RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 042284
(430 letters)
>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase.
Length = 457
Score = 776 bits (2006), Expect = 0.0
Identities = 297/384 (77%), Positives = 339/384 (88%), Gaps = 10/384 (2%)
Query: 47 EDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDT 106
ED+EKLA+ +E+ASPLEIMDKA +KFGNDIAIAFSGAEDV LIEYA LTGRPFRVFSLDT
Sbjct: 84 EDFEKLAKELENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDT 143
Query: 107 GRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRP 166
GRLNPET++ FD VEKHYGIRIEY FP+AVEVQALVR KGLFSFYEDGHQECCR+RKVRP
Sbjct: 144 GRLNPETYRLFDAVEKHYGIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRP 203
Query: 167 LKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDI 226
L+RALKGLRAWITGQRKDQSPGTRAE+PVVQ+D FEG+DGG GSLVKWNPLANV G ++
Sbjct: 204 LRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFEGLDGGPGSLVKWNPLANVTGNEV 263
Query: 227 WNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHNGNIK 286
WNFLR M++P+NSLH+QGY+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH GNIK
Sbjct: 264 WNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIK 323
Query: 287 QEELSQHININGNGVAQHTNGSAPASDLFNSQKLVSFRRTGIENLARLQNREDPWLIVLY 346
+E+ A + NG+A +D+FNSQ +V+ R GIENL +L+NR++PWL+VLY
Sbjct: 324 EED----------NGAANDNGNAAVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLY 373
Query: 347 APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHS 406
APWC FCQAME SY ELAE+L G GVKV KFRADGD KEFAKQ+LQL SFPTIL FPK+S
Sbjct: 374 APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNS 433
Query: 407 AKPVKYPSEKRDVDSLMAFVNALR 430
++P+KYPSEKRDVDSL++FVN+LR
Sbjct: 434 SRPIKYPSEKRDVDSLLSFVNSLR 457
>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase,
thioredoxin-independent. This enzyme, involved in the
assimilation of inorganic sulfate, is closely related to
the thioredoxin-dependent PAPS reductase of Bacteria
(CysH) and Saccharomyces cerevisiae. However, it has its
own C-terminal thioredoxin-like domain and is not
thioredoxin-dependent. Also, it has a substrate
preference for 5'-adenylylsulfate (APS) over
3'-phosphoadenylylsulfate (PAPS) so the pathway does not
require an APS kinase (CysC) to convert APS to PAPS.
Arabidopsis thaliana appears to have three isozymes, all
able to complement E. coli CysH mutants (even in
backgrounds lacking thioredoxin or APS kinase) but
likely localized to different compartments in
Arabidopsis [Central intermediary metabolism, Sulfur
metabolism].
Length = 463
Score = 697 bits (1799), Expect = 0.0
Identities = 297/390 (76%), Positives = 342/390 (87%), Gaps = 9/390 (2%)
Query: 41 ESTNDHEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAKLTGRPFR 100
E + ED+EKLA+ +E+ASPLEIMDKA +KFGNDIAIAFSGAEDV LIEYA LTGRPFR
Sbjct: 83 EKVVEVEDFEKLAKKLENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFR 142
Query: 101 VFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCR 160
VFSLDTGRLNPET++FFD VEK YGIRIEY FP+AVEVQALVR+KGLFSFYEDGHQECCR
Sbjct: 143 VFSLDTGRLNPETYRFFDAVEKQYGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCR 202
Query: 161 IRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLAN 220
+RKVRPL+RALKGL+AWITGQRKDQSPGTR+EIPVVQ+D FEG+DGG GSLVKWNP+AN
Sbjct: 203 VRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVAN 262
Query: 221 VKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGL 280
V+G+D+WNFLR M++P+N+LH+QGY+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGL
Sbjct: 263 VEGKDVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGL 322
Query: 281 HNGNIKQEELSQHININGNGVAQHTNGSAPASDLFNSQKLVSFRRTGIENLARLQNREDP 340
H GNIK+E +G A + NGS +D+F+S +VS R GIENL +L+ R++
Sbjct: 323 HKGNIKEE--------TLDG-AVNGNGSDAVADIFDSNNVVSLSRPGIENLLKLEERKEA 373
Query: 341 WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400
WL+VLYAPWC FCQAME SY+ELAE+L G GVKV KFRADGD KEFAKQ+LQL SFPTIL
Sbjct: 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTIL 433
Query: 401 FFPKHSAKPVKYPSEKRDVDSLMAFVNALR 430
FFPKHS++P+KYPSEKRDVDSLM+FVN LR
Sbjct: 434 FFPKHSSRPIKYPSEKRDVDSLMSFVNLLR 463
>gnl|CDD|234997 PRK02090, PRK02090, phosphoadenosine phosphosulfate reductase;
Provisional.
Length = 241
Score = 281 bits (722), Expect = 1e-93
Identities = 105/242 (43%), Positives = 138/242 (57%), Gaps = 14/242 (5%)
Query: 46 HEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFS-GAEDVVLIEYAKLTGRPFRVFSL 104
D +L +E AS E + A + FG +A+ S GAED VL+ V L
Sbjct: 13 ALDLAELNAELEGASAQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFL 72
Query: 105 DTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKV 164
DTG L PET++F D + + + ++ P+A + R GL+ + ECCRIRKV
Sbjct: 73 DTGYLFPETYRFIDELTERLLLNLKVYRPDASAAEQEARYGGLWEQSVEDRDECCRIRKV 132
Query: 165 RPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQ 224
PL RAL GL AWITG R++QS TRA +PV++ID G K NPLA+ +
Sbjct: 133 EPLNRALAGLDAWITGLRREQSG-TRANLPVLEID----------GGRFKINPLADWTNE 181
Query: 225 DIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHNGN 284
D+W +L+ ++P + L QGY SIGCEPCTRPV PG+ ER GR WW K KECGLH GN
Sbjct: 182 DVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGR-WWGGLK-KECGLHEGN 239
Query: 285 IK 286
+
Sbjct: 240 LP 241
>gnl|CDD|233701 TIGR02055, APS_reductase, thioredoxin-dependent adenylylsulfate APS
reductase. This model describes recently identified
adenosine 5'-phosphosulfate (APS) reductase activity
found in sulfate-assimilatory prokaryotes, thus
separating it from the traditionally described
phosphoadenosine 5'-phosphosulfate (PAPS) reductases
found in bacteria and fungi. Homologous to PAPS
reductase in enterobacteria, cyanobacteria, and yeast,
APS reductase here clusters with, and demonstrates
greater homology to plant APS reductase. Additionally,
the presence of two conserved C-terminal motifs
(CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate
specificity and serves as a FeS cluster [Central
intermediary metabolism, Sulfur metabolism].
Length = 191
Score = 261 bits (669), Expect = 1e-86
Identities = 101/200 (50%), Positives = 125/200 (62%), Gaps = 9/200 (4%)
Query: 81 SGAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQA 140
GAEDVVL++ A +VF LDTGRL ET++ D V + Y I I+ P + V+
Sbjct: 1 LGAEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEE 60
Query: 141 LVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDT 200
V+ GL FY ECC IRKV PLKRAL G+ AWITG R+DQSP TRA+ P ++ID
Sbjct: 61 QVKEYGLNLFYRSVPHECCGIRKVEPLKRALAGVSAWITGLRRDQSP-TRAQAPFLEID- 118
Query: 201 SFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPG 260
LVK NPLA+ +D+W ++ +P N LH +GY SIGCEPCTRPV PG
Sbjct: 119 -------EAFGLVKINPLADWTSEDVWEYIADNELPYNPLHDRGYPSIGCEPCTRPVAPG 171
Query: 261 QHEREGRWWWEDAKAKECGL 280
+ R GRWWWE+A KECGL
Sbjct: 172 EDPRAGRWWWEEAAKKECGL 191
>gnl|CDD|223253 COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate
sulfotransferase (PAPS reductase)/FAD synthetase and
related enzymes [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 261
Score = 221 bits (564), Expect = 9e-70
Identities = 101/259 (38%), Positives = 139/259 (53%), Gaps = 14/259 (5%)
Query: 37 EGRIESTNDHEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFS-GAEDVVLIEYAKLT 95
G E+ L +E+ SP+EI+ A ++F N + ++FS G + VL+ A
Sbjct: 3 TGSPTKDRMSENLASLLDKLEAESPIEILRWAAEEFSNPVVVSFSGGKDSTVLLHLAAKA 62
Query: 96 GRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGH 155
F V LDTG PET++F D + + YG+ ++ + EV A G +
Sbjct: 63 FPDFPVIFLDTGYHFPETYEFRDRLAEEYGLDLK-VYRPDDEV-AEGEKYGGKLWEPSVE 120
Query: 156 QECCRIRKVRPLKRALKGL--RAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLV 213
+ CC IRKV PLKRAL AW TG R+D+SP TRA++PVV D+ F +
Sbjct: 121 RWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESP-TRAKLPVVSFDSEFGES-------I 172
Query: 214 KWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLP-GQHEREGRWWWED 272
+ NPLA+ D+W ++ A N+P N L+ QGY SIGC PCTRPV P + ER GRW E
Sbjct: 173 RVNPLADWTELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGEL 232
Query: 273 AKAKECGLHNGNIKQEELS 291
A+ ECGLH + LS
Sbjct: 233 AEKTECGLHRADDPDSALS 251
>gnl|CDD|201832 pfam01507, PAPS_reduct, Phosphoadenosine phosphosulfate reductase
family. This domain is found in phosphoadenosine
phosphosulfate (PAPS) reductase enzymes or PAPS
sulfotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP). It is also
found in NodP nodulation protein P from Rhizobium which
has ATP sulfurylase activity (sulfate adenylate
transferase).
