RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 042284
(430 letters)
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide
binding, thiosulfonate intermediate, oxidoreductase;
HET: ADX; 2.70A {Pseudomonas aeruginosa}
Length = 275
Score = 297 bits (761), Expect = 2e-99
Identities = 134/247 (54%), Positives = 179/247 (72%), Gaps = 3/247 (1%)
Query: 47 EDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAKLTGRPFRVFSLDT 106
D LA + SP +I+ AF+ FG+++ I+FSGAEDVVL++ A R +VFSLDT
Sbjct: 28 FDLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDT 87
Query: 107 GRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRP 166
GRL+PET++F D V +HYGI I+ P+ ++ LV+ KGLFSFY DGH ECC IRK+ P
Sbjct: 88 GRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEP 147
Query: 167 LKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKGQDI 226
LKR L G+RAW TGQR+DQSPGTR+++ V++ID +F + K+NPL+++ +++
Sbjct: 148 LKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPL---YKFNPLSSMTSEEV 204
Query: 227 WNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHNGNIK 286
W ++R + +P NSLH +GYISIGCEPCTRPVLP QHEREGRWWWE+A KECGLH GN+
Sbjct: 205 WGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNLI 264
Query: 287 QEELSQH 293
+ L H
Sbjct: 265 SKALEHH 271
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 285 bits (732), Expect = 3e-95
Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 17/240 (7%)
Query: 47 EDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFS-GAEDVVLIEYAKLTGRPFRVFSLD 105
+ +E + A + ++ S G + V + V D
Sbjct: 19 LALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTD 78
Query: 106 TGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVR 165
TG L PET++F D + + ++ R L+ +G ++ I KV
Sbjct: 79 TGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVE 138
Query: 166 PLKRALKGL--RAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKG 223
P+ RALK L + W G R++QS +RA +PV+ I + K P+ +
Sbjct: 139 PMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQ----------RGVFKVLPIIDWDN 187
Query: 224 QDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHNG 283
+ I+ +L+ + + L +GY+S+G TR PG E E R++ +ECGLH G
Sbjct: 188 RTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGL---KRECGLHEG 244
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS
reductase, oxidoreductase; HET: A3P; 2.10A
{Saccharomyces cerevisiae}
Length = 261
Score = 255 bits (652), Expect = 3e-83
Identities = 66/256 (25%), Positives = 106/256 (41%), Gaps = 21/256 (8%)
Query: 47 EDYEKLARGMES-ASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYA---KLTGRPFRVF 102
E + + +P EI+ + F + G +V I+ +
Sbjct: 15 EQLDHWNEQLIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELL 74
Query: 103 SLDTGRLNPETHQFFDTVEKHYG----IRIEYTFPNAVEVQALVRTKGLFSFYEDGHQEC 158
+DT P+T + +EK Y I P+ E +A +K +E +
Sbjct: 75 FIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKY 134
Query: 159 CRIRKVRPLKRALKG--LRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWN 216
+ KV P RA K + A TG+RK Q R+++ +++ID ++K N
Sbjct: 135 DYLAKVEPAHRAYKELHISAVFTGRRKSQGS-ARSQLSIIEID--------ELNGILKIN 185
Query: 217 PLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK 276
PL N + + ++ A N+P N L GY SIG T+PV G+ ER GRW +
Sbjct: 186 PLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGKA--KT 243
Query: 277 ECGLHNGNIKQEELSQ 292
ECG+H + + L Q
Sbjct: 244 ECGIHEASRFAQFLKQ 259
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 239 bits (613), Expect = 6e-78
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 14/207 (6%)
Query: 47 EDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFS-GAEDVVLIEYAKLTGRPFRVFSLD 105
+ +E + A + ++ S G + V + V D
Sbjct: 18 LALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTD 77
Query: 106 TGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVR 165
TG L PET++F D + + ++ R L+ +G ++ I KV
Sbjct: 78 TGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVE 137
Query: 166 PLKRALKGL--RAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKG 223
P+ RALK L + W G R++QS +RA +PV+ I + K P+ +
Sbjct: 138 PMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQ----------RGVFKVLPIIDWDN 186
Query: 224 QDIWNFLRAMNIPINSLHSQGYISIGC 250
+ I+ +L+ + + L +GY+S+G
Sbjct: 187 RTIYQYLQKHGLKYHPLWDEGYLSVGD 213
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase,
nucleotide-binding; HET: FAD; 1.90A {Saccharomyces
cerevisiae}
Length = 306
Score = 167 bits (423), Expect = 1e-48
Identities = 45/269 (16%), Positives = 86/269 (31%), Gaps = 25/269 (9%)
Query: 40 IESTNDHEDYEKLARGMESA---SPLEIMDKAFQKFG---NDIAIAFSGAED--VVLIEY 91
S + ++ + A + ++ + F ++ +I+ +++G +D V+L+ Y
Sbjct: 14 TNSYLHIDQKSQIIASTQEAIRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLY 73
Query: 92 AKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLFSFY 151
F + + ++ + + I E TFP + S Y
Sbjct: 74 LSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVF-IDQEETFPTLENFVLETSERYCLSLY 132
Query: 152 EDGHQECCRIRKVRPLKRALK---GLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGIDGG 208
E Q + + +K A + G R P A P + D
Sbjct: 133 ESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD-PFGEALKP-------IQRTDSN 184
Query: 209 KGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRP-----VLPGQHE 263
++ PL + +IW+FL N PI L+ +G+ SIG + P
Sbjct: 185 WPDFMRLQPLLHWDLTNIWSFLLYSNEPICGLYGKGFTSIGGINNSLPNPHLRKDSNNPA 244
Query: 264 REGRWWWEDAKAKECGLHNGNIKQEELSQ 292
W A K+ +
Sbjct: 245 LHFEWEIIHAFGKDAEGERSSAINTSPIS 273
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein,
rossmann- like fold, APO-form, extended loop region;
HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A*
3g6k_A*
Length = 308
Score = 158 bits (400), Expect = 2e-45
Identities = 41/279 (14%), Positives = 89/279 (31%), Gaps = 20/279 (7%)
Query: 33 HKGVEGRIESTNDHEDYEKLARGMESASPLEIMDKAFQKFG---NDIAIAFSGAED--VV 87
+ ++ + + + + + ++++ F K+ +I+ +++G +D V+
Sbjct: 15 YNLTSSYLQIAAESDSIIAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVL 74
Query: 88 LIEYAKLTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVE-VQALVRTKG 146
L+ Y + + L + + + H+F T I + TF ++
Sbjct: 75 LLLYLS-CLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYS 133
Query: 147 LFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFEGID 206
L + D + + +A + G R P P + D
Sbjct: 134 LSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTD-PFGEHLKP-------IQKTD 185
Query: 207 GGKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIGCEPCTRP-----VLPGQ 261
+ PL + +IW+FL N PI L+ G+ S+G T P
Sbjct: 186 ANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNPHLRKDKNS 245
Query: 262 HEREGRWWWEDAKAKECGLHNGNIKQEELSQHININGNG 300
+ + WE + + + N
Sbjct: 246 TPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENL 284
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 80.5 bits (199), Expect = 1e-18
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM-GVKVGKFRADGDHKEFAKQKLQLV 394
+ + LI YAPWC C+ +E Y L ++ +G + + K D + + ++
Sbjct: 23 DPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKM--DATANDITNDQYKVE 80
Query: 395 SFPTILFFPK-HSAKPVKYPSEKRDVDSLMAFVN 427
FPTI F P P+K+ RD++ L F++
Sbjct: 81 GFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFID 114
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 79.3 bits (196), Expect = 4e-18
Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM----GVKVGKFRADGDHKEFAKQKL 391
+ E ++ Y PW A + +L+ + + + ++
