Query 042290
Match_columns 425
No_of_seqs 323 out of 2714
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.2E-62 7E-67 506.0 34.6 400 11-424 152-571 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.6E-46 5.7E-51 350.1 17.0 277 23-306 1-284 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.1E-40 2.4E-45 362.3 30.2 364 12-409 178-567 (1153)
4 PRK04841 transcriptional regul 99.8 7E-17 1.5E-21 174.5 24.3 295 14-354 10-332 (903)
5 COG2909 MalT ATP-dependent tra 99.7 2.1E-14 4.5E-19 143.7 22.8 301 13-356 14-340 (894)
6 PRK00411 cdc6 cell division co 99.6 8.2E-14 1.8E-18 136.3 24.3 309 7-333 19-358 (394)
7 TIGR02928 orc1/cdc6 family rep 99.6 1.2E-12 2.7E-17 126.7 25.3 305 14-334 11-351 (365)
8 TIGR03015 pepcterm_ATPase puta 99.5 7.6E-13 1.6E-17 122.5 20.7 183 45-231 43-242 (269)
9 COG3899 Predicted ATPase [Gene 99.5 6.6E-13 1.4E-17 139.6 18.5 312 19-355 1-387 (849)
10 PRK00080 ruvB Holliday junctio 99.5 9.1E-13 2E-17 125.2 14.5 265 17-334 24-311 (328)
11 TIGR00635 ruvB Holliday juncti 99.5 2.3E-12 5E-17 121.5 16.4 264 18-334 4-290 (305)
12 PF01637 Arch_ATPase: Archaeal 99.4 3.1E-13 6.6E-18 122.2 8.8 195 20-227 1-234 (234)
13 PF05729 NACHT: NACHT domain 99.3 2.8E-11 6.1E-16 103.2 9.7 144 46-194 1-163 (166)
14 PTZ00112 origin recognition co 99.2 1.6E-09 3.5E-14 110.1 22.0 304 16-334 753-1087(1164)
15 PRK13342 recombination factor 99.1 5.6E-09 1.2E-13 102.4 20.0 196 18-246 12-218 (413)
16 PRK07003 DNA polymerase III su 99.1 4.7E-09 1E-13 106.1 18.8 196 18-229 16-223 (830)
17 COG2256 MGS1 ATPase related to 99.1 1E-08 2.3E-13 95.3 19.2 255 16-305 28-301 (436)
18 PRK12402 replication factor C 99.0 2.9E-08 6.4E-13 95.0 19.6 200 18-228 15-227 (337)
19 PRK14961 DNA polymerase III su 99.0 1.2E-08 2.6E-13 98.2 16.8 194 18-227 16-220 (363)
20 PRK05564 DNA polymerase III su 99.0 1.1E-08 2.4E-13 96.6 16.2 181 18-227 4-190 (313)
21 PF05496 RuvB_N: Holliday junc 99.0 2.2E-09 4.8E-14 93.3 9.6 183 18-232 24-226 (233)
22 PRK04195 replication factor C 99.0 5.5E-08 1.2E-12 97.3 20.6 248 18-306 14-271 (482)
23 PRK14960 DNA polymerase III su 99.0 6.5E-08 1.4E-12 97.0 20.7 193 18-226 15-218 (702)
24 PRK00440 rfc replication facto 99.0 6.8E-08 1.5E-12 91.7 20.1 184 18-227 17-203 (319)
25 PRK14949 DNA polymerase III su 99.0 1.4E-08 3.1E-13 104.6 16.1 184 18-227 16-220 (944)
26 PRK06893 DNA replication initi 99.0 4.7E-09 1E-13 94.4 11.3 156 45-231 39-207 (229)
27 PTZ00202 tuzin; Provisional 99.0 2.6E-07 5.7E-12 87.8 22.7 171 11-194 255-434 (550)
28 TIGR03420 DnaA_homol_Hda DnaA 99.0 6.8E-09 1.5E-13 93.4 11.5 177 18-231 15-205 (226)
29 COG3903 Predicted ATPase [Gene 98.9 1.7E-09 3.8E-14 101.0 7.4 293 44-356 13-316 (414)
30 PRK14957 DNA polymerase III su 98.9 1.5E-07 3.3E-12 93.9 21.6 185 18-228 16-222 (546)
31 PRK12323 DNA polymerase III su 98.9 1.5E-08 3.2E-13 101.3 14.3 197 18-227 16-225 (700)
32 PF13401 AAA_22: AAA domain; P 98.9 1.3E-09 2.9E-14 89.0 5.7 117 44-162 3-125 (131)
33 PRK14956 DNA polymerase III su 98.9 1.1E-08 2.4E-13 99.5 12.8 195 18-224 18-219 (484)
34 PRK09112 DNA polymerase III su 98.9 5.1E-08 1.1E-12 92.7 17.0 201 13-228 18-241 (351)
35 PRK14963 DNA polymerase III su 98.9 2.9E-09 6.3E-14 105.9 8.9 196 18-225 14-215 (504)
36 PRK07471 DNA polymerase III su 98.9 7.5E-09 1.6E-13 98.9 11.3 195 17-228 18-239 (365)
37 COG1474 CDC6 Cdc6-related prot 98.9 7E-07 1.5E-11 85.4 24.6 201 17-219 16-229 (366)
38 PLN03025 replication factor C 98.9 2.6E-08 5.7E-13 94.3 14.3 183 18-224 13-197 (319)
39 PRK06645 DNA polymerase III su 98.9 5.6E-08 1.2E-12 96.4 16.8 194 18-224 21-226 (507)
40 PRK14962 DNA polymerase III su 98.9 2.3E-07 4.9E-12 91.7 20.3 202 18-245 14-240 (472)
41 PF13191 AAA_16: AAA ATPase do 98.9 2.6E-09 5.6E-14 92.9 5.0 51 19-72 1-51 (185)
42 PF13173 AAA_14: AAA domain 98.9 6.2E-09 1.3E-13 84.7 6.8 120 46-186 3-127 (128)
43 cd00009 AAA The AAA+ (ATPases 98.8 2.7E-08 5.9E-13 82.5 10.7 124 21-163 1-130 (151)
44 PRK07994 DNA polymerase III su 98.8 7.5E-08 1.6E-12 97.6 15.6 194 18-227 16-220 (647)
45 PRK08691 DNA polymerase III su 98.8 2.1E-07 4.5E-12 94.2 18.6 195 18-228 16-221 (709)
46 PRK14951 DNA polymerase III su 98.8 5.6E-07 1.2E-11 91.2 21.3 197 18-227 16-225 (618)
47 TIGR00678 holB DNA polymerase 98.8 1.5E-07 3.3E-12 82.0 15.0 149 45-222 14-186 (188)
48 PRK07940 DNA polymerase III su 98.8 1.1E-07 2.3E-12 91.8 15.2 182 18-227 5-213 (394)
49 PRK14964 DNA polymerase III su 98.8 3.7E-07 8.1E-12 89.9 19.1 183 18-225 13-215 (491)
50 PRK14955 DNA polymerase III su 98.8 6.8E-08 1.5E-12 94.1 13.4 200 18-226 16-227 (397)
51 PRK14958 DNA polymerase III su 98.8 2.8E-07 6.1E-12 92.0 18.0 181 18-227 16-220 (509)
52 TIGR02397 dnaX_nterm DNA polym 98.8 2.9E-07 6.2E-12 88.8 16.9 185 18-228 14-219 (355)
53 PRK05896 DNA polymerase III su 98.8 1.5E-07 3.3E-12 94.2 14.5 196 18-229 16-223 (605)
54 PRK14959 DNA polymerase III su 98.8 8.4E-07 1.8E-11 89.4 19.8 198 18-231 16-225 (624)
55 PRK08903 DnaA regulatory inact 98.7 1.2E-07 2.7E-12 85.3 12.3 175 18-232 18-204 (227)
56 KOG2028 ATPase related to the 98.7 1.4E-07 2.9E-12 86.6 12.4 159 43-222 160-331 (554)
57 PRK14969 DNA polymerase III su 98.7 2E-07 4.4E-12 93.6 14.5 181 18-227 16-221 (527)
58 PRK09111 DNA polymerase III su 98.7 3.4E-07 7.3E-12 92.8 15.5 198 18-228 24-234 (598)
59 PRK07764 DNA polymerase III su 98.7 3.4E-07 7.4E-12 95.9 15.9 191 18-224 15-218 (824)
60 PRK13341 recombination factor 98.7 2.4E-07 5.2E-12 95.9 14.5 177 18-226 28-216 (725)
61 PF14516 AAA_35: AAA-like doma 98.7 6.6E-06 1.4E-10 78.2 23.0 202 16-234 9-246 (331)
62 PRK14952 DNA polymerase III su 98.7 6E-07 1.3E-11 90.6 16.3 195 18-228 13-221 (584)
63 PRK14970 DNA polymerase III su 98.7 7E-07 1.5E-11 86.5 16.0 183 18-225 17-207 (367)
64 PRK14950 DNA polymerase III su 98.7 8.2E-07 1.8E-11 90.7 16.7 196 18-228 16-222 (585)
65 PRK14954 DNA polymerase III su 98.7 7.6E-07 1.7E-11 90.5 16.1 201 18-227 16-229 (620)
66 PRK08084 DNA replication initi 98.6 5E-07 1.1E-11 81.5 13.2 155 46-231 46-213 (235)
67 PRK08727 hypothetical protein; 98.6 5.6E-07 1.2E-11 81.1 13.1 172 18-226 19-203 (233)
68 PRK09087 hypothetical protein; 98.6 9.2E-07 2E-11 79.1 14.3 145 45-231 44-199 (226)
69 TIGR02903 spore_lon_C ATP-depe 98.6 6.8E-07 1.5E-11 91.6 14.1 202 18-230 154-398 (615)
70 TIGR01242 26Sp45 26S proteasom 98.6 3.4E-07 7.3E-12 88.4 11.2 183 14-220 118-327 (364)
71 PRK07133 DNA polymerase III su 98.6 1.4E-06 3E-11 89.2 16.0 192 18-227 18-220 (725)
72 PRK14953 DNA polymerase III su 98.6 2.2E-06 4.8E-11 85.2 16.9 185 18-228 16-221 (486)
73 PRK14965 DNA polymerase III su 98.6 4.2E-06 9.2E-11 85.2 19.1 195 18-228 16-222 (576)
74 PF05621 TniB: Bacterial TniB 98.6 1.7E-06 3.7E-11 78.9 14.4 207 17-227 33-261 (302)
75 PRK06305 DNA polymerase III su 98.6 2E-06 4.4E-11 84.8 16.1 183 18-227 17-223 (451)
76 PRK08451 DNA polymerase III su 98.6 2.6E-06 5.6E-11 84.8 16.8 182 18-228 14-219 (535)
77 PRK14971 DNA polymerase III su 98.6 1.9E-06 4.2E-11 87.9 16.4 178 18-225 17-220 (614)
78 PRK05642 DNA replication initi 98.6 9.7E-07 2.1E-11 79.6 12.6 156 45-231 45-212 (234)
79 PRK07399 DNA polymerase III su 98.6 3.3E-06 7.2E-11 79.3 16.5 198 18-228 4-222 (314)
80 KOG2227 Pre-initiation complex 98.6 3.3E-06 7.1E-11 80.3 16.0 212 15-228 147-373 (529)
81 COG2255 RuvB Holliday junction 98.5 2.4E-06 5.3E-11 76.2 14.0 266 18-334 26-312 (332)
82 cd01128 rho_factor Transcripti 98.5 3.8E-07 8.3E-12 82.4 8.9 89 44-133 15-113 (249)
83 PRK14087 dnaA chromosomal repl 98.5 2.6E-06 5.7E-11 84.0 15.5 170 46-231 142-323 (450)
84 PHA02544 44 clamp loader, smal 98.5 2.8E-06 6E-11 80.6 15.2 149 18-192 21-171 (316)
85 PRK06647 DNA polymerase III su 98.5 4.4E-06 9.5E-11 84.4 16.9 194 18-227 16-220 (563)
86 TIGR03345 VI_ClpV1 type VI sec 98.5 6.3E-07 1.4E-11 95.0 11.3 182 18-220 187-389 (852)
87 PRK03992 proteasome-activating 98.5 9.1E-07 2E-11 85.9 11.6 182 15-220 128-336 (389)
88 TIGR02881 spore_V_K stage V sp 98.5 1.8E-06 3.9E-11 79.4 12.9 162 19-195 7-192 (261)
89 TIGR02639 ClpA ATP-dependent C 98.5 1.2E-06 2.6E-11 92.1 12.9 157 18-194 182-358 (731)
90 PF00308 Bac_DnaA: Bacterial d 98.5 1.8E-06 3.9E-11 76.9 12.1 165 44-230 33-211 (219)
91 KOG0989 Replication factor C, 98.5 3.1E-07 6.8E-12 82.6 6.9 185 17-221 35-224 (346)
92 PRK14948 DNA polymerase III su 98.5 5.9E-06 1.3E-10 84.5 16.5 196 18-227 16-222 (620)
93 PRK05707 DNA polymerase III su 98.5 4.2E-06 9.2E-11 79.0 14.1 159 44-227 21-203 (328)
94 PRK05563 DNA polymerase III su 98.4 8.9E-06 1.9E-10 82.5 17.3 192 18-225 16-218 (559)
95 KOG2543 Origin recognition com 98.4 6.2E-06 1.3E-10 76.6 14.2 206 17-231 5-230 (438)
96 CHL00181 cbbX CbbX; Provisiona 98.4 5.8E-06 1.3E-10 76.7 14.4 164 18-196 23-211 (287)
97 PRK09376 rho transcription ter 98.4 5.4E-07 1.2E-11 85.1 7.1 87 46-133 170-266 (416)
98 CHL00095 clpC Clp protease ATP 98.4 9.8E-07 2.1E-11 93.8 9.7 157 18-193 179-353 (821)
99 PF05673 DUF815: Protein of un 98.4 7.7E-06 1.7E-10 72.4 13.0 130 8-163 17-151 (249)
100 COG3267 ExeA Type II secretory 98.4 2.6E-05 5.6E-10 68.9 16.0 182 44-230 50-248 (269)
101 PRK06620 hypothetical protein; 98.3 1E-05 2.2E-10 71.8 12.9 140 46-229 45-191 (214)
102 TIGR02880 cbbX_cfxQ probable R 98.3 6.1E-06 1.3E-10 76.6 11.7 162 19-195 23-209 (284)
103 TIGR03346 chaperone_ClpB ATP-d 98.3 8.3E-06 1.8E-10 87.1 13.6 157 18-194 173-349 (852)
104 TIGR00362 DnaA chromosomal rep 98.3 2.6E-05 5.6E-10 76.6 15.8 164 45-228 136-311 (405)
105 PRK11034 clpA ATP-dependent Cl 98.3 5E-06 1.1E-10 86.6 11.0 157 19-194 187-362 (758)
106 PRK08769 DNA polymerase III su 98.3 3.5E-05 7.6E-10 72.2 15.4 176 26-228 12-209 (319)
107 PRK08058 DNA polymerase III su 98.3 3.1E-05 6.8E-10 73.5 15.4 163 19-193 6-181 (329)
108 PRK11331 5-methylcytosine-spec 98.2 5.7E-06 1.2E-10 80.0 9.5 120 18-148 175-298 (459)
109 TIGR00767 rho transcription te 98.2 6.5E-06 1.4E-10 78.3 9.7 88 45-133 168-265 (415)
110 PRK10865 protein disaggregatio 98.2 1.1E-05 2.5E-10 85.8 12.7 157 18-194 178-354 (857)
111 PRK06871 DNA polymerase III su 98.2 6.6E-05 1.4E-09 70.5 16.0 175 27-224 11-200 (325)
112 PRK00149 dnaA chromosomal repl 98.2 6.6E-05 1.4E-09 74.7 16.5 183 45-247 148-349 (450)
113 PRK14088 dnaA chromosomal repl 98.2 2.4E-05 5.2E-10 77.2 13.1 181 46-246 131-331 (440)
114 PF10443 RNA12: RNA12 protein; 98.2 6.8E-05 1.5E-09 71.6 15.4 200 23-238 1-289 (431)
115 PF00004 AAA: ATPase family as 98.2 4.2E-06 9.1E-11 68.1 6.3 96 48-162 1-111 (132)
116 KOG0991 Replication factor C, 98.2 2.3E-05 5E-10 68.0 10.5 109 18-146 27-136 (333)
117 COG2812 DnaX DNA polymerase II 98.1 5.1E-06 1.1E-10 81.8 6.6 189 18-222 16-215 (515)
118 PRK12422 chromosomal replicati 98.1 8.6E-05 1.9E-09 73.2 15.2 155 45-221 141-307 (445)
119 PRK06090 DNA polymerase III su 98.1 0.00013 2.9E-09 68.3 15.7 167 27-228 12-202 (319)
120 PRK14086 dnaA chromosomal repl 98.1 9E-05 2E-09 74.7 15.2 163 47-229 316-490 (617)
121 PRK07993 DNA polymerase III su 98.1 0.00012 2.6E-09 69.4 15.1 178 26-225 10-202 (334)
122 CHL00176 ftsH cell division pr 98.1 4.3E-05 9.4E-10 78.3 12.8 186 18-227 183-395 (638)
123 PF13177 DNA_pol3_delta2: DNA 98.1 3.7E-05 8.1E-10 65.1 10.1 138 22-182 1-162 (162)
124 smart00382 AAA ATPases associa 98.0 2.7E-05 6E-10 63.7 8.7 88 46-136 3-91 (148)
125 TIGR02639 ClpA ATP-dependent C 98.0 5.5E-05 1.2E-09 79.7 12.6 121 17-149 453-579 (731)
126 KOG0733 Nuclear AAA ATPase (VC 98.0 9.1E-05 2E-09 72.9 12.9 180 17-220 189-395 (802)
127 TIGR03689 pup_AAA proteasome A 98.0 5.2E-05 1.1E-09 75.3 11.5 168 18-194 182-378 (512)
128 PTZ00361 26 proteosome regulat 98.0 3.4E-05 7.3E-10 75.4 9.8 159 18-195 183-368 (438)
129 TIGR00602 rad24 checkpoint pro 98.0 4.1E-05 8.9E-10 78.0 10.6 52 17-69 83-134 (637)
130 PTZ00454 26S protease regulato 98.0 0.00015 3.2E-09 70.4 13.5 182 15-220 142-350 (398)
131 TIGR01241 FtsH_fam ATP-depende 98.0 8E-05 1.7E-09 75.0 12.1 207 17-247 54-295 (495)
132 PRK08116 hypothetical protein; 97.9 1.9E-05 4E-10 72.6 6.7 104 46-163 115-221 (268)
133 COG1373 Predicted ATPase (AAA+ 97.9 0.00012 2.6E-09 71.3 12.6 150 47-228 39-193 (398)
134 PRK13531 regulatory ATPase Rav 97.9 4.2E-05 9.1E-10 74.7 8.8 154 17-193 19-193 (498)
135 TIGR02640 gas_vesic_GvpN gas v 97.9 0.00029 6.4E-09 64.7 13.9 42 47-93 23-64 (262)
136 PRK06964 DNA polymerase III su 97.9 0.00041 8.8E-09 65.7 14.7 94 122-227 131-225 (342)
137 PRK10536 hypothetical protein; 97.8 0.00013 2.7E-09 65.6 9.8 133 17-163 54-213 (262)
138 TIGR03346 chaperone_ClpB ATP-d 97.8 9.2E-05 2E-09 79.2 10.7 136 18-162 565-717 (852)
139 COG0593 DnaA ATPase involved i 97.8 0.00035 7.6E-09 67.1 13.4 152 44-220 112-279 (408)
140 COG0470 HolB ATPase involved i 97.8 0.00022 4.8E-09 67.8 12.2 149 19-186 2-173 (325)
141 PRK08181 transposase; Validate 97.8 3.8E-05 8.1E-10 70.3 6.0 101 46-163 107-209 (269)
142 TIGR03345 VI_ClpV1 type VI sec 97.8 6.1E-05 1.3E-09 80.1 8.3 136 18-162 566-718 (852)
143 PRK10787 DNA-binding ATP-depen 97.8 5.9E-05 1.3E-09 79.4 8.1 167 17-194 321-506 (784)
144 COG0542 clpA ATP-binding subun 97.8 5.4E-05 1.2E-09 77.8 7.2 126 18-150 491-620 (786)
145 TIGR00763 lon ATP-dependent pr 97.8 0.00017 3.8E-09 76.4 11.1 166 18-194 320-505 (775)
146 KOG1514 Origin recognition com 97.8 0.00083 1.8E-08 67.4 14.9 204 17-227 395-621 (767)
147 CHL00095 clpC Clp protease ATP 97.7 0.00014 3.1E-09 77.6 9.9 136 18-162 509-661 (821)
148 PRK10865 protein disaggregatio 97.7 0.00013 2.8E-09 77.9 9.5 123 18-149 568-696 (857)
149 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00033 7.1E-09 69.7 11.7 181 18-220 228-428 (489)
150 TIGR02902 spore_lonB ATP-depen 97.7 0.00023 5E-09 72.0 10.8 169 18-195 65-277 (531)
151 PF01695 IstB_IS21: IstB-like 97.7 4.2E-05 9E-10 65.8 4.6 102 45-163 47-150 (178)
152 PRK08699 DNA polymerase III su 97.7 0.00046 1E-08 65.2 11.9 72 122-193 112-184 (325)
153 PRK04132 replication factor C 97.7 0.00093 2E-08 70.3 14.9 159 50-227 569-731 (846)
154 PF00158 Sigma54_activat: Sigm 97.7 7.5E-05 1.6E-09 63.5 5.8 133 20-163 1-144 (168)
155 PRK12608 transcription termina 97.7 0.00043 9.2E-09 65.7 11.2 100 27-132 120-229 (380)
156 COG1223 Predicted ATPase (AAA+ 97.7 0.00056 1.2E-08 60.6 10.7 180 17-220 120-318 (368)
157 PRK07952 DNA replication prote 97.6 0.00018 4E-09 64.8 8.0 103 45-162 99-204 (244)
158 COG2607 Predicted ATPase (AAA+ 97.6 0.00021 4.5E-09 62.5 7.8 117 7-149 49-166 (287)
159 PRK04296 thymidine kinase; Pro 97.6 9.1E-05 2E-09 64.5 5.6 112 46-164 3-117 (190)
160 PRK12377 putative replication 97.6 0.00026 5.6E-09 64.0 8.5 101 46-162 102-205 (248)
161 PRK06921 hypothetical protein; 97.6 0.00024 5.2E-09 65.2 8.5 38 45-83 117-154 (266)
162 COG0466 Lon ATP-dependent Lon 97.6 0.00012 2.7E-09 73.4 6.8 166 17-194 322-508 (782)
163 PRK11034 clpA ATP-dependent Cl 97.6 0.00021 4.6E-09 74.7 8.8 120 18-149 458-583 (758)
164 smart00763 AAA_PrkA PrkA AAA d 97.6 5E-05 1.1E-09 71.6 3.7 52 19-70 52-103 (361)
165 TIGR02974 phageshock_pspF psp 97.6 0.00072 1.6E-08 64.2 11.6 133 20-163 1-144 (329)
166 PRK09361 radB DNA repair and r 97.6 0.00034 7.3E-09 62.8 9.0 86 43-132 21-116 (225)
167 PRK06526 transposase; Provisio 97.6 3.7E-05 8E-10 69.9 2.8 101 46-163 99-201 (254)
168 TIGR01817 nifA Nif-specific re 97.6 0.00089 1.9E-08 68.2 13.0 136 15-163 193-341 (534)
169 TIGR01243 CDC48 AAA family ATP 97.6 0.00073 1.6E-08 71.5 12.7 183 15-221 175-381 (733)
170 COG1222 RPT1 ATP-dependent 26S 97.6 0.0024 5.2E-08 59.4 13.9 178 18-220 151-356 (406)
171 PF02562 PhoH: PhoH-like prote 97.6 0.00021 4.6E-09 62.3 6.8 131 22-163 4-156 (205)
172 TIGR01243 CDC48 AAA family ATP 97.6 0.0016 3.6E-08 68.8 14.8 187 17-227 452-664 (733)
173 PRK08939 primosomal protein Dn 97.5 0.00012 2.7E-09 68.4 5.6 122 22-162 135-260 (306)
174 PF07693 KAP_NTPase: KAP famil 97.5 0.0025 5.4E-08 60.6 14.5 46 24-72 2-47 (325)
175 PRK05022 anaerobic nitric oxid 97.5 0.00096 2.1E-08 67.4 12.2 137 16-163 185-332 (509)
176 KOG0741 AAA+-type ATPase [Post 97.5 0.0028 6.1E-08 61.7 14.4 131 43-193 536-685 (744)
177 TIGR02237 recomb_radB DNA repa 97.5 0.00043 9.3E-09 61.3 8.4 86 43-132 10-106 (209)
178 PRK15429 formate hydrogenlyase 97.5 0.0023 4.9E-08 67.3 15.1 135 18-163 376-521 (686)
179 KOG0734 AAA+-type ATPase conta 97.5 0.00063 1.4E-08 66.1 9.8 97 18-133 304-406 (752)
180 PRK07261 topology modulation p 97.5 0.00024 5.1E-09 60.8 6.4 65 47-133 2-67 (171)
181 PF14532 Sigma54_activ_2: Sigm 97.5 6.8E-05 1.5E-09 61.7 2.8 108 21-163 1-110 (138)
182 PRK08118 topology modulation p 97.5 4.5E-05 9.7E-10 64.9 1.7 34 47-80 3-37 (167)
183 PF07728 AAA_5: AAA domain (dy 97.5 3.1E-05 6.7E-10 63.8 0.6 89 48-148 2-90 (139)
184 COG0542 clpA ATP-binding subun 97.5 0.00091 2E-08 69.0 11.1 157 18-194 170-346 (786)
185 PRK09183 transposase/IS protei 97.5 0.00016 3.5E-09 66.2 5.1 101 46-163 103-206 (259)
186 PF04665 Pox_A32: Poxvirus A32 97.5 0.00021 4.6E-09 63.8 5.6 35 47-83 15-49 (241)
187 PRK07132 DNA polymerase III su 97.4 0.0048 1E-07 57.4 14.6 171 27-227 5-185 (299)
188 PRK11608 pspF phage shock prot 97.4 0.00051 1.1E-08 65.2 8.3 135 18-163 6-151 (326)
189 KOG0730 AAA+-type ATPase [Post 97.4 0.0014 3E-08 65.4 11.4 179 18-220 434-636 (693)
190 KOG0735 AAA+-type ATPase [Post 97.4 0.0019 4.1E-08 65.0 12.0 186 18-228 408-617 (952)
191 cd01393 recA_like RecA is a b 97.4 0.0013 2.9E-08 58.9 10.2 90 43-133 17-124 (226)
192 KOG1969 DNA replication checkp 97.4 0.0004 8.7E-09 69.9 7.2 85 42-145 323-409 (877)
193 cd01394 radB RadB. The archaea 97.4 0.00093 2E-08 59.6 9.0 44 43-88 17-60 (218)
194 PF03215 Rad17: Rad17 cell cyc 97.4 0.0015 3.2E-08 65.5 11.2 64 14-82 15-78 (519)
195 KOG0731 AAA+-type ATPase conta 97.4 0.0021 4.5E-08 66.1 12.3 185 17-224 310-521 (774)
196 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00081 1.7E-08 60.7 8.5 50 43-92 17-70 (235)
197 PRK06835 DNA replication prote 97.4 0.00073 1.6E-08 63.8 8.2 103 46-163 184-289 (329)
198 KOG2228 Origin recognition com 97.3 0.0019 4.1E-08 59.5 10.3 172 18-194 24-219 (408)
199 PTZ00494 tuzin-like protein; P 97.3 0.03 6.6E-07 54.0 18.5 172 11-194 364-544 (664)
200 COG1484 DnaC DNA replication p 97.3 0.001 2.3E-08 60.5 8.3 81 45-141 105-185 (254)
201 PF13207 AAA_17: AAA domain; P 97.3 0.00017 3.8E-09 57.7 2.8 22 47-68 1-22 (121)
202 KOG0744 AAA+-type ATPase [Post 97.3 0.00067 1.4E-08 62.0 6.6 79 45-132 177-259 (423)
203 COG2884 FtsE Predicted ATPase 97.2 0.0025 5.4E-08 54.0 9.0 126 44-172 27-206 (223)
204 PLN00020 ribulose bisphosphate 97.2 0.00074 1.6E-08 63.6 6.6 28 42-69 145-172 (413)
205 KOG1051 Chaperone HSP104 and r 97.2 0.0017 3.6E-08 68.1 9.7 122 18-149 562-686 (898)
206 PF00448 SRP54: SRP54-type pro 97.2 0.0012 2.6E-08 57.6 7.4 86 45-132 1-92 (196)
207 PRK06696 uridine kinase; Valid 97.2 0.0004 8.6E-09 62.2 4.5 45 22-69 2-46 (223)
208 cd03214 ABC_Iron-Siderophores_ 97.2 0.0023 5E-08 55.2 9.0 119 45-166 25-161 (180)
209 cd01120 RecA-like_NTPases RecA 97.1 0.0024 5.2E-08 53.7 8.4 40 47-88 1-40 (165)
210 cd00983 recA RecA is a bacter 97.1 0.0013 2.8E-08 61.7 7.2 83 43-132 53-142 (325)
211 PHA02244 ATPase-like protein 97.1 0.0027 5.8E-08 60.2 9.2 44 17-68 95-142 (383)
212 PRK15455 PrkA family serine pr 97.1 0.00028 6E-09 70.1 2.6 50 19-68 77-126 (644)
213 KOG2035 Replication factor C, 97.1 0.0039 8.4E-08 55.9 9.5 182 20-222 15-223 (351)
214 PRK06067 flagellar accessory p 97.1 0.0027 5.8E-08 57.4 8.8 115 43-162 23-164 (234)
215 TIGR02329 propionate_PrpR prop 97.1 0.0056 1.2E-07 61.7 11.8 132 18-163 212-358 (526)
216 TIGR01650 PD_CobS cobaltochela 97.1 0.0043 9.4E-08 58.0 9.9 70 8-91 36-105 (327)
217 PRK09354 recA recombinase A; P 97.1 0.0019 4.1E-08 61.1 7.6 96 27-132 45-147 (349)
218 PRK05541 adenylylsulfate kinas 97.0 0.00088 1.9E-08 57.6 4.9 36 44-81 6-41 (176)
219 PRK11388 DNA-binding transcrip 97.0 0.0083 1.8E-07 62.6 13.0 132 18-163 325-467 (638)
220 TIGR02012 tigrfam_recA protein 97.0 0.0019 4.1E-08 60.5 7.3 83 43-132 53-142 (321)
221 PF13604 AAA_30: AAA domain; P 97.0 0.0037 8E-08 54.7 8.6 104 46-163 19-131 (196)
222 COG4608 AppF ABC-type oligopep 97.0 0.0043 9.4E-08 55.8 8.8 125 44-172 38-179 (268)
223 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0034 7.3E-08 52.0 7.7 103 46-166 27-130 (144)
224 COG1066 Sms Predicted ATP-depe 97.0 0.0018 3.9E-08 61.3 6.6 94 27-133 79-178 (456)
225 PRK15424 propionate catabolism 97.0 0.0085 1.8E-07 60.4 11.8 47 18-68 219-265 (538)
226 KOG0733 Nuclear AAA ATPase (VC 97.0 0.018 3.8E-07 57.4 13.4 132 45-195 545-693 (802)
227 PRK10867 signal recognition pa 97.0 0.0058 1.2E-07 59.8 10.2 41 28-68 80-123 (433)
228 cd03216 ABC_Carb_Monos_I This 97.0 0.0021 4.5E-08 54.5 6.3 114 46-165 27-144 (163)
229 PF08423 Rad51: Rad51; InterP 96.9 0.0021 4.5E-08 58.7 6.7 56 44-100 37-96 (256)
230 TIGR00959 ffh signal recogniti 96.9 0.0058 1.3E-07 59.8 10.1 42 27-68 78-122 (428)
231 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0053 1.2E-07 56.0 9.1 86 45-132 69-172 (274)
232 TIGR03499 FlhF flagellar biosy 96.9 0.0036 7.7E-08 58.1 8.2 87 44-132 193-281 (282)
233 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0085 1.9E-07 50.9 9.8 116 45-166 27-151 (166)
234 PRK11889 flhF flagellar biosyn 96.9 0.011 2.5E-07 56.5 11.4 102 44-148 240-347 (436)
235 cd03247 ABCC_cytochrome_bd The 96.9 0.0057 1.2E-07 52.6 8.8 116 46-167 29-161 (178)
236 KOG2004 Mitochondrial ATP-depe 96.9 0.0012 2.7E-08 66.4 5.1 166 17-194 410-596 (906)
237 cd01131 PilT Pilus retraction 96.9 0.0021 4.6E-08 56.4 6.0 111 46-166 2-112 (198)
238 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.002 4.3E-08 53.8 5.5 115 46-163 3-138 (159)
239 PRK00771 signal recognition pa 96.9 0.0062 1.3E-07 59.7 9.6 57 43-101 93-150 (437)
240 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0072 1.6E-07 54.6 9.5 49 43-95 19-67 (237)
241 PRK05917 DNA polymerase III su 96.9 0.028 6E-07 51.9 13.2 132 27-181 6-154 (290)
242 PRK07276 DNA polymerase III su 96.8 0.056 1.2E-06 50.1 15.0 70 122-192 103-173 (290)
243 PRK14974 cell division protein 96.8 0.0088 1.9E-07 56.6 9.9 99 43-144 138-245 (336)
244 cd01121 Sms Sms (bacterial rad 96.8 0.0024 5.2E-08 61.4 6.3 95 27-133 68-168 (372)
245 COG1618 Predicted nucleotide k 96.8 0.00091 2E-08 55.0 2.8 26 45-70 5-30 (179)
246 cd03238 ABC_UvrA The excision 96.8 0.007 1.5E-07 51.8 8.5 113 45-167 21-153 (176)
247 PF07724 AAA_2: AAA domain (Cd 96.8 0.0006 1.3E-08 58.1 1.9 44 44-88 2-45 (171)
248 TIGR02236 recomb_radA DNA repa 96.8 0.006 1.3E-07 57.6 8.8 56 44-100 94-153 (310)
249 PRK07667 uridine kinase; Provi 96.8 0.0018 3.8E-08 56.6 4.6 39 27-69 3-41 (193)
250 KOG0735 AAA+-type ATPase [Post 96.8 0.019 4.1E-07 58.1 12.0 180 18-221 667-870 (952)
251 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.0049 1.1E-07 55.4 7.3 117 46-164 31-200 (254)
252 PRK10820 DNA-binding transcrip 96.8 0.003 6.5E-08 63.9 6.8 136 17-163 203-349 (520)
253 TIGR02238 recomb_DMC1 meiotic 96.8 0.005 1.1E-07 57.8 7.7 58 43-101 94-155 (313)
254 PRK05973 replicative DNA helic 96.8 0.015 3.2E-07 52.2 10.4 113 44-163 63-193 (237)
255 PRK04301 radA DNA repair and r 96.8 0.0063 1.4E-07 57.6 8.5 57 44-101 101-161 (317)
256 KOG0743 AAA+-type ATPase [Post 96.7 0.032 6.9E-07 53.8 12.8 151 46-230 236-412 (457)
257 COG0468 RecA RecA/RadA recombi 96.7 0.011 2.3E-07 54.3 9.3 87 43-132 58-150 (279)
258 PLN03187 meiotic recombination 96.7 0.005 1.1E-07 58.4 7.4 58 43-101 124-185 (344)
259 cd03222 ABC_RNaseL_inhibitor T 96.7 0.01 2.3E-07 50.8 8.8 102 46-167 26-136 (177)
260 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0033 7.1E-08 54.3 5.8 22 47-68 1-22 (183)
261 COG0464 SpoVK ATPases of the A 96.7 0.013 2.8E-07 59.2 10.9 134 43-195 274-424 (494)
262 PF13238 AAA_18: AAA domain; P 96.7 0.0011 2.3E-08 53.5 2.5 21 48-68 1-21 (129)
263 cd03115 SRP The signal recogni 96.7 0.0077 1.7E-07 51.5 7.9 23 47-69 2-24 (173)
264 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0078 1.7E-07 56.7 8.5 58 43-101 94-155 (316)
265 KOG0736 Peroxisome assembly fa 96.7 0.0083 1.8E-07 61.1 8.9 101 15-134 669-775 (953)
266 KOG0739 AAA+-type ATPase [Post 96.7 0.035 7.6E-07 50.5 11.8 95 19-133 134-235 (439)
267 COG1124 DppF ABC-type dipeptid 96.7 0.014 3.1E-07 51.5 9.3 23 45-67 33-55 (252)
268 PF08298 AAA_PrkA: PrkA AAA do 96.7 0.0023 5E-08 60.0 4.6 52 17-68 60-111 (358)
269 PRK05703 flhF flagellar biosyn 96.6 0.017 3.6E-07 56.8 10.6 86 45-132 221-308 (424)
270 COG0572 Udk Uridine kinase [Nu 96.6 0.0043 9.4E-08 54.2 5.8 76 44-124 7-85 (218)
271 COG1136 SalX ABC-type antimicr 96.6 0.017 3.6E-07 51.2 9.4 61 110-170 147-210 (226)
272 PF10236 DAP3: Mitochondrial r 96.6 0.053 1.2E-06 51.0 13.5 49 175-224 258-306 (309)
273 PRK12723 flagellar biosynthesi 96.6 0.028 6E-07 54.4 11.7 88 43-133 172-264 (388)
274 PTZ00301 uridine kinase; Provi 96.6 0.0033 7.1E-08 55.5 5.0 24 45-68 3-26 (210)
275 PRK05439 pantothenate kinase; 96.6 0.013 2.7E-07 54.8 9.1 82 42-124 83-166 (311)
276 PRK04328 hypothetical protein; 96.6 0.0097 2.1E-07 54.2 8.2 41 44-86 22-62 (249)
277 TIGR00064 ftsY signal recognit 96.6 0.013 2.9E-07 54.0 9.1 87 43-132 70-163 (272)
278 PF13671 AAA_33: AAA domain; P 96.6 0.0017 3.8E-08 53.5 3.0 21 47-67 1-21 (143)
279 PLN03186 DNA repair protein RA 96.6 0.017 3.7E-07 54.9 10.0 58 43-101 121-182 (342)
280 cd03230 ABC_DR_subfamily_A Thi 96.6 0.013 2.9E-07 50.1 8.5 117 45-167 26-159 (173)
281 cd03246 ABCC_Protease_Secretio 96.6 0.0086 1.9E-07 51.2 7.4 115 46-167 29-160 (173)
282 PRK12724 flagellar biosynthesi 96.6 0.0091 2E-07 57.7 8.1 25 44-68 222-246 (432)
283 PRK14722 flhF flagellar biosyn 96.6 0.0073 1.6E-07 57.9 7.4 87 44-132 136-224 (374)
284 PRK08533 flagellar accessory p 96.6 0.012 2.6E-07 52.9 8.5 49 44-96 23-71 (230)
285 cd03229 ABC_Class3 This class 96.5 0.0056 1.2E-07 52.7 6.1 118 46-166 27-164 (178)
286 KOG0728 26S proteasome regulat 96.5 0.09 2E-06 46.6 13.3 156 20-194 148-331 (404)
287 PRK08233 hypothetical protein; 96.5 0.002 4.2E-08 55.6 3.1 25 45-69 3-27 (182)
288 cd01122 GP4d_helicase GP4d_hel 96.5 0.027 5.8E-07 52.0 10.9 54 44-100 29-82 (271)
289 PRK10733 hflB ATP-dependent me 96.5 0.028 6E-07 58.5 12.0 159 18-195 152-336 (644)
290 COG0563 Adk Adenylate kinase a 96.5 0.0034 7.4E-08 53.8 4.4 22 47-68 2-23 (178)
291 PRK05480 uridine/cytidine kina 96.5 0.0021 4.6E-08 56.9 3.3 27 43-69 4-30 (209)
292 COG0465 HflB ATP-dependent Zn 96.5 0.04 8.6E-07 55.7 12.3 184 15-222 147-356 (596)
293 cd03228 ABCC_MRP_Like The MRP 96.5 0.012 2.5E-07 50.3 7.6 116 45-167 28-159 (171)
294 PRK09270 nucleoside triphospha 96.5 0.0091 2E-07 53.7 7.3 27 43-69 31-57 (229)
295 PF03308 ArgK: ArgK protein; 96.5 0.0035 7.5E-08 56.2 4.3 63 26-92 14-76 (266)
296 COG1875 NYN ribonuclease and A 96.5 0.0085 1.8E-07 56.0 7.0 133 21-163 227-388 (436)
297 PF12775 AAA_7: P-loop contain 96.5 0.002 4.4E-08 59.3 3.1 23 46-68 34-56 (272)
298 PF07726 AAA_3: ATPase family 96.5 0.0016 3.4E-08 51.9 1.9 27 48-76 2-28 (131)
299 PF01583 APS_kinase: Adenylyls 96.5 0.0031 6.8E-08 52.5 3.8 36 45-82 2-37 (156)
300 COG0714 MoxR-like ATPases [Gen 96.5 0.0065 1.4E-07 57.9 6.5 109 17-147 23-136 (329)
301 PF00485 PRK: Phosphoribulokin 96.5 0.002 4.3E-08 56.3 2.8 79 47-127 1-87 (194)
302 cd02019 NK Nucleoside/nucleoti 96.5 0.0019 4.1E-08 46.0 2.1 22 47-68 1-22 (69)
303 cd02025 PanK Pantothenate kina 96.5 0.011 2.4E-07 52.7 7.5 23 47-69 1-23 (220)
304 TIGR01818 ntrC nitrogen regula 96.4 0.016 3.4E-07 58.1 9.5 135 18-163 134-279 (463)
305 cd01125 repA Hexameric Replica 96.4 0.017 3.7E-07 52.3 8.8 22 47-68 3-24 (239)
306 PRK06762 hypothetical protein; 96.4 0.0023 5E-08 54.3 2.9 24 45-68 2-25 (166)
307 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0041 8.8E-08 50.3 4.0 42 25-70 6-47 (133)
308 PTZ00035 Rad51 protein; Provis 96.4 0.038 8.2E-07 52.6 11.2 69 28-101 105-177 (337)
309 COG1116 TauB ABC-type nitrate/ 96.4 0.0073 1.6E-07 53.7 5.7 23 45-67 29-51 (248)
310 PRK11823 DNA repair protein Ra 96.4 0.0064 1.4E-07 60.2 6.1 95 27-133 66-166 (446)
311 COG0194 Gmk Guanylate kinase [ 96.4 0.03 6.4E-07 47.6 9.1 24 45-68 4-27 (191)
312 PF00910 RNA_helicase: RNA hel 96.4 0.0019 4.2E-08 50.4 1.9 22 48-69 1-22 (107)
313 KOG3347 Predicted nucleotide k 96.3 0.0037 8E-08 50.7 3.4 70 45-123 7-76 (176)
314 PRK12727 flagellar biosynthesi 96.3 0.018 4E-07 57.2 8.9 87 44-132 349-437 (559)
315 TIGR00554 panK_bact pantothena 96.3 0.019 4E-07 53.3 8.5 25 43-67 60-84 (290)
316 PRK14723 flhF flagellar biosyn 96.3 0.061 1.3E-06 56.2 12.9 25 45-69 185-209 (767)
317 TIGR02858 spore_III_AA stage I 96.3 0.057 1.2E-06 49.6 11.5 114 44-167 110-233 (270)
318 TIGR00708 cobA cob(I)alamin ad 96.3 0.012 2.6E-07 49.8 6.5 116 45-163 5-140 (173)
319 TIGR00235 udk uridine kinase. 96.3 0.0035 7.7E-08 55.4 3.5 25 44-68 5-29 (207)
320 PRK06547 hypothetical protein; 96.3 0.0034 7.3E-08 53.6 3.2 26 43-68 13-38 (172)
321 COG1120 FepC ABC-type cobalami 96.3 0.026 5.6E-07 51.0 8.9 24 44-67 27-50 (258)
322 PRK10923 glnG nitrogen regulat 96.3 0.0092 2E-07 59.9 6.8 135 18-163 138-283 (469)
323 cd04159 Arl10_like Arl10-like 96.3 0.055 1.2E-06 44.8 10.6 21 48-68 2-22 (159)
324 TIGR00416 sms DNA repair prote 96.3 0.0075 1.6E-07 59.8 5.9 95 27-133 80-180 (454)
325 TIGR01420 pilT_fam pilus retra 96.3 0.014 3E-07 55.8 7.6 108 46-163 123-230 (343)
326 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.037 8E-07 49.7 10.0 41 44-86 19-59 (229)
327 COG1703 ArgK Putative periplas 96.3 0.0056 1.2E-07 55.7 4.4 65 28-96 38-102 (323)
328 TIGR00764 lon_rel lon-related 96.2 0.012 2.6E-07 60.5 7.4 74 18-101 18-91 (608)
329 TIGR00390 hslU ATP-dependent p 96.2 0.013 2.7E-07 56.6 7.0 53 17-69 11-71 (441)
330 PRK12726 flagellar biosynthesi 96.2 0.047 1E-06 52.2 10.6 88 43-132 204-294 (407)
331 PF03193 DUF258: Protein of un 96.2 0.0068 1.5E-07 50.7 4.5 37 24-69 23-59 (161)
332 TIGR01425 SRP54_euk signal rec 96.2 0.035 7.7E-07 54.1 10.0 27 43-69 98-124 (429)
333 PF00154 RecA: recA bacterial 96.2 0.008 1.7E-07 56.2 5.4 95 28-132 39-140 (322)
334 KOG0738 AAA+-type ATPase [Post 96.2 0.034 7.4E-07 52.4 9.3 51 18-68 212-268 (491)
335 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0038 8.3E-08 54.1 3.0 25 44-68 2-26 (188)
336 PHA00729 NTP-binding motif con 96.2 0.0043 9.3E-08 54.9 3.2 25 44-68 16-40 (226)
337 PRK09544 znuC high-affinity zi 96.2 0.035 7.7E-07 50.6 9.3 24 45-68 30-53 (251)
338 COG1428 Deoxynucleoside kinase 96.1 0.0036 7.8E-08 54.1 2.6 26 45-70 4-29 (216)
339 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.017 3.7E-07 48.5 6.7 118 46-168 26-145 (157)
340 cd03237 ABC_RNaseL_inhibitor_d 96.1 0.044 9.5E-07 49.8 9.8 25 45-69 25-49 (246)
341 PF06309 Torsin: Torsin; Inte 96.1 0.0062 1.3E-07 48.4 3.6 51 18-68 25-76 (127)
342 PRK13765 ATP-dependent proteas 96.1 0.0073 1.6E-07 62.1 5.1 74 18-101 31-104 (637)
343 cd01135 V_A-ATPase_B V/A-type 96.1 0.043 9.3E-07 50.1 9.4 87 46-132 70-175 (276)
344 PRK05201 hslU ATP-dependent pr 96.1 0.014 3.1E-07 56.3 6.6 52 17-68 14-73 (443)
345 PRK15453 phosphoribulokinase; 96.1 0.028 6E-07 51.4 8.1 77 44-122 4-89 (290)
346 PRK10463 hydrogenase nickel in 96.1 0.032 6.9E-07 51.4 8.5 84 43-132 102-193 (290)
347 PRK00131 aroK shikimate kinase 96.1 0.0042 9E-08 53.1 2.7 24 45-68 4-27 (175)
348 PRK03839 putative kinase; Prov 96.1 0.0041 8.8E-08 53.6 2.6 23 47-69 2-24 (180)
349 PRK04040 adenylate kinase; Pro 96.1 0.0046 9.9E-08 53.7 2.9 23 46-68 3-25 (188)
350 PF00006 ATP-synt_ab: ATP synt 96.1 0.022 4.8E-07 50.3 7.3 81 46-132 16-114 (215)
351 cd01129 PulE-GspE PulE/GspE Th 96.1 0.017 3.7E-07 53.0 6.8 80 46-134 81-160 (264)
352 PTZ00088 adenylate kinase 1; P 96.1 0.0048 1E-07 55.3 3.1 22 47-68 8-29 (229)
353 COG4240 Predicted kinase [Gene 96.0 0.019 4.1E-07 50.1 6.4 82 43-125 48-135 (300)
354 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.0059 1.3E-07 54.2 3.5 23 45-67 29-51 (213)
355 KOG0652 26S proteasome regulat 96.0 0.2 4.4E-06 44.8 12.8 50 18-67 171-227 (424)
356 PF01078 Mg_chelatase: Magnesi 96.0 0.011 2.3E-07 51.5 4.8 42 18-67 3-44 (206)
357 COG0467 RAD55 RecA-superfamily 96.0 0.0088 1.9E-07 54.9 4.6 42 43-86 21-62 (260)
358 CHL00206 ycf2 Ycf2; Provisiona 96.0 0.059 1.3E-06 60.9 11.4 26 44-69 1629-1654(2281)
359 TIGR02868 CydC thiol reductant 96.0 0.027 5.8E-07 57.5 8.6 25 44-68 360-384 (529)
360 PRK08972 fliI flagellum-specif 96.0 0.039 8.5E-07 53.8 9.1 84 45-132 162-261 (444)
361 COG1936 Predicted nucleotide k 96.0 0.0046 9.9E-08 51.6 2.4 20 47-66 2-21 (180)
362 PLN02348 phosphoribulokinase 96.0 0.031 6.7E-07 53.6 8.2 27 43-69 47-73 (395)
363 PRK09280 F0F1 ATP synthase sub 96.0 0.032 6.9E-07 54.8 8.5 87 45-132 144-247 (463)
364 TIGR02915 PEP_resp_reg putativ 96.0 0.015 3.3E-07 57.9 6.5 133 18-163 139-284 (445)
365 cd00227 CPT Chloramphenicol (C 96.0 0.0051 1.1E-07 52.8 2.7 23 46-68 3-25 (175)
366 PF03266 NTPase_1: NTPase; In 95.9 0.0046 1E-07 52.5 2.3 22 48-69 2-23 (168)
367 PRK00279 adk adenylate kinase; 95.9 0.018 3.8E-07 51.2 6.1 22 47-68 2-23 (215)
368 PF13481 AAA_25: AAA domain; P 95.9 0.014 3E-07 50.8 5.4 41 46-86 33-81 (193)
369 cd02021 GntK Gluconate kinase 95.9 0.0048 1E-07 51.4 2.3 22 47-68 1-22 (150)
370 KOG1532 GTPase XAB1, interacts 95.9 0.0064 1.4E-07 54.4 3.1 32 42-73 16-47 (366)
371 TIGR02322 phosphon_PhnN phosph 95.9 0.0055 1.2E-07 52.7 2.7 23 46-68 2-24 (179)
372 TIGR01069 mutS2 MutS2 family p 95.9 0.0075 1.6E-07 63.7 4.2 25 44-68 321-345 (771)
373 PRK06002 fliI flagellum-specif 95.9 0.045 9.8E-07 53.6 9.2 85 45-132 165-263 (450)
374 PRK10416 signal recognition pa 95.9 0.05 1.1E-06 51.3 9.2 28 43-70 112-139 (318)
375 PHA02774 E1; Provisional 95.9 0.035 7.6E-07 55.6 8.4 50 27-85 421-470 (613)
376 cd03217 ABC_FeS_Assembly ABC-t 95.9 0.029 6.4E-07 49.2 7.3 120 45-167 26-168 (200)
377 KOG0729 26S proteasome regulat 95.9 0.036 7.7E-07 49.6 7.5 50 19-68 178-234 (435)
378 COG4618 ArpD ABC-type protease 95.9 0.026 5.7E-07 55.1 7.3 22 46-67 363-384 (580)
379 COG1102 Cmk Cytidylate kinase 95.8 0.0048 1E-07 50.9 1.9 42 47-101 2-43 (179)
380 PF13086 AAA_11: AAA domain; P 95.8 0.013 2.7E-07 52.6 4.9 22 47-68 19-40 (236)
381 PRK10751 molybdopterin-guanine 95.8 0.0093 2E-07 50.7 3.7 28 43-70 4-31 (173)
382 PRK00625 shikimate kinase; Pro 95.8 0.0056 1.2E-07 52.3 2.4 22 47-68 2-23 (173)
383 PRK12597 F0F1 ATP synthase sub 95.8 0.038 8.3E-07 54.4 8.4 87 45-132 143-246 (461)
384 PRK00889 adenylylsulfate kinas 95.8 0.0076 1.6E-07 51.7 3.2 26 44-69 3-28 (175)
385 PF00625 Guanylate_kin: Guanyl 95.8 0.0073 1.6E-07 52.2 3.1 37 45-83 2-38 (183)
386 cd03232 ABC_PDR_domain2 The pl 95.8 0.034 7.4E-07 48.4 7.4 23 45-67 33-55 (192)
387 PTZ00185 ATPase alpha subunit; 95.8 0.061 1.3E-06 53.2 9.6 86 45-132 189-298 (574)
388 TIGR03498 FliI_clade3 flagella 95.8 0.042 9E-07 53.6 8.5 85 44-132 139-239 (418)
389 TIGR03575 selen_PSTK_euk L-ser 95.8 0.021 4.6E-07 54.0 6.2 22 48-69 2-23 (340)
390 cd00544 CobU Adenosylcobinamid 95.8 0.027 6E-07 47.8 6.4 77 48-132 2-82 (169)
391 COG3640 CooC CO dehydrogenase 95.8 0.012 2.6E-07 51.7 4.2 43 47-90 2-44 (255)
392 PRK07594 type III secretion sy 95.8 0.052 1.1E-06 53.0 9.1 85 44-132 154-254 (433)
393 TIGR02655 circ_KaiC circadian 95.8 0.032 7E-07 56.0 7.9 61 27-95 249-309 (484)
394 cd02023 UMPK Uridine monophosp 95.8 0.0054 1.2E-07 53.8 2.1 22 47-68 1-22 (198)
395 TIGR03263 guanyl_kin guanylate 95.8 0.0072 1.6E-07 52.0 2.8 23 46-68 2-24 (180)
396 PRK08927 fliI flagellum-specif 95.8 0.058 1.3E-06 52.8 9.2 85 44-132 157-257 (442)
397 PRK14737 gmk guanylate kinase; 95.8 0.0094 2E-07 51.6 3.5 25 44-68 3-27 (186)
398 cd02024 NRK1 Nicotinamide ribo 95.7 0.0058 1.2E-07 52.8 2.1 22 47-68 1-22 (187)
399 PF08477 Miro: Miro-like prote 95.7 0.0075 1.6E-07 47.8 2.6 22 48-69 2-23 (119)
400 PRK14721 flhF flagellar biosyn 95.7 0.055 1.2E-06 52.8 9.0 25 44-68 190-214 (420)
401 cd01124 KaiC KaiC is a circadi 95.7 0.0092 2E-07 51.6 3.4 36 48-85 2-37 (187)
402 cd02020 CMPK Cytidine monophos 95.7 0.0061 1.3E-07 50.4 2.1 22 47-68 1-22 (147)
403 PRK12339 2-phosphoglycerate ki 95.7 0.0084 1.8E-07 52.4 3.0 24 45-68 3-26 (197)
404 PRK09435 membrane ATPase/prote 95.7 0.066 1.4E-06 50.6 9.2 28 43-70 54-81 (332)
405 PRK00409 recombination and DNA 95.7 0.058 1.2E-06 57.3 9.8 24 44-67 326-349 (782)
406 PRK14738 gmk guanylate kinase; 95.7 0.0099 2.1E-07 52.5 3.5 25 43-67 11-35 (206)
407 PRK09519 recA DNA recombinatio 95.7 0.032 6.8E-07 58.4 7.6 97 27-133 45-148 (790)
408 cd02029 PRK_like Phosphoribulo 95.7 0.029 6.3E-07 50.9 6.4 76 47-124 1-85 (277)
409 PF13245 AAA_19: Part of AAA d 95.7 0.009 2E-07 43.3 2.6 22 46-67 11-32 (76)
410 PRK15115 response regulator Gl 95.7 0.026 5.7E-07 56.2 6.9 135 18-163 134-279 (444)
411 cd03213 ABCG_EPDR ABCG transpo 95.7 0.041 8.8E-07 48.0 7.3 24 45-68 35-58 (194)
412 PRK05986 cob(I)alamin adenolsy 95.7 0.022 4.8E-07 49.0 5.3 118 44-163 21-158 (191)
413 PRK03846 adenylylsulfate kinas 95.7 0.0098 2.1E-07 52.1 3.3 26 43-68 22-47 (198)
414 COG0003 ArsA Predicted ATPase 95.6 0.018 3.8E-07 54.1 5.1 49 45-95 2-50 (322)
415 PRK10875 recD exonuclease V su 95.6 0.064 1.4E-06 55.1 9.6 120 45-167 167-306 (615)
416 PRK00300 gmk guanylate kinase; 95.6 0.0086 1.9E-07 52.7 2.9 25 44-68 4-28 (205)
417 cd02028 UMPK_like Uridine mono 95.6 0.007 1.5E-07 52.1 2.2 23 47-69 1-23 (179)
418 PRK06217 hypothetical protein; 95.6 0.0074 1.6E-07 52.2 2.4 23 47-69 3-25 (183)
419 PRK06995 flhF flagellar biosyn 95.6 0.079 1.7E-06 52.6 9.7 26 44-69 255-280 (484)
420 COG2019 AdkA Archaeal adenylat 95.6 0.01 2.3E-07 49.2 3.0 24 45-68 4-27 (189)
421 cd00984 DnaB_C DnaB helicase C 95.6 0.073 1.6E-06 48.1 9.0 53 44-99 12-64 (242)
422 PF03205 MobB: Molybdopterin g 95.6 0.014 2.9E-07 48.0 3.7 39 46-85 1-39 (140)
423 TIGR03305 alt_F1F0_F1_bet alte 95.6 0.044 9.5E-07 53.7 7.7 87 45-132 138-241 (449)
424 PF02374 ArsA_ATPase: Anion-tr 95.6 0.013 2.9E-07 54.9 3.9 45 46-92 2-46 (305)
425 COG4181 Predicted ABC-type tra 95.5 0.17 3.7E-06 42.5 9.8 83 88-171 122-215 (228)
426 TIGR03522 GldA_ABC_ATP gliding 95.5 0.041 8.9E-07 51.7 7.2 24 45-68 28-51 (301)
427 cd01132 F1_ATPase_alpha F1 ATP 95.5 0.073 1.6E-06 48.6 8.4 82 45-132 69-170 (274)
428 COG0529 CysC Adenylylsulfate k 95.5 0.012 2.7E-07 49.3 3.1 27 43-69 21-47 (197)
429 COG2274 SunT ABC-type bacterio 95.5 0.059 1.3E-06 56.3 8.8 23 45-67 499-521 (709)
430 COG1224 TIP49 DNA helicase TIP 95.5 0.022 4.8E-07 53.1 5.0 55 17-75 38-95 (450)
431 PF03796 DnaB_C: DnaB-like hel 95.5 0.051 1.1E-06 49.8 7.5 112 45-161 19-138 (259)
432 cd00071 GMPK Guanosine monopho 95.5 0.0093 2E-07 48.9 2.3 21 48-68 2-22 (137)
433 COG0396 sufC Cysteine desulfur 95.5 0.13 2.7E-06 45.3 9.3 25 45-69 30-54 (251)
434 cd00820 PEPCK_HprK Phosphoenol 95.5 0.014 3.1E-07 45.1 3.2 22 45-66 15-36 (107)
435 cd01136 ATPase_flagellum-secre 95.5 0.13 2.8E-06 48.5 10.1 82 45-132 69-168 (326)
436 TIGR01448 recD_rel helicase, p 95.4 0.085 1.8E-06 55.6 9.8 108 46-163 339-453 (720)
437 PF13521 AAA_28: AAA domain; P 95.4 0.01 2.2E-07 50.2 2.5 20 48-67 2-21 (163)
438 TIGR01313 therm_gnt_kin carboh 95.4 0.0083 1.8E-07 50.7 2.0 21 48-68 1-21 (163)
439 PF09848 DUF2075: Uncharacteri 95.4 0.043 9.3E-07 52.8 7.1 41 46-86 2-42 (352)
440 PRK10078 ribose 1,5-bisphospho 95.4 0.012 2.5E-07 51.1 2.9 23 46-68 3-25 (186)
441 PRK13947 shikimate kinase; Pro 95.4 0.0098 2.1E-07 50.7 2.4 22 47-68 3-24 (171)
442 PLN02200 adenylate kinase fami 95.4 0.012 2.6E-07 52.9 3.1 26 43-68 41-66 (234)
443 PRK06936 type III secretion sy 95.4 0.09 2E-06 51.4 9.2 83 44-132 161-261 (439)
444 cd02027 APSK Adenosine 5'-phos 95.4 0.0094 2E-07 49.6 2.1 23 47-69 1-23 (149)
445 PRK05342 clpX ATP-dependent pr 95.4 0.017 3.8E-07 56.3 4.3 51 18-68 71-131 (412)
446 PRK14530 adenylate kinase; Pro 95.4 0.01 2.2E-07 52.8 2.5 22 47-68 5-26 (215)
447 COG2842 Uncharacterized ATPase 95.4 0.15 3.3E-06 46.6 9.9 121 16-148 70-190 (297)
448 PRK05800 cobU adenosylcobinami 95.4 0.039 8.4E-07 47.0 5.9 79 47-132 3-85 (170)
449 PF02367 UPF0079: Uncharacteri 95.4 0.025 5.4E-07 45.1 4.3 26 44-69 14-39 (123)
450 PRK08149 ATP synthase SpaL; Va 95.4 0.1 2.2E-06 51.0 9.3 85 44-132 150-250 (428)
451 PRK09099 type III secretion sy 95.4 0.074 1.6E-06 52.2 8.5 86 44-132 162-262 (441)
452 TIGR03375 type_I_sec_LssB type 95.4 0.13 2.8E-06 54.5 10.9 24 45-68 491-514 (694)
453 PRK14527 adenylate kinase; Pro 95.4 0.013 2.7E-07 51.1 2.9 26 44-69 5-30 (191)
454 cd01134 V_A-ATPase_A V/A-type 95.3 0.17 3.6E-06 47.9 10.3 47 46-96 158-205 (369)
455 PRK13407 bchI magnesium chelat 95.3 0.016 3.5E-07 54.8 3.8 45 17-67 7-51 (334)
456 PRK12678 transcription termina 95.3 0.062 1.3E-06 53.8 7.8 86 46-132 417-512 (672)
457 PRK05922 type III secretion sy 95.3 0.12 2.7E-06 50.5 9.8 84 45-132 157-256 (434)
458 PRK13949 shikimate kinase; Pro 95.3 0.011 2.5E-07 50.2 2.4 23 47-69 3-25 (169)
459 cd00464 SK Shikimate kinase (S 95.3 0.012 2.6E-07 49.1 2.4 21 48-68 2-22 (154)
460 PRK11361 acetoacetate metaboli 95.3 0.044 9.5E-07 54.8 6.9 134 19-163 144-288 (457)
461 PRK05818 DNA polymerase III su 95.3 0.29 6.4E-06 44.3 11.4 59 123-181 88-147 (261)
462 TIGR01039 atpD ATP synthase, F 95.3 0.093 2E-06 51.5 8.8 87 45-132 143-246 (461)
463 TIGR01447 recD exodeoxyribonuc 95.3 0.048 1E-06 55.8 7.2 39 126-167 262-300 (586)
464 PRK13409 putative ATPase RIL; 95.2 0.13 2.9E-06 52.9 10.4 122 45-169 365-520 (590)
465 PRK06793 fliI flagellum-specif 95.2 0.098 2.1E-06 51.2 8.8 86 44-132 155-255 (432)
466 COG1126 GlnQ ABC-type polar am 95.2 0.026 5.6E-07 49.1 4.3 36 44-82 27-62 (240)
467 TIGR01041 ATP_syn_B_arch ATP s 95.2 0.065 1.4E-06 52.9 7.6 87 46-132 142-247 (458)
468 PF06068 TIP49: TIP49 C-termin 95.2 0.021 4.6E-07 53.8 4.0 49 17-69 23-74 (398)
469 PRK08006 replicative DNA helic 95.2 0.13 2.7E-06 51.4 9.7 55 44-101 223-277 (471)
470 TIGR02524 dot_icm_DotB Dot/Icm 95.2 0.036 7.7E-07 53.2 5.6 90 46-141 135-228 (358)
471 PRK13975 thymidylate kinase; P 95.2 0.015 3.2E-07 50.9 2.8 24 46-69 3-26 (196)
472 TIGR02525 plasmid_TraJ plasmid 95.2 0.036 7.9E-07 53.3 5.6 92 46-142 150-242 (372)
473 CHL00059 atpA ATP synthase CF1 95.2 0.13 2.8E-06 50.8 9.5 82 45-132 141-242 (485)
474 PF03029 ATP_bind_1: Conserved 95.2 0.019 4E-07 51.8 3.4 34 50-85 1-34 (238)
475 TIGR00382 clpX endopeptidase C 95.2 0.029 6.3E-07 54.6 4.9 52 17-68 76-139 (413)
476 TIGR02030 BchI-ChlI magnesium 95.1 0.026 5.6E-07 53.6 4.4 44 18-67 4-47 (337)
477 PF13555 AAA_29: P-loop contai 95.1 0.022 4.7E-07 39.2 2.9 21 47-67 25-45 (62)
478 PRK13545 tagH teichoic acids e 95.1 0.2 4.3E-06 50.3 10.7 24 45-68 50-73 (549)
479 COG2401 ABC-type ATPase fused 95.1 0.02 4.2E-07 54.5 3.5 49 20-68 373-432 (593)
480 PF03969 AFG1_ATPase: AFG1-lik 95.1 0.039 8.4E-07 53.0 5.7 80 43-136 60-140 (362)
481 TIGR03878 thermo_KaiC_2 KaiC d 95.1 0.036 7.8E-07 50.8 5.2 41 43-85 34-74 (259)
482 KOG3928 Mitochondrial ribosome 95.1 0.77 1.7E-05 44.0 13.9 57 174-231 404-460 (461)
483 PRK11176 lipid transporter ATP 95.1 0.042 9.2E-07 56.8 6.3 24 45-68 369-392 (582)
484 COG2074 2-phosphoglycerate kin 95.1 0.028 6E-07 49.9 4.0 30 42-71 86-115 (299)
485 PRK05057 aroK shikimate kinase 95.1 0.016 3.5E-07 49.5 2.6 23 46-68 5-27 (172)
486 TIGR01192 chvA glucan exporter 95.0 0.13 2.9E-06 53.1 9.8 25 44-68 360-384 (585)
487 COG5635 Predicted NTPase (NACH 95.0 0.027 5.8E-07 60.5 4.7 138 45-187 222-371 (824)
488 PRK05688 fliI flagellum-specif 95.0 0.14 3E-06 50.4 9.1 84 45-132 168-267 (451)
489 TIGR02768 TraA_Ti Ti-type conj 95.0 0.16 3.4E-06 53.9 10.3 108 46-164 369-478 (744)
490 PRK13948 shikimate kinase; Pro 95.0 0.017 3.7E-07 49.7 2.6 25 44-68 9-33 (182)
491 CHL00081 chlI Mg-protoporyphyr 95.0 0.024 5.2E-07 53.9 3.8 46 16-67 15-60 (350)
492 cd03282 ABC_MSH4_euk MutS4 hom 95.0 0.026 5.5E-07 49.7 3.8 23 45-67 29-51 (204)
493 PRK08840 replicative DNA helic 95.0 0.16 3.6E-06 50.5 9.8 55 44-101 216-270 (464)
494 COG0541 Ffh Signal recognition 95.0 0.23 4.9E-06 47.9 10.2 44 27-70 79-125 (451)
495 PF00005 ABC_tran: ABC transpo 95.0 0.02 4.4E-07 46.7 2.9 24 46-69 12-35 (137)
496 PRK10646 ADP-binding protein; 95.0 0.033 7.1E-07 46.2 4.1 44 24-71 11-54 (153)
497 TIGR01040 V-ATPase_V1_B V-type 95.0 0.11 2.4E-06 50.9 8.3 87 46-132 142-256 (466)
498 cd01672 TMPK Thymidine monopho 95.0 0.048 1E-06 47.5 5.5 23 47-69 2-24 (200)
499 TIGR00041 DTMP_kinase thymidyl 95.0 0.052 1.1E-06 47.3 5.7 25 46-70 4-28 (195)
500 smart00534 MUTSac ATPase domai 95.0 0.0065 1.4E-07 52.6 -0.1 21 47-67 1-21 (185)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-62 Score=506.00 Aligned_cols=400 Identities=29% Similarity=0.444 Sum_probs=336.2
Q ss_pred ccCCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcc-cccCCCeEEEEEeCCCCCH
Q 042290 11 TTSSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR-VKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 11 ~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~ 89 (425)
+.+...... ||.+..++++.+.|.+.+ ..+++|+||||+||||||++++++.. ++.+|+.++||+|++.++.