Length = 173
Score = 196 bits (500), Expect = 2e-61
Identities = 73/184 (39%), Positives = 104/184 (56%), Gaps = 15/184 (8%)
Query: 76 IAIAFS-GAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPN 134
+ ++FS G + +VL+ A P V +DTG PET++F D +E+ YG+ ++ P
Sbjct: 2 LVVSFSGGKDSLVLLHLASKAFPPGPVIFIDTGYEFPETYEFVDELEEKYGLNLKVYLPE 61
Query: 135 AVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAE 192
+ + S Y + CCR+RKV PLKRALK G AW TG R+D+SP +RA+
Sbjct: 62 DSFAEGINPEGIPSSLY----RRCCRLRKVEPLKRALKELGFDAWFTGLRRDESP-SRAK 116
Query: 193 IPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEP 252
+P+V ID F ++K PL N D+W ++ A N+P N L+ QGY SIGC P
Sbjct: 117 LPIVSIDGDFPK-------VIKVFPLLNWTETDVWQYILANNVPYNPLYDQGYRSIGCYP 169
Query: 253 CTRP 256
CT P
Sbjct: 170 CTGP 173
>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS)
reductase subfamily; composed of plant-type APS
reductases containing a C-terminal redox active TRX
domain and an N-terminal reductase domain which is part
of a superfamily that includes N type ATP PPases. APS
reductase catalyzes the reduction of activated sulfate
to sulfite, a key step in the biosynthesis of
sulfur-containing metabolites. Sulfate is first
activated by ATP sulfurylase, forming APS, which can be
phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate
(PAPS). Depending on the organism, either APS or PAPS
can be used for sulfate reduction. Prokaryotes and fungi
use PAPS, whereas plants use both APS and PAPS. Since
plant-type APS reductase uses glutathione (GSH) as its
electron donor, the C-terminal domain may function like
glutaredoxin, a GSH-dependent member of the TRX
superfamily. The flow of reducing equivalents goes from
GSH -> C-terminal TRX domain -> N-terminal reductase
domain -> APS. Plant-type APS reductase shows no
homology to that of dissimilatory sulfate-reducing
bacteria, which is an iron-sulfur flavoenzyme. Also
included in the alignment is EYE2 from Chlamydomonas
reinhardtii, a protein required for eyespot assembly.
Length = 109
Score = 179 bits (455), Expect = 1e-55
Identities = 69/107 (64%), Positives = 84/107 (78%)
Query: 320 LVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRA 379
+V+ R IE LA+ + R L+VLYAPWC FCQAME SY ELAE+L G VKV KF A
Sbjct: 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNA 62
Query: 380 DGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426
DG+ +EFAK++LQL SFPTILFFPK+S +P+KYPSE+RDVDSL+ FV
Sbjct: 63 DGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109
>gnl|CDD|238846 cd01713, PAPS_reductase, This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly modified
version of the P loop, the fingerprint peptide of
mononucleotide-binding proteins, is present in the
active site of the protein, which appears to be a
positively charged cleft containing a number of
conserved arginine and lysine residues. Although PAPS
reductase has no ATPase activity, it shows a striking
similarity to the structure of the ATP pyrophosphatase
(ATP PPase) domain of GMP synthetase, indicating that
both enzyme families have evolved from a common
ancestral nucleotide-binding fold. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP) . It is also
found in NodP nodulation protein P from Rhizobium
meliloti which has ATP sulphurylase activity (sulphate
adenylate transferase) .
Length = 173
Score = 174 bits (444), Expect = 4e-53
Identities = 69/181 (38%), Positives = 94/181 (51%), Gaps = 14/181 (7%)
Query: 75 DIAIAFS-GAEDVVLIEYAKLTGR---PFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEY 130
++ ++FS G + VL+ A P V LDTG PET++F D V + YG+ +
Sbjct: 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVV 60
Query: 131 TFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGLR--AWITGQRKDQSPG 188
P + L F + CCRI KV PL+RALK L AWITG R+D+S
Sbjct: 61 VRPPDSPAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESA- 119
Query: 189 TRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISI 248
RA +PVV D GKG ++K NPL + +D+W +L +P N L+ QGY SI
Sbjct: 120 RRALLPVV-------WTDDGKGGILKVNPLLDWTYEDVWAYLARHGLPYNPLYDQGYRSI 172
Query: 249 G 249
G
Sbjct: 173 G 173
>gnl|CDD|129526 TIGR00434, cysH, phosophoadenylyl-sulfate reductase (thioredoxin).
This enzyme, involved in the assimilation of inorganic
sulfate, is designated cysH in Bacteria and MET16 in
Saccharomyces cerevisiae. Synonyms include
phosphoadenosine phosphosulfate reductase, PAPS
reductase, and PAPS reductase, thioredoxin-dependent. In
a reaction requiring reduced thioredoxin and NADPH, it
converts 3(prime)-phosphoadenylylsulfate (PAPS) to
sulfite and adenosine 3(prime),5(prime) diphosphate
(PAP). A related family of plant enzymes, scoring below
the trusted cutoff, differs in having a thioredoxin-like
C-terminal domain, not requiring thioredoxin, and in
having a preference for 5(prime)-adenylylsulfate (APS)
over PAPS [Central intermediary metabolism, Sulfur
metabolism].
Length = 212
Score = 158 bits (400), Expect = 4e-46
Identities = 81/226 (35%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 61 PLEIMDKAFQKFGNDIAIAFS-GAEDVVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDT 119
EI+ A+ FG + + S G + VL++ V LDTG PET++ D
Sbjct: 1 AQEIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDE 60
Query: 120 VEKHYGIRIE-YTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGL--RA 176
+ + Y + I+ Y ++ QA K +E + +RKV P+ RALK L A
Sbjct: 61 LTERYPLNIKVYKPDLSLAEQA---AKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASA 117
Query: 177 WITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIP 236
W TG R+DQ P +RA + ++ ID F ++K PL + +D++ ++ A N+P
Sbjct: 118 WFTGLRRDQGP-SRANLSILNIDEKFG--------ILKVLPLIDWTWKDVYQYIDAHNLP 168
Query: 237 INSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK-ECGLH 281
N LH QGY SIG TRPV G+ ER GRW KAK ECGLH
Sbjct: 169 YNPLHDQGYPSIGDYHSTRPVKEGEDERAGRW---KGKAKTECGLH 211
>gnl|CDD|131112 TIGR02057, PAPS_reductase, phosphoadenosine phosphosulfate
reductase, thioredoxin dependent. Requiring thioredoxin
as an electron donor, phosphoadenosine phosphosulfate
reductase catalyzes the reduction of
3'-phosphoadenylylsulfate (PAPS) to sulfite and
phospho-adenosine-phosphate (PAP). Found in
enterobacteria, cyanobacteria, and yeast, PAPS reductase
is related to a group of plant (TIGR00424) and bacterial
(TIGR02055) enzymes preferring 5'-adenylylsulfate (APS)
over PAPS as a substrate for reduction to sulfite
[Central intermediary metabolism, Sulfur metabolism].