Sbjct: 31 DPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRV 90
Query: 392 QLVSFPTILFFPK-HSAKPVKYPSEKRDVDSLMAFVN 427
FPT+ ++ + +P +Y + R + + +FV
Sbjct: 91 S--GFPTMRYYTRIDKQEPFEYSGQ-RYLSLVDSFVF 124
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 78.5 bits (194), Expect = 6e-18
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
E W+I YAPWC CQ ++ + AE E + V + K + + + + + P
Sbjct: 22 EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVT-EQPGLS-GRFIINALP 79
Query: 398 TILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
TI + +Y R + F++
Sbjct: 80 TIYHCKD--GEFRRYQGP-RTKKDFINFIS 106
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 79.0 bits (195), Expect = 6e-18
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
+ WL+ YAPWC CQ + + + A L+ + VKVG AD H+ + +
Sbjct: 33 QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNAD-KHQSLG-GQYGVQG 89
Query: 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
FPTI F + KP Y R ++++
Sbjct: 90 FPTIKIFGANKNKPEDYQGG-RTGEAIVDAAL 120
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 74.7 bits (184), Expect = 2e-16
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG--VKVGKFRADGDHKEF 386
N +D L+ YAPWC C+ Y ++A L+ + V K A
Sbjct: 25 GNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT-SASML 83
Query: 387 AKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
A K + +PTI K + V Y R + ++A V
Sbjct: 84 A-SKFDVSGYPTIKILKK--GQAVDYDGS-RTQEEIVAKVR 120
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 73.5 bits (181), Expect = 2e-16
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQL--EGMGVKVGKFRADGDHKEFAKQKLQLVS 395
E I YAPWC C+ + ++ EL+++ GVK+ + + K +
Sbjct: 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT-AERNIC-SKYSVRG 78
Query: 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
+PT+L F + K ++ RD+DSL FV
Sbjct: 79 YPTLLLF-RGGKKVSEHSGG-RDLDSLHRFVL 108
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 74.0 bits (182), Expect = 3e-16
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG----VKVGKFRADGDHKEFAKQKL 391
+ LI YAPWC C+A+ Y EL V + K A +
Sbjct: 23 DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD----- 77
Query: 392 QLVSFPTILFFPK-HSAKPVKYPSEKRDVDSLMAFVN 427
++ FPTI +P +PV Y R V+ L+ F+
Sbjct: 78 EIQGFPTIKLYPAGAKGQPVTYSGS-RTVEDLIKFIA 113
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 73.6 bits (181), Expect = 4e-16
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG---VKVGKFRADGDHKEFAKQKLQ 392
+ ED W++ YAPWC C+ +E + A +++ VK+ A ++ A +
Sbjct: 23 DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT-VNQVLA-SRYG 80
Query: 393 LVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
+ FPTI F K PV Y R +++
Sbjct: 81 IRGFPTIKIFQK-GESPVDYDGG-RTRSDIVSRAL 113
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 73.1 bits (180), Expect = 4e-16
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG--VKVGKFRADGDHKEF 386
N A L+ YAPWC C+A+ Y + A +L+ G +++ K A + +
Sbjct: 15 SNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT-EESDL 73
Query: 387 AKQKLQLVSFPTILFFPK-HSAKPVKYPSEKRDVDSLMAFVN 427
A Q+ + +PTI FF +A P +Y + R+ D ++ ++
Sbjct: 74 A-QQYGVRGYPTIKFFRNGDTASPKEYTAG-READDIVNWLK 113
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 72.4 bits (178), Expect = 9e-16
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
+ W++ YAPWC CQ + LA ++G V+ GK + + QK + +
Sbjct: 19 QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK-VRAGKVDCQ-AYPQTC-QKAGIKA 75
Query: 396 FPTILFFP---KHSAKPVKYPSEKRDVDSLMAFVNA 428
+P++ + + + + RD ++ A +
Sbjct: 76 YPSVKLYQYERAKKSIWEEQINS-RDAKTIAALIYG 110
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 77.1 bits (189), Expect = 3e-15
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 335 QNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLV 394
+ ++PWL+ +APW +A+ + + L G +KVG D E +
Sbjct: 452 ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYG-QLKVGT--LDCTIHEGLCNMYNIQ 508
Query: 395 SFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
++PT + F + +Y + ++ F+
Sbjct: 509 AYPTTVVFNQS--SIHEY-EGHHSAEQILEFIE 538
Score = 71.7 bits (175), Expect = 2e-13
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
+ W++ YAPW Q + LA ++G V+ GK + + + K + +
Sbjct: 673 QGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQ-AYPQTCQ-KAGIKA 729
Query: 396 FPTILFFPKHSAKPVKYPSEK--RDVDSLMAFVN 427
+P++ + AK + + RD ++ A +
Sbjct: 730 YPSVKLYQYERAKKSIWEEQINSRDAKTIAALIY 763
Score = 65.2 bits (158), Expect = 2e-11
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
N + W + Y+P + ++ E A++++G+ +++G D + + + S
Sbjct: 131 NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL-LRIGAVNCG-DDRMLCR-MKGVNS 187
Query: 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
+P++ F VKY + R +SL+AF
Sbjct: 188 YPSLFIFRS-GMAAVKY-NGDRSKESLVAFAM 217
Score = 64.8 bits (157), Expect = 3e-11
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 319 KLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFR 378
+VS + L + + ++ W++ Y+PW H Q + + +A L G+ + VG
Sbjct: 544 SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL-INVGSVD 602
Query: 379 ADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSE---KRDVDSLMAFVN 427
+ F + + +P I F+P+ S+K +Y S RD SL ++
Sbjct: 603 CG-QYHSFCT-QENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGL 652
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 75.8 bits (186), Expect = 3e-15
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQL-----EGMGVKVGKFRADGDH 383
EN+ + N D L+ YA WC F Q + + E ++ + V + D H
Sbjct: 13 ENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD-QH 71
Query: 384 KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
+ A Q+ ++ +PT+ F +Y + R V +L ++
Sbjct: 72 SDIA-QRYRISKYPTLKLFRNGMMMKREYRGQ-RSVKALADYIR 113
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 74.9 bits (183), Expect = 1e-14
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
++ D L +APWC C+ M Y++ AE L + + + ++++
Sbjct: 22 DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT-ENQDLC- 79
Query: 389 QKLQLVSFPTILFFPK-HSAKPVKYPSEKRDVDSLMAFVN 427
+ + FP++ F + Y R ++++ F+
Sbjct: 80 MEHNIPGFPSLKIFKNSDVNNSIDYEGP-RTAEAIVQFMI 118
Score = 72.2 bits (176), Expect = 7e-14
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
+ + L++ YAPWC C+ + +Y ELA+ V + D + ++
Sbjct: 374 DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE--G 431
Query: 396 FPTILFFPK-HSAKPVKYPSEKRDVDSLMAFVN 427
+PTI+ +P ++ V Y R +DSL F+
Sbjct: 432 YPTIVLYPGGKKSESVVYQGS-RSLDSLFDFIK 463
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 71.8 bits (176), Expect = 2e-14
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG--VKVGKFRADGDHKEF 386
N +D L+ YAPWC C+ Y ++A L+ + V K A
Sbjct: 23 ANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT-SASVL 81
Query: 387 AKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
A + + +PTI K + V Y R + ++A V
Sbjct: 82 A-SRFDVSGYPTIKILKK--GQAVDYEGS-RTQEEIVAKVR 118
Score = 68.7 bits (168), Expect = 2e-13
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM--GVKVGKFRADGDHKEF 386
EN + N D L+ YAPWC C+ + Y + A++L + + K A +
Sbjct: 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT-AETDL 196
Query: 387 AKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
A ++ + +PT+ F K +P Y + R+ ++ ++
Sbjct: 197 A-KRFDVSGYPTLKIFRK--GRPYDY-NGPREKYGIVDYMI 233
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 73.7 bits (180), Expect = 2e-14