T Consensus 152 ~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~ 224 (889)
T KOG4658|consen 152 TRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT 224 (889)
T ss_pred cCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence 344444444 999999999999998764 28999999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhh
Q 042290 90 VGITKVILQADAG---SVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVS 166 (425)
Q Consensus 90 ~~~~~~il~~l~~---~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~ 166 (425)
..++.+|+..++. .......+++...+.+.|.++|+||||||+|+.. .|+.+..+++...+||+|++|||+..|+
T Consensus 225 ~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~ 302 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVC 302 (889)
T ss_pred HhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhh
Confidence 9999999998883 2233334788999999999999999999999874 6999999999998999999999999999
Q ss_pred hc-cCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCCChHHHHHHHh
Q 042290 167 SM-VTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYDPKDWEDVLN 245 (425)
Q Consensus 167 ~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~ 245 (425)
.. ++.. ..+++..|+.+|||.||.+.++.... ...+.+++++++++++|+|+|||++++|+.|+.+.+..+|+++.+
T Consensus 303 ~~~m~~~-~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~ 380 (889)
T KOG4658|consen 303 GRAMGVD-YPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALN 380 (889)
T ss_pred hccccCC-ccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHc
Confidence 98 6654 89999999999999999999987643 334458999999999999999999999999999999999999998
Q ss_pred hcccCC----CCCchhHHHHHHHhcCCChHHHHHHHhhhccCCCCceecHHHHHHHHHHcCCcccCCCCCcHHHHHHHHH
Q 042290 246 SKIWDL----DEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQHKTDGMEMEELGRKSF 321 (425)
Q Consensus 246 ~~~~~~----~~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l 321 (425)
...+.. ++..+.+..+|++||+.||++.|.||+|||+||+++.|+.+.|+.+|+||||+.+...+...+++|..|+
T Consensus 381 ~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i 460 (889)
T KOG4658|consen 381 VLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYI 460 (889)
T ss_pred cccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHH
Confidence 875552 2234679999999999999999999999999999999999999999999999998667889999999999
Q ss_pred HHHHhCCCcccccC--CcCeEEEchHHHHHHHHHhc-----cccEEeccC--CCCCCCCCCCCCeEEEEEEeccCCcccc
Q 042290 322 QVLHSRSFFQRSKI--DASRFLMHDLIHDLACWASG-----EICFSMESN--WDGNNQGIFSRNLRHFSYLSSRFDGIKR 392 (425)
Q Consensus 322 ~~L~~~sll~~~~~--~~~~~~mH~lv~~~a~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~lsi~~~~~~~~~~ 392 (425)
.+|++++|++.... ....|+|||+|||+|.++++ ++...+..+ .........+..+||+|+.++.. . .
T Consensus 461 ~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~--~-~ 537 (889)
T KOG4658|consen 461 EELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI--E-H 537 (889)
T ss_pred HHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccch--h-h
Confidence 99999999988652 34789999999999999999 665544432 11122233567899999999742 2 2
Q ss_pred ccccCCCCCccEEEecCCC--ccchhHhhhcCCC
Q 042290 393 FEGLHEVEHLRTFLALPLS--TRKELQIGFSRYD 424 (425)
Q Consensus 393 ~~~~~~~~~lrtl~~~~~~--~~~~~~~~~~~~~ 424 (425)
...-.++++||||++.++. -..+...+|..|+
T Consensus 538 ~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~ 571 (889)
T KOG4658|consen 538 IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLP 571 (889)
T ss_pred ccCCCCCCccceEEEeecchhhhhcCHHHHhhCc
Confidence 2334478899999999863 3444555566654
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.6e-46 Score=350.05 Aligned_cols=277 Identities=33% Similarity=0.564 Sum_probs=224.4
Q ss_pred chhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 042290 23 REKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAG 102 (425)
Q Consensus 23 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 102 (425)
||.++++|.+.|.... .+.++|+|+|+||+||||||.+++++...+.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998754 478999999999999999999999976688999999999999998889999999999984
Q ss_pred C---C-CCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhhhccCCCCceeec
Q 042290 103 S---V-DVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVSSMVTTPGAAHSL 178 (425)
Q Consensus 103 ~---~-~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~~~~~~~~~~~l 178 (425)
. . ...+.+.....+.+.+.++++||||||+|+ ...|+.+...++....+++||||||+..++..+......+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWD--EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S--HHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 3 2 456788899999999999999999999965 458888888877777899999999999888776653378999
Q ss_pred CCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCCChHHHHHHHhhcccCCC---CCc
Q 042290 179 GNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYDPKDWEDVLNSKIWDLD---EDK 255 (425)
Q Consensus 179 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~---~~~ 255 (425)
++|+.++|++||.+.++... ....+..++.+++|+++|+|+||||+++|++|+.+.+..+|...+++...... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 12334456789999999999999999999999766577889988876544432 235
Q ss_pred hhHHHHHHHhcCCChHHHHHHHhhhccCCCCceecHHHHHHHHHHcCCccc
Q 042290 256 SGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQH 306 (425)
Q Consensus 256 ~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~ 306 (425)
..+..++.+||+.||+++|+||++||+||+++.|+.+.++++|+++|++..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 779999999999999999999999999999999999999999999999975
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-40 Score=362.34 Aligned_cols=364 Identities=21% Similarity=0.282 Sum_probs=266.1
Q ss_pred cCCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEe---CCCC-
Q 042290 12 TSSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYV---SEDF- 87 (425)
Q Consensus 12 ~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~~- 87 (425)
.++.+...+|||+..+++|..+|.-.. ..+++|+|+||||+||||||+.+|+ +...+|+..+|+.. ....
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~ 251 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSME 251 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchh
Confidence 344556789999999999999885433 4789999999999999999999999 56678988888742 1110
Q ss_pred ----------C-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEE
Q 042290 88 ----------D-AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKI 156 (425)
Q Consensus 88 ----------~-~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~i 156 (425)
. ...+..+++..+....... ... ...+++.+.++++||||||+|+ ...|+.+.......++|++|
T Consensus 252 ~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~-~~~-~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrI 327 (1153)
T PLN03210 252 IYSSANPDDYNMKLHLQRAFLSEILDKKDIK-IYH-LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRI 327 (1153)
T ss_pred hcccccccccchhHHHHHHHHHHHhCCCCcc-cCC-HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEE
Confidence 0 1233444444443211111 001 1456778899999999999965 46788887766666789999
Q ss_pred EEecCChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCCC
Q 042290 157 IVTTRNEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYD 236 (425)
Q Consensus 157 lvTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~ 236 (425)
|||||+..++...... +.|+++.|+.++|++||+++||+... +...+.+++++|+++|+|+||||+++|+.|+.+ +
T Consensus 328 IiTTrd~~vl~~~~~~-~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~ 403 (1153)
T PLN03210 328 IVITKDKHFLRAHGID-HIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-D 403 (1153)
T ss_pred EEEeCcHHHHHhcCCC-eEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-C
Confidence 9999999888766555 79999999999999999999987542 345678899999999999999999999999987 8
Q ss_pred hHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChH-HHHHHHhhhccCCCCceecHHHHHHHHHHcCCcccCCCCCcHHH
Q 042290 237 PKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPS-HVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQHKTDGMEMEE 315 (425)
Q Consensus 237 ~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~ 315 (425)
..+|..++.+....+. ..+..+|++||+.|++ ..|.||+++|+|+.+..++ .+..|++.+....
T Consensus 404 ~~~W~~~l~~L~~~~~---~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~--------- 468 (1153)
T PLN03210 404 KEDWMDMLPRLRNGLD---GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV--------- 468 (1153)
T ss_pred HHHHHHHHHHHHhCcc---HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------
Confidence 8999999988765432 4599999999999987 5999999999999887654 3667777755432
Q ss_pred HHHHHHHHHHhCCCcccccCCcCeEEEchHHHHHHHHHhcccc-------EEecc-CCCCC-CCCCCCCCeEEEEEEecc
Q 042290 316 LGRKSFQVLHSRSFFQRSKIDASRFLMHDLIHDLACWASGEIC-------FSMES-NWDGN-NQGIFSRNLRHFSYLSSR 386 (425)
Q Consensus 316 ~~~~~l~~L~~~sll~~~~~~~~~~~mH~lv~~~a~~~~~~~~-------~~~~~-~~~~~-~~~~~~~~~r~lsi~~~~ 386 (425)
+..++.|+++||++.. ...+.||+++|++|++++.++. +.... +.... .......+++++++..+.
T Consensus 469 --~~~l~~L~~ksLi~~~---~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 469 --NIGLKNLVDKSLIHVR---EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred --hhChHHHHhcCCEEEc---CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 2248999999999875 3579999999999999987663 11110 00000 001134678888887653
Q ss_pred CCcccc-ccccCCCCCccEEEecC
Q 042290 387 FDGIKR-FEGLHEVEHLRTFLALP 409 (425)
Q Consensus 387 ~~~~~~-~~~~~~~~~lrtl~~~~ 409 (425)
...... ...+..+.+||.|.++.
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~ 567 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYT 567 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEec
Confidence 221111 12234577777776653
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.76 E-value=7e-17 Score=174.55 Aligned_cols=295 Identities=17% Similarity=0.182 Sum_probs=187.1
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC-CCHHHH
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED-FDAVGI 92 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~ 92 (425)
|..+..+|-|+.-++.|.+ . ...+++.|+|++|.||||++.++... ++.++|+++... .+...+
T Consensus 10 p~~~~~~~~R~rl~~~l~~----~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f 74 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG----A-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERF 74 (903)
T ss_pred CCCccccCcchHHHHHHhc----c-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHH
Confidence 3334567888875554432 1 25689999999999999999998862 125899998644 456667
Q ss_pred HHHHHHHhcC--CC------------CCCCHHHHHHHHHHHcC--CceEEEEEeCCCCCChHHHhccccc-cCCCCCCcE
Q 042290 93 TKVILQADAG--SV------------DVNDLNLLQLQLENQLK--NKKFLLVLDDMWSENYDVRANLCKP-FKAGLPGSK 155 (425)
Q Consensus 93 ~~~il~~l~~--~~------------~~~~~~~~~~~l~~~l~--~k~~LLVlDdv~~~~~~~~~~l~~~-l~~~~~~~~ 155 (425)
+..++..+.. .. ...+...+...+...+. +.+++|||||++..+......++.. +.....+.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 6777776641 10 01222333333333333 6789999999976554444433333 333456678
Q ss_pred EEEecCChhhhhc--cCCCCceeecC----CCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhh
Q 042290 156 IIVTTRNEGVSSM--VTTPGAAHSLG----NLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGG 229 (425)
Q Consensus 156 ilvTtR~~~v~~~--~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 229 (425)
+|||||...-... +........+. +|+.+|+.++|........ ..+.+.+|++.|+|+|+++..++.
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHH
Confidence 9999998422111 11111345555 9999999999987643221 226678899999999999999988
Q ss_pred hhccCCC-hHHHHHHHhhcccCCCC-CchhHHHHHHH-hcCCChHHHHHHHhhhccCCCCceecHHHHHHHHHHcCCccc
Q 042290 230 LLRDKYD-PKDWEDVLNSKIWDLDE-DKSGIMRALRV-SYYYLPSHVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQH 306 (425)
Q Consensus 230 ~L~~~~~-~~~w~~~l~~~~~~~~~-~~~~~~~~l~~-sy~~L~~~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~ 306 (425)
.+..... .... .. .+.. ....+...+.- .++.||++.++++..+|+++. ++.+.+-.+. |
T Consensus 228 ~~~~~~~~~~~~---~~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~l~---~---- 290 (903)
T PRK04841 228 SARQNNSSLHDS---AR----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVRVT---G---- 290 (903)
T ss_pred HHhhCCCchhhh---hH----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHHHc---C----
Confidence 7755421 1111 11 1111 12236665544 488999999999999999973 3433222211 1
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCccc-ccCCcCeEEEchHHHHHHHHHh
Q 042290 307 KTDGMEMEELGRKSFQVLHSRSFFQR-SKIDASRFLMHDLIHDLACWAS 354 (425)
Q Consensus 307 ~~~~~~~e~~~~~~l~~L~~~sll~~-~~~~~~~~~mH~lv~~~a~~~~ 354 (425)
. +.+...+++|.+.+++.. .+.+..+|+.|++++++++...
T Consensus 291 ---~----~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ---E----ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---C----CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1 124678999999999753 3323468999999999998775
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.65 E-value=2.1e-14 Score=143.70 Aligned_cols=301 Identities=18% Similarity=0.172 Sum_probs=199.3
Q ss_pred CCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC-CHHH
Q 042290 13 SSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF-DAVG 91 (425)
Q Consensus 13 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~ 91 (425)
+|+.+...|-|..- .+.|... .+.+.+.|..|+|.|||||+.+++. + ...-..+.|+++++.. ++..
T Consensus 14 ~P~~~~~~v~R~rL----~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~r 81 (894)
T COG2909 14 RPVRPDNYVVRPRL----LDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPAR 81 (894)
T ss_pred CCCCcccccccHHH----HHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHH
Confidence 33445566777764 4444322 3679999999999999999999976 2 1223468999987654 5777
Q ss_pred HHHHHHHHhcC--C------------CCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCCChHHHh-ccccccCCCCCCc
Q 042290 92 ITKVILQADAG--S------------VDVNDLNLLQLQLENQLK--NKKFLLVLDDMWSENYDVRA-NLCKPFKAGLPGS 154 (425)
Q Consensus 92 ~~~~il~~l~~--~------------~~~~~~~~~~~~l~~~l~--~k~~LLVlDdv~~~~~~~~~-~l~~~l~~~~~~~ 154 (425)
+...++..++. + ....+...+.+.+...+. .+++.|||||.+-....... .+...+.+...+.
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l 161 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENL 161 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCe
Confidence 77777777761 1 123344445555655554 46899999998643322333 3444455566789
Q ss_pred EEEEecCChhhhhccC--CCCceeecC----CCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 155 KIIVTTRNEGVSSMVT--TPGAAHSLG----NLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 155 ~ilvTtR~~~v~~~~~--~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
.+|||||+..-..... .....++++ .|+.+|+.++|....... -.+..++.+++.++|.+-|+..++
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-------Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP-------LDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC-------CChHHHHHHHhhcccHHHHHHHHH
Confidence 9999999963322111 111233333 688999999998875222 123668889999999999999999
Q ss_pred hhhccCCChHHHHHHHhhcccCCCCCchhHHHH-HHHhcCCChHHHHHHHhhhccCCCCceecHHHHHHHHHHcCCcccC
Q 042290 229 GLLRDKYDPKDWEDVLNSKIWDLDEDKSGIMRA-LRVSYYYLPSHVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQHK 307 (425)
Q Consensus 229 ~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~~ 307 (425)
-.++.+.+...-...+ ....+.+... ..-.++.||+++|..+.-+|+++. +. ..|+..-
T Consensus 235 La~~~~~~~~q~~~~L-------sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~L--------- 294 (894)
T COG2909 235 LALRNNTSAEQSLRGL-------SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNAL--------- 294 (894)
T ss_pred HHccCCCcHHHHhhhc-------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHH---------
Confidence 9988543433332222 2222234443 456789999999999999999975 12 2233221
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCcc-cccCCcCeEEEchHHHHHHHHHhcc
Q 042290 308 TDGMEMEELGRKSFQVLHSRSFFQ-RSKIDASRFLMHDLIHDLACWASGE 356 (425)
Q Consensus 308 ~~~~~~e~~~~~~l~~L~~~sll~-~~~~~~~~~~mH~lv~~~a~~~~~~ 356 (425)
+-++.+...+++|.+++|+- +-+....+|+.|+++.+|.+.....
T Consensus 295 ----tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 ----TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ----hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 11234667899999999984 4444678999999999999887765
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.63 E-value=8.2e-14 Score=136.26 Aligned_cols=309 Identities=15% Similarity=0.045 Sum_probs=182.4
Q ss_pred CCCcccCCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 7 RPLSTTSSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 7 ~~~~~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
.+.+-.+...+..|+||++|+++|...|...-. +...+.+.|+|++|+|||++++.++++.......-..+++++...
T Consensus 19 ~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 19 DEEVLEPDYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred ChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 344444444668899999999999999854321 234456889999999999999999986533322334677777777
Q ss_pred CCHHHHHHHHHHHhcC-C--CCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCCC----hHHHhccccccCCCC-CCcEE
Q 042290 87 FDAVGITKVILQADAG-S--VDVNDLNLLQLQLENQLK--NKKFLLVLDDMWSEN----YDVRANLCKPFKAGL-PGSKI 156 (425)
Q Consensus 87 ~~~~~~~~~il~~l~~-~--~~~~~~~~~~~~l~~~l~--~k~~LLVlDdv~~~~----~~~~~~l~~~l~~~~-~~~~i 156 (425)
.+...++..++.++.. . ....+..++...+.+.+. +++.+||||+++... .+.+..+...+.... .+..+
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~v 176 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGV 176 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEE
Confidence 7888889999998863 2 223345666677766664 457899999996421 223333333222211 13335
Q ss_pred EEecCChhhhhccC----C--CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhh----CCChhHHHH
Q 042290 157 IVTTRNEGVSSMVT----T--PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRC----NGSPLAAKT 226 (425)
Q Consensus 157 lvTtR~~~v~~~~~----~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~----~G~PLai~~ 226 (425)
|.++....+..... . ....+.+.+++.++..+++..++...... ..-.++.++.|++.+ |..+.++.+
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~--~~~~~~~l~~i~~~~~~~~Gd~r~a~~l 254 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP--GVVDDEVLDLIADLTAREHGDARVAIDL 254 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc--CCCCHhHHHHHHHHHHHhcCcHHHHHHH
Confidence 66655543322211 0 12468999999999999999876322110 011124444455544 446677766
Q ss_pred hhhhh--c--cC---CChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHHHHHHhhhccCCC--CceecHHHHHHH
Q 042290 227 LGGLL--R--DK---YDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPK--GYEFDERQIVLL 297 (425)
Q Consensus 227 ~~~~L--~--~~---~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp~--~~~i~~~~li~~ 297 (425)
+-... . .+ .+.+.....+... ....+.-.+..||.+.|..+..++..-+ ...+....+...
T Consensus 255 l~~a~~~a~~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~ 324 (394)
T PRK00411 255 LRRAGLIAEREGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEE 324 (394)
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 64322 1 11 3445555555432 1233455688999999888877664321 123444444432
Q ss_pred --HHHcCCcccCCCCCcHHHHHHHHHHHHHhCCCcccc
Q 042290 298 --WMAEGLLQHKTDGMEMEELGRKSFQVLHSRSFFQRS 333 (425)
Q Consensus 298 --W~aeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~ 333 (425)
.+++.+-. .........++++.|...|+|+..
T Consensus 325 y~~l~~~~~~----~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 325 YKELCEELGY----EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHcCC----CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 22221111 011223356689999999998754
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.57 E-value=1.2e-12 Score=126.66 Aligned_cols=305 Identities=12% Similarity=0.045 Sum_probs=177.2
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccc-cCC---CeEEEEEeCCCCCH
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVK-KYF---SFRAWAYVSEDFDA 89 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~-~~f---~~~~wv~~~~~~~~ 89 (425)
...|..|+||++|+++|..+|...-. +...+.+.|+|++|+|||++++.++++.... ... -..+|+++....+.
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence 34456899999999999999864221 1344678999999999999999999854211 111 24677888777778
Q ss_pred HHHHHHHHHHhc---CC--CCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCCC---hHHHhcccccc--CCC-CCCcEE
Q 042290 90 VGITKVILQADA---GS--VDVNDLNLLQLQLENQLK--NKKFLLVLDDMWSEN---YDVRANLCKPF--KAG-LPGSKI 156 (425)
Q Consensus 90 ~~~~~~il~~l~---~~--~~~~~~~~~~~~l~~~l~--~k~~LLVlDdv~~~~---~~~~~~l~~~l--~~~-~~~~~i 156 (425)
..++..++.++. .. ....+..+....+.+.+. +++++||||+++... .+....+.... ... .....+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 888999998883 11 122344555555655553 568899999995431 11122222221 111 123345
Q ss_pred EEecCChhhhhcc----CCC--CceeecCCCChhhHHHHHHHhhcCCC-CcCCCcchHHHHHHHHHhhCCChhHHHHhhh
Q 042290 157 IVTTRNEGVSSMV----TTP--GAAHSLGNLLRDGCLRIFVQHSLRRT-DFVAHQYLSEIGEKIVDRCNGSPLAAKTLGG 229 (425)
Q Consensus 157 lvTtR~~~v~~~~----~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 229 (425)
|+++........+ ... ...+.+.+.+.++..+++..++.... ...-.++..+.+..++..+.|.|..+..+..
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5555433221111 111 14689999999999999998864211 1112222234455577777898855433322
Q ss_pred hh---c--c---CCChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHHHHHHhhhccCC--CCceecHHHHHHHH-
Q 042290 230 LL---R--D---KYDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLP--KGYEFDERQIVLLW- 298 (425)
Q Consensus 230 ~L---~--~---~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp--~~~~i~~~~li~~W- 298 (425)
.. . . ..+.+......+.. -.....-++..||.+.+.++..++..- ++..+....+...+
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 11 1 1 13344444444332 123344567789998887777665321 23345555665533
Q ss_pred -HHcCCcccCCCCCcHHHHHHHHHHHHHhCCCccccc
Q 042290 299 -MAEGLLQHKTDGMEMEELGRKSFQVLHSRSFFQRSK 334 (425)
Q Consensus 299 -~aeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 334 (425)
+.+.+ . ..+.......++++.|...||+....
T Consensus 319 ~~~~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 319 EVCEDI-G---VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHhc-C---CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 12211 0 11234566788999999999998653
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.55 E-value=7.6e-13 Score=122.54 Aligned_cols=183 Identities=21% Similarity=0.142 Sum_probs=117.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-----
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQ----- 119 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~----- 119 (425)
.+++.|+|++|+|||||++.+++.... ... ...|+ +....+..+++..++..++......+.......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 458999999999999999999986432 111 12233 3334567788888888887433333333333333322
Q ss_pred cCCceEEEEEeCCCCCChHHHhccccccCC---CCCCcEEEEecCChhhhhccC---------CCCceeecCCCChhhHH
Q 042290 120 LKNKKFLLVLDDMWSENYDVRANLCKPFKA---GLPGSKIIVTTRNEGVSSMVT---------TPGAAHSLGNLLRDGCL 187 (425)
Q Consensus 120 l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~---~~~~~~ilvTtR~~~v~~~~~---------~~~~~~~l~~L~~~ea~ 187 (425)
..+++.+||+||+|......++.+...... ......|++|.... ....+. .....+++++|+.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 267889999999988766666665432221 12233556666543 211111 11246789999999999
Q ss_pred HHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhh
Q 042290 188 RIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLL 231 (425)
Q Consensus 188 ~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L 231 (425)
+++...+..........-.++..+.|++.|+|+|..|+.++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99988764332111122345789999999999999999998876
No 9
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.50 E-value=6.6e-13 Score=139.59 Aligned_cols=312 Identities=13% Similarity=0.134 Sum_probs=185.0
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEE---EEEeCCCCC---HHHH
Q 042290 19 EVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRA---WAYVSEDFD---AVGI 92 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~---wv~~~~~~~---~~~~ 92 (425)
.++||+.|++.|...+..... +...++.+.|.+|+|||+|+++|.+.. .+.+...+ +-....... ....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i--~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPI--TQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHH--hccceeeeHhhcccccCCCchHHHHHH
Confidence 379999999999999977653 556799999999999999999998843 33322111 111222222 2223
Q ss_pred HHHHHHHhcCCC---------------------------------C---------CCCHHH-----HHHHHHHHc-CCce
Q 042290 93 TKVILQADAGSV---------------------------------D---------VNDLNL-----LQLQLENQL-KNKK 124 (425)
Q Consensus 93 ~~~il~~l~~~~---------------------------------~---------~~~~~~-----~~~~l~~~l-~~k~ 124 (425)
+++++.++.... + ...... ....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 333333331000 0 000000 111122222 3569
Q ss_pred EEEEEeCCCCCChHHHhccccccCCCC------CCcEEEEecCChh-hhhccCCCCceeecCCCChhhHHHHHHHhhcCC
Q 042290 125 FLLVLDDMWSENYDVRANLCKPFKAGL------PGSKIIVTTRNEG-VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRR 197 (425)
Q Consensus 125 ~LLVlDdv~~~~~~~~~~l~~~l~~~~------~~~~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 197 (425)
.++|+||+++.|.....-+........ +....+.|.+..- ....-......+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999997776555554333222211 1122233333321 111111123789999999999999998886442
Q ss_pred CCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccC------CChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChH
Q 042290 198 TDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDK------YDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPS 271 (425)
Q Consensus 198 ~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~ 271 (425)
. ....+....|++++.|+|+.+..+-..+..+ .+...|..-..+. ... .....+...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~~-~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GIL-ATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CCc-hhhHHHHHHHHHHHhcCCH
Confidence 2 2223667889999999999999999988774 3334443322221 111 1112266678999999999
Q ss_pred HHHHHHhhhccCCCCceecHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHHhCCCcccccC-----CcCe--E-EEc
Q 042290 272 HVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQHKTDGMEMEELGRKSFQVLHSRSFFQRSKI-----DASR--F-LMH 343 (425)
Q Consensus 272 ~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~-----~~~~--~-~mH 343 (425)
..++.+...|++...| +...|...+- ......+...++.|....++-..+. .... | ..|
T Consensus 309 ~t~~Vl~~AA~iG~~F--~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIGNRF--DLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhCccC--CHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 9999999999997655 5556665542 2345566666777766655542211 1222 2 579
Q ss_pred hHHHHHHHHHhc
Q 042290 344 DLIHDLACWASG 355 (425)
Q Consensus 344 ~lv~~~a~~~~~ 355 (425)
+++++.|-....
T Consensus 376 ~~vqqaaY~~i~ 387 (849)
T COG3899 376 DRVQQAAYNLIP 387 (849)
T ss_pred HHHHHHHhccCc
Confidence 999998865543
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.46 E-value=9.1e-13 Score=125.24 Aligned_cols=265 Identities=20% Similarity=0.191 Sum_probs=148.5
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
-.+|+||++.++.+..++..... .+...+.+.|+|++|+|||+||+.+++... ..+ .++... .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHHH
Confidence 36799999999999888754211 123456789999999999999999998543 111 112211 11111111122
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccC-------------------CCCCCcEEE
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFK-------------------AGLPGSKII 157 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~-------------------~~~~~~~il 157 (425)
+..+ ++..+|+||+++.......+.+...+. ...+.+-|.
T Consensus 97 l~~l---------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 97 LTNL---------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred HHhc---------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 2211 123466667664322111111111100 001234566
Q ss_pred EecCChhhhhccCCC-CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCCC
Q 042290 158 VTTRNEGVSSMVTTP-GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYD 236 (425)
Q Consensus 158 vTtR~~~v~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~ 236 (425)
.|++...+...+... ...+.+++++.++..+++.+.+..... .-.++.+..|++.|+|.|-.+..+...+.
T Consensus 156 at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~---- 227 (328)
T PRK00080 156 ATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVR---- 227 (328)
T ss_pred ecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHH----
Confidence 677755443322111 246899999999999999988754321 12236789999999999976665555332
Q ss_pred hHHHHHHHhhcccCCCCC-chhHHHHHHHhcCCChHHHHHHHh-hhccCCCCceecHHHHHHHHHHcCCcccCCCCCcHH
Q 042290 237 PKDWEDVLNSKIWDLDED-KSGIMRALRVSYYYLPSHVKRCFA-HCSLLPKGYEFDERQIVLLWMAEGLLQHKTDGMEME 314 (425)
Q Consensus 237 ~~~w~~~l~~~~~~~~~~-~~~~~~~l~~sy~~L~~~~k~~~~-~la~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e 314 (425)
.|...... ...... -......+...+..|++..+..+. .+..|+.+ ++..+.+.... |. + .
T Consensus 228 --~~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g~-----~----~ 290 (328)
T PRK00080 228 --DFAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---GE-----E----R 290 (328)
T ss_pred --HHHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---CC-----C----c
Confidence 12111110 011100 122334556778889988888886 77778765 56666654433 11 1 1
Q ss_pred HHHHHHHH-HHHhCCCccccc
Q 042290 315 ELGRKSFQ-VLHSRSFFQRSK 334 (425)
Q Consensus 315 ~~~~~~l~-~L~~~sll~~~~ 334 (425)
+.+++.++ .|++.+|++...
T Consensus 291 ~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 291 DTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred chHHHHhhHHHHHcCCcccCC
Confidence 23444455 899999998654
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.45 E-value=2.3e-12 Score=121.50 Aligned_cols=264 Identities=18% Similarity=0.162 Sum_probs=143.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+|||+++.++.|..++..... .......+.|+|++|+|||+||+.+++... ..+ ..+.......... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHHHH
Confidence 4699999999999988864321 123455688999999999999999998532 111 1111111111111 11111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccC-------------------CCCCCcEEEE
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFK-------------------AGLPGSKIIV 158 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~-------------------~~~~~~~ilv 158 (425)
..+ +...+|+||+++.......+.+...+. ...+.+-|..
T Consensus 77 ~~~---------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 77 TNL---------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred Hhc---------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 111 122355555553322222111111110 0112445666
Q ss_pred ecCChhhhhccCCC-CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCCCh
Q 042290 159 TTRNEGVSSMVTTP-GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYDP 237 (425)
Q Consensus 159 TtR~~~v~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~ 237 (425)
||+...+...+... ...+.+++++.++..+++.+.+..... .-.++.+..|++.|+|.|..+..++..+..
T Consensus 136 t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~~~---- 207 (305)
T TIGR00635 136 TTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRVRD---- 207 (305)
T ss_pred cCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHHHH----
Confidence 77765443322111 246899999999999999987753221 122467788999999999877665553311
Q ss_pred HHHHHHHhhcccCCCC-CchhHHHHHHHhcCCChHHHHHHHh-hhccCCCCceecHHHHHHHHHHcCCcccCCCCCcHHH
Q 042290 238 KDWEDVLNSKIWDLDE-DKSGIMRALRVSYYYLPSHVKRCFA-HCSLLPKGYEFDERQIVLLWMAEGLLQHKTDGMEMEE 315 (425)
Q Consensus 238 ~~w~~~l~~~~~~~~~-~~~~~~~~l~~sy~~L~~~~k~~~~-~la~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~ 315 (425)
.....+. ..... .-......+...|..|+...+..+. .++.++.+ ++....+.... |. ...
T Consensus 208 --~a~~~~~--~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~ 270 (305)
T TIGR00635 208 --FAQVRGQ--KIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DAD 270 (305)
T ss_pred --HHHHcCC--CCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------Ccc
Confidence 0000010 00100 0011222356678889988887777 55667543 45544444322 11 113
Q ss_pred HHHHHHH-HHHhCCCccccc
Q 042290 316 LGRKSFQ-VLHSRSFFQRSK 334 (425)
Q Consensus 316 ~~~~~l~-~L~~~sll~~~~ 334 (425)
.++..++ .|++++|++...
T Consensus 271 ~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 271 TIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred hHHHhhhHHHHHcCCcccCC
Confidence 3556677 699999997554
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.44 E-value=3.1e-13 Score=122.20 Aligned_cols=195 Identities=20% Similarity=0.178 Sum_probs=100.5
Q ss_pred cccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH---
Q 042290 20 VYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI--- 96 (425)
Q Consensus 20 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 96 (425)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++++.+.. +..-...+|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~~~-~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNESS-LRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhhhH-HHHHHHH
Confidence 799999999999999653 24689999999999999999999843 22111344544433332222 2222
Q ss_pred -------HHHhc---CCC--------CCCCHHHHHHHHHHHc--CCceEEEEEeCCCCCC------hHHHhccccccCC-
Q 042290 97 -------LQADA---GSV--------DVNDLNLLQLQLENQL--KNKKFLLVLDDMWSEN------YDVRANLCKPFKA- 149 (425)
Q Consensus 97 -------l~~l~---~~~--------~~~~~~~~~~~l~~~l--~~k~~LLVlDdv~~~~------~~~~~~l~~~l~~- 149 (425)
...+. ... ...........+.+.+ .+++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11122 110 0111122222222222 2345999999994322 1222223332222
Q ss_pred -CCCCcEEEEecCChhhhhc--------cCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 150 -GLPGSKIIVTTRNEGVSSM--------VTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 150 -~~~~~~ilvTtR~~~v~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
......+|+++.+...... .... ..+.+++|+.+++++++....... . .. +..++..++|+..+||+
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRF-SHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT----EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cccCCceEEEECCchHHHHHhhcccCcccccc-ceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCC
Confidence 1233344455444333322 1222 459999999999999999865333 1 11 22346679999999999
Q ss_pred hhHHHHh
Q 042290 221 PLAAKTL 227 (425)
Q Consensus 221 PLai~~~ 227 (425)
|..|..+
T Consensus 228 P~~l~~~ 234 (234)
T PF01637_consen 228 PRYLQEL 234 (234)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9998753
No 13
>PF05729 NACHT: NACHT domain
Probab=99.26 E-value=2.8e-11 Score=103.20 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=87.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccC----CCeEEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKY----FSFRAWAYVSEDFDAV---GITKVILQADAGSVDVNDLNLLQLQLEN 118 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~l~~ 118 (425)
+++.|+|.+|+||||+++.++.+...... +...+|++........ .+...+....... ..........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~-- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES--IAPIEELLQEL-- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc--hhhhHHHHHHH--
Confidence 47899999999999999999886544333 3456677665543322 3333333333211 11111111111
Q ss_pred HcCCceEEEEEeCCCCCCh-------HHHhcccccc-CC-CCCCcEEEEecCChhh---hhccCCCCceeecCCCChhhH
Q 042290 119 QLKNKKFLLVLDDMWSENY-------DVRANLCKPF-KA-GLPGSKIIVTTRNEGV---SSMVTTPGAAHSLGNLLRDGC 186 (425)
Q Consensus 119 ~l~~k~~LLVlDdv~~~~~-------~~~~~l~~~l-~~-~~~~~~ilvTtR~~~v---~~~~~~~~~~~~l~~L~~~ea 186 (425)
....++++||||++++... ..+..+...+ .. ..++++++||+|.... ....... ..+++.+|++++.
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA-QILELEPFSEEDI 155 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC-cEEEECCCCHHHH
Confidence 1257899999999954221 1223333222 22 2568999999998755 3333333 6899999999999
Q ss_pred HHHHHHhh
Q 042290 187 LRIFVQHS 194 (425)
Q Consensus 187 ~~Lf~~~~ 194 (425)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997764
No 14
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.23 E-value=1.6e-09 Score=110.09 Aligned_cols=304 Identities=15% Similarity=0.105 Sum_probs=163.0
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccc---ccCC--CeEEEEEeCCCCCHH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV---KKYF--SFRAWAYVSEDFDAV 90 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~---~~~f--~~~~wv~~~~~~~~~ 90 (425)
.|..+.|||+|+++|...|...-. +.....++.|+|++|+|||++++.|.+.... .... -..++|++....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 357899999999999988865322 1223357789999999999999999875421 1111 236778877777788
Q ss_pred HHHHHHHHHhcCC--CCCCCHHHHHHHHHHHcC---CceEEEEEeCCCCCChHHHhccccccCC-CCCCcEEEE--ecCC
Q 042290 91 GITKVILQADAGS--VDVNDLNLLQLQLENQLK---NKKFLLVLDDMWSENYDVRANLCKPFKA-GLPGSKIIV--TTRN 162 (425)
Q Consensus 91 ~~~~~il~~l~~~--~~~~~~~~~~~~l~~~l~---~k~~LLVlDdv~~~~~~~~~~l~~~l~~-~~~~~~ilv--TtR~ 162 (425)
.++..|..++... ............+...+. ....+||||+++......-+.|...+.. ...+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 8888888888522 222223344444444442 2346899999953221111222222221 123444443 3432
Q ss_pred hhhhh----ccCCC--CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccC--
Q 042290 163 EGVSS----MVTTP--GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDK-- 234 (425)
Q Consensus 163 ~~v~~----~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~-- 234 (425)
..... .+... ...+...|.+.++..+++..++..........-++-+++.++...|-.=.||.++-......
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 21111 11111 13477899999999999999875422111122222233323333333344554443333211
Q ss_pred --CChHHHHHHHhhcccCCCCCchhHHHHHHHhcCCChHHHHHHHhhhccCCC---CceecHHHHHHHH--HHc--C-Cc
Q 042290 235 --YDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPK---GYEFDERQIVLLW--MAE--G-LL 304 (425)
Q Consensus 235 --~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~~~~la~fp~---~~~i~~~~li~~W--~ae--g-~i 304 (425)
.+.+....+.... ....+.-....||.+.|-+|..+...-+ ...++...+.... +++ | .+
T Consensus 992 skVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 1222222222211 1122344556899998877765443222 2245555554432 333 1 11
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhCCCccccc
Q 042290 305 QHKTDGMEMEELGRKSFQVLHSRSFFQRSK 334 (425)
Q Consensus 305 ~~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 334 (425)
. .....+ ....++.+|...|+|-..+
T Consensus 1062 G---v~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1062 G---MCSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred C---CCCcHH-HHHHHHHHHHhcCeEEecC
Confidence 1 112233 6778899999999997654
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.13 E-value=5.6e-09 Score=102.36 Aligned_cols=196 Identities=18% Similarity=0.205 Sum_probs=115.5
Q ss_pred CccccchhhHHH---HHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEA---IVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
.++||++..+.. |..++... ....+.|+|++|+||||||+.+++.. ... |+.++........+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHHH
Confidence 468888887665 77777443 34578899999999999999998843 222 222222211111112
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHH-HcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEE--ecCChh--hhhcc
Q 042290 95 VILQADAGSVDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIV--TTRNEG--VSSMV 169 (425)
Q Consensus 95 ~il~~l~~~~~~~~~~~~~~~l~~-~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv--TtR~~~--v~~~~ 169 (425)
.++.. ... ...+++.+|+||+++.......+.++..+.. +..+++ ||.+.. +...+
T Consensus 79 ~ii~~----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 79 EVIEE----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHHH----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 22221 111 1245778999999987766666666665543 343443 344431 21122
Q ss_pred CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhc---cCCChHHHHHHHhh
Q 042290 170 TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLR---DKYDPKDWEDVLNS 246 (425)
Q Consensus 170 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~---~~~~~~~w~~~l~~ 246 (425)
.+....+.+.+++.++...++.+.+..... ....-.++....|++.|+|.+..+..+...+. ...+.+....++..
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~ 218 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQK 218 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhh
Confidence 222368999999999999999886532111 00122346778899999999987655544331 12345555555544
No 16
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=4.7e-09 Score=106.14 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=119.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-...... ..+..-.....|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHh
Confidence 568999999999999986532 3456789999999999999988875431111100 0000000011110
Q ss_pred HH-----hc-CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhh
Q 042290 98 QA-----DA-GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVS 166 (425)
Q Consensus 98 ~~-----l~-~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~ 166 (425)
.. +. ........+++.+.+... ..++.-++|||+++......++.|+..+.....+.++|+||.+. .+.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 00 00 000111222333322221 12455689999998888888999988887766678877777663 343
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh-hHHHHhhh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP-LAAKTLGG 229 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lai~~~~~ 229 (425)
..+.+....+.+++++.++..+.+.+.+..... .-.++....|++.++|.. -++.++-.
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 333333478999999999999998876533211 122367788999998865 46555433
No 17
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.10 E-value=1e-08 Score=95.33 Aligned_cols=255 Identities=18% Similarity=0.191 Sum_probs=140.0
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
...+++|-...+.++++ .+++....+||++|+||||||+.++.. ....| ..++...+-..-++.
T Consensus 28 GQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~ 91 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLRE 91 (436)
T ss_pred ChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHH
Confidence 33445555544444433 246678889999999999999999883 33333 333333322222233
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEE--ecCChhh--hhccCC
Q 042290 96 ILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIV--TTRNEGV--SSMVTT 171 (425)
Q Consensus 96 il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv--TtR~~~v--~~~~~~ 171 (425)
+++.. -+....+++++|++|.++.-+..+-+.++..+. +|.-|+| ||.+... -..+-+
T Consensus 92 i~e~a---------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 92 IIEEA---------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHHHH---------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhh
Confidence 32221 122334889999999998777666666655443 4555554 5555422 222223
Q ss_pred CCceeecCCCChhhHHHHHHHhhcCCCCcCC---CcchHHHHHHHHHhhCCChhHHHH----hhhhhccC--CChHHHHH
Q 042290 172 PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVA---HQYLSEIGEKIVDRCNGSPLAAKT----LGGLLRDK--YDPKDWED 242 (425)
Q Consensus 172 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~---~~~~~~~~~~I~~~~~G~PLai~~----~~~~L~~~--~~~~~w~~ 242 (425)
...++.+++|+.++...++.+.+........ ..-.++....|+..++|--...-. +..+.+.. ...+..++
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 3479999999999999999884422211111 112245778889999986543322 22222222 13566666
Q ss_pred HHhhcccCCCCCc---hhHHHHHHHhcCCChHHHHHHHhhhccCCCCc--e-ecHHHHHHHHHHcCCcc
Q 042290 243 VLNSKIWDLDEDK---SGIMRALRVSYYYLPSHVKRCFAHCSLLPKGY--E-FDERQIVLLWMAEGLLQ 305 (425)
Q Consensus 243 ~l~~~~~~~~~~~---~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~~--~-i~~~~li~~W~aeg~i~ 305 (425)
.+.+.....+... -++..+|.-|...=++++. ++.++=++-.|. . |-+..++.-|-.-|+..
T Consensus 234 ~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAA-LyylARmi~~GeDp~yiARRlv~~AsEDIGlAd 301 (436)
T COG2256 234 ILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAA-LYYLARMIEAGEDPLYIARRLVRIASEDIGLAD 301 (436)
T ss_pred HHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHH-HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCC
Confidence 6665444433332 2466667777766555432 233333333333 1 34444444444445543
No 18
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.02 E-value=2.9e-08 Score=95.00 Aligned_cols=200 Identities=12% Similarity=0.078 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCC-eEEEEEeCCCCCH--HHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFS-FRAWAYVSEDFDA--VGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~--~~~~~ 94 (425)
.+++|++..++.|.+++... ..+.+.++|++|+|||++|+.+++... ...+. ..+.+++++.... ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 56899999999999988543 334688999999999999999988532 11221 2334443321100 00000
Q ss_pred --HHHHHhcC--CCCCCCHHHHHHHHHHH---c--CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-h
Q 042290 95 --VILQADAG--SVDVNDLNLLQLQLENQ---L--KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-G 164 (425)
Q Consensus 95 --~il~~l~~--~~~~~~~~~~~~~l~~~---l--~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~ 164 (425)
......+. .......+.....+... . .+.+-+|||||++.........+...+......+++|+|+... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00000000 00001112222222221 1 1334589999996655445555555554444557787777543 2
Q ss_pred hhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 165 VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 165 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
+...+......+.+.+++.++...++.+.+..... .-..+.+..+++.++|.+-.+....
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV----DYDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22223333367889999999999998886543221 1224778889999999876654433
No 19
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=1.2e-08 Score=98.20 Aligned_cols=194 Identities=16% Similarity=0.139 Sum_probs=115.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|.+.-++.|.+.+.... -...+.++|++|+||||+|+.+++...-...... .+...-.....+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHh
Confidence 578999999999999886532 3456799999999999999999885421111100 0000000001110
Q ss_pred HHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhh
Q 042290 98 QADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVS 166 (425)
Q Consensus 98 ~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~ 166 (425)
.... ........++..+.+... ..+++-++|+|+++......++.++..+......+++|++|.+ ..+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 0000 000001122222221111 1244569999999877766788888887776667777776654 3333
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
..+.+....+++.+++.++....+...+..... .-.++.+..|++.++|.|..+...
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 333333368999999999999888876533221 112366788999999988644333
No 20
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=1.1e-08 Score=96.60 Aligned_cols=181 Identities=13% Similarity=0.162 Sum_probs=120.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcc----cccCCCeEEEEEe-CCCCCHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR----VKKYFSFRAWAYV-SEDFDAVGI 92 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~----~~~~f~~~~wv~~-~~~~~~~~~ 92 (425)
.+++|.+..++.|.+++.... -.....++|+.|+|||++|+.+++... ...|.+...|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 468899999999999986532 346778999999999999999987431 2334555455432 22222222
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhhhccCC
Q 042290 93 TKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVSSMVTT 171 (425)
Q Consensus 93 ~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~~~~~~ 171 (425)
.+++...+... -..+++-++|+|+++..+...++.++..+.....++.+|++|.+. .+.....+
T Consensus 78 ir~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 78 IRNIIEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 22222222100 112456688899988788889999999999888888888887654 23222333
Q ss_pred CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 172 PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 172 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
....+++.+++.++....+.+..... .++.+..++..++|.|.-+...
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYNDI--------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 34789999999999988887654211 1244778899999998755433
No 21
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.00 E-value=2.2e-09 Score=93.28 Aligned_cols=183 Identities=24% Similarity=0.251 Sum_probs=102.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+|||.++-+..+.-++..... .+.....+.++|++|+||||||..+++.. ...|. +.+.. ...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~~---~~sg~-~i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANEL--GVNFK---ITSGP-AIE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHC--T--EE---EEECC-C-----------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhcc--CCCeE---eccch-hhh---------
Confidence 6799999988877655532111 12356789999999999999999999943 33331 22221 111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC--------C-----------CCcEEEE
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG--------L-----------PGSKIIV 158 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~--------~-----------~~~~ilv 158 (425)
...++...+.+ + +++.+|++|.++..+...-+.|+..+.++ + +-+-|=.
T Consensus 88 ----------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 88 ----------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp ----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred ----------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 11122222222 2 23558899999877655555544433221 1 1234557
Q ss_pred ecCChhhhhccCCC-CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhc
Q 042290 159 TTRNEGVSSMVTTP-GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLR 232 (425)
Q Consensus 159 TtR~~~v~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~ 232 (425)
|||...+..-+... +...+|+..+.+|-..++.+.+..-. -+-.++.+.+|+++|.|.|--..-+-..++
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 88886555444433 34568999999999999988764322 223347899999999999987766655544
No 22
>PRK04195 replication factor C large subunit; Provisional
Probab=98.99 E-value=5.5e-08 Score=97.26 Aligned_cols=248 Identities=17% Similarity=0.154 Sum_probs=141.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|+++.++.|.+|+..... +...+.+.|+|++|+||||+|+.++++.. +. .+-++.++..+. ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 5699999999999999865332 12367899999999999999999999542 22 233344432222 2223333
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh----HHHhccccccCCCCCCcEEEEecCCh-hhhh-ccCC
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY----DVRANLCKPFKAGLPGSKIIVTTRNE-GVSS-MVTT 171 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~----~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~~-~~~~ 171 (425)
....... .....++-+||||+++.... ..+..+...+.. .+..+|+|+.+. .... .+..
T Consensus 86 ~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 86 GEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred HHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhc
Confidence 2221110 00113567999999965322 345555555443 234566666432 2211 2222
Q ss_pred CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccC---CChHHHHHHHhhcc
Q 042290 172 PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDK---YDPKDWEDVLNSKI 248 (425)
Q Consensus 172 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~---~~~~~w~~~l~~~~ 248 (425)
....+.+.+++.++....+.+.+...... -..+....|++.++|....+......+..+ .+.+....+..
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~egi~----i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~--- 223 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGIE----CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR--- 223 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc---
Confidence 23679999999999998888776432211 123678889999999766554433333332 22333333322
Q ss_pred cCCCCCchhHHHHHHHhcC-CChHHHHHHHhhhccCCCCceecHHHHHHHHHHcCCccc
Q 042290 249 WDLDEDKSGIMRALRVSYY-YLPSHVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQH 306 (425)
Q Consensus 249 ~~~~~~~~~~~~~l~~sy~-~L~~~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~ 306 (425)
.+....++.++..-+. .-...+...+..+. ++. ..+..|+.+.+...
T Consensus 224 ---~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ---RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ---CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 1112346777776655 33334444332221 222 45778999988753
No 23
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=6.5e-08 Score=96.95 Aligned_cols=193 Identities=15% Similarity=0.118 Sum_probs=117.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||.+...+.|.+++.... -...+.++|+.|+||||+|+.+++...-....... .+..-.....+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~-------pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTST-------PCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCC-------CCccCHHHHHHh
Confidence 568999999999999996542 34678999999999999999998753211101000 000000011111
Q ss_pred HHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhh
Q 042290 98 QADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVS 166 (425)
Q Consensus 98 ~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~ 166 (425)
..-. ........+++.+.+... ..++.-++|||+++..+....+.++..+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 0000 000112233333322221 23566799999998877778888888887766677777777553 222
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHH
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKT 226 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 226 (425)
....+....+.+.+++.++....+.+.+.... ..-..+.+..|++.++|.+..+..
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg----I~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQ----IAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 22222337899999999999998887664322 112236778899999998754443
No 24
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.98 E-value=6.8e-08 Score=91.70 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=109.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEe--CCCCCHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYV--SEDFDAVGITKV 95 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 95 (425)
.+++|++..++.|..++... ..+.+.|+|++|+|||++|+.+++..... .+. ..++.+ +....... ...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~-~~~i~~~~~~~~~~~~-~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGE-DWR-ENFLELNASDERGIDV-IRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccc-cceEEeccccccchHH-HHH
Confidence 56899999999999998543 33457999999999999999998853211 121 122222 22211111 111
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhhhccCCCCc
Q 042290 96 ILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVSSMVTTPGA 174 (425)
Q Consensus 96 il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~~~~~~~~~ 174 (425)
.+..+..... .....+-++++|+++.........+...+......+.+|+++... .+.........
T Consensus 88 ~i~~~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 88 KIKEFARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 1111110000 001235689999996655555556666665555566777766432 22221222225
Q ss_pred eeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 175 AHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 175 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
.+++.+++.++...++...+....- .-.++.+..+++.++|.+.-+...
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999888887643221 122367888999999987764333
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=1.4e-08 Score=104.61 Aligned_cols=184 Identities=16% Similarity=0.134 Sum_probs=118.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCC-------------------CeE
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYF-------------------SFR 78 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f-------------------~~~ 78 (425)
.++||.+.-++.|.+++.... -...+.++|+.|+||||+|+.+++...-.... ...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 578999999999999986532 33456899999999999999999854321111 111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEE
Q 042290 79 AWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKII 157 (425)
Q Consensus 79 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~-~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~il 157 (425)
+++.......+ ++..++.+.+.. -..++.-++|||+++.......+.|+..+......+++|
T Consensus 91 iEidAas~~kV-----------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 91 IEVDAASRTKV-----------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EEeccccccCH-----------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 11111100011 111111211111 123567799999999888889999988887766677766
Q ss_pred EecCC-hhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 158 VTTRN-EGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 158 vTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
++|.+ ..+...+.+....+.+.+|+.++...++.+.+.... .....+.+..|++.++|.|.-+..+
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 66544 444333233337899999999999999988653321 1122367888999999988644444
No 26
>PRK06893 DNA replication initiation factor; Validated
Probab=98.97 E-value=4.7e-09 Score=94.38 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=94.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
.+.+.|+|++|+|||+|++.+++... .....+.|+.+.... .... .+.+.+. +.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~y~~~~~~~---~~~~--------------------~~~~~~~-~~ 92 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYL--LNQRTAIYIPLSKSQ---YFSP--------------------AVLENLE-QQ 92 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEeeHHHhh---hhhH--------------------HHHhhcc-cC
Confidence 35789999999999999999998532 223345677653110 0000 1111122 23
Q ss_pred EEEEEeCCCCCC-hHHHhc-cccccCCC-CCCcEEE-EecCC---------hhhhhccCCCCceeecCCCChhhHHHHHH
Q 042290 125 FLLVLDDMWSEN-YDVRAN-LCKPFKAG-LPGSKII-VTTRN---------EGVSSMVTTPGAAHSLGNLLRDGCLRIFV 191 (425)
Q Consensus 125 ~LLVlDdv~~~~-~~~~~~-l~~~l~~~-~~~~~il-vTtR~---------~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~ 191 (425)
-+|||||+|... ...|.. +...+... ..+..+| +|+.. ..+...+... ..+++++++.++.++++.
