Query 042287
Match_columns 97
No_of_seqs 126 out of 161
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 07:48:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042287.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042287hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1we6a_ d.15.1.1 (A:) Splicing 61.5 0.58 4.3E-05 29.8 -0.7 40 2-41 72-111 (111)
2 d1ogwa_ d.15.1.1 (A:) Ubiquiti 41.7 1.5 0.00011 25.1 -1.1 35 3-37 42-76 (76)
3 d1wh3a_ d.15.1.1 (A:) 2'-5'-ol 28.4 2.5 0.00018 24.8 -1.7 39 3-41 49-87 (87)
4 d1euvb_ d.15.1.1 (B:) SUMO-1 ( 12.2 8.7 0.00063 21.9 -1.9 35 3-37 45-79 (79)
5 d1wioa4 b.1.1.3 (A:292-363) CD 9.4 45 0.0033 20.2 0.8 27 35-61 14-40 (72)
6 d2i9fa1 d.254.1.1 (A:50-105) A 8.0 80 0.0058 18.0 1.5 10 39-48 28-38 (56)
7 d1cida2 b.1.1.3 (A:106-177) CD 7.6 47 0.0035 20.2 0.3 27 35-61 16-42 (72)
8 d2vqei1 d.14.1.1 (I:2-128) Rib 7.3 62 0.0045 20.5 0.8 20 59-78 108-127 (127)
9 d1bt0a_ d.15.1.1 (A:) Rub1 {Mo 7.0 22 0.0016 19.6 -1.5 18 4-21 43-60 (73)
10 d1kala_ g.3.3.1 (A:) Kalata B1 6.3 64 0.0046 16.4 0.3 12 7-18 8-19 (29)
No 1
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=61.54 E-value=0.58 Score=29.79 Aligned_cols=40 Identities=13% Similarity=-0.031 Sum_probs=34.5
Q ss_pred cccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhh
Q 042287 2 LTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHG 41 (97)
Q Consensus 2 ~~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHG 41 (97)
.+|...|-.+.|+..+++..-..-...+|..++.+|.+||
T Consensus 72 QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG~~~~ 111 (111)
T d1we6a_ 72 QKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSGPSSG 111 (111)
T ss_dssp SEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCSSCCC
T ss_pred eEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCCCCCCC
Confidence 3566778888999999999888888899999999999887
No 2
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.65 E-value=1.5 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.032 Sum_probs=25.6
Q ss_pred ccccCCCCCCCcccchhhhhhhhhhhhHhhhhccc
Q 042287 3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMG 37 (97)
Q Consensus 3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~G 37 (97)
.|...|-++.|+..++++.-......+|..++.+|
T Consensus 42 rL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrgG 76 (76)
T d1ogwa_ 42 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_dssp EEEETTEECCTTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred EeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 45667778888888888877776666666666655
No 3
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.44 E-value=2.5 Score=24.80 Aligned_cols=39 Identities=15% Similarity=0.008 Sum_probs=28.1
Q ss_pred ccccCCCCCCCcccchhhhhhhhhhhhHhhhhcccchhh
Q 042287 3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHG 41 (97)
Q Consensus 3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~GKvHG 41 (97)
+|...|-.+.|+..+++..-..-...+|..+..+|..+|
T Consensus 49 rLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~gp~sG 87 (87)
T d1wh3a_ 49 QLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPSSG 87 (87)
T ss_dssp EEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCSCCC
T ss_pred EEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCCCCCCC
Confidence 455567777888888888777777777777777776655
No 4
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Probab=12.18 E-value=8.7 Score=21.89 Aligned_cols=35 Identities=3% Similarity=-0.091 Sum_probs=23.8