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG-VKVGKFRADGDHKEFAKQKLQLV 394
N LI YAPWC C+ +E Y EL E+L + + K D + ++
Sbjct: 368 NENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKM--DATANDVP-SPYEVR 424
Query: 395 SFPTILFFPK-HSAKPVKYPSEKRDVDSLMAFVN 427
FPTI F P P KY R++ ++++
Sbjct: 425 GFPTIYFSPANKKLNPKKYEGG-RELSDFISYLQ 457
Score = 66.4 bits (161), Expect = 6e-12
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
L+ +APWC + + Y A +L+G V + K + K +
Sbjct: 19 GSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG-IVPLAKVDCT-ANTNTC-NKYGVSG 75
Query: 396 FPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
+PT+ F + Y R D +++ +
Sbjct: 76 YPTLKIFRDGE-EAGAYDGP-RTADGIVSHLK 105
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 71.6 bits (175), Expect = 7e-14
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGM-GVKVGKFRADGDHKEFAKQKLQLV 394
+ + + YAPWC C+ + + +L E + + + K D E K+
Sbjct: 265 DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKM--DSTANEVEAVKVH-- 320
Query: 395 SFPTILFFPKHSAK-PVKYPSEKRDVDSLMAFVN 427
SFPT+ FFP + + + Y + +R +D F+
Sbjct: 321 SFPTLKFFPASADRTVIDY-NGERTLDGFKKFLE 353
Score = 53.2 bits (127), Expect = 6e-08
Identities = 18/161 (11%), Positives = 47/161 (29%), Gaps = 15/161 (9%)
Query: 283 GNIKQEELSQHININGNGVAQHT---NGSAPASDLFNSQKLVSFRRTGI---------EN 330
G ++ ++ +GV G + L+ F + +
Sbjct: 67 GITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQT 126
Query: 331 LARLQNREDP-WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQ 389
++ E +++ ++ AE +G + + D++ +
Sbjct: 127 APKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEF 186
Query: 390 -KLQLVSFPTI-LFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428
L+ P + L + K SE+ + + F +
Sbjct: 187 FGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHR 227
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 69.6 bits (170), Expect = 1e-13
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG--VKVGKFRADGDHKEFAKQKLQL 393
W + +A WC C A ++ LAE ++ + + + + +
Sbjct: 28 GSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNI 87
Query: 394 VSFPTILFFPKHSAKPVKY--PSEKRDVDSLMAFVN 427
FPT+ FF + P DV +L +
Sbjct: 88 PGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLI 123
Score = 47.3 bits (112), Expect = 3e-06
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 10/95 (10%)
Query: 335 QNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLV 394
+N E+ ++ + + E+A L V R + K +
Sbjct: 154 RNNEEYLALIFEXGGSYLAR-------EVALDLSQHK-GVAVRRVLNTEANVVR-KFGVT 204
Query: 395 SFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429
FP+ + + + P A++ L
Sbjct: 205 DFPSCYLLFR-NGSVSRVPVLMESRSFYTAYLQRL 238
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 68.6 bits (167), Expect = 5e-13
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 18/110 (16%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD-HKEFAKQKLQ 392
+ N L+ YAPWC C+ + ++ + A++L+G+ V+V D + +K K
Sbjct: 31 IHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLNKNKALC-AKYD 88
Query: 393 LVSFPTILFFPKHSAKPVKYPSEK---------------RDVDSLMAFVN 427
+ FPT++ F K R + ++ F
Sbjct: 89 VNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSL 138
Score = 42.4 bits (99), Expect = 2e-04
Identities = 6/87 (6%), Positives = 18/87 (20%), Gaps = 11/87 (12%)
Query: 341 WLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTIL 400
Y+ + + + E + ++
Sbjct: 188 GKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDK-----------SKLV 236
Query: 401 FFPKHSAKPVKYPSEKRDVDSLMAFVN 427
F K +Y + + + F+
Sbjct: 237 VFDADKDKFWEYEGNSINKNDISKFLR 263
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 67.3 bits (164), Expect = 6e-13
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG-VKVGKFRA----DGDH 383
++ + L+ + + + E + LAE + V + D +
Sbjct: 13 VTFYKVIPKSKFVLVKFDTQYPYGEKQDE--FKRLAENSASSDDLLVAEVGISDYGDKLN 70
Query: 384 KEFAKQ-KLQLVSFPTILFFPK-HSAKPVKYPSEKRDVDSLMAFVN 427
E +++ KL S+P F PV Y V ++ ++
Sbjct: 71 MELSEKYKLDKESYPVFYLFRDGDFENPVPYTGA-VKVGAIQRWLK 115
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 67.7 bits (164), Expect = 2e-12
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG--VKVGKFRADGDHKEFAKQKL 391
+ W + +A WC A ++ ELA ++ + + + ++
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF 85
Query: 392 QLVSFPTILFFPK--HSAKPVKYPSEKRDVDSLMAFV 426
+ FPT+ FF + P +V +L +
Sbjct: 86 NIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRL 122
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 64.0 bits (155), Expect = 2e-11
Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 35/246 (14%)
Query: 32 HHKGVEGRIESTNDHEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAED-VVLIE 90
HH ++ + L + +E+ S + I+ + +F N + +S +D V++
Sbjct: 8 HHHSSGLVPRGSHMVDKLTHLKQ-LEAES-IHIIREVAAEFDN-PVMLYSIGKDSAVMLH 64
Query: 91 YAK----LTGRPFRVFSLDTGRLNPETHQFFDTVEKHYGIR-IEYTFPNAVEVQALVRTK 145
A+ PF V +DT E ++F D + + G+ I + P+ V +
Sbjct: 65 LARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDGVA-------Q 117
Query: 146 GLFSFYEDGHQECCRIRKVRPLKRALK--GLRAWITGQRKDQSPGTRAEIPVVQIDTSFE 203
G+ F G + I K LK+AL G A G R+D+ +RA+ V S
Sbjct: 118 GINPF-THGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK-SRAKERVYSFRDSKH 175
Query: 204 GIDGGKGSLVKWN---------------PLANVKGQDIWNFLRAMNIPINSLHSQGYISI 248
D WN PL+N DIW ++ IPI L+ +
Sbjct: 176 RWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAAERDV 235
Query: 249 GCEPCT 254
+ T
Sbjct: 236 IEKNGT 241
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 63.9 bits (155), Expect = 3e-11
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFC------QAMEGSYIELAEQLEGMGVKVGKFRADGD 382
+N + + + ++ + P + E A+ LE GV G ++
Sbjct: 21 KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE-K 79
Query: 383 HKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
A +KL L +I F + + ++Y E D+L+ F+
Sbjct: 80 DAAVA-KKLGLTEEDSIYVFKED--EVIEYDGE-FSADTLVEFLL 120
Score = 36.1 bits (83), Expect = 0.016
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 326 TGIENLARLQNREDPWLIVLY--APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDH 383
G L +N ED ++ Y +A + E AE+ F A D
Sbjct: 131 EGERELQAFENIEDEIKLIGYFKNKDSEHYKA----FKEAAEEFHP----YIPFFATFDS 182
Query: 384 KEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428
K K + I F+ +PV P + + ++ FV
Sbjct: 183 KVAKKLT---LKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEE 224
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 63.6 bits (154), Expect = 3e-11
Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 12/97 (12%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLE-------GMGVKVGKFRADGDHKEFAKQK 390
+ L + Y + + + LE + A + A +K
Sbjct: 27 KYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAK-KEAKLA-KK 84
Query: 391 LQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
L ++ + +++ E D L+ F+
Sbjct: 85 LGFDEEGSLYVL--KGDRTIEFDGE-FAADVLVEFLL 118
Score = 35.0 bits (80), Expect = 0.036
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 326 TGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKE 385
+ + ED ++ + ++ E AE + KF A D
Sbjct: 129 NSKLEVQAFERIEDQIKLIGFFK--SEESEYYKAFEEAAEHFQPYI----KFFATFDKGV 182
Query: 386 FAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNA 428
K + + F+ +P+ P + + L+ FV
Sbjct: 183 AKKLS---LKMNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKE 222
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 62.3 bits (150), Expect = 1e-10