Length = 226
Score = 136 bits (343), Expect = 1e-37
Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 19/232 (8%)
Query: 56 MESASPLEIMDKAFQKFGNDIAIAFS-GAEDVVLIEY-AKLTGRPFRVFSLDTGRLNPET 113
+E +P EI+ + F + + + G + +V + + ++ V +DT P+T
Sbjct: 8 LEKLTPQEIIAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQT 67
Query: 114 HQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECC-RIRKVRPLKRALK 172
D + K Y + + E +A K E I KV P++RALK
Sbjct: 68 LTLKDELTKKYYQTLNLYKYDGCESEADFEAK-YGKLLWQKDIEKYDYIAKVEPMQRALK 126
Query: 173 GLR--AWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFL 230
L AW TG+R+DQ RA +PV++ID + ++K NPL + + ++ +L
Sbjct: 127 ELNASAWFTGRRRDQG-SARANLPVIEID--------EQNGILKVNPLIDWTFEQVYQYL 177
Query: 231 RAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK-ECGLH 281
A N+P N L QGY SIG TR V G+ ER GRW K K ECG+H
Sbjct: 178 DAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK---GKLKTECGIH 226
>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family,
redox active TRX domains; composed of eukaryotic
proteins involved in oxidative protein folding in the
endoplasmic reticulum (ER) by acting as catalysts and
folding assistants. Members of this family include PDI
and PDI-related proteins like ERp72, ERp57 (or ERp60),
ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI,
ERp57, ERp72, P5, PDIR and ERp46 are all oxidases,
catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER. They also exhibit
reductase activity in acting as isomerases to correct
any non-native disulfide bonds, as well as chaperone
activity to prevent protein aggregation and facilitate
the folding of newly synthesized proteins. These
proteins usually contain multiple copies of a redox
active TRX (a) domain containing a CXXC motif, and may
also contain one or more redox inactive TRX-like (b)
domains. Only one a domain is required for the oxidase
function but multiple copies are necessary for the
isomerase function. The different types of PDIs may show
different substrate specificities and tissue-specific
expression, or may be induced by stress. PDIs are in
their reduced form at steady state and are oxidized to
the active form by Ero1, which is localized in the ER
through ERp44. Some members of this family also contain
a DnaJ domain in addition to the redox active a domains;
examples are ERdj5 and Pfj2. Also included in the family
is the redox inactive N-terminal TRX-like domain of
ERp29.
Length = 101
Score = 88.8 bits (221), Expect = 1e-21
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG-VKVGKFRADGDHKEFA 387
+N L L+ YAPWC C+A+ Y +LA++L+G G V V K + +
Sbjct: 6 DNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT-ANNDLC 64
Query: 388 KQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426
+ + +PTI FP S +PVKY R ++SL+ F+
Sbjct: 65 SEY-GVRGYPTIKLFPNGSKEPVKYEGP-RTLESLVEFI 101
>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38
(ERp38) subfamily; composed of proteins similar to the
P5-like protein first isolated from alfalfa, which
contains two redox active TRX (a) domains at the
N-terminus, like human P5, and a C-terminal domain with
homology to the C-terminal domain of ERp29, unlike human
P5. The cDNA clone of this protein (named G1) was
isolated from an alfalfa cDNA library by screening with
human protein disulfide isomerase (PDI) cDNA. The G1
protein is constitutively expressed in all major organs
of the plant and its expression is induced by treatment
with tunicamycin, indicating that it may be a
glucose-regulated protein. The G1 homolog in the
eukaryotic social amoeba Dictyostelium discoideum is
also described as a P5-like protein, which is located in
the endoplasmic reticulum (ER) despite the absence of an
ER-retrieval signal. G1 homologs from Aspergillus niger
and Neurospora crassa have also been characterized, and
are named TIGA and ERp38, respectively. Also included in
the alignment is an atypical PDI from Leishmania
donovani containing a single a domain, and the
C-terminal a domain of a P5-like protein from Entamoeba
histolytica.
Length = 105
Score = 77.7 bits (192), Expect = 1e-17
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGM-GVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400
L+ YAPWC C+ + Y +LA V + K AD +K+ AK K + FPT+
Sbjct: 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAK-KYGVSGFPTLK 80
Query: 401 FFPKHSAKPVKYPSEKRDVDSLMAFV 426
FFPK S +PVKY RD++ L+ FV
Sbjct: 81 FFPKGSTEPVKY-EGGRDLEDLVKFV 105
>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a')
subfamily; composed of the C-terminal redox active a'
domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI,
ERp72 and ERp57 are endoplasmic reticulum (ER)-resident
eukaryotic proteins involved in oxidative protein
folding. They are oxidases, catalyzing the formation of
disulfide bonds of newly synthesized polypeptides in the
ER. They also exhibit reductase activity in acting as
isomerases to correct any non-native disulfide bonds, as
well as chaperone activity to prevent protein
aggregation and facilitate the folding of newly
synthesized proteins. PDI and ERp57 have the abb'a'
domain structure (where a and a' are redox active TRX
domains while b and b' are redox inactive TRX-like
domains). PDI also contains an acidic region (c domain)
after the a' domain that is absent in ERp57. ERp72 has
an additional a domain at the N-terminus (a"abb'a'
domain structure). ERp57 interacts with the lectin
chaperones, calnexin and calreticulin, and specifically
promotes the oxidative folding of glycoproteins, while
PDI shows a wider substrate specificity. ERp72
associates with several ER chaperones and folding
factors to form complexes in the ER that bind nascent
proteins. EFP1 is a binding partner protein of thyroid
oxidase, which is responsible for the generation of
hydrogen peroxide, a crucial substrate of
thyroperoxidase, which functions to iodinate
thyroglobulin and synthesize thyroid hormones.
Length = 104
Score = 68.7 bits (169), Expect = 2e-14
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGM-GVKVGKFRADGD----HKEFAKQKLQLVSF 396
L+ YAPWC C+A+ Y ELAE+L+G V + K D EF F
Sbjct: 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKM--DATANDVPSEFVVD-----GF 74
Query: 397 PTILFFPK-HSAKPVKYPSEKRDVDSLMAFV 426
PTILFFP + P+KY R ++ L+ F+
Sbjct: 75 PTILFFPAGDKSNPIKY-EGDRTLEDLIKFI 104
>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily;
ERdj5, also known as JPDI and macrothioredoxin, is a
protein containing an N-terminal DnaJ domain and four
redox active TRX domains. This subfamily is composed of
the three TRX domains located at the C-terminal half of
the protein. ERdj5 is a ubiquitous protein localized in
the endoplasmic reticulum (ER) and is abundant in
secretory cells. It's transcription is induced during ER
stress. It interacts with BiP through its DnaJ domain in
an ATP-dependent manner. BiP, an ER-resident member of
the Hsp70 chaperone family, functions in ER-associated
degradation and protein translocation. Also included in
the alignment is the single complete TRX domain of an
uncharacterized protein from Tetraodon nigroviridis,
which also contains a DnaJ domain at its N-terminus.
Length = 104
Score = 67.7 bits (166), Expect = 3e-14
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
NR++PWL+ YAPWC CQA+ + A L+G VKVG ++ Q+ + +
Sbjct: 17 NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQ-KYESLC-QQANIRA 73
Query: 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426
+PTI +P +++K Y RD DS++ F+
Sbjct: 74 YPTIRLYPGNASKYHSYNGWHRDADSILEFI 104
>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain. This model
describes a domain of eukaryotic protein disulfide
isomerases, generally found in two copies. The high
cutoff for total score reflects the expectation of
finding both copies. The domain is similar to
thioredoxin but the redox-active disulfide region motif
is APWCGHCK [Protein fate, Protein folding and
stabilization].
Length = 102
Score = 65.0 bits (159), Expect = 4e-13
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 339 DPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG-VKVGKFRADGDHKEFAKQKLQLVSFP 397
L+ YAPWC C+ + Y +LA++L+ + + K A + ++ + FP
Sbjct: 14 KDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKDLASRFGVS--GFP 71
Query: 398 TILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
TI FFPK KPV Y RD+++++ FVN
Sbjct: 72 TIKFFPKGK-KPVDYEGG-RDLEAIVEFVN 99
>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of
eukaryotic proteins similar to human P5, a PDI-related
protein with a domain structure of aa'b (where a and a'
are redox active TRX domains and b is a redox inactive
TRX-like domain). Like PDI, P5 is located in the
endoplasmic reticulum (ER) and displays both isomerase
and chaperone activities, which are independent of each
other. Compared to PDI, the isomerase and chaperone
activities of P5 are lower. The first cysteine in the
CXXC motif of both redox active domains in P5 is
necessary for isomerase activity. The P5 gene was first
isolated as an amplified gene from a
hydroxyurea-resistant hamster cell line. The zebrafish
P5 homolog has been implicated to play a critical role
in establishing left/right asymmetries in the embryonic
midline. Some members of this subfamily are P5-like
proteins containing only one redox active TRX domain.
Length = 103
Score = 62.7 bits (153), Expect = 2e-12
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
N +D WL+ YAPWC C+ + + + A+ L+G+ VKVG AD + ++
Sbjct: 16 NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADVHQSLAQQYGVR--G 72
Query: 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426
FPTI F P Y R ++++
Sbjct: 73 FPTIKVFGAGKNSPQDYQGG-RTAKAIVSAA 102
>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin. Thioredoxins are small
enzymes that participate in redox reactions, via the
reversible oxidation of an active centre disulfide bond.
Some members with only the active site are not separated
from the noise.
