BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042287
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49689|RS30_ARATH 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1
SV=3
Length = 62
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/62 (96%), Positives = 62/62 (100%)
Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
Query: 96 EK 97
EK
Sbjct: 61 EK 62
>sp|O42952|RS30_SCHPO 40S ribosomal protein S30 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps30a PE=3 SV=2
Length = 61
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 45/60 (75%)
Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95
MGKVHGSLARAGKV+ QTPKV KQ+K K+P+GRA+KR+ Y RRFV G KR N S
Sbjct: 1 MGKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPS 60
>sp|P62864|RS30_RAT 40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1
Length = 59
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
KVHGSLARAGKVRGQTPKVAKQ+KKKK GRA +RMQYNRRFV V FGKK+GPN++
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P0C2F0|RS30_PONAB 40S ribosomal protein S30 OS=Pongo abelii GN=FAU PE=3 SV=1
Length = 59
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
KVHGSLARAGKVRGQTPKVAKQ+KKKK GRA +RMQYNRRFV V FGKK+GPN++
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P62863|RS30_PIG 40S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=2 SV=1
Length = 59
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
KVHGSLARAGKVRGQTPKVAKQ+KKKK GRA +RMQYNRRFV V FGKK+GPN++
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P62867|RS30_MUSSI 40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1
Length = 59
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
KVHGSLARAGKVRGQTPKVAKQ+KKKK GRA +RMQYNRRFV V FGKK+GPN++
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P62862|RS30_MOUSE 40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=3 SV=1
Length = 59
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
KVHGSLARAGKVRGQTPKVAKQ+KKKK GRA +RMQYNRRFV V FGKK+GPN++
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P62861|RS30_HUMAN 40S ribosomal protein S30 OS=Homo sapiens GN=FAU PE=1 SV=1
Length = 59
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
KVHGSLARAGKVRGQTPKVAKQ+KKKK GRA +RMQYNRRFV V FGKK+GPN++
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P62860|RS30_CRIGR 40S ribosomal protein S30 OS=Cricetulus griseus GN=FAU PE=3 SV=1
Length = 59
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
KVHGSLARAGKVRGQTPKVAKQ+KKKK GRA +RMQYNRRFV V FGKK+GPN++
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|P62866|RS30_BOVIN 40S ribosomal protein S30 OS=Bos taurus GN=FAU PE=3 SV=1
Length = 59
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
KVHGSLARAGKVRGQTPKVAKQ+KKKK GRA +RMQYNRRFV V FGKK+GPN++
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 OS=Oryzias latipes GN=fau PE=3 SV=2
Length = 59
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 47/59 (79%)
Query: 38 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 96
KVHGSLARAGKVRGQTP V K ++K++ GRA +R+QYNRRFV V FGKK+G N++
Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59
>sp|Q556Y1|RS30_DICDI 40S ribosomal protein S30 OS=Dictyostelium discoideum GN=rps30-1
PE=3 SV=1
Length = 66
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 44/59 (74%)
Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS 94
MGKVHG L RAGKVR TPK K++K+K GRA KRM +NRR V AV GFGKK+G N+
Sbjct: 1 MGKVHGGLNRAGKVRNATPKKDKEEKRKPKVGRAKKRMIFNRRNVAAVAGFGKKKGYNT 59
>sp|O96269|RS30_PLAF7 40S ribosomal protein S30 OS=Plasmodium falciparum (isolate 3D7)
GN=RPS30 PE=3 SV=1
Length = 58
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS 94
MGKVHGSLARAGKV+ QTPKV K DKKK+ GRA KR YNRRF G+K+GPNS
Sbjct: 1 MGKVHGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSD---NGGRKKGPNS 56
>sp|P0CX34|RS30B_YEAST 40S ribosomal protein S30-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS30B PE=1 SV=1
Length = 63
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 43/55 (78%)
Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 90
M KVHGSLARAGKV+ QTPKV K +K KKP+GRA+KR+ Y RRFV + GK+R
Sbjct: 1 MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 55
>sp|P0CX33|RS30A_YEAST 40S ribosomal protein S30-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS30A PE=1 SV=1
Length = 63
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 43/55 (78%)
Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 90
M KVHGSLARAGKV+ QTPKV K +K KKP+GRA+KR+ Y RRFV + GK+R
Sbjct: 1 MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 55
>sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30 OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps30e
PE=3 SV=1
Length = 50
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRF 79
MG HGSL +AGKVR QTP++ + KK P R R++Y R
Sbjct: 1 MG-THGSLTKAGKVRKQTPRLPAKQKKNYP-PRLKNRLKYQVRI 42
>sp|Q5RAZ2|SBDS_PONAB Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1
Length = 250
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 1 TLTLDSCCLPQFGRERVSQQQQQQQRP-TRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQ 59
T+ D C P+ +RP T +L AM +H S+ + Q +V KQ
Sbjct: 113 TIVADKCVNPE------------TKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQ 160
Query: 60 DKKKKPRGRAHKRMQY 75
K+K RAH R+++
Sbjct: 161 LKEKMKIERAHMRLRF 176
>sp|Q9Y3A5|SBDS_HUMAN Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4
Length = 250
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 1 TLTLDSCCLPQFGRERVSQQQQQQQRP-TRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQ 59
T+ D C P+ +RP T +L AM +H S+ + Q +V KQ
Sbjct: 113 TIVADKCVNPE------------TKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQ 160
Query: 60 DKKKKPRGRAHKRMQY 75
K+K RAH R+++
Sbjct: 161 LKEKMKIERAHMRLRF 176
>sp|Q99463|NPY6R_HUMAN Putative neuropeptide Y receptor type 6 OS=Homo sapiens GN=NPY6R
PE=5 SV=1
Length = 290
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 57 AKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 92
AK DKKK+ GR ++ + N ++ VV FG P
Sbjct: 241 AKVDKKKENEGRLNENKRINTMLISIVVTFGACWLP 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,946,538
Number of Sequences: 539616
Number of extensions: 1175405
Number of successful extensions: 6869
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6789
Number of HSP's gapped (non-prelim): 76
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)