Identities = 11/101 (10%), Positives = 28/101 (27%), Gaps = 9/101 (8%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG-------VKVGKFRADGDHKEF 386
PW+++ Y C C+ ++ + A L+ +
Sbjct: 38 RVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCA-SEVDL 96
Query: 387 AKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
+K + P + FF + ++ + +
Sbjct: 97 C-RKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENS 136
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 57.2 bits (138), Expect = 1e-09
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 5/134 (3%)
Query: 293 HININGNGVAQHTNGSAPASDLFNSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHF 352
+ N Q+ + S D N + W + Y+P C
Sbjct: 69 EKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSH 128
Query: 353 CQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKY 412
C + ++ E A++++G+ +++G + + + S+P++ F S
Sbjct: 129 CHDLAPTWREFAKEVDGL-LRIG--AVNCGDDRMLCRMKGVNSYPSLFIFR--SGMAAVK 183
Query: 413 PSEKRDVDSLMAFV 426
+ R +SL+AF
Sbjct: 184 YNGDRSKESLVAFA 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 1e-09
Identities = 85/518 (16%), Positives = 133/518 (25%), Gaps = 231/518 (44%)
Query: 18 GSISSSFAVCYYGPHHKGVEGRIESTNDH---------------EDYEKLARGMESASPL 62
GS+ V T E E A E +P
Sbjct: 14 GSLEHVLLV---------------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 63 E-----------------------IMDKAFQKF------GNDI---AIAFSGAEDVVLIE 90
E +++ +F GNDI A D L++
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 91 -------YAK---LTGRPFRVFSLDTGRLNPETHQFFDTVEKH----Y------GIRIEY 130
Y + RPF F V + G +Y
Sbjct: 119 TKELIKNYITARIMAKRPFD---------KKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 131 TFPNAVEVQALVRT-----KGLFSFYEDGHQECCR----IRKVRPLKRALKGL--RAWIT 179
F E++ L +T L F + E R KV +GL W+
Sbjct: 170 -FE---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-----QGLNILEWLE 220
Query: 180 GQRKDQSPGTR--AEIPVVQIDTSFEGIDGGKGSLVKWNPLANVKG---QDIWNFLRAMN 234
+P IP+ S I G L + A + G ++ ++L+
Sbjct: 221 N--PSNTPDKDYLLSIPI-----SCPLI--GVIQLAHYVVTAKLLGFTPGELRSYLKGA- 270
Query: 235 IPINSLHSQGYIS--------------------------IGCEPCTR--PVL---PGQHE 263
+ HSQG ++ IG C P P
Sbjct: 271 ----TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSIL- 324
Query: 264 REGRWWWEDAKAKECG-----LHNGNIKQEELSQHININGNGVAQHTNGSAPASD----- 313
ED+ G L N+ QE++ ++ TN PA
Sbjct: 325 -------EDSLENNEGVPSPMLSISNLTQEQVQDYV--------NKTNSHLPAGKQVEIS 369
Query: 314 LFNSQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVK 373
L N + +V+ P + L G+ +
Sbjct: 370 LVNG------AKN----------------LVVSGP---------------PQSLYGLNLT 392
Query: 374 VGKFRA----DGDHKEFAKQKLQLV-SFPTILFFPKHS 406
+ K +A D F+++KL+ F + P HS
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-ASPFHS 429
Score = 46.2 bits (109), Expect = 2e-05
Identities = 46/275 (16%), Positives = 75/275 (27%), Gaps = 113/275 (41%)
Query: 55 GME--SASPL--EIMDKA----FQKFGNDI-----------AIAFSGAEDVVLIE-YAKL 94
GM+ S ++ ++A +G I I F G + + E Y+ +
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 95 TGRPFR--------------------VFSLDTGRLNPETHQF-----FDTVE-------K 122
F + G L+ T QF +E K
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-AT-QFTQPALT-LMEKAAFEDLK 1748
Query: 123 HYGIRI-----------EYTFPNAVEVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRAL 171
G+ EY AL + S E + V R +
Sbjct: 1749 SKGLIPADATFAGHSLGEYA--------ALASLADVMSI-ESL------VEVVF--YRGM 1791
Query: 172 KGLRAWITGQRKDQSPGTRAEIPVVQIDTSF---------EGIDGGKGSLVKWNPLAN-- 220
A + + G A P ++ SF E + G LV+ + N
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPG-RVAASFSQEALQYVVERVGKRTGWLVE---IVNYN 1847
Query: 221 VKGQ---------------DIWNFLRAMNIPINSL 240
V+ Q ++ NF++ I I L
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 35.0 bits (80), Expect = 0.055
Identities = 73/458 (15%), Positives = 134/458 (29%), Gaps = 159/458 (34%)
Query: 2 ALSSSSSAAA----ALLNGSGSISSSF---AVCY--YGPHHKGVEGRIESTNDHEDYEKL 52
AL + A+ G G+ F Y Y V I+ + + +L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL---VGDLIKFSAET--LSEL 198
Query: 53 ARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYAKLTGRP-------------F 99
R A + F + G +I + +Y L P +
Sbjct: 199 IRTTLDAEKV------FTQ-GLNILEWLENPSNTPDKDY--LLSIPISCPLIGVIQLAHY 249
Query: 100 RVFSLDTGRLNPETHQFFDTVEKHYGIRIEYTFPNAVEVQALVRTKGLF----------- 148
V + G P + ++ G A ++GL
Sbjct: 250 VVTAKLLG-FTPG--ELRSYLK---G--------------ATGHSQGLVTAVAIAETDSW 289
Query: 149 -SFYEDGHQECCRIRKVRPLKRALKGLRAWITGQR-KDQSPGTRAEIPVVQIDTSFEGID 206
SF+ +++A+ L +I G R + P T +++ + ++
Sbjct: 290 ESFFVS-------------VRKAITVL-FFI-GVRCYEAYPNTSLPPSILE-----DSLE 329
Query: 207 GGKGSLVKWNPLANVKG---QDIWNFLRAMN--IPINSLHSQGYISIGCEPCTRPVLPG- 260
+G +P+ ++ + + +++ N +P Q IS+ V+ G
Sbjct: 330 NNEGVP---SPMLSISNLTQEQVQDYVNKTNSHLPAGK---QVEISLVNGA-KNLVVSGP 382
Query: 261 --------QHEREGRWWWEDAKAKECGLHNGNIK--QEELSQHIN---INGNGVAQHTNG 307
R+ AKA GL I + +L + H++
Sbjct: 383 PQSLYGLNLTLRK-------AKAPS-GLDQSRIPFSERKLKFSNRFLPV---ASPFHSHL 431
Query: 308 SAPASDL-----------FNSQKL---VSFRRTGIENLARLQNREDP----WLIVLYAPW 349
PASDL FN++ + V G +L L +I L W
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-SDLRVLSGSISERIVDCIIRLPVKW 490
Query: 350 CHFCQAMEGSYI------------EL-AEQLEGMGVKV 374
+ ++I L +G GV+V
Sbjct: 491 -ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 50.6 bits (121), Expect = 5e-08
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQ---- 389
+++ W++ +A W + CQ+ Y +L+ + G+ GK + + + +
Sbjct: 22 ERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVG-RYTDVSTRYKVS 80
Query: 390 -KLQLVSFPTILFF 402
PT++ F
Sbjct: 81 TSPLTKQLPTLILF 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 6e-08
Identities = 61/425 (14%), Positives = 121/425 (28%), Gaps = 133/425 (31%)
Query: 32 HHKGVEGRIESTNDHEDYEKLARGMESASPLEIMDKAFQK-FG-NDIA----IAFSGAE- 84
HH ++ E+ Y+ + L + + AF F D+ S E
Sbjct: 3 HHHHMD--FETGEHQYQYKDI---------LSVFEDAFVDNFDCKDVQDMPKSILSKEEI 51
Query: 85 DVVLIEYAKLTGRPFRVFSLDTGRLNPET--HQFFDTV-EKHYG-----IRIEYTFPNAV 136
D +++ ++ R+F T E +F + V +Y I+ E P+ +
Sbjct: 52 DHIIMSKDAVS-GTLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 137 ------EVQALVRTKGLFSFYEDGHQECCRIRKVRPLKRALKGLRAWITGQRKDQSPGTR 190
+ L +F+ Y R++ L++AL LR
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYN-----VSRLQPYLKLRQALLELR--------------P 149
Query: 191 AEIPVVQIDTSFEGIDG-GKGSLVKWNPLANVKGQDIWNFLRAMNIPINSLHSQGYISIG 249
A+ ++ G+ G GK + +V M+ I ++++
Sbjct: 150 AKNVLID------GVLGSGKTWVA-----LDVC-LSY-KVQCKMDFKIF------WLNLK 190
Query: 250 CEPCTRPVLPGQHEREGRWWWEDAKAKECGLHNGNIKQEELSQHININGNGVAQHTNGSA 309
VL ++L I+ N ++ S+
Sbjct: 191 NCNSPETVL--------------------------EMLQKLLYQIDPNWT---SRSDHSS 221
Query: 310 PASDLFNSQKLVSFRRTGIENLARL-QNREDPW-LIVL---YAPWC--HF---CQAMEGS 359
+S + L RL +++ L+VL F C+ + +
Sbjct: 222 NIKLRIHSIQ---------AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 360 -YIELAEQLEGMGVKVGKFRADGDHKEFAK-QKLQLVSFPTILFFPKHSAKPVKYPSEKR 417
+ ++ + L D + L L +P P E
Sbjct: 273 RFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSL--LLKYL-----DCRPQDLPREVL 323
Query: 418 DVDSL 422
+
Sbjct: 324 TTNPR 328
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 49.4 bits (118), Expect = 1e-07
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 331 LARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG----VKVGKFRADGDHKEF 386
L + + P ++ LYA WC C+ E + + + ++ D
Sbjct: 26 LVEAKGK--PVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVAL 83