Length = 104
Score = 60.7 bits (148), Expect = 1e-11
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQL 393
+ + P L+ YAPWC C+A+ Y +LA++ + VK K AD ++ + A + +
Sbjct: 14 VAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKD-DVKFAKVDAD-ENPDLASE-YGV 70
Query: 394 VSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429
FPTI FF K Y R D L+AF+
Sbjct: 71 RGFPTIKFFKN-GKKVSDY-VGARTKDDLVAFIKKH 104
>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic.
This model represents eukaryotic protein disulfide
isomerases retained in the endoplasmic reticulum (ER)
and closely related forms. Some members have been
assigned alternative or additional functions such as
prolyl 4-hydroxylase and
dolichyl-diphosphooligosaccharide-protein
glycotransferase. Members of this family have at least
two protein-disulfide domains, each similar to
thioredoxin but with the redox-active disulfide in the
motif PWCGHCK, and an ER retention signal at the extreme
C-terminus (KDEL, HDEL, and similar motifs).
Length = 462
Score = 65.1 bits (159), Expect = 2e-11
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADG---DHKEFAKQKLQLVSFPT 398
L+ YAPWC C+ + Y ELAE+ + V + D D F + FPT
Sbjct: 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVE-----GFPT 422
Query: 399 ILFFPKHS-AKPVKYPSEKRDVDSLMAFVN 427
I F P ++PV Y R ++ F+
Sbjct: 423 IKFVPAGKKSEPVPY-DGDRTLEDFSKFIA 451
Score = 43.9 bits (104), Expect = 1e-04
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 337 REDPWLIV-LYAPWCHFCQAMEGSYIELAEQL--EGMGVKVGKFRADGDHKEFAKQKLQL 393
+ +++V YAPWC C+++ Y + A++L +G +K+ K A + K+ A QK +
Sbjct: 16 KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT-EEKDLA-QKYGV 73
Query: 394 VSFPTILFFP--KHSAKPVKYPSEKRDVDSLMAFVN 427
+PT+ F + S P RD D ++ ++
Sbjct: 74 SGYPTLKIFRNGEDSVSDYNGP---RDADGIVKYMK 106
>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional.
Length = 477
Score = 58.6 bits (142), Expect = 3e-09
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 335 QNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG-VKVGKFRADGDHKEFAKQKLQL 393
+ L+ +YAPWC C+ +E Y EL E+ + + V K +G E ++
Sbjct: 372 FKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKM--NGTANETPLEEFSW 429
Query: 394 VSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
+FPTILF P+ Y E R V+ FVN
Sbjct: 430 SAFPTILFVKAGERTPIPYEGE-RTVEGFKEFVN 462
Score = 49.7 bits (119), Expect = 1e-06
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQL--EGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
L+ YAPWC C+ + Y + A+ L + + + A + E A Q+ + +PTI
Sbjct: 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELA-QEFGVRGYPTI 110
Query: 400 LFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429
FF K PV Y R D +++++ L
Sbjct: 111 KFFNK--GNPVNYSG-GRTADGIVSWIKKL 137
>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of
eukaryotic proteins similar to human TMX3, a TRX related
transmembrane protein containing one redox active TRX
domain at the N-terminus and a classical ER retrieval
sequence for type I transmembrane proteins at the
C-terminus. The TMX3 transcript is found in a variety of
tissues with the highest levels detected in skeletal
muscle and the heart. In vitro, TMX3 showed oxidase
activity albeit slightly lower than that of protein
disulfide isomerase.
Length = 104
Score = 51.3 bits (123), Expect = 2e-08
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 334 LQNR-EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG--VKVGKFRADGDHKEFAKQK 390
R ED WL+ YAPWC C+ +E + E+ +L+ G V+VGK A + A +
Sbjct: 10 KDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-YSSIAS-E 67
Query: 391 LQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
+ +PTI A + P K D ++ F N
Sbjct: 68 FGVRGYPTIKLLKGDLAYNYRGPRTK---DDIVEFAN 101
>gnl|CDD|237509 PRK13794, PRK13794, hypothetical protein; Provisional.
Length = 479
Score = 54.3 bits (131), Expect = 6e-08
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 64/250 (25%)
Query: 29 YGPHHKGVEGRIESTND-HEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAED-- 85
YGP + + +E+ + + YE+ + G + +K + +A+SG +D
Sbjct: 210 YGPGEETWKDMVEANKNVLDKYERNSIGF--------IRNTAEKINKPVTVAYSGGKDSL 261
Query: 86 VVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTK 145
L+ K G F V DTG PET + + VEKHYG+ I +RTK
Sbjct: 262 ATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLEI-------------IRTK 308
Query: 146 GLFSFYEDGHQE---------CCRIRKVRPLKRAL-----KGLRAWITGQRKDQSPGTRA 191
F+E + C + K+ PL + + +++ GQRK +S R+
Sbjct: 309 SE-EFWEKLEEYGPPARDNRWCSEVCKLEPLGKLIDEKYEGECLSFV-GQRKYES-FNRS 365
Query: 192 EIPVV--------QIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQ 243
+ P + QI + P+ + +W +L P N L+ Q
Sbjct: 366 KKPRIWRNPYIKKQILAA---------------PILHWTAMHVWIYLFREKAPYNKLYEQ 410
Query: 244 GYISIGCEPC 253
G+ IGC C
Sbjct: 411 GFDRIGCFMC 420
>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed
of eukaryotic proteins similar to Saccharomyces
cerevisiae MPD1 protein, which contains a single redox
active TRX domain located at the N-terminus, and an ER
retention signal at the C-terminus indicative of an
ER-resident protein. MPD1 has been shown to suppress the
maturation defect of carboxypeptidase Y caused by
deletion of the yeast PDI1 gene. Other characterized
members of this subfamily include the Aspergillus niger
prpA protein and Giardia PDI-1. PrpA is non-essential to
strain viability, however, its transcript level is
induced by heterologous protein expression suggesting a
possible role in oxidative protein folding during high
protein production. Giardia PDI-1 has the ability to
refold scrambled RNase and exhibits transglutaminase
activity.
Length = 109
Score = 48.9 bits (117), Expect = 2e-07
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD-HKEF-AKQKL 391
+ N L+ YAPWC C+ ++ Y + A++L+G+ V+V D D +K K +
Sbjct: 14 VHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDEDKNKPLCGKYGV 72
Query: 392 QLVSFPTILFFP------KHSAKPVKYPSEKRDVDSLMAFV 426
Q FPT+ F KH+ + + +++ FV
Sbjct: 73 Q--GFPTLKVFRPPKKASKHAVEDYNGERSAK---AIVDFV 108
>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein;
Provisional.
Length = 224
Score = 51.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 340 PWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
PW + YAPWC C+ M ++ LA+ L+G V V D ++ + +PT+
Sbjct: 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADL--DATRALNLAKRFAIKGYPTL 110
Query: 400 LFFPKHSAKPVKYPSEKRDVDSLMAF 425
L F K +Y R + L AF
Sbjct: 111 LLF--DKGKMYQYEGGDRSTEKLAAF 134
>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily;
ERdj5, also known as JPDI and macrothioredoxin, is a
protein containing an N-terminal DnaJ domain and four
redox active TRX domains. This subfamily is comprised of
the first TRX domain of ERdj5 located after the DnaJ
domain at the N-terminal half of the protein. ERdj5 is a
ubiquitous protein localized in the endoplasmic
reticulum (ER) and is abundant in secretory cells. It's
transcription is induced during ER stress. It interacts
with BiP through its DnaJ domain in an ATP-dependent
manner. BiP, an ER-resident member of the Hsp70
chaperone family, functions in ER-associated degradation
and protein translocation.
Length = 101
Score = 46.7 bits (111), Expect = 1e-06
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
N + W + Y+P C C + ++ E A++++G+ +++G GD + + + + S
Sbjct: 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNC-GDDRMLCRSQ-GVNS 72
Query: 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAF 425
+P++ FP P KY + R +SL+ F
Sbjct: 73 YPSLYVFPS-GMNPEKYYGD-RSKESLVKF 100
>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of
proteins similar to the TRX-related human transmembrane
protein, TMX. TMX is a type I integral membrane protein;
the N-terminal redox active TRX domain is present in the
endoplasmic reticulum (ER) lumen while the C-terminus is
oriented towards the cytoplasm. It is expressed in many
cell types and its active site motif (CPAC) is unique.
In vitro, TMX reduces interchain disulfides of insulin
and renatures inactive RNase containing incorrect
disulfide bonds. The C. elegans homolog, DPY-11, is
expressed only in the hypodermis and resides in the
cytoplasm. It is required for body and sensory organ
morphogeneis. Another uncharacterized TRX-related
transmembrane protein, human TMX4, is included in the
alignment. The active site sequence of TMX4 is CPSC.