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g-~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG-EIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC-CeeeCCCCCHHHHHHHHH
Confidence 489999997532 234442 33323222 2345554 44543 1333333333 688999999999999999
Q ss_pred HhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhh
Q 042290 192 QHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLL 231 (425)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L 231 (425)
+.+....- .-.++...-|++++.|..-.+..+-..|
T Consensus 172 ~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 88864321 1223778889999998877776665544
No 27
>PTZ00202 tuzin; Provisional
Probab=98.96 E-value=2.6e-07 Score=87.75 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=105.7
Q ss_pred ccCCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 11 TTSSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 11 ~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
...|.+...|+||+.|+..|...|...+. ..++++.|+|++|+|||||++.+..... + ...+++.. +..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHH
Confidence 45566778999999999999999975443 3456999999999999999999987432 1 13333333 678
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHc-----C-CceEEEEEeCCCCCC-hHHHhccccccCCCCCCcEEEEecCCh
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQL-----K-NKKFLLVLDDMWSEN-YDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l-----~-~k~~LLVlDdv~~~~-~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
+++..++.+++-+. .....++...|.+.+ . +++.+|||-=-...+ ...+++... |.....-|+|++----+
T Consensus 324 ElLr~LL~ALGV~p-~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evple 401 (550)
T PTZ00202 324 DTLRSVVKALGVPN-VEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHHcCCCC-cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHh
Confidence 99999999999422 222233434333332 2 667777773221111 123333222 22222456777655444
Q ss_pred hhhhccC--CCCceeecCCCChhhHHHHHHHhh
Q 042290 164 GVSSMVT--TPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 164 ~v~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
.+..... ..-..|.+++++.++|..+-.+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 3222111 112578999999999988876653
No 28
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.95 E-value=6.8e-09 Score=93.43 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=103.7
Q ss_pred Ccccc--chhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 18 KEVYG--REKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 18 ~~~vG--R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
.+|++ .+..++.+.+++.. ...+.+.|+|++|+|||+||+.+++... ......+++++..-.. .
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~------~ 80 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQ------A 80 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHH------h
Confidence 45653 34457777777532 2346899999999999999999988432 2233455665432211 0
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChH-H-HhccccccCC-CCCCcEEEEecCChhh-------
Q 042290 96 ILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYD-V-RANLCKPFKA-GLPGSKIIVTTRNEGV------- 165 (425)
Q Consensus 96 il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~-~-~~~l~~~l~~-~~~~~~ilvTtR~~~v------- 165 (425)
. .. +...+.+ .-+|||||++..... . ...+...+.. ...+..+|+||+....
T Consensus 81 ~-------------~~----~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 81 D-------------PE----VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred H-------------HH----HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 0 00 1111222 238999999643321 2 2333333222 1233478888885321
Q ss_pred --hhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhh
Q 042290 166 --SSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLL 231 (425)
Q Consensus 166 --~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L 231 (425)
...+... ..+.+.+++.++...++...+.... ..-.++..+.|++.+.|+|..+..+...+
T Consensus 143 ~L~~r~~~~-~~i~l~~l~~~e~~~~l~~~~~~~~----~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 143 DLRTRLAWG-LVFQLPPLSDEEKIAALQSRAARRG----LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHhcC-eeEecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1112112 5789999999999999887543221 11223667888889999998887775543
No 29
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.94 E-value=1.7e-09 Score=101.04 Aligned_cols=293 Identities=19% Similarity=0.207 Sum_probs=185.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEE-EEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRA-WAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 122 (425)
..+.+.++|.|||||||++-.+.. +..-|.... ++.+.+-.+...+...+...++-... +.+.....+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~--~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ--PGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc--cchHHHHHHHHHHhh
Confidence 447899999999999999999887 345565544 45555444555555555555652211 112233445566678
Q ss_pred ceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhhhccCCCCceeecCCCChh-hHHHHHHHhhcCCC-Cc
Q 042290 123 KKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVSSMVTTPGAAHSLGNLLRD-GCLRIFVQHSLRRT-DF 200 (425)
Q Consensus 123 k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~~-~~ 200 (425)
++.++|+||...- .+.-..+...+..+...-.++.|+|.... .... ....+.+|+.. ++.++|...+.... ..
T Consensus 88 rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge-~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 88 RRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGE-VHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---cccc-ccccCCccccCCchhHHHHHHHHHhccce
Confidence 8999999998211 12222334444445556688999997522 1122 46677777765 78888887663322 11
Q ss_pred CCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCCChHHHHHHHhhcccCCCCC-------chhHHHHHHHhcCCChHHH
Q 042290 201 VAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYDPKDWEDVLNSKIWDLDED-------KSGIMRALRVSYYYLPSHV 273 (425)
Q Consensus 201 ~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~-------~~~~~~~l~~sy~~L~~~~ 273 (425)
............|+++..|.|++|..+++..+.- .+.+...-|......+.+. .......+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 2223334678889999999999999999988775 5555555444432222221 2457788999999999999
Q ss_pred HHHHhhhccCCCCceecHHHHHHHHHHcCCcccCCCCCcHHHHHHHHHHHHHhCCCcccccC-CcCeEEEchHHHHHHHH
Q 042290 274 KRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQHKTDGMEMEELGRKSFQVLHSRSFFQRSKI-DASRFLMHDLIHDLACW 352 (425)
Q Consensus 274 k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~~sll~~~~~-~~~~~~mH~lv~~~a~~ 352 (425)
+-.|..++.|...|... ...|.+-|-... .+.-.....+..|+++|++..... ....|+.-+-++.|+..
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999998877654 233444333210 122334455778899998865442 33456666667777665
Q ss_pred Hhcc
Q 042290 353 ASGE 356 (425)
Q Consensus 353 ~~~~ 356 (425)
+..+
T Consensus 313 eL~r 316 (414)
T COG3903 313 ELHR 316 (414)
T ss_pred HHHh
Confidence 5543
No 30
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=1.5e-07 Score=93.95 Aligned_cols=185 Identities=16% Similarity=0.098 Sum_probs=116.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc-------------------CCCeE
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK-------------------YFSFR 78 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~f~~~ 78 (425)
.+++|.+..++.|...+.... ....+.++|+.|+||||+|+.+++...-.. .|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 568999999999999986432 345678999999999999999987432100 12222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEE
Q 042290 79 AWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKII 157 (425)
Q Consensus 79 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~-~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~il 157 (425)
+++......... +...+.+.+.. -..+++-++|+|+++.......+.|+..+......+.+|
T Consensus 91 ieidaas~~gvd-----------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 91 IEIDAASRTGVE-----------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EEeecccccCHH-----------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 222221111111 11122222221 123566799999998877788888888888766666666
Q ss_pred -EecCChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh-HHHHhh
Q 042290 158 -VTTRNEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL-AAKTLG 228 (425)
Q Consensus 158 -vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~ 228 (425)
+||....+...+.+....+++.+++.++....+.+.+.... ....+..+..|++.++|.+. ++..+-
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg----i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN----INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45444434333333347899999999999888877543321 11223667889999999764 555443
No 31
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=1.5e-08 Score=101.31 Aligned_cols=197 Identities=13% Similarity=0.074 Sum_probs=118.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccC--CCeEEEEEeCCCCCHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY--FSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 95 (425)
.++||.+.-++.|.+++.... -...+.++|+.|+||||+|+.+++...-... -.... ......-.....
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHH
Confidence 568999999999999996543 3456789999999999999999875421100 00000 000000001111
Q ss_pred HHHH-----hc-CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChh
Q 042290 96 ILQA-----DA-GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEG 164 (425)
Q Consensus 96 il~~-----l~-~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~ 164 (425)
|... +. ........+++.+.+... ..++.-++|||+++..+...++.|+..+.....++++|++| ....
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 1000 00 000112233333333322 23556799999999888888899988887765666655544 4454
Q ss_pred hhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 165 VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 165 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
+...+.+....+.++.++.++..+.+.+.+.... .....+..+.|++.++|.|.-...+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg----i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG----IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4433333347899999999999998887653221 1112356788999999998654433
No 32
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.93 E-value=1.3e-09 Score=89.03 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=80.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccc---cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVK---KYFSFRAWAYVSEDFDAVGITKVILQADAGSVD-VNDLNLLQLQLENQ 119 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~l~~~ 119 (425)
+.+++.|+|++|+|||+++..++++.... ..-..++|+.+....+...+...++..++.... ..+...+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999999854211 013457799988877999999999999994433 36677777777777
Q ss_pred cCCc-eEEEEEeCCCCC-ChHHHhccccccCCCCCCcEEEEecCC
Q 042290 120 LKNK-KFLLVLDDMWSE-NYDVRANLCKPFKAGLPGSKIIVTTRN 162 (425)
Q Consensus 120 l~~k-~~LLVlDdv~~~-~~~~~~~l~~~l~~~~~~~~ilvTtR~ 162 (425)
+... ..+||||+++.- ....++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7654 459999999554 4444455544333 567788887765
No 33
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.1e-08 Score=99.53 Aligned_cols=195 Identities=14% Similarity=0.065 Sum_probs=117.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++...-....... .+.....-..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---PCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---ccCCCcHHHHHHccCC
Confidence 568999999999999986532 23468999999999999999998854321111100 1111111111111100
Q ss_pred HHhc--CCCCCCCHHHH---HHHHHH-HcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChhhhhccC
Q 042290 98 QADA--GSVDVNDLNLL---QLQLEN-QLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEGVSSMVT 170 (425)
Q Consensus 98 ~~l~--~~~~~~~~~~~---~~~l~~-~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~v~~~~~ 170 (425)
..+. ........+++ .+.+.. ...++.-++|||+++......++.|+..+........+|++| ....+...+.
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 0000 00011112222 222221 123566799999998888888999988887655566655444 4444444444
Q ss_pred CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHH
Q 042290 171 TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAA 224 (425)
Q Consensus 171 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 224 (425)
+....+.+.+++.++..+.+.+.+.... -.-.++....|++.++|.+.-.
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Eg----i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIEN----VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCChHHHH
Confidence 4446799999999999988887764322 1122467888999999988543
No 34
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=5.1e-08 Score=92.71 Aligned_cols=201 Identities=15% Similarity=0.140 Sum_probs=123.0
Q ss_pred CCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccC--CCeEEEEEeCCCCCHH
Q 042290 13 SSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY--FSFRAWAYVSEDFDAV 90 (425)
Q Consensus 13 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~ 90 (425)
.|.....++|.++..+.|...+.+.. .+..+.|+|+.|+||||+|..+++...-... +... ....+....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCC
Confidence 33445679999999999999996542 3457899999999999999998875321110 1111 001011111
Q ss_pred HHHHHHHHHhcC-------C--C------CCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCCChHHHhccccccCCC
Q 042290 91 GITKVILQADAG-------S--V------DVNDLNLLQLQLENQL-----KNKKFLLVLDDMWSENYDVRANLCKPFKAG 150 (425)
Q Consensus 91 ~~~~~il~~l~~-------~--~------~~~~~~~~~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~ 150 (425)
...+.+.....+ + . ..-..+++. .+.+.+ .++.-++|||+++..+....+.++..+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 122333221110 0 0 111233333 333333 356679999999988888888888888765
Q ss_pred CCCcEE-EEecCChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 151 LPGSKI-IVTTRNEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 151 ~~~~~i-lvTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
..+..+ ++|++...+.....+....+.+.+++.++...++.+..... . ..++.+..|++.++|.|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555554 45544444443344444789999999999999998743211 1 113557789999999998665443
No 35
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=2.9e-09 Score=105.85 Aligned_cols=196 Identities=16% Similarity=0.081 Sum_probs=118.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|.+..++.|.+++.... -...+.++|++|+||||+|+.+++...-.+.+...+|.|.+-. ........-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 468999999999999886532 3456799999999999999999885432222222233321100 0000000000
Q ss_pred HHhcCCCCCCCHHHHHHHHHHH-----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecC-ChhhhhccCC
Q 042290 98 QADAGSVDVNDLNLLQLQLENQ-----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTR-NEGVSSMVTT 171 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~-----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR-~~~v~~~~~~ 171 (425)
..+. .......+.+.+ +... ..+++-++|||+++......++.++..+......+.+|++|. ...+...+..
T Consensus 88 ~el~-~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 88 LEID-AASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred EEec-ccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 0000 001112222222 2221 224566999999987777788888888777655666555554 3444333434
Q ss_pred CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHH
Q 042290 172 PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAK 225 (425)
Q Consensus 172 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 225 (425)
....+++.+++.++...++.+.+....- ...++.+..|++.++|.+--+.
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 3478999999999999999887643221 1123678889999999986553
No 36
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=7.5e-09 Score=98.92 Aligned_cols=195 Identities=13% Similarity=0.112 Sum_probs=119.5
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEE------EEEeCCCCCHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRA------WAYVSEDFDAV 90 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~------wv~~~~~~~~~ 90 (425)
-.+++|.+...+.|.+.+.... -...+.++|+.|+||+++|..+++..--........ -..+....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c--- 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH--- 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---
Confidence 3679999999999999986542 345689999999999999998877432111100000 00000000
Q ss_pred HHHHHHHHHhcCC---------C------CCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCCChHHHhccccccCCC
Q 042290 91 GITKVILQADAGS---------V------DVNDLNLLQLQLENQL-----KNKKFLLVLDDMWSENYDVRANLCKPFKAG 150 (425)
Q Consensus 91 ~~~~~il~~l~~~---------~------~~~~~~~~~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~ 150 (425)
...+.+.....++ . ..-..+++. .+.+.+ .+.+.++|||+++..+....+.|+..+...
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 1111111111000 0 011233332 233333 255679999999988888888998888876
Q ss_pred CCCcEEEEecCCh-hhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 151 LPGSKIIVTTRNE-GVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 151 ~~~~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
..++.+|++|.+. .+...+.+....+.+.+++.++..+++........ .+....++..++|.|+....+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~--------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP--------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC--------HHHHHHHHHHcCCCHHHHHHHh
Confidence 6666666666553 44333444447899999999999999987642111 1223678999999998665543
No 37
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=7e-07 Score=85.36 Aligned_cols=201 Identities=15% Similarity=0.109 Sum_probs=126.2
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
|..+.+|+.++.++...|...-. +..+.-+.|+|.+|+|||+.++.+.+.......-...++|++....+...++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 44599999999999988865432 2334459999999999999999999955432222227899999999999999999
Q ss_pred HHHhc-CCCCCCCHHHHHHHHHHHcC--CceEEEEEeCCCCCChHHHhccccccCCCCC-CcE--EEEecCChhhhhccC
Q 042290 97 LQADA-GSVDVNDLNLLQLQLENQLK--NKKFLLVLDDMWSENYDVRANLCKPFKAGLP-GSK--IIVTTRNEGVSSMVT 170 (425)
Q Consensus 97 l~~l~-~~~~~~~~~~~~~~l~~~l~--~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~-~~~--ilvTtR~~~v~~~~~ 170 (425)
++.++ .+.......+....+.+.+. ++.+++|||++.......-+.+...+..... .++ +|..+-+......+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99997 33344555666666666664 5789999999943211110233333333222 343 333333332222221
Q ss_pred ----CC--CceeecCCCChhhHHHHHHHhhcCCCCc-CCCcchHHHHHHHHHhhCC
Q 042290 171 ----TP--GAAHSLGNLLRDGCLRIFVQHSLRRTDF-VAHQYLSEIGEKIVDRCNG 219 (425)
Q Consensus 171 ----~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~~~I~~~~~G 219 (425)
+. ...+..+|-+.+|-...+..++-..... ...++.-+.+..++...+|
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 11 1347889999999999999887433221 2233333444445555554
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=98.91 E-value=2.6e-08 Score=94.31 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCC-eEEEEEeCCCCCHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFS-FRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 96 (425)
.+++|.++.++.|.+++... +.+.+.++|++|+||||+|..+++... ...|. ..+-++.++..... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 56899999899888887542 334578999999999999999988532 12222 11212222222211 22222
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhhhccCCCCce
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVSSMVTTPGAA 175 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~~~~~~~~~~ 175 (425)
+..+...... ...++.-++|||+++.........+...+......+++++++.. ..+...+.+....
T Consensus 85 i~~~~~~~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 85 IKMFAQKKVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHHhcccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 2221100000 00234669999999877666666666666544456677776644 2222222222367
Q ss_pred eecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHH
Q 042290 176 HSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAA 224 (425)
Q Consensus 176 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 224 (425)
+++++++.++....+...+....- .-.++....|++.++|....+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi----~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKV----PYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 999999999999888877643221 112367888999999876443
No 39
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=5.6e-08 Score=96.41 Aligned_cols=194 Identities=16% Similarity=0.153 Sum_probs=118.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCe-EEEEEeCCCCCHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSF-RAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 96 (425)
.+++|.+.-++.|.+.+.... -...+.++|+.|+||||+|+.+++...-...... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 568999999999988875532 3467899999999999999999885432111100 000000000 000111
Q ss_pred HHHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEE-ecCChhh
Q 042290 97 LQADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIV-TTRNEGV 165 (425)
Q Consensus 97 l~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv-TtR~~~v 165 (425)
..... ........+++.+.+... ..+++-++|||+++......++.|+..+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 00000 001112233333333222 235667899999988777888888888877666666654 5555555
Q ss_pred hhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHH
Q 042290 166 SSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAA 224 (425)
Q Consensus 166 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 224 (425)
...+......+++.+++.++....+.+.+..... .-.++.+..|++.++|.+.-+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 4444444367999999999999999887743321 112366788999999987544
No 40
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=2.3e-07 Score=91.73 Aligned_cols=202 Identities=17% Similarity=0.149 Sum_probs=119.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccC-------------------CCeE
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY-------------------FSFR 78 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~-------------------f~~~ 78 (425)
.++||.+.....|...+.... -...+.++|++|+||||+|+.+++...-... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 568999998888888875432 3356899999999999999999875321110 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEE
Q 042290 79 AWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKII 157 (425)
Q Consensus 79 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~-~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~il 157 (425)
..++.........+ +.+... ... -..+++-++|+|+++.......+.++..+......+.+|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~----------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDA----------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHH----------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 12221111111111 111111 110 122456799999997655556667777766544455555
Q ss_pred EecCC-hhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCC-ChhHHHHhhhhhcc--
Q 042290 158 VTTRN-EGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNG-SPLAAKTLGGLLRD-- 233 (425)
Q Consensus 158 vTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~~~~~~L~~-- 233 (425)
++|.+ ..+...+......+.+.+++.++....+.+.+..... .-.++.+..|++.++| .+.++..+-.+...
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~ 227 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQVWKFSE 227 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 44433 3444444444478999999999999988887643221 1223677889998865 46777777654332
Q ss_pred -CCChHHHHHHHh
Q 042290 234 -KYDPKDWEDVLN 245 (425)
Q Consensus 234 -~~~~~~w~~~l~ 245 (425)
.-+.+....++.
T Consensus 228 ~~It~e~V~~~l~ 240 (472)
T PRK14962 228 GKITLETVHEALG 240 (472)
T ss_pred CCCCHHHHHHHHc
Confidence 234555555543
No 41
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.85 E-value=2.6e-09 Score=92.86 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=34.3
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccc
Q 042290 19 EVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVK 72 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~ 72 (425)
.||||++++++|...|... ..+..+.+.|+|++|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999522 23466899999999999999999998855433
No 42
>PF13173 AAA_14: AAA domain
Probab=98.85 E-value=6.2e-09 Score=84.70 Aligned_cols=120 Identities=21% Similarity=0.133 Sum_probs=78.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
+++.|.|+.|+|||||+++++++.. ....+++++..+....... +.+ ..+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA---------------DPD-LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh---------------hhh-hHHHHHHhhccCCc
Confidence 5899999999999999999998533 3345677765543221100 000 22333333334678
Q ss_pred EEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhhh-----ccCCCCceeecCCCChhhH
Q 042290 126 LLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVSS-----MVTTPGAAHSLGNLLRDGC 186 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~-----~~~~~~~~~~l~~L~~~ea 186 (425)
+++||++. ....|......+....+..+|++|+.+..... .+......+++.||+..|-
T Consensus 64 ~i~iDEiq--~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQ--YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhh--hhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 99999994 44577777777766656789999999864442 2222235688999988763
No 43
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.84 E-value=2.7e-08 Score=82.54 Aligned_cols=124 Identities=20% Similarity=0.163 Sum_probs=72.2
Q ss_pred ccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042290 21 YGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQAD 100 (425)
Q Consensus 21 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 100 (425)
+||+..+..+...+... ..+.+.|+|++|+|||+|++.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47889999999988543 335799999999999999999998543 222345666655433322211111000
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHH---HhccccccCCC---CCCcEEEEecCCh
Q 042290 101 AGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDV---RANLCKPFKAG---LPGSKIIVTTRNE 163 (425)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~---~~~l~~~l~~~---~~~~~ilvTtR~~ 163 (425)
............++.+||+||++...... +..+...+... ..+..+|+||...
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 00111122234567899999996432222 22222222221 3577888888865
No 44
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=7.5e-08 Score=97.62 Aligned_cols=194 Identities=15% Similarity=0.124 Sum_probs=118.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||.+.-++.|.+.+.... -...+.++|+.|+||||+|+.+++...-...+.. ..+..-.....|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHH
Confidence 568999999999999886532 3355789999999999999999885421111000 0000001111111
Q ss_pred HHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhh
Q 042290 98 QADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVS 166 (425)
Q Consensus 98 ~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~ 166 (425)
..-. ........+++.+.+... ..++.-++|||+++.......+.|+..+......+++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 1000 000011223332222211 2356679999999988888899998888876667766655544 4443
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
..+.+....+.+.+++.++....+.+.+.... ....++....|++.++|.+.-+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~----i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQ----IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33333347899999999999999887653221 1112366778999999988744443
No 45
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=2.1e-07 Score=94.20 Aligned_cols=195 Identities=16% Similarity=0.106 Sum_probs=115.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-..... +..+... .....+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVC----QSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCccc----HHHHHHh
Confidence 568999999999999986532 345789999999999999999988532111100 0000000 0000000
Q ss_pred HH-----hc-CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhh
Q 042290 98 QA-----DA-GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVS 166 (425)
Q Consensus 98 ~~-----l~-~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~ 166 (425)
.. +. ........+.+.+.+... ..+++-++|||+++.......+.|+..+......+++|++|.+ ..+.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 00 000111222333322211 1245679999999877766677788777665556677766644 3222
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
..+.+....+.+.+++.++....+.+.+..... .-..+.+..|++.++|.+.-+..+.
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 222222257888999999999999877643221 1223678889999999986554443
No 46
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=5.6e-07 Score=91.17 Aligned_cols=197 Identities=15% Similarity=0.114 Sum_probs=117.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCC--CeEEEEEeCCCCCHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYF--SFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 95 (425)
.++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+++...-.... ..... ..+..-.....
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 568999998999999986542 34567999999999999999997643211100 00000 00000011111
Q ss_pred HHHHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChh
Q 042290 96 ILQADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEG 164 (425)
Q Consensus 96 il~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~ 164 (425)
|...-. ........++..+.+... ..++.-++|||+++......++.++..+......+++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 100000 000112233333333221 12445589999999888888899988887766666666555 4343
Q ss_pred hhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 165 VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 165 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
+.....+....+++++++.++....+.+.+..... ....+.+..|++.++|.+.-+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 43333333378999999999999988876543221 112366788999999987555444
No 47
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.82 E-value=1.5e-07 Score=82.01 Aligned_cols=149 Identities=14% Similarity=0.148 Sum_probs=94.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccc-------------------CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKK-------------------YFSFRAWAYVSEDFDAVGITKVILQADAGSVD 105 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 105 (425)
...+.++|+.|+|||++|+.+.+...-.. .+....++.....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~------------------- 74 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ------------------- 74 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-------------------
Confidence 46789999999999999999877532111 1111122211111
Q ss_pred CCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhhhccCCCCceeecCC
Q 042290 106 VNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVSSMVTTPGAAHSLGN 180 (425)
Q Consensus 106 ~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~~~~~~~~~~~~l~~ 180 (425)
....+++...+... ..+.+-++|+||++.......+.++..+......+.+|++|++. .+...+......+++.+
T Consensus 75 ~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~ 154 (188)
T TIGR00678 75 SIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPP 154 (188)
T ss_pred cCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCC
Confidence 11122222211111 12456789999997777777788888887766667777766543 33333333347899999
Q ss_pred CChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh
Q 042290 181 LLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL 222 (425)
Q Consensus 181 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 222 (425)
++.++..+.+.+.. . .++.+..|++.++|.|.
T Consensus 155 ~~~~~~~~~l~~~g---i-------~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 155 LSEEALLQWLIRQG---I-------SEEAAELLLALAGGSPG 186 (188)
T ss_pred CCHHHHHHHHHHcC---C-------CHHHHHHHHHHcCCCcc
Confidence 99999999998861 1 13678899999999985
No 48
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.1e-07 Score=91.79 Aligned_cols=182 Identities=12% Similarity=0.060 Sum_probs=113.4
Q ss_pred CccccchhhHHHHHHHhhCCCC----CCCCCcEEEEEEecCCchHHHHHHHHhcCccccc------------------CC
Q 042290 18 KEVYGREKDKEAIVGLLLGDDL----NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK------------------YF 75 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~----~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~------------------~f 75 (425)
.+++|.+.-++.|.+++..... .+.+-...+.++|++|+|||++|..+++...-.. .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4689999999999999976531 0011356789999999999999999876321110 01
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCC
Q 042290 76 SFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGL 151 (425)
Q Consensus 76 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~ 151 (425)
+...++.... .....+++.+.+... ..+++-++|||+++..+....+.|+..+....
T Consensus 85 pD~~~i~~~~-------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 85 PDVRVVAPEG-------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CCEEEecccc-------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 1111221110 111122222222111 12455688999998887777777888777666
Q ss_pred CCcEEEEecCC-hhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 152 PGSKIIVTTRN-EGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 152 ~~~~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
.+..+|++|.+ ..+...+.+....+.+.+++.++....+..... . .++.+..++..++|.|.....+
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 66666655554 444444444447899999999999988875321 0 1255778999999999755443
No 49
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=3.7e-07 Score=89.91 Aligned_cols=183 Identities=17% Similarity=0.145 Sum_probs=116.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccc-------------------cCCCeE
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVK-------------------KYFSFR 78 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~-------------------~~f~~~ 78 (425)
.++||.+.-++.|.+.+.... -...+.++|+.|+||||+|+.+++...-. +.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 568999999999998886532 34578999999999999999987632100 111223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEE
Q 042290 79 AWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIV 158 (425)
Q Consensus 79 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv 158 (425)
+.++.........+ +.++..... .-..++.-++|+|+++.......+.|+..+....+.+++|+
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 33333222222221 122211110 00124566899999987777778888888887767777666
Q ss_pred ecC-ChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHH
Q 042290 159 TTR-NEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAK 225 (425)
Q Consensus 159 TtR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 225 (425)
+|. ...+...+......+.+.+++.++....+.+.+..... .-.++.+..|++.++|.+..+.
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 553 34444433333478999999999999998887643221 1223667889999999876443
No 50
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=6.8e-08 Score=94.13 Aligned_cols=200 Identities=14% Similarity=0.122 Sum_probs=115.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEE-eCCCCCHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAY-VSEDFDAVGITKVI 96 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 96 (425)
.+++|.+.-++.|.+++.... -...+.++|++|+||||+|..+++...-........|.. ...+...-.....+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 578999999999999886432 334588999999999999999887442211111111110 00000000111111
Q ss_pred HHHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChhh
Q 042290 97 LQADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEGV 165 (425)
Q Consensus 97 l~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~v 165 (425)
..... ........+++.+..... ..+++-++|+|+++......++.++..+....+.+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 11000 000111133333322221 12456689999998777778888888887766666666555 43433
Q ss_pred hhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHH
Q 042290 166 SSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKT 226 (425)
Q Consensus 166 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 226 (425)
...+......+++.+++.++....+...+.... ..-.++.+..|++.++|.+--+..
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g----~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEG----ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 332222225788999999999888887653221 112237788999999998864444
No 51
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=2.8e-07 Score=92.02 Aligned_cols=181 Identities=17% Similarity=0.119 Sum_probs=115.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc-------------------CCCeE
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK-------------------YFSFR 78 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~f~~~ 78 (425)
.++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+++...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 568999999999999996542 345678999999999999999988542111 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCc
Q 042290 79 AWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGS 154 (425)
Q Consensus 79 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~ 154 (425)
+.+..... ...++..+.+... ..++.-++|||+++.......+.++..+......+
T Consensus 91 ~eidaas~--------------------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 91 FEVDAASR--------------------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred EEEccccc--------------------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 22222111 2222222222211 12455689999998888788888888887766677
Q ss_pred EEEEecC-ChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 155 KIIVTTR-NEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 155 ~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
++|++|. ...+...+.+....+++.+++.++....+.+.+..... .-..+.+..|++.++|.+.-+..+
T Consensus 151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 7666553 33333223333367889999999988877666533221 112356778999999988654443
No 52
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.78 E-value=2.9e-07 Score=88.82 Aligned_cols=185 Identities=13% Similarity=0.089 Sum_probs=113.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc--------------------CCCe
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK--------------------YFSF 77 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~--------------------~f~~ 77 (425)
.+++|.+..++.|.+++.... -...+.++|++|+|||++|+.+++...-.. +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 568999999999999885432 345788999999999999998876432110 122
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEE
Q 042290 78 RAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKII 157 (425)
Q Consensus 78 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~il 157 (425)
.+++......... ....+...+.. .-..+++-++|+|+++.......+.++..+......+.+|
T Consensus 88 ~~~~~~~~~~~~~-~~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 88 VIEIDAASNNGVD-DIREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred EEEeeccccCCHH-HHHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 1222221111111 11122221110 0012445689999996666566777777776555666766
Q ss_pred EecCCh-hhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 158 VTTRNE-GVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 158 vTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
++|.+. .+...+......+++.+++.++...++...+..... .-.++.+..+++.++|.|..+....
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI----KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 666543 233222222367889999999999988876643221 1123678889999999987665544
No 53
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=1.5e-07 Score=94.18 Aligned_cols=196 Identities=14% Similarity=0.152 Sum_probs=114.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|++..++.|.+++.... ....+.++|+.|+||||+|+.+++...-.. |.... ....-.....+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 578999999999999885532 346788999999999999999987532111 11100 001111111111
Q ss_pred HHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChhhh
Q 042290 98 QADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEGVS 166 (425)
Q Consensus 98 ~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~v~ 166 (425)
.... ........+++...+... ..+++-++|+|+++......+..|+..+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 1100 000011222222221111 11334479999998777778888888777665566665555 434443
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh-HHHHhhh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL-AAKTLGG 229 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~~ 229 (425)
..+......+++.+++.++....+...+..... .-..+.+..+++.++|.+. |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 333333368999999999999888876533211 1113667889999999765 4444443
No 54
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=8.4e-07 Score=89.37 Aligned_cols=198 Identities=14% Similarity=0.141 Sum_probs=116.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-....... .+..-...+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-------pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-------PCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-------CCcccHHHHHHh
Confidence 568999998899998886532 34678899999999999999998854311110000 000001111111
Q ss_pred HHhcC------CCCCCCHHHHHH---HHHH-HcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhh
Q 042290 98 QADAG------SVDVNDLNLLQL---QLEN-QLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVS 166 (425)
Q Consensus 98 ~~l~~------~~~~~~~~~~~~---~l~~-~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~ 166 (425)
..... .......+++.. .+.. -..+++-++|||+++.......+.|+..+........+|++|.+ ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 10000 000111222211 1111 12355679999999887777788888887665455666665544 4444
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh-hHHHHhhhhh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP-LAAKTLGGLL 231 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lai~~~~~~L 231 (425)
..+......+++.+++.++....+...+..... .-.++.+..|++.++|.+ .++..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333332367899999999999888875533211 122367888999999965 6777765544
No 55
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.75 E-value=1.2e-07 Score=85.28 Aligned_cols=175 Identities=13% Similarity=0.074 Sum_probs=99.0
Q ss_pred Cccc-cchhhH-HHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 18 KEVY-GREKDK-EAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 18 ~~~v-GR~~e~-~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
++|+ |+.++. ..+.++.... ...+.+.|+|++|+|||+||+.+++... ... ....+++...... .
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~ 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGP-----VADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhcc-----CCCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H
Confidence 4444 554443 4444444321 2345789999999999999999988532 112 2344554332110 0
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC-CCCc-EEEEecCChhhhh------
Q 042290 96 ILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG-LPGS-KIIVTTRNEGVSS------ 167 (425)
Q Consensus 96 il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-~~~~-~ilvTtR~~~v~~------ 167 (425)
+ ... ...-+||+||++..+...-..+...+... ..+. .+|+|++......
T Consensus 85 ----~-----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 85 ----F-----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----H-----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 011 22347999999644333333343333221 1233 4677776532211
Q ss_pred --ccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhc
Q 042290 168 --MVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLR 232 (425)
Q Consensus 168 --~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~ 232 (425)
.+... ..+++.+++.++-..++.+.+.... -.-.++....+++.+.|++..+..+...+.
T Consensus 143 ~sr~~~~-~~i~l~pl~~~~~~~~l~~~~~~~~----v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 143 RTRLGWG-LVYELKPLSDADKIAALKAAAAERG----LQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHhcC-eEEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 11112 5889999999887777766442211 112237788899999999999887776653
No 56
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.75 E-value=1.4e-07 Score=86.62 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=97.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 122 (425)
+..+.+.+||++|+||||||+.++...+... ..+|..+....-..-.+.|.++.. =...+..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq--------------~~~~l~k 221 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ--------------NEKSLTK 221 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH--------------HHHhhhc
Confidence 3567889999999999999999988433221 456766655444444444444322 0123457
Q ss_pred ceEEEEEeCCCCCChHHHhccccccCCCCCCcEEE--EecCChhhh--hccCCCCceeecCCCChhhHHHHHHHhhc---
Q 042290 123 KKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKII--VTTRNEGVS--SMVTTPGAAHSLGNLLRDGCLRIFVQHSL--- 195 (425)
Q Consensus 123 k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~il--vTtR~~~v~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--- 195 (425)
++.+|++|.++..+..+-+.+ |+.-.+|.-++ .||.+.... ..+-+...++.|++|+.++...++.+...
T Consensus 222 rkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 899999999976554444443 44444566544 466665321 11122237899999999999999987432
Q ss_pred CCCC---cCCCc---chHHHHHHHHHhhCCChh
Q 042290 196 RRTD---FVAHQ---YLSEIGEKIVDRCNGSPL 222 (425)
Q Consensus 196 ~~~~---~~~~~---~~~~~~~~I~~~~~G~PL 222 (425)
.... ..+.+ -...+.+-++..|.|-..
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 11121 124566777888888643
No 57
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2e-07 Score=93.62 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc-------------------CCCeE
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK-------------------YFSFR 78 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~f~~~ 78 (425)
.+++|.+.-++.|.+++.... -...+.++|+.|+||||+|+.+++...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 568999999999999986532 335678999999999999999987542111 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCc
Q 042290 79 AWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGS 154 (425)
Q Consensus 79 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~ 154 (425)
+++.... ....+++.+.+... ..+++-++|+|+++.......+.++..+......+
T Consensus 91 ~ei~~~~--------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 91 IEVDAAS--------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred eEeeccc--------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 2222111 11222222222211 13556799999998777777888888887765666
Q ss_pred EEEEecC-ChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh-HHHHh
Q 042290 155 KIIVTTR-NEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL-AAKTL 227 (425)
Q Consensus 155 ~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~ 227 (425)
.+|++|. ...+...+.+....+++.+++.++....+.+.+.... -...++.+..|++.++|.+. ++..+
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg----i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN----IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6665553 3333322222236889999999999988877653221 11123567889999999875 44444
No 58
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=3.4e-07 Score=92.83 Aligned_cols=198 Identities=14% Similarity=0.110 Sum_probs=119.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCC--eEEEEEeCCCCCHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFS--FRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 95 (425)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-..... ...+-.+. .-.-...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHHH
Confidence 568999999999999996542 345788999999999999999988542211110 00000000 0011111
Q ss_pred HHHHhcC------CCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChh
Q 042290 96 ILQADAG------SVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEG 164 (425)
Q Consensus 96 il~~l~~------~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~ 164 (425)
|...... .......+++.+.+... ..+++-++|+|+++.......+.|+..+.....++.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111100 01112233333322211 12445689999998777777888888887766677766555 4344
Q ss_pred hhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 165 VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 165 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
+...+.+....+.+.+++.++....+.+.+..... .-.++.+..|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43333333468999999999999999887643221 1123677889999999987655443
No 59
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=3.4e-07 Score=95.89 Aligned_cols=191 Identities=12% Similarity=0.043 Sum_probs=115.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-....... .++.. .....|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHH
Confidence 568999999999999986532 33567899999999999999998754311111000 00000 0000000
Q ss_pred HH-------hc-CCCCCCCHHHHHHHHHH----HcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecC-Chh
Q 042290 98 QA-------DA-GSVDVNDLNLLQLQLEN----QLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTR-NEG 164 (425)
Q Consensus 98 ~~-------l~-~~~~~~~~~~~~~~l~~----~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR-~~~ 164 (425)
.. +. ........+++.+.... -..++.-++|||+++.......+.|+..+......+.+|++|. ...
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 00 00011122333221111 1235566899999998888899999999888767776665554 344
Q ss_pred hhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHH
Q 042290 165 VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAA 224 (425)
Q Consensus 165 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 224 (425)
+...+.+....+++..++.++...++.+.+..... ....+.+..|++.++|.+..+
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv----~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV----PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 44444444478999999999998888776532211 112355678999999988433
No 60
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.71 E-value=2.4e-07 Score=95.87 Aligned_cols=177 Identities=19% Similarity=0.240 Sum_probs=101.9
Q ss_pred CccccchhhHH---HHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKE---AIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
.+|+|++..+. .|.+++.. +..+.+.|+|++|+||||||+.+++. ....| +.++......
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~~i---- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLAGV---- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhhhh----
Confidence 46899998774 56666643 24467889999999999999999984 33333 1111110000
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHc--CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEE--ecCCh--hhhhc
Q 042290 95 VILQADAGSVDVNDLNLLQLQLENQL--KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIV--TTRNE--GVSSM 168 (425)
Q Consensus 95 ~il~~l~~~~~~~~~~~~~~~l~~~l--~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv--TtR~~--~v~~~ 168 (425)
.+...........+ .+++.+|||||++..+....+.++..+. .+..+++ ||.+. .+...
T Consensus 91 ------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 91 ------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred ------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 01111111111111 2456799999998766666666665443 2444444 33432 12222
Q ss_pred cCCCCceeecCCCChhhHHHHHHHhhcCCCC---cCCCcchHHHHHHHHHhhCCChhHHHH
Q 042290 169 VTTPGAAHSLGNLLRDGCLRIFVQHSLRRTD---FVAHQYLSEIGEKIVDRCNGSPLAAKT 226 (425)
Q Consensus 169 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~---~~~~~~~~~~~~~I~~~~~G~PLai~~ 226 (425)
+.+....+.+++|+.++...++.+.+..... .....-.++....|++.+.|..--+.-
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln 216 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLN 216 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHH
Confidence 2222367999999999999999876531000 011122346778899999887554333
No 61
>PF14516 AAA_35: AAA-like domain
Probab=98.70 E-value=6.6e-06 Score=78.17 Aligned_cols=202 Identities=14% Similarity=0.124 Sum_probs=117.9
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC-----CCHH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED-----FDAV 90 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~ 90 (425)
+....|.|...-+++.+.+..+. ..+.|.|+-.+|||+|...+.+..... .+ .++++++... .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHH
Confidence 34445788866677777775432 489999999999999999998854322 33 4567766542 2455
Q ss_pred HHHHHHHHHhcCCC------------CCCCHHHHHHHHHHHc---CCceEEEEEeCCCCCC--h----HHHhccccccCC
Q 042290 91 GITKVILQADAGSV------------DVNDLNLLQLQLENQL---KNKKFLLVLDDMWSEN--Y----DVRANLCKPFKA 149 (425)
Q Consensus 91 ~~~~~il~~l~~~~------------~~~~~~~~~~~l~~~l---~~k~~LLVlDdv~~~~--~----~~~~~l~~~l~~ 149 (425)
.++..++..+.... ...........+.+.+ .+++.+|+||+++..- . +-+..++.....
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 56666655554111 1112223333344332 2689999999995311 1 111222211111
Q ss_pred CC-----CCcEEEEecCCh-hhhhcc-CC---CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCC
Q 042290 150 GL-----PGSKIIVTTRNE-GVSSMV-TT---PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNG 219 (425)
Q Consensus 150 ~~-----~~~~ilvTtR~~-~v~~~~-~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G 219 (425)
.. ...++++....+ ...... .+ .+..+.|++|+.+|...|+.++...-. ....++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~--------~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS--------QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC--------HHHHHHHHHHHCC
Confidence 10 112222222211 111111 11 136799999999999999987642211 1338899999999
Q ss_pred ChhHHHHhhhhhccC
Q 042290 220 SPLAAKTLGGLLRDK 234 (425)
Q Consensus 220 ~PLai~~~~~~L~~~ 234 (425)
+|..+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999764
No 62
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=6e-07 Score=90.56 Aligned_cols=195 Identities=12% Similarity=0.045 Sum_probs=116.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-...... -.++.. .....+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTA---TPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC---Cccccc----HHHHHhh
Confidence 568999999999999996532 3446789999999999999999875321111000 000000 0011111
Q ss_pred HHh-------c-CCCCCCCHHHHH---HHHHHH-cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChh
Q 042290 98 QAD-------A-GSVDVNDLNLLQ---LQLENQ-LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEG 164 (425)
Q Consensus 98 ~~l-------~-~~~~~~~~~~~~---~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~ 164 (425)
... . ........++.. +.+... ..++.-++|||+++.......+.|+..+......+.+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 000 0 000111222222 222111 12455689999998888888888888888766666666555 4444
Q ss_pred hhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh-HHHHhh
Q 042290 165 VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL-AAKTLG 228 (425)
Q Consensus 165 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~~ 228 (425)
+...+.+....+.+.+++.++..+.+.+.+..... .-..+.+..|++.++|.+. ++..+-
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ld 221 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLD 221 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44333333478999999999998888776543221 1123567788999999875 444443
No 63
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=7e-07 Score=86.47 Aligned_cols=183 Identities=11% Similarity=0.137 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccc------cCCCeEE-EEEeCCCCCHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVK------KYFSFRA-WAYVSEDFDAV 90 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~------~~f~~~~-wv~~~~~~~~~ 90 (425)
.+++|.+..++.+.+.+.... -.+.+.++|++|+|||++|..+++..... ..|...+ -+.........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 568999999999999986432 34688999999999999999997743211 1121111 11111111111
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChhhhhcc
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEGVSSMV 169 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~v~~~~ 169 (425)
. ...++..+.. .-..+++-++|+|+++......+..+...+......+.+|+++ ....+....
T Consensus 92 ~-i~~l~~~~~~---------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 92 D-IRNLIDQVRI---------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred H-HHHHHHHHhh---------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 1 1122211110 0012345689999996655556777766665544455555554 333333322
Q ss_pred CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHH
Q 042290 170 TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAK 225 (425)
Q Consensus 170 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 225 (425)
......++..+++.++....+...+....- .-.++.+..|++.++|.+-.+.
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~----~i~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGI----KFEDDALHIIAQKADGALRDAL 207 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHHHH
Confidence 222367899999999999888876643221 1123778889999999766443
No 64
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=8.2e-07 Score=90.75 Aligned_cols=196 Identities=14% Similarity=0.109 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-..... .......-.....+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 578999999999998886432 345678999999999999999987432111000 000111111222222
Q ss_pred HHhcC------CCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhh
Q 042290 98 QADAG------SVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVS 166 (425)
Q Consensus 98 ~~l~~------~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~ 166 (425)
..... .......+++.+.+... ..+++-++|||+++.......+.|+..+......+.+|+++.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 21110 00112223322222111 1245678999999777767778888777766566666665543 3333
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
..+......+.+.+++.++....+...+..... .-..+.+..|++.++|.+..+....
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl----~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI----NLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333333367889999999998888876543221 1123678889999999986554443
No 65
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=7.6e-07 Score=90.45 Aligned_cols=201 Identities=15% Similarity=0.128 Sum_probs=116.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEE-eCCCCCHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAY-VSEDFDAVGITKVI 96 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 96 (425)
.++||.+..+..|.+++.... -...+.++|+.|+||||+|+.+++...-........|.. .......-.....+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 578999999999999885432 335688999999999999999887542211111011110 00000000111111
Q ss_pred HHHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChhh
Q 042290 97 LQADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEGV 165 (425)
Q Consensus 97 l~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~v 165 (425)
...-. ........+++...+... ..+++-++|+|+++.......+.|+..+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 11000 000112233443332222 23445689999998777777888888887765666655444 44444
Q ss_pred hhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh-HHHHh
Q 042290 166 SSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL-AAKTL 227 (425)
Q Consensus 166 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~ 227 (425)
...+......+++.+++.++....+.+.+..... .-..+.+..|++.++|..- ++..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 4333333478999999999998888775532211 1123678889999999655 44433
No 66
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.65 E-value=5e-07 Score=81.54 Aligned_cols=155 Identities=11% Similarity=0.070 Sum_probs=91.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
+.+.|+|++|+|||+|++.+++... ..-..+.++.+..... ...+..+.+.+ --
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~-------------------~~~~~~~~~~~-----~d 99 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW-------------------FVPEVLEGMEQ-----LS 99 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh-------------------hhHHHHHHhhh-----CC
Confidence 5789999999999999999988433 2233456666532110 00111111211 13
Q ss_pred EEEEeCCCCCC-hHHHhccc-cccCCC-CCC-cEEEEecCChh---------hhhccCCCCceeecCCCChhhHHHHHHH
Q 042290 126 LLVLDDMWSEN-YDVRANLC-KPFKAG-LPG-SKIIVTTRNEG---------VSSMVTTPGAAHSLGNLLRDGCLRIFVQ 192 (425)
Q Consensus 126 LLVlDdv~~~~-~~~~~~l~-~~l~~~-~~~-~~ilvTtR~~~---------v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 192 (425)
+|+|||++... ...|.... ..+... ..| .++|+||+... +...+... .++++.+++.++-.+++.+
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g-~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG-QIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC-ceeeecCCCHHHHHHHHHH
Confidence 89999995422 12343322 222111 123 47999998642 12222222 6899999999999999887
Q ss_pred hhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhh
Q 042290 193 HSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLL 231 (425)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L 231 (425)
++.... -.-.++...-|++.+.|..-.+..+-..+
T Consensus 179 ~a~~~~----~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 179 RARLRG----FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHcC----CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 664321 11224778889999988777666555444
No 67
>PRK08727 hypothetical protein; Validated
Probab=98.64 E-value=5.6e-07 Score=81.11 Aligned_cols=172 Identities=15% Similarity=0.075 Sum_probs=96.9
Q ss_pred Cccccchh-hHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 18 KEVYGREK-DKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 18 ~~~vGR~~-e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
+.|++... .+..+..+..+. ....+.|+|++|+|||.|++.+++... .....+.|++..+ ....+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~------~~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~------~~~~~ 84 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQ------SSDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQA------AAGRL 84 (233)
T ss_pred hhccCCcHHHHHHHHHHHhcc------CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHH------hhhhH
Confidence 44665543 344444443221 224599999999999999999988532 2333556766432 11111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC-hHHHhc-cccccCC-CCCCcEEEEecCCh---------h
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN-YDVRAN-LCKPFKA-GLPGSKIIVTTRNE---------G 164 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~-~~~~~~-l~~~l~~-~~~~~~ilvTtR~~---------~ 164 (425)
. +.+.. + .+.-+|||||+.... ...|.. +...+.. ...+..+|+|++.. .
T Consensus 85 ~----------------~~~~~-l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 85 R----------------DALEA-L-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred H----------------HHHHH-H-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 1 11111 1 123489999995321 122322 2222211 12456799999863 1
Q ss_pred hhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHH
Q 042290 165 VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKT 226 (425)
Q Consensus 165 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~ 226 (425)
+...+... ..+++++++.++-..++.+++....- .-.++....|++.++|-.-.+..
T Consensus 147 L~SRl~~~-~~~~l~~~~~e~~~~iL~~~a~~~~l----~l~~e~~~~La~~~~rd~r~~l~ 203 (233)
T PRK08727 147 LRSRLAQC-IRIGLPVLDDVARAAVLRERAQRRGL----ALDEAAIDWLLTHGERELAGLVA 203 (233)
T ss_pred HHHHHhcC-ceEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHHHHH
Confidence 11122222 58999999999999999987643211 12236778888888876655533
No 68
>PRK09087 hypothetical protein; Validated
Probab=98.63 E-value=9.2e-07 Score=79.11 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=89.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
.+.+.|+|++|+|||+|++.+++... ..+++.. .+...++. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~--------------------~~~~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN--------------------AAAE-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH--------------------hhhc--
Confidence 35689999999999999999887421 2244322 11111111 1111
Q ss_pred EEEEEeCCCCC--ChHHHhccccccCCCCCCcEEEEecCCh---------hhhhccCCCCceeecCCCChhhHHHHHHHh
Q 042290 125 FLLVLDDMWSE--NYDVRANLCKPFKAGLPGSKIIVTTRNE---------GVSSMVTTPGAAHSLGNLLRDGCLRIFVQH 193 (425)
Q Consensus 125 ~LLVlDdv~~~--~~~~~~~l~~~l~~~~~~~~ilvTtR~~---------~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 193 (425)
-+|+|||+... +...+-.+...+.. .|..+|+|++.. .+...+... ..+++++++.++-.+++.+.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~g-l~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAA-TVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCC-ceeecCCCCHHHHHHHHHHH
Confidence 27888999532 22333333333332 366799998742 222223333 78999999999999999988
Q ss_pred hcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhh
Q 042290 194 SLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLL 231 (425)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L 231 (425)
+.... -.-.+++..-|++.+.|..-.+..+...|
T Consensus 166 ~~~~~----~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADRQ----LYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHcC----CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 74421 11224778889999998887777554443
No 69
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.60 E-value=6.8e-07 Score=91.55 Aligned_cols=202 Identities=19% Similarity=0.218 Sum_probs=115.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCC---CeEEEEEeCCC---CCHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYF---SFRAWAYVSED---FDAVG 91 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 91 (425)
.+++|++..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999999988877432 34579999999999999999998754322222 12334444321 12222
Q ss_pred HHHHH---------------HHHhc-------------------CCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh
Q 042290 92 ITKVI---------------LQADA-------------------GSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY 137 (425)
Q Consensus 92 ~~~~i---------------l~~l~-------------------~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~ 137 (425)
+...+ +...+ .....- ....+..+.+.+..+++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 11111 11111 000001 12345566666777777777666665555
Q ss_pred HHHhccccccCCCCCCcEEEE--ecCChh-hhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHH
Q 042290 138 DVRANLCKPFKAGLPGSKIIV--TTRNEG-VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIV 214 (425)
Q Consensus 138 ~~~~~l~~~l~~~~~~~~ilv--TtR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~ 214 (425)
..|..+...+....+...+++ ||++.. +...+......+.+.+++.++.+.++.+.+..... .-.++..+.|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v----~ls~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV----HLAAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHH
Confidence 566666655555444444444 555432 22222222257789999999999999987643211 11235666677
Q ss_pred HhhCCChhHHHHhhhh
Q 042290 215 DRCNGSPLAAKTLGGL 230 (425)
Q Consensus 215 ~~~~G~PLai~~~~~~ 230 (425)
+.+..-+.+++.++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 7666557777766544
No 70
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.60 E-value=3.4e-07 Score=88.44 Aligned_cols=183 Identities=15% Similarity=0.109 Sum_probs=100.6
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
.+...++.|+++++++|.+.+..+-. .+-..++-+.|+|++|+|||+||+.+++.. ...| +.+..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~- 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG- 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch-
Confidence 34446789999999999887743211 011234568999999999999999999843 2222 22211
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------ChH---HHhccccccCC--C
Q 042290 87 FDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------NYD---VRANLCKPFKA--G 150 (425)
Q Consensus 87 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~~~---~~~~l~~~l~~--~ 150 (425)
..+..... + .....+...+...-...+.+|+||+++.. +.. .+..++..+.. .
T Consensus 190 ---~~l~~~~~---g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 ---SELVRKYI---G-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred ---HHHHHHhh---h-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 11111110 0 01111122222222356789999998532 111 12223222221 1
Q ss_pred CCCcEEEEecCChh-hhhccC---CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 151 LPGSKIIVTTRNEG-VSSMVT---TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 151 ~~~~~ilvTtR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
..+..||.||.... +...+. .....+.+...+.++..++|..+...... .... ....+++.+.|.
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~----~~~~la~~t~g~ 327 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDV----DLEAIAKMTEGA 327 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccC----CHHHHHHHcCCC
Confidence 24667888887532 111111 11257899999999999999887644321 1111 145577777765
No 71
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=1.4e-06 Score=89.17 Aligned_cols=192 Identities=13% Similarity=0.143 Sum_probs=112.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccC-CCeEEE-EE---eCCCCCHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY-FSFRAW-AY---VSEDFDAVGI 92 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~-f~~~~w-v~---~~~~~~~~~~ 92 (425)
.+++|.+..++.|.+++.... -...+.++|+.|+|||++|+.+++...-... ..+... .| ....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 568999999999999996532 3466789999999999999999874321110 000000 00 00000000
Q ss_pred HHHHHHHhcCCCCCCCHHHHHH---HHHHH-cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEE-EecCChhhhh
Q 042290 93 TKVILQADAGSVDVNDLNLLQL---QLENQ-LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKII-VTTRNEGVSS 167 (425)
Q Consensus 93 ~~~il~~l~~~~~~~~~~~~~~---~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~il-vTtR~~~v~~ 167 (425)
.+ ........+++.+ .+... ..+++-++|+|+++......+..|+..+......+.+| +|+....+..
T Consensus 91 ------ei-daasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 91 ------EM-DAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred ------EE-eccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 00 0000111222222 22111 12566699999998777778888888877655555555 5544444443
Q ss_pred ccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh-HHHHh
Q 042290 168 MVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL-AAKTL 227 (425)
Q Consensus 168 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~ 227 (425)
.+......+.+.+++.++....+...+..... ....+.+..|++.++|.+. |+..+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33333368999999999999888875532211 1123567889999999765 44433
No 72
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.2e-06 Score=85.19 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccc--cc-----------------CCCeE
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV--KK-----------------YFSFR 78 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~--~~-----------------~f~~~ 78 (425)
.+++|.+.-+..|.+++.... -...+.++|+.|+||||+|+.++....- .. .+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 568999999999999996532 3356778999999999999998774321 00 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEE
Q 042290 79 AWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKII 157 (425)
Q Consensus 79 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~il 157 (425)
+++......... +...+.+.+... ..+++-++|+|+++.......+.++..+........+|
T Consensus 91 ~eidaas~~gvd-----------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 91 IEIDAASNRGID-----------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred EEEeCccCCCHH-----------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 122111111111 111111111111 13566799999997776667777777776655555555
Q ss_pred Eec-CChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 158 VTT-RNEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 158 vTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
++| +...+...+......+.+.+++.++....+...+-...- ....+.+..|++.++|.+..+....
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544 443333322222367899999999999888876543221 1123667889999999876544443
No 73
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=4.2e-06 Score=85.19 Aligned_cols=195 Identities=12% Similarity=0.125 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-...... .....-.....|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 578999999999999986532 3456789999999999999999875321111100 0000000001110
Q ss_pred HHhc------CCCCCCCHHHHHH---HHHHH-cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChhhh
Q 042290 98 QADA------GSVDVNDLNLLQL---QLENQ-LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEGVS 166 (425)
Q Consensus 98 ~~l~------~~~~~~~~~~~~~---~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~v~ 166 (425)
..-. ........+++.+ .+... ..++.-++|||+++.......+.|+..+......+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 0000 0000111222222 11111 12445689999998777777888888887765666666544 444444
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh-hHHHHhh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP-LAAKTLG 228 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lai~~~~ 228 (425)
..+.+....+.+.+++.++....+...+..... .-.++.+..|++.++|.. .++..+-
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 433333367889999999988888765432211 112366788999999966 4555543
No 74
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.57 E-value=1.7e-06 Score=78.93 Aligned_cols=207 Identities=15% Similarity=0.074 Sum_probs=120.0
Q ss_pred CCccccchh---hHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccC----CCeEEEEEeCCCCCH
Q 042290 17 EKEVYGREK---DKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY----FSFRAWAYVSEDFDA 89 (425)
Q Consensus 17 ~~~~vGR~~---e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~ 89 (425)
.+.+||-.. -++.|.++|..+. ..+.+.+.|+|.+|.|||++++++.+....... --.++.+.....++.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 455677543 3567777776554 356788999999999999999999874322111 114677788889999
Q ss_pred HHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHcCC-ceEEEEEeCCCCCC------hHHHhccccccCCCCCCcEEEEecC
Q 042290 90 VGITKVILQADAGS-VDVNDLNLLQLQLENQLKN-KKFLLVLDDMWSEN------YDVRANLCKPFKAGLPGSKIIVTTR 161 (425)
Q Consensus 90 ~~~~~~il~~l~~~-~~~~~~~~~~~~l~~~l~~-k~~LLVlDdv~~~~------~~~~~~l~~~l~~~~~~~~ilvTtR 161 (425)
..+...|+.+++.+ ........+.......++. +.-+||||.+++.- ....-..+..|.+.-.=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 99999999999933 2334444444444444432 33499999996521 1111222233333323344555555
Q ss_pred Chhhhh----ccCCCCceeecCCCChhh-HHHHHHHhh--cCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 162 NEGVSS----MVTTPGAAHSLGNLLRDG-CLRIFVQHS--LRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 162 ~~~v~~----~~~~~~~~~~l~~L~~~e-a~~Lf~~~~--~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
...-+- .+.+....+.|+....++ ...|+...- ..-.. ...-...+.++.|+..++|+.=-+..+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 421110 111112566676666553 444443321 11111 122334688999999999986555444
No 75
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=2e-06 Score=84.83 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=110.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc---------------------CCC
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK---------------------YFS 76 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---------------------~f~ 76 (425)
.+++|.+..++.|.+++.... -...+.++|++|+||||+|+.+++...-.. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 578999999999999986432 346688999999999999999877432110 011
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcE
Q 042290 77 FRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSK 155 (425)
Q Consensus 77 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~-~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ 155 (425)
.+++.......... ..++.+.+.. -..+++-++|+|+++.......+.|+..+......+.
T Consensus 92 -~~~i~g~~~~gid~-----------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 92 -VLEIDGASHRGIED-----------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred -eEEeeccccCCHHH-----------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 11111111111111 1111111110 1125567899999976666666777777776555666
Q ss_pred EEEecC-ChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh-HHHHh
Q 042290 156 IIVTTR-NEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL-AAKTL 227 (425)
Q Consensus 156 ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL-ai~~~ 227 (425)
+|++|. ...+...+......+++.+++.++....+...+-.... .-.++.+..|++.++|.+. ++..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666653 33333333333368999999999999888776532211 1123678889999999765 44443
No 76
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=2.6e-06 Score=84.84 Aligned_cols=182 Identities=14% Similarity=0.105 Sum_probs=116.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCC-------------------eE
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFS-------------------FR 78 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-------------------~~ 78 (425)
.+++|-+...+.|...+.... -..+..++|+.|+||||+|+.+++...-....+ ..