Query: 387 AKQKLQLVSFPTILFFPK 404
K L ++ PTILFF
Sbjct: 84 LK-HLNVLGLPTILFFDG 100
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 49.7 bits (118), Expect = 2e-07
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 332 ARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKL 391
A P +++++ WC C+A++ + E E E V + + + +
Sbjct: 42 AAASGL--PLMVIIHKSWCGACKALKPKFAESTEISELSHNFV-MVNLEDEEEPKDEDFS 98
Query: 392 QLVS-FPTILFF 402
P ILF
Sbjct: 99 PDGGYIPRILFL 110
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 47.3 bits (113), Expect = 4e-07
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 328 IENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFA 387
IE LA + L+ + C C M + E V+ + D +E A
Sbjct: 8 IEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQ-DMQEIA 64
Query: 388 KQKLQLVSFPTILFF 402
+ + + PT+L F
Sbjct: 65 -GRYAVFTGPTVLLF 78
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 49.3 bits (117), Expect = 6e-07
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 8/106 (7%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG----VKVGKFRADGDHK 384
E + + A C CQ E E E + +K+ + +
Sbjct: 13 ELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE 72
Query: 385 EFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNALR 430
E K + PTI+ ++Y +N +
Sbjct: 73 ETEKYGVD--RVPTIVIEGD-KDYGIRY-IGLPAGLEFTTLINGIF 114
Score = 37.3 bits (86), Expect = 0.005
Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 329 ENLARLQNREDPWLIVLY-APWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGD-HKEF 386
+ L LQ + P I ++ C +C + + A L + D +++
Sbjct: 126 KTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFA--LANDYITSKVI--DASENQDL 181
Query: 387 AKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429
A ++ Q+V P I+ + ++ + ++ + ++ A+
Sbjct: 182 A-EQFQVVGVPKIVI----NKGVAEFVG-AQPENAFLGYIMAV 218
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 47.1 bits (112), Expect = 7e-07
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 340 PWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
P +I+ C +C M+ ++++ EG + R + + K PT
Sbjct: 28 PTIIMFKTDTCPYCVEMQKELSYVSKEREGK-FNIYYARLEEEKNIDLAYKYDANIVPTT 86
Query: 400 LFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429
+F K +++ +N+L
Sbjct: 87 VFLDKE-GNKFYVHQGLMRKNNIETILNSL 115
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 47.0 bits (112), Expect = 9e-07
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 331 LARLQNREDPWLIVLYAPWCHFCQAMEGSYI----ELAEQLEGMGVKVGKFRADG-DHKE 385
LA+ R ++ ++ C +CQ M +++ ++ LE V D + +E
Sbjct: 14 LAQAHGR--MVMVYFHSEHCPYCQQMN-TFVLSDPGVSRLLEARFVVA-SVSVDTPEGQE 69
Query: 386 FAKQKLQLVSFPTILFFPK 404
A+ + ++ PT +F
Sbjct: 70 LAR-RYRVPGTPTFVFLVP 87
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 47.7 bits (113), Expect = 2e-06
Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMG--VKVGKFRAD----GDHKEFA-KQKLQLV 394
++ + + + ++ + + ++K + K+
Sbjct: 37 VVKFDIASPYGEKHEA--FTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK 94
Query: 395 SFPTILFFPKHSAKPVKYPSEK-RDVDSLMAFVN 427
+FP+I F ++ + V+ PS +D+L AFV+
Sbjct: 95 NFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVS 128
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 45.0 bits (106), Expect = 6e-06
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 338 EDPWLIVL--YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
++VL C ++ + + L M + D + Q +
Sbjct: 21 TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVD-QTAVYT-QYFDISY 77
Query: 396 FPTILFFPK 404
P+ +FF
Sbjct: 78 IPSTVFFFN 86
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 42.7 bits (101), Expect = 2e-05
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
+A WC C+ + + ++++ G V K D + + A Q++ + + PT +FF
Sbjct: 41 WATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD-EQSQIA-QEVGIRAMPTFVFF 95
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 42.9 bits (101), Expect = 3e-05
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 4/95 (4%)
Query: 335 QNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLV 394
+ + L+ EL + +V AD + E + +
Sbjct: 33 RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAV--ADLEQSEAIGDRFNVR 90
Query: 395 SFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVNAL 429
FP L F K S L+ + ++
Sbjct: 91 RFPATLVF--TDGKLRGALSGIHPWAELLTLMRSI 123
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 42.4 bits (100), Expect = 3e-05
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQL 393
+ P ++ ++ WC C+AM Y +LAE+ V K + ++K A ++L +
Sbjct: 33 KAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLA-KELGI 89
Query: 394 VSFPTILFF 402
PT
Sbjct: 90 RVVPTFKIL 98
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 42.0 bits (99), Expect = 3e-05
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 342 LIVL--YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
LIVL + W C+A++ + ++ + V AD ++ E + + ++ + P
Sbjct: 23 LIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD-ENSEIS-ELFEISAVPYF 80
Query: 400 LFF 402
+
Sbjct: 81 III 83
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 42.0 bits (99), Expect = 4e-05
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 334 LQNREDPWLIV-LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQ 392
ED W+I+ LY C + LA + K K + Q
Sbjct: 18 TNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNS-----CIQHYH 70
Query: 393 LVSFPTILFF 402
PTI +
Sbjct: 71 DNCLPTIFVY 80
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 41.5 bits (98), Expect = 4e-05
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 334 LQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQL 393
+ P ++ ++ WC +AM Y +LAE+ V K + ++K A ++L +
Sbjct: 20 KAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLA-KELGI 76
Query: 394 VSFPTILFF 402
PT
Sbjct: 77 RVVPTFKIL 85
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 40.7 bits (96), Expect = 4e-05
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 342 LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILF 401
+ V +P C +C E ++ + V K +E A + L++ P I
Sbjct: 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDIM-VDREKA-IEYGLMAVPAIAI 61
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 41.1 bits (97), Expect = 6e-05
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
+ L++ CH CQ + EL E + + K Q+ L
Sbjct: 20 DEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES-FGFYYVDVE-EEKTLF-QRFSLKG 76
Query: 396 FPTILFF 402
P IL+F
Sbjct: 77 VPQILYF 83
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 41.3 bits (97), Expect = 8e-05
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGS--YIELAEQLEGMGVKVGKFRAD-GDHKE 385
E L R + + + + WC C+ + L K + G+ E
Sbjct: 18 EALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVE 77
Query: 386 FAKQKLQLVSFPTILFFPKHSAKPVK 411
+K + ++PT+LF S + V
Sbjct: 78 LR-KKYGVHAYPTLLFI-NSSGEVVY 101
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 40.4 bits (95), Expect = 1e-04
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
E ++ + C C+ ME + + V + ++ E
Sbjct: 10 EAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSE-ARPELM- 65
Query: 389 QKLQLVSFPTILFF 402
++L PT++F
Sbjct: 66 KELGFERVPTLVFI 79
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 40.4 bits (95), Expect = 1e-04
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
E+ + + + ++ A WC C+ + + ELA++ V K D + K A
Sbjct: 17 EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVD-ELKAVA- 72