Length = 101
Score = 46.2 bits (110), Expect = 1e-06
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGK 376
E W+I YAPWC CQ ++ + E A+ + +G+ V K
Sbjct: 16 EGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAK 54
>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I,
which includes proteins that exclusively encode a TRX
domain; and Group II, which are composed of fusion
proteins of TRX and additional domains. Group I TRX is a
small ancient protein that alter the redox state of
target proteins via the reversible oxidation of an
active site dithiol, present in a CXXC motif, partially
exposed at the protein's surface. TRX reduces protein
disulfide bonds, resulting in a disulfide bond at its
active site. Oxidized TRX is converted to the active
form by TRX reductase, using reducing equivalents
derived from either NADPH or ferredoxins. By altering
their redox state, TRX regulates the functions of at
least 30 target proteins, some of which are enzymes and
transcription factors. It also plays an important role
in the defense against oxidative stress by directly
reducing hydrogen peroxide and certain radicals, and by
serving as a reductant for peroxiredoxins. At least two
major types of functional TRXs have been reported in
most organisms; in eukaryotes, they are located in the
cytoplasm and the mitochondria. Higher plants contain
more types (at least 20 TRX genes have been detected in
the genome of Arabidopsis thaliana), two of which (types
f amd m) are located in the same compartment, the
chloroplast. Also included in the alignment are TRX-like
domains which show sequence homology to TRX but do not
contain the redox active CXXC motif. Group II proteins,
in addition to either a redox active TRX or a TRX-like
domain, also contain additional domains, which may or
may not possess homology to known proteins.
Length = 93
Score = 44.9 bits (107), Expect = 3e-06
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
E L P ++ +APWC C+A+ ELAE E VK K D ++ E A
Sbjct: 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAE--EYPKVKFVKVDVD-ENPELA- 56
Query: 389 QKLQLVSFPTILFF 402
++ + S PT LFF
Sbjct: 57 EEYGVRSIPTFLFF 70
>gnl|CDD|237510 PRK13795, PRK13795, hypothetical protein; Provisional.
Length = 636
Score = 48.8 bits (117), Expect = 4e-06
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 45/197 (22%)
Query: 76 IAIAFSGAED--VVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEY--- 130
++++FSG +D VVL + A+ + F+ F +TG PET + V + YGI +
Sbjct: 246 VSVSFSGGKDSLVVL-DLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADA 304
Query: 131 --TFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWIT--GQRKD 184
F AVE F ++ CC++ K+ P+ RA+K + +T GQRK
Sbjct: 305 GDAFWRAVEK---------FGPPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKY 355
Query: 185 QSPGTRAEIPVV--------QIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLRAMNIP 236
+S +RA+ P V QI S P+ + ++W ++ +P
Sbjct: 356 ES-FSRAKSPRVWRNPWVPNQIGAS---------------PIQDWTALEVWLYIFWRKLP 399
Query: 237 INSLHSQGYISIGCEPC 253
N L+ +G+ IGC C
Sbjct: 400 YNPLYERGFDRIGCWLC 416
>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46
(ERp46) subfamily; ERp46 is an ER-resident protein
containing three redox active TRX domains. Yeast
complementation studies show that ERp46 can substitute
for protein disulfide isomerase (PDI) function in vivo.
It has been detected in many tissues, however,
transcript and protein levels do not correlate in all
tissues, suggesting regulation at a posttranscriptional
level. An identical protein, named endoPDI, has been
identified as an endothelial PDI that is highly
expressed in the endothelium of tumors and hypoxic
lesions. It has a protective effect on cells exposed to
hypoxia.
Length = 102
Score = 44.6 bits (106), Expect = 4e-06
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGM--GVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
+ +APWC C+ + ++ +LA++ VK+ K + ++ Q+ +PT+
Sbjct: 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEF--QVRGYPTL 77
Query: 400 LFFPKHSAKPVKYPSEKRDVDSLMAFV 426
L F K K KY RD+DSL FV
Sbjct: 78 LLF-KDGEKVDKY-KGTRDLDSLKEFV 102
>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional.
Length = 417
Score = 48.2 bits (115), Expect = 5e-06
Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 40/210 (19%)
Query: 62 LEIMDKAFQKFGND---IAIAFSGAED-VVLIEYAKLTGRPFRVFSLDTGRLNPETHQFF 117
L I+ +K+ N I +FSG +D V AK V +DTG PET +
Sbjct: 167 LSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYV 226
Query: 118 DTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQE---------CCRIRKVRPLK 168
K Y + L G +F+E+ +E C K+ PLK
Sbjct: 227 KDFAKKYDLN-------------LDTLDGD-NFWENLEKEGIPTKDNRWCNSACKLMPLK 272
Query: 169 RALKGLRAW-----ITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKG 223
LK I G RK +S TRA + +E G P+ +
Sbjct: 273 EYLKKKYGNKKVLTIDGSRKYES-FTRANL-------DYERKSGFIDFQTNVFPILDWNS 324
Query: 224 QDIWNFLRAMNIPINSLHSQGYISIGCEPC 253
DIW+++ +I N L+ +G+ IGC C
Sbjct: 325 LDIWSYIYLNDILYNPLYDKGFERIGCYLC 354
>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of
proteins similar to human PDIR (for Protein Disulfide
Isomerase Related). PDIR is composed of three redox
active TRX (a) domains and an N-terminal redox inactive
TRX-like (b) domain. Similar to PDI, it is involved in
oxidative protein folding in the endoplasmic reticulum
(ER) through its isomerase and chaperone activities.
These activities are lower compared to PDI, probably due
to PDIR acting only on a subset of proteins. PDIR is
preferentially expressed in cells actively secreting
proteins and its expression is induced by stress.
Similar to PDI, the isomerase and chaperone activities
of PDIR are independent; CXXC mutants lacking isomerase
activity retain chaperone activity.
Length = 104
Score = 44.6 bits (106), Expect = 6e-06
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKV-GKFRADGDHKEFA 387
E+ + +E L++ YAPWC C+ M+ + + A +L+ G V +
Sbjct: 8 EDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDAL 67
Query: 388 KQKLQLVSFPTILFFPK 404
K++ + FPT +F
Sbjct: 68 KEEYNVKGFPTFKYFEN 84
>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin. Several proteins, such as
protein disulfide isomerase, have two or more copies of
a domain closely related to thioredoxin. This model is
designed to recognize authentic thioredoxin, a small
protein that should be hit exactly once by This model.
Any protein that hits once with a score greater than the
second (per domain) trusted cutoff may be taken as
thioredoxin [Energy metabolism, Electron transport].
Length = 101
Score = 43.4 bits (103), Expect = 1e-05
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQL 393
+ + + P L+ +APWC C+ + ELA++ EG VK K D ++ + A K +
Sbjct: 10 IASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVD-ENPDIA-AKYGI 66
Query: 394 VSFPTILFFPKHSAKPVK 411
S PT+L F K V
Sbjct: 67 RSIPTLLLFKN--GKEVD 82
>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins
[Posttranslational modification, protein turnover,
chaperones / Energy production and conversion].
Length = 127
Score = 44.1 bits (103), Expect = 2e-05
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
L+ +APWC C+A ELAE+ G V D + A+ + + S PT+L
Sbjct: 36 LVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLL 95
Query: 402 F 402
F
Sbjct: 96 F 96
>gnl|CDD|236300 PRK08576, PRK08576, hypothetical protein; Provisional.
Length = 438
Score = 45.5 bits (108), Expect = 4e-05
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 62 LEIMDKAFQKF-----GNDIAIAFSGAED--VVLIEYAKLTGRPFRVFSLDTGRLNPETH 114
LE +KA KF + + +SG +D L+ K G V+ +DTG P T
Sbjct: 218 LEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAFGDVTAVY-VDTGYEMPLTD 276
Query: 115 QFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQE-CCRIRKVRPLKRALKG 173
++ + V + G+ + V+V + G+ + H C KV L+ A++
Sbjct: 277 EYVEKVAEKLGVDLIRA---GVDVPMPIEKYGMPT-----HSNRWCTKLKVEALEEAIRE 328
Query: 174 LR--AWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDIWNFLR 231
L + G R +S R PVV+ T+F I LV P+ G + ++
Sbjct: 329 LEDGLLVVGDRDGESARRRLRPPVVERKTNFGKI------LVV-MPIKFWSGAMVQLYIL 381
Query: 232 AMNIPINSLHSQGYISIGCEPC 253
+ +N L+ +G+ +GC C
Sbjct: 382 MNGLELNPLYYKGFYRLGCYIC 403
>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein
family; composed of uncharacterized proteins of about
500-800 amino acids, containing an N-terminal DnaJ
domain followed by one redox active TRX domain. DnaJ is
a member of the 40 kDa heat-shock protein (Hsp40) family
of molecular chaperones, which regulate the activity of
Hsp70s. TRX is involved in the redox regulation of many
protein substrates through the reduction of disulfide
bonds. TRX has been implicated to catalyse the reduction
of Hsp33, a chaperone holdase that binds to unfolded
protein intermediates. The presence of DnaJ and TRX
domains in members of this family suggests that they
could be involved in a redox-regulated chaperone
network.