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 568999999999999985432 345678999999999999998877432111000 11
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCc
Q 042290 79 AWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGS 154 (425)
Q Consensus 79 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~ 154 (425)
+.+.... ....+++.+.+... ..++.-++|+|+++....+..+.|+..+......+
T Consensus 89 ~eldaas--------------------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t 148 (535)
T PRK08451 89 IEMDAAS--------------------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYV 148 (535)
T ss_pred EEecccc--------------------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCce
Confidence 1111111 11123333333221 11456689999998888888888888887766677
Q ss_pred EEEEecCC-hhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 155 KIIVTTRN-EGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 155 ~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
.+|++|.+ ..+...+.+....+++.+++.++....+.+.+..... .-.++.+..|++.++|.+.-+....
T Consensus 149 ~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 149 KFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred EEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 77766654 2332223333478999999999999988876543221 1223678889999999885554443
No 77
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.9e-06 Score=87.95 Aligned_cols=178 Identities=12% Similarity=0.121 Sum_probs=114.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccc---------------------cCCC
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVK---------------------KYFS 76 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~---------------------~~f~ 76 (425)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-. .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 568999999999999986532 34568899999999999999887743210 1222
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCC
Q 042290 77 FRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLP 152 (425)
Q Consensus 77 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~ 152 (425)
...+..... ...+++...+... ..+++-++|||+++......++.|+..+.....
T Consensus 92 -~~~ld~~~~--------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 92 -IHELDAASN--------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred -eEEeccccc--------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 112221111 1122222222111 123455889999988777788888888887666
Q ss_pred CcEEEE-ecCChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHH
Q 042290 153 GSKIIV-TTRNEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAK 225 (425)
Q Consensus 153 ~~~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 225 (425)
++.+|+ |+....+...+......+++.+++.++....+.+.+....- ....+.+..|++.++|...-+.
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 666655 44544454444444478999999999999888876533221 1123567889999999765443
No 78
>PRK05642 DNA replication initiation factor; Validated
Probab=98.57 E-value=9.7e-07 Score=79.59 Aligned_cols=156 Identities=21% Similarity=0.189 Sum_probs=91.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
...+.|+|++|+|||.|++.+++... ..-..++|++..+ +... ... +.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~-------------~~~----~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR-------------GPE----LLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh-------------hHH----HHHhhhhCC
Confidence 35789999999999999999987432 2223466776432 1110 011 222222222
Q ss_pred EEEEEeCCCCCC-hHHHhc-cccccCC-CCCCcEEEEecCChhh--h-------hccCCCCceeecCCCChhhHHHHHHH
Q 042290 125 FLLVLDDMWSEN-YDVRAN-LCKPFKA-GLPGSKIIVTTRNEGV--S-------SMVTTPGAAHSLGNLLRDGCLRIFVQ 192 (425)
Q Consensus 125 ~LLVlDdv~~~~-~~~~~~-l~~~l~~-~~~~~~ilvTtR~~~v--~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 192 (425)
+||+||+.... ...|.. +...+.. ...|..+|+|++...- . ..+.. +..+++.+++.++-..++.+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~-gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL-ALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc-CeeeecCCCCHHHHHHHHHH
Confidence 78899995321 224433 3333322 1246678998875321 1 11111 25788999999999999986
Q ss_pred hhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhh
Q 042290 193 HSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLL 231 (425)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L 231 (425)
++.... . .-.+++..-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~-~---~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG-L---HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 654321 1 1124777888888888776666555444
No 79
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=3.3e-06 Score=79.28 Aligned_cols=198 Identities=13% Similarity=0.110 Sum_probs=119.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccc-------------ccCCCeEEEEEeC
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV-------------KKYFSFRAWAYVS 84 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~-------------~~~f~~~~wv~~~ 84 (425)
.+++|.+..++.|.+.+.... -.....++|+.|+||+++|..+++..-- ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999986542 3478999999999999999888664311 1122334444311
Q ss_pred CCCCHHHHHHHHHHHhc---CCCCCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEE
Q 042290 85 EDFDAVGITKVILQADA---GSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKI 156 (425)
Q Consensus 85 ~~~~~~~~~~~il~~l~---~~~~~~~~~~~~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~i 156 (425)
-...-..+-...+...+ .....-..++.. .+.+.+ .+++-++|+|+++..+....+.|+..+....+..-|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 00000000000011111 001111222322 233332 345679999999888888888888888765533344
Q ss_pred EEecCChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 157 IVTTRNEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 157 lvTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
++|+....+...+.+....+.+.+++.++..+.+.+...... .......++..++|.|..+..+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHHH
Confidence 455555555555555557899999999999999988642211 01123578999999997665443
No 80
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=3.3e-06 Score=80.33 Aligned_cols=212 Identities=17% Similarity=0.121 Sum_probs=127.5
Q ss_pred CCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..+..++||+.|++.+.+++...-+ .+..+.+-|.|.+|.|||.+...++.+......-..++++++..-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3457799999999999999977653 45667899999999999999999988654322223568888777667788888
Q ss_pred HHHHHhc-CCCCCCCHHHHHHHHHHHcCC--ceEEEEEeCCCCCChHHHhccccccCC-CCCCcEEEEecCChhh-----
Q 042290 95 VILQADA-GSVDVNDLNLLQLQLENQLKN--KKFLLVLDDMWSENYDVRANLCKPFKA-GLPGSKIIVTTRNEGV----- 165 (425)
Q Consensus 95 ~il~~l~-~~~~~~~~~~~~~~l~~~l~~--k~~LLVlDdv~~~~~~~~~~l~~~l~~-~~~~~~ilvTtR~~~v----- 165 (425)
.|...+. .........+....+...... ..+|+|+|.++.-....-..+...+.+ .-+++++|+.---..+
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 8888773 111122224445555555443 368999999842211111223333332 2345666654432211
Q ss_pred -hhc----cCCCCceeecCCCChhhHHHHHHHhhcCCCCcC-CCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 166 -SSM----VTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFV-AHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 166 -~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
... +.-....+...|-+.++-.++|..+........ .+...+-.|++++.-.|-+--|+.+.-
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 111 122236788999999999999999875433221 112233334444444444444444443
No 81
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.54 E-value=2.4e-06 Score=76.19 Aligned_cols=266 Identities=22% Similarity=0.218 Sum_probs=144.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+|||.++-.+.|.-.+..... .+...-.+.++|++|.||||||.-+++...+ ++ -+..+...
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~----k~tsGp~l---------- 88 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGV--NL----KITSGPAL---------- 88 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--Ce----Eecccccc----------
Confidence 5699999888877666644332 3356778999999999999999999995432 11 11111111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCC--------CCCC-----------cEEEE
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKA--------GLPG-----------SKIIV 158 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~--------~~~~-----------~~ilv 158 (425)
....++...|.. |. +.=+|++|.++......-+-+...+.. .+++ +-|=.
T Consensus 89 ---------eK~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 89 ---------EKPGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred ---------cChhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 111222222222 11 223677888865443333322222211 1122 23447
Q ss_pred ecCChhhhhccCC-CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhccCCCh
Q 042290 159 TTRNEGVSSMVTT-PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYDP 237 (425)
Q Consensus 159 TtR~~~v~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~ 237 (425)
|||.-.+.+-+.. .+-+.+++--+.+|-.+...+.+..-. -+-.++.+.+|+++..|-|.-..-+-+.++.
T Consensus 158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD---- 229 (332)
T COG2255 158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPRIANRLLRRVRD---- 229 (332)
T ss_pred ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcHHHHHHHHHHHH----
Confidence 8887644433332 235788888999999999988773322 1122377899999999999766555544432
Q ss_pred HHHHHHHhhcccCCCCC-chhHHHHHHHhcCCChHHHHHHHhhhccCCCCceecHHHHHHHHHHcCCcccCCCCCcHHHH
Q 042290 238 KDWEDVLNSKIWDLDED-KSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYEFDERQIVLLWMAEGLLQHKTDGMEMEEL 316 (425)
Q Consensus 238 ~~w~~~l~~~~~~~~~~-~~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~ 316 (425)
+..+-.... .... .......|.+-=..|+.-.+..+..+.-...|-++..+.+...- | .+..+.|++
T Consensus 230 --fa~V~~~~~--I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~l---g-----e~~~TiEdv 297 (332)
T COG2255 230 --FAQVKGDGD--IDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAAL---G-----EDRDTIEDV 297 (332)
T ss_pred --HHHHhcCCc--ccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHh---c-----CchhHHHHH
Confidence 222211100 0000 01122223333333444444444444433334445544444321 1 123567777
Q ss_pred HHHHHHHHHhCCCccccc
Q 042290 317 GRKSFQVLHSRSFFQRSK 334 (425)
Q Consensus 317 ~~~~l~~L~~~sll~~~~ 334 (425)
-+-| |++.||+++..
T Consensus 298 ~EPy---Liq~gfi~RTp 312 (332)
T COG2255 298 IEPY---LIQQGFIQRTP 312 (332)
T ss_pred HhHH---HHHhchhhhCC
Confidence 7755 88999999886
No 82
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.53 E-value=3.8e-07 Score=82.39 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=61.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhc-CCCCCCCHH------HHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED--FDAVGITKVILQADA-GSVDVNDLN------LLQL 114 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~-~~~~~~~~~------~~~~ 114 (425)
....+.|.|++|+|||||++.++++.... +|+..+|+.+.+. .+..+++..+...+. ...+..... ...+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 33578999999999999999999976544 8999999997666 788889888854443 222222211 1112
Q ss_pred HHHHH-cCCceEEEEEeCCC
Q 042290 115 QLENQ-LKNKKFLLVLDDMW 133 (425)
Q Consensus 115 ~l~~~-l~~k~~LLVlDdv~ 133 (425)
..... -.+++++|++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22221 24789999999993
No 83
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.53 E-value=2.6e-06 Score=84.03 Aligned_cols=170 Identities=12% Similarity=0.053 Sum_probs=101.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
..+.|+|..|+|||.|++.+++.......-..+++++ ...+...+...+.... ...+.+.+.+.. .-
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~~-~d 208 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEICQ-ND 208 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhcc-CC
Confidence 4589999999999999999988433222223345544 3455566655554210 112233333333 34
Q ss_pred EEEEeCCCCCC--hHHHhccccccCCC-CCCcEEEEecCChh-h--------hhccCCCCceeecCCCChhhHHHHHHHh
Q 042290 126 LLVLDDMWSEN--YDVRANLCKPFKAG-LPGSKIIVTTRNEG-V--------SSMVTTPGAAHSLGNLLRDGCLRIFVQH 193 (425)
Q Consensus 126 LLVlDdv~~~~--~~~~~~l~~~l~~~-~~~~~ilvTtR~~~-v--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 193 (425)
+|||||+.... ....+.+...+... ..+..||+|+.... . ...+.. +-...+.+++.++..+++.++
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~-Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNM-GLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhC-CceeccCCcCHHHHHHHHHHH
Confidence 88999995432 12222333322221 23447888876531 1 111222 257889999999999999988
Q ss_pred hcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhh
Q 042290 194 SLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLL 231 (425)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L 231 (425)
+-...- ...-.++.+.-|++.++|.|-.+.-+...+
T Consensus 288 ~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 288 IKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 743221 012335788999999999999888776544
No 84
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.52 E-value=2.8e-06 Score=80.58 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=86.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|.+...+.+..++... ..+.++.++|++|+|||++|+.+++.. .. ....++.+. .... ..+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~~-~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRID-FVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccHH-HHHHHH
Confidence 67899999999999998643 235677789999999999999998843 11 123344333 1111 111111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-ChHHHhccccccCCCCCCcEEEEecCChh-hhhccCCCCce
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-NYDVRANLCKPFKAGLPGSKIIVTTRNEG-VSSMVTTPGAA 175 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-~~~~~~~l~~~l~~~~~~~~ilvTtR~~~-v~~~~~~~~~~ 175 (425)
..+... ..+.+.+-++|||+++.. ..+....+...+.....++.+|+||.... +...+......
T Consensus 89 ~~~~~~--------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 89 TRFAST--------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHHHHh--------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 111100 001134568999999654 22333344444544456778888886531 22222222256
Q ss_pred eecCCCChhhHHHHHHH
Q 042290 176 HSLGNLLRDGCLRIFVQ 192 (425)
Q Consensus 176 ~~l~~L~~~ea~~Lf~~ 192 (425)
+.+...+.++...++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77777777777666544
No 85
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=4.4e-06 Score=84.43 Aligned_cols=194 Identities=14% Similarity=0.098 Sum_probs=116.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-...... ..+....+ .+.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHH
Confidence 578999999999999996532 3467899999999999999999885421111100 00000000 01110
Q ss_pred HHhc------CCCCCCCHHHHHHHHHH----HcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhh
Q 042290 98 QADA------GSVDVNDLNLLQLQLEN----QLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVS 166 (425)
Q Consensus 98 ~~l~------~~~~~~~~~~~~~~l~~----~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~ 166 (425)
..-. ........+++.+.... -..+++-++|+|+++......++.|+..+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 0000 00001222333222211 12355668999999887777888888888776666777666543 3333
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
..+......+++.+++.++....+.+.+..... .-.++.+..|++.++|.+..+...
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 333333367899999999998888876643221 122367788999999988544333
No 86
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.51 E-value=6.3e-07 Score=94.98 Aligned_cols=182 Identities=15% Similarity=0.120 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc----CCCeEEE-EEeCCCCCHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK----YFSFRAW-AYVSEDFDAVGI 92 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~w-v~~~~~~~~~~~ 92 (425)
..++||+.+++++.+.|.... ...+.++|++|+|||++|+.+++...... -....+| +.++.-.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~----- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ----- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-----
Confidence 458999999999999986543 23567999999999999999988432111 0122333 2222100
Q ss_pred HHHHHHHhcCCCCCCCHH-HHHHHHHHHc-CCceEEEEEeCCCCCC-------hHHHhc-cccccCCCCCCcEEEEecCC
Q 042290 93 TKVILQADAGSVDVNDLN-LLQLQLENQL-KNKKFLLVLDDMWSEN-------YDVRAN-LCKPFKAGLPGSKIIVTTRN 162 (425)
Q Consensus 93 ~~~il~~l~~~~~~~~~~-~~~~~l~~~l-~~k~~LLVlDdv~~~~-------~~~~~~-l~~~l~~~~~~~~ilvTtR~ 162 (425)
.......+.+ .+...+...- .+++++|++|+++... ..+-.. +...+.. ...++|-||..
T Consensus 256 --------ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~ 325 (852)
T TIGR03345 256 --------AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTW 325 (852)
T ss_pred --------cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCH
Confidence 0000111111 2222222221 2468999999996421 111111 2222222 23567766665
Q ss_pred hhhhhc------cCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 163 EGVSSM------VTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 163 ~~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
.+.... +......+.+++++.++...++......-.....-.-..+....+++.+.+.
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 332211 1112268999999999999997544321111111112235556666666553
No 87
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.51 E-value=9.1e-07 Score=85.90 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=98.0
Q ss_pred CCCCccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
+...++.|+++++++|.+.+..+-. -+-..++-|.|+|++|+|||++|+.+++.. ... |+.+..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh--
Confidence 3345688999999999887643211 012345678999999999999999999843 222 222211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------ChHHHhccccc---cCC--CC
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------NYDVRANLCKP---FKA--GL 151 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~~~~~~~l~~~---l~~--~~ 151 (425)
..+.. .. .......+...+...-...+.+|+||+++.. +......+... +.. ..
T Consensus 199 --~~l~~----~~----~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 --SELVQ----KF----IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred --HHHhH----hh----ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11111 10 0111112222222222456789999999531 11111222222 221 12
Q ss_pred CCcEEEEecCChh-hhhccC---CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 152 PGSKIIVTTRNEG-VSSMVT---TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 152 ~~~~ilvTtR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
.+..||.||.... +...+- .....+.+++.+.++..++|..+.....- ....+ ...+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 3567777776532 222111 12357999999999999999887643221 11111 34566666664
No 88
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.51 E-value=1.8e-06 Score=79.41 Aligned_cols=162 Identities=12% Similarity=0.089 Sum_probs=84.4
Q ss_pred ccccchhhHHHHHHH---hhC------CCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 19 EVYGREKDKEAIVGL---LLG------DDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~---L~~------~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
.++|.+...+.|.+. ... ......+....+.++|++|+||||+|+.+++.......-....++.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478888776665433 211 0000123456788999999999999999987431111111112333221
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC--------hHHHhccccccCCCCCCcEEEEecC
Q 042290 90 VGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN--------YDVRANLCKPFKAGLPGSKIIVTTR 161 (425)
Q Consensus 90 ~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~--------~~~~~~l~~~l~~~~~~~~ilvTtR 161 (425)
..+... ..........+.+... . ..+|+||+++... .+....+...+........+++++.
T Consensus 83 ~~l~~~--------~~g~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGE--------YIGHTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred HHhhhh--------hccchHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 111111 0111112223333332 2 2489999996421 2234445555544444446666665
Q ss_pred Chhhhh------cc-CCCCceeecCCCChhhHHHHHHHhhc
Q 042290 162 NEGVSS------MV-TTPGAAHSLGNLLRDGCLRIFVQHSL 195 (425)
Q Consensus 162 ~~~v~~------~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~ 195 (425)
..+... .+ ......+.+++++.++-.+++.+.+.
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 432211 11 11125688999999999999987764
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.50 E-value=1.2e-06 Score=92.06 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=87.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc---CC-CeEEEEEeCCCCCHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK---YF-SFRAWAYVSEDFDAVGIT 93 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~ 93 (425)
..++||+++++.+.+.|.... ..-+.++|++|+|||++|+.+++...... .+ ...+|.. + ...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-~----~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-D----MGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-c----HHHHh
Confidence 368999999999999886543 23568999999999999999988542111 11 2334421 1 11111
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHc-CCceEEEEEeCCCCCC---------hHHHhccccccCCCCCCcEEEEecCCh
Q 042290 94 KVILQADAGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWSEN---------YDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 94 ~~il~~l~~~~~~~~~~~~~~~l~~~l-~~k~~LLVlDdv~~~~---------~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
. ......+.+.....+.+.+ ..++.+|++|+++.-. .+.-+.+...+.. ...++|-+|...
T Consensus 251 ----a---~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~ 321 (731)
T TIGR02639 251 ----A---GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYE 321 (731)
T ss_pred ----h---hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHH
Confidence 0 0111122233333333333 3467899999996211 1112223333322 224555555432
Q ss_pred hhh------hccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 164 GVS------SMVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 164 ~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
+.. ..+......+.++.++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 221 1122222679999999999999998654
No 90
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.49 E-value=1.8e-06 Score=76.91 Aligned_cols=165 Identities=17% Similarity=0.156 Sum_probs=93.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNK 123 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k 123 (425)
....+.|+|+.|+|||.|.+++++.......-..+++++ ..++...+...+.. ...+ .+...+.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~----~~~~----~~~~~~~~- 97 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD----GEIE----EFKDRLRS- 97 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT----TSHH----HHHHHHCT-
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc----ccch----hhhhhhhc-
Confidence 344579999999999999999998543222223456664 34455555554432 2222 23333443
Q ss_pred eEEEEEeCCCCCC-hHHHhc----cccccCCCCCCcEEEEecCChh---------hhhccCCCCceeecCCCChhhHHHH
Q 042290 124 KFLLVLDDMWSEN-YDVRAN----LCKPFKAGLPGSKIIVTTRNEG---------VSSMVTTPGAAHSLGNLLRDGCLRI 189 (425)
Q Consensus 124 ~~LLVlDdv~~~~-~~~~~~----l~~~l~~~~~~~~ilvTtR~~~---------v~~~~~~~~~~~~l~~L~~~ea~~L 189 (425)
-=+|+|||++.-. ...|.. +...+. ..|.++|+|++... +...+... -.+++.+++.++...+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G-l~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWG-LVVELQPPDDEDRRRI 174 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCS-EEEEE----HHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhc-chhhcCCCCHHHHHHH
Confidence 2389999995422 122332 222222 24668999996531 11222233 6899999999999999
Q ss_pred HHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhh
Q 042290 190 FVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGL 230 (425)
Q Consensus 190 f~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~ 230 (425)
+.+.+....-. -.++++.-|++.+.+..-.|.-+-..
T Consensus 175 l~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 175 LQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 99887543221 22477777888877776666555443
No 91
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.48 E-value=3.1e-07 Score=82.61 Aligned_cols=185 Identities=15% Similarity=0.151 Sum_probs=116.4
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEE-EEeCCCCCHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAW-AYVSEDFDAVGITKV 95 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~ 95 (425)
-.+++|.+..+.-|.+.+.. +..+....+|++|.|||+-|..+++...-.+.|.+++. .+++...... +...
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 35689999999999999966 25678999999999999999999886544455655443 2333322111 0000
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHc--CCce-EEEEEeCCCCCChHHHhccccccCCCCCCcEEEE-ecCChhhhhccCC
Q 042290 96 ILQADAGSVDVNDLNLLQLQLENQL--KNKK-FLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIV-TTRNEGVSSMVTT 171 (425)
Q Consensus 96 il~~l~~~~~~~~~~~~~~~l~~~l--~~k~-~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv-TtR~~~v~~~~~~ 171 (425)
...+.+.+........ ..++ -++|||+++.+..+.|..++..+......++.++ |+--..+-.-+.+
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 1111111111111000 0123 4889999999999999999999888766676554 4443333222222
Q ss_pred CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh
Q 042290 172 PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP 221 (425)
Q Consensus 172 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 221 (425)
....+..++|..++...-+..-+....- .-..+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCcH
Confidence 2356888999999888877776643322 122367788999998853
No 92
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=5.9e-06 Score=84.45 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=115.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-..... ... .....-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~~----~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PTP----EPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CCC----CCCcccHHHHHHh
Confidence 568999999999999986532 235788999999999999999988542111100 000 0011111222222
Q ss_pred HHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChhhh
Q 042290 98 QADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEGVS 166 (425)
Q Consensus 98 ~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~v~ 166 (425)
.... ........+++.+.+... ..+++-++|||+++....+..+.|+..+......+.+|++| ....+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 1111 001112233333333221 12455689999998877778888888887655556555544 333333
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
..+......+.+..++.++....+...+..... .-..+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi----~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI----EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 333333367888999999888877765533211 111256788999999988655433
No 93
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=4.2e-06 Score=78.99 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=99.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccc-------------------CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKK-------------------YFSFRAWAYVSEDFDAVGITKVILQADAGSV 104 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 104 (425)
-...+.++|+.|+|||++|..+++...-.. ..+...|+.-... .
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-----------------~ 83 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-----------------D 83 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-----------------C
Confidence 456788999999999999999877532111 0111222211000 0
Q ss_pred CCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhhhccCCCCceeecC
Q 042290 105 DVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVSSMVTTPGAAHSLG 179 (425)
Q Consensus 105 ~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~~~~~~~~~~~~l~ 179 (425)
..-..+++.+..... ..+++-++|||+++..+....+.++..+.....++.+|+||.+. .+...+.+....+.+.
T Consensus 84 ~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 84 KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 111223333322111 12334456789999988899999999888766777777777663 4444444444789999
Q ss_pred CCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 180 NLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 180 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
+++.+++.+.+....... .++.+..++..++|.|+....+
T Consensus 164 ~~~~~~~~~~L~~~~~~~--------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 164 LPSNEESLQWLQQALPES--------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CcCHHHHHHHHHHhcccC--------ChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999997753111 1244567889999999765544
No 94
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=8.9e-06 Score=82.49 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|.+..++.|.+++.... -...+.++|+.|+|||++|+.+++...-...-+. .+.+.-.....+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHh
Confidence 578999999999999996542 3456788999999999999999774321110000 0001001111111
Q ss_pred HHhc------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEE-ecCChhhh
Q 042290 98 QADA------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIV-TTRNEGVS 166 (425)
Q Consensus 98 ~~l~------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv-TtR~~~v~ 166 (425)
.... ........+++.+.+... ..++.-++|||+++......+..|+..+......+.+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 1100 000112222222222211 135567899999987777788888887776555555554 44444443
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHH
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAK 225 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 225 (425)
..+......+.+.+++.++....+...+....- .-..+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 333333367889999999998888776532211 1123667788889988776443
No 95
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.43 E-value=6.2e-06 Score=76.56 Aligned_cols=206 Identities=17% Similarity=0.156 Sum_probs=120.1
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
.+.|.+|+.++..+..++...++ .-+..|.|.|.+|+|||.+++++.+... -..+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 56789999999999999976543 3456679999999999999999999542 236899999999999999999
Q ss_pred HHHhc-CCCCCC-------CHHHHHHHHHH--HcC--CceEEEEEeCCCC---CChHHHhccccccCCCCCCcEEEEecC
Q 042290 97 LQADA-GSVDVN-------DLNLLQLQLEN--QLK--NKKFLLVLDDMWS---ENYDVRANLCKPFKAGLPGSKIIVTTR 161 (425)
Q Consensus 97 l~~l~-~~~~~~-------~~~~~~~~l~~--~l~--~k~~LLVlDdv~~---~~~~~~~~l~~~l~~~~~~~~ilvTtR 161 (425)
+...+ .+.+.. ...+....+.+ ... ++.++||||+++. .+..-...+...-.-.....-.|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 99985 222211 12222333333 222 4589999999942 111111111111111111233344443
Q ss_pred Chhhhhc---cCCC-CceeecCCCChhhHHHHHHHhhcCCCCcC-CCcchHHHHHHHHHhhCCChhHHHHhhhhh
Q 042290 162 NEGVSSM---VTTP-GAAHSLGNLLRDGCLRIFVQHSLRRTDFV-AHQYLSEIGEKIVDRCNGSPLAAKTLGGLL 231 (425)
Q Consensus 162 ~~~v~~~---~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~~~I~~~~~G~PLai~~~~~~L 231 (425)
....... ++.. ..++..+.-+.+|...++.+.-.+..... -..-+.-+..-....|+ -+-.+..++...
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~ 230 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLA 230 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 3211111 2222 25678888999999988876532211100 01111223344556666 555555555443
No 96
>CHL00181 cbbX CbbX; Provisional
Probab=98.43 E-value=5.8e-06 Score=76.70 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=87.4
Q ss_pred CccccchhhHHHHHHHh---hCC------CCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 18 KEVYGREKDKEAIVGLL---LGD------DLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L---~~~------~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
..++|-+..+++|.++. .-. ..........+.++|++|+|||++|+.+++.....+.-....|+.++.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR--- 99 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH---
Confidence 35788876666554332 111 000112234588999999999999999977432111111122444441
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC---------ChHHHhccccccCCCCCCcEEEEe
Q 042290 89 AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE---------NYDVRANLCKPFKAGLPGSKIIVT 159 (425)
Q Consensus 89 ~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~---------~~~~~~~l~~~l~~~~~~~~ilvT 159 (425)
..+.... .+ .........+... . .-+|+||+++.. ..+....|...+.....+..||++
T Consensus 100 -~~l~~~~---~g-----~~~~~~~~~l~~a-~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~a 167 (287)
T CHL00181 100 -DDLVGQY---IG-----HTAPKTKEVLKKA-M--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFA 167 (287)
T ss_pred -HHHHHHH---hc-----cchHHHHHHHHHc-c--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1222111 11 1112222233332 2 249999999532 122334445555554456778888
Q ss_pred cCChhhhhcc-------CCCCceeecCCCChhhHHHHHHHhhcC
Q 042290 160 TRNEGVSSMV-------TTPGAAHSLGNLLRDGCLRIFVQHSLR 196 (425)
Q Consensus 160 tR~~~v~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 196 (425)
+......... ......+.+++++.+|..+++...+..
T Consensus 168 g~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred CCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 7654332111 112357999999999999998887643
No 97
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.42 E-value=5.4e-07 Score=85.10 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=59.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC--CHHHHHHHHHHHhc-CCCCCCCHHHHH------HHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF--DAVGITKVILQADA-GSVDVNDLNLLQ------LQL 116 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~-~~~~~~~~~~~~------~~l 116 (425)
.-..|+|++|+||||||+.++++.... +|+..+|+.+.+.. +..+++..+...+- ...+........ +.-
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999976544 89999999988877 67777777764333 222222211111 111
Q ss_pred HHH-cCCceEEEEEeCCC
Q 042290 117 ENQ-LKNKKFLLVLDDMW 133 (425)
Q Consensus 117 ~~~-l~~k~~LLVlDdv~ 133 (425)
... -.++.+||++|++.
T Consensus 249 e~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 249 KRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHcCCCEEEEEEChH
Confidence 111 35789999999994
No 98
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.41 E-value=9.8e-07 Score=93.81 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=86.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc---C-CCeEEEEEeCCCCCHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK---Y-FSFRAWAYVSEDFDAVGIT 93 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~ 93 (425)
..++||+++++++.+.|.... ..-+.++|++|+|||++|..++....... . -...+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 458999999999999996543 23567999999999999999988532111 1 1234442 1 11111
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHH-HHHcCCceEEEEEeCCCCCC-------hHHHhccccccCCCCCCcEEEEecCChhh
Q 042290 94 KVILQADAGSVDVNDLNLLQLQL-ENQLKNKKFLLVLDDMWSEN-------YDVRANLCKPFKAGLPGSKIIVTTRNEGV 165 (425)
Q Consensus 94 ~~il~~l~~~~~~~~~~~~~~~l-~~~l~~k~~LLVlDdv~~~~-------~~~~~~l~~~l~~~~~~~~ilvTtR~~~v 165 (425)
+.......+.++....+ ...-..++.+|++|+++.-. ......++.+.... ...++|.+|...+.
T Consensus 247 ------~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey 319 (821)
T CHL00095 247 ------LAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEY 319 (821)
T ss_pred ------hccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHH
Confidence 11111122233332222 22223568999999995210 01112222222111 23466666655433
Q ss_pred hh------ccCCCCceeecCCCChhhHHHHHHHh
Q 042290 166 SS------MVTTPGAAHSLGNLLRDGCLRIFVQH 193 (425)
Q Consensus 166 ~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 193 (425)
.. .+......+.+...+.++...++...
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 22 12222367888888988888887643
No 99
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.38 E-value=7.7e-06 Score=72.38 Aligned_cols=130 Identities=23% Similarity=0.267 Sum_probs=79.5
Q ss_pred CCcccCCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 8 PLSTTSSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 8 ~~~~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
|.+.+.++.-..++|-+.+.+.|.+....--. +.....+.++|..|+|||+|++.+.+....++ .--|.+..
T Consensus 17 ~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k-- 88 (249)
T PF05673_consen 17 PIKHPDPIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK-- 88 (249)
T ss_pred ecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH--
Confidence 44455566678899999999988765533221 23456788999999999999999988543222 11222221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCC-CCChHHHhccccccCCC----CCCcEEEEecCC
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMW-SENYDVRANLCKPFKAG----LPGSKIIVTTRN 162 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~-~~~~~~~~~l~~~l~~~----~~~~~ilvTtR~ 162 (425)
.+..+...+.+.++. ...+++|++||+. +.....+..|...|..+ ..+..|.+||-.
T Consensus 89 ----------------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 89 ----------------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred ----------------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 122333444444442 4578999999984 34445666666655432 233445555543
Q ss_pred h
Q 042290 163 E 163 (425)
Q Consensus 163 ~ 163 (425)
.
T Consensus 151 R 151 (249)
T PF05673_consen 151 R 151 (249)
T ss_pred h
Confidence 3
No 100
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.38 E-value=2.6e-05 Score=68.89 Aligned_cols=182 Identities=14% Similarity=0.094 Sum_probs=108.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDL----NLLQLQLENQ 119 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~----~~~~~~l~~~ 119 (425)
+.+++.++|.-|+|||.+++....... +. ....-+--.+..+...+...+...+..+. .... +...+.+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~--~d-~~~~v~i~~~~~s~~~~~~ai~~~l~~~p-~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN--ED-QVAVVVIDKPTLSDATLLEAIVADLESQP-KVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC--CC-ceEEEEecCcchhHHHHHHHHHHHhccCc-cchhHHHHHHHHHHHHHH
Confidence 446999999999999999995544221 11 11221222344566777777777777422 2222 2222333332
Q ss_pred c-CCce-EEEEEeCCCCCChHHHhccccccCC---CCCCcEEEEecCChh-------hhhccCCCCce-eecCCCChhhH
Q 042290 120 L-KNKK-FLLVLDDMWSENYDVRANLCKPFKA---GLPGSKIIVTTRNEG-------VSSMVTTPGAA-HSLGNLLRDGC 186 (425)
Q Consensus 120 l-~~k~-~LLVlDdv~~~~~~~~~~l~~~l~~---~~~~~~ilvTtR~~~-------v~~~~~~~~~~-~~l~~L~~~ea 186 (425)
. ++++ ..+++|+++.......+.++..... ....-+|+.....+- +.......... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 2 4666 9999999977666666655433222 112234555444320 11111111133 89999999999
Q ss_pred HHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhh
Q 042290 187 LRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGL 230 (425)
Q Consensus 187 ~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~ 230 (425)
..++..+..+... ..+-...+....|.....|.|.+|+.++..
T Consensus 206 ~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999888755432 222233467788999999999999988754
No 101
>PRK06620 hypothetical protein; Validated
Probab=98.33 E-value=1e-05 Score=71.76 Aligned_cols=140 Identities=12% Similarity=0.030 Sum_probs=81.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
+.+.|+|++|+|||+|++.+++... . .++. ..... + ... ...-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~--------------------~-------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN--------------------E-------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc--------------------h-------hHH-hcCC
Confidence 6789999999999999999877432 1 2211 00000 0 001 1224
Q ss_pred EEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhh-------hhccCCCCceeecCCCChhhHHHHHHHhhcCCC
Q 042290 126 LLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGV-------SSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRT 198 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v-------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 198 (425)
+|++||++.........+...+.. .|..+|+|++.... ...+... -++++++++.++-..++.+.+....
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~e--~g~~ilits~~~p~~l~l~~L~SRl~~g-l~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTLPDLSSRIKSV-LSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHHh--cCCEEEEEcCCCccccchHHHHHHHhCC-ceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 789999953322222223222322 46689999985422 1112222 5899999999998888877764221
Q ss_pred CcCCCcchHHHHHHHHHhhCCChhHHHHhhh
Q 042290 199 DFVAHQYLSEIGEKIVDRCNGSPLAAKTLGG 229 (425)
Q Consensus 199 ~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 229 (425)
-.-.+++..-|++.+.|.--.+.-+-.
T Consensus 165 ----l~l~~ev~~~L~~~~~~d~r~l~~~l~ 191 (214)
T PRK06620 165 ----VTISRQIIDFLLVNLPREYSKIIEILE 191 (214)
T ss_pred ----CCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 112247778888888876655544443
No 102
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.32 E-value=6.1e-06 Score=76.59 Aligned_cols=162 Identities=17% Similarity=0.108 Sum_probs=86.7
Q ss_pred ccccchhhHHHHHHH---hhCCC----CC--CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 19 EVYGREKDKEAIVGL---LLGDD----LN--SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~---L~~~~----~~--~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
.++|-++..++|.++ +.... .+ .......+.++|++|+|||++|+.+++.....+......++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 578877766655443 21110 00 011223688999999999999987766432222222223444442
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC---------ChHHHhccccccCCCCCCcEEEEec
Q 042290 90 VGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE---------NYDVRANLCKPFKAGLPGSKIIVTT 160 (425)
Q Consensus 90 ~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~---------~~~~~~~l~~~l~~~~~~~~ilvTt 160 (425)
..+ ...+.. .........+.+. ..-+|+||++... ..+.+..+...+.....+.+||+++
T Consensus 99 ~~l----~~~~~g----~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~ 167 (284)
T TIGR02880 99 DDL----VGQYIG----HTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAG 167 (284)
T ss_pred HHH----hHhhcc----cchHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 122 111111 1112223333332 2358999999522 1233445555555555566777777
Q ss_pred CChhhhhccC-------CCCceeecCCCChhhHHHHHHHhhc
Q 042290 161 RNEGVSSMVT-------TPGAAHSLGNLLRDGCLRIFVQHSL 195 (425)
Q Consensus 161 R~~~v~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~~ 195 (425)
.......... .....+++++++.+|...++...+.
T Consensus 168 ~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred CcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 6432221111 1125799999999999999888763
No 103
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.30 E-value=8.3e-06 Score=87.11 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=85.9
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccC----CCeEEEE-EeCCCCCHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY----FSFRAWA-YVSEDFDAVGI 92 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~~wv-~~~~~~~~~~~ 92 (425)
..++||+.+++++...|.... ...+.++|++|+|||++|..+++....... ....+|. .++ .+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------AL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HH
Confidence 458999999999999996543 245668999999999999999885321111 1223332 211 11
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHc-C-CceEEEEEeCCCCCC-------hHHHhccccccCCCCCCcEEEEecCCh
Q 042290 93 TKVILQADAGSVDVNDLNLLQLQLENQL-K-NKKFLLVLDDMWSEN-------YDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 93 ~~~il~~l~~~~~~~~~~~~~~~l~~~l-~-~k~~LLVlDdv~~~~-------~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
. .......+.+.....+...+ . +++.+|++|+++... ..+...++.+.... ...++|.+|...
T Consensus 241 ~-------a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~ 312 (852)
T TIGR03346 241 I-------AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLD 312 (852)
T ss_pred h-------hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHH
Confidence 0 00011112222222222222 2 468999999996321 01122222222222 234566555544
Q ss_pred hhhh------ccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 164 GVSS------MVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 164 ~v~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
+... .+......+.+...+.++...++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 3321 111222568899999999999887653
No 104
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.28 E-value=2.6e-05 Score=76.58 Aligned_cols=164 Identities=17% Similarity=0.132 Sum_probs=93.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
...+.|+|++|+|||.|++.+++.......-..+++++. ..+...+...+.. ...+.....+ .+ .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~----~~~~~~~~~~----~~-~ 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRN----NKMEEFKEKY----RS-V 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHc----CCHHHHHHHH----Hh-C
Confidence 346899999999999999999985432211124556542 2334444444431 1223332222 22 2
Q ss_pred EEEEEeCCCCCChH-H-HhccccccCCC-CCCcEEEEecCCh--hh-------hhccCCCCceeecCCCChhhHHHHHHH
Q 042290 125 FLLVLDDMWSENYD-V-RANLCKPFKAG-LPGSKIIVTTRNE--GV-------SSMVTTPGAAHSLGNLLRDGCLRIFVQ 192 (425)
Q Consensus 125 ~LLVlDdv~~~~~~-~-~~~l~~~l~~~-~~~~~ilvTtR~~--~v-------~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 192 (425)
-+|||||++..... . ...+...+... ..+..+|+|+... .+ ...+.. +..+.+.+.+.++-..++.+
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~-g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEW-GLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccC-CeEEEeCCCCHHHHHHHHHH
Confidence 38999999542211 1 12222222211 1345688887642 11 111211 24789999999999999998
Q ss_pred hhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 193 HSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
.+..... .-.++....|++.+.|..-.+.-+-
T Consensus 280 ~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 280 KAEEEGL----ELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHcCC----CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 8754321 1124778889999998877655443
No 105
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.27 E-value=5e-06 Score=86.64 Aligned_cols=157 Identities=19% Similarity=0.195 Sum_probs=88.4
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc-C---CCeEEEEEeCCCCCHHHHHH
Q 042290 19 EVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK-Y---FSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~ 94 (425)
.++||+.+++++.+.|.... ...+.++|++|+|||++|+.+++...... . .++.+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 58999999999999997643 23457899999999999999987432111 1 13344421 11111
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHc-CCceEEEEEeCCCCC--------ChHHHhccccccCCCCCCcEEEEecCChhh
Q 042290 95 VILQADAGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWSE--------NYDVRANLCKPFKAGLPGSKIIVTTRNEGV 165 (425)
Q Consensus 95 ~il~~l~~~~~~~~~~~~~~~l~~~l-~~k~~LLVlDdv~~~--------~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v 165 (425)
+.......+.+.....+...+ ..++.+|+||+++.- .......++.++... ...++|-+|...+.
T Consensus 254 -----laG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~ 327 (758)
T PRK11034 254 -----LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEF 327 (758)
T ss_pred -----hcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHH
Confidence 111111122233322232222 345789999999531 112233333333322 23456655554433
Q ss_pred hhc------cCCCCceeecCCCChhhHHHHHHHhh
Q 042290 166 SSM------VTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 166 ~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
... +......+.+++.+.+++..++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 211 11122689999999999999998653
No 106
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=3.5e-05 Score=72.19 Aligned_cols=176 Identities=13% Similarity=0.080 Sum_probs=105.8
Q ss_pred hHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc----------------CCCeEEEEEeCCCCCH
Q 042290 26 DKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK----------------YFSFRAWAYVSEDFDA 89 (425)
Q Consensus 26 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----------------~f~~~~wv~~~~~~~~ 89 (425)
..+.|...+... .-+..+.++|+.|+||+++|..+++..--.. .++...|+.......-
T Consensus 12 ~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~ 86 (319)
T PRK08769 12 AYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTG 86 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccc
Confidence 345566666433 2345789999999999999998876432111 1111222210000000
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-h
Q 042290 90 VGITKVILQADAGSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-E 163 (425)
Q Consensus 90 ~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~ 163 (425)
. .....-..+++.+ +.+.+ .++.-++|||+++..+...-+.|+..+.....++.+|++|.+ .
T Consensus 87 ~-----------k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 87 D-----------KLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred c-----------cccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChh
Confidence 0 0000011222222 22222 245669999999888888888898888877777766666654 4
Q ss_pred hhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 164 GVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 164 ~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
.+...+.+....+.+.+++.+++...+.... .+ +..+..++..++|.|+....+.
T Consensus 155 ~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~~-------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 155 RLPATIRSRCQRLEFKLPPAHEALAWLLAQG---VS-------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hCchHHHhhheEeeCCCcCHHHHHHHHHHcC---CC-------hHHHHHHHHHcCCCHHHHHHHh
Confidence 5554444544789999999999998887541 11 1336678999999998665544
No 107
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=3.1e-05 Score=73.50 Aligned_cols=163 Identities=10% Similarity=0.064 Sum_probs=96.3
Q ss_pred cccc-chhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 19 EVYG-REKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 19 ~~vG-R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++| -+.-++.|.+.+... .-+....++|+.|+|||++|..+++...-........ ++.. .....+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~---cg~C----~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP---CGTC----TNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC---CCcC----HHHHHHh
Confidence 4567 666778888887543 2346779999999999999999876432111010000 0000 0000000
Q ss_pred HHhc-------CCCCCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhh
Q 042290 98 QADA-------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGV 165 (425)
Q Consensus 98 ~~l~-------~~~~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v 165 (425)
.... ........+++.+.+... ..+++-++|+|+++..+....+.|+..+.....++.+|++|.+ ..+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 000111223333322221 2345568999999888877888899988887777877777755 344
Q ss_pred hhccCCCCceeecCCCChhhHHHHHHHh
Q 042290 166 SSMVTTPGAAHSLGNLLRDGCLRIFVQH 193 (425)
Q Consensus 166 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 193 (425)
...+.+....+++.+++.++....+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 4444444478999999999998888654
No 108
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.23 E-value=5.7e-06 Score=79.97 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=76.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++++.+..++.+...|... +.+.++|++|+|||++|+.+++.......+..+.|+.+.+..+...++..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999998654 3588999999999999999998655455677888999988877665543221
Q ss_pred HHhcCCCCCCC-HHHHHHHHHHHc--CCceEEEEEeCCCCCChHH-HhccccccC
Q 042290 98 QADAGSVDVND-LNLLQLQLENQL--KNKKFLLVLDDMWSENYDV-RANLCKPFK 148 (425)
Q Consensus 98 ~~l~~~~~~~~-~~~~~~~l~~~l--~~k~~LLVlDdv~~~~~~~-~~~l~~~l~ 148 (425)
- ......- .....+.+.... .+++++||||++...+.+. +..+...+.
T Consensus 247 P---~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 P---NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred C---CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 0 0000000 011122222222 2468999999996555443 445444443
No 109
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.23 E-value=6.5e-06 Score=78.32 Aligned_cols=88 Identities=11% Similarity=0.076 Sum_probs=61.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhc-CCCCCCCHH------HHHHH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED--FDAVGITKVILQADA-GSVDVNDLN------LLQLQ 115 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~-~~~~~~~~~------~~~~~ 115 (425)
-..++|+|++|+|||||++.+++.... ++|+..+|+.+.+. .+..+++..++..+- ...+..... ...+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 356899999999999999999996543 37999999998866 688888888865544 222211111 11111
Q ss_pred HHHH-cCCceEEEEEeCCC
Q 042290 116 LENQ-LKNKKFLLVLDDMW 133 (425)
Q Consensus 116 l~~~-l~~k~~LLVlDdv~ 133 (425)
.... -.+++++|++|++.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 1121 35889999999994
No 110
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.23 E-value=1.1e-05 Score=85.80 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=84.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccC----CCeE-EEEEeCCCCCHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY----FSFR-AWAYVSEDFDAVGI 92 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~-~wv~~~~~~~~~~~ 92 (425)
..++||+.+++++.+.|.... ...+.++|++|+|||+||..++........ .... +++.++.-.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~----- 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV----- 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh-----
Confidence 458999999999999996543 245679999999999999999885321110 1222 233222110
Q ss_pred HHHHHHHhcCCCCCCCHHH-HHHHHHHHc-CCceEEEEEeCCCCCCh-------HHHhccccccCCCCCCcEEEEecCCh
Q 042290 93 TKVILQADAGSVDVNDLNL-LQLQLENQL-KNKKFLLVLDDMWSENY-------DVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 93 ~~~il~~l~~~~~~~~~~~-~~~~l~~~l-~~k~~LLVlDdv~~~~~-------~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
.......+.+. +...+.... .+++.+|++|+++.... .+-..++.+.... ...++|-+|...
T Consensus 247 --------ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~ 317 (857)
T PRK10865 247 --------AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLD 317 (857)
T ss_pred --------hccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCH
Confidence 00001111222 222222221 25689999999953210 1112232222222 234666555554
Q ss_pred hhhh------ccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 164 GVSS------MVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 164 ~v~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
+... .+......+.+...+.++...++....
T Consensus 318 e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 318 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 3321 111122456677778888888876543
No 111
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=6.6e-05 Score=70.49 Aligned_cols=175 Identities=9% Similarity=0.035 Sum_probs=104.4
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCC---CeEE-----EEEeCCCCCHHHHHHHHHH
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYF---SFRA-----WAYVSEDFDAVGITKVILQ 98 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f---~~~~-----wv~~~~~~~~~~~~~~il~ 98 (425)
.+.|.+.+... .-.....++|+.|+||+++|..+++..--.... .|.. ++..+..+|...+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 45566666443 234578899999999999999987643211100 0000 0000011110000
Q ss_pred HhcC-CCCCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhhhccCC
Q 042290 99 ADAG-SVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVSSMVTT 171 (425)
Q Consensus 99 ~l~~-~~~~~~~~~~~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~~~~~~ 171 (425)
.. ....-..++..+ +.+.+ .++.-++|+|+++..+....+.|+..+.....++.+|++|.+ ..+.....+
T Consensus 80 --~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 --EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred --ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 00 001122333332 22222 255668899999988888999999999887777877777765 445444444
Q ss_pred CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHH
Q 042290 172 PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAA 224 (425)
Q Consensus 172 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 224 (425)
....+.+.+++.+++.+.+....... ...+...+..++|.|+..
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~~---------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSAE---------ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhccC---------hHHHHHHHHHcCCCHHHH
Confidence 44789999999999999888764110 123566788999999643
No 112
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.19 E-value=6.6e-05 Score=74.65 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=102.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
...+.|+|++|+|||+|++.+++.......-..+++++.. .+...+...+.. ...+. +.+.+. +.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~----~~~~~----~~~~~~-~~ 212 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRN----NTMEE----FKEKYR-SV 212 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHc----CcHHH----HHHHHh-cC
Confidence 3568999999999999999999954322112335565432 233333333321 12222 223333 24
Q ss_pred EEEEEeCCCCCCh--HHHhccccccCC-CCCCcEEEEecCCh--hh-------hhccCCCCceeecCCCChhhHHHHHHH
Q 042290 125 FLLVLDDMWSENY--DVRANLCKPFKA-GLPGSKIIVTTRNE--GV-------SSMVTTPGAAHSLGNLLRDGCLRIFVQ 192 (425)
Q Consensus 125 ~LLVlDdv~~~~~--~~~~~l~~~l~~-~~~~~~ilvTtR~~--~v-------~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 192 (425)
-+|||||++.... .....+...+.. ...+..+|+||... .+ ...+... ..+++++.+.++-..++.+
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g-l~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG-LTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC-eeEEecCCCHHHHHHHHHH
Confidence 4899999954211 111222222211 11244578887653 11 1122222 5799999999999999998
Q ss_pred hhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhc-------cCCChHHHHHHHhhc
Q 042290 193 HSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLR-------DKYDPKDWEDVLNSK 247 (425)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~-------~~~~~~~w~~~l~~~ 247 (425)
.+.... ..-.++++..|++.+.|..-.+.-+-..|. ...+....+.++...
T Consensus 292 ~~~~~~----~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEEG----IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHcC----CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 875321 112247788899999998776554433332 114455555565543
No 113
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=2.4e-05 Score=77.17 Aligned_cols=181 Identities=16% Similarity=0.080 Sum_probs=101.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCC-CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYF-SFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
..+.|+|++|+|||.|++.+++... .... ..++|++. ..+...+...+.. ...+. +.+.+..+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~----~~~~~----f~~~~~~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKE----GKLNE----FREKYRKKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhc----ccHHH----HHHHHHhcC
Confidence 3589999999999999999998543 2222 24566653 3444555444431 12222 222333345
Q ss_pred EEEEEeCCCCCC-hHHH-hccccccCC-CCCCcEEEEecCC-hh----hhh----ccCCCCceeecCCCChhhHHHHHHH
Q 042290 125 FLLVLDDMWSEN-YDVR-ANLCKPFKA-GLPGSKIIVTTRN-EG----VSS----MVTTPGAAHSLGNLLRDGCLRIFVQ 192 (425)
Q Consensus 125 ~LLVlDdv~~~~-~~~~-~~l~~~l~~-~~~~~~ilvTtR~-~~----v~~----~~~~~~~~~~l~~L~~~ea~~Lf~~ 192 (425)
-+|+|||++... ...+ ..+...+.. ...+..+|+||.. .. +.. .+.. +..+.+++.+.+.-..++.+
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~-gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM-GLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc-CceEeeCCCCHHHHHHHHHH
Confidence 589999995321 1111 122222211 1134578888853 21 111 1222 25788999999999999988
Q ss_pred hhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhhc-------cCCChHHHHHHHhh
Q 042290 193 HSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLLR-------DKYDPKDWEDVLNS 246 (425)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L~-------~~~~~~~w~~~l~~ 246 (425)
.+..... . -.++++..|++.+.|..-.+.-+-..|. ...+....+++|..
T Consensus 275 ~~~~~~~-~---l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 275 MLEIEHG-E---LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKD 331 (440)
T ss_pred HHHhcCC-C---CCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8743211 1 1247788899999887666555543332 11445555555554
No 114
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.18 E-value=6.8e-05 Score=71.61 Aligned_cols=200 Identities=14% Similarity=0.096 Sum_probs=125.8
Q ss_pred chhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHH-HHHhcCcccccCCCeEEEEEeCCC---CCHHHHHHHHHH
Q 042290 23 REKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLA-QLVFNDVRVKKYFSFRAWAYVSED---FDAVGITKVILQ 98 (425)
Q Consensus 23 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~ 98 (425)
|.+.++.|..||.+... ..|.|.||-|+||+.|+ .++.++.+ .+..++|.+- .+...++..++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 66788999999977643 69999999999999999 77777422 2666665432 234555666666
Q ss_pred Hhc-CC-----------------------CC-CCCHH-HHHHHH-------HHH-------------------c---CCc
Q 042290 99 ADA-GS-----------------------VD-VNDLN-LLQLQL-------ENQ-------------------L---KNK 123 (425)
Q Consensus 99 ~l~-~~-----------------------~~-~~~~~-~~~~~l-------~~~-------------------l---~~k 123 (425)
++| .+ .+ ..+.+ ++...| ++. | ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 665 10 00 11222 222111 110 1 123
Q ss_pred eEEEEEeCCCCC---------ChHHHhccccccCCCCCCcEEEEecCChhhhh----ccCCC-CceeecCCCChhhHHHH
Q 042290 124 KFLLVLDDMWSE---------NYDVRANLCKPFKAGLPGSKIIVTTRNEGVSS----MVTTP-GAAHSLGNLLRDGCLRI 189 (425)
Q Consensus 124 ~~LLVlDdv~~~---------~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~----~~~~~-~~~~~l~~L~~~ea~~L 189 (425)
+-++||||+... ...+|...+.. .+-.+||++|-+..... .+... .+.+.|...+.+.|..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 578999998421 12344443221 23458998888754433 33222 37899999999999999
Q ss_pred HHHhhcCCCCc------------CC----CcchHHHHHHHHHhhCCChhHHHHhhhhhccCCChH
Q 042290 190 FVQHSLRRTDF------------VA----HQYLSEIGEKIVDRCNGSPLAAKTLGGLLRDKYDPK 238 (425)
Q Consensus 190 f~~~~~~~~~~------------~~----~~~~~~~~~~I~~~~~G~PLai~~~~~~L~~~~~~~ 238 (425)
...+....... .. ...........++..||--.-|..+++.++.+.++.
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 99887543110 00 012345567788999999999999999999886554
No 115
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.17 E-value=4.2e-06 Score=68.12 Aligned_cols=96 Identities=21% Similarity=0.090 Sum_probs=52.3
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCC-ceEE
Q 042290 48 IPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKN-KKFL 126 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~-k~~L 126 (425)
|.|+|++|+|||++|+.+++... ...+.++.+... ..........+...+.+.-.. ++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELI--------------SSYAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHH--------------TSSTTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccc--------------ccccccccccccccccccccccccee
Confidence 57999999999999999999542 123444433211 001112222233333333223 4899
Q ss_pred EEEeCCCCCChHH-----------HhccccccCCCC---CCcEEEEecCC
Q 042290 127 LVLDDMWSENYDV-----------RANLCKPFKAGL---PGSKIIVTTRN 162 (425)
Q Consensus 127 LVlDdv~~~~~~~-----------~~~l~~~l~~~~---~~~~ilvTtR~ 162 (425)
|+|||++...... ...+...+.... .+..+|.||..
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 9999995432222 333444443332 34567777765
No 116
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.15 E-value=2.3e-05 Score=67.99 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=64.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||-++-++.|.-...+ ++.+-+.|.||+|+||||-+..+++..--...-+.+.-.+.++...+.-+...|-
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK 100 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK 100 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH
Confidence 5689999999998777643 4667899999999999998888877533222223444444444433322222221
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHc-CCceEEEEEeCCCCCChHHHhccccc
Q 042290 98 QADAGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWSENYDVRANLCKP 146 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l-~~k~~LLVlDdv~~~~~~~~~~l~~~ 146 (425)
.-.... -.+ .++.-++|||.++++....-..++..
T Consensus 101 ~FAQ~k--------------v~lp~grhKIiILDEADSMT~gAQQAlRRt 136 (333)
T KOG0991|consen 101 MFAQKK--------------VTLPPGRHKIIILDEADSMTAGAQQALRRT 136 (333)
T ss_pred HHHHhh--------------ccCCCCceeEEEeeccchhhhHHHHHHHHH
Confidence 111000 001 25566899999977654444444443
No 117
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.11 E-value=5.1e-06 Score=81.82 Aligned_cols=189 Identities=13% Similarity=0.113 Sum_probs=116.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.++||-+.-.+.|.+.+.... -...-...|+-|+||||+|+.+++...-... ....++..-...+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhh
Confidence 457999999999999997653 3445678999999999999998874321110 0001111111111111
Q ss_pred HH-----hc-CCCCCCCHHHHHHHHHHHc----CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhh
Q 042290 98 QA-----DA-GSVDVNDLNLLQLQLENQL----KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVS 166 (425)
Q Consensus 98 ~~-----l~-~~~~~~~~~~~~~~l~~~l----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~ 166 (425)
.- +. ........++..+.+.+.. .++.=+.|||.|+-.....|+.|+..+.....+...|+.|.+ ..+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 00 0011223333333333322 345568999999888888999999999887777766665555 4454
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh
Q 042290 167 SMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL 222 (425)
Q Consensus 167 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 222 (425)
...-+....+.++.++.++-...+..-+....- ...++...-|++..+|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I----~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI----NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCC----ccCHHHHHHHHHHcCCChh
Confidence 444444478999999999888888776643221 2223566667777777443
No 118
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.11 E-value=8.6e-05 Score=73.16 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=86.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
...+.|+|++|+|||+|++.+++... .....+++++ ...+...+...+.. ... ..++..+. ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~----~~~----~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRS----GEM----QRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhc----chH----HHHHHHcc-cC
Confidence 35688999999999999999998543 2223345554 23333444444321 111 22333333 34
Q ss_pred EEEEEeCCCCCChH--HHhccccccCC-CCCCcEEEEecCCh--h---h----hhccCCCCceeecCCCChhhHHHHHHH
Q 042290 125 FLLVLDDMWSENYD--VRANLCKPFKA-GLPGSKIIVTTRNE--G---V----SSMVTTPGAAHSLGNLLRDGCLRIFVQ 192 (425)
Q Consensus 125 ~LLVlDdv~~~~~~--~~~~l~~~l~~-~~~~~~ilvTtR~~--~---v----~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 192 (425)
-+|+|||+...... ..+.+...+.. ...|..||+||... . + ...+.. +..+.+.+++.++...++.+
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~-Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEW-GIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcC-CeEEecCCCCHHHHHHHHHH
Confidence 48899998542211 11222222111 01345788888542 1 1 111222 26889999999999999988
Q ss_pred hhcCCCCcCCCcchHHHHHHHHHhhCCCh
Q 042290 193 HSLRRTDFVAHQYLSEIGEKIVDRCNGSP 221 (425)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 221 (425)
.+..... .-.+++..-|+..+.|.-
T Consensus 283 k~~~~~~----~l~~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALSI----RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcCC----CCCHHHHHHHHHhcCCCH
Confidence 7744221 112366666777776554
No 119
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.00013 Score=68.26 Aligned_cols=167 Identities=12% Similarity=0.072 Sum_probs=105.7
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc------------------CCCeEEEEEeCCCCC
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK------------------YFSFRAWAYVSEDFD 88 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~------------------~f~~~~wv~~~~~~~ 88 (425)
.+.|.+.+... .-...+.++|+.|+||+++|..+++..--.. ..+...|+.-..
T Consensus 12 ~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--- 83 (319)
T PRK06090 12 WQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--- 83 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc---
Confidence 45566666433 2456789999999999999999866321110 111122221100
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-
Q 042290 89 AVGITKVILQADAGSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN- 162 (425)
Q Consensus 89 ~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~- 162 (425)
....-..+++.+ +.+.+ .++.-++|||+++..+....+.++..+.....++.+|++|.+
T Consensus 84 --------------~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 84 --------------EGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred --------------CCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 001122333332 22222 244568999999888888999999999887777766666554
Q ss_pred hhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 163 EGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 163 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
..+...+.+....+.+.+++.+++.+.+..... +....++..++|.|+....+.
T Consensus 149 ~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~------------~~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 149 KRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI------------TVPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred hhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC------------chHHHHHHHcCCCHHHHHHHh
Confidence 455555555557899999999999998876421 013467889999999775553
No 120
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=9e-05 Score=74.67 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=92.7
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEE
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFL 126 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 126 (425)
.+.|+|..|+|||.|++.+++.......-..+++++. ..+...+...+.. ...+. +.+.+.+ .=+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~----~~~~~----f~~~y~~-~DL 380 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD----GKGDS----FRRRYRE-MDI 380 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh----ccHHH----HHHHhhc-CCE
Confidence 4899999999999999999995322111223556553 3344444433321 11222 2333332 248
Q ss_pred EEEeCCCCCCh-HHHh-ccccccCCC-CCCcEEEEecCCh--h-------hhhccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 127 LVLDDMWSENY-DVRA-NLCKPFKAG-LPGSKIIVTTRNE--G-------VSSMVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 127 LVlDdv~~~~~-~~~~-~l~~~l~~~-~~~~~ilvTtR~~--~-------v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
|||||+..... ..|. .+...+... ..+..|||||... . +...+... -.+.|.+.+.+.-..++.+++
T Consensus 381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G-Lvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG-LITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC-ceEEcCCCCHHHHHHHHHHHH
Confidence 99999954321 2222 222222211 2355688888763 1 11222222 688999999999999999887
Q ss_pred cCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhh
Q 042290 195 LRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGG 229 (425)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~ 229 (425)
....- . -.++++.-|++.+.++.-.|.-+..