Query: 389 QKLQLVSFPTILFF 402
++ + + PT +F
Sbjct: 73 EEWNVEAMPTFIFL 86
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 40.7 bits (95), Expect = 2e-04
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 332 ARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMG----VKVGKFRADGDHKEFA 387
+ ++ P L+V A WC C+A++ S VK+ D + E +
Sbjct: 25 GKRTHK--PTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFD-RNLELS 81
Query: 388 KQ--KLQLVSFPTILFF 402
+ P ++
Sbjct: 82 QAYGDPIQDGIPAVVVV 98
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 39.9 bits (94), Expect = 2e-04
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
+A WC C+ + +EL+ Q V V K D + ++ A + + S PT +F
Sbjct: 28 FATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVD-ECEDIA-MEYNISSMPTFVFL 81
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 39.6 bits (93), Expect = 2e-04
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
LA+ + P ++ A WC C+ + + L+ G V K D A
Sbjct: 15 AQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVD-AVAAVA- 71
Query: 389 QKLQLVSFPTILFF 402
+ + + PT +
Sbjct: 72 EAAGITAMPTFHVY 85
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 40.1 bits (94), Expect = 2e-04
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
+ + +I A WC C+ M + +LA++ K D + K A
Sbjct: 25 MQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP--NAVFLKVDVD-ELKPIA- 80
Query: 389 QKLQLVSFPTILFF 402
++ + + PT LF
Sbjct: 81 EQFSVEAMPTFLFM 94
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 38.8 bits (91), Expect = 3e-04
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 340 PWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
+ + +P C C A + E+A ++ V+V ++ + A + +++ PTI
Sbjct: 4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDA-VEVEYINVM-ENPQKA-MEYGIMAVPTI 60
Query: 400 LFF 402
+
Sbjct: 61 VIN 63
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 40.2 bits (94), Expect = 3e-04
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
+ P ++ YA WC C+ + EL+++ G + + K D E A + + S P
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGK-IYIYKVNVD-KEPELA-RDFGIQSIP 107
Query: 398 TILFFPK 404
TI F P
Sbjct: 108 TIWFVPM 114
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 39.6 bits (93), Expect = 3e-04
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 334 LQNREDPWLIVL--YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKL 391
++ L+++ A WC C+ + + E A++ G K D + K+ A +
Sbjct: 22 ANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVD-ELKDVA-EAY 77
Query: 392 QLVSFPTILFF 402
+ + PT LF
Sbjct: 78 NVEAMPTFLFI 88
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 39.7 bits (93), Expect = 3e-04
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
+ ++ +A WC C +L + + + K D ++ A +K + S
Sbjct: 40 MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR-IYLLKVDLD-KNESLA-RKFSVKS 96
Query: 396 FPTILFF 402
PTI+
Sbjct: 97 LPTIILL 103
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 39.7 bits (93), Expect = 3e-04
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
+ P ++ YA WC C+ + ELA++ +G + + K + +E A + S P
Sbjct: 38 DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ-IVIYKVDTE-KEQELA-GAFGIRSIP 94
Query: 398 TILFFPK 404
+ILF P
Sbjct: 95 SILFIPM 101
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 39.4 bits (92), Expect = 3e-04
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 334 LQNREDPWLIV-LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQ 392
+D W+++ LY C + LA + K K + +
Sbjct: 25 TNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF--PETKFVKAIVNS-----CIEHYH 77
Query: 393 LVSFPTILFF 402
PTI +
Sbjct: 78 DNCLPTIFVY 87
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 39.3 bits (92), Expect = 4e-04
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
E L + + ++ A WC C+ + + +LA++L V K D + K A
Sbjct: 29 EQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTD-ELKSVA- 84
Query: 389 QKLQLVSFPTILFF 402
+ + PT +F
Sbjct: 85 SDWAIQAMPTFMFL 98
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 38.9 bits (91), Expect = 4e-04
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
+A WC C+ + + EL+E+ K D +E A +K + + PT +
Sbjct: 41 FATWCGPCKTIAPLFKELSEK---YDAIFVKVDVD-KLEETA-RKYNISAMPTFIAI 92
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 38.8 bits (90), Expect = 4e-04
Identities = 8/108 (7%), Positives = 29/108 (26%), Gaps = 5/108 (4%)
Query: 322 SFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG--MGVKVGKFRA 379
T + ++++ + C +C+ G+ + + + + +
Sbjct: 13 DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQ 72
Query: 380 DGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFVN 427
D + F + + + P + + + F
Sbjct: 73 LNDLQAFRS-RYGIPTVPGFVHI--TDGQINVRCDSSMSAQEIKDFAG 117
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 38.4 bits (90), Expect = 5e-04
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
+A WC C+ + LA+++ V+ K D ++E A K + + PT +F
Sbjct: 27 FAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVD-QNEEAA-AKYSVTAMPTFVFI 79
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 38.5 bits (90), Expect = 5e-04
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
L+ +A WC C E Y ++AE+ +G G+ D ++++ A K +++
Sbjct: 19 RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK-AVFGRLNVD-ENQKIA-DKYSVLN 75
Query: 396 FPTILFF 402
PT L F
Sbjct: 76 IPTTLIF 82
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 38.9 bits (91), Expect = 6e-04
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 339 DPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPT 398
L+ +APWC C+ + ELA G +KV K D +H A + + S PT
Sbjct: 51 PLTLVDFFAPWCGPCRLVSPILEELARDHAGR-LKVVKVNVD-EHPGLA-ARYGVRSVPT 107
Query: 399 ILFF 402
++ F
Sbjct: 108 LVLF 111
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 38.9 bits (91), Expect = 6e-04
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
+ + P +++ Y+P C +C+AME + E A++ G+ + A +K +
Sbjct: 22 DSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS-AVFGRINIA-TNPWTA-EKYGVQG 78
Query: 396 FPTILFF 402
PT FF
Sbjct: 79 TPTFKFF 85
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 38.9 bits (91), Expect = 6e-04
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
+ + + +I A WC C+ + + E A++ G K D + KE A
Sbjct: 27 AQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVD-ELKEVA- 82
Query: 389 QKLQLVSFPTILFF 402
+K + + PT LF
Sbjct: 83 EKYNVEAMPTFLFI 96
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 39.1 bits (91), Expect = 7e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
+APW C M ELA++L V K A+ E + +K ++ S PT LFF
Sbjct: 40 WAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAE-GVPEVS-EKYEISSVPTFLFF 92
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 39.0 bits (91), Expect = 7e-04
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
E L +L + P +I +APWC C++ + E A + G V+ K + +
Sbjct: 46 ETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK-VRFVKVNTE-AEPALS- 102
Query: 389 QKLQLVSFPTILFF 402
+ ++ S PTI+ +
Sbjct: 103 TRFRIRSIPTIMLY 116
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 37.7 bits (88), Expect = 8e-04
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
+ ++ +A WC C + ELAE V GK +D ++ + A + ++S
Sbjct: 14 ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP--QVGFGKLNSD-ENPDIA-ARYGVMS 69
Query: 396 FPTILFF 402
PT++FF
Sbjct: 70 LPTVIFF 76
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 38.6 bits (90), Expect = 8e-04
Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 338 EDPWLIVLYAPWCHFCQAMEGSYIELAEQLEG------MGVKVGKFRADGDHKEFAKQKL 391
+ ++ +Y+ C C I+ +++++ G +G+ + K
Sbjct: 31 QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELS-AARLEM-NKA 88
Query: 392 QLVSFPTILFF 402
+ PT++F+
Sbjct: 89 GVEGTPTLVFY 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 40.2 bits (94), Expect = 8e-04
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 340 PWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
P L ++ C + LA Q G + K D + A + L + PT+
Sbjct: 28 PVLFYFWSERSQHCLQLTPILESLAAQYNG-QFILAKLDCD-AEQMIA-AQFGLRAIPTV 84
Query: 400 LFF 402
F
Sbjct: 85 YLF 87
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 37.7 bits (88), Expect = 0.001
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
YA WC C+ M+ +L + V+ K D + + A ++ ++ + PT +
Sbjct: 38 YATWCGPCKMMQPHLTKLIQAYP--DVRFVKCDVD-ESPDIA-KECEVTAMPTFVLG 90
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 37.3 bits (87), Expect = 0.001
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 342 LIVL--YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
L+V+ A WC C+ ++ + L+E+ V + D D ++ A + ++ S PT
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVD-DCQDVA-SESEVKSMPTF 77
Query: 400 LFF 402
FF
Sbjct: 78 QFF 80
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 37.3 bits (87), Expect = 0.001
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 342 LIVL--YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
L V+ C C + ++ ++ + + + A + + PT
Sbjct: 23 LAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVH-QCQGTA-ATNNISATPTF 78
Query: 400 LFF 402
FF
Sbjct: 79 QFF 81
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 37.3 bits (87), Expect = 0.001
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
YA WC C+ + + +EQ K D + + A QK ++ + PT+L F
Sbjct: 32 YATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVD-ELGDVA-QKNEVSAMPTLLLF 84
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 37.4 bits (87), Expect = 0.002
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
A WC C+ +E ++A + VK K AD ++ E K +++ PT +
Sbjct: 45 TAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDAD-NNSEIV-SKCRVLQLPTFIIA 97
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 36.9 bits (86), Expect = 0.002
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 342 LIVL--YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
L+V+ A WC + ++ + L+E+ V + D D ++ A + ++ S PT
Sbjct: 33 LVVVDFSATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVD-DCQDVA-SECEVKSMPTF 88
Query: 400 LFF 402
FF
Sbjct: 89 QFF 91
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 37.5 bits (87), Expect = 0.002
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 329 ENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAK 388
+ L+ L A WC + + YIEL+E + D + +F+
Sbjct: 37 QKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVD-ELSDFS- 92
Query: 389 QKLQLVSFPTILFF 402
++ + PT F
Sbjct: 93 ASWEIKATPTFFFL 106
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 37.5 bits (87), Expect = 0.002
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 340 PWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTI 399
P L+ +APWC C+ M + A L G V++ K H A + ++ P
Sbjct: 66 PLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAKIDTQ-AHPAVA-GRHRIQGIPAF 122
Query: 400 LFF 402
+ F
Sbjct: 123 ILF 125
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 38.1 bits (88), Expect = 0.002
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 329 ENLARLQNREDPWLIVLY-APWCHFCQAMEGSYIELA-EQLEGMGVKVGKFRADGD-HKE 385
E ++N + I+++ P C +C + A E + K+ + + E
Sbjct: 124 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE 183
Query: 386 FAKQKLQLVSFPTILFF 402
+A + +++ P I+
Sbjct: 184 WA-DQYNVMAVPKIVIQ 199
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 37.0 bits (86), Expect = 0.003
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 14/104 (13%)
Query: 304 HTNGSAPASDLFNSQKLVSFRRTGIENLA----RLQNREDPWLIV-LYAPWCHFCQAMEG 358
H + S + F Q + ++N + ++ +++ A WC C ++
Sbjct: 5 HHHSSGRENLYFQGQSIY----IELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKE 60
Query: 359 SYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
+ V + D D + + + PT F+
Sbjct: 61 YFKNQLNYYYVTLVDI-----DVDIHPKLNDQHNIKALPTFEFY 99
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 36.6 bits (85), Expect = 0.003
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 7/116 (6%)
Query: 317 SQKLVSFRRTGIENLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGK 376
S +V F T L R++ L+ +A WC CQ + +AE + V K
Sbjct: 2 SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANK--DVTFIK 59
Query: 377 FRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKR--DVDSLMAFVNALR 430
D + A + S P + F K +K + DV + A + +
Sbjct: 60 VDVD-KNGNAA-DAYGVSSIPALFFV-KKEGNEIKTLDQFVGADVSRIKADIEKFK 112
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 36.1 bits (84), Expect = 0.004
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
L+ +A WC C+ + + E+ ++ G V V K D D+ E Q+ S
Sbjct: 18 KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK-VTVAKVNID-DNPETP-NAYQVRS 74
Query: 396 FPTILFF 402
PT++
Sbjct: 75 IPTLMLV 81
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 36.6 bits (84), Expect = 0.005
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 331 LARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQK 390
A+ + P +++ + C + QA++ + + E E K +
Sbjct: 39 YAQKSKK--PLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE-TTDKNLS 95
Query: 391 LQLVSFPTILFF 402
P I+F
Sbjct: 96 PDGQYVPRIMFV 107
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 35.8 bits (83), Expect = 0.005
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
+A WC C+ + Y E ++ + K D + E +K + S PT +
Sbjct: 34 FAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVD-EVSEVT-EKENITSMPTFKVY 86
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 35.8 bits (83), Expect = 0.005
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 336 NREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVS 395
+ P L+ +A WC C+ + S +A + +++ K D ++ A K ++S
Sbjct: 21 KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK-IEIVKLNID-ENPGTA-AKYGVMS 77
Query: 396 FPTILFF 402
PT+ +
Sbjct: 78 IPTLNVY 84
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 36.0 bits (83), Expect = 0.008
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 330 NLARLQNREDPWLIV-LYAPWCHFCQAMEG---SYIELAEQLEGMGVKVGKFRADGDHKE 385
++QN+ WL++ + CQ + S + + + + + +
Sbjct: 36 ECGQMQNK---WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQR 92
Query: 386 FAKQKLQLVSFPTILFF 402
+ Q +L FP +
Sbjct: 93 YI-QFYKLGDFPYVSIL 108
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 35.8 bits (82), Expect = 0.016
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 335 QNREDPWLIV-LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQL 393
+ ++ ++V +Y C A+ S I LA + VK K +A A +
Sbjct: 129 KEQKITTIVVHIYEDGIKGCDALNSSLICLAAEY--PMVKFCKIKASNTG---AGDRFSS 183
Query: 394 VSFPTILFF 402
PT+L +
Sbjct: 184 DVLPTLLVY 192
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 34.2 bits (78), Expect = 0.021
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 339 DPWLIVLYAPWCHFCQAMEGSYIELAEQL-EGMGVKVGKFRADGDHKEFAKQKLQLVSFP 397
+ L++ P C +C + EG V + + + + P
Sbjct: 19 ELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTP 78