Length = 111
Score = 42.0 bits (99), Expect = 4e-05
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 313 DLFNSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGV 372
D F+ + ++F + EN ++ + P+LI + + WC C +E + E+ ++LE +GV
Sbjct: 1 DSFDYKYSLTFSQ--YENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGV 58
Query: 373 KVGKFRADGDHKEFAKQKLQLVSFPTIL 400
+ + H+ +KL S P I+
Sbjct: 59 GIAT--VNAGHERRLARKLGAHSVPAIV 84
>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large,
diverse group of proteins containing a TRX-fold. Many
members contain a classic TRX domain with a redox active
CXXC motif. They function as protein disulfide
oxidoreductases (PDOs), altering the redox state of
target proteins via the reversible oxidation of their
active site dithiol. The PDO members of this superfamily
include TRX, protein disulfide isomerase (PDI),
tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial
Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein
families. Members of the superfamily that do not
function as PDOs but contain a TRX-fold domain include
phosducins, peroxiredoxins and glutathione (GSH)
peroxidases, SCO proteins, GSH transferases (GST,
N-terminal domain), arsenic reductases, TRX-like
ferredoxins and calsequestrin, among others.
Length = 69
Score = 41.1 bits (96), Expect = 5e-05
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD-HKEFAKQKLQLVSFPTIL 400
L++ YAPWC FCQA+ ELA + GVK D D E ++ + PT++
Sbjct: 1 LVLFYAPWCPFCQALRPVLAELALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLV 58
Query: 401 FF 402
F
Sbjct: 59 VF 60
>gnl|CDD|131094 TIGR02039, CysD, sulfate adenylyltransferase, small subunit.
Metabolic assimilation of sulfur from inorganic sulfate,
requires sulfate activation by coupling to a nucleoside,
for the production of high-energy nucleoside
phosphosulfates. This pathway appears to be similar in
all prokaryotic organisms. Activation is first achieved
through sulfation of sulfate with ATP by sulfate
adenylyltransferase (ATP sulfurylase) to produce
5'-phosphosulfate (APS), coupled by GTP hydrolysis.
Subsequently, APS is phosphorylated by an APS kinase to
produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In
Escherichia coli, ATP sulfurylase is a heterodimer
composed of two subunits encoded by cysD and cysN, with
APS kinase encoded by cysC. These genes are located in a
unidirectionally transcribed gene cluster, and have been
shown to be required for the synthesis of
sulfur-containing amino acids. Homologous to this E.coli
activation pathway are nodPQH gene products found among
members of the Rhizobiaceae family. These gene products
have been shown to exhibit ATP sulfurase and APS kinase
activity, yet are involved in Nod factor sulfation, and
sulfation of other macromolecules [Central intermediary
metabolism, Sulfur metabolism].
Length = 294
Score = 40.9 bits (96), Expect = 8e-04
Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 47/238 (19%)
Query: 54 RGMESASPLEIMDKAFQKFGNDIAIAFSGAED-VVLIEYAKLT---GR-PFRVFSLDTGR 108
R +ES + + I+ + +F + + +S +D VL+ A+ G PF + +DTG
Sbjct: 2 RALESEA-IHIIREVAAEFERPV-MLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGW 59
Query: 109 LNPETHQFFDTVEKHYGIR-IEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPL 167
E F D + YG+R I ++ + G+ F +G I K L
Sbjct: 60 KFREMIAFRDHMVAKYGLRLIVHSNEEGIA-------DGINPF-TEGSALHTDIMKTEAL 111
Query: 168 KRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDG---------------GKG 210
++AL A G R+D+ +RA+ + +F D KG
Sbjct: 112 RQALDKNQFDAAFGGARRDEEK-SRAKERIFSFRNAFHQWDPKKQRPELWNLYNGRISKG 170
Query: 211 SLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRW 268
V+ PL+N DIW ++ A NIPI L Y + RPV+ +R+G
Sbjct: 171 ESVRVFPLSNWTELDIWRYIAAENIPIVPL----YFA-----AKRPVV----QRDGML 215
>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum
protein 44 (ERp44)-like subfamily; composed of
uncharacterized PDI-like eukaryotic proteins containing
only one redox active TRX (a) domain with a CXXS motif,
similar to ERp44. CXXS is still a redox active motif;
however, the mixed disulfide formed with the substrate
is more stable than those formed by CXXC motif proteins.
PDI-related proteins are usually involved in the
oxidative protein folding in the ER by acting as
catalysts and folding assistants. ERp44 is involved in
thiol-mediated retention in the ER.
Length = 100
Score = 37.3 bits (87), Expect = 0.002
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQL 393
NRED ++ YA WC F + + L+ ++ + +
Sbjct: 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESSIKP-SLLSRYGV 70
Query: 394 VSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426
V FPTIL F +S V+Y + R +DSL AF
Sbjct: 71 VGFPTILLF--NSTPRVRY-NGTRTLDSLAAFY 100
>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein
[Posttranslational modification, protein turnover,
chaperones / Energy production and conversion].
Length = 569
Score = 39.7 bits (93), Expect = 0.003
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 332 ARLQNREDPWLIVLYAPWCHFCQAMEG-SYIELAEQLEGMGVKVGKFRAD-----GDHKE 385
A + + P ++ YA WC C+ E ++ + Q V + +AD
Sbjct: 468 ALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVL--LQADVTANDPAITA 525
Query: 386 FAKQKLQLVSFPTILFFPKHSAKPVKYP 413
K+ L + PT LFF ++P
Sbjct: 526 LLKR-LGVFGVPTYLFFGPQGSEPEILT 552
>gnl|CDD|235375 PRK05253, PRK05253, sulfate adenylyltransferase subunit 2;
Provisional.
Length = 301
Score = 38.6 bits (91), Expect = 0.004
Identities = 60/238 (25%), Positives = 89/238 (37%), Gaps = 58/238 (24%)
Query: 64 IMDKAFQKFGNDIAIAFSGAED-VVLIEYAKLTGRPFRV-FSL---DTGRLNPETHQFFD 118
I+ + +F N + +S +D V++ A+ P ++ F L DTG PE +F D
Sbjct: 19 ILREVAAEFEN-PVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRD 77
Query: 119 TVEKHYGIR-IEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRAL--KGLR 175
K G+ I ++ P + R F G + K LK+AL G
Sbjct: 78 RRAKELGLELIVHSNPEGIA-----RGINPF---RHGSAKHTNAMKTEGLKQALEKYGFD 129
Query: 176 AWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVK------WN------------- 216
A G R+D+ +RA+ + F D K WN
Sbjct: 130 AAFGGARRDEE-KSRAKERIFSFRDEFGQWD------PKNQRPELWNLYNGRINKGEHIR 182
Query: 217 --PLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWED 272
PL+N DIW ++ NIPI L Y + RPV+ ER+G D
Sbjct: 183 VFPLSNWTELDIWQYIERENIPIVPL----YFAHE-----RPVV----ERDGMLIMVD 227
>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal
periplasmic domain of the bacterial protein DsbD. It
contains a CXXC motif in a TRX fold and shuttles the
reducing potential from the membrane domain (DsbD beta)
to the N-terminal periplasmic domain (DsbD alpha). DsbD
beta, a transmembrane domain comprising of eight
helices, acquires its reducing potential from the
cytoplasmic thioredoxin. DsbD alpha transfers the
acquired reducing potential from DsbD gamma to target
proteins such as the periplasmic protein disulphide
isomerases, DsbC and DsbG. This flow of reducing
potential from the cytoplasm through DsbD allows DsbC
and DsbG to act as isomerases in the oxidizing
environment of the bacterial periplasm. DsbD also
transfers reducing potential from the cytoplasm to
specific reductases in the periplasm which are involved
in the maturation of cytochromes.
Length = 104
Score = 36.0 bits (84), Expect = 0.005
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 331 LARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADG-----DHKE 385
LA+ + P + A WC C+ E E + V RAD +
Sbjct: 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITA 63
Query: 386 FAKQKLQLVSFPTILFFPKHSAKP 409
K+ + PT LF+
Sbjct: 64 LLKR-FGVFGPPTYLFYGPGGEPE 86
>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain.
Length = 105
Score = 35.1 bits (81), Expect = 0.011
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 15/86 (17%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKV--------------GKFRADGDHKEFA 387
L+V P C +C+ + ++ + E + KE A
Sbjct: 9 LVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKELA 68
Query: 388 KQKLQLVSFPTILFFPKHSAKPVKYP 413
+K + PTI+F + + P
Sbjct: 69 -RKYGVRGTPTIVFLDGDGKEVARLP 93
>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like. Thioredoxins are small
enzymes that participate in redox reactions, via the
reversible oxidation of an active centre disulfide bond.