T Consensus 460 ~~r~l-~---l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 460 VQEQL-N---APPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HhcCC-C---CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 54321 1 1247778888888777655555443
No 121
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=0.00012 Score=69.41 Aligned_cols=178 Identities=14% Similarity=0.083 Sum_probs=105.5
Q ss_pred hHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCC---CeE-----EEEEeCCCCCHHHHHHHHH
Q 042290 26 DKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYF---SFR-----AWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 26 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f---~~~-----~wv~~~~~~~~~~~~~~il 97 (425)
.-+.|.+.+.+. +-...+.++|+.|+||+++|..++...-=...- .|. -++..+..+|...+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 345666666443 245678899999999999999986643110000 000 00000001110000
Q ss_pred HHhcCCC--CCCCHHHHHHHHHHH----cCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhhhccC
Q 042290 98 QADAGSV--DVNDLNLLQLQLENQ----LKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVSSMVT 170 (425)
Q Consensus 98 ~~l~~~~--~~~~~~~~~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~~~~~ 170 (425)
.... ..-..++..+..... ..++.-++|||+++.++...-+.|+..+.....++.+|++|.+ ..+...+.
T Consensus 80 ---~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ---ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000 112233333322221 1355679999999888888899999999887777776666655 44554444
Q ss_pred CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHH
Q 042290 171 TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAK 225 (425)
Q Consensus 171 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~ 225 (425)
+....+.+.+++.+++...+..... . . .+.+..++..++|.|....
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~--~----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREVT--M----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHccC--C----C---HHHHHHHHHHcCCCHHHHH
Confidence 4446889999999999988865421 1 1 1346778999999996443
No 122
>CHL00176 ftsH cell division protein; Validated
Probab=98.07 E-value=4.3e-05 Score=78.31 Aligned_cols=186 Identities=17% Similarity=0.157 Sum_probs=100.9
Q ss_pred CccccchhhHHHHHHH---hhCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHH
Q 042290 18 KEVYGREKDKEAIVGL---LLGDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVG 91 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~---L~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 91 (425)
.+++|.++..+++.+. +..... -+...++-+.++|++|+|||+||+.++.... ..++.++.. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~-------~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE-------VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-------CCeeeccHH----H
Confidence 5688887766555444 333211 0122345689999999999999999988431 123332211 1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------Ch---HHHhccccccCC--CCCCcE
Q 042290 92 ITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------NY---DVRANLCKPFKA--GLPGSK 155 (425)
Q Consensus 92 ~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~~---~~~~~l~~~l~~--~~~~~~ 155 (425)
+.. .. .......+...+.......+++|+||+++.- +. ..+..++..+.. ...+..
T Consensus 252 f~~----~~----~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 252 FVE----MF----VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHH----Hh----hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 110 00 0111223344455556678899999999431 01 122233322221 224556
Q ss_pred EEEecCChh-hhhccC---CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCC-ChhHHHHh
Q 042290 156 IIVTTRNEG-VSSMVT---TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNG-SPLAAKTL 227 (425)
Q Consensus 156 ilvTtR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~~~ 227 (425)
||.||...+ +...+. .....+.+...+.++-.+++..++..... ........+++.+.| .+--|..+
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-----SPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCCCCHHHHHHH
Confidence 776665532 222111 12367889888999999999887643211 112345678888877 44444433
No 123
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.06 E-value=3.7e-05 Score=65.07 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=81.4
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc------------------CCCeEEEEEe
Q 042290 22 GREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK------------------YFSFRAWAYV 83 (425)
Q Consensus 22 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~------------------~f~~~~wv~~ 83 (425)
|-++..+.|.+.+.... -+..+.++|+.|+||+++|..+++..--.. .+....|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55667778888876542 345689999999999999999877432111 1223344432
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEE
Q 042290 84 SEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIV 158 (425)
Q Consensus 84 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv 158 (425)
.... ..-..++.. .+...+ .++.=++||||++....+..+.|+..+.....++.+|+
T Consensus 76 ~~~~-----------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 76 DKKK-----------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TTSS-----------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred cccc-----------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 2210 011223333 222222 24466899999998889999999999988888898888
Q ss_pred ecCCh-hhhhccCCCCceeecCCCC
Q 042290 159 TTRNE-GVSSMVTTPGAAHSLGNLL 182 (425)
Q Consensus 159 TtR~~-~v~~~~~~~~~~~~l~~L~ 182 (425)
+|.+. .+.....+....+.+.+++
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE----
T ss_pred EECChHHChHHHHhhceEEecCCCC
Confidence 88774 3444343433566666653
No 124
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.03 E-value=2.7e-05 Score=63.68 Aligned_cols=88 Identities=23% Similarity=0.101 Sum_probs=46.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCC-ce
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKN-KK 124 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~-k~ 124 (425)
..+.|+|++|+||||+++.++..... ....++++.............. ...................+...... +.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999985432 2233555554433222111111 11111111222222222333333333 34
Q ss_pred EEEEEeCCCCCC
Q 042290 125 FLLVLDDMWSEN 136 (425)
Q Consensus 125 ~LLVlDdv~~~~ 136 (425)
.+|++|++....
T Consensus 80 ~viiiDei~~~~ 91 (148)
T smart00382 80 DVLILDEITSLL 91 (148)
T ss_pred CEEEEECCcccC
Confidence 899999996543
No 125
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.02 E-value=5.5e-05 Score=79.67 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=72.9
Q ss_pred CCccccchhhHHHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGIT 93 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 93 (425)
...++|.+..++.|.+.+.....+ .+....++.++|++|+|||.||+.+++.. +...+.++.++.....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc---
Confidence 355889999999998888643210 12244578999999999999999998843 2234555544322211
Q ss_pred HHHHHHhcCCC---CCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCC
Q 042290 94 KVILQADAGSV---DVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKA 149 (425)
Q Consensus 94 ~~il~~l~~~~---~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~ 149 (425)
.+...++... .......+.+.++ .....+++||+++....+.++.|+..+..
T Consensus 525 -~~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 -TVSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -cHHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1122222211 1122222333333 23456999999988777888887777654
No 126
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=9.1e-05 Score=72.88 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=107.0
Q ss_pred CCccccchhhHHHHHHHhhCCCCC------CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLN------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
-.++=|-++.+.+|.+++.....+ +-..++=|.++|++|+|||.||++++.+.. +-++.++.+.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-------vPf~~isApe--- 258 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-------VPFLSISAPE--- 258 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-------CceEeecchh---
Confidence 456788999999888887543221 224556789999999999999999999543 3344444321
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------ChHHHhccccccCC---C---CCC
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------NYDVRANLCKPFKA---G---LPG 153 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~~~~~~~l~~~l~~---~---~~~ 153 (425)
+ -+....++.+.+.+.+.+....-+++++||+++-. ......+|+..+.. . +.+
T Consensus 259 -i--------vSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 259 -I--------VSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred -h--------hcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 1 12235566677777777888889999999999521 11122233333222 1 123
Q ss_pred cEEE-EecCChhhhhcc---CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 154 SKII-VTTRNEGVSSMV---TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 154 ~~il-vTtR~~~v~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
.-|| .|+|...+...+ +...+.+.|.--++..-.+++...+-+-.- ...-+ .++|++.+-|.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-SGDFD----FKQLAKLTPGF 395 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-CCCcC----HHHHHhcCCCc
Confidence 3333 355665443333 233467888877777777777766533221 11212 35566666553
No 127
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.01 E-value=5.2e-05 Score=75.29 Aligned_cols=168 Identities=14% Similarity=0.087 Sum_probs=89.4
Q ss_pred CccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCccccc---CCCeEEEEEeCCCC
Q 042290 18 KEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK---YFSFRAWAYVSEDF 87 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~ 87 (425)
.++.|.+.++++|.+.+..+-. .+-..++-+.++|++|+|||++|+.+++...... ......++++....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 5578899999998887643110 0122445689999999999999999999543211 11234444443211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-cCCceEEEEEeCCCCCC--------h----HHHhccccccCCC--CC
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWSEN--------Y----DVRANLCKPFKAG--LP 152 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~-l~~k~~LLVlDdv~~~~--------~----~~~~~l~~~l~~~--~~ 152 (425)
++... .+ . .......+....+.. ..+++++|+||+++... . .....++..+... ..
T Consensus 262 ----Ll~ky---vG-e-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 262 ----LLNKY---VG-E-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred ----hcccc---cc-h-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCC
Confidence 10000 00 0 000011111222221 23578999999995310 0 0122333333321 13
Q ss_pred CcEEEEecCCh-hhhhccC---CCCceeecCCCChhhHHHHHHHhh
Q 042290 153 GSKIIVTTRNE-GVSSMVT---TPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 153 ~~~ilvTtR~~-~v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
+..||.||... .+...+- .....++++..+.++..++|..+.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 44556565433 2222221 223568999999999999998876
No 128
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.00 E-value=3.4e-05 Score=75.43 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=88.0
Q ss_pred CccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
.++.|.+.++++|.+.+.-+-. -+-..++.+.|+|++|+|||+||+.+++.. ...| +.+... +
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el--~~~f-----i~V~~s-e-- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET--SATF-----LRVVGS-E-- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh--CCCE-----EEEecc-h--
Confidence 4578999999988887742110 011344568899999999999999999843 3333 222111 0
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------ChH---HHhccccccCC--CCCCc
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------NYD---VRANLCKPFKA--GLPGS 154 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~~~ 154 (425)
+... . .......+...+.....+.+.+|+||+++.. +.. ....++..+.. ...+.
T Consensus 253 -L~~k----~----~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 -LIQK----Y----LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred -hhhh----h----cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 1110 0 0111122233333333467889999997321 000 11122222221 12356
Q ss_pred EEEEecCChh-hhhccC---CCCceeecCCCChhhHHHHHHHhhc
Q 042290 155 KIIVTTRNEG-VSSMVT---TPGAAHSLGNLLRDGCLRIFVQHSL 195 (425)
Q Consensus 155 ~ilvTtR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 195 (425)
.||+||...+ +...+- .....+.+...+.++..++|..+..
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 7888776532 222221 1136789999999999999987753
No 129
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.99 E-value=4.1e-05 Score=77.99 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=41.2
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
-.+++|.++.+++|..++..... .....+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999865432 12234679999999999999999998743
No 130
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.96 E-value=0.00015 Score=70.45 Aligned_cols=182 Identities=15% Similarity=0.060 Sum_probs=97.3
Q ss_pred CCCCccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
+.-.++.|-+..+++|.+.+.-+-. .+-..++-+.++|++|+|||+||+.+++.. ...| +.+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f-----i~i~~-- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF-----IRVVG-- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh--
Confidence 3335688999888888776642110 012345678999999999999999999843 2222 22111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------ChH---HHhccccccCC--CC
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------NYD---VRANLCKPFKA--GL 151 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~~~---~~~~l~~~l~~--~~ 151 (425)
..+.... . ......+.+.+.......+.+|+||+++.. +.. .+..++..+.. ..
T Consensus 213 --s~l~~k~---~-----ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 --SEFVQKY---L-----GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred --HHHHHHh---c-----chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 1111110 0 111222333333444567899999998421 001 12223322221 12
Q ss_pred CCcEEEEecCCh-hhhhcc-C--CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 152 PGSKIIVTTRNE-GVSSMV-T--TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 152 ~~~~ilvTtR~~-~v~~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
.+..||+||... .+...+ . .....+.+...+.++...+|......... ...-+ ...+++.+.|.
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~dvd----~~~la~~t~g~ 350 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEEVD----LEDFVSRPEKI 350 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-CcccC----HHHHHHHcCCC
Confidence 456788777653 222221 1 22367889888888888888766532211 11112 34566666654
No 131
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.96 E-value=8e-05 Score=74.99 Aligned_cols=207 Identities=16% Similarity=0.113 Sum_probs=107.0
Q ss_pred CCccccchhhHHHHHHHhh---CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 17 EKEVYGREKDKEAIVGLLL---GDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
-.+++|-+...+++.+++. .... .+...++-+.++|++|+|||+||+.+++... .. ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeeccH----H
Confidence 3568898877665554443 2110 0123345689999999999999999988432 11 222221 1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC----------hH----HHhccccccCC--CCCCc
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN----------YD----VRANLCKPFKA--GLPGS 154 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~----------~~----~~~~l~~~l~~--~~~~~ 154 (425)
.+.. .. .......+...+.......+.+|+||+++... .. ....++..+.. ...+.
T Consensus 123 ~~~~----~~----~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 123 DFVE----MF----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHHH----HH----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 1111 10 01122333444444445678999999994310 01 11222222221 12345
Q ss_pred EEEEecCChh-hhhccC---CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCC-ChhHHHHhhh
Q 042290 155 KIIVTTRNEG-VSSMVT---TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNG-SPLAAKTLGG 229 (425)
Q Consensus 155 ~ilvTtR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~PLai~~~~~ 229 (425)
.||.||.... +...+. .....+.+...+.++-.++|..+...... ... .....+++.+.| .+--|..+..
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCCCHHHHHHHHH
Confidence 5666665432 222221 22367889988988888888877643211 111 224568888877 3444554433
Q ss_pred hh-----ccC---CChHHHHHHHhhc
Q 042290 230 LL-----RDK---YDPKDWEDVLNSK 247 (425)
Q Consensus 230 ~L-----~~~---~~~~~w~~~l~~~ 247 (425)
.. +.+ .+.+.+...++..
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 11 111 3455666555544
No 132
>PRK08116 hypothetical protein; Validated
Probab=97.95 E-value=1.9e-05 Score=72.63 Aligned_cols=104 Identities=25% Similarity=0.170 Sum_probs=58.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
..+.|+|.+|+|||.||..+++.... +...+++++ ...++..+....... ...+... +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~--~~~~v~~~~------~~~ll~~i~~~~~~~-~~~~~~~----~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE--KGVPVIFVN------FPQLLNRIKSTYKSS-GKEDENE----IIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE------HHHHHHHHHHHHhcc-ccccHHH----HHHHhcCCC-
Confidence 35889999999999999999996432 233456665 334444444433211 1112222 223333333
Q ss_pred EEEEeCCCCCChHHHhc--cccccCCC-CCCcEEEEecCCh
Q 042290 126 LLVLDDMWSENYDVRAN--LCKPFKAG-LPGSKIIVTTRNE 163 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~~--l~~~l~~~-~~~~~ilvTtR~~ 163 (425)
||||||+..+....|.. +...+... ..+..+|+||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995433334432 33322221 2455788888653
No 133
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.95 E-value=0.00012 Score=71.30 Aligned_cols=150 Identities=17% Similarity=0.054 Sum_probs=90.0
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEE
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFL 126 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 126 (425)
++.|.|+-++|||||++.+..... +. .++++..+......-+.+.+ ..+...-..++..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~--~~---~iy~~~~d~~~~~~~l~d~~----------------~~~~~~~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL--EE---IIYINFDDLRLDRIELLDLL----------------RAYIELKEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC--cc---eEEEEecchhcchhhHHHHH----------------HHHHHhhccCCce
Confidence 999999999999999977776422 22 55655433221111111111 1111111227789
Q ss_pred EEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhh-----hhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcC
Q 042290 127 LVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGV-----SSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFV 201 (425)
Q Consensus 127 LVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 201 (425)
|+||.| .....|......+....+. ++++|+-+... +..+.+....+.+.||+..|-..+-.... .
T Consensus 98 ifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~------~ 168 (398)
T COG1373 98 IFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI------E 168 (398)
T ss_pred EEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc------c
Confidence 999999 5556888888888776665 88888887533 33344445789999999999876543000 0
Q ss_pred CCcchHHHHHHHHHhhCCChhHHHHhh
Q 042290 202 AHQYLSEIGEKIVDRCNGSPLAAKTLG 228 (425)
Q Consensus 202 ~~~~~~~~~~~I~~~~~G~PLai~~~~ 228 (425)
.. .... .-.-.-.+||.|-++..-.
T Consensus 169 ~~-~~~~-~f~~Yl~~GGfP~~v~~~~ 193 (398)
T COG1373 169 PS-KLEL-LFEKYLETGGFPESVKADL 193 (398)
T ss_pred hh-HHHH-HHHHHHHhCCCcHHHhCcc
Confidence 00 1111 2223345789998876543
No 134
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.92 E-value=4.2e-05 Score=74.70 Aligned_cols=154 Identities=15% Similarity=0.204 Sum_probs=86.1
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
...++||++.++.+...+.... .|.|.|++|+|||+||+.+.........|.... +... +..+++..+
T Consensus 19 ~~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~-~~ft---tp~DLfG~l 86 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLM-TRFS---TPEEVFGPL 86 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcceeee-eeec---CcHHhcCcH
Confidence 4569999999999999887654 489999999999999999988432222333111 1101 112222111
Q ss_pred -HHHhcCCCCCCCHHHHHHHHHHHcCC---ceEEEEEeCCCCCChHHHhccccccCCCC---------CCcEEEEecCCh
Q 042290 97 -LQADAGSVDVNDLNLLQLQLENQLKN---KKFLLVLDDMWSENYDVRANLCKPFKAGL---------PGSKIIVTTRNE 163 (425)
Q Consensus 97 -l~~l~~~~~~~~~~~~~~~l~~~l~~---k~~LLVlDdv~~~~~~~~~~l~~~l~~~~---------~~~~ilvTtR~~ 163 (425)
+.... ... .+.....+ ..-+|++|+++.........|+..+.... -..++++++.+.
T Consensus 87 ~i~~~~---~~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 87 SIQALK---DEG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred HHhhhh---hcC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 11100 000 01111111 12289999998877777777666652211 123565555553
Q ss_pred hhhh-------ccCCCCceeecCCCChhhH-HHHHHHh
Q 042290 164 GVSS-------MVTTPGAAHSLGNLLRDGC-LRIFVQH 193 (425)
Q Consensus 164 ~v~~-------~~~~~~~~~~l~~L~~~ea-~~Lf~~~ 193 (425)
+.. .+......+.+++++.++. .+++...
T Consensus 157 -LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 -LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 1221124688999985444 7777654
No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.91 E-value=0.00029 Score=64.69 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=28.8
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHH
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGIT 93 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 93 (425)
.|.|.|++|+|||+||+.+++. ... ..+.+++....+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHh
Confidence 5779999999999999999872 221 23455665555554443
No 136
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00041 Score=65.72 Aligned_cols=94 Identities=15% Similarity=0.226 Sum_probs=68.1
Q ss_pred CceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEec-CChhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCc
Q 042290 122 NKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTT-RNEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDF 200 (425)
Q Consensus 122 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 200 (425)
++.-++|||+++..+....+.|+..+....+++.+|++| +...+...+.+....+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---VA- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---CC-
Confidence 445689999999999999999999998877777655555 5455555544444789999999999999887752 10
Q ss_pred CCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 201 VAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 201 ~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
+ ...++..++|.|+....+
T Consensus 207 -------~-~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 -------D-ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -------h-HHHHHHHcCCCHHHHHHH
Confidence 1 223577889999755444
No 137
>PRK10536 hypothetical protein; Provisional
Probab=97.84 E-value=0.00013 Score=65.59 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=76.0
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEE--e--CCC-----C
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAY--V--SED-----F 87 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~--~--~~~-----~ 87 (425)
-..+.+|......+..++.+. .++.+.|++|+|||+||..++.+.-..+.|..++... + .+. -
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCC
Confidence 355678999999999988542 3899999999999999999877432234454333321 1 110 0
Q ss_pred CHHHH----HHHHHHHhcCCCCCCCHHHHHHHH-----------HHHcCCce---EEEEEeCCCCCChHHHhccccccCC
Q 042290 88 DAVGI----TKVILQADAGSVDVNDLNLLQLQL-----------ENQLKNKK---FLLVLDDMWSENYDVRANLCKPFKA 149 (425)
Q Consensus 88 ~~~~~----~~~il~~l~~~~~~~~~~~~~~~l-----------~~~l~~k~---~LLVlDdv~~~~~~~~~~l~~~l~~ 149 (425)
+..+- +.-+...+..-... +.....+ -.+++++. -++|+|.+.+.+......++..
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~~~---~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR--- 199 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRLGA---SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR--- 199 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCh---HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---
Confidence 11111 11111111100011 1111111 12455654 4999999987776666665544
Q ss_pred CCCCcEEEEecCCh
Q 042290 150 GLPGSKIIVTTRNE 163 (425)
Q Consensus 150 ~~~~~~ilvTtR~~ 163 (425)
.+.+|++|+|--..
T Consensus 200 ~g~~sk~v~~GD~~ 213 (262)
T PRK10536 200 LGENVTVIVNGDIT 213 (262)
T ss_pred cCCCCEEEEeCChh
Confidence 35789999988654
No 138
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.84 E-value=9.2e-05 Score=79.25 Aligned_cols=136 Identities=17% Similarity=0.162 Sum_probs=80.2
Q ss_pred CccccchhhHHHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..++|.+..++.+.+.+.....+ .+....++.+.|++|+|||++|+.++.... ..-...+.++++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhhcccch---
Confidence 45899999999999988754221 112346788999999999999999987422 1122334444443222111
Q ss_pred HHHHHhcCCCC---CCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEec
Q 042290 95 VILQADAGSVD---VNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTT 160 (425)
Q Consensus 95 ~il~~l~~~~~---~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTt 160 (425)
....++.+.. ......+...++. ....+|+||++...+...+..|+..+..+. ..+-||+||
T Consensus 640 -~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 640 -VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred -HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 1112222211 1112223333332 334599999998888888888888775431 233477777
Q ss_pred CC
Q 042290 161 RN 162 (425)
Q Consensus 161 R~ 162 (425)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 64
No 139
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00035 Score=67.06 Aligned_cols=152 Identities=17% Similarity=0.124 Sum_probs=86.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCC--eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFS--FRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLK 121 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~ 121 (425)
....+.|+|..|.|||.|++++++.. ..... .+++++ .......++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~--~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA--LANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH--HhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh-
Confidence 45689999999999999999999953 33333 334332 23333444433321 1223344444
Q ss_pred CceEEEEEeCCCCC--C---hHHHhccccccCCCCCCcEEEEecCCh---------hhhhccCCCCceeecCCCChhhHH
Q 042290 122 NKKFLLVLDDMWSE--N---YDVRANLCKPFKAGLPGSKIIVTTRNE---------GVSSMVTTPGAAHSLGNLLRDGCL 187 (425)
Q Consensus 122 ~k~~LLVlDdv~~~--~---~~~~~~l~~~l~~~~~~~~ilvTtR~~---------~v~~~~~~~~~~~~l~~L~~~ea~ 187 (425)
.-=++++||++.- . .+..-.+...+.. .|-.||+|++.. .+...+... -.+.+.+.+.+...
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~G-l~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWG-LVVEIEPPDDETRL 250 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhce-eEEeeCCCCHHHHH
Confidence 2348999999531 1 1222223333333 334899999653 122223333 68999999999999
Q ss_pred HHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 188 RIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 188 ~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
..+.+.+....-..+. ++..-|++....+
T Consensus 251 aiL~kka~~~~~~i~~----ev~~~la~~~~~n 279 (408)
T COG0593 251 AILRKKAEDRGIEIPD----EVLEFLAKRLDRN 279 (408)
T ss_pred HHHHHHHHhcCCCCCH----HHHHHHHHHhhcc
Confidence 9999876443322222 4444455544443
No 140
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.00022 Score=67.77 Aligned_cols=149 Identities=14% Similarity=0.071 Sum_probs=89.5
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc-------------------CCCeEE
Q 042290 19 EVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK-------------------YFSFRA 79 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-------------------~f~~~~ 79 (425)
.++|-+.....+..+..... .....+.++|++|+||||+|..+++..--.. .++...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 46778888888888886443 1334699999999999999999988542111 112233
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEE
Q 042290 80 WAYVSEDFD---AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKI 156 (425)
Q Consensus 80 wv~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~i 156 (425)
.++-+.... ..+..+.+........ ..++.-+++||+++....+.-+.++..+......+.+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 333332222 1222222222221000 0255679999999877777777788877777777888
Q ss_pred EEecCC-hhhhhccCCCCceeecCCCChhhH
Q 042290 157 IVTTRN-EGVSSMVTTPGAAHSLGNLLRDGC 186 (425)
Q Consensus 157 lvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea 186 (425)
|++|.. ..+...+.+....+.+.+.+..+.
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCchHHHH
Confidence 877763 344443444445677776443333
No 141
>PRK08181 transposase; Validated
Probab=97.80 E-value=3.8e-05 Score=70.32 Aligned_cols=101 Identities=20% Similarity=0.131 Sum_probs=54.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
..+.|+|++|+|||.||..+++... .....+.|+. ..+++..+.... ...+.......+ . +.-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~------~~~L~~~l~~a~----~~~~~~~~l~~l----~-~~d 169 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTR------TTDLVQKLQVAR----RELQLESAIAKL----D-KFD 169 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeee------HHHHHHHHHHHH----hCCcHHHHHHHH----h-cCC
Confidence 3589999999999999999988432 2223355554 234444443221 112222222222 2 234
Q ss_pred EEEEeCCCCCChHHH--hccccccCCCCCCcEEEEecCCh
Q 042290 126 LLVLDDMWSENYDVR--ANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 126 LLVlDdv~~~~~~~~--~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
||||||+.......+ ..+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 999999953322222 22333332221224688888764
No 142
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.79 E-value=6.1e-05 Score=80.13 Aligned_cols=136 Identities=17% Similarity=0.183 Sum_probs=78.7
Q ss_pred CccccchhhHHHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..++|.+..++.+.+.+.....+ .++...++.++|++|+|||.||+.+++... +.....+-++++...+ -.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~--~~~~~~~~~dmse~~~----~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY--GGEQNLITINMSEFQE----AH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh--CCCcceEEEeHHHhhh----hh
Confidence 46899999999998888543210 123456899999999999999998877421 1112222333222111 11
Q ss_pred HHHHHhcCCCC---CCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEec
Q 042290 95 VILQADAGSVD---VNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTT 160 (425)
Q Consensus 95 ~il~~l~~~~~---~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTt 160 (425)
.+...++.... ......+...+++ ....+|+||++...+...++.+...+..+. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 11122232111 1112223333433 456799999998777777877777665542 345566666
Q ss_pred CC
Q 042290 161 RN 162 (425)
Q Consensus 161 R~ 162 (425)
..
T Consensus 717 Nl 718 (852)
T TIGR03345 717 NA 718 (852)
T ss_pred CC
Confidence 54
No 143
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.79 E-value=5.9e-05 Score=79.35 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=90.4
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
+.+.+|.++..++|.++|......+.....++.++|++|+||||+|+.++.. ....| +-++.+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 4558999999999998886322111234468999999999999999999873 22222 223334333332221111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHH----HhccccccCC---------------CCCCcEEE
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDV----RANLCKPFKA---------------GLPGSKII 157 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~----~~~l~~~l~~---------------~~~~~~il 157 (425)
.... ......+...+...- ...-+++||.++...... ...+...+.. .-....+|
T Consensus 396 ~~~~-----g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 396 RTYI-----GSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred hccC-----CCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 0111 111122333333322 234478899995322111 2333333321 11344555
Q ss_pred EecCChhhhhccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 158 VTTRNEGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 158 vTtR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
.|+....+...+-.....+.+.+++.++-.++..++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5664433322222222678999999999888877765
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=5.4e-05 Score=77.82 Aligned_cols=126 Identities=19% Similarity=0.191 Sum_probs=80.4
Q ss_pred CccccchhhHHHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..++|.+..++.+.+.+.....+ .+.+.++....|+.|||||-||+.++... -+.=+..+-++.|+.. --.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L--fg~e~aliR~DMSEy~----EkH 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL--FGDEQALIRIDMSEYM----EKH 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh--cCCCccceeechHHHH----HHH
Confidence 45899999999999988665432 23556788889999999999999998732 1111334444444322 123
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHcCCceE-EEEEeCCCCCChHHHhccccccCCC
Q 042290 95 VILQADAGSVDVNDLNLLQLQLENQLKNKKF-LLVLDDMWSENYDVRANLCKPFKAG 150 (425)
Q Consensus 95 ~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~-LLVlDdv~~~~~~~~~~l~~~l~~~ 150 (425)
.+.+.++.++.--..++ --.|.+..+.++| ++.||++...+.+..+-+++.|..+
T Consensus 565 sVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 SVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 33344443332211111 2234455556666 8889999888888888888887764
No 145
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.76 E-value=0.00017 Score=76.40 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=85.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|.++..++|.+++......+..+.+++.++|++|+|||++|+.+++.. ...| .-++++...+...+...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l--~~~~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL--NRKF---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh--cCCe---EEEeCCCcccHHHHcCC--
Confidence 4578999988888886643211112234589999999999999999999843 2223 12223322222221110
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh----HHHhccccccCC--------C-------CCCcEEEE
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY----DVRANLCKPFKA--------G-------LPGSKIIV 158 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~----~~~~~l~~~l~~--------~-------~~~~~ilv 158 (425)
...........+...+...... +-+++||.++.... +....++..+.. . ..+..+|.
T Consensus 393 ---~~~~~g~~~g~i~~~l~~~~~~-~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 393 ---RRTYVGAMPGRIIQGLKKAKTK-NPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred ---CCceeCCCCchHHHHHHHhCcC-CCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 0111111122333444443333 34789999854321 111222222211 0 02334445
Q ss_pred ecCCh-hhhhccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 159 TTRNE-GVSSMVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 159 TtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
||... .+...+-.....+++.+++.++-.+++..+.
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55432 1222222222688999999988888876653
No 146
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.76 E-value=0.00083 Score=67.44 Aligned_cols=204 Identities=15% Similarity=0.079 Sum_probs=115.4
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcc---cc---cCCCeEEEEEeCCCCCHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR---VK---KYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~---~~---~~f~~~~wv~~~~~~~~~ 90 (425)
+..+-+|+.|..+|.+.+...=.. +...+++-|.|.+|+|||..+..|.+... .+ ..|+ .+.++...-....
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 456789999999999888654221 13345999999999999999999988432 11 2243 3445555556688
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcC-----CceEEEEEeCCCCCChHHHhccccccCC-CCCCcEEEEecCCh-
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLK-----NKKFLLVLDDMWSENYDVRANLCKPFKA-GLPGSKIIVTTRNE- 163 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~-----~k~~LLVlDdv~~~~~~~~~~l~~~l~~-~~~~~~ilvTtR~~- 163 (425)
+++..|...+.... .......+.|..+.. .+.+++++|+++..-...-+-+...+.+ ..+++|++|.+=..
T Consensus 473 ~~Y~~I~~~lsg~~--~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 473 EIYEKIWEALSGER--VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHHhcccCc--ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 99999999887332 222333344444433 3578999999832111112223334443 34667766554321
Q ss_pred -h---------hhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 164 -G---------VSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 164 -~---------v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
+ +...++ ...+...|-+.++-.+....+..+.. .....-.+-++++|+.-.|-.-.|+...
T Consensus 551 mdlPEr~l~nrvsSRlg--~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLG--LTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ccCHHHHhccchhhhcc--ceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 1 111111 14566777777777777766653331 1122223334445555444444444444
No 147
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.73 E-value=0.00014 Score=77.55 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=78.1
Q ss_pred CccccchhhHHHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..++|.+..++.|.+.+.....+ .+.....+.++|++|+|||+||+.+++..- +.-...+-++.+.-.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~--~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF--GSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCccceEEEEchhcccccc---
Confidence 56899999999998888533210 123345678999999999999999987321 1112233344433222111
Q ss_pred HHHHHhcCCC---CCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEec
Q 042290 95 VILQADAGSV---DVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTT 160 (425)
Q Consensus 95 ~il~~l~~~~---~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTt 160 (425)
+...++.+. .......+.+.++. ....+++||+++..+.+.++.|+..+..+. ..+-+|+||
T Consensus 584 -~~~l~g~~~gyvg~~~~~~l~~~~~~---~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 584 -VSKLIGSPPGYVGYNEGGQLTEAVRK---KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred -HHHhcCCCCcccCcCccchHHHHHHh---CCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 111122111 11122223333322 233689999998888888888887766531 345566666
Q ss_pred CC
Q 042290 161 RN 162 (425)
Q Consensus 161 R~ 162 (425)
..
T Consensus 660 n~ 661 (821)
T CHL00095 660 NL 661 (821)
T ss_pred Cc
Confidence 64
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.73 E-value=0.00013 Score=77.86 Aligned_cols=123 Identities=16% Similarity=0.143 Sum_probs=70.4
Q ss_pred CccccchhhHHHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..++|.+..++.|...+.....+ .+....++.++|++|+|||+||+.+++... ..-...+.++++.... ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhh-hh---
Confidence 45889999999988888643210 112335789999999999999999987431 1112234444433211 11
Q ss_pred HHHHHhcCCCCC---CCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCC
Q 042290 95 VILQADAGSVDV---NDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKA 149 (425)
Q Consensus 95 ~il~~l~~~~~~---~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~ 149 (425)
.....++.+... .....+...++ ....-+|+||++...+...+..+...+..
T Consensus 642 ~~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred hHHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 111223322111 11122222222 12336999999987777888887776654
No 149
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.72 E-value=0.00033 Score=69.66 Aligned_cols=181 Identities=13% Similarity=0.016 Sum_probs=91.8
Q ss_pred CccccchhhHHHHHHHhhC---C-CCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLG---D-DLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGIT 93 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~---~-~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 93 (425)
.++.|.+...+.+.+.... . ...+-..++-|.++|++|+|||.+|+.+++... -.| +-++.+. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~------l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK------L- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH------h-
Confidence 4577877665555442211 0 000123456789999999999999999998532 111 1122111 1
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC--------ChH----HHhccccccCCCCCCcEEEEecC
Q 042290 94 KVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE--------NYD----VRANLCKPFKAGLPGSKIIVTTR 161 (425)
Q Consensus 94 ~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~--------~~~----~~~~l~~~l~~~~~~~~ilvTtR 161 (425)
.......+...+...+...-...+++|+||+++.. +.. ....+...+.....+.-||.||.
T Consensus 296 -------~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 296 -------FGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred -------cccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 00111122223333333333457899999999421 000 11112222333334455666775
Q ss_pred Ch-hhhhcc---CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 162 NE-GVSSMV---TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 162 ~~-~v~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
.. .+...+ +.....+.++.-+.++-.++|..+.......... ......+++.+.|.
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~---~~dl~~La~~T~Gf 428 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK---KYDIKKLSKLSNKF 428 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc---ccCHHHHHhhcCCC
Confidence 53 222222 1223678888888888889998776442211000 11245566666654
No 150
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.72 E-value=0.00023 Score=71.99 Aligned_cols=169 Identities=19% Similarity=0.224 Sum_probs=89.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccc--ccCCC-eEEEEEeCC---CCCHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV--KKYFS-FRAWAYVSE---DFDAVG 91 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~--~~~f~-~~~wv~~~~---~~~~~~ 91 (425)
.+++|.+..++.+...+... ....+.|+|++|+|||++|+.+++.... ...|. ..-|+.+.- .++...
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 45899999999998877443 3346789999999999999998753211 11232 122333221 111111
Q ss_pred HHHHHHHHhcCC-------CCCCC-HHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC-------------
Q 042290 92 ITKVILQADAGS-------VDVND-LNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG------------- 150 (425)
Q Consensus 92 ~~~~il~~l~~~-------~~~~~-~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~------------- 150 (425)
+...++...... ..... .......+. ....-+|+||++...+......|+..+...
T Consensus 139 ~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 139 IADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred cchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 111111100000 00000 000000011 123458999999877777766665443211
Q ss_pred ---------------CCCcEEEEec-CCh-hhhhccCCCCceeecCCCChhhHHHHHHHhhc
Q 042290 151 ---------------LPGSKIIVTT-RNE-GVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSL 195 (425)
Q Consensus 151 ---------------~~~~~ilvTt-R~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 195 (425)
....++|.+| ++. .+...+......+.+.+++.+|-.+++.+.+-
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 1234666544 432 22222222235788999999999998888764
No 151
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.71 E-value=4.2e-05 Score=65.77 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=51.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
..-+.|+|++|+|||.||..+++.... ..+ .+.|+.. .+++..+ .........+.....+. . .
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~-~v~f~~~------~~L~~~l----~~~~~~~~~~~~~~~l~---~--~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KGY-SVLFITA------SDLLDEL----KQSRSDGSYEELLKRLK---R--V 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEH------HHHHHHH----HCCHCCTTHCHHHHHHH---T--S
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc-ceeEeec------Cceeccc----cccccccchhhhcCccc---c--c
Confidence 356999999999999999999885432 223 3566653 3333333 32222223333333222 2 2
Q ss_pred EEEEEeCCCCCChHHHhc--cccccCCCCCCcEEEEecCCh
Q 042290 125 FLLVLDDMWSENYDVRAN--LCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 125 ~LLVlDdv~~~~~~~~~~--l~~~l~~~~~~~~ilvTtR~~ 163 (425)
=||||||+-......|.. +...+........+||||...
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred cEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 488999995444334432 222222211123577888754
No 152
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.00046 Score=65.19 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=50.9
Q ss_pred CceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh-hhhhccCCCCceeecCCCChhhHHHHHHHh
Q 042290 122 NKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE-GVSSMVTTPGAAHSLGNLLRDGCLRIFVQH 193 (425)
Q Consensus 122 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 193 (425)
+++-++|+|++...+...-+.++..+.....++.+|++|.+. .+...+.+....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344466779998877777777777776655566677777664 444444444478999999999999888664
No 153
>PRK04132 replication factor C small subunit; Provisional
Probab=97.69 E-value=0.00093 Score=70.25 Aligned_cols=159 Identities=12% Similarity=0.009 Sum_probs=100.9
Q ss_pred EEe--cCCchHHHHHHHHhcCcccccCC-CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEE
Q 042290 50 ITG--MGGLGKTTLAQLVFNDVRVKKYF-SFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFL 126 (425)
Q Consensus 50 I~G--~~GvGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~L 126 (425)
+.| |.++||||+|..++++.-. +.+ ...+-++.++...... .++++..+...... -..+.-+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~-------------~~~~~KV 633 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINV-IREKVKEFARTKPI-------------GGASFKI 633 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc-------------CCCCCEE
Confidence 447 8899999999999985321 222 2355666665444443 33443332211000 0124579
Q ss_pred EEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcc
Q 042290 127 LVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQY 205 (425)
Q Consensus 127 LVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~ 205 (425)
+|||+++..+.+..+.|+..+......+++|+++.+ ..+...+.+....+.+.+++.++....+...+....- .-
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi----~i 709 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL----EL 709 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC----CC
Confidence 999999988888888888888765566777666554 3443334444478999999999998887765532211 11
Q ss_pred hHHHHHHHHHhhCCChhHHHHh
Q 042290 206 LSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 206 ~~~~~~~I~~~~~G~PLai~~~ 227 (425)
.++....|++.++|.+...-.+
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHHHH
Confidence 2367888999999988544333
No 154
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.69 E-value=7.5e-05 Score=63.49 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=67.6
Q ss_pred cccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042290 20 VYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQA 99 (425)
Q Consensus 20 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 99 (425)
+||....+.++.+.+..-.. ....|.|+|..|+||+.+|+.+.+.. ...-..-+-|+++. .+...+-..+...
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhh-hhcchhhhhhhcc
Confidence 47888888888877765432 22467899999999999999998832 22222233444443 2333332222221
Q ss_pred hcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC------C-----CCcEEEEecCCh
Q 042290 100 DAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG------L-----PGSKIIVTTRNE 163 (425)
Q Consensus 100 l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~------~-----~~~~ilvTtR~~ 163 (425)
.......... ...-.+...-. =.|+||++.......-..|...+..+ . ..+|||.||..+
T Consensus 74 ~~~~~~~~~~-~~~G~l~~A~~---GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARS-DKKGLLEQANG---GTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSS-EBEHHHHHTTT---SEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccc-ccCCceeeccc---eEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 1111000000 00122333222 36899999776655555555544321 1 256899888864
No 155
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.68 E-value=0.00043 Score=65.67 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=61.1
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCe-EEEEEeCCC-CCHHHHHHHHHHHhcCCC
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSF-RAWAYVSED-FDAVGITKVILQADAGSV 104 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~il~~l~~~~ 104 (425)
..++++.+..-. +-.-+.|+|++|+|||||++.+++.... .+-+. .+|+.+.+. .+..+++..+...+....
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 445777775432 2235689999999999999998884322 22233 466666554 457788888887776322
Q ss_pred -CCCCHHHH-----HHHHHHHc--CCceEEEEEeCC
Q 042290 105 -DVNDLNLL-----QLQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 105 -~~~~~~~~-----~~~l~~~l--~~k~~LLVlDdv 132 (425)
+....... ...+.+++ .+++++||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11111111 11111222 588999999999
No 156
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.00056 Score=60.60 Aligned_cols=180 Identities=15% Similarity=0.138 Sum_probs=99.0
Q ss_pred CCccccchhhHH---HHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHH
Q 042290 17 EKEVYGREKDKE---AIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGIT 93 (425)
Q Consensus 17 ~~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 93 (425)
-.++||.++... -|.+.|..+..-+...++-|..+|++|.|||-+|+++++..++ -++.+.. .++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv-------p~l~vka----t~l- 187 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLLLVKA----TEL- 187 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC-------ceEEech----HHH-
Confidence 356899887654 4677776665445567889999999999999999999995432 2222221 111
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC------------CChHHHhccccccCC--CCCCcEEEEe
Q 042290 94 KVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWS------------ENYDVRANLCKPFKA--GLPGSKIIVT 159 (425)
Q Consensus 94 ~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~------------~~~~~~~~l~~~l~~--~~~~~~ilvT 159 (425)
|-+.++ +...++.+...+.-+.-+|+++||.++. +-.+..+.|+..+.. ...|...|..
T Consensus 188 --iGehVG-----dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 188 --IGEHVG-----DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred --HHHHhh-----hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 111111 1222333333444456689999998842 112233344444432 2345545544
Q ss_pred cCChhhh-hccCCC-CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 160 TRNEGVS-SMVTTP-GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 160 tR~~~v~-~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
|...++. ....+. ...++..--+.+|-.+++...+-.-.-+. ....+.++++++|.
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-----~~~~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-----DADLRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-----ccCHHHHHHHhCCC
Confidence 4443222 222221 25566666677888888877663221111 12245566666664
No 157
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.65 E-value=0.00018 Score=64.81 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=55.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
...+.++|.+|+|||+||..+++.... .-..+++++ ..++...+-.... ....+.+. +.+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it------~~~l~~~l~~~~~--~~~~~~~~----~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIIT------VADIMSAMKDTFS--NSETSEEQ----LLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEE------HHHHHHHHHHHHh--hccccHHH----HHHHhc-cC
Confidence 347899999999999999999985432 223455553 3344444333321 11112222 223343 23
Q ss_pred EEEEEeCCCCCChHHHhc--cccccCCC-CCCcEEEEecCC
Q 042290 125 FLLVLDDMWSENYDVRAN--LCKPFKAG-LPGSKIIVTTRN 162 (425)
Q Consensus 125 ~LLVlDdv~~~~~~~~~~--l~~~l~~~-~~~~~ilvTtR~ 162 (425)
=||||||+.......|.. +...+... .....+||||..
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 489999996554445553 22222211 123456667654
No 158
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.64 E-value=0.00021 Score=62.55 Aligned_cols=117 Identities=22% Similarity=0.280 Sum_probs=72.4
Q ss_pred CCCcccCCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 7 RPLSTTSSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 7 ~~~~~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
.|.|.+.+++-..++|-+...+.|.+....--. +...--|.+||.-|+|||+|++++.+.. ....-. -|.+...
T Consensus 49 ~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e~--~~~glr--LVEV~k~ 122 (287)
T COG2607 49 EPVPDPDPIDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNEY--ADEGLR--LVEVDKE 122 (287)
T ss_pred cCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHHH--HhcCCe--EEEEcHH
Confidence 445555556667899999988888765433221 2234468999999999999999998843 333322 3333321
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCC-CCChHHHhccccccCC
Q 042290 87 FDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMW-SENYDVRANLCKPFKA 149 (425)
Q Consensus 87 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~-~~~~~~~~~l~~~l~~ 149 (425)
+..+...+.+.|+. ...+++|+.||+. +.....+..+...|..
T Consensus 123 ------------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 ------------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred ------------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 11122233333333 4679999999994 3444567777766654
No 159
>PRK04296 thymidine kinase; Provisional
Probab=97.63 E-value=9.1e-05 Score=64.53 Aligned_cols=112 Identities=13% Similarity=-0.077 Sum_probs=63.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHcCC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSV---DVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~---~~~~~~~~~~~l~~~l~~ 122 (425)
.++.|+|+.|.||||++..++.... .+-..++.+. ..++.......++..++... ......++...+.. ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999999888432 2223333332 11122222333444444111 12334445555544 334
Q ss_pred ceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChh
Q 042290 123 KKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEG 164 (425)
Q Consensus 123 k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~ 164 (425)
+.-+||+|.+...+.++..++...+. ..|..+++|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 55689999995443333444444333 35788999998853
No 160
>PRK12377 putative replication protein; Provisional
Probab=97.62 E-value=0.00026 Score=64.04 Aligned_cols=101 Identities=18% Similarity=0.066 Sum_probs=54.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
..+.|+|++|+|||.||..+++... .....++++++. +++..+-..... ..... +.+ +.+ .+.-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~---~~~~~---~~l-~~l-~~~d 165 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDN---GQSGE---KFL-QEL-CKVD 165 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhc---cchHH---HHH-HHh-cCCC
Confidence 5789999999999999999999543 333335666543 344444333211 11111 122 222 2345
Q ss_pred EEEEeCCCCCChHHHh--ccccccCCC-CCCcEEEEecCC
Q 042290 126 LLVLDDMWSENYDVRA--NLCKPFKAG-LPGSKIIVTTRN 162 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~--~l~~~l~~~-~~~~~ilvTtR~ 162 (425)
||||||+-......|. .+...+... .+..-+||||-.
T Consensus 166 LLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 166 LLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999443323343 233333222 122346777754
No 161
>PRK06921 hypothetical protein; Provisional
Probab=97.62 E-value=0.00024 Score=65.23 Aligned_cols=38 Identities=24% Similarity=0.121 Sum_probs=27.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEe
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYV 83 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~ 83 (425)
...+.++|++|+|||.||..+++.... ..-..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~-~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR-KKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh-hcCceEEEEEH
Confidence 456899999999999999999995432 21334566663
No 162
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00012 Score=73.44 Aligned_cols=166 Identities=20% Similarity=0.202 Sum_probs=92.6
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
+.+-+|-++-.++|.+.|.-..-...-+-++++++||+|||||+|++.+++ .....|- -++++.-.+..++-..=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhcccc
Confidence 455689999999999988543222234558999999999999999999998 4444452 33444444433321111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCCh----HHHhccccccCCCCC-------------CcE-EEE
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENY----DVRANLCKPFKAGLP-------------GSK-IIV 158 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~----~~~~~l~~~l~~~~~-------------~~~-ilv 158 (425)
-..+| .=...+...+++. +.+.-|++||.++.... +--..++..|.+..+ =|. +.|
T Consensus 397 RTYIG-----amPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 397 RTYIG-----AMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred ccccc-----cCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 01111 1112233333332 34567899999853211 111122222222111 122 334
Q ss_pred ecCCh-h-h-hhccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 159 TTRNE-G-V-SSMVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 159 TtR~~-~-v-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
||-|. + + +..+... ..+++.+-+++|=.+.-+++.
T Consensus 471 aTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 44442 1 2 2334444 789999999999888777765
No 163
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00021 Score=74.72 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=70.7
Q ss_pred CccccchhhHHHHHHHhhCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
..++|.++.++.|.+.+.....+ .++....+.++|++|+|||.||+.++... .. ..+.+++++.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhcccc----
Confidence 45899999999998888642110 12345678999999999999999998843 22 23344444322211
Q ss_pred HHHHHhcCCCC---CCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCC
Q 042290 95 VILQADAGSVD---VNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKA 149 (425)
Q Consensus 95 ~il~~l~~~~~---~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~ 149 (425)
.+...++.+.. ......+.+.++ .....+|+||+++....+.++.++..+..
T Consensus 529 ~~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred cHHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 11222232111 111122222222 23456999999987777777777776653
No 164
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.60 E-value=5e-05 Score=71.56 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=43.4
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 19 EVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
+++|-++.++++.+++.....+.+...+++.|+|++|+||||||..+++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999765443334568999999999999999999988543
No 165
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.60 E-value=0.00072 Score=64.18 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=68.8
Q ss_pred cccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042290 20 VYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQA 99 (425)
Q Consensus 20 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 99 (425)
+||+...+.++.+.+..-.. ...-|.|+|.+|+||+++|+.+..... +. -..-+-|++.... ...+-..+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~-r~-~~pfv~vnc~~~~-~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSK-RW-QGPLVKLNCAALS-ENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcC-cc-CCCeEEEeCCCCC-hHHHHHHHhcc
Confidence 47887777777777655432 334589999999999999998876321 11 1122334444322 11111111110
Q ss_pred hcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 100 DAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 100 l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
......... ......+. ....-.|+||++..........|...+..+. ...+||.||...
T Consensus 74 ~~g~~~ga~-~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~ 144 (329)
T TIGR02974 74 EAGAFTGAQ-KRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNAD 144 (329)
T ss_pred ccccccCcc-cccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhh
Confidence 000000000 00000011 1223469999997766666666666554321 345888888543
No 166
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.60 E-value=0.00034 Score=62.80 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=50.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHH----hcCC---CCCCCHHH---H
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQA----DAGS---VDVNDLNL---L 112 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~----l~~~---~~~~~~~~---~ 112 (425)
....++.|+|++|+|||++|.+++.... ..-..++|++.. .++...+ .++... +... ....+..+ .
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 3557999999999999999999987432 334568899876 4554433 223222 0000 01122222 2
Q ss_pred HHHHHHHcCCceEEEEEeCC
Q 042290 113 QLQLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 113 ~~~l~~~l~~k~~LLVlDdv 132 (425)
...+...+..+.-++|+|.+
T Consensus 97 i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHhcccEEEEeCc
Confidence 33333334356678889987
No 167
>PRK06526 transposase; Provisional
Probab=97.60 E-value=3.7e-05 Score=69.94 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=51.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
..+.|+|++|+|||+||..+...... ..+. +.|+ +...+...+.... .... ....+... .+.-
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~-~g~~-v~f~------t~~~l~~~l~~~~----~~~~---~~~~l~~l--~~~d 161 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ-AGHR-VLFA------TAAQWVARLAAAH----HAGR---LQAELVKL--GRYP 161 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH-CCCc-hhhh------hHHHHHHHHHHHH----hcCc---HHHHHHHh--ccCC
Confidence 46899999999999999999875332 2222 3332 2333444433221 1111 12223332 2345
Q ss_pred EEEEeCCCCCChHHH--hccccccCCCCCCcEEEEecCCh
Q 042290 126 LLVLDDMWSENYDVR--ANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 126 LLVlDdv~~~~~~~~--~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
||||||+.......+ ..+...+........+|+||...
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 899999954322122 22333322211122488888764
No 168
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.59 E-value=0.00089 Score=68.23 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=75.5
Q ss_pred CCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHH
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITK 94 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 94 (425)
.....++|....++++.+.+..-.. ....|.|+|++|+|||++|+.+.+... ..-...+.+++..-.. ..+.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~--~~~~ 264 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE--TLLE 264 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH--HHHH
Confidence 3456799999999998888765432 334578999999999999999987422 1112234445443321 2211
Q ss_pred HHHHHhcCCCCC--CCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecC
Q 042290 95 VILQADAGSVDV--NDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTR 161 (425)
Q Consensus 95 ~il~~l~~~~~~--~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR 161 (425)
..+ ++..... .........+. ....-.|+||++..........|...+..+. ...+||+||.
T Consensus 265 ~~l--fg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 265 SEL--FGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred HHH--cCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 111 1211000 00000000000 1223468999998777777777776664321 1358888876
Q ss_pred Ch
Q 042290 162 NE 163 (425)
Q Consensus 162 ~~ 163 (425)
..
T Consensus 340 ~~ 341 (534)
T TIGR01817 340 RD 341 (534)
T ss_pred CC
Confidence 53
No 169
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.59 E-value=0.00073 Score=71.46 Aligned_cols=183 Identities=16% Similarity=0.097 Sum_probs=95.1
Q ss_pred CCCCccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
+.-+++.|.+..+++|.+++...-. -+-...+.+.|+|++|+|||+||+.+++.. ...| +.++..
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~--- 246 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGP--- 246 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecH---
Confidence 3345688999999998887643210 011234568899999999999999998843 2211 222211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC-----------hHHHhccccccCCC-CCCcE
Q 042290 88 DAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN-----------YDVRANLCKPFKAG-LPGSK 155 (425)
Q Consensus 88 ~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~~-~~~~~ 155 (425)
.+. . .........+...+.......+.+|+||+++... ......+...+... ..+..
T Consensus 247 ---~i~----~----~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 ---EIM----S----KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred ---HHh----c----ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 110 0 0011112233334444445667899999984310 11122333333222 12333
Q ss_pred EEE-ecCC-hhhhhccC---CCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh
Q 042290 156 IIV-TTRN-EGVSSMVT---TPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP 221 (425)
Q Consensus 156 ilv-TtR~-~~v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 221 (425)
++| ||.. ..+...+. .....+.+...+.++-.+++........- ... .....+++.+.|.-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccc----cCHHHHHHhCCCCC
Confidence 443 4433 22222221 11256778888888888888755422111 111 22456777777754
No 170
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0024 Score=59.38 Aligned_cols=178 Identities=14% Similarity=0.112 Sum_probs=96.4
Q ss_pred CccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
.++=|-++++++|.+...-+-. -+-..++=|.++|++|+|||-||++|+++- . ..|+.+..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T--~-----AtFIrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT--D-----ATFIRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc--C-----ceEEEeccH----
Confidence 3456788889988887644321 023466778999999999999999999942 2 233433321
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcC-CceEEEEEeCCCC-----------CCh---HHHhccccccCCC--CCC
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLK-NKKFLLVLDDMWS-----------ENY---DVRANLCKPFKAG--LPG 153 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~-~k~~LLVlDdv~~-----------~~~---~~~~~l~~~l~~~--~~~ 153 (425)
++.+..+ + +...+...+...-+ ..+++|++|.++. .+. ...-+|+..+... ...
T Consensus 220 ElVqKYi---G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 ELVQKYI---G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHHHHh---c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 2222221 1 11233344444333 5689999999842 111 1222344444433 245
Q ss_pred cEEEEecCChhh-hhcc---CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 154 SKIIVTTRNEGV-SSMV---TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 154 ~~ilvTtR~~~v-~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
.|||..|...++ ...+ +...+.++++.-+.+.-.+.|.-+...-. ....-++ +.|++.|.|.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~----e~la~~~~g~ 356 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDL----ELLARLTEGF 356 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCH----HHHHHhcCCC
Confidence 688877754322 2211 11236777775555555577776653322 1222233 3456666654
No 171
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.56 E-value=0.00021 Score=62.32 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=64.3
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeC----CCC-----CHHH-
Q 042290 22 GREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVS----EDF-----DAVG- 91 (425)
Q Consensus 22 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~----~~~-----~~~~- 91 (425)
.+..+.....+.|.. ..++.+.|++|+|||.||.+.+-+.-..+.|+..+++.-. +.. +..+
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455566666777752 2489999999999999999887765555778877776321 110 0000
Q ss_pred ---HHHHHHHHhcCCCCCCCHHHHHHHH------HHHcCCc---eEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEe
Q 042290 92 ---ITKVILQADAGSVDVNDLNLLQLQL------ENQLKNK---KFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVT 159 (425)
Q Consensus 92 ---~~~~il~~l~~~~~~~~~~~~~~~l------~~~l~~k---~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvT 159 (425)
...-+...+..-......+.+.+.= -.+++|+ ..++|+|++.+....++..++.- .+.+||+|++
T Consensus 76 ~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~ 152 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIIT 152 (205)
T ss_dssp --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEe
Confidence 1111111111111122222222100 1223443 47999999987777777776554 4578999998
Q ss_pred cCCh
Q 042290 160 TRNE 163 (425)
Q Consensus 160 tR~~ 163 (425)
--..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 7654
No 172
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.55 E-value=0.0016 Score=68.84 Aligned_cols=187 Identities=14% Similarity=0.076 Sum_probs=98.4
Q ss_pred CCccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA 89 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 89 (425)
-.++.|.+...+.|.+.+.-+-. -+-..++-+.++|++|+|||+||+.+++.. ...| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH---
Confidence 35577888877777766532110 011234568899999999999999999843 2222 222211
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC--------C----hHHHhccccccCC--CCCCcE
Q 042290 90 VGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE--------N----YDVRANLCKPFKA--GLPGSK 155 (425)
Q Consensus 90 ~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~--------~----~~~~~~l~~~l~~--~~~~~~ 155 (425)
++ +. .....+...+...+...-...+++|+||+++.. . ......++..+.. ...+.-
T Consensus 522 -~l----~~----~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 -EI----LS----KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred -HH----hh----cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11 11 111222233334444444567899999998421 0 0112223333332 123455
Q ss_pred EEEecCChh-hhhcc---CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh-hHHHHh
Q 042290 156 IIVTTRNEG-VSSMV---TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP-LAAKTL 227 (425)
Q Consensus 156 ilvTtR~~~-v~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-Lai~~~ 227 (425)
||.||...+ +...+ +.....+.++..+.++-.++|..+..+... ....+ ...+++.|.|.- -.|..+
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~----l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVD----LEELAEMTEGYTGADIEAV 664 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHcCCCCHHHHHHH
Confidence 666664432 22222 122367888888888888888765432211 11111 455777777643 334443
No 173
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.54 E-value=0.00012 Score=68.41 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=68.2
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 22 GREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 22 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
+|........+++..-.. +...+-+.|+|+.|+|||.||..+++... ...+ .+.++.+. .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH------HHHHHHHHHHh
Confidence 454445555555543221 12345689999999999999999999654 2223 35555542 44444444332
Q ss_pred CCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhc--ccccc-CCC-CCCcEEEEecCC
Q 042290 102 GSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRAN--LCKPF-KAG-LPGSKIIVTTRN 162 (425)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~--l~~~l-~~~-~~~~~ilvTtR~ 162 (425)
. .+.. +.+.. +. +.=||||||+-.+....|.. ++..+ ... ..+..+|+||--
T Consensus 205 ~----~~~~---~~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D----GSVK---EKIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c----CcHH---HHHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 1222 22222 22 34599999996555556653 44433 222 244567777764
No 174
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.53 E-value=0.0025 Score=60.60 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=34.9
Q ss_pred hhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccc
Q 042290 24 EKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVK 72 (425)
Q Consensus 24 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~ 72 (425)
+.-.+.|.+.+..... ..+.+|+|.|.=|+|||++.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4455677777765531 467899999999999999999998855433
No 175
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.53 E-value=0.00096 Score=67.42 Aligned_cols=137 Identities=14% Similarity=0.076 Sum_probs=77.3
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
....++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+.+... ..-...+.+++..-.+ ..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHH
Confidence 456799999999988888866543 345689999999999999999987422 1122334555554322 111111
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 96 ILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 96 il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
+............. .....+.. .+ .-.|+||++..........|...+..+. ...+||.||...
