 Score=20.42 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=31.0
Q ss_pred EEeCCCCHhHHHHHHHHHHHHHHHcCCCeEEEEEEcCCCchHHHHHhCCCCCCCEEEE
Q 042284 344 VLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401 (430)
Q Consensus 344 ~Fya~wC~~C~~~~p~~~~la~~~~~~~v~~~~Vd~~~~~~~l~~~~~~V~~~Ptl~~ 401 (430)
.|+.+.|+.|.+..-.+.... .+-.+....+|.....+++. +......+|++..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~---~~i~~~~~~~~~~~~~~~~~-~~~p~~~vP~l~~ 56 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG---LGDDVELVLVNPWSDDESLL-AVNPLGKIPALVL 56 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC---CCCCcEEEEcCcccCChHHH-HhCCCCCCCEEEE
Confidence 567888999998765444310 11134555565433324555 4555678897753
No 447
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser
Probab=20.96 E-value=2e+02 Score=24.16 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHhcCCC-cEEEEecCC
Q 042284 60 SPLEIMDKAFQKFGNDIAIAFSGAEDVVLI-EYAKLTGRP-FRVFSLDTG 107 (430)
Q Consensus 60 ~~~~~i~~~~~~~~~~i~vs~SGGKDS~vl-~l~~~~~~~-i~vi~~DTg 107 (430)
...+.++++.+-.++.++|+++..-|...| ..+.+.+.+ .+.-++||-
T Consensus 63 ~~~~v~~~l~~~l~~~~lv~hn~~fD~~~l~~~~~~~g~~~~~~~~idt~ 112 (156)
T cd06130 63 TFPEVWPEIKPFLGGSLVVAHNASFDRSVLRAALEAYGLPPPPYQYLCTV 112 (156)
T ss_pred CHHHHHHHHHHHhCCCEEEEeChHHhHHHHHHHHHHcCCCCCCCCEEEHH
Confidence 345666666666676799999999998887 555555432 223345553
No 448
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=20.53 E-value=6.7e+02 Score=25.01 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=42.0
Q ss_pred HHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEc
Q 042284 62 LEIMDKAFQKF-GNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTF 132 (430)
Q Consensus 62 ~~~i~~~~~~~-~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~ 132 (430)
.+.++.++..+ +..-++.++||.....+.+..-..+.-.|+..+ ..|+.++.++..+....++++..+.
T Consensus 53 ~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~--p~y~~~~~~~~~~~~~~~~~v~~~d 122 (382)
T TIGR02080 53 RDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPH--DCYGGTYRLLNALAKKGCFRVLFVD 122 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcC--CCcHHHHHHHHHHHhhcCeEEEEEC
Confidence 45555555443 333567888887764432222244444555544 3578899998888877777776553
No 449
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=20.45 E-value=1.9e+02 Score=24.80 Aligned_cols=46 Identities=13% Similarity=0.027 Sum_probs=25.3
Q ss_pred EEEEechhHH------HHHHHHHHhcC---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 042284 76 IAIAFSGAED------VVLIEYAKLTG---RPFRVFSLDTGRLNPETHQFFDTVEK 122 (430)
Q Consensus 76 i~vs~SGGKD------S~vl~l~~~~~---~~i~vi~~DTg~~fpet~~~~~~~~~ 122 (430)
..|+||||.= ..++.++.++. ++. -|++-||+.+.|-....+++.+
T Consensus 67 ~gvt~sGGEPl~~~~~~~l~~l~~~~k~~~~~~-~i~~~tGy~~eel~~~~~~~l~ 121 (154)
T PRK11121 67 QGLSLSGGDPLHPQNVPDILKLVQRVKAECPGK-DIWVWTGYKLDELNAAQRQVVD 121 (154)
T ss_pred CcEEEECCCccchhhHHHHHHHHHHHHHHCCCC-CEEEecCCCHHHHHHHHHHHHh
Confidence 4689999962 22334444332 222 2345699999876544334444
No 450
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=20.04 E-value=4.2e+02 Score=20.45 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=22.4
Q ss_pred cEEEEechhHHH-HHH----HHHHhcCCCcEEEEecCCCC
Q 042284 75 DIAIAFSGAEDV-VLI----EYAKLTGRPFRVFSLDTGRL 109 (430)
Q Consensus 75 ~i~vs~SGGKDS-~vl----~l~~~~~~~i~vi~~DTg~~ 109 (430)
+++|+++++..+ .++ .++...+.++.++++.....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~ 40 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPP 40 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCC
Confidence 367888866554 333 34555567788888876654
No 451
>PRK06767 methionine gamma-lyase; Provisional
Probab=20.01 E-value=8.7e+02 Score=24.13 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=42.0
Q ss_pred HHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHHHhCCcEEEEc
Q 042284 62 LEIMDKAFQK-FGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTF 132 (430)
Q Consensus 62 ~~~i~~~~~~-~~~~i~vs~SGGKDS~vl~l~~~~~~~i~vi~~DTg~~fpet~~~~~~~~~~~gl~i~~~~ 132 (430)
.+.++..+.+ ++.+-++.+++|.....+.+.....+.-.|+..+ ..|+.++.+++.+..++|+++....
T Consensus 63 ~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~--~~y~~~~~~~~~~~~~~gi~~~~~~ 132 (386)
T PRK06767 63 VKLFEERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIICSN--GLYGCTYGFLEVLEEKFMITHSFCD 132 (386)
T ss_pred hHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcC--CcHHHHHHHHHHHHhhcCeEEEEeC
Confidence 4555555544 4444567788777653332222234444555433 3688899999988888998776553
Done!