Length = 81
Score = 32.6 bits (75), Expect = 0.051
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEG 358
E LA+ + P L+ A WC CQA++
Sbjct: 8 EALAKAREEGKPLLVDFGADWCPTCQALDR 37
>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 304
Score = 35.0 bits (81), Expect = 0.065
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 337 REDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSF 396
RE P L+ +APWC C+ + + +LA + +G K+ K D A Q + S
Sbjct: 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCD-AEPMVAAQ-FGVQSI 98
Query: 397 PTILFF 402
PT+ F
Sbjct: 99 PTVYAF 104
>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor;
Provisional.
Length = 571
Score = 35.2 bits (82), Expect = 0.067
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 24/110 (21%)
Query: 309 APASDLFNSQKLVSFRRTGIENLARLQ-------NREDPWLIVLYAPWCHFCQAMEGSYI 361
A+ +Q ++F+R I+ +A L + P ++ LYA WC C+ E Y
Sbjct: 440 GGAAAGAQTQAHLNFQR--IKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFE-KYT 496
Query: 362 ----ELAEQLEGMGVKVGKFRAD-----GDHKEFAKQKLQLVSFPTILFF 402
++ + L + +AD + K ++ PTILFF
Sbjct: 497 FSDPQVQQALADTVL----LQADVTANNAEDVALLKH-YNVLGLPTILFF 541
>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44
(ERp44) subfamily; ERp44 is an ER-resident protein,
induced during stress, involved in thiol-mediated ER
retention. It contains an N-terminal TRX domain, similar
to that of PDIa, with a CXFS motif followed by two redox
inactive TRX-like domains, homologous to the b and b'
domains of PDI. The CXFS motif in the N-terminal domain
allows ERp44 to form stable reversible mixed disulfides
with its substrates. Through this activity, ERp44
mediates the ER localization of Ero1alpha, a protein
that oxidizes protein disulfide isomerases into their
active form. ERp44 also prevents the secretion of
unassembled cargo protein with unpaired cysteines. It
also modulates the activity of inositol
1,4,5-triphosphate type I receptor (IP3R1), an
intracellular channel protein that mediates calcium
release from the ER to the cytosol.
Length = 108
Score = 31.2 bits (71), Expect = 0.27
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKF---RADGDHKEFAKQKLQLVSFPT 398
L+ YA WC F Q + + E A +++ GK + D D + + ++ +PT
Sbjct: 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81
Query: 399 I-LFFPKHSAKPVKYPSEKRDVDSLMAFV 426
+ LF K +Y + R V++L FV
Sbjct: 82 LKLFRNGMMMK-REYRGQ-RSVEALAEFV 108
>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional.
Length = 139
Score = 31.2 bits (71), Expect = 0.43
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
E L +L + P +I +APWC C+ + ++A + + GK R + E A+
Sbjct: 43 ETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAE------RSGKVRFVKVNTE-AE 95
Query: 389 QKL----QLVSFPTILFF 402
++L ++ S PTI+ F
Sbjct: 96 RELSARFRIRSIPTIMIF 113
>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was
originally isolated from the cyanobacterium
Synechococcus. It is found only in oxygenic
photosynthetic organisms. TRX is a small enzyme that
participate in redox reactions, via the reversible
oxidation of an active site dithiol present in a CXXC
motif. Disruption of the txlA gene suggests that the
protein is involved in the redox regulation of the
structure and function of photosynthetic apparatus. The
plant homolog (designated as HCF164) is localized in the
chloroplast and is involved in the assembly of the
cytochrome b6f complex, which takes a central position
in photosynthetic electron transport.
Length = 142
Score = 30.8 bits (70), Expect = 0.61
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 340 PWLIVLYAPWCHFCQAMEGSYIELAEQLEG 369
P L+ YA WC CQ M +L ++
Sbjct: 22 PTLVEFYADWCTVCQEMAPDVAKLKQKYGD 51
>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain.
Length = 183
Score = 30.8 bits (70), Expect = 0.78
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 383 HKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSE-KRDVDSLMAFVN 427
KE AK+ + PTIL F K K V YP E K D L F+
Sbjct: 30 DKEVAKK--YGIKEPTILLFRKFDEKQVTYPGEDKTTFDDLKKFIQ 73
>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA,
ResA, DsbE and similar proteins. TlpA, ResA and DsbE are
bacterial protein disulfide reductases with important
roles in cytochrome maturation. They are
membrane-anchored proteins with a soluble TRX domain
containing a CXXC motif located in the periplasm. The
TRX domains of this family contain an insert,
approximately 25 residues in length, which correspond to
an extra alpha helix and a beta strand when compared
with TRX. TlpA catalyzes an essential reaction in the
biogenesis of cytochrome aa3, while ResA and DsbE are
essential proteins in cytochrome c maturation. Also
included in this family are proteins containing a
TlpA-like TRX domain with domain architectures similar
to E. coli DipZ protein, and the N-terminal TRX domain
of PilB protein from Neisseria which acts as a disulfide
reductase that can recylce methionine sulfoxide
reductases.
Length = 116
Score = 29.5 bits (67), Expect = 1.1
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 330 NLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKV----GKFRADGDHKE 385
+L+ L+ + L+ +A WC C+A LA++ + GV+V K
Sbjct: 13 SLSDLKGK--VVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKA 70
Query: 386 FAKQKLQLVSFPTIL 400
F K+ ++FP +L
Sbjct: 71 FLKKY--GITFPVLL 83
>gnl|CDD|222346 pfam13728, TraF, F plasmid transfer operon protein. TraF protein
undergoes proteolytic processing associated with export.
The 19 amino acids at the amino terminus of the
polypeptides appear to constitute a typical membrane
leader peptide - not included in this family, while the
remainder of the molecule is predicted to be primarily
hydrophilic in character. F plasmid TraF and TraH are
required for F pilus assembly and F plasmid transfer,
and they are both localised to the outer membrane in the
presence of the complete F transfer region, especially
TraV, the putative anchor.
Length = 215
Score = 29.9 bits (68), Expect = 1.9
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 16/83 (19%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQ--LEGMGVKV-GKF-------RADGDHKEFAKQKL 391
L Y C +CQA A++ + V V G R D Q+L
Sbjct: 124 LFFFYRGDCPYCQAQAPILQAFADKYGFSVIPVSVDGGPLPGFPNNRVDTGQ----AQRL 179
Query: 392 QLVSFPTILFFPKHSA--KPVKY 412
+ + P + + KPV Y
Sbjct: 180 GVKTTPALFLVDPKTGKVKPVAY 202
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 30.0 bits (68), Expect = 2.3
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 17/78 (21%)
Query: 186 SPGTRAEIPVVQIDTSFEGIDGGK--GSLVKWNPLA--NVKG------QDIWNFLRAMNI 235
P F GI GG SLV LA V G + I + +R +N
Sbjct: 62 KPSFTILRDGADTGIRFAGIPGGHEFTSLV----LAILQVGGHGPKLDEGIIDRIRRLN- 116
Query: 236 PINSLHSQGYISIGCEPC 253
LH + Y+S+ C+ C
Sbjct: 117 --GPLHFETYVSLTCQNC 132
>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase
(QSOX) subfamily; QSOX is a eukaryotic protein
containing an N-terminal redox active TRX domain,
similar to that of PDI, and a small C-terminal flavin
adenine dinucleotide (FAD)-binding domain homologous to
the yeast ERV1p protein. QSOX oxidizes thiol groups to
disulfides like PDI, however, unlike PDI, this oxidation
is accompanied by the reduction of oxygen to hydrogen
peroxide. QSOX is localized in high concentrations in
cells with heavy secretory load and prefers peptides and
proteins as substrates, not monothiols like glutathione.
Inside the cell, QSOX is found in the endoplasmic
reticulum and Golgi. The flow of reducing equivalents in
a QSOX-catalyzed reaction goes from the dithiol
substrate -> dithiol of the QSOX TRX domain -> dithiols
of the QSOX ERV1p domain -> FAD -> oxygen.
Length = 114
Score = 28.0 bits (63), Expect = 3.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 332 ARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG 369
+ L WL+ YA WC C+A ++ +LA L
Sbjct: 13 SALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRK 50
>gnl|CDD|114761 pfam06057, VirJ, Bacterial virulence protein (VirJ). This family
consists of several bacterial VirJ virulence proteins.
VirJ is thought to be involved in the type IV secretion
system. It is thought that the substrate proteins
localised to the periplasm may associate with the pilus
in a manner that is mediated by VirJ, and suggest a
two-step process for type IV secretion in Agrobacterium.