T Consensus 258 lfG~~~g~~~ga~~-~~~g~~~~--a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 258 LFGHVKGAFTGAIS-NRSGKFEL--AD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred hcCccccccCCCcc-cCCcchhh--cC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 11111000000000 00001111 12 2347999998777777777766654322 245899888654
No 176
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0028 Score=61.69 Aligned_cols=131 Identities=17% Similarity=0.115 Sum_probs=75.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 122 (425)
.+...+.+.|++|+|||+||..++. ...|+.+--++-.+-.... .......+...+....++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~s--------------EsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLS--------------ESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCcc--------------HHHHHHHHHHHHHHhhcC
Confidence 4667889999999999999999987 4567755544311110000 000111122233344456
Q ss_pred ceEEEEEeCCCCCChHHHh------------cccccc---CCCCCCcEEEEecCChhhhhccCC---CCceeecCCCCh-
Q 042290 123 KKFLLVLDDMWSENYDVRA------------NLCKPF---KAGLPGSKIIVTTRNEGVSSMVTT---PGAAHSLGNLLR- 183 (425)
Q Consensus 123 k~~LLVlDdv~~~~~~~~~------------~l~~~l---~~~~~~~~ilvTtR~~~v~~~~~~---~~~~~~l~~L~~- 183 (425)
+--.||+||+. ..-+|. .|...+ ++.+...-|+-||....+...|+- ....++++.++.
T Consensus 598 ~lsiivvDdiE--rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 598 PLSIIVVDDIE--RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cceEEEEcchh--hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 66799999993 222222 222222 333334445566666677666552 236789999987
Q ss_pred hhHHHHHHHh
Q 042290 184 DGCLRIFVQH 193 (425)
Q Consensus 184 ~ea~~Lf~~~ 193 (425)
++..+.+...
T Consensus 676 ~~~~~vl~~~ 685 (744)
T KOG0741|consen 676 EQLLEVLEEL 685 (744)
T ss_pred HHHHHHHHHc
Confidence 6676766654
No 177
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.51 E-value=0.00043 Score=61.34 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=51.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHh-----c-----CCCCCCCHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQAD-----A-----GSVDVNDLNLL 112 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l-----~-----~~~~~~~~~~~ 112 (425)
..-.++.|+|++|+|||+++.+++... ......++|++... ++...+.. ++... . ......+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 356899999999999999999988743 23346789998865 55544433 22221 0 01111112222
Q ss_pred HHHHHHHcCC-ceEEEEEeCC
Q 042290 113 QLQLENQLKN-KKFLLVLDDM 132 (425)
Q Consensus 113 ~~~l~~~l~~-k~~LLVlDdv 132 (425)
...+...+.. +.-++|+|.+
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCc
Confidence 3444444433 4568999987
No 178
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.51 E-value=0.0023 Score=67.27 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=74.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|+...+..+.+.+..-.. ....|.|+|++|+|||.+|+.+.+... + .-...+.+++..-. ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~-r-~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG-R-NNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC-C-CCCCeEEEecccCC-hhHhhhhhc
Confidence 4699999988888766654322 234689999999999999999987422 1 11233444444322 111111111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
.......... .......+. ....-.|+||++..........+...+.... ...+||.||...
T Consensus 449 g~~~~~~~g~-~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGA-SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccccccc-ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1110000000 011111121 1223479999997777666666666553321 345899888654
No 179
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00063 Score=66.13 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=60.2
Q ss_pred Cccccchh---hHHHHHHHhhCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHH
Q 042290 18 KEVYGREK---DKEAIVGLLLGDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVG 91 (425)
Q Consensus 18 ~~~vGR~~---e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 91 (425)
+++-|-|+ |+++|++.|.++.. -+++=++=|.++|++|.|||-||++++-...+ -+|...+..|+..-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V------PFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV------PFFYASGSEFDEMF 377 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC------CeEeccccchhhhh
Confidence 34566654 67888888877643 12344567899999999999999999985432 12333344443211
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCC
Q 042290 92 ITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMW 133 (425)
Q Consensus 92 ~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~ 133 (425)
+ ........+.+...-..-+|+|+||.++
T Consensus 378 V-------------GvGArRVRdLF~aAk~~APcIIFIDEiD 406 (752)
T KOG0734|consen 378 V-------------GVGARRVRDLFAAAKARAPCIIFIDEID 406 (752)
T ss_pred h-------------cccHHHHHHHHHHHHhcCCeEEEEechh
Confidence 1 1111223333444445668999999984
No 180
>PRK07261 topology modulation protein; Provisional
Probab=97.51 E-value=0.00024 Score=60.79 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=39.5
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccc-cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVK-KYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
.|.|+|++|+||||||+.+....... -+.+...|-.. ....+.++....+...+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~- 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN--------------------WQERDDDDMIADISNFLLKHD- 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc--------------------cccCCHHHHHHHHHHHHhCCC-
Confidence 48899999999999999998743221 12344444211 112233445555566666555
Q ss_pred EEEEeCCC
Q 042290 126 LLVLDDMW 133 (425)
Q Consensus 126 LLVlDdv~ 133 (425)
.|+|+..
T Consensus 61 -wIidg~~ 67 (171)
T PRK07261 61 -WIIDGNY 67 (171)
T ss_pred -EEEcCcc
Confidence 6778873
No 181
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.50 E-value=6.8e-05 Score=61.72 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=62.3
Q ss_pred ccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccc-cCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042290 21 YGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVK-KYFSFRAWAYVSEDFDAVGITKVILQA 99 (425)
Q Consensus 21 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~il~~ 99 (425)
||+-..++++.+.+..-.. ....|.|+|.+|+||+++|+.+....... ..|.. +.+.. .+
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~-~~----------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCAS-LP----------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHC-TC-----------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhh-Cc-----------
Confidence 5676777777666654322 33467999999999999999887742211 11211 01111 00
Q ss_pred hcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCC-CCCcEEEEecCCh
Q 042290 100 DAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAG-LPGSKIIVTTRNE 163 (425)
Q Consensus 100 l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-~~~~~ilvTtR~~ 163 (425)
.+.+.. . +.-.|+|+|++.-+.+....+...+... ....|+|.||...
T Consensus 62 -------------~~~l~~-a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 -------------AELLEQ-A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -------------HHHHHH-C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -------------HHHHHH-c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111122 1 3346889999777766667777666543 5677999999865
No 182
>PRK08118 topology modulation protein; Reviewed
Probab=97.49 E-value=4.5e-05 Score=64.92 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=27.1
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccc-cCCCeEEE
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVK-KYFSFRAW 80 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~-~~f~~~~w 80 (425)
-|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 48999999999999999999865444 34666665
No 183
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.48 E-value=3.1e-05 Score=63.80 Aligned_cols=89 Identities=20% Similarity=0.110 Sum_probs=49.3
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEE
Q 042290 48 IPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLL 127 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LL 127 (425)
|.|+|++|+|||+||+.+++.. . ....-+.++...+..++....--.-+ . ..-....+...+ .+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~~~~~~~-~-~~~~~~~l~~a~-----~~~~il 69 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGSYDPSNG-Q-FEFKDGPLVRAM-----RKGGIL 69 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCEEET-TT-T-TCEEE-CCCTTH-----HEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceeeeeeccc-c-cccccccccccc-----cceeEE
Confidence 6899999999999999999843 1 22344577777776655432211100 0 000000000000 168999
Q ss_pred EEeCCCCCChHHHhccccccC
Q 042290 128 VLDDMWSENYDVRANLCKPFK 148 (425)
Q Consensus 128 VlDdv~~~~~~~~~~l~~~l~ 148 (425)
|||++.......+..+...+.
T Consensus 70 ~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 70 VLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EESSCGG--HHHHHTTHHHHS
T ss_pred EECCcccCCHHHHHHHHHHHh
Confidence 999996555566666655544
No 184
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00091 Score=69.05 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=86.7
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc---CC-CeEEEEEeCCCCCHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK---YF-SFRAWAYVSEDFDAVGIT 93 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~ 93 (425)
..++||++|++++++.|..... +- -.++|.+|||||++|.-++...-..+ .. +..++ ++ +
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~-sL----D----- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY-SL----D----- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE-Ee----c-----
Confidence 3489999999999999977653 11 35789999999999988877432111 00 11111 10 1
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHcC-CceEEEEEeCCCCCC--------hHHHhccccccCCCCCCcEEE-EecCCh
Q 042290 94 KVILQADAGSVDVNDLNLLQLQLENQLK-NKKFLLVLDDMWSEN--------YDVRANLCKPFKAGLPGSKII-VTTRNE 163 (425)
Q Consensus 94 ~~il~~l~~~~~~~~~~~~~~~l~~~l~-~k~~LLVlDdv~~~~--------~~~~~~l~~~l~~~~~~~~il-vTtR~~ 163 (425)
+........-..+.++....+.+.+. .++.+|++|.++..- .-+-..++.+....+. .++| .||-++
T Consensus 234 --~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~E 310 (786)
T COG0542 234 --LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLDE 310 (786)
T ss_pred --HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHHH
Confidence 11111122334445555555544443 458999999996410 0112223322222212 2444 555443
Q ss_pred hhhhc------cCCCCceeecCCCChhhHHHHHHHhh
Q 042290 164 GVSSM------VTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 164 ~v~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
.-.. +......+.+..-+.+++...+.-..
T Consensus 311 -YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 -YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred -HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 2211 11123678889999999988886543
No 185
>PRK09183 transposase/IS protein; Provisional
Probab=97.46 E-value=0.00016 Score=66.17 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=51.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
..+.|+|++|+|||+||..++..... ..+ .+.++. ...+...+...... .. +...+.+.+ .+.-
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-~G~-~v~~~~------~~~l~~~l~~a~~~----~~---~~~~~~~~~-~~~d 166 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-AGI-KVRFTT------AADLLLQLSTAQRQ----GR---YKTTLQRGV-MAPR 166 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-cCC-eEEEEe------HHHHHHHHHHHHHC----Cc---HHHHHHHHh-cCCC
Confidence 46889999999999999999774322 122 233443 22333333221111 11 122233322 3445
Q ss_pred EEEEeCCCCCChHHHh--ccccccCCC-CCCcEEEEecCCh
Q 042290 126 LLVLDDMWSENYDVRA--NLCKPFKAG-LPGSKIIVTTRNE 163 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~--~l~~~l~~~-~~~~~ilvTtR~~ 163 (425)
++||||+.......+. .+...+... ..+ .+|+||...
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCCC
Confidence 9999999643222222 233333221 123 478888754
No 186
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.46 E-value=0.00021 Score=63.77 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=28.5
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEe
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYV 83 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~ 83 (425)
.++|.|.+|+|||+|+..+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 578999999999999999988 45667877776643
No 187
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0048 Score=57.44 Aligned_cols=171 Identities=8% Similarity=0.001 Sum_probs=99.9
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc--------ccccCCCeEEEEEe-CCCCCHHHHHHHHH
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV--------RVKKYFSFRAWAYV-SEDFDAVGITKVIL 97 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~il 97 (425)
++.+.+.+... .-..+..++|+.|+||+++|..+.+.. ....+-+...++.. +......++. .+.
T Consensus 5 ~~~l~~~i~~~-----~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~ 78 (299)
T PRK07132 5 IKFLDNSATQN-----KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAI 78 (299)
T ss_pred HHHHHHHHHhC-----CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHH
Confidence 34455555332 244677899999999999999987743 11112112333321 1112222221 222
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecC-ChhhhhccCCCCcee
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTR-NEGVSSMVTTPGAAH 176 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR-~~~v~~~~~~~~~~~ 176 (425)
+.+... ..-.+++-++|+|++........+.++..+...+.++.+|++|. ...+.....+....+
T Consensus 79 ~~~~~~--------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~ 144 (299)
T PRK07132 79 NKLYFS--------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVF 144 (299)
T ss_pred HHhccC--------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEE
Confidence 221100 00014677899999987777778888888888777777776554 344444444444789
Q ss_pred ecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHh
Q 042290 177 SLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTL 227 (425)
Q Consensus 177 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~ 227 (425)
++.+++.++....+.... .. ++.+..++..++|.=.|+..+
T Consensus 145 ~f~~l~~~~l~~~l~~~~--~~--------~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 145 NVKEPDQQKILAKLLSKN--KE--------KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred ECCCCCHHHHHHHHHHcC--CC--------hhHHHHHHHHcCCHHHHHHHH
Confidence 999999999988877641 11 144555666666633455553
No 188
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.44 E-value=0.00051 Score=65.17 Aligned_cols=135 Identities=13% Similarity=0.090 Sum_probs=73.3
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|+...+.++.+.+..-.. ...-|.|+|.+|+||+++|+.+.... ...-...+.+++... +...+...+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~-~~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAAL-NENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCC-CHHHHHHHHc
Confidence 4589999998888887765432 23458899999999999999887521 111122334454442 2222222222
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
........... ......+.. ...-.|+||++..........+...+..+. ...+||+||...
T Consensus 79 g~~~~~~~g~~-~~~~g~l~~---a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 79 GHEAGAFTGAQ-KRHPGRFER---ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred cccccccCCcc-cccCCchhc---cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 11100000000 000111111 122358899997777666666666554321 236888887654
No 189
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0014 Score=65.44 Aligned_cols=179 Identities=13% Similarity=0.040 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
+++=|-++-..+|.+...-+-. -+-..++-|.++|+||+|||++|+.+++. ....| +.+..+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH----
Confidence 4444566666666654432211 02246678899999999999999999994 23333 333221
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC-----------hHHHhccccccCCCCC--CcEEE
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN-----------YDVRANLCKPFKAGLP--GSKII 157 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~~~~--~~~il 157 (425)
++ ....-.++...+.+.+++.-+-.+++|+||.++.-. ......|+..+..... +.-||
T Consensus 503 EL--------~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 503 EL--------FSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred HH--------HHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 11 111233444445555555545567999999884210 1122333333332222 22333
Q ss_pred E-ecCChhhhhccCC---CCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC
Q 042290 158 V-TTRNEGVSSMVTT---PGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS 220 (425)
Q Consensus 158 v-TtR~~~v~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 220 (425)
- |.|...+...+-. ....+.++.-+.+.-.++|+.++-+-.- .+.-+ ..+|++++.|.
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~-~~~vd----l~~La~~T~g~ 636 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF-SEDVD----LEELAQATEGY 636 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHhccC
Confidence 2 3354444333222 2356777776777777888888744322 12222 34455555554
No 190
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0019 Score=65.04 Aligned_cols=186 Identities=15% Similarity=0.074 Sum_probs=99.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC--CHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF--DAVGITKV 95 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~ 95 (425)
.+|+--....++..+....+- -..+.|.|.|+.|+|||+||+++++... +.....+.+++++.-. ....+++.
T Consensus 408 ~d~i~~~s~kke~~n~~~spv----~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~ 482 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPV----FRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF 482 (952)
T ss_pred Cceeecchhhhhhhhhhcccc----cccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH
Confidence 444444433444444333332 2446799999999999999999999755 5555667777765432 12222222
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC------CChHHHh----ccccc-------cCCCCCCcEEEE
Q 042290 96 ILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWS------ENYDVRA----NLCKP-------FKAGLPGSKIIV 158 (425)
Q Consensus 96 il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~------~~~~~~~----~l~~~-------l~~~~~~~~ilv 158 (425)
+...+...+...+-++||||++- .+..+|. .+... +........+|.
T Consensus 483 ----------------l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Ia 546 (952)
T KOG0735|consen 483 ----------------LNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIA 546 (952)
T ss_pred ----------------HHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEE
Confidence 22334455667788999999841 1111111 11111 111112234555
Q ss_pred ecCChh-hhhccCCC---CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCC-hhHHHHhh
Q 042290 159 TTRNEG-VSSMVTTP---GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGS-PLAAKTLG 228 (425)
Q Consensus 159 TtR~~~-v~~~~~~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-PLai~~~~ 228 (425)
|..... +...+... .....|.++...+-.++++.......... ..+...-+..+|+|. |.-+.++.
T Consensus 547 t~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~----~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 547 TGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDI----TMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred echhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhh----hhHHHHHHHHhcCCccchhHHHHH
Confidence 555431 21222211 25678999988888887776543222111 113333478888774 55555543
No 191
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.40 E-value=0.0013 Score=58.93 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=54.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCC----------CCCCC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKK----YFSFRAWAYVSEDFDAVGITKVILQADAGS----------VDVND 108 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~----------~~~~~ 108 (425)
..-.++.|+|++|+|||+|+.+++....... .-..++|++....++...+. .+....... ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 3557999999999999999999876422111 11567899887766654443 333322200 11234
Q ss_pred HHHHHHHHHHHc----CCceEEEEEeCCC
Q 042290 109 LNLLQLQLENQL----KNKKFLLVLDDMW 133 (425)
Q Consensus 109 ~~~~~~~l~~~l----~~k~~LLVlDdv~ 133 (425)
.+++...+.... ..+.-|+|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 455555555443 2355689999983
No 192
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.39 E-value=0.0004 Score=69.85 Aligned_cols=85 Identities=20% Similarity=0.196 Sum_probs=59.7
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHc-
Q 042290 42 GRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQL- 120 (425)
Q Consensus 42 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l- 120 (425)
.+..+++.++|++|.||||||.-++++. .| .++=++.++.-+...+-..|...+... ..+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~--------------s~l~ 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNH--------------SVLD 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhc--------------cccc
Confidence 4567899999999999999999998842 23 367788888887777777776665421 112
Q ss_pred -CCceEEEEEeCCCCCChHHHhcccc
Q 042290 121 -KNKKFLLVLDDMWSENYDVRANLCK 145 (425)
Q Consensus 121 -~~k~~LLVlDdv~~~~~~~~~~l~~ 145 (425)
.+++.-||+|.++.......+.++.
T Consensus 384 adsrP~CLViDEIDGa~~~~Vdvils 409 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAPRAAVDVILS 409 (877)
T ss_pred cCCCcceEEEecccCCcHHHHHHHHH
Confidence 2678889999996655333444333
No 193
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.39 E-value=0.00093 Score=59.61 Aligned_cols=44 Identities=18% Similarity=0.035 Sum_probs=32.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
....++.|.|.+|+|||+++.+++... ...-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 356899999999999999999998743 22334577887655443
No 194
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.39 E-value=0.0015 Score=65.47 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=46.6
Q ss_pred CCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEE
Q 042290 14 SVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAY 82 (425)
Q Consensus 14 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~ 82 (425)
|....+++--.+.++++..||...-. +....+++.++|++|+||||.++.++++. .|+..-|.+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 33345667777889999999976432 22345799999999999999999999853 355566753
No 195
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0021 Score=66.06 Aligned_cols=185 Identities=14% Similarity=0.087 Sum_probs=105.1
Q ss_pred CCccccchh---hHHHHHHHhhCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 17 EKEVYGREK---DKEAIVGLLLGDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 17 ~~~~vGR~~---e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
=.++.|-++ |+.++++.|..+.. -+..-++=+.|+|++|+|||-||++++.... +-|++++..-
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGSE--- 379 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGSE--- 379 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechHH---
Confidence 356788765 56677777765532 1234556689999999999999999998533 4455555421
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC---------------CChHHHhccccccCCCC--CC
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWS---------------ENYDVRANLCKPFKAGL--PG 153 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~---------------~~~~~~~~l~~~l~~~~--~~ 153 (425)
..+.+. ........+.+...-.+.++++.+|+++. +....+++++.-+.... .+
T Consensus 380 -----FvE~~~----g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 380 -----FVEMFV----GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred -----HHHHhc----ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 111111 01112223333333356789999998842 11234444444443322 22
Q ss_pred cEEEEecCChhhhh-cc---CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHH
Q 042290 154 SKIIVTTRNEGVSS-MV---TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAA 224 (425)
Q Consensus 154 ~~ilvTtR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 224 (425)
.-++-+|...++.. .+ +.....+.++.-+.....++|.-++-.... ..+..++.+ |+..+-|++=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 33444444433321 11 122367888888888888999888744332 123345555 888888877543
No 196
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.37 E-value=0.00081 Score=60.74 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=36.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccC----CCeEEEEEeCCCCCHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKY----FSFRAWAYVSEDFDAVGI 92 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 92 (425)
..-.++.|+|++|+|||+|+.+++........ -..++|++....++...+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 35579999999999999999998753222221 357899988776665443
No 197
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.35 E-value=0.00073 Score=63.84 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=54.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
..+.++|++|+|||.||..+++... ..-..++++++. .++..+...-.. ...+.... +.. +.+ -=
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~------~l~~~l~~~~~~--~~~~~~~~---~~~-l~~-~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTAD------ELIEILREIRFN--NDKELEEV---YDL-LIN-CD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHH------HHHHHHHHHHhc--cchhHHHH---HHH-hcc-CC
Confidence 5699999999999999999999543 222346666533 233333221111 11111111 222 222 23
Q ss_pred EEEEeCCCCCChHHHh--ccccccCCC-CCCcEEEEecCCh
Q 042290 126 LLVLDDMWSENYDVRA--NLCKPFKAG-LPGSKIIVTTRNE 163 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~--~l~~~l~~~-~~~~~ilvTtR~~ 163 (425)
||||||+.......|. .+...+... ..+..+||||...
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 8999999544323332 233332221 2245688888753
No 198
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.35 E-value=0.0019 Score=59.48 Aligned_cols=172 Identities=20% Similarity=0.154 Sum_probs=95.8
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCH-HHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDA-VGITKVI 96 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i 96 (425)
..++|-.++..+|..++.+..- .+..-.|.|+|+.|.|||.|......+ .++.-...+-|.+.+..-. .-.+..|
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 4589999999999888865421 123346889999999999999888875 2222233444555544332 2345555
Q ss_pred HHHhc-----CCCCCCCHHHHHHHHHHHcC------CceEEEEEeCCCCCChHHHhc-ccccc----CCCCCCcEEEEec
Q 042290 97 LQADA-----GSVDVNDLNLLQLQLENQLK------NKKFLLVLDDMWSENYDVRAN-LCKPF----KAGLPGSKIIVTT 160 (425)
Q Consensus 97 l~~l~-----~~~~~~~~~~~~~~l~~~l~------~k~~LLVlDdv~~~~~~~~~~-l~~~l----~~~~~~~~ilvTt 160 (425)
.+++. ......+..+..+.+-..|+ +-+++.|+|.++-...-.-.. +...+ ....+-|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 55554 11122222233333333332 236788888874221101011 11111 1233556677999
Q ss_pred CChhhh-------hccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 161 RNEGVS-------SMVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 161 R~~~v~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
|-.... ...... .++-++.++.++-..++++..
T Consensus 180 rld~lE~LEKRVKSRFshr-~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHR-VIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccc-eeeccCCCChHHHHHHHHHHh
Confidence 975322 122222 356677888888888888765
No 199
>PTZ00494 tuzin-like protein; Provisional
Probab=97.33 E-value=0.03 Score=53.96 Aligned_cols=172 Identities=10% Similarity=0.072 Sum_probs=104.7
Q ss_pred ccCCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 11 TTSSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 11 ~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
+..+..+..+|.|+.|-..+.+.|.+.+. .+++++.+.|.-|.|||+|.+....... -..++|.+...-+
T Consensus 364 ~~a~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~ED-- 433 (664)
T PTZ00494 364 MLAAAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTED-- 433 (664)
T ss_pred cccccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCcc--
Confidence 34455678899999999888888877653 6889999999999999999999887433 2367888876543
Q ss_pred HHHHHHHHHhc-CCCC--CCCHHHHHHHHHH---HcCCceEEEEEeCCCCCC-hHHHhccccccCCCCCCcEEEEecCCh
Q 042290 91 GITKVILQADA-GSVD--VNDLNLLQLQLEN---QLKNKKFLLVLDDMWSEN-YDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 91 ~~~~~il~~l~-~~~~--~~~~~~~~~~l~~---~l~~k~~LLVlDdv~~~~-~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
-++.+.+.++ +..+ .+-.+-+.+.... ...++.-+||+-=-...+ ...+++... |.....-|+|++----+
T Consensus 434 -tLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplE 511 (664)
T PTZ00494 434 -TLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMK 511 (664)
T ss_pred -hHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHh
Confidence 4567777777 2221 2222333333322 244666677763221111 123333221 11222446777655443
Q ss_pred hhhhccCC--CCceeecCCCChhhHHHHHHHhh
Q 042290 164 GVSSMVTT--PGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 164 ~v~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
.+...... ....|.+++++..+|.++-.+..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 32221111 12678999999999988877653
No 200
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.001 Score=60.54 Aligned_cols=81 Identities=25% Similarity=0.188 Sum_probs=47.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
..-+.++|++|+|||.||.++.++.. +. --.+.++. ..+++..+...... . .....|.+.+.. -
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~~------~~el~~~Lk~~~~~---~----~~~~~l~~~l~~-~ 168 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFIT------APDLLSKLKAAFDE---G----RLEEKLLRELKK-V 168 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEE------HHHHHHHHHHHHhc---C----chHHHHHHHhhc-C
Confidence 34689999999999999999999654 32 23355554 34455555544332 1 122223332222 2
Q ss_pred EEEEEeCCCCCChHHHh
Q 042290 125 FLLVLDDMWSENYDVRA 141 (425)
Q Consensus 125 ~LLVlDdv~~~~~~~~~ 141 (425)
=||||||+-......|.
T Consensus 169 dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 169 DLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CEEEEecccCccCCHHH
Confidence 38999999544333443
No 201
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.28 E-value=0.00017 Score=57.67 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+|+|.|++|+||||+|+.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 202
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00067 Score=61.97 Aligned_cols=79 Identities=10% Similarity=0.219 Sum_probs=49.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccc--cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVK--KYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 122 (425)
-++|.++||||.|||+|++++++...++ +.|....-+.++.. .++..-.. ....-...+.+.+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFs-----ESgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFS-----ESGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHh-----hhhhHHHHHHHHHHHHHhC
Confidence 4789999999999999999999977554 44554555544322 12222111 1233445556666666666
Q ss_pred ceE--EEEEeCC
Q 042290 123 KKF--LLVLDDM 132 (425)
Q Consensus 123 k~~--LLVlDdv 132 (425)
+.. .+.+|.|
T Consensus 248 ~~~lVfvLIDEV 259 (423)
T KOG0744|consen 248 RGNLVFVLIDEV 259 (423)
T ss_pred CCcEEEEEeHHH
Confidence 543 4556888
No 203
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.23 E-value=0.0025 Score=54.01 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=73.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeC---------------------CCC---------------
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVS---------------------EDF--------------- 87 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~---------------------~~~--------------- 87 (425)
.-..+.|+|++|.|||||.+.++...+. -.+.+|+.-. +++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 4468999999999999999999885432 1233443110 000
Q ss_pred ------CHHHH---HHHHHHHhc-------CCCCCCCHHHHHHHHHHHcCCceEEEEEeCCC-C-CChHHHhccccccCC
Q 042290 88 ------DAVGI---TKVILQADA-------GSVDVNDLNLLQLQLENQLKNKKFLLVLDDMW-S-ENYDVRANLCKPFKA 149 (425)
Q Consensus 88 ------~~~~~---~~~il~~l~-------~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~-~-~~~~~~~~l~~~l~~ 149 (425)
...++ ....+...+ -+......++..-.+.+.+-+++-+|+-|.=- + +..-.|+-+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 11112 222222222 11233344555666778888889999998642 1 222344433322223
Q ss_pred CCCCcEEEEecCChhhhhccCCC
Q 042290 150 GLPGSKIIVTTRNEGVSSMVTTP 172 (425)
Q Consensus 150 ~~~~~~ilvTtR~~~v~~~~~~~ 172 (425)
+..|..||++|.+..+...+...
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~~r 206 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMRHR 206 (223)
T ss_pred hhcCcEEEEEeccHHHHHhccCc
Confidence 45799999999998877766543
No 204
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.23 E-value=0.00074 Score=63.55 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 42 GRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 42 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
-+.+..+.|+|++|+|||.+|+.+++..
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 3577899999999999999999999954
No 205
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0017 Score=68.12 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=76.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCC--CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGR--GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~--~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
..++|.++.+..|.+.+.....+... +...+.+.|+.|+|||.||++++. .+-+..+..+-++.++...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhh-------
Confidence 34788888999999988876653333 567788999999999999999988 3334444455555443211
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHcCCce-EEEEEeCCCCCChHHHhccccccCC
Q 042290 96 ILQADAGSVDVNDLNLLQLQLENQLKNKK-FLLVLDDMWSENYDVRANLCKPFKA 149 (425)
Q Consensus 96 il~~l~~~~~~~~~~~~~~~l~~~l~~k~-~LLVlDdv~~~~~~~~~~l~~~l~~ 149 (425)
+.+..+.+..... .+-...|.+.++.++ .+++|||++..+......+...+..
T Consensus 633 vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 3333332221111 122235556666665 4777899977666666655555443
No 206
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.21 E-value=0.0012 Score=57.62 Aligned_cols=86 Identities=22% Similarity=0.137 Sum_probs=48.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC----CCCCCCHHHH-HHHHHH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED-FDAVGITKVILQADAG----SVDVNDLNLL-QLQLEN 118 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~----~~~~~~~~~~-~~~l~~ 118 (425)
+++++++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++- .....+..+. .+.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4689999999999999888887754333 334566665432 2345556667777761 1222333333 333443
Q ss_pred HcCCceEEEEEeCC
Q 042290 119 QLKNKKFLLVLDDM 132 (425)
Q Consensus 119 ~l~~k~~LLVlDdv 132 (425)
.-..+.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 32222337777765
No 207
>PRK06696 uridine kinase; Validated
Probab=97.20 E-value=0.0004 Score=62.21 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=36.5
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 22 GREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 22 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.|.+-+++|.+.+.... .+++.+|+|.|.+|+||||||+.++...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46777888888886543 2467899999999999999999998843
No 208
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.19 E-value=0.0023 Score=55.18 Aligned_cols=119 Identities=14% Similarity=0.110 Sum_probs=64.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeC--CCCCHHH------HHHHHHHHhcC------CCC-CCCH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVS--EDFDAVG------ITKVILQADAG------SVD-VNDL 109 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~------~~~~il~~l~~------~~~-~~~~ 109 (425)
-.+++|.|+.|.|||||++.++... ....+.+++.-. ...+... ...++++.++- ... ....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3589999999999999999998743 223444444211 1112211 11223444431 111 1122
Q ss_pred HHHHHHHHHHcCCceEEEEEeCCC-CCChHHHhccccccCCC-CC-CcEEEEecCChhhh
Q 042290 110 NLLQLQLENQLKNKKFLLVLDDMW-SENYDVRANLCKPFKAG-LP-GSKIIVTTRNEGVS 166 (425)
Q Consensus 110 ~~~~~~l~~~l~~k~~LLVlDdv~-~~~~~~~~~l~~~l~~~-~~-~~~ilvTtR~~~v~ 166 (425)
+...-.+.+.+-..+-++++|+-. ..+......+...+... .. +..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 233334556666777899999973 23334444444444332 12 56788888775443
No 209
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.13 E-value=0.0024 Score=53.66 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=29.5
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
++.|+|++|+|||+++..++... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998843 22345677877665543
No 210
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.13 E-value=0.0013 Score=61.65 Aligned_cols=83 Identities=19% Similarity=0.120 Sum_probs=54.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC------CCCCCCHHHHHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAG------SVDVNDLNLLQLQL 116 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~------~~~~~~~~~~~~~l 116 (425)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++- -....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35579999999999999999998763 23334567888876665542 2333331 11233456666666
Q ss_pred HHHcC-CceEEEEEeCC
Q 042290 117 ENQLK-NKKFLLVLDDM 132 (425)
Q Consensus 117 ~~~l~-~k~~LLVlDdv 132 (425)
...++ +..-++|+|.+
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55544 35669999997
No 211
>PHA02244 ATPase-like protein
Probab=97.13 E-value=0.0027 Score=60.20 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=30.6
Q ss_pred CCccccchhhH----HHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 17 EKEVYGREKDK----EAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 17 ~~~~vGR~~e~----~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..++|..... ..+..++... .-|.|+|++|+|||+||+.+++.
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 34567765443 4455555332 24788999999999999999884
No 212
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.11 E-value=0.00028 Score=70.14 Aligned_cols=50 Identities=26% Similarity=0.278 Sum_probs=40.0
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 19 EVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+++|.++.+++|++.|.....+.....+++.++||+|+||||||+.+++-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999983322212335579999999999999999999873
No 213
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.11 E-value=0.0039 Score=55.93 Aligned_cols=182 Identities=11% Similarity=0.112 Sum_probs=105.0
Q ss_pred cccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc----CCCeEEEEEeCC----------
Q 042290 20 VYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK----YFSFRAWAYVSE---------- 85 (425)
Q Consensus 20 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~---------- 85 (425)
+.++++....+..+... +..+.+.++|++|.||-|.+..+.++.--.+ +-+...|.+-+.
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 66777777777666532 3567899999999999998877766431100 112233332111
Q ss_pred C-----------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE-EEEEeCCCCCChHHHhccccccCCCCCC
Q 042290 86 D-----------FDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF-LLVLDDMWSENYDVRANLCKPFKAGLPG 153 (425)
Q Consensus 86 ~-----------~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~-LLVlDdv~~~~~~~~~~l~~~l~~~~~~ 153 (425)
+ .....+.++++.+.....+.+. -..+.| ++|+-.++.-..+.-..++.....-...
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~-----------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-----------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-----------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 1 1123344445544442211110 012233 6667666554455556666666555567
Q ss_pred cEEEEecCCh-hhhhccCCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh
Q 042290 154 SKIIVTTRNE-GVSSMVTTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL 222 (425)
Q Consensus 154 ~~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 222 (425)
+|+|+..-+. .+-.-..+..-.+.+...+++|....++..+-...- ..+ .+.+.+|+++++|+-.
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLR 223 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLR 223 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHH
Confidence 8888765542 122222222256889999999999999887754332 111 4889999999999743
No 214
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.10 E-value=0.0027 Score=57.35 Aligned_cols=115 Identities=18% Similarity=0.059 Sum_probs=65.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC-------------------
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS------------------- 103 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------------------- 103 (425)
+...++.|.|.+|+|||+|+.+++... ...-..++|++..+. ...+..++. .++-.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCceEEeccccc
Confidence 356799999999999999999986632 123356888887654 344444432 22200
Q ss_pred --CCCCCHHHHHHHHHHHcCC-ceEEEEEeCCC----CCChHHHhccccccCC-CCCCcEEEEecCC
Q 042290 104 --VDVNDLNLLQLQLENQLKN-KKFLLVLDDMW----SENYDVRANLCKPFKA-GLPGSKIIVTTRN 162 (425)
Q Consensus 104 --~~~~~~~~~~~~l~~~l~~-k~~LLVlDdv~----~~~~~~~~~l~~~l~~-~~~~~~ilvTtR~ 162 (425)
....+.+.+...+...+.. +.-++|+|.+. ..+......+...+.. ...+..+++|+..
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~ 164 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHP 164 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 0112335566666666653 55689999973 1222222233222211 1235567777654
No 215
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.09 E-value=0.0056 Score=61.68 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=71.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|....++++.+.+..-.. ....|.|.|.+|+||+.+|+.+.+... +..- ..+-+++..-. ...+..
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~S~-r~~~-pfv~inC~~l~--e~lles-- 281 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQLSG-RRDF-PFVAINCGAIA--ESLLEA-- 281 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHhcC-cCCC-CEEEeccccCC--hhHHHH--
Confidence 4589999988888887754332 334689999999999999999986321 1111 22334443322 122211
Q ss_pred HHhcC-CCCC---CCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCC
Q 042290 98 QADAG-SVDV---NDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRN 162 (425)
Q Consensus 98 ~~l~~-~~~~---~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~ 162 (425)
.+.. .... .........+.. ...-.|+||++..........|...+.... ...|||.||..
T Consensus 282 -eLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 282 -ELFGYEEGAFTGARRGGRTGLIEA---AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred -HhcCCcccccccccccccccchhh---cCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 1211 1000 000000000111 123359999997777666666766654321 13478888765
Q ss_pred h
Q 042290 163 E 163 (425)
Q Consensus 163 ~ 163 (425)
.
T Consensus 358 ~ 358 (526)
T TIGR02329 358 A 358 (526)
T ss_pred C
Confidence 3
No 216
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.06 E-value=0.0043 Score=57.99 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=42.5
Q ss_pred CCcccCCCCCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC
Q 042290 8 PLSTTSSVNEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF 87 (425)
Q Consensus 8 ~~~~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 87 (425)
+.+..+..++. ++=..+....+..++... +.|.|.|++|+|||++|+.++... ... .+.|.+....
T Consensus 36 ~~~~~p~~d~~-y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~l--~~~---~~rV~~~~~l 101 (327)
T TIGR01650 36 RDEHVPDIDPA-YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAARL--NWP---CVRVNLDSHV 101 (327)
T ss_pred CCCCCCCCCCC-ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHHH--CCC---eEEEEecCCC
Confidence 33344444443 444444556677777432 359999999999999999998843 222 2355555554
Q ss_pred CHHH
Q 042290 88 DAVG 91 (425)
Q Consensus 88 ~~~~ 91 (425)
+..+
T Consensus 102 ~~~D 105 (327)
T TIGR01650 102 SRID 105 (327)
T ss_pred Chhh
Confidence 4433
No 217
>PRK09354 recA recombinase A; Provisional
Probab=97.06 E-value=0.0019 Score=61.08 Aligned_cols=96 Identities=18% Similarity=0.049 Sum_probs=60.6
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC----
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAG---- 102 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~---- 102 (425)
...|..+|.-. +=+.-+++-|+|++|+||||||.+++.. ....-..++|++.-..++.. .++.++-
T Consensus 45 i~~LD~~LG~G---Gip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~ 114 (349)
T PRK09354 45 SLALDIALGIG---GLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDN 114 (349)
T ss_pred cHHHHHHhcCC---CCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHH
Confidence 34455556311 1235679999999999999999998773 23334567898877766642 3334431
Q ss_pred --CCCCCCHHHHHHHHHHHcC-CceEEEEEeCC
Q 042290 103 --SVDVNDLNLLQLQLENQLK-NKKFLLVLDDM 132 (425)
Q Consensus 103 --~~~~~~~~~~~~~l~~~l~-~k~~LLVlDdv 132 (425)
.......++....+...++ +..-++|+|.+
T Consensus 115 lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 115 LLVSQPDTGEQALEIADTLVRSGAVDLIVVDSV 147 (349)
T ss_pred eEEecCCCHHHHHHHHHHHhhcCCCCEEEEeCh
Confidence 1123345666666655554 45669999998
No 218
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.04 E-value=0.00088 Score=57.56 Aligned_cols=36 Identities=36% Similarity=0.459 Sum_probs=27.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEE
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWA 81 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv 81 (425)
+..+|.+.|++|+||||+|+.+++. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999884 33445555555
No 219
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.04 E-value=0.0083 Score=62.63 Aligned_cols=132 Identities=15% Similarity=0.106 Sum_probs=72.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|....+.++.+.+..-.. ....|.|+|.+|+||+++|+.+.+... ..-..-+.+++..-. ...+...++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~-~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYP-DEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCC-hHHHHHHhc
Confidence 5689999888888777754432 223478999999999999999987421 111123344444332 222222222
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
.... .. ........+. ....-.|+||++..........|...+..+. ...+||.||...
T Consensus 398 g~~~---~~-~~~~~~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 398 GSDR---TD-SENGRLSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred CCCC---cC-ccCCCCCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 2111 00 0000000000 1123469999998777777777776654321 135788777653
No 220
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.04 E-value=0.0019 Score=60.52 Aligned_cols=83 Identities=19% Similarity=0.118 Sum_probs=53.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC------CCCCCCHHHHHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAG------SVDVNDLNLLQLQL 116 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~------~~~~~~~~~~~~~l 116 (425)
+.-+++.|+|++|+||||||.+++... ...-..++|++..+.++.. .++.++- -......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 355799999999999999999987743 3334557788766655442 2333331 12234455666666
Q ss_pred HHHcC-CceEEEEEeCC
Q 042290 117 ENQLK-NKKFLLVLDDM 132 (425)
Q Consensus 117 ~~~l~-~k~~LLVlDdv 132 (425)
...++ +..-++|+|.+
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 55553 45679999998
No 221
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.01 E-value=0.0037 Score=54.69 Aligned_cols=104 Identities=19% Similarity=0.144 Sum_probs=52.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHc-----
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQL----- 120 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l----- 120 (425)
+++.|.|++|+|||+++..+.......+ ..++++. .... ....+....+.. .... ...+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~a-pT~~----Aa~~L~~~~~~~--a~Ti---~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLA-PTNK----AAKELREKTGIE--AQTI---HSFLYRIPNGDDE 86 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEE-SSHH----HHHHHHHHHTS---EEEH---HHHTTEECCEECC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEEC-CcHH----HHHHHHHhhCcc--hhhH---HHHHhcCCccccc
Confidence 5888999999999999999877433221 2233332 2211 112222222200 0000 00000000
Q ss_pred ----CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 121 ----KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 121 ----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
..+.-+||+|++.-.+...+..+...... .++++|+.--..
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12335999999976666777777766554 477888766544
No 222
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0043 Score=55.83 Aligned_cols=125 Identities=15% Similarity=0.115 Sum_probs=73.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC-----CCCHHHHHHHHHHHhcCC--------CCCCCHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE-----DFDAVGITKVILQADAGS--------VDVNDLN 110 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~--------~~~~~~~ 110 (425)
...+++|+|.+|+|||||++.+..= ...-.+.+++.-.+ .....+...+++..++.. .......
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3458999999999999999999873 23334455554222 112334455566665511 1112222
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCCC-Ch---HHHhccccccCCCCCCcEEEEecCChhhhhccCCC
Q 042290 111 LLQLQLENQLKNKKFLLVLDDMWSE-NY---DVRANLCKPFKAGLPGSKIIVTTRNEGVSSMVTTP 172 (425)
Q Consensus 111 ~~~~~l~~~l~~k~~LLVlDdv~~~-~~---~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~~~~~~ 172 (425)
...-.+.+.|.-++-++|.|..-+. +. .+.-.++..+.. ..|...++.|.+-.+...+...
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhccc
Confidence 2333467778888999999986332 22 222223322222 2467788888887777766544
No 223
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.98 E-value=0.0034 Score=52.00 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=57.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
.+++|.|+.|.|||||++.+..-.. .....+++.-. ..++-..+....+...-.+.+.+-.++-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~-------------~~i~~~~~lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST-------------VKIGYFEQLSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe-------------EEEEEEccCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999987432 23444444210 0011000011222233335556666777
Q ss_pred EEEEeCCC-CCChHHHhccccccCCCCCCcEEEEecCChhhh
Q 042290 126 LLVLDDMW-SENYDVRANLCKPFKAGLPGSKIIVTTRNEGVS 166 (425)
Q Consensus 126 LLVlDdv~-~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~ 166 (425)
++++|+-. ..+......+...+... +..||++|.+....
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 99999973 23334444444444332 24678888775443
No 224
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0018 Score=61.30 Aligned_cols=94 Identities=23% Similarity=0.206 Sum_probs=58.8
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc-CC--
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA-GS-- 103 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-~~-- 103 (425)
..++...|...- -.-.+|.|-|.+|+|||||..+++.+...+. .+.+|+--+...... --+..++ ..
T Consensus 79 ~~EldRVLGGG~----V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~Qik---lRA~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGGL----VPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQIK---LRADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCCc----ccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHHH---HHHHHhCCCccc
Confidence 556666663321 2457899999999999999999998544332 678887554433222 2233343 11
Q ss_pred ---CCCCCHHHHHHHHHHHcCCceEEEEEeCCC
Q 042290 104 ---VDVNDLNLLQLQLENQLKNKKFLLVLDDMW 133 (425)
Q Consensus 104 ---~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~ 133 (425)
....+.+++.+.+.+ .++-++|+|-+.
T Consensus 149 l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred eEEehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 123455555555554 678899999984
No 225
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.97 E-value=0.0085 Score=60.43 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|....++++.+.+..-.. ....|.|.|++|+||+.+|+.+.+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4589999988888887754332 2346899999999999999999874
No 226
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.018 Score=57.38 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=77.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
+.=|.++|++|+|||-||++|++.. .-+ |+++..+ +++.. .-.++.......+++.-..-+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa--g~N-----FisVKGP----ELlNk--------YVGESErAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA--GAN-----FISVKGP----ELLNK--------YVGESERAVRQVFQRARASAP 605 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc--cCc-----eEeecCH----HHHHH--------HhhhHHHHHHHHHHHhhcCCC
Confidence 4558899999999999999999953 333 4444432 12111 122333444455555556789
Q ss_pred EEEEEeCCCCC-----C------hHHHhccccccCCC--CCCcEEEEec-CChhhhhccC---CCCceeecCCCChhhHH
Q 042290 125 FLLVLDDMWSE-----N------YDVRANLCKPFKAG--LPGSKIIVTT-RNEGVSSMVT---TPGAAHSLGNLLRDGCL 187 (425)
Q Consensus 125 ~LLVlDdv~~~-----~------~~~~~~l~~~l~~~--~~~~~ilvTt-R~~~v~~~~~---~~~~~~~l~~L~~~ea~ 187 (425)
|+|++|.++.. + ....++|+.-+... ..|.-||-.| |..-+...+- .....+-++.-+.+|-.
T Consensus 606 CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~ 685 (802)
T KOG0733|consen 606 CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERV 685 (802)
T ss_pred eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHH
Confidence 99999998421 1 12233344444322 2456666555 5443333222 12356777777788888
Q ss_pred HHHHHhhc
Q 042290 188 RIFVQHSL 195 (425)
Q Consensus 188 ~Lf~~~~~ 195 (425)
++++...-
T Consensus 686 ~ILK~~tk 693 (802)
T KOG0733|consen 686 AILKTITK 693 (802)
T ss_pred HHHHHHhc
Confidence 88887764
No 227
>PRK10867 signal recognition particle protein; Provisional
Probab=96.96 E-value=0.0058 Score=59.84 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=28.2
Q ss_pred HHHHHHhhCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 28 EAIVGLLLGDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 28 ~~l~~~L~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++|.+.|..... ...+.+.+|.++|++|+||||++..++..
T Consensus 80 ~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 80 DELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred HHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 456666643211 11245789999999999999988877763
No 228
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.95 E-value=0.0021 Score=54.49 Aligned_cols=114 Identities=18% Similarity=0.062 Sum_probs=62.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC--CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE--DFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNK 123 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k 123 (425)
.+++|.|+.|.|||||.+.++... ......+++.-.. ..+..... ...++...+....+...-.+.+.+-.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDAR---RAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHH---hcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 589999999999999999998742 2344555553211 11111111 111221011222233334455666667
Q ss_pred eEEEEEeCCCC-CChHHHhccccccCCC-CCCcEEEEecCChhh
Q 042290 124 KFLLVLDDMWS-ENYDVRANLCKPFKAG-LPGSKIIVTTRNEGV 165 (425)
Q Consensus 124 ~~LLVlDdv~~-~~~~~~~~l~~~l~~~-~~~~~ilvTtR~~~v 165 (425)
+-+|++|+-.. .+......+...+... ..+..||++|.+...
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 78999999732 3444444444444322 236678888887653
No 229
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.95 E-value=0.0021 Score=58.72 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=38.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVK----KYFSFRAWAYVSEDFDAVGITKVILQAD 100 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l 100 (425)
...+.=|+|++|+|||.|+.+++-..... +.-..++|++....++...+ .+|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl-~~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL-QQIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH-HHHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH-HHHhhcc
Confidence 44688899999999999998876432222 22346899998888887665 4455543
No 230
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.94 E-value=0.0058 Score=59.77 Aligned_cols=42 Identities=29% Similarity=0.367 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 27 KEAIVGLLLGDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 27 ~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.++|.+.|..... ....++.++.++|++|+||||++..++..
T Consensus 78 ~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 78 HEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred HHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3455565543221 11235789999999999999998888774
No 231
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.94 E-value=0.0053 Score=56.04 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=51.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCC-CeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHHH-
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYF-SFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLLQ- 113 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~~- 113 (425)
-.-++|.|.+|+|||+|++.+++. ...+| +.++++-+++... ..++...+...-. ...+........
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999984 34344 3455666666554 4455555543211 111111111111
Q ss_pred ----HHHHHHc---CCceEEEEEeCC
Q 042290 114 ----LQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 114 ----~~l~~~l---~~k~~LLVlDdv 132 (425)
-.+.+++ .++.+||++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1233333 388999999999
No 232
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.93 E-value=0.0036 Score=58.14 Aligned_cols=87 Identities=21% Similarity=0.115 Sum_probs=46.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF-DAVGITKVILQADA-GSVDVNDLNLLQLQLENQLK 121 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~-~~~~~~~~~~~~~~l~~~l~ 121 (425)
..++++|+|++|+||||++..++........-..+..++..... ....-+......++ .-....+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 46799999999999999999988754322111235555543321 12222222333333 111223445555555543 3
Q ss_pred CceEEEEEeCC
Q 042290 122 NKKFLLVLDDM 132 (425)
Q Consensus 122 ~k~~LLVlDdv 132 (425)
+ .=++++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777753
No 233
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.92 E-value=0.0085 Score=50.89 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=59.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccc-cC--CC---eEEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVK-KY--FS---FRAWAYVSEDFD--AVGITKVILQADAGSVDVNDLNLLQLQL 116 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~-~~--f~---~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~l 116 (425)
-.+++|.|+.|.|||||++.++...... +. ++ .+.++ .+... ...+...+.-. ........+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP--WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc--CCCCCCHHHHHHHHH
Confidence 3589999999999999999998753211 10 11 12222 22211 11222222110 111222223333445
Q ss_pred HHHcCCceEEEEEeCCCC-CChHHHhccccccCCCCCCcEEEEecCChhhh
Q 042290 117 ENQLKNKKFLLVLDDMWS-ENYDVRANLCKPFKAGLPGSKIIVTTRNEGVS 166 (425)
Q Consensus 117 ~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~ 166 (425)
.+.+-.++-++++|+--. .+......+...+... +..+|++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 566666778899998632 2333334443333332 35688888776544
No 234
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.011 Score=56.49 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD--AVGITKVILQADAGS-VDVNDLNLLQLQLENQL 120 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~-~~~~~~~~~~~~l~~~l 120 (425)
++++|+|+|++|+||||++..++.... ...+ .+..+... .+. ..+-+......++.+ ....+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 457999999999999999999987433 2222 34444433 232 222223333333311 11345556665554443
Q ss_pred CC-ceEEEEEeCCCC--CChHHHhccccccC
Q 042290 121 KN-KKFLLVLDDMWS--ENYDVRANLCKPFK 148 (425)
Q Consensus 121 ~~-k~~LLVlDdv~~--~~~~~~~~l~~~l~ 148 (425)
.. +.=++++|-.-. .+......+...+.
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 21 234778887732 22334445544443
No 235
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.91 E-value=0.0057 Score=52.64 Aligned_cols=116 Identities=17% Similarity=0.070 Sum_probs=60.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc---CCC-------------CCCCH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA---GSV-------------DVNDL 109 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~---~~~-------------~~~~~ 109 (425)
.+++|.|+.|.|||||++.++.-.. ...+.+++.-. +.......+-..++ ... .....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 5899999999999999999987432 22334443211 11111111111121 100 01111
Q ss_pred HHHHHHHHHHcCCceEEEEEeCCCC-CChHHHhccccccCCCCCCcEEEEecCChhhhh
Q 042290 110 NLLQLQLENQLKNKKFLLVLDDMWS-ENYDVRANLCKPFKAGLPGSKIIVTTRNEGVSS 167 (425)
Q Consensus 110 ~~~~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~ 167 (425)
+...-.+.+.+-.++-++++|+-.. .+......+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2222334555667778999999743 233333333333332223567888888765544
No 236
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0012 Score=66.35 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=91.0
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
+++-+|.++-.++|.+.+.-..-.++-+-++++.+|++|||||++|+.+++. ....|. -++++.-.+..++-..=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkFf---RfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKFF---RFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCceE---EEeccccccHHhhcccc
Confidence 4566899999999999886544334557789999999999999999999984 344442 23455544444331111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC----hHHHhccccccCCC-------------CCCcEEE-E
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN----YDVRANLCKPFKAG-------------LPGSKII-V 158 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~----~~~~~~l~~~l~~~-------------~~~~~il-v 158 (425)
-..++ .=...+.+.|++. +...-|+.||.++.-. -+--..|+..|.+. -.=|+|+ |
T Consensus 485 RTYVG-----AMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 485 RTYVG-----AMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred eeeec-----cCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 11111 1112333444443 3345588889884210 01111122222111 1124555 3
Q ss_pred ecCCh--hh-hhccCCCCceeecCCCChhhHHHHHHHhh
Q 042290 159 TTRNE--GV-SSMVTTPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 159 TtR~~--~v-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
+|-+. .+ ....... ..++|.+-..+|-..+-.++.
T Consensus 559 cTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhh
Confidence 33332 11 1122233 688899988888776666554
No 237
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.89 E-value=0.0021 Score=56.36 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=58.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
++|.|+|+.|+||||++..++... .......++.. .++... ........+.......+.....+.++..+...+=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~--~~~~~~~i~t~-e~~~E~--~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI--NKNKTHHILTI-EDPIEF--VHESKRSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh--hhcCCcEEEEE-cCCccc--cccCccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 479999999999999999887743 22233333332 111110 0000000000000111223345667777777777
Q ss_pred EEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhh
Q 042290 126 LLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVS 166 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~ 166 (425)
++++|++. +.+......... ..|..++.|+....+.
T Consensus 77 ~ii~gEir--d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 77 VILVGEMR--DLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEEcCCC--CHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 99999994 334444333322 2345577777655443
No 238
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.89 E-value=0.002 Score=53.84 Aligned_cols=115 Identities=14% Similarity=0.031 Sum_probs=60.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC---CCCHHHHHHHHHHHhc----CC---CCCCCHHH----
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE---DFDAVGITKVILQADA----GS---VDVNDLNL---- 111 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~l~----~~---~~~~~~~~---- 111 (425)
+.|-|++..|.||||+|...+-. ...+=..+.++..-. ......++..+ ..+. .. ....+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 47889999999999999887663 222222344433222 23333333333 1111 00 00111111
Q ss_pred ---HHHHHHHHcCC-ceEEEEEeCCCC---CChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 112 ---LQLQLENQLKN-KKFLLVLDDMWS---ENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 112 ---~~~~l~~~l~~-k~~LLVlDdv~~---~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
..+..++.+.. +-=|||||++-. ...-..+.+...+.....+..+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11222333333 445999999821 11223344555566666778999999985
No 239
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.87 E-value=0.0062 Score=59.74 Aligned_cols=57 Identities=19% Similarity=0.054 Sum_probs=34.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED-FDAVGITKVILQADA 101 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~ 101 (425)
.++.+|.++|.+|+||||++..++..... ..+ .+..+++... ....+.+..+...++
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~g 150 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIG 150 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 35789999999999999999999875432 222 3344443321 112334455555544
No 240
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.86 E-value=0.0072 Score=54.62 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=34.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
+...++.|.|++|+|||+||.+++.... ..-..++|++... +...+...
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHH
Confidence 3568999999999999999998766321 2345688888655 34444444
No 241
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.028 Score=51.90 Aligned_cols=132 Identities=9% Similarity=0.022 Sum_probs=76.8
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccccc-----------CCCeEEEEEeCCCCCHHHHHHH
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK-----------YFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~-----------~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
-+.|...+... .-.....++|+.|+||+++|..++...--.. ..+...|+.-...
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~--------- 71 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK--------- 71 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---------
Confidence 35566666443 2456788999999999999998876431100 0111112210000
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHc-----CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhhhcc
Q 042290 96 ILQADAGSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVSSMV 169 (425)
Q Consensus 96 il~~l~~~~~~~~~~~~~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~~~~ 169 (425)
...-..++..+ +.+.+ .++.-++|+|+++....+.++.++..+.....++.+|++|.+ ..+....
T Consensus 72 --------~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 72 --------GRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred --------CCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence 00012333222 22222 245568999999988889999999999887777766666655 4454444
Q ss_pred CCCCceeecCCC
Q 042290 170 TTPGAAHSLGNL 181 (425)
Q Consensus 170 ~~~~~~~~l~~L 181 (425)
.+....+.+.++
T Consensus 143 ~SRcq~~~~~~~ 154 (290)
T PRK05917 143 RSRSLSIHIPME 154 (290)
T ss_pred HhcceEEEccch
Confidence 433356666665
No 242
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.056 Score=50.05 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=51.5
Q ss_pred CceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhhhccCCCCceeecCCCChhhHHHHHHH
Q 042290 122 NKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVSSMVTTPGAAHSLGNLLRDGCLRIFVQ 192 (425)
Q Consensus 122 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 192 (425)
+++-++|||+++.......+.|+..+.....++.+|++|.+ ..+...+.+....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 45669999999988889999999999887777766666654 456555555556788866 66666666654
No 243
>PRK14974 cell division protein FtsY; Provisional
Probab=96.82 E-value=0.0088 Score=56.62 Aligned_cols=99 Identities=17% Similarity=0.067 Sum_probs=51.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC--HHHHHHHHHHHhcC----CCCCCCHHH-HHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD--AVGITKVILQADAG----SVDVNDLNL-LQLQ 115 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~----~~~~~~~~~-~~~~ 115 (425)
+++.++.++|++|+||||++..++.... ...+ .++.+. .+.+. ...-+......++. .....+... ..+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 3568999999999999998888876432 2223 233343 22222 22334445555541 112223222 2233
Q ss_pred HHHHcCCceEEEEEeCCCCC--ChHHHhccc
Q 042290 116 LENQLKNKKFLLVLDDMWSE--NYDVRANLC 144 (425)
Q Consensus 116 l~~~l~~k~~LLVlDdv~~~--~~~~~~~l~ 144 (425)
+........-++++|-.-.. +...+..+.
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~ 245 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMHTDANLMDELK 245 (336)
T ss_pred HHHHHhCCCCEEEEECCCccCCcHHHHHHHH
Confidence 33322222238999988432 233444443
No 244
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.82 E-value=0.0024 Score=61.44 Aligned_cols=95 Identities=24% Similarity=0.151 Sum_probs=54.9
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC---
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS--- 103 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~--- 103 (425)
+.+|...|... -..-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ...+. .-+..++..
T Consensus 68 i~eLD~vLgGG----i~~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~ 138 (372)
T cd01121 68 IEELDRVLGGG----LVPGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQIK-LRADRLGISTEN 138 (372)
T ss_pred CHHHHHhhcCC----ccCCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHHH-HHHHHcCCCccc
Confidence 34555555321 12457999999999999999999987432 22245778775433 23222 223334311
Q ss_pred ---CCCCCHHHHHHHHHHHcCCceEEEEEeCCC
Q 042290 104 ---VDVNDLNLLQLQLENQLKNKKFLLVLDDMW 133 (425)
Q Consensus 104 ---~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~ 133 (425)
....+.+.+.+.+. ..+.-++|+|.+.