Query: 398 TILFF 402
T +
Sbjct: 79 TFVLM 83
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 32.4 bits (73), Expect = 0.088
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 326 TGIENLAR-LQNREDPWLIVLYA--------PWCHFCQAMEGSYIELAEQLEG----MGV 372
+G E R ++ + + WC C E E + + +
Sbjct: 10 SGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYC 69
Query: 373 KVGKFRADGDHKEFAKQKLQLVSFPTILFF 402
+VG+ D ++ L++ + PT+L +
Sbjct: 70 QVGEKPYWKDPNNDFRKNLKVTAVPTLLKY 99
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 33.5 bits (76), Expect = 0.097
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 335 QNREDPWLIV-LYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQKLQL 393
+ ++ ++V +Y C A+ S LA + VK K RA A +
Sbjct: 116 KEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY--PMVKFCKIRAS---NTGAGDRFSS 170
Query: 394 VSFPTILFF 402
PT+L +
Sbjct: 171 DVLPTLLVY 179
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 33.7 bits (78), Expect = 0.10
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 21/87 (24%)
Query: 25 AVCYYGPH-HKGVEGRIE---------STND--HEDYEKLARGMESASPLEIMDKAFQKF 72
V G H V + ND + +LA+ + + SP K F F
Sbjct: 52 GVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVF--F 109
Query: 73 GNDIAIAFSGAEDV-VLIEYAKLTGRP 98
N SG E + I+ K TGR
Sbjct: 110 SN------SGTEAIEASIKVVKNTGRK 130
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.11
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 168 KRALKGLRAWITGQRKDQSPGTRAEIPVVQIDTSFE 203
K+ALK L+A + K + + A P + I + E
Sbjct: 19 KQALKKLQASL----KLYADDS-A--PALAIKATME 47
Score = 29.5 bits (65), Expect = 1.2
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 5/20 (25%)
Query: 329 ENLARLQNREDPWLIVLYAP 348
+ L +LQ + LYA
Sbjct: 20 QALKKLQAS-----LKLYAD 34
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 32.0 bits (72), Expect = 0.23
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Query: 330 NLARLQNREDPWLIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFAKQ 389
AR N+ P ++ C C+ ME + + + D+K +
Sbjct: 41 EYARQHNK--PVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTE 98
Query: 390 KLQLVSFPTILFFPKHSAKPVKYPSEKRDVDSLMAFV 426
++++ T K K ++ +V
Sbjct: 99 PVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYV 135
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 31.8 bits (72), Expect = 0.23
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 346 YAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFA-----------KQKLQLV 394
+ WC +C M+ ++ +E GV + D K K + ++
Sbjct: 56 GSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVT 115
Query: 395 SFPTILFF 402
FP ++F
Sbjct: 116 GFPELVFI 123
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 30.0 bits (68), Expect = 0.71
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 347 APWCHFCQA----MEGSYIELAEQLEGMGVKVGKFRADGDH---KEFAKQKLQLVSFPTI 399
+ CH C+ + + +QL + V + + D D KE A + ++ P
Sbjct: 38 SISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAE--HDITQPIF 95
Query: 400 L 400
+
Sbjct: 96 V 96
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 0.99
Identities = 24/132 (18%), Positives = 38/132 (28%), Gaps = 25/132 (18%)
Query: 88 LIEY--AKLTGRPFRV-FSLDTGRLNPET---HQFFDTVEKHYGIR-IEYTF-----PNA 135
I Y L GRP+ T + ++ ++ +H GIR IE P
Sbjct: 860 FISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEK 919
Query: 136 VEVQALVRTKGLFSFYE----------DGHQECCRIRKVRPLKRALKGLRAWITGQRKDQ 185
E+ V + +E H + I ++ L T
Sbjct: 920 KEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKA 979
Query: 186 SPGTR---AEIP 194
R +IP
Sbjct: 980 LRFDRLVAGQIP 991
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 30.2 bits (67), Expect = 1.0
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 329 ENLARLQNREDPWLIVLY-APWCHFCQAMEGSYIELA-EQLEGMGVKVGKFRADGDHKEF 386
L++ + I P C +C A E + + +
Sbjct: 128 ATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPD 187
Query: 387 AKQKLQLVSFPTILF 401
K ++S P+I
Sbjct: 188 IADKYGVMSVPSIAI 202
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 28.8 bits (64), Expect = 2.3
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 329 ENLARLQNREDPW-LIVLYAPWCHFCQAMEGSYIELAEQLEGMGVKVGKFRADGDHKEFA 387
RLQ E + L+V WC CQ + + + + G ++
Sbjct: 44 ALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIEL---AIISKGRAEDDL 100
Query: 388 KQKL--QLVSFPTILFF 402
+Q+L + ++ P +L
Sbjct: 101 RQRLALERIAIPLVLVL 117
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 29.4 bits (66), Expect = 3.2
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 72 FGNDIAI---AFSGAEDVVLI---EYAKLTGRPFRVFSLDTG---RLNPE-THQF----F 117
NDI +F ED++ + E A+ G P + ++G L E H F
Sbjct: 126 ISNDITFRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARIGLAEEIKHMFQVAWV 185
Query: 118 DTVEKHYGIRIEYTFPNAVEV 138
D + H GI+ Y P
Sbjct: 186 DPEDPHKGIKYLYLTPQDYTR 206
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 29.1 bits (65), Expect = 3.3
Identities = 5/56 (8%), Positives = 15/56 (26%)
Query: 362 ELAEQLEGMGVKVGKFRADGDHKEFAKQKLQLVSFPTILFFPKHSAKPVKYPSEKR 417
+ ++Q+E + F+ + I+ ++ R
Sbjct: 219 KFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDR 274
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 27.4 bits (61), Expect = 3.6
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
Query: 343 IVLYA-PWCHFCQAMEGSYIELAEQLEGMGVK-----VGKFRADGDHK--EFAKQKLQLV 394
+++Y C +C+ + + L +GV V + + + E ++ V
Sbjct: 24 VIMYGLSTCVWCKKTK-------KLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSV 76
Query: 395 SFPTILF 401
SFPT +
Sbjct: 77 SFPTTII 83
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 285
Score = 28.3 bits (64), Expect = 4.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 26 VCYYGPHHK--GVEGRIESTNDHEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAF--S 81
VC+ HH RIE+ +D + + +GM SA+PL+ F + I +
Sbjct: 51 VCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLD-----FPSYLEKIEKDQQKT 105
Query: 82 GAEDVVLIEYAKLTGRP 98
G ++ V+ A+L G
Sbjct: 106 GLKEAVVTGTAQLDGMK 122
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 28.3 bits (64), Expect = 5.3
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 16/58 (27%)
Query: 46 HEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYA-KL----TGRP 98
+E Y + + +P+ ++ N SG+E V E A K+ T +P
Sbjct: 103 YEGYVAVCEQLNRLTPVRGDKRSA--LFN------SGSEAV---ENAVKIARSHTHKP 149
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 27.9 bits (63), Expect = 7.8
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 16/58 (27%)
Query: 46 HEDYEKLARGMESASPLEIMDKAFQKFGNDIAIAFSGAEDVVLIEYA-KL----TGRP 98
+E Y +L M P + K +G+E V E A K+ T R
Sbjct: 83 YEPYLELCEIMNQKVPGDFAKKTL--LVT------TGSEAV---ENAVKIARAATKRS 129
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 27.5 bits (62), Expect = 9.9
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 68 AFQKFGNDIAIAFSGA 83
+Q GND+ + +
Sbjct: 357 CYQVIGNDLTVTMAAE 372
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.414
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,720,789
Number of extensions: 408479
Number of successful extensions: 1216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1144
Number of HSP's successfully gapped: 137
Length of query: 430
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 334
Effective length of database: 4,021,377
Effective search space: 1343139918
Effective search space used: 1343139918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)