Q ss_pred ccccCCCCCCCcccchhhhhhhhhhhhHhhhhccc
Q 042287 3 TLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMG 37 (97)
Q Consensus 3 ~l~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~G 37 (97)
+|.-.|-.+.+.++++++.-..-+..+++.+..+|
T Consensus 45 ~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG 79 (79)
T d1euvb_ 45 RFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 79 (79)
T ss_dssp EEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred EEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 44556677777777888777777777666665554
No 5
>d1wioa4 b.1.1.3 (A:292-363) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.44 E-value=45 Score=20.25 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=18.4
Q ss_pred cccchhhhhhccCcccCCCcccccccc
Q 042287 35 AMGKVHGSLARAGKVRGQTPKVAKQDK 61 (97)
Q Consensus 35 ~~GKvHGSLarAGKVR~QTPKV~kqeK 61 (97)
.+|-.-=.|+-.=|..+|+-||.+|+|
T Consensus 14 VlGPtsPkl~LslklenQ~akVS~qqK 40 (72)
T d1wioa4 14 VWGPTSPKLMLSLKLENKEAKVSKREK 40 (72)
T ss_dssp EESSCCTTCCEEEECSSSSCSEEESSS
T ss_pred EeCCCCCCeEEEEEecCccceecCcee
Confidence 344443445555578899999999986
No 6
>d2i9fa1 d.254.1.1 (A:50-105) Arterivirus nucleocapsid protein {Equine arteritis virus [TaxId: 11047]}
Probab=8.04 E-value=80 Score=18.03 Aligned_cols=10 Identities=60% Similarity=0.790 Sum_probs=7.1
Q ss_pred hhhhhh-ccCc
Q 042287 39 VHGSLA-RAGK 48 (97)
Q Consensus 39 vHGSLa-rAGK 48 (97)
-||||+ -||-
T Consensus 28 ghgsltadagg 38 (56)
T d2i9fa1 28 GHGSLTADAGG 38 (56)
T ss_dssp TCSEEEECSSS
T ss_pred cccceeecCCC
Confidence 399998 5553
No 7
>d1cida2 b.1.1.3 (A:106-177) CD4 C2-set domains {Rat (Rattus rattus) [TaxId: 10117]}
Probab=7.63 E-value=47 Score=20.15 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=18.4
Q ss_pred cccchhhhhhccCcccCCCcccccccc
Q 042287 35 AMGKVHGSLARAGKVRGQTPKVAKQDK 61 (97)
Q Consensus 35 ~~GKvHGSLarAGKVR~QTPKV~kqeK 61 (97)
.+|-.-=.|+-.=|..+|+-||.+|+|
T Consensus 16 VlGPtsPkl~LsLklenQ~~kVS~qqK 42 (72)
T d1cida2 16 VMGPTSPKMRLILKQENQEARVSRQEK 42 (72)
T ss_dssp EESCCCSSEEEEEEETTSCEEEEESSS
T ss_pred EeCCCCCCeEEEEEecCccceecCcee
Confidence 344443445555578899999999986
No 8
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=7.28 E-value=62 Score=20.50 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=12.1
Q ss_pred cccccCCChhhhhhhhcccc
Q 042287 59 QDKKKKPRGRAHKRMQYNRR 78 (97)
Q Consensus 59 qeKkK~~~gRak~R~qYnrR 78 (97)
.|.||---..||++.||.+|
T Consensus 108 ~ErKK~G~~kARk~~Q~skR 127 (127)
T d2vqei1 108 VERKKYGKHKARRAPQYSKR 127 (127)
T ss_dssp CCCCCSSSSBTTBCCCCCCC
T ss_pred ccccCCCcccccccccccCC
Confidence 44444434567778888765
No 9
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.98 E-value=22 Score=19.62 Aligned_cols=18 Identities=6% Similarity=-0.154 Sum_probs=8.8
Q ss_pred cccCCCCCCCcccchhhh
Q 042287 4 LDSCCLPQFGRERVSQQQ 21 (97)
Q Consensus 4 l~s~~~~~~~~~~~s~~~ 21 (97)
|..+|-.+.|+..+++..
T Consensus 43 Li~~Gk~L~d~~tL~~y~ 60 (73)
T d1bt0a_ 43 LIYAGKQLADDKTAKDYN 60 (73)
T ss_dssp EEETTEECCTTSBTGGGT
T ss_pred EEECCeEcCCCCcHHHcC
Confidence 344455555555555443
No 10
>d1kala_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=6.27 E-value=64 Score=16.40 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=8.8
Q ss_pred CCCCCCCcccch
Q 042287 7 CCLPQFGRERVS 18 (97)
Q Consensus 7 ~~~~~~~~~~~s 18 (97)
.|+|+++|.+|-
T Consensus 8 nglpicgetcvg 19 (29)
T d1kala_ 8 NGLPVCGETCVG 19 (29)
T ss_dssp TTEECSSCCCTT
T ss_pred CCcccccccccc
Confidence 578888887653
Done!