T Consensus 139 l~l~~e~~le~I~~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 139 LYLLAETNLEDILASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred EEEEccCcHHHHHHHHH---hcCCcEEEEcchH
Confidence 11234444444443 2456789999983
No 245
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.00091 Score=54.99 Aligned_cols=26 Identities=42% Similarity=0.474 Sum_probs=22.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
.--|+|+|++|+||||+++.+.+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 34689999999999999999998544
No 246
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.82 E-value=0.007 Score=51.84 Aligned_cols=113 Identities=22% Similarity=0.253 Sum_probs=59.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC---cccccC---CC--eEEEEEeCCCCCHHHHHHHHHHHhc-CCC------CCCC-
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND---VRVKKY---FS--FRAWAYVSEDFDAVGITKVILQADA-GSV------DVND- 108 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~---~~~~~~---f~--~~~wv~~~~~~~~~~~~~~il~~l~-~~~------~~~~- 108 (425)
-.+++|.|+.|+|||||.+.+..+ ...... +. ...|+ .+ .+.+..++ ... ..-+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 358999999999999999988632 111111 10 12232 11 23444444 111 1111
Q ss_pred HHHHHHHHHHHcCCc--eEEEEEeCCCC-CChHHHhccccccCCC-CCCcEEEEecCChhhhh
Q 042290 109 LNLLQLQLENQLKNK--KFLLVLDDMWS-ENYDVRANLCKPFKAG-LPGSKIIVTTRNEGVSS 167 (425)
Q Consensus 109 ~~~~~~~l~~~l~~k--~~LLVlDdv~~-~~~~~~~~l~~~l~~~-~~~~~ilvTtR~~~v~~ 167 (425)
.+...-.+...+..+ +-+|++|+--. .+......+...+... ..|..||++|.+.....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122233345555556 67889998632 3333444444433321 24667888888875543
No 247
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.81 E-value=0.0006 Score=58.13 Aligned_cols=44 Identities=25% Similarity=0.100 Sum_probs=30.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
+..++.+.|+.|+|||.||+.+++.... +.....+-++.+.-..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 3468999999999999999999884321 3445566666655433
No 248
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.80 E-value=0.006 Score=57.60 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=39.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKK----YFSFRAWAYVSEDFDAVGITKVILQAD 100 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l 100 (425)
...++-|+|++|+|||+++.+++....... .-..++|++....++...+. +++..+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 467889999999999999999876432211 11378999988878776553 344443
No 249
>PRK07667 uridine kinase; Provisional
Probab=96.77 E-value=0.0018 Score=56.61 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=30.6
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+++|.+.+.... +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456677775543 355899999999999999999998843
No 250
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.019 Score=58.11 Aligned_cols=180 Identities=17% Similarity=0.104 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHhhCCCCC------C-CCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN------S-GRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~------~-~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
.++=|..+..+-|.+.+.-+... . -+...-|.++|++|+|||-||.+++.... .-++++..+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----
Confidence 44556666666666666544320 0 12334588999999999999999988432 335666543
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC-----------hHHHhccccccCC--CCCCcEEE
Q 042290 91 GITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN-----------YDVRANLCKPFKA--GLPGSKII 157 (425)
Q Consensus 91 ~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~--~~~~~~il 157 (425)
+++...+ ..+.+...+.+.+.-.-++|+|++|.+++-. ....++++..+.. +-.|.-|+
T Consensus 736 ElL~KyI--------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 736 ELLSKYI--------GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHHHHh--------cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEE
Confidence 2222221 2334455566666667899999999985411 1234445555442 23466666
Q ss_pred -EecCChhhhhccCCC---CceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCCh
Q 042290 158 -VTTRNEGVSSMVTTP---GAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSP 221 (425)
Q Consensus 158 -vTtR~~~v~~~~~~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 221 (425)
.|||.+-+...+-.. .+.+.-+.-++.+-.+.|......-.. ... --.+.++.++.|..
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~----vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTD----VDLECLAQKTDGFT 870 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccc----cchHHHhhhcCCCc
Confidence 466765333222111 122223333444555666554321111 111 22455666776654
No 251
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.0049 Score=55.40 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=65.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccc-cc----------CC---CeEEEEEeCC----CC--CH----------------
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRV-KK----------YF---SFRAWAYVSE----DF--DA---------------- 89 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~-~~----------~f---~~~~wv~~~~----~~--~~---------------- 89 (425)
.+++|+|+.|.|||||.+.+..-..- ++ .. ..+.||.-.. .+ +.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 68999999999999999999772210 00 01 2345553211 11 11
Q ss_pred ------HHHHHHHHHHhc------CCCCCCCH-HHHHHHHHHHcCCceEEEEEeCCC----CCChHHHhccccccCCCCC
Q 042290 90 ------VGITKVILQADA------GSVDVNDL-NLLQLQLENQLKNKKFLLVLDDMW----SENYDVRANLCKPFKAGLP 152 (425)
Q Consensus 90 ------~~~~~~il~~l~------~~~~~~~~-~~~~~~l~~~l~~k~~LLVlDdv~----~~~~~~~~~l~~~l~~~~~ 152 (425)
.+.....++.++ .....-+. +...-.|.+.|..++=||+||.-. .......-.++..+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 133344444444 11222222 333445678888899999999842 12223333344444443
Q ss_pred CcEEEEecCChh
Q 042290 153 GSKIIVTTRNEG 164 (425)
Q Consensus 153 ~~~ilvTtR~~~ 164 (425)
|+.||++|.+-.
T Consensus 189 g~tIl~vtHDL~ 200 (254)
T COG1121 189 GKTVLMVTHDLG 200 (254)
T ss_pred CCEEEEEeCCcH
Confidence 889999998853
No 252
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.76 E-value=0.003 Score=63.93 Aligned_cols=136 Identities=13% Similarity=0.014 Sum_probs=71.1
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
-..++|....+.++.+.+..-.. ....|.|+|..|+||+.+|+.+... ..+ .-..-+.+++..-. ...+-..+
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~-s~r-~~~pfv~inca~~~-~~~~e~el 275 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLR-SPR-GKKPFLALNCASIP-DDVVESEL 275 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHh-CCC-CCCCeEEeccccCC-HHHHHHHh
Confidence 35799999888887776643321 2234889999999999999997652 111 11223445554432 11111111
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
............ +.....+.. ...-.|+||+++.........+...+..+. ...+||.||...
T Consensus 276 FG~~~~~~~~~~-~~~~g~~e~---a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 276 FGHAPGAYPNAL-EGKKGFFEQ---ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred cCCCCCCcCCcc-cCCCChhhh---cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 110000000000 000000111 122357899998776666666666554321 234888887654
No 253
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.75 E-value=0.005 Score=57.84 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=40.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVK----KYFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
..-+++-|+|++|+|||+|+.+++-..... ..-..++|++....++...+. ++++.++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence 355788999999999999998876422211 122468999988888877664 4555554
No 254
>PRK05973 replicative DNA helicase; Provisional
Probab=96.75 E-value=0.015 Score=52.17 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=59.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc-C-----------CCCCCCHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA-G-----------SVDVNDLNL 111 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-~-----------~~~~~~~~~ 111 (425)
+..++.|.|.+|+|||+++.+++.... .+-..+++++.... ..++...+.. ++ . ..+....+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~~s-~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRLRA-LGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHHHH-cCCChHHhccceEeecCCCCCHHH
Confidence 446899999999999999999877432 22345677766543 3344333322 12 0 011122333
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCC----ChHHHhccccccCC--CCCCcEEEEecCCh
Q 042290 112 LQLQLENQLKNKKFLLVLDDMWSE----NYDVRANLCKPFKA--GLPGSKIIVTTRNE 163 (425)
Q Consensus 112 ~~~~l~~~l~~k~~LLVlDdv~~~----~~~~~~~l~~~l~~--~~~~~~ilvTtR~~ 163 (425)
....+... .+.-++|+|.+... .......+...|.. ...|..+|+|+...
T Consensus 138 ii~~l~~~--~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~ 193 (237)
T PRK05973 138 IIARLASA--PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQID 193 (237)
T ss_pred HHHHHHHh--hCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 33333332 23459999998321 11111221111111 23577888888654
No 255
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.75 E-value=0.0063 Score=57.61 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=40.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKY----FSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
...++-|+|++|+|||+++.+++........ -..++|++....++...+. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 5678999999999999999998764322111 1478999988877776654 3344443
No 256
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.032 Score=53.77 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=76.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
|=-.++||||+|||+++.++++... |+ +.=+.++...+-.+ ++.++.. ...+-
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----yd-IydLeLt~v~~n~d-Lr~LL~~---------------------t~~kS 288 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YD-IYDLELTEVKLDSD-LRHLLLA---------------------TPNKS 288 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cc-eEEeeeccccCcHH-HHHHHHh---------------------CCCCc
Confidence 4467999999999999999999543 33 22233333222222 2222222 13345
Q ss_pred EEEEeCCCCC--------C----------hHHHhccccccCC---CCCCcEEE-EecCChh-hhhc-cC--CCCceeecC
Q 042290 126 LLVLDDMWSE--------N----------YDVRANLCKPFKA---GLPGSKII-VTTRNEG-VSSM-VT--TPGAAHSLG 179 (425)
Q Consensus 126 LLVlDdv~~~--------~----------~~~~~~l~~~l~~---~~~~~~il-vTtR~~~-v~~~-~~--~~~~~~~l~ 179 (425)
+|||.|++-. . ...+.-|+..+.. ...+-||| +||-..+ +... +. .....+.+.
T Consensus 289 IivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mg 368 (457)
T KOG0743|consen 289 ILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMG 368 (457)
T ss_pred EEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcC
Confidence 7777777311 0 0111223333221 11123555 5555432 1111 11 123578888
Q ss_pred CCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhh
Q 042290 180 NLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGL 230 (425)
Q Consensus 180 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~ 230 (425)
-=+.+.-..|+........ ++ .++.+|.+...|.-+.=..++..
T Consensus 369 yCtf~~fK~La~nYL~~~~---~h----~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 369 YCTFEAFKTLASNYLGIEE---DH----RLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred CCCHHHHHHHHHHhcCCCC---Cc----chhHHHHHHhhcCccCHHHHHHH
Confidence 8888888888888764432 12 34444555444544443444433
No 257
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.011 Score=54.31 Aligned_cols=87 Identities=20% Similarity=0.069 Sum_probs=57.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHH-hc-----CCCCCCCHHHHHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQA-DA-----GSVDVNDLNLLQLQL 116 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-l~-----~~~~~~~~~~~~~~l 116 (425)
+..+++=|+|+.|+||||+|.+++- ..+..-..++|++.-..+++..+.. +... +. ..........+.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 4668899999999999999998776 3344445789999888888766533 3333 22 122222233334444
Q ss_pred HHHcCCceEEEEEeCC
Q 042290 117 ENQLKNKKFLLVLDDM 132 (425)
Q Consensus 117 ~~~l~~k~~LLVlDdv 132 (425)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4444444569999998
No 258
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.72 E-value=0.005 Score=58.42 Aligned_cols=58 Identities=17% Similarity=0.041 Sum_probs=40.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccc----ccCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRV----KKYFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
....+.-|+|++|+|||+|+.+++-.... ...-..++|++....++...+.. +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 35578889999999999999988632221 11224689999988888777544 555554
No 259
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.71 E-value=0.01 Score=50.84 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=56.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEE------eCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAY------VSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQ 119 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~ 119 (425)
.+++|.|+.|+|||||++.++.-.. .....+++. +.+... ....+...-.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~-----------------LSgGq~qrv~lara 85 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID-----------------LSGGELQRVAIAAA 85 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC-----------------CCHHHHHHHHHHHH
Confidence 5899999999999999999887432 222333321 111110 11122233345556
Q ss_pred cCCceEEEEEeCCCC-CChHHHhccccccCCC-CC-CcEEEEecCChhhhh
Q 042290 120 LKNKKFLLVLDDMWS-ENYDVRANLCKPFKAG-LP-GSKIIVTTRNEGVSS 167 (425)
Q Consensus 120 l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~-~~-~~~ilvTtR~~~v~~ 167 (425)
+..++-++++|+--. .+......+...+... .. +..||++|.+.....
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 666778999998732 3333333333333221 12 356777777754433
No 260
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.71 E-value=0.0033 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+|.|.|++|+||||+|+.+++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 261
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.013 Score=59.18 Aligned_cols=134 Identities=18% Similarity=0.112 Sum_probs=77.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 122 (425)
...+.+.++|++|+|||.||+++++.. ..+| +.+... +. .+..-......+...+....+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~--~~~f-----i~v~~~-~l-----------~sk~vGesek~ir~~F~~A~~~ 334 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES--RSRF-----ISVKGS-EL-----------LSKWVGESEKNIRELFEKARKL 334 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC--CCeE-----EEeeCH-HH-----------hccccchHHHHHHHHHHHHHcC
Confidence 456689999999999999999999932 2223 222221 11 0112233334444555555568
Q ss_pred ceEEEEEeCCCC------CC-----hHHHhccccccCCC--CCCcEEEEecCCh-hhhhccC---CCCceeecCCCChhh
Q 042290 123 KKFLLVLDDMWS------EN-----YDVRANLCKPFKAG--LPGSKIIVTTRNE-GVSSMVT---TPGAAHSLGNLLRDG 185 (425)
Q Consensus 123 k~~LLVlDdv~~------~~-----~~~~~~l~~~l~~~--~~~~~ilvTtR~~-~v~~~~~---~~~~~~~l~~L~~~e 185 (425)
.+++|++|.++. .. ......++..+... ..+..+|-||-.. .+...+. .....+.+..-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 899999999942 11 12333444444322 2334445444432 2221111 223678888999999
Q ss_pred HHHHHHHhhc
Q 042290 186 CLRIFVQHSL 195 (425)
Q Consensus 186 a~~Lf~~~~~ 195 (425)
..+.|..+..
T Consensus 415 r~~i~~~~~~ 424 (494)
T COG0464 415 RLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHhc
Confidence 9999998874
No 262
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.70 E-value=0.0011 Score=53.49 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=19.5
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 042290 48 IPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~ 68 (425)
|.|.|.+|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999884
No 263
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.68 E-value=0.0077 Score=51.51 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999988743
No 264
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.68 E-value=0.0078 Score=56.71 Aligned_cols=58 Identities=16% Similarity=0.040 Sum_probs=38.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccc---c-CCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVK---K-YFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
....++.|+|++|+|||+|+..++...... + .-..++|++....++...+ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 356899999999999999999887522111 1 1235789988777776653 34444443
No 265
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0083 Score=61.12 Aligned_cols=101 Identities=22% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCCCccccchhhHHHHHHHhhCCCC-----C-CCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 15 VNEKEVYGREKDKEAIVGLLLGDDL-----N-SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 15 ~~~~~~vGR~~e~~~l~~~L~~~~~-----~-~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
+.=.++=|-++-..+|.+-+.-+-. + +-.+.+=|.++|++|+|||-||++|+.... .-|++|..+
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP-- 739 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP-- 739 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH--
Confidence 3335566778878888776643211 0 113355688999999999999999998532 346666543
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCC
Q 042290 89 AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWS 134 (425)
Q Consensus 89 ~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~ 134 (425)
++ ++. .-..+.+...+.+.+.-..++|+|++|.+++
T Consensus 740 --EL----LNM----YVGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 --EL----LNM----YVGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred --HH----HHH----HhcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 11 111 2234556666667777678999999999954
No 266
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.035 Score=50.50 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=54.9
Q ss_pred ccccchhhHHHHHHHhhCCCC------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHH
Q 042290 19 EVYGREKDKEAIVGLLLGDDL------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGI 92 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 92 (425)
++-|-+...+.|.+...-+-. +.....+-|.++|++|.|||-||++|+.... ..|++++... +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSSD----L 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSSD----L 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehHH----H
Confidence 355666666666554322211 1234568899999999999999999998532 3344554321 1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHc-CCceEEEEEeCCC
Q 042290 93 TKVILQADAGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMW 133 (425)
Q Consensus 93 ~~~il~~l~~~~~~~~~~~~~~~l~~~l-~~k~~LLVlDdv~ 133 (425)
... .....+.+...|.+.. .+++-+|++|.++
T Consensus 203 vSK---------WmGESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 203 VSK---------WMGESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred HHH---------HhccHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 111 1112233333333332 4788999999984
No 267
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.014 Score=51.54 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-.+++|+|++|+|||||++.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 268
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.65 E-value=0.0023 Score=59.97 Aligned_cols=52 Identities=27% Similarity=0.362 Sum_probs=45.3
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...|+|.++.+++|++.|.....+.+..-+++.+.|+.|.||||||..+.+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999997766555667899999999999999999998773
No 269
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.62 E-value=0.017 Score=56.84 Aligned_cols=86 Identities=20% Similarity=0.055 Sum_probs=45.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHcCC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQADA-GSVDVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~-~~~~~~~~~~~~~~l~~~l~~ 122 (425)
.++++++|++|+||||++..++........-..+..++....-. ..+-+....+.++ .-....+..++...+... .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46899999999999999988876432112223455665433211 1112222233333 111223344555555543 2
Q ss_pred ceEEEEEeCC
Q 042290 123 KKFLLVLDDM 132 (425)
Q Consensus 123 k~~LLVlDdv 132 (425)
..=++++|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 2458889966
No 270
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0043 Score=54.24 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=42.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc---CCCCCCCHHHHHHHHHHHc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA---GSVDVNDLNLLQLQLENQL 120 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~---~~~~~~~~~~~~~~l~~~l 120 (425)
++-+|+|.|.+|+||||+|+.++... .... +.-++...-..... ......... ..+...+.+-+.+.|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~--~~~~--~~~I~~D~YYk~~~-~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL--GVEK--VVVISLDDYYKDQS-HLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh--CcCc--ceEeeccccccchh-hcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 56899999999999999999999843 3221 12222111111000 000000111 2334556677777788777
Q ss_pred CCce
Q 042290 121 KNKK 124 (425)
Q Consensus 121 ~~k~ 124 (425)
.+++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 7776
No 271
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.60 E-value=0.017 Score=51.15 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCceEEEEEeCCC-CCChHHHhccccccCCC--CCCcEEEEecCChhhhhccC
Q 042290 110 NLLQLQLENQLKNKKFLLVLDDMW-SENYDVRANLCKPFKAG--LPGSKIIVTTRNEGVSSMVT 170 (425)
Q Consensus 110 ~~~~~~l~~~l~~k~~LLVlDdv~-~~~~~~~~~l~~~l~~~--~~~~~ilvTtR~~~v~~~~~ 170 (425)
++..-.+.+.|-..+-+|+-|+=- +-+...-..+...+... ..|..||+.|.+..++..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 444556777788888899999742 12222333333333322 34778999999998888654
No 272
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.60 E-value=0.053 Score=50.99 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=34.2
Q ss_pred eeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHH
Q 042290 175 AHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAA 224 (425)
Q Consensus 175 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai 224 (425)
.+++++++.+|+..++.-..-..-- ......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877643321 111333456667777779999754
No 273
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.028 Score=54.37 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=50.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccc--cCCCeEEEEEeCCCCCHH--HHHHHHHHHhcCC-CCCCCHHHHHHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVK--KYFSFRAWAYVSEDFDAV--GITKVILQADAGS-VDVNDLNLLQLQLE 117 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~--~~~~~il~~l~~~-~~~~~~~~~~~~l~ 117 (425)
..+++|.++|+.|+||||.+..++...... .+-..+..+++. .+... .-+....+.++-+ ....+...+...+.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 346799999999999999999888743322 112234445544 33322 2244444444422 22334455555555
Q ss_pred HHcCCceEEEEEeCCC
Q 042290 118 NQLKNKKFLLVLDDMW 133 (425)
Q Consensus 118 ~~l~~k~~LLVlDdv~ 133 (425)
.. .+.-++++|..-
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 43 345688999883
No 274
>PTZ00301 uridine kinase; Provisional
Probab=96.59 E-value=0.0033 Score=55.51 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999999988763
No 275
>PRK05439 pantothenate kinase; Provisional
Probab=96.59 E-value=0.013 Score=54.81 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=44.4
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH--HHHHhcCCCCCCCHHHHHHHHHHH
Q 042290 42 GRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV--ILQADAGSVDVNDLNLLQLQLENQ 119 (425)
Q Consensus 42 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~--il~~l~~~~~~~~~~~~~~~l~~~ 119 (425)
.+.+-+|+|.|.+|+||||+|+.+.........-..+.-++...-......+.. ++..- ..+..-+.+.+...|...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~k-g~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRK-GFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccC-CCcccccHHHHHHHHHHH
Confidence 356789999999999999999988773211101122344444433222221111 11100 123445666677667666
Q ss_pred cCCce
Q 042290 120 LKNKK 124 (425)
Q Consensus 120 l~~k~ 124 (425)
..++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 66654
No 276
>PRK04328 hypothetical protein; Provisional
Probab=96.59 E-value=0.0097 Score=54.19 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=31.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
.-.++.|.|++|+|||+|+.+++... ...-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCC
Confidence 45789999999999999999987642 223456788887654
No 277
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.58 E-value=0.013 Score=53.96 Aligned_cols=87 Identities=17% Similarity=0.090 Sum_probs=47.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH--HHHHHHHHHhc----CCCCCCCHHH-HHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV--GITKVILQADA----GSVDVNDLNL-LQLQ 115 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~il~~l~----~~~~~~~~~~-~~~~ 115 (425)
++.+++.++|++|+||||++..++.... ..-..+.+++.. .+... +-+....+..+ ......+... ..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 4568999999999999999998887432 222345555543 23222 22233333333 1111223322 2344
Q ss_pred HHHHcCCceEEEEEeCC
Q 042290 116 LENQLKNKKFLLVLDDM 132 (425)
Q Consensus 116 l~~~l~~k~~LLVlDdv 132 (425)
+........=++++|-.
T Consensus 147 l~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 44443344457888876
No 278
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.58 E-value=0.0017 Score=53.45 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 042290 47 VIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 279
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.57 E-value=0.017 Score=54.91 Aligned_cols=58 Identities=16% Similarity=0.037 Sum_probs=40.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVK----KYFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
....++-|+|++|+|||+|+..++-..... ..-..++|++....++...+ .++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 356788899999999999998877422211 11236899999888887665 45555554
No 280
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.013 Score=50.09 Aligned_cols=117 Identities=16% Similarity=0.104 Sum_probs=62.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc---CCC---CC--------CC-H
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA---GSV---DV--------ND-L 109 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~---~~~---~~--------~~-~ 109 (425)
-.+++|.|+.|.|||||++.++.... ...+.+++.-....... ..+...++ ... .. -+ .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 35899999999999999999987432 23444544211100000 11111111 110 00 11 1
Q ss_pred HHHHHHHHHHcCCceEEEEEeCCCC-CChHHHhccccccCCC-CCCcEEEEecCChhhhh
Q 042290 110 NLLQLQLENQLKNKKFLLVLDDMWS-ENYDVRANLCKPFKAG-LPGSKIIVTTRNEGVSS 167 (425)
Q Consensus 110 ~~~~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~-~~~~~ilvTtR~~~v~~ 167 (425)
+...-.+...+..++-++++|+-.. -+......+...+... ..|..+|++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1222345566677788999999732 3333444444444332 23667888888765443
No 281
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.57 E-value=0.0086 Score=51.25 Aligned_cols=115 Identities=23% Similarity=0.214 Sum_probs=59.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC--CCCHHHHHHHHHHHhc---CCCC----------CCCHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE--DFDAVGITKVILQADA---GSVD----------VNDLN 110 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~---~~~~----------~~~~~ 110 (425)
.+++|.|+.|.|||||.+.++.... ...+.+++.-.. ....... ...++ .... ....+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHHH
Confidence 5899999999999999999987422 233444432111 1111111 11121 1110 01112
Q ss_pred HHHHHHHHHcCCceEEEEEeCCCC-CChHHHhccccccCCC-CCCcEEEEecCChhhhh
Q 042290 111 LLQLQLENQLKNKKFLLVLDDMWS-ENYDVRANLCKPFKAG-LPGSKIIVTTRNEGVSS 167 (425)
Q Consensus 111 ~~~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~-~~~~~ilvTtR~~~v~~ 167 (425)
...-.+...+-.++-++++|+-.. -+......+...+... ..+..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 222334555666677999999742 2333333333333321 23667888888765543
No 282
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.0091 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+++++|++|+||||++..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999864
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.0073 Score=57.86 Aligned_cols=87 Identities=22% Similarity=0.177 Sum_probs=47.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED-FDAVGITKVILQADAGS-VDVNDLNLLQLQLENQLK 121 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~-~~~~~~~~~~~~l~~~l~ 121 (425)
+..+++++|+.|+||||++..++...........+..+..... ....+-+....+.++.+ ....+..++...+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 3579999999999999999999874322211234555543221 22344445555555521 112222233333333 34
Q ss_pred CceEEEEEeCC
Q 042290 122 NKKFLLVLDDM 132 (425)
Q Consensus 122 ~k~~LLVlDdv 132 (425)
++ -++++|..
T Consensus 215 ~~-DlVLIDTa 224 (374)
T PRK14722 215 NK-HMVLIDTI 224 (374)
T ss_pred CC-CEEEEcCC
Confidence 44 46669988
No 284
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.55 E-value=0.012 Score=52.86 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=32.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
...++.|.|++|+||||||.+++.... +.. ..+++++... +..++...+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL-QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 346999999999999999877766432 222 3466776333 445555555
No 285
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0056 Score=52.66 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=59.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc---CCCC---C----------CC-
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA---GSVD---V----------ND- 108 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~---~~~~---~----------~~- 108 (425)
.+++|.|+.|.|||||++.++.... ...+.+.+.-........-.......+. .... . -+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 5899999999999999999986422 2334444321110000000001111111 1100 0 11
Q ss_pred HHHHHHHHHHHcCCceEEEEEeCCC-CCChHHHhccccccCCC-CC-CcEEEEecCChhhh
Q 042290 109 LNLLQLQLENQLKNKKFLLVLDDMW-SENYDVRANLCKPFKAG-LP-GSKIIVTTRNEGVS 166 (425)
Q Consensus 109 ~~~~~~~l~~~l~~k~~LLVlDdv~-~~~~~~~~~l~~~l~~~-~~-~~~ilvTtR~~~v~ 166 (425)
.+...-.+...+..++-++++|+-. ..+......+...+... .. +..+|++|.+....
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1222233455566677899999863 23444444444444332 12 56788888775443
No 286
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.09 Score=46.65 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=83.9
Q ss_pred cccc-hhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHH
Q 042290 20 VYGR-EKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVG 91 (425)
Q Consensus 20 ~vGR-~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 91 (425)
.||+ ++++++|.+.+.-+-. -+-.+++-+.++|++|.|||-||+.++++ ..+.|+.++.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 5654 6677777776644322 02346677899999999999999999984 23556666643 2
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC-----------C---hHHHhccccccCC--CCCCcE
Q 042290 92 ITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE-----------N---YDVRANLCKPFKA--GLPGSK 155 (425)
Q Consensus 92 ~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~-----------~---~~~~~~l~~~l~~--~~~~~~ 155 (425)
+.+..+.+ ......+.+.-.-..-+-+|+.|.+++. + ....-.++..+.. ..+..+
T Consensus 217 lvqk~ige--------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknik 288 (404)
T KOG0728|consen 217 LVQKYIGE--------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIK 288 (404)
T ss_pred HHHHHhhh--------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceE
Confidence 22222111 0011111111111345678888887431 1 1122234444433 235667
Q ss_pred EEEecCChhhh-hccC---CCCceeecCCCChhhHHHHHHHhh
Q 042290 156 IIVTTRNEGVS-SMVT---TPGAAHSLGNLLRDGCLRIFVQHS 194 (425)
Q Consensus 156 ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 194 (425)
+|..|..-++. ..+- .-.+.++..+-+++.-.++++-+.
T Consensus 289 vimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 289 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 87766443232 2111 112567777777777777776654
No 287
>PRK08233 hypothetical protein; Provisional
Probab=96.53 E-value=0.002 Score=55.60 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
..+|+|.|.+|+||||||..++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998854
No 288
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.52 E-value=0.027 Score=52.00 Aligned_cols=54 Identities=20% Similarity=0.076 Sum_probs=36.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQAD 100 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 100 (425)
...++.|.|.+|+|||+++.+++.... ..+-..++|++... +...+...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 345889999999999999999877532 22234578887655 3455555555443
No 289
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.51 E-value=0.028 Score=58.50 Aligned_cols=159 Identities=18% Similarity=0.147 Sum_probs=80.7
Q ss_pred CccccchhhHHHHHHHhh---CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHH
Q 042290 18 KEVYGREKDKEAIVGLLL---GDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVG 91 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 91 (425)
.++.|-+...+++.+.+. .... .+..-.+-|.|+|++|+|||++|+.+++... ..| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCE---EEEehHH------
Confidence 346676665555544432 2110 0111234489999999999999999988432 222 2222111
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCC----------hH----HHhccccccCC--CCCCcE
Q 042290 92 ITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSEN----------YD----VRANLCKPFKA--GLPGSK 155 (425)
Q Consensus 92 ~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~----------~~----~~~~l~~~l~~--~~~~~~ 155 (425)
+.. .. .......+...+.......+++|+||+++.-. .. ....++..+.. ...+.-
T Consensus 221 ~~~----~~----~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 221 FVE----MF----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred hHH----hh----hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 100 00 01122233334444445678999999984310 01 11222222221 123445
Q ss_pred EEEecCChhh-hhccC---CCCceeecCCCChhhHHHHHHHhhc
Q 042290 156 IIVTTRNEGV-SSMVT---TPGAAHSLGNLLRDGCLRIFVQHSL 195 (425)
Q Consensus 156 ilvTtR~~~v-~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 195 (425)
+|.||...+. ...+. .....+.+...+.++-.+++..+..
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 5556655432 22221 1236788888888888888877653
No 290
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0034 Score=53.81 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999985
No 291
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.50 E-value=0.0021 Score=56.90 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.+..+|+|.|++|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999998843
No 292
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.04 Score=55.65 Aligned_cols=184 Identities=18% Similarity=0.102 Sum_probs=93.9
Q ss_pred CCCCccccchhh---HHHHHHHhhCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC
Q 042290 15 VNEKEVYGREKD---KEAIVGLLLGDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD 88 (425)
Q Consensus 15 ~~~~~~vGR~~e---~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 88 (425)
+.-.+.-|.++. +.++++.|.++.. -+..-++-|.++|++|+|||.||++++....+ .| .+.+.+.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PF-----f~iSGS~- 218 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PF-----FSISGSD- 218 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--Cc-----eeccchh-
Confidence 444567888765 4556666665542 12245667899999999999999999996443 22 2222211
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCC----------ChH----HHhccccccCCCC--C
Q 042290 89 AVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSE----------NYD----VRANLCKPFKAGL--P 152 (425)
Q Consensus 89 ~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~----------~~~----~~~~l~~~l~~~~--~ 152 (425)
..+ .+ -.-......+...+..++-++++++|.++.- ..+ ..++++.-..... .
T Consensus 219 FVe-------mf----VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 219 FVE-------MF----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred hhh-------hh----cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 000 00 1111223344555666677899999988421 112 3333433333322 2
Q ss_pred CcEEEE-ecCChhhhhcc---CCCCceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChh
Q 042290 153 GSKIIV-TTRNEGVSSMV---TTPGAAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPL 222 (425)
Q Consensus 153 ~~~ilv-TtR~~~v~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PL 222 (425)
|..|+. |.|.+-+...+ +...+.+.++.-+...-.+.++-++....- ...- + ...|++.+-|.--
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~V---d-l~~iAr~tpGfsG 356 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDV---D-LKKIARGTPGFSG 356 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcC---C-HHHHhhhCCCccc
Confidence 333333 33443221221 122355666666656666666655432211 1111 1 2237777777543
No 293
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.012 Score=50.33 Aligned_cols=116 Identities=19% Similarity=0.149 Sum_probs=60.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC--CCCHHHHHHHHHHHhc---CCCCC---------CC-H
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE--DFDAVGITKVILQADA---GSVDV---------ND-L 109 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~---~~~~~---------~~-~ 109 (425)
-.+++|.|+.|.|||||.+.++.-.. ...+.+++.-.. ....... ...++ ..... -+ .
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 35899999999999999999988432 233444432111 0011111 11111 11000 01 1
Q ss_pred HHHHHHHHHHcCCceEEEEEeCCCC-CChHHHhccccccCCCCCCcEEEEecCChhhhh
Q 042290 110 NLLQLQLENQLKNKKFLLVLDDMWS-ENYDVRANLCKPFKAGLPGSKIIVTTRNEGVSS 167 (425)
Q Consensus 110 ~~~~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~ 167 (425)
+...-.+...+..++-+|++|+-.. .+......+...+.....+..||++|.+.....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 1122234555666778999999642 333333444333332223467888888765544
No 294
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.48 E-value=0.0091 Score=53.67 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+++.+++|.|++|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998743
No 295
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.48 E-value=0.0035 Score=56.16 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=36.8
Q ss_pred hHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHH
Q 042290 26 DKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGI 92 (425)
Q Consensus 26 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 92 (425)
+..++.+.+.... ++..+|+|+|+||+|||||...+....+.+++--.++-|+-+.+++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4455666665432 46789999999999999999999886554333334444444445544333
No 296
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.48 E-value=0.0085 Score=55.95 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=69.7
Q ss_pred ccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcc-cccCCCeEEE----EEeCCCCC-------
Q 042290 21 YGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR-VKKYFSFRAW----AYVSEDFD------- 88 (425)
Q Consensus 21 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~-~~~~f~~~~w----v~~~~~~~------- 88 (425)
-+|..+..--.++|..+ ....|.+.|.+|+|||.||.+..-..- .++.|..++- +.++++..
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 34555655556666554 568999999999999999977643222 2333442221 22332210
Q ss_pred --HHHHHHHH---HHHhcCCCCCCCHHHHHHHHH---------HHcCCc---eEEEEEeCCCCCChHHHhccccccCCCC
Q 042290 89 --AVGITKVI---LQADAGSVDVNDLNLLQLQLE---------NQLKNK---KFLLVLDDMWSENYDVRANLCKPFKAGL 151 (425)
Q Consensus 89 --~~~~~~~i---l~~l~~~~~~~~~~~~~~~l~---------~~l~~k---~~LLVlDdv~~~~~~~~~~l~~~l~~~~ 151 (425)
..-..+.| ++.+... .......+...+. .+++++ .-++|+|.+.+-...+... .+...+
T Consensus 301 eKm~PWmq~i~DnLE~L~~~-~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikT---iltR~G 376 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSP-NEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKT---ILTRAG 376 (436)
T ss_pred hhccchHHHHHhHHHHHhcc-cccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHH---HHHhcc
Confidence 11111222 2222211 1111222222221 123343 4689999997655444444 444567
Q ss_pred CCcEEEEecCCh
Q 042290 152 PGSKIIVTTRNE 163 (425)
Q Consensus 152 ~~~~ilvTtR~~ 163 (425)
.|+||++|.-..
T Consensus 377 ~GsKIVl~gd~a 388 (436)
T COG1875 377 EGSKIVLTGDPA 388 (436)
T ss_pred CCCEEEEcCCHH
Confidence 899999887654
No 297
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.47 E-value=0.002 Score=59.28 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+-+.++|++|+|||++++.....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcEEEECCCCCchhHHHHhhhcc
Confidence 46799999999999999998874
No 298
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.46 E-value=0.0016 Score=51.88 Aligned_cols=27 Identities=33% Similarity=0.536 Sum_probs=18.7
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccCCC
Q 042290 48 IPITGMGGLGKTTLAQLVFNDVRVKKYFS 76 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~~~~~~f~ 76 (425)
|.|.|.+|+|||++|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 78999999999999999998 4555554
No 299
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.46 E-value=0.0031 Score=52.46 Aligned_cols=36 Identities=31% Similarity=0.100 Sum_probs=26.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEE
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAY 82 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~ 82 (425)
..+|.|+|.+|+||||||+++.+... ..-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEec
Confidence 36899999999999999999998543 3334455554
No 300
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.46 E-value=0.0065 Score=57.85 Aligned_cols=109 Identities=20% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
...++|+++.+..+...+.... .+.+.|++|+|||+||+.++... .. ...++.+.......++....
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~l--~~---~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARAL--GL---PFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHHh--CC---CeEEEecCCCCCHHHhcCch
Confidence 3448999988888877776544 48999999999999999999843 32 24566666666665543332
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHcCC-----ceEEEEEeCCCCCChHHHhcccccc
Q 042290 97 LQADAGSVDVNDLNLLQLQLENQLKN-----KKFLLVLDDMWSENYDVRANLCKPF 147 (425)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~l~~~l~~-----k~~LLVlDdv~~~~~~~~~~l~~~l 147 (425)
.-...... ..-..+..+ -+.++++|.++......-..+...+
T Consensus 90 ~~~~~~~~---------~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 90 AYAALLLE---------PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred hHhhhhcc---------CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHH
Confidence 22111000 000000011 1159999999776655555544443
No 301
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.46 E-value=0.002 Score=56.33 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=43.9
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCC---eEEEEEeCCCCCHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHH
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFS---FRAWAYVSEDFDAVGITKVILQADA-----GSVDVNDLNLLQLQLEN 118 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~il~~l~-----~~~~~~~~~~~~~~l~~ 118 (425)
+|+|.|++|+||||+|+.+....... ... ....++............. -.... .....-+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~-~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR-GIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC-TTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc-CcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 68999999999999999998854322 122 2344443332222222111 11111 12344566777777777
Q ss_pred HcCCceEEE
Q 042290 119 QLKNKKFLL 127 (425)
Q Consensus 119 ~l~~k~~LL 127 (425)
...++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665433
No 302
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.45 E-value=0.0019 Score=45.98 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+|+|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 303
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.45 E-value=0.011 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+|+|.|++|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998743
No 304
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.44 E-value=0.016 Score=58.07 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=71.2
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|....+.++.+.+..... ....+.|.|..|+||+++|+.+..... ......+-+++..- +. +.+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~-~~-~~~~~~l 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR----SDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI-PK-DLIESEL 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC----cCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC-CH-HHHHHHh
Confidence 4588888777777776654321 234578999999999999999877321 11222233443332 22 2222222
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
++.....-... .............-.|+||++..........+...+..+. ...+||+||...
T Consensus 206 --fg~~~~~~~~~-~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 --FGHEKGAFTGA-NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred --cCCCCCCCCCc-ccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 22110000000 0000000111123458999998777777777766554321 245888888654
No 305
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.43 E-value=0.017 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..|+|++|+|||+|+..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999998764
No 306
>PRK06762 hypothetical protein; Provisional
Probab=96.42 E-value=0.0023 Score=54.33 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+.+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 307
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.41 E-value=0.0041 Score=50.33 Aligned_cols=42 Identities=24% Similarity=0.155 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 25 KDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 25 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
++.+++-+.|...- ....+|.+.|..|+||||+++.+++...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44555555554322 1335899999999999999999998643
No 308
>PTZ00035 Rad51 protein; Provisional
Probab=96.40 E-value=0.038 Score=52.60 Aligned_cols=69 Identities=17% Similarity=0.042 Sum_probs=43.1
Q ss_pred HHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 28 EAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVK----KYFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 28 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
..|.++|... =....++.|+|++|+|||+|+..++-..... ..-..++|++....++...+ .++++.++
T Consensus 105 ~~LD~lLgGG----i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 105 TQLDKLLGGG----IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred HHHHHHhCCC----CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 4455555321 2356789999999999999999886532211 12235679987776766553 44444443
No 309
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.0073 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-..|+|.|++|+|||||.+.++-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999865
No 310
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.37 E-value=0.0064 Score=60.21 Aligned_cols=95 Identities=22% Similarity=0.138 Sum_probs=56.0
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC---
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS--- 103 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~--- 103 (425)
+.+|.+.|...- ..-.++.|.|++|+|||||+.+++.... ..-..++|++..+. ...+... ++.++..
T Consensus 66 i~~LD~~LgGGi----~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~ 136 (446)
T PRK11823 66 IGELDRVLGGGL----VPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDN 136 (446)
T ss_pred cHHHHHHhcCCc----cCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhc
Confidence 455666663321 2457999999999999999999987433 22235788876543 2333222 3344311
Q ss_pred ---CCCCCHHHHHHHHHHHcCCceEEEEEeCCC
Q 042290 104 ---VDVNDLNLLQLQLENQLKNKKFLLVLDDMW 133 (425)
Q Consensus 104 ---~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~ 133 (425)
....+.+.+.+.+.+ .+.-++|+|.+.
T Consensus 137 l~~~~e~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 137 LYLLAETNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred EEEeCCCCHHHHHHHHHh---hCCCEEEEechh
Confidence 122344555444432 356689999983
No 311
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.03 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++.|.|++|+|||||++.+..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368899999999999999999985
No 312
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.36 E-value=0.0019 Score=50.44 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEEecCCchHHHHHHHHhcCc
Q 042290 48 IPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~ 69 (425)
|.|+|++|+|||+||..++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988753
No 313
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0037 Score=50.67 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=41.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNK 123 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k 123 (425)
.+-|.|+|.||+|||||+.+++... ..-|+++++-.....+....-+. -.+..-+.+.+.+.|...+...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~vkEn~l~~gyDE~--y~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLVKENNLYEGYDEE--YKCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHHhhhcchhccccc--ccCccccHHHHHHHHHHHHhcC
Confidence 3468999999999999999998632 13477766543322222111111 1233455666777777666543
No 314
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.018 Score=57.24 Aligned_cols=87 Identities=16% Similarity=0.049 Sum_probs=45.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF-DAVGITKVILQADAGS-VDVNDLNLLQLQLENQLK 121 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-~~~~~~~~~~~~l~~~l~ 121 (425)
...+++|+|++|+||||++..++...........+..++..... ...+.+......++.. ....+...+...+.+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 45799999999999999998887643222212334444432211 1122222222333311 1223344455555443 3
Q ss_pred CceEEEEEeCC
Q 042290 122 NKKFLLVLDDM 132 (425)
Q Consensus 122 ~k~~LLVlDdv 132 (425)
+ .=+|++|..
T Consensus 428 ~-~DLVLIDTa 437 (559)
T PRK12727 428 D-YKLVLIDTA 437 (559)
T ss_pred c-CCEEEecCC
Confidence 3 458888887
No 315
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.33 E-value=0.019 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+.+.+|+|.|+.|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999987654
No 316
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.061 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.+++.++|+.|+||||++..++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999999888743
No 317
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.32 E-value=0.057 Score=49.57 Aligned_cols=114 Identities=15% Similarity=0.037 Sum_probs=60.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc--CCC------C-CCCHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA--GSV------D-VNDLNLLQL 114 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~--~~~------~-~~~~~~~~~ 114 (425)
....++|.|+.|+|||||.+.++.... .....+++.-.. ....+-..++..... ... + .+.... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE-eecchhHHHHHHHhcccccccccccccccccchH-HH
Confidence 346899999999999999999998432 223344442111 100001122222221 110 0 011111 11
Q ss_pred HHHHHc-CCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhhh
Q 042290 115 QLENQL-KNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVSS 167 (425)
Q Consensus 115 ~l~~~l-~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~ 167 (425)
.+...+ ...+-++++|.. ...+.+..+...+. .|..+|+||....+..
T Consensus 185 ~~~~~i~~~~P~villDE~--~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEI--GREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHhCCCCEEEEeCC--CcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 122222 246779999998 44455555555543 4778999998765533
No 318
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.31 E-value=0.012 Score=49.80 Aligned_cols=116 Identities=14% Similarity=0.047 Sum_probs=60.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEE--EEEeCCCCCHHHHHHHHHHHhc----CC---CCCCCH------
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRA--WAYVSEDFDAVGITKVILQADA----GS---VDVNDL------ 109 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~il~~l~----~~---~~~~~~------ 109 (425)
.+.|-|++..|.||||.|...+-... ...+...+ |+...........+..+ .+. .. ....+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~-~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL-GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 35788899999999999988776322 22233221 33322223333344332 111 00 011111
Q ss_pred -HHHHHHHHHHcCC-ceEEEEEeCCC---CCChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 110 -NLLQLQLENQLKN-KKFLLVLDDMW---SENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 110 -~~~~~~l~~~l~~-k~~LLVlDdv~---~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
....+..++.+.. +-=|+|||.+- +...-..+++...+.....+..+|+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1122223344443 34599999982 111122334555555666778999999985
No 319
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.30 E-value=0.0035 Score=55.38 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|+|.|++|+|||||++.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 5579999999999999999999874
No 320
>PRK06547 hypothetical protein; Provisional
Probab=96.30 E-value=0.0034 Score=53.60 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....+|.|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46689999999999999999999874
No 321
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.30 E-value=0.026 Score=51.05 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.-.+++|.|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999977
No 322
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.29 E-value=0.0092 Score=59.89 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=71.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|+...+.++...+..... ....|.|+|.+|+|||++|+.+.+... . .-...+-+++..- +...+...+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~s~-~-~~~~~i~i~c~~~-~~~~~~~~lf 210 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRHSP-R-AKAPFIALNMAAI-PKDLIESELF 210 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhcCC-C-CCCCeEeeeCCCC-CHHHHHHHhc
Confidence 4689999888888777654332 334688999999999999999877421 1 1122234444332 2222222211
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
............ .....+. ....-.|+||++..........+...+..+. ...+||+||...
T Consensus 211 g~~~g~~~~~~~-~~~g~~~---~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 283 (469)
T PRK10923 211 GHEKGAFTGANT-IRQGRFE---QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN 283 (469)
T ss_pred CCCCCCCCCCCc-CCCCCee---ECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCC
Confidence 110000000000 0000000 1112257889997766666666666554321 134899988654
No 323
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.28 E-value=0.055 Score=44.78 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.4
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 042290 48 IPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~ 68 (425)
|+|+|.+|+|||||...+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 324
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.27 E-value=0.0075 Score=59.78 Aligned_cols=95 Identities=18% Similarity=0.058 Sum_probs=54.9
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC---
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS--- 103 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~--- 103 (425)
+.+|.++|... -..-.++.|.|.+|+|||||+.+++..... .-..++|++..+. ...+... +..++..
T Consensus 80 i~~LD~vLgGG----i~~GsvilI~G~pGsGKTTL~lq~a~~~a~--~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~ 150 (454)
T TIGR00416 80 FGELDRVLGGG----IVPGSLILIGGDPGIGKSTLLLQVACQLAK--NQMKVLYVSGEES--LQQIKMR-AIRLGLPEPN 150 (454)
T ss_pred cHHHHHHhcCC----ccCCeEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEECcCC--HHHHHHH-HHHcCCChHH
Confidence 45566655322 235579999999999999999998774332 2235778875443 3332221 2223211
Q ss_pred ---CCCCCHHHHHHHHHHHcCCceEEEEEeCCC
Q 042290 104 ---VDVNDLNLLQLQLENQLKNKKFLLVLDDMW 133 (425)
Q Consensus 104 ---~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~ 133 (425)
....+.+.+...+.+ .+.-++|+|.+.
T Consensus 151 l~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 151 LYVLSETNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred eEEcCCCCHHHHHHHHHh---cCCcEEEEecch
Confidence 122345555444433 355689999984
No 325
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.26 E-value=0.014 Score=55.85 Aligned_cols=108 Identities=13% Similarity=0.115 Sum_probs=58.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
+.+.|.|+.|+||||++..+.+. ........++. +.++... ........+.......+.....+.++..++..+=
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd 197 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNKRSLINQREVGLDTLSFANALRAALREDPD 197 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCccceEEccccCCCCcCHHHHHHHhhccCCC
Confidence 68999999999999999998873 33333344443 2222111 1000000011101111223455667788888888
Q ss_pred EEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 126 LLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
+|++|.+. +.+.+...... ...|..++.|....
T Consensus 198 ~i~vgEir--d~~~~~~~l~a---a~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 198 VILIGEMR--DLETVELALTA---AETGHLVFGTLHTN 230 (343)
T ss_pred EEEEeCCC--CHHHHHHHHHH---HHcCCcEEEEEcCC
Confidence 99999994 44454443322 22344555555544
No 326
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.26 E-value=0.037 Score=49.66 Aligned_cols=41 Identities=17% Similarity=0.049 Sum_probs=30.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
.-.++.|.|++|+|||+|+.+++.... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 457999999999999999998765322 22346788876443
No 327
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.25 E-value=0.0056 Score=55.68 Aligned_cols=65 Identities=23% Similarity=0.160 Sum_probs=42.7
Q ss_pred HHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHH
Q 042290 28 EAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVI 96 (425)
Q Consensus 28 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 96 (425)
.+|...+... .++..+|+|+|.||+|||||...+......+++--.++=|+-+.+++--.++.+=
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 3444444332 3577899999999999999999998866544444445555556666544444433
No 328
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.24 E-value=0.012 Score=60.52 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=49.0
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|.++.++.+...+... +.+.++|++|+|||++|+.+++... ...|...+++. ....+...++..+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~-n~~~~~~~~~~~v~ 87 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYP-NPEDPNMPRIVEVP 87 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEe-CCCCCchHHHHHHH
Confidence 56899999888888877543 2567999999999999999998432 22333344333 22334445566666
Q ss_pred HHhc
Q 042290 98 QADA 101 (425)
Q Consensus 98 ~~l~ 101 (425)
..++
T Consensus 88 ~~~g 91 (608)
T TIGR00764 88 AGEG 91 (608)
T ss_pred Hhhc
Confidence 5554
No 329
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.23 E-value=0.013 Score=56.61 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=39.4
Q ss_pred CCccccchhhHHHHHHHhhCCCC--------CCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDL--------NSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~--------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+..++|.++.++.+...+..... .....++.|.++|++|+|||++|+.++...
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999988777754200 011234678999999999999999998843
No 330
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.047 Score=52.17 Aligned_cols=88 Identities=14% Similarity=0.020 Sum_probs=52.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF-DAVGITKVILQADA-GSVDVNDLNLLQLQLENQL 120 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~-~~~~~~~~~~~~~~l~~~l 120 (425)
.+.++++|+|+.|+||||++..++.....+ -..+.+++..... ...+-++...+.++ .-....+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 356899999999999999999988743222 2345666654322 22334455555544 2122345666665555432
Q ss_pred C-CceEEEEEeCC
Q 042290 121 K-NKKFLLVLDDM 132 (425)
Q Consensus 121 ~-~k~~LLVlDdv 132 (425)
. +..=++++|-.
T Consensus 282 ~~~~~D~VLIDTA 294 (407)
T PRK12726 282 YVNCVDHILIDTV 294 (407)
T ss_pred hcCCCCEEEEECC
Confidence 1 33457888987
No 331
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.21 E-value=0.0068 Score=50.71 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=30.7
Q ss_pred hhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 24 EKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 24 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.+.+++|.++|.. +++++.|..|+|||||+..+..+.
T Consensus 23 ~~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 3557888888832 689999999999999999998853
No 332
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.21 E-value=0.035 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+.+.+|.++|.+|+||||++..++...
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999887643
No 333
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.20 E-value=0.008 Score=56.24 Aligned_cols=95 Identities=19% Similarity=0.075 Sum_probs=56.1
Q ss_pred HHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC----
Q 042290 28 EAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS---- 103 (425)
Q Consensus 28 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~---- 103 (425)
..|...|... +-+.-+++-|+|+.|+||||||..++.. .+..-..++|+.....++... +..++-+
T Consensus 39 ~~LD~aLg~G---G~p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rl 108 (322)
T PF00154_consen 39 PALDYALGIG---GLPRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRL 108 (322)
T ss_dssp HHHHHHTSSS---SEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGE
T ss_pred cccchhhccC---ccccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccce
Confidence 4455555311 1234579999999999999999998873 344456788999877766533 3333311
Q ss_pred --CCCCCHHHHHHHHHHHcCC-ceEEEEEeCC
Q 042290 104 --VDVNDLNLLQLQLENQLKN-KKFLLVLDDM 132 (425)
Q Consensus 104 --~~~~~~~~~~~~l~~~l~~-k~~LLVlDdv 132 (425)
...+..++........++. .--++|+|.|
T Consensus 109 lv~~P~~~E~al~~~e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 109 LVVQPDTGEQALWIAEQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTTSESEEEEE-C
T ss_pred EEecCCcHHHHHHHHHHHhhcccccEEEEecC
Confidence 1234455565656555543 3458899998
No 334
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.034 Score=52.42 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=33.8
Q ss_pred CccccchhhHHHHHHHhhCCCC------CCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 18 KEVYGREKDKEAIVGLLLGDDL------NSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.++.|-++..+-|.+...-+-. +....-+-|.++|++|.|||-||++|+..
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 3456666655555554422210 11245577999999999999999999984
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.18 E-value=0.0038 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+.++|+|.|++|+||||+|+.++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999863
No 336
>PHA00729 NTP-binding motif containing protein
Probab=96.16 E-value=0.0043 Score=54.88 Aligned_cols=25 Identities=48% Similarity=0.522 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....|.|+|.+|+|||+||..+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999884
No 337
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.15 E-value=0.035 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-.+++|.|+.|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 338
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.0036 Score=54.09 Aligned_cols=26 Identities=46% Similarity=0.525 Sum_probs=23.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
..+|+|-||-|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998543
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.017 Score=48.50 Aligned_cols=118 Identities=16% Similarity=0.127 Sum_probs=62.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
.+++|.|..|.|||||++.+..... .....+++........ ........+.-..+....+...-.+...+...+-
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKL--PLEELRRRIGYVPQLSGGQRQRVALARALLLNPD 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccC--CHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999988432 3345555432211110 0011111122000112223333335555666678
Q ss_pred EEEEeCCCC-CChHHHhccccccCCC-CCCcEEEEecCChhhhhc
Q 042290 126 LLVLDDMWS-ENYDVRANLCKPFKAG-LPGSKIIVTTRNEGVSSM 168 (425)
Q Consensus 126 LLVlDdv~~-~~~~~~~~l~~~l~~~-~~~~~ilvTtR~~~v~~~ 168 (425)
++++|+... .+......+...+... ..+..+|++|........
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999742 3333444444433321 124678888877654443
No 340
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.13 E-value=0.044 Score=49.80 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
-.+++|.|+.|+|||||++.++...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998753
No 341
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.12 E-value=0.0062 Score=48.39 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHhhCCCC-CCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 18 KEVYGREKDKEAIVGLLLGDDL-NSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~-~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++|..-..+.+.+.+..--. +...++-|+..+|.+|+|||-+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4578877665555555433211 13467889999999999999988888775
No 342
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.12 E-value=0.0073 Score=62.06 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=54.6
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
.+++|.++.++.|...+... +.+.++|++|+||||+|+.+++... ...++..+|..- ...+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHH
Confidence 56899999999888877432 3689999999999999999988532 334567778654 3445666777777
Q ss_pred HHhc
Q 042290 98 QADA 101 (425)
Q Consensus 98 ~~l~ 101 (425)
..++
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 6555
No 343
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.11 E-value=0.043 Score=50.10 Aligned_cols=87 Identities=22% Similarity=0.219 Sum_probs=52.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccc--ccCCCeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHHH-
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRV--KKYFSFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLLQ- 113 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~~- 113 (425)
.-++|.|.+|+|||+|+..++++... +++-+.++++-+++... ..+++..+...-. ...+........
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 45799999999999999998875331 12346778888877654 4555555544321 111111111111
Q ss_pred ----HHHHHHc---CCceEEEEEeCC
Q 042290 114 ----LQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 114 ----~~l~~~l---~~k~~LLVlDdv 132 (425)
-.+.+++ .++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1123333 378999999999
No 344
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.10 E-value=0.014 Score=56.33 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=39.1
Q ss_pred CCccccchhhHHHHHHHhhCC--------CCCCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 17 EKEVYGREKDKEAIVGLLLGD--------DLNSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..++|.++.++.+..++... ........+.+.++|++|+|||+||+.++..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 466999999999998888541 0000112467899999999999999999884
No 345
>PRK15453 phosphoribulokinase; Provisional
Probab=96.09 E-value=0.028 Score=51.41 Aligned_cols=77 Identities=17% Similarity=0.114 Sum_probs=43.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC--CHHHHHHHHH--HHhc---CC--CCCCCHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF--DAVGITKVIL--QADA---GS--VDVNDLNLLQL 114 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il--~~l~---~~--~~~~~~~~~~~ 114 (425)
+..+|+|.|.+|+||||+|+.+.+... ..-.....++...-. +....-..+. ..-+ .. ....+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~--~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR--RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh--hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 567999999999999999999886322 111123344433222 2222222211 1111 22 46677788888
Q ss_pred HHHHHcCC
Q 042290 115 QLENQLKN 122 (425)
Q Consensus 115 ~l~~~l~~ 122 (425)
.++.+..+
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 88776553
No 346
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.08 E-value=0.032 Score=51.44 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=47.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC------C--CCCCCHHHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAG------S--VDVNDLNLLQL 114 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~------~--~~~~~~~~~~~ 114 (425)
.+..++.|.|.+|+|||||+..+.+.. ..... .+.+ ..+..+..+ ...+...+. . .--.+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l--~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL--KDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh--ccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 578899999999999999999998843 22232 2222 222222221 122333321 1 11223444555
Q ss_pred HHHHHcCCceEEEEEeCC
Q 042290 115 QLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 115 ~l~~~l~~k~~LLVlDdv 132 (425)
.+........-+||++++
T Consensus 176 Al~~L~~~~~d~liIEnv 193 (290)
T PRK10463 176 AAPRLPLDDNGILFIENV 193 (290)
T ss_pred HHHHHhhcCCcEEEEECC
Confidence 555554444568899998
No 347
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.08 E-value=0.0042 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...|.|+|++|+||||+|+.+++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999884
No 348
>PRK03839 putative kinase; Provisional
Probab=96.08 E-value=0.0041 Score=53.64 Aligned_cols=23 Identities=43% Similarity=0.762 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999843
No 349
>PRK04040 adenylate kinase; Provisional
Probab=96.08 E-value=0.0046 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+|+|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999884
No 350
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.07 E-value=0.022 Score=50.32 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=49.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhc--------CCCCCCCHH------
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF-DAVGITKVILQADA--------GSVDVNDLN------ 110 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~--------~~~~~~~~~------ 110 (425)
.-+.|.|.+|+|||+|+..+++... -+..+++.+++.. ...++...+...-. ...+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4688999999999999999988532 3445788887654 34455555543211 111111111
Q ss_pred ---HHHHHHHHHcCCceEEEEEeCC
Q 042290 111 ---LLQLQLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 111 ---~~~~~l~~~l~~k~~LLVlDdv 132 (425)
...+.++. .++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 11222333 689999999999
No 351
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.06 E-value=0.017 Score=53.02 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=44.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCceE
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQLKNKKF 125 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~~ 125 (425)
+++.|.|+.|.||||++..+.... ...-..++.+.-........ + .+.. ..........+.++..++..+=
T Consensus 81 GlilisG~tGSGKTT~l~all~~i--~~~~~~iitiEdp~E~~~~~----~-~q~~--v~~~~~~~~~~~l~~~lR~~PD 151 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSEL--NTPEKNIITVEDPVEYQIPG----I-NQVQ--VNEKAGLTFARGLRAILRQDPD 151 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhh--CCCCCeEEEECCCceecCCC----c-eEEE--eCCcCCcCHHHHHHHHhccCCC
Confidence 589999999999999999887642 21111233332111111100 0 1111 0111112355667777887888
Q ss_pred EEEEeCCCC
Q 042290 126 LLVLDDMWS 134 (425)
Q Consensus 126 LLVlDdv~~ 134 (425)
.|+++++.+
T Consensus 152 ~i~vgEiR~ 160 (264)
T cd01129 152 IIMVGEIRD 160 (264)
T ss_pred EEEeccCCC
Confidence 999999943
No 352
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.06 E-value=0.0048 Score=55.25 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-|.|.|++|+||||+|+.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999884
No 353
>COG4240 Predicted kinase [General function prediction only]
Probab=96.04 E-value=0.019 Score=50.13 Aligned_cols=82 Identities=17% Similarity=0.092 Sum_probs=56.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc------CCCCCCCHHHHHHHH
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA------GSVDVNDLNLLQLQL 116 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~------~~~~~~~~~~~~~~l 116 (425)
+++-+++|.|+-|+||||++..+++....+.- ..+...++.+-.-...-...++++.. +.....|..-....|
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 46789999999999999999999886543332 36667776655544444455555533 345667777777777
Q ss_pred HHHcCCceE
Q 042290 117 ENQLKNKKF 125 (425)
Q Consensus 117 ~~~l~~k~~ 125 (425)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 777776643
No 354
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.03 E-value=0.0059 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999998863
No 355
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.2 Score=44.75 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHhhCCCCC-------CCCCcEEEEEEecCCchHHHHHHHHhc
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+++=|-++++++|.+.+.-+... +-..++-+..+|++|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 34678899999998887544321 234566789999999999999999877
No 356
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.01 E-value=0.011 Score=51.54 Aligned_cols=42 Identities=29% Similarity=0.379 Sum_probs=32.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++|.+..+..|.-..... .-+.+.|++|+|||+||+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 56889998888877666432 3689999999999999999854
No 357
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.00 E-value=0.0088 Score=54.92 Aligned_cols=42 Identities=26% Similarity=0.150 Sum_probs=34.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
+.-+++.|+|.+|+|||+++.++.. ........++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4568999999999999999999988 44455778999987764
No 358
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.99 E-value=0.059 Score=60.88 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.++=|.++|++|+|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45668999999999999999999854
No 359
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.99 E-value=0.027 Score=57.48 Aligned_cols=25 Identities=32% Similarity=0.297 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+-..++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999764
No 360
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.99 E-value=0.039 Score=53.77 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=49.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHHH--
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLLQ-- 113 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~~-- 113 (425)
-..++|.|..|+|||||++.+++.. ..+.++..-+++... ..++...++..-+ ...+........