Length = 192
Score = 28.8 bits (65), Expect = 3.7
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 14/67 (20%)
Query: 3 LSSSSSAAAALLNGSGSISSSFAVCYYGPHHK----------GVEGRIESTNDH---EDY 49
L A + + + C YG K G E + H DY
Sbjct: 119 LGWDGEGKADPVPDLARLPPARVQCIYGQDEKDTACPSLRQRGAE-VVALPGGHHFDGDY 177
Query: 50 EKLARGM 56
E LA+ +
Sbjct: 178 EALAKRI 184
>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein
containing a redox-inactive TRX-like domain. Its gene
has been sequenced from several gammaproteobacteria and
actinobacteria.
Length = 96
Score = 27.6 bits (62), Expect = 4.3
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQL 393
++ + P ++ +AP + + LAE+ +G V + + D + Q+ +
Sbjct: 8 QESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLA---KVNCDAQPQIAQQFGV 64
Query: 394 VSFPTILFFPKHSAKPV 410
+ PT+ F +PV
Sbjct: 65 QALPTVYLFAA--GQPV 79
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 29.4 bits (66), Expect = 4.4
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 291 SQHINING-NGVAQHTNGSAPASDLFNSQKLVSFRRTGIENLARLQNREDPWLIVL 345
S + + + N A N ++ A + F L G+ +L ++ W I+L
Sbjct: 146 SANQSFSATNISAAEENFTSAALEYFERGVLELHVSRGVTDLGNIR-----WQILL 196
>gnl|CDD|223848 COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid
metabolism].
Length = 294
Score = 29.2 bits (66), Expect = 4.5
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 22 SSFAVCYYGPHHK--GVEGRIESTNDHEDYEKLARGMESASPLEIMDKAFQKFGNDIAIA 79
S+ VC HH R+E+ D +E+L +E PL+ D K + A
Sbjct: 45 SNLKVCPKCGHHMRISARERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARK 104
Query: 80 FSGAEDVVLIEYAKLTGRP 98
+G +D V+ + G P
Sbjct: 105 KTGLDDAVVTGEGTINGLP 123
>gnl|CDD|237138 PRK12563, PRK12563, sulfate adenylyltransferase subunit 2;
Provisional.
Length = 312
Score = 29.0 bits (65), Expect = 4.6
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 32/208 (15%)
Query: 56 MESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAKLTGR----PFRVFSLDTGRLNP 111
+E+ S + I+ + + + + G + VV++ A R PF + +DT
Sbjct: 22 LEAES-IHILREVVAECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFR 80
Query: 112 ETHQFFDTVEKHYGIR-IEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRA 170
E F D K G+ + + P+ + R F H + + K + LK+A
Sbjct: 81 EMIDFRDRRAKELGLDLVVHHNPDGIA-----RGIVPFRHGSALHTD---VAKTQGLKQA 132
Query: 171 LK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWN------------ 216
L G A I G R+D+ +RA+ + ++F D W+
Sbjct: 133 LDHHGFDAAIGGARRDEEK-SRAKERIFSFRSAFHRWDPKAQRPELWSLYNARLRRGESL 191
Query: 217 ---PLANVKGQDIWNFLRAMNIPINSLH 241
PL+N D+W ++ IP+ L+
Sbjct: 192 RVFPLSNWTELDVWQYIAREKIPLVPLY 219
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional.
Length = 846
Score = 29.2 bits (65), Expect = 5.0
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 298 GNGVAQHTNGSAPASD-LFNSQKLVSFRRTGIENLARLQNREDPWLIVLY 346
G + QH N A ++ S F + + L R + +ED W+ LY
Sbjct: 388 GQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLY 437
>gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative. The gene product may
represent a DNA helicase. Eukaryotic members of this
family have been characterized as binding certain
single-stranded G-rich DNA sequences (GGGGT and GGGCT).
A number of related proteins are characterized as
helicases [DNA metabolism, DNA replication,
recombination, and repair].
Length = 637
Score = 29.0 bits (65), Expect = 6.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 192 EIPVVQIDTSFEGIDGG----KGSLVKWNPLANVKGQDIWNFLRAMNIPINSL 240
IP++ IDTS G + S K+NP +I L M +P N +
Sbjct: 480 GIPLLFIDTS--GCELFELKEADSTSKYNPGEAELVSEIIQALVKMGVPANDI 530
>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 28.0 bits (63), Expect = 7.0
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 20/73 (27%)
Query: 337 REDPWLIVLYAPWCHF---C---QAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQK 390
RE + P C Q + A+ L G KV + G +E
Sbjct: 67 REKDLIKDAGVPGKPVLGICLGHQLL-------AKAL---GGKVER----GPKREIGWTP 112
Query: 391 LQLVSFPTILFFP 403
++L LF
Sbjct: 113 VELTEGDDPLFAG 125
>gnl|CDD|232867 TIGR00194, uvrC, excinuclease ABC, C subunit. This family consists
of the DNA repair enzyme UvrC, an ABC excinuclease
subunit which interacts with the UvrA/UvrB complex to
excise UV-damaged nucleotide segments [DNA metabolism,
DNA replication, recombination, and repair].
Length = 574
Score = 28.5 bits (64), Expect = 7.4
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
Query: 33 HKGVEGRIESTNDHEDYEKLARGMES-ASPLEIMDKAFQKFGNDI---AIAFSGAED--- 85
K +E ++E +++ ++E+ AR + A+ E+ +K + I IA + +
Sbjct: 196 IKELEQKMEKASENLEFEEAARIRDQIAAVRELNEKQHVSLTDLIDLDIIAVAFDGNVAA 255
Query: 86 --VVLIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHY 124
V I KL GR FSL L+ F + + Y
Sbjct: 256 IQVFFIRQGKLIGRDQFDFSLPGTDLDELVETF---LIQFY 293
>gnl|CDD|236266 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 789
Score = 28.5 bits (64), Expect = 7.7
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 87 VLIEYAKLTGRPFRVFSLDTGRLNPETHQ------------FFDTVEKHYGIRIEYT 131
+L Y + TG PF F + R NP H F +T HY I+IE+
Sbjct: 390 ILTNYFE-TGLPFLCFKDNANRANPNAHAGIIRSSNLCTEIFQNTAPNHYKIKIEFE 445
>gnl|CDD|239304 cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP1 subfamily; EFP1
is a binding partner protein of thyroid oxidase (ThOX),
also called Duox. ThOX proteins are responsible for the
generation of hydrogen peroxide, a crucial substrate of
thyroperoxidase, which functions to iodinate
thyroglobulin and synthesize thyroid hormones. EFP1 was
isolated through a yeast two-hybrid method using the
EF-hand fragment of dog Duox1 as a bait. It could be one
of the partners in the assembly of a multiprotein
complex constituting the thyroid hydrogen peroxide
generating system. EFP1 contains two TRX domains related
to the redox active TRX domains of protein disulfide
isomerase (PDI). This subfamily is composed of the
N-terminal TRX domain of EFP1, which contains a CXXS
sequence in place of the typical CXXC motif, similar to
ERp44. The CXXS motif allows the formation of stable
mixed disulfides, crucial for the ER-retention function
of ERp44.
Length = 113
Score = 27.0 bits (60), Expect = 8.3
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 306 NGSAPASDLFNSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAE 365
+ +P D + Q ++ L+ + L++ YAPW QA + ++A+
Sbjct: 6 SQRSPVLDFYKGQ---------LDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQ 56
Query: 366 QL 367
+L
Sbjct: 57 KL 58
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 28.4 bits (64), Expect = 9.3
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 111 PETHQFFDTVEKHYGIRIEYTFPNAV 136
P+ +F++ +EKH + I YT P A+
Sbjct: 317 PDPGRFWEIIEKH-KVTIFYTAPTAI 341
>gnl|CDD|129606 TIGR00515, accD, acetyl-CoA carboxylase, carboxyl transferase, beta
subunit. The enzyme acetyl-CoA carboxylase contains a
biotin carboxyl carrier protein or domain, a biotin
carboxylase, and a carboxyl transferase. This model
represents the beta chain of the carboxyl transferase
for cases in which the architecture of the protein is as
in E. coli, in which the carboxyltransferase portion
consists of two non-identical subnits, alpha and beta
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 285
Score = 27.8 bits (62), Expect = 9.8
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 22 SSFAVCYYGPHHKGVEG--RIESTNDHEDYEKLARGMESASPLEIMDKAFQKFGNDIAIA 79
+ VC HH ++ RIES D +E+ +E PL+ D +K+ + IA A
Sbjct: 43 RNLEVCPKCDHHMRMDARERIESLLDEGSFEEFNSHLEPKDPLKFKDS--KKYKDRIAKA 100
Query: 80 --FSGAEDVVLIEYAKLTGRPFRVFSLD 105
+G +D V+ L G P V D
Sbjct: 101 QKETGEKDAVVTGKGTLYGMPIVVAVFD 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.414
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,887,147
Number of extensions: 2115722
Number of successful extensions: 2038
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1990
Number of HSP's successfully gapped: 77
Length of query: 430
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 330
Effective length of database: 6,502,202
Effective search space: 2145726660
Effective search space used: 2145726660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)