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998732 224555566666544 3445555544321 111111111111
Q ss_pred ---HHHHHHc--CCceEEEEEeCC
Q 042290 114 ---LQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 114 ---~~l~~~l--~~k~~LLVlDdv 132 (425)
-.+.+++ .++.+||++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122333 588999999999
No 361
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.0046 Score=51.64 Aligned_cols=20 Identities=50% Similarity=0.776 Sum_probs=18.6
Q ss_pred EEEEEecCCchHHHHHHHHh
Q 042290 47 VIPITGMGGLGKTTLAQLVF 66 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~ 66 (425)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 362
>PLN02348 phosphoribulokinase
Probab=95.98 E-value=0.031 Score=53.59 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+.+-+|+|.|.+|+||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998743
No 363
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.98 E-value=0.032 Score=54.83 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=52.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHH---
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLL--- 112 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~--- 112 (425)
-.-++|.|.+|+|||+|+..++...... +-..++++-+++... ..+++..++..-. ...+.......
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999887643322 124566777766543 4555665554322 11122122211
Q ss_pred --HHHHHHHc---CCceEEEEEeCC
Q 042290 113 --QLQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 113 --~~~l~~~l---~~k~~LLVlDdv 132 (425)
.-.+.+++ .++.+||++|++
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 11234444 678999999999
No 364
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.96 E-value=0.015 Score=57.85 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=70.5
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|+...++++...+..... ....+.|.|..|+||+++|+.+..... .. -...+.+++..-. . ..+...+
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~----~~~~vli~Ge~GtGK~~lA~~ih~~s~-~~-~~~~v~v~c~~~~-~-~~~~~~l 210 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAP----SDITVLLLGESGTGKEVLARALHQLSD-RK-DKRFVAINCAAIP-E-NLLESEL 210 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhCC-cC-CCCeEEEECCCCC-h-HHHHHHh
Confidence 3589998888888777754321 223467999999999999999876321 11 1122344444332 1 2222111
Q ss_pred HHhcCCCCC--CCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 98 QADAGSVDV--NDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 98 ~~l~~~~~~--~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
++..... .........+. ....-.|+||++..........+...+..+. ...+||+||...
T Consensus 211 --fg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 211 --FGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred --cCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 1110000 00000000000 1223468999997776666666666554321 245889888754
No 365
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.96 E-value=0.0051 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999874
No 366
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.93 E-value=0.0046 Score=52.53 Aligned_cols=22 Identities=50% Similarity=0.674 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHhcCc
Q 042290 48 IPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~ 69 (425)
|.|+|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998754
No 367
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.93 E-value=0.018 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|+|.|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 368
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.93 E-value=0.014 Score=50.82 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=28.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCC--------CeEEEEEeCCC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYF--------SFRAWAYVSED 86 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~ 86 (425)
.++.|.|++|+|||+++.+++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999999987755433222 35778776554
No 369
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.91 E-value=0.0048 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999999884
No 370
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.91 E-value=0.0064 Score=54.39 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=25.8
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcCccccc
Q 042290 42 GRGFSVIPITGMGGLGKTTLAQLVFNDVRVKK 73 (425)
Q Consensus 42 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~ 73 (425)
.+++.+|.++||+|.||||..+.+..+...++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhcc
Confidence 35677899999999999999999988654333
No 371
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.91 E-value=0.0055 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|.|++|+|||||++.++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998774
No 372
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.91 E-value=0.0075 Score=63.67 Aligned_cols=25 Identities=28% Similarity=0.101 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..++.|+|+.|.|||||.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3478999999999999999988653
No 373
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.90 E-value=0.045 Score=53.58 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=46.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHh-----c--CCCCCCCHHHHH----
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQAD-----A--GSVDVNDLNLLQ---- 113 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l-----~--~~~~~~~~~~~~---- 113 (425)
-..++|.|++|+|||||++.++.... ....+++..--...+...+....+... . ...+........
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35789999999999999998876322 223444443323334444444333322 1 121222211111
Q ss_pred -HHHHHHc--CCceEEEEEeCC
Q 042290 114 -LQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 114 -~~l~~~l--~~k~~LLVlDdv 132 (425)
-.+.+++ .++.+||++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 1122222 488999999999
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.89 E-value=0.05 Score=51.29 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
.+..+++++|++|+||||++..++....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3568999999999999999999987543
No 375
>PHA02774 E1; Provisional
Probab=95.89 E-value=0.035 Score=55.65 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=34.2
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE 85 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 85 (425)
+..|..+|... ++...+.|+|++|+|||.+|..+++-.. -....|++...
T Consensus 421 l~~lk~~l~~~-----PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~s 470 (613)
T PHA02774 421 LTALKDFLKGI-----PKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSKS 470 (613)
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECcc
Confidence 45566665322 3456899999999999999999988431 23456676543
No 376
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.88 E-value=0.029 Score=49.20 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=59.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEE-------------------eCCCCCH--HHHHHHHHHHhcCC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAY-------------------VSEDFDA--VGITKVILQADAGS 103 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~-------------------~~~~~~~--~~~~~~il~~l~~~ 103 (425)
-.+++|.|+.|.|||||.+.++..... ..-.+.+.++ +.+.... .....+++... .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~--~ 102 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKY-EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV--N 102 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcC-CCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc--c
Confidence 358999999999999999998875210 0011112211 0111100 00011111111 0
Q ss_pred CCCCCHHHHHHHHHHHcCCceEEEEEeCCC-CCChHHHhccccccCCC-CCCcEEEEecCChhhhh
Q 042290 104 VDVNDLNLLQLQLENQLKNKKFLLVLDDMW-SENYDVRANLCKPFKAG-LPGSKIIVTTRNEGVSS 167 (425)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~-~~~~~~~~~l~~~l~~~-~~~~~ilvTtR~~~v~~ 167 (425)
......+...-.+.+.+-.++-++++|+-- ..+......+...+... ..+..||++|.+.....
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 011122223334556666777899999973 23334444444443322 23667888888765544
No 377
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.036 Score=49.57 Aligned_cols=50 Identities=24% Similarity=0.115 Sum_probs=34.6
Q ss_pred ccccchhhHHHHHHHhhCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 19 EVYGREKDKEAIVGLLLGDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++=|=.+++++|.+...-+-- -+-..++-|.++|++|.|||-+|+++++.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 345566677777665533211 02245567889999999999999999993
No 378
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.88 E-value=0.026 Score=55.08 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
..++|.|++|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5799999999999999999865
No 379
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.0048 Score=50.85 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=30.9
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
+|+|.|++|+||||+|+.++++.... .+ +.-.+++++++..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~g 43 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERG 43 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcC
Confidence 68999999999999999999854321 12 22356777877766
No 380
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.84 E-value=0.013 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=16.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..|+|++|+|||+++..+...
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 7899999999999877776664
No 381
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.84 E-value=0.0093 Score=50.65 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
...+++.|+|..|+|||||+..+.....
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3567999999999999999999987543
No 382
>PRK00625 shikimate kinase; Provisional
Probab=95.84 E-value=0.0056 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|.|+|++|+||||+++.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 383
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.84 E-value=0.038 Score=54.43 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=53.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHH---
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLL--- 112 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~--- 112 (425)
-.-++|.|.+|+|||+|+..+++.... .+-+.++++-+++... ..++...+...-. ...+.......
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 346899999999999999988885432 2456777777766543 4455555554321 11122111111
Q ss_pred --HHHHHHHc---CCceEEEEEeCC
Q 042290 113 --QLQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 113 --~~~l~~~l---~~k~~LLVlDdv 132 (425)
.-.+.+++ .++.+||++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 11233443 378999999999
No 384
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.83 E-value=0.0076 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...+|.|+|.+|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998854
No 385
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.83 E-value=0.0073 Score=52.21 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=28.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEe
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYV 83 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~ 83 (425)
.+++.|+|+.|+|||||+..++. .....|...+..+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 36899999999999999999988 44556655555443
No 386
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.034 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-.+++|.|+.|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999986
No 387
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.82 E-value=0.061 Score=53.17 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=51.4
Q ss_pred cEEEEEEecCCchHHHHH-HHHhcCccc-----ccCCCeEEEEEeCCCCCHHHHHHHHHHHhc-C--------CCCCCCH
Q 042290 45 FSVIPITGMGGLGKTTLA-QLVFNDVRV-----KKYFSFRAWAYVSEDFDAVGITKVILQADA-G--------SVDVNDL 109 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa-~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-~--------~~~~~~~ 109 (425)
-.-+.|.|..|+|||+|| ..+.+...+ .+.-..++++.+++..+...-+...+.+.+ . ..+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 346789999999999997 556665322 123456788888877654433444444433 1 1111111
Q ss_pred H---------HHHHHHHHHcCCceEEEEEeCC
Q 042290 110 N---------LLQLQLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 110 ~---------~~~~~l~~~l~~k~~LLVlDdv 132 (425)
. ...+.++. .++.+|+|+||+
T Consensus 269 ~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDL 298 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMN--RGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCEEEEEcCc
Confidence 1 12223332 578999999999
No 388
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.81 E-value=0.042 Score=53.61 Aligned_cols=85 Identities=20% Similarity=0.220 Sum_probs=47.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhc--------CCCCCCCHHHHH-
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE-DFDAVGITKVILQADA--------GSVDVNDLNLLQ- 113 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~--------~~~~~~~~~~~~- 113 (425)
+-..++|.|..|+|||||++.++.... . +......+.. .....++....+..-+ ...+........
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 335789999999999999998887432 1 2223333333 3334445554444322 111222222111
Q ss_pred ----HHHHHHc--CCceEEEEEeCC
Q 042290 114 ----LQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 114 ----~~l~~~l--~~k~~LLVlDdv 132 (425)
-.+.+++ .++.+||++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1123333 578999999999
No 389
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.79 E-value=0.021 Score=54.04 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEecCCchHHHHHHHHhcCc
Q 042290 48 IPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+++.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998754
No 390
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.78 E-value=0.027 Score=47.83 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=44.4
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc-CC--C-CCCCHHHHHHHHHHHcCCc
Q 042290 48 IPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA-GS--V-DVNDLNLLQLQLENQLKNK 123 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-~~--~-~~~~~~~~~~~l~~~l~~k 123 (425)
+.|.|.+|+|||++|.+++.. .....+++.....++.+ +...|...-. .+ . ..+....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 689999999999999999863 22356777766666543 3333333221 11 1 112223344444222 2 2
Q ss_pred eEEEEEeCC
Q 042290 124 KFLLVLDDM 132 (425)
Q Consensus 124 ~~LLVlDdv 132 (425)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 391
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.78 E-value=0.012 Score=51.67 Aligned_cols=43 Identities=33% Similarity=0.380 Sum_probs=29.4
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHH
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAV 90 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 90 (425)
.|+|+|-||+||||+|..++.....++.| .+.-|+..+++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCChH
Confidence 58999999999999999865533222223 35666666666543
No 392
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.78 E-value=0.052 Score=53.04 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=49.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhc--------CCCCCCCHHHHH-
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF-DAVGITKVILQADA--------GSVDVNDLNLLQ- 113 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~--------~~~~~~~~~~~~- 113 (425)
.-..++|.|..|+|||||++.+++.. +.+..++..+++.. ...+++.+....-. ...+....+...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34578999999999999999988743 23445555555533 34455555433111 111222222211
Q ss_pred ----HHHHHHc--CCceEEEEEeCC
Q 042290 114 ----LQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 114 ----~~l~~~l--~~k~~LLVlDdv 132 (425)
-.+.+++ +++++||++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 1122333 488999999999
No 393
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.78 E-value=0.032 Score=56.05 Aligned_cols=61 Identities=18% Similarity=0.053 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
+.+|.++|...- ..-.++.|.|++|+|||||+.+++.... .+-..+++++..+. ..++...
T Consensus 249 i~~lD~~lgGG~----~~gs~~li~G~~G~GKt~l~~~f~~~~~--~~ge~~~y~s~eEs--~~~i~~~ 309 (484)
T TIGR02655 249 VVRLDEMCGGGF----FKDSIILATGATGTGKTLLVSKFLENAC--ANKERAILFAYEES--RAQLLRN 309 (484)
T ss_pred hHhHHHHhcCCc----cCCcEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeCC--HHHHHHH
Confidence 456666664422 3567999999999999999999988432 23345777775543 3344443
No 394
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.78 E-value=0.0054 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+|+|.|++|+|||||++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998774
No 395
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.76 E-value=0.0072 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++++|+|++|+|||||++.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999884
No 396
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.76 E-value=0.058 Score=52.78 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=50.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHH--
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLL-- 112 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~-- 112 (425)
+-..++|.|..|+|||||++.+++... .+.+++.-+++... ..++....+..-+ ...+.......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 345789999999999999999987432 23455566665544 3344444444322 11122112211
Q ss_pred ---HHHHHHHc--CCceEEEEEeCC
Q 042290 113 ---QLQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 113 ---~~~l~~~l--~~k~~LLVlDdv 132 (425)
.-.+.+++ .++.+||++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 11122333 588999999999
No 397
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.75 E-value=0.0094 Score=51.61 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999874
No 398
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.73 E-value=0.0058 Score=52.80 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999884
No 399
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.73 E-value=0.0075 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEecCCchHHHHHHHHhcCc
Q 042290 48 IPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~ 69 (425)
|.|.|..|+|||||.+.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.055 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.289 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+++++|+.|+||||++..++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999987763
No 401
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.72 E-value=0.0092 Score=51.61 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=27.0
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC
Q 042290 48 IPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE 85 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 85 (425)
+.|.|++|+|||+|+.+++.... ..-..++|++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC
Confidence 68999999999999999877432 2234577887654
No 402
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.72 E-value=0.0061 Score=50.39 Aligned_cols=22 Identities=41% Similarity=0.680 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+|+|.|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 403
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.71 E-value=0.0084 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+|.|.|.+|+||||+|+.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999884
No 404
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.71 E-value=0.066 Score=50.61 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
++..+|.|.|.+|+|||||+..+.....
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999877443
No 405
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.71 E-value=0.058 Score=57.28 Aligned_cols=24 Identities=29% Similarity=0.167 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
..+++.|+|+.+.||||+.+.+.-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 457899999999999999988753
No 406
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.71 E-value=0.0099 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
...+.+.|+|++|+|||||+..+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3668899999999999999999876
No 407
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.70 E-value=0.032 Score=58.39 Aligned_cols=97 Identities=15% Similarity=-0.000 Sum_probs=60.7
Q ss_pred HHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC---
Q 042290 27 KEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS--- 103 (425)
Q Consensus 27 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~--- 103 (425)
...|..+|... +=..-+++-|.|++|+|||+|+.+++.. ....-..++|+...+.++.. .++.++-.
T Consensus 45 i~~LD~lLg~G---Gip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~ 114 (790)
T PRK09519 45 SIALDVALGIG---GLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDS 114 (790)
T ss_pred cHHHHHhhcCC---CccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhH
Confidence 34565666311 1135688999999999999999887653 22233567898877666632 45555511
Q ss_pred ---CCCCCHHHHHHHHHHHcC-CceEEEEEeCCC
Q 042290 104 ---VDVNDLNLLQLQLENQLK-NKKFLLVLDDMW 133 (425)
Q Consensus 104 ---~~~~~~~~~~~~l~~~l~-~k~~LLVlDdv~ 133 (425)
......+.....+...+. ++.-|+|+|.+-
T Consensus 115 llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 115 LLVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred eEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 123344555555555554 456799999983
No 408
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.69 E-value=0.029 Score=50.87 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=43.4
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC--CHHHHHHHHHHHh----c-CC--CCCCCHHHHHHHHH
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF--DAVGITKVILQAD----A-GS--VDVNDLNLLQLQLE 117 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l----~-~~--~~~~~~~~~~~~l~ 117 (425)
+|+|.|.+|+||||+++.+.+.....+ ..+..++...-. +-...-..+.... . .. +...+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998887432111 123444433222 1122222222211 1 22 56777888888888
Q ss_pred HHcCCce
Q 042290 118 NQLKNKK 124 (425)
Q Consensus 118 ~~l~~k~ 124 (425)
.+..++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776553
No 409
>PF13245 AAA_19: Part of AAA domain
Probab=95.69 E-value=0.009 Score=43.31 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=16.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+++.|.|++|.|||+++.+...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788899999999955554444
No 410
>PRK15115 response regulator GlrR; Provisional
Probab=95.68 E-value=0.026 Score=56.16 Aligned_cols=135 Identities=14% Similarity=0.043 Sum_probs=69.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVIL 97 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 97 (425)
..++|+...+.++.+....... ....|.|.|.+|+|||++|+.+.+... ..-...+.+++..- +...+...+.
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~----~~~~vli~Ge~GtGk~~lA~~ih~~s~--r~~~~f~~i~c~~~-~~~~~~~~lf 206 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQ----SDVSVLINGQSGTGKEILAQAIHNASP--RASKPFIAINCGAL-PEQLLESELF 206 (444)
T ss_pred hcccccCHHHHHHHHHHHhhcc----CCCeEEEEcCCcchHHHHHHHHHHhcC--CCCCCeEEEeCCCC-CHHHHHHHhc
Confidence 3578888777776665543321 224578999999999999998877422 11112233343332 2222111111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 98 QADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
........... .. ..-+ ......-.|+||++..........+...+..+. ...+||.||...
T Consensus 207 g~~~~~~~~~~-~~-~~g~--~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 207 GHARGAFTGAV-SN-REGL--FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred CCCcCCCCCCc-cC-CCCc--EEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 10000000000 00 0000 001123479999998777666667666554321 145888888754
No 411
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.68 E-value=0.041 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-.+++|.|+.|.|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 412
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.67 E-value=0.022 Score=49.00 Aligned_cols=118 Identities=13% Similarity=-0.001 Sum_probs=61.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC---CCCHHHHHHHHH--HHh--cCC--CCCCCHH----
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE---DFDAVGITKVIL--QAD--AGS--VDVNDLN---- 110 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il--~~l--~~~--~~~~~~~---- 110 (425)
....|.|+|..|-||||.|...+-. ...+=..+..+..-. .......+..+- ... +.. ....+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 3468999999999999999887663 222222233332211 223333333321 000 010 0111111
Q ss_pred ---HHHHHHHHHcCC-ceEEEEEeCCCC---CChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 111 ---LLQLQLENQLKN-KKFLLVLDDMWS---ENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 111 ---~~~~~l~~~l~~-k~~LLVlDdv~~---~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
...+..++.+.. +-=|+|||.+-. ...-..+++...+.....+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 112223344444 445999999821 11223445555666666778999999985
No 413
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.65 E-value=0.0098 Score=52.14 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
++..+|+|+|.+|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999884
No 414
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.65 E-value=0.018 Score=54.14 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=34.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
.+++++.|.|||||||+|.+.+-... .....+.-|+..+..++..++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH--HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998665322 22244777777776666555443
No 415
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.65 E-value=0.064 Score=55.12 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=62.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccc-ccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCCHHHHHHH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRV-KKYFSFRAWAYVSEDFDAVGITKVILQADAGSVD--------VNDLNLLQLQ 115 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~~~~~ 115 (425)
.++..|.|.+|+||||++..+...... ...-...+.+......-...+...+...+..-.. ......+...
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 358999999999999999888764311 1111234555443333233333333222210000 0111222222
Q ss_pred HHHHcC--------Cce---EEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhhh
Q 042290 116 LENQLK--------NKK---FLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVSS 167 (425)
Q Consensus 116 l~~~l~--------~k~---~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~ 167 (425)
+..... +.+ -++|+|.+.-.+......+...++ +++|+|+.--..+++.
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~QL~s 306 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQLAS 306 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhhcCC
Confidence 211111 111 289999986555566666666655 5688888776654443
No 416
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.64 E-value=0.0086 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
...+|+|+|++|+|||||++.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999884
No 417
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.63 E-value=0.007 Score=52.11 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.5
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+|+|.|.+|+||||||..+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998743
No 418
>PRK06217 hypothetical protein; Validated
Probab=95.63 E-value=0.0074 Score=52.17 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.|.|.|.+|+||||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999854
No 419
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.62 E-value=0.079 Score=52.60 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+.++++++|+.|+||||++..++...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 34799999999999999999998743
No 420
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.01 Score=49.15 Aligned_cols=24 Identities=38% Similarity=0.672 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++.|+|.+|+||||+.+.+.+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999988774
No 421
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.61 E-value=0.073 Score=48.14 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=36.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQA 99 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 99 (425)
.-.++.|.|.+|+|||+++.+++.+..... -..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHHH
Confidence 446899999999999999999877533221 23567777554 445555555443
No 422
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.60 E-value=0.014 Score=48.04 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=27.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE 85 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 85 (425)
++|.|+|..|+|||||++.+++... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4799999999999999999999643 34455555666554
No 423
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.58 E-value=0.044 Score=53.73 Aligned_cols=87 Identities=15% Similarity=0.249 Sum_probs=53.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHHH--
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLLQ-- 113 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~~-- 113 (425)
-.-++|.|.+|+|||+|+..+++... +.+-+.++++-+++... ..+++..+...-. ...+........
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 34689999999999999999887533 22346778887776654 4455555544321 111222222111
Q ss_pred ---HHHHHHc---CCceEEEEEeCC
Q 042290 114 ---LQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 114 ---~~l~~~l---~~k~~LLVlDdv 132 (425)
-.+.+++ +++++||++||+
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCh
Confidence 1233343 468999999999
No 424
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.56 E-value=0.013 Score=54.93 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=30.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGI 92 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 92 (425)
+++.+.|-|||||||+|...+-....+ =..+.-++.....++..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~--G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR--GKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TS-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC--CCCeeEeecCCCccHHHH
Confidence 589999999999999998876643322 234666666655444443
No 425
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.54 E-value=0.17 Score=42.48 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHhc-C------CCCCCCHHHHHHHHHHHcCCceEEEEEeCC----CCCChHHHhccccccCCCCCCcEE
Q 042290 88 DAVGITKVILQADA-G------SVDVNDLNLLQLQLENQLKNKKFLLVLDDM----WSENYDVRANLCKPFKAGLPGSKI 156 (425)
Q Consensus 88 ~~~~~~~~il~~l~-~------~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv----~~~~~~~~~~l~~~l~~~~~~~~i 156 (425)
+.....+..+.+++ . +.+....++..-.|.+.+...+-+|+-|.- +...-+...+++-.+. ...|..+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hhcCceE
Confidence 34445666666666 1 123344566667788888888889998864 2233344455544433 3468888
Q ss_pred EEecCChhhhhccCC
Q 042290 157 IVTTRNEGVSSMVTT 171 (425)
Q Consensus 157 lvTtR~~~v~~~~~~ 171 (425)
++.|.+..++..|..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 888888888887753
No 426
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.54 E-value=0.041 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-.+++|.|+.|.|||||.+.++..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 427
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.52 E-value=0.073 Score=48.60 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=46.7
Q ss_pred cEEEEEEecCCchHHHHH-HHHhcCcccccCCCeE-EEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHH---
Q 042290 45 FSVIPITGMGGLGKTTLA-QLVFNDVRVKKYFSFR-AWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLN--- 110 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa-~~~~~~~~~~~~f~~~-~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~--- 110 (425)
-.-+.|.|.+|+|||+|| ..+.+. ..-+.. +++-+++... ..++...+...-. ...+.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 346789999999999996 555552 122333 5666666543 4455555543221 111111111
Q ss_pred ------HHHHHHHHHcCCceEEEEEeCC
Q 042290 111 ------LLQLQLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 111 ------~~~~~l~~~l~~k~~LLVlDdv 132 (425)
...+.++. .++.+||++||+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 11223333 478999999999
No 428
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.012 Score=49.25 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.+..+|.++|.+|.||||+|.++.+..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998843
No 429
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.50 E-value=0.059 Score=56.30 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-..|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999866
No 430
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.49 E-value=0.022 Score=53.09 Aligned_cols=55 Identities=27% Similarity=0.311 Sum_probs=39.5
Q ss_pred CCccccchhhHH---HHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCC
Q 042290 17 EKEVYGREKDKE---AIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYF 75 (425)
Q Consensus 17 ~~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f 75 (425)
...|||..+..+ -+.++..+.. -.-+.|.|+|++|.|||+||..+.+..-..-+|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk----~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGK----MAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCc----ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 456899876554 3566665543 245789999999999999999999865433344
No 431
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.48 E-value=0.051 Score=49.80 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=61.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCHHHH--HHHH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS------VDVNDLNLL--QLQL 116 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~------~~~~~~~~~--~~~l 116 (425)
..++.|-|.+|+|||++|.+++.+...... ..++|++.- .+..++...++.....- ....+.++. ....
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~SlE--m~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~ 95 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSLE--MSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAA 95 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEESS--S-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcCC--CCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHH
Confidence 458999999999999999999886543322 567777644 45666777776665411 111112221 1122
Q ss_pred HHHcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecC
Q 042290 117 ENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTR 161 (425)
Q Consensus 117 ~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR 161 (425)
...+.+.+ +++++..+...+........+.....+..+||.-.
T Consensus 96 ~~~l~~~~--l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDy 138 (259)
T PF03796_consen 96 AEKLSDLP--LYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDY 138 (259)
T ss_dssp HHHHHTSE--EEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HHHHhhCc--EEEECCCCCCHHHHHHHHHHHHhhccCCCEEEech
Confidence 33445555 44455544445555544443333224556665544
No 432
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.48 E-value=0.0093 Score=48.85 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.5
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 042290 48 IPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~ 68 (425)
++|+|++|+|||||++.+.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999884
No 433
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.13 Score=45.33 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
--+-+|-||.|.||||||..+.-++
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999997765
No 434
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.47 E-value=0.014 Score=45.15 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.9
Q ss_pred cEEEEEEecCCchHHHHHHHHh
Q 042290 45 FSVIPITGMGGLGKTTLAQLVF 66 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~ 66 (425)
-..++|.|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 435
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.46 E-value=0.13 Score=48.50 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=47.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhc--------CCCCCCCHHH----
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE-DFDAVGITKVILQADA--------GSVDVNDLNL---- 111 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~--------~~~~~~~~~~---- 111 (425)
-..++|.|..|+|||||.+.++.... -+..+...+.. ..+..++....+..-+ ...+......
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999887432 23334444443 3345555555544322 1112211111
Q ss_pred -----HHHHHHHHcCCceEEEEEeCC
Q 042290 112 -----LQLQLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 112 -----~~~~l~~~l~~k~~LLVlDdv 132 (425)
..+.++. .++.+||++||+
T Consensus 145 ~~a~~~AEyfr~--~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRD--QGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeccc
Confidence 1222332 588999999998
No 436
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.44 E-value=0.085 Score=55.61 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=56.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-------HH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQL-------EN 118 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l-------~~ 118 (425)
+++.|.|.+|+||||+++.+.......+. ...+++......... .+.+..+. .......+.... ..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApTg~AA~----~L~e~~g~--~a~Tih~lL~~~~~~~~~~~~ 411 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPTGRAAK----RLGEVTGL--TASTIHRLLGYGPDTFRHNHL 411 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCchHHHH----HHHHhcCC--ccccHHHHhhccCCccchhhh
Confidence 48999999999999999988774332211 134555443322121 22221110 001111110000 00
Q ss_pred HcCCceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCCh
Q 042290 119 QLKNKKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNE 163 (425)
Q Consensus 119 ~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~ 163 (425)
.-..+.-+||+|.+.-.+......+...++ .++++|+.--..
T Consensus 412 ~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvGD~~ 453 (720)
T TIGR01448 412 EDPIDCDLLIVDESSMMDTWLALSLLAALP---DHARLLLVGDTD 453 (720)
T ss_pred hccccCCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEECccc
Confidence 001234599999996666666666666544 577888766443
No 437
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.43 E-value=0.01 Score=50.20 Aligned_cols=20 Identities=45% Similarity=0.451 Sum_probs=17.0
Q ss_pred EEEEecCCchHHHHHHHHhc
Q 042290 48 IPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~ 67 (425)
|+|+|.+|+|||||+..+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 438
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.43 E-value=0.0083 Score=50.73 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 042290 48 IPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~ 68 (425)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999884
No 439
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.42 E-value=0.043 Score=52.79 Aligned_cols=41 Identities=27% Similarity=0.210 Sum_probs=30.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED 86 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 86 (425)
.++.|.|.||+|||.||..++.+...........+++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 48999999999999999999996522344555667766544
No 440
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.42 E-value=0.012 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.+++|+|++|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999774
No 441
>PRK13947 shikimate kinase; Provisional
Probab=95.42 E-value=0.0098 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|.|+|++|+||||+|+.+++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999884
No 442
>PLN02200 adenylate kinase family protein
Probab=95.42 E-value=0.012 Score=52.92 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..+.+|+|.|++|+||||+|+.+++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999873
No 443
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.41 E-value=0.09 Score=51.42 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=50.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHH---
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNL--- 111 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~--- 111 (425)
+-..++|.|..|+|||||.+.+++... -+.+++.-+++... ..++....+..-+ ...+......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 345789999999999999999998432 24567777766543 4444444333221 1111111111
Q ss_pred ------HHHHHHHHcCCceEEEEEeCC
Q 042290 112 ------LQLQLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 112 ------~~~~l~~~l~~k~~LLVlDdv 132 (425)
..+.++. .++++||++||+
T Consensus 237 ~~~a~tiAEyfrd--~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRD--QGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHH--cCCCEEEeccch
Confidence 1222332 588999999999
No 444
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.40 E-value=0.0094 Score=49.63 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+|.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998843
No 445
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.39 E-value=0.017 Score=56.32 Aligned_cols=51 Identities=27% Similarity=0.210 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHHHhhC----CCCC------CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 18 KEVYGREKDKEAIVGLLLG----DDLN------SGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~----~~~~------~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..++|.+..++.|...+.. ...+ .....+.+.++|++|+|||+||+.++..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~ 131 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARI 131 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999988888655521 1000 0012356899999999999999999873
No 446
>PRK14530 adenylate kinase; Provisional
Probab=95.39 E-value=0.01 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 042290 47 VIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.|+|.|++|+||||+|+.+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 447
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.38 E-value=0.15 Score=46.56 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=72.7
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHH
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKV 95 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 95 (425)
....|+|-..- +++..++.... ...+.+.++|.+|+|||+-++++++.. +..+.+..++.++...+...
T Consensus 70 ~~~~~l~tkt~-r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~ 138 (297)
T COG2842 70 LAPDFLETKTV-RRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILI 138 (297)
T ss_pred ccccccccchh-HhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHH
Confidence 34557765543 22333332222 233488999999999999999999832 22333345555555555555
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccC
Q 042290 96 ILQADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFK 148 (425)
Q Consensus 96 il~~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~ 148 (425)
+...... ............+...+.+..-++++|+........++.+.....
T Consensus 139 i~~~~~~-~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 139 ICAAAFG-ATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred HHHHHhc-ccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 4444432 223334445555566667888899999997766667777665443
No 448
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.38 E-value=0.039 Score=47.00 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=43.5
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc-CCC---CCCCHHHHHHHHHHHcCC
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA-GSV---DVNDLNLLQLQLENQLKN 122 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-~~~---~~~~~~~~~~~l~~~l~~ 122 (425)
.+.|.|.+|+|||++|..++.... . ..+++...... ..+....|..... .+. ..+....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~--~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG--L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC--C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 689999999999999999987421 1 23445444333 3344445433322 111 111222344444443333
Q ss_pred ceEEEEEeCC
Q 042290 123 KKFLLVLDDM 132 (425)
Q Consensus 123 k~~LLVlDdv 132 (425)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337889987
No 449
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.38 E-value=0.025 Score=45.10 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...+|.+.|.=|+||||+++.+++..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 34799999999999999999998854
No 450
>PRK08149 ATP synthase SpaL; Validated
Probab=95.37 E-value=0.1 Score=51.04 Aligned_cols=85 Identities=14% Similarity=0.231 Sum_probs=48.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhc--------CCCCCCCHHHH--
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED-FDAVGITKVILQADA--------GSVDVNDLNLL-- 112 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~--------~~~~~~~~~~~-- 112 (425)
+-..++|.|.+|+|||||+..++.... -+..+...+... .+..++....+.... ...+.......
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 335789999999999999999987432 233333334333 345555555554322 11222221111
Q ss_pred ---HHHHHHHc--CCceEEEEEeCC
Q 042290 113 ---QLQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 113 ---~~~l~~~l--~~k~~LLVlDdv 132 (425)
...+.+++ .++++||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 11122222 588999999999
No 451
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.37 E-value=0.074 Score=52.18 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=47.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc--------CCCCCCCHHHH---
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA--------GSVDVNDLNLL--- 112 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~--------~~~~~~~~~~~--- 112 (425)
+-..++|.|..|+|||||++.++..... -..+++..-.......++...+...-. ...+.......
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 3468899999999999999999874321 123333332333344555555544322 11111112211
Q ss_pred --HHHHHHHc--CCceEEEEEeCC
Q 042290 113 --QLQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 113 --~~~l~~~l--~~k~~LLVlDdv 132 (425)
.-.+.+++ .++.+||++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 11122333 478999999999
No 452
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.35 E-value=0.13 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-..++|+|+.|.|||||++.+..-
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998764
No 453
>PRK14527 adenylate kinase; Provisional
Probab=95.35 E-value=0.013 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...+|.|.|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998743
No 454
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.34 E-value=0.17 Score=47.85 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=34.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVI 96 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 96 (425)
..++|.|..|+|||+|++++++.. +-+.++++-+++..+ ..+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 478999999999999999999852 235678888876554 34444443
No 455
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.34 E-value=0.016 Score=54.83 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=34.8
Q ss_pred CCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 042290 17 EKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
-..++|.++.++.+.-.+... +..-+.+.|.+|+||||+|+.+..
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~------~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDP------GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhcc------CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 356899999988877544322 223589999999999999999866
No 456
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.33 E-value=0.062 Score=53.80 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=45.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEE-EEEeCCCCC-HHHHHHHHHHHhc-CCCCCCCHH-----HHHHHHH
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRA-WAYVSEDFD-AVGITKVILQADA-GSVDVNDLN-----LLQLQLE 117 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~-wv~~~~~~~-~~~~~~~il~~l~-~~~~~~~~~-----~~~~~l~ 117 (425)
.-.+|+|++|+|||+|++.+++.... .+-++.+ .+-+.+... +.++...+-.++- ...+..... .+.-.+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999984321 2233333 444555443 2223222211111 111111111 1111223
Q ss_pred HHc--CCceEEEEEeCC
Q 042290 118 NQL--KNKKFLLVLDDM 132 (425)
Q Consensus 118 ~~l--~~k~~LLVlDdv 132 (425)
+++ .++.+||++|++
T Consensus 496 e~fre~G~dVlillDSl 512 (672)
T PRK12678 496 KRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHcCCCEEEEEeCc
Confidence 333 578999999999
No 457
>PRK05922 type III secretion system ATPase; Validated
Probab=95.32 E-value=0.12 Score=50.45 Aligned_cols=84 Identities=12% Similarity=0.176 Sum_probs=46.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC--------CCCCCCHHHH---
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSED-FDAVGITKVILQADAG--------SVDVNDLNLL--- 112 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~--------~~~~~~~~~~--- 112 (425)
-..++|.|..|+|||||.+.+++... .+...+..+++. ....+.+.+....... ..+.......
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 34689999999999999999987422 233344333332 2334444444433221 1111111111
Q ss_pred --HHHHHHHc--CCceEEEEEeCC
Q 042290 113 --QLQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 113 --~~~l~~~l--~~k~~LLVlDdv 132 (425)
.-.+.+++ .++++||++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 11123333 488999999999
No 458
>PRK13949 shikimate kinase; Provisional
Probab=95.30 E-value=0.011 Score=50.25 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
-|+|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998843
No 459
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.28 E-value=0.012 Score=49.12 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 042290 48 IPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 48 v~I~G~~GvGKTtLa~~~~~~ 68 (425)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 460
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.28 E-value=0.044 Score=54.79 Aligned_cols=134 Identities=15% Similarity=0.111 Sum_probs=67.3
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 042290 19 EVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQ 98 (425)
Q Consensus 19 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 98 (425)
.++|....+..+.+.+..... ....+.|.|..|+||+++|+.+..... ..-...+.+++..- ....+...+..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~----~~~~vli~Ge~GtGK~~lA~~ih~~s~--~~~~~~~~i~c~~~-~~~~~~~~lfg 216 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIAL----SQASVLISGESGTGKELIARAIHYNSR--RAKGPFIKVNCAAL-PESLLESELFG 216 (457)
T ss_pred ceecccHHHhHHHHHHHHHcC----CCcEEEEEcCCCccHHHHHHHHHHhCC--CCCCCeEEEECCCC-CHHHHHHHhcC
Confidence 477777767666666544332 234678999999999999999876321 11112233343332 22211111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHcCCceEEEEEeCCCCCChHHHhccccccCCCC-----------CCcEEEEecCCh
Q 042290 99 ADAGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWSENYDVRANLCKPFKAGL-----------PGSKIIVTTRNE 163 (425)
Q Consensus 99 ~l~~~~~~~~~~~~~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTtR~~ 163 (425)
.-......... .....+ .....-.|+||++..........+...+.... ...+||.||...
T Consensus 217 ~~~~~~~~~~~-~~~g~~---~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 217 HEKGAFTGAQT-LRQGLF---ERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD 288 (457)
T ss_pred CCCCCCCCCCC-CCCCce---EECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC
Confidence 00000000000 000000 01123468999997766666666665554321 235899888653
No 461
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.29 Score=44.31 Aligned_cols=59 Identities=15% Similarity=0.069 Sum_probs=42.1
Q ss_pred ceEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCC-hhhhhccCCCCceeecCCC
Q 042290 123 KKFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRN-EGVSSMVTTPGAAHSLGNL 181 (425)
Q Consensus 123 k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~-~~v~~~~~~~~~~~~l~~L 181 (425)
+.-++|+|+++......++.++..+.....++.+|++|.+ ..+.....+....+.+.+.
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 4557899999888889999999999887777777766665 4555444444345566555
No 462
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.27 E-value=0.093 Score=51.49 Aligned_cols=87 Identities=20% Similarity=0.298 Sum_probs=52.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHHH--
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLLQ-- 113 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~~-- 113 (425)
-.-++|.|.+|+|||+|+..++..... .+-..++++-+++... ..+++..+...-. ...+........
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 346899999999999999998774321 2224667777766543 4556666654321 111121122211
Q ss_pred ---HHHHHHc---CCceEEEEEeCC
Q 042290 114 ---LQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 114 ---~~l~~~l---~~k~~LLVlDdv 132 (425)
-.+.+++ +++.+||++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecch
Confidence 1233444 468999999999
No 463
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.27 E-value=0.048 Score=55.83 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=27.1
Q ss_pred EEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChhhhh
Q 042290 126 LLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEGVSS 167 (425)
Q Consensus 126 LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~v~~ 167 (425)
+||+|.+.-.+......+...++ .++++|+.--..++..
T Consensus 262 vlIiDEaSMvd~~l~~~ll~al~---~~~rlIlvGD~~QLps 300 (586)
T TIGR01447 262 VLVVDEASMVDLPLMAKLLKALP---PNTKLILLGDKNQLPS 300 (586)
T ss_pred EEEEcccccCCHHHHHHHHHhcC---CCCEEEEECChhhCCC
Confidence 89999996666666666666654 4688888776554443
No 464
>PRK13409 putative ATPase RIL; Provisional
Probab=95.24 E-value=0.13 Score=52.88 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=62.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEE-----eCCC------CCHHHHH-------------HHHHHHh
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAY-----VSED------FDAVGIT-------------KVILQAD 100 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~-----~~~~------~~~~~~~-------------~~il~~l 100 (425)
-.+++|.|+.|+|||||++.++..... ..+.+++. +.+. .+..+.+ ..++..+
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p---~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l 441 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKP---DEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence 358999999999999999999874321 11222110 1111 1222221 1222222
Q ss_pred cC------CCCC-CCHHHHHHHHHHHcCCceEEEEEeCCCC-CChHHHhccccccCCC--CCCcEEEEecCChhhhhcc
Q 042290 101 AG------SVDV-NDLNLLQLQLENQLKNKKFLLVLDDMWS-ENYDVRANLCKPFKAG--LPGSKIIVTTRNEGVSSMV 169 (425)
Q Consensus 101 ~~------~~~~-~~~~~~~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~--~~~~~ilvTtR~~~v~~~~ 169 (425)
+- .... ...+...-.+...+..++-+|+||.-.. -+...-..+...+... ..+..||++|.+...+..+
T Consensus 442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 20 0111 1122223345566677788999998632 3333444444443322 1356788888886554433
No 465
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.24 E-value=0.098 Score=51.17 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=48.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc--------CCCCCCCHHHH---
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA--------GSVDVNDLNLL--- 112 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~--------~~~~~~~~~~~--- 112 (425)
.-..++|.|.+|+|||||+..++..... ...++...-.......+++...+..-+ ...+.......
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 3457899999999999999999885321 222333222233556566665555432 11111111111
Q ss_pred --HHHHHHHc--CCceEEEEEeCC
Q 042290 113 --QLQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 113 --~~~l~~~l--~~k~~LLVlDdv 132 (425)
...+.+++ +++++||++||+
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecch
Confidence 11122222 478999999999
No 466
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.23 E-value=0.026 Score=49.07 Aligned_cols=36 Identities=25% Similarity=0.124 Sum_probs=27.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEE
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAY 82 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~ 82 (425)
.-.+++|.|++|+|||||.+.+.. ....-.+.+|+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEEC
Confidence 345899999999999999998866 233345677775
No 467
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.22 E-value=0.065 Score=52.87 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=51.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCC--CeEEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHHH--
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYF--SFRAWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNLL-- 112 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~-- 112 (425)
.-++|.|.+|+|||+|+..+++.....+.+ ..++++-+++... ..+++..+...-. ...+.......
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 467899999999999999998854332111 1456666665543 4555555554322 11112122111
Q ss_pred ---HHHHHHHc---CCceEEEEEeCC
Q 042290 113 ---QLQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 113 ---~~~l~~~l---~~k~~LLVlDdv 132 (425)
...+.+++ +++++||++||+
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 11233444 478899999999
No 468
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.20 E-value=0.021 Score=53.83 Aligned_cols=49 Identities=33% Similarity=0.441 Sum_probs=34.0
Q ss_pred CCccccchhhHHH---HHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 042290 17 EKEVYGREKDKEA---IVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 17 ~~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
...+||..+..+. +.++..+.. -.-+.|.|.|++|+|||+||..+++..
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K----~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGK----IAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT------TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHHHHHHhccc----ccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 4679998876553 466665433 134789999999999999999999954
No 469
>PRK08006 replicative DNA helicase; Provisional
Probab=95.19 E-value=0.13 Score=51.44 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=37.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
+..++.|-|.+|+|||++|..++........ ..+++++ -..+..++...++....
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g-~~V~~fS--lEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQD-KPVLIFS--LEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcC-CeEEEEe--ccCCHHHHHHHHHHHhc
Confidence 4568889999999999999998875432222 2344443 34667777777776654
No 470
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.19 E-value=0.036 Score=53.19 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=46.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCC-eEEEEEeCCCCCHHHHHHHHHH---HhcCCCCCCCHHHHHHHHHHHcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFS-FRAWAYVSEDFDAVGITKVILQ---ADAGSVDVNDLNLLQLQLENQLK 121 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~---~l~~~~~~~~~~~~~~~l~~~l~ 121 (425)
+.|.|+|+.|+||||++..+++.......-. .++.+ .++... ....+.. .+.......+.......++..|+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~--EdpiE~--~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY--EAPIEF--VYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe--CCCceE--eccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 6999999999999999999887431110011 22222 222110 0111100 00000011112334556677888
Q ss_pred CceEEEEEeCCCCCChHHHh
Q 042290 122 NKKFLLVLDDMWSENYDVRA 141 (425)
Q Consensus 122 ~k~~LLVlDdv~~~~~~~~~ 141 (425)
..+-.+++..+. +.+...
T Consensus 211 ~~Pd~i~vGEiR--d~et~~ 228 (358)
T TIGR02524 211 RKPHAILVGEAR--DAETIS 228 (358)
T ss_pred cCCCEEeeeeeC--CHHHHH
Confidence 888899999883 334443
No 471
>PRK13975 thymidylate kinase; Provisional
Probab=95.18 E-value=0.015 Score=50.86 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
..|+|.|+.|+||||+++.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999854
No 472
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.18 E-value=0.036 Score=53.28 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=48.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHH-HHHHHHHHhcCCCCCCCHHHHHHHHHHHcCCce
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVG-ITKVILQADAGSVDVNDLNLLQLQLENQLKNKK 124 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~il~~l~~~~~~~~~~~~~~~l~~~l~~k~ 124 (425)
+.+.|+|+.|+||||++..+++.... ......+. .+-++....- -...+....... -..+.....+.++..|+..+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~-~~~~~~Iv-tiEdp~E~~~~~~~~~~~~~q~e-vg~~~~~~~~~l~~aLR~~P 226 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGE-TYPDRKIV-TYEDPIEYILGSPDDLLPPAQSQ-IGRDVDSFANGIRLALRRAP 226 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEE-EEecCchhccCCCceeecccccc-cCCCccCHHHHHHHhhccCC
Confidence 47899999999999999998774321 11122222 2222211100 000000000000 01122345567788888888
Q ss_pred EEEEEeCCCCCChHHHhc
Q 042290 125 FLLVLDDMWSENYDVRAN 142 (425)
Q Consensus 125 ~LLVlDdv~~~~~~~~~~ 142 (425)
=.|+++.+. +.+.+..
T Consensus 227 D~I~vGEiR--d~et~~~ 242 (372)
T TIGR02525 227 KIIGVGEIR--DLETFQA 242 (372)
T ss_pred CEEeeCCCC--CHHHHHH
Confidence 899999994 3445544
No 473
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.17 E-value=0.13 Score=50.79 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=47.4
Q ss_pred cEEEEEEecCCchHHHHHHH-HhcCcccccCCCeE-EEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCCCHHH--
Q 042290 45 FSVIPITGMGGLGKTTLAQL-VFNDVRVKKYFSFR-AWAYVSEDFD-AVGITKVILQADA--------GSVDVNDLNL-- 111 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~-~~~~~~~~~~f~~~-~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~-- 111 (425)
-.-++|.|.+|+|||+||.. +.+. ..-+.. +++.+++... ..++...+...-. ...+......
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q----~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQ----KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhc----ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 34678999999999999654 5553 123433 7777776554 4455555544321 1111111111
Q ss_pred -------HHHHHHHHcCCceEEEEEeCC
Q 042290 112 -------LQLQLENQLKNKKFLLVLDDM 132 (425)
Q Consensus 112 -------~~~~l~~~l~~k~~LLVlDdv 132 (425)
..+.++. .++++|||+||+
T Consensus 217 ap~~a~aiAEyfr~--~G~~VLlv~Ddl 242 (485)
T CHL00059 217 APYTGAALAEYFMY--RGRHTLIIYDDL 242 (485)
T ss_pred HHHHHhhHHHHHHH--cCCCEEEEEcCh
Confidence 2223332 578999999999
No 474
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.16 E-value=0.019 Score=51.85 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=21.8
Q ss_pred EEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC
Q 042290 50 ITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE 85 (425)
Q Consensus 50 I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 85 (425)
|.|++|+||||+++.+.+..... -..++-|++.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~--~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN--GRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc--cCCceEEEcch
Confidence 68999999999999998854332 23355555543
No 475
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.15 E-value=0.029 Score=54.61 Aligned_cols=52 Identities=29% Similarity=0.266 Sum_probs=36.3
Q ss_pred CCccccchhhHHHHHHHhhC----C----CCCCC----CCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 17 EKEVYGREKDKEAIVGLLLG----D----DLNSG----RGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 17 ~~~~vGR~~e~~~l~~~L~~----~----~~~~~----~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
+..++|.++.++.+...+.. . ..... ...+.+.++|++|+|||+||+.++..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~ 139 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARI 139 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHh
Confidence 35579999999888765521 0 00000 11357999999999999999999873
No 476
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.14 E-value=0.026 Score=53.60 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=35.1
Q ss_pred CccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 042290 18 KEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 18 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
..+||.++.+..|.-.+..+ ...-+.|.|.+|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999888876666543 234578999999999999999975
No 477
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.13 E-value=0.022 Score=39.24 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=18.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 042290 47 VIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+..|+|+.|+|||||..++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999987643
No 478
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.13 E-value=0.2 Score=50.27 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-.+++|.|+.|.|||||++.++.-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 479
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.13 E-value=0.02 Score=54.54 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=32.9
Q ss_pred cccchhhHHHHHHHhhCCCCC-----------CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 042290 20 VYGREKDKEAIVGLLLGDDLN-----------SGRGFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 20 ~vGR~~e~~~l~~~L~~~~~~-----------~~~~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..|-..+...|...+.....- ..+...++.|+|.+|.||||+.+.+...
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 455566667776665332110 0234468899999999999999998764
No 480
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.13 E-value=0.039 Score=52.95 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHcC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGS-VDVNDLNLLQLQLENQLK 121 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~l~~~l~ 121 (425)
..++=+-|+|..|.|||.|+..+|+...++..- ..........+-+.+... ....... .+.+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~----------R~HFh~Fm~~vh~~l~~~~~~~~~l~----~va~~l~ 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR----------RVHFHEFMLDVHSRLHQLRGQDDPLP----QVADELA 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccc----------cccccHHHHHHHHHHHHHhCCCccHH----HHHHHHH
Confidence 356778999999999999999999965442110 011112223333333311 1222222 3344455
Q ss_pred CceEEEEEeCCCCCC
Q 042290 122 NKKFLLVLDDMWSEN 136 (425)
Q Consensus 122 ~k~~LLVlDdv~~~~ 136 (425)
++..||+||.+.=.+
T Consensus 126 ~~~~lLcfDEF~V~D 140 (362)
T PF03969_consen 126 KESRLLCFDEFQVTD 140 (362)
T ss_pred hcCCEEEEeeeeccc
Confidence 666799999985443
No 481
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.12 E-value=0.036 Score=50.79 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCC
Q 042290 43 RGFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSE 85 (425)
Q Consensus 43 ~~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 85 (425)
....++.|.|++|+|||++|.+++.... ..-..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 3567899999999999999999866422 2234678888754
No 482
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=0.77 Score=43.96 Aligned_cols=57 Identities=14% Similarity=-0.015 Sum_probs=35.6
Q ss_pred ceeecCCCChhhHHHHHHHhhcCCCCcCCCcchHHHHHHHHHhhCCChhHHHHhhhhh
Q 042290 174 AAHSLGNLLRDGCLRIFVQHSLRRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGGLL 231 (425)
Q Consensus 174 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~PLai~~~~~~L 231 (425)
.++++++.+.+|+.++..-..-..-- .....-++--+++.-..+|+|-.++.++..+
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl-~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWL-LKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHH-HhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 56889999999998776654321110 0011113455678888899997777766654
No 483
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.08 E-value=0.042 Score=56.76 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
-..++|+|+.|.|||||++.+..-
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999999764
No 484
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.028 Score=49.89 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=25.9
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcCccc
Q 042290 42 GRGFSVIPITGMGGLGKTTLAQLVFNDVRV 71 (425)
Q Consensus 42 ~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 71 (425)
...+.+|.|-|.+|+||||+|.++++...+
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI 115 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGI 115 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCC
Confidence 356889999999999999999999996544
No 485
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.06 E-value=0.016 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
..|+|+|+.|+|||||++.++..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999999884
No 486
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.04 E-value=0.13 Score=53.06 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
.-..++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccC
Confidence 3468999999999999999998664
No 487
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.04 E-value=0.027 Score=60.49 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=71.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccc--cCCCeEEEEEeCCCCC----HH--HHHHHHHHHhcCCCCCCCHHHHHHHH
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVK--KYFSFRAWAYVSEDFD----AV--GITKVILQADAGSVDVNDLNLLQLQL 116 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~----~~--~~~~~il~~l~~~~~~~~~~~~~~~l 116 (425)
..-+.|+|.+|.||||+.+.++-....+ ..=+..+++.+..... .. .+..-+...+...... .+.....
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~---~~~~~~~ 298 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIA---KQLIEAH 298 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCc---chhhHHH
Confidence 3468999999999999999876543211 1123344444331111 11 1222222222211111 1122222
Q ss_pred HHHcCCceEEEEEeCCCCCChH----HHhccccccCCCCCCcEEEEecCChhhhhccCCCCceeecCCCChhhHH
Q 042290 117 ENQLKNKKFLLVLDDMWSENYD----VRANLCKPFKAGLPGSKIIVTTRNEGVSSMVTTPGAAHSLGNLLRDGCL 187 (425)
Q Consensus 117 ~~~l~~k~~LLVlDdv~~~~~~----~~~~l~~~l~~~~~~~~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~ea~ 187 (425)
...+...++++++|.++..... ....+.. +...-+.+.+|+|+|....-...... ...++..+.++...
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~-f~~~~~~~~~iltcR~~~~~~~~~~f-~~~ei~~~~~~~i~ 371 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINK-FLQEYPDAQVLLTCRPDTYKEEFKGF-AVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHH-HhhhccCCeEEEEeccchhhhhhhhh-hhccchhhhHHHHH
Confidence 5677788999999998543221 1112111 22223577999999986544443333 45566666655444
No 488
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.03 E-value=0.14 Score=50.38 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=46.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhc--------CCCCCCCHHHH---
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDF-DAVGITKVILQADA--------GSVDVNDLNLL--- 112 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~--------~~~~~~~~~~~--- 112 (425)
-..++|.|..|+|||||++.+.... ..+.++...+.... +...+...+...-. ...+.......
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999988732 12333333344333 34444444443322 11112112111
Q ss_pred --HHHHHHHc--CCceEEEEEeCC
Q 042290 113 --QLQLENQL--KNKKFLLVLDDM 132 (425)
Q Consensus 113 --~~~l~~~l--~~k~~LLVlDdv 132 (425)
...+.+++ +++++||++||+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecch
Confidence 11122332 588999999999
No 489
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.02 E-value=0.16 Score=53.86 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=54.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH--cCCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADAGSVDVNDLNLLQLQLENQ--LKNK 123 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~l~~~--l~~k 123 (425)
+++.|.|.+|+||||+++.+..-.... ...+........ ....+-...+ ........+...+... ...+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg~----Aa~~L~~~~g--~~a~Ti~~~~~~~~~~~~~~~~ 439 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSGK----AAEGLQAESG--IESRTLASLEYAWANGRDLLSD 439 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcHH----HHHHHHhccC--CceeeHHHHHhhhccCcccCCC
Confidence 488999999999999999987633221 122333222111 1111111111 1111222221111100 0124
Q ss_pred eEEEEEeCCCCCChHHHhccccccCCCCCCcEEEEecCChh
Q 042290 124 KFLLVLDDMWSENYDVRANLCKPFKAGLPGSKIIVTTRNEG 164 (425)
Q Consensus 124 ~~LLVlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTtR~~~ 164 (425)
.-|||+|++.-.+......+..... ..|+++|+.--..+
T Consensus 440 ~~llIvDEasMv~~~~~~~Ll~~~~--~~~~kliLVGD~~Q 478 (744)
T TIGR02768 440 KDVLVIDEAGMVGSRQMARVLKEAE--EAGAKVVLVGDPEQ 478 (744)
T ss_pred CcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEECChHH
Confidence 5799999996555555555554322 25788887765443
No 490
>PRK13948 shikimate kinase; Provisional
Probab=95.02 E-value=0.017 Score=49.73 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFND 68 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~ 68 (425)
....|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999884
No 491
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.01 E-value=0.024 Score=53.92 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=37.0
Q ss_pred CCCccccchhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 042290 16 NEKEVYGREKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 16 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
+-..+||-++.+..|...+.++ ..+-|.|.|..|+||||+|+.+++
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999888888877554 344577999999999999999865
No 492
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.01 E-value=0.026 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.119 Sum_probs=20.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 042290 45 FSVIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 45 ~~vv~I~G~~GvGKTtLa~~~~~ 67 (425)
.+++.|.|+.|.||||+.+.+..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999988754
No 493
>PRK08840 replicative DNA helicase; Provisional
Probab=95.00 E-value=0.16 Score=50.50 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=37.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 042290 44 GFSVIPITGMGGLGKTTLAQLVFNDVRVKKYFSFRAWAYVSEDFDAVGITKVILQADA 101 (425)
Q Consensus 44 ~~~vv~I~G~~GvGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 101 (425)
+...+.|-|.+|+|||++|..++.....+.. ..+.++++ ..+..++...++....
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~-~~v~~fSl--EMs~~ql~~Rlla~~s 270 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQD-KPVLIFSL--EMPAEQLMMRMLASLS 270 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCC-CeEEEEec--cCCHHHHHHHHHHhhC
Confidence 4568889999999999999888775432222 23455543 3567777777776654
No 494
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.98 E-value=0.23 Score=47.92 Aligned_cols=44 Identities=32% Similarity=0.367 Sum_probs=32.4
Q ss_pred HHHHHHHhhCC-CCC--CCCCcEEEEEEecCCchHHHHHHHHhcCcc
Q 042290 27 KEAIVGLLLGD-DLN--SGRGFSVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 27 ~~~l~~~L~~~-~~~--~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
.++|.++|... ... ..+.+.+|..+|.-|.||||.+..+++..+
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lk 125 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLK 125 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHH
Confidence 46777777642 111 135678999999999999999999888544
No 495
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.98 E-value=0.02 Score=46.67 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
.+++|+|+.|+|||||.+.++...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 589999999999999999998743
No 496
>PRK10646 ADP-binding protein; Provisional
Probab=94.98 E-value=0.033 Score=46.20 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=31.5
Q ss_pred hhhHHHHHHHhhCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcCccc
Q 042290 24 EKDKEAIVGLLLGDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV 71 (425)
Q Consensus 24 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GvGKTtLa~~~~~~~~~ 71 (425)
+++..++-+.|...-. ...+|.+.|.=|+||||+++.+++..-+
T Consensus 11 ~~~t~~l~~~la~~l~----~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 11 EQATLDLGARVAKACD----GATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHHHHhCC----CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456666666643321 2358999999999999999999886543
No 497
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.98 E-value=0.11 Score=50.85 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=52.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccc------c-----cCCCeEEEEEeCCCCCHHHHHHHHHHHhc-C--------CCC
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVRV------K-----KYFSFRAWAYVSEDFDAVGITKVILQADA-G--------SVD 105 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~~------~-----~~f~~~~wv~~~~~~~~~~~~~~il~~l~-~--------~~~ 105 (425)
.-++|.|.+|+|||+|+..+++.... . +.-..+++..+++.....+.+...+...+ . ..+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 46789999999999999998875431 0 01115566677777666665565555443 1 112
Q ss_pred CCCHHHHH-----HHHHHHc---CCceEEEEEeCC
Q 042290 106 VNDLNLLQ-----LQLENQL---KNKKFLLVLDDM 132 (425)
Q Consensus 106 ~~~~~~~~-----~~l~~~l---~~k~~LLVlDdv 132 (425)
........ -.+.+++ +++++||++||+
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 22222111 1133333 468999999999
No 498
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.97 E-value=0.048 Score=47.49 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.0
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 042290 47 VIPITGMGGLGKTTLAQLVFNDV 69 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~~~ 69 (425)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998854
No 499
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.97 E-value=0.052 Score=47.32 Aligned_cols=25 Identities=40% Similarity=0.512 Sum_probs=22.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcc
Q 042290 46 SVIPITGMGGLGKTTLAQLVFNDVR 70 (425)
Q Consensus 46 ~vv~I~G~~GvGKTtLa~~~~~~~~ 70 (425)
..|+|.|..|+||||+++.+.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988543
No 500
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.96 E-value=0.0065 Score=52.65 Aligned_cols=21 Identities=38% Similarity=0.237 Sum_probs=18.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 042290 47 VIPITGMGGLGKTTLAQLVFN 67 (425)
Q Consensus 47 vv~I~G~~GvGKTtLa~~~~~ 67 (425)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998